Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 94 of 163
Found at i:26827038 original size:12 final size:13
Alignment explanation
Indices: 26827019--26827052 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
26827009 AGAAGGGATG
26827019 GAGAAAAGAAAAA
1 GAGAAAAGAAAAA
26827032 G-GAAAAG-AAAA
1 GAGAAAAGAAAAA
26827043 GAGAAAAGAA
1 GAGAAAAGAA
26827053 GAGAGGGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 5 0.26
12 12 0.63
13 2 0.11
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
GAGAAAAGAAAAA
Found at i:26827491 original size:94 final size:94
Alignment explanation
Indices: 26827365--26827566 Score: 230
Period size: 94 Copynumber: 2.2 Consensus size: 94
26827355 GTGACAAGAG
* ** * **
26827365 CACTCTCAT-GCTCACACTTA-CCCATTAAATAAGTGGCAATTTCTTCATTGTTT-TCATTAAAA
1 CACTCTCATAGCTCACATTTATCTTA-TAAATAAGTGACAATTTCTTCATCATTTCT-ATTAAAA
* * * *
26827427 AGTTAATTTTATTCTCGCATTGACTAGAAAA
64 AGTTAATTTCAATCCCACATTGACTAGAAAA
* *
26827458 CACTCTCATATCTCACATTTATCTTATAAATAAGTGACAATTTCTTCATCATTTCTATTAAAATG
1 CACTCTCATAGCTCACATTTATCTTATAAATAAGTGACAATTTCTTCATCATTTCTATTAAAAAG
*
26827523 TTAATTTCAATCCCACATTGACTATAAAA
66 TTAATTTCAATCCCACATTGACTAGAAAA
* *
26827552 TACTCTTATAGCTCA
1 CACTCTCATAGCTCA
26827567 ATTCTTTACT
Statistics
Matches: 90, Mismatches: 16, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
93 9 0.10
94 78 0.87
95 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.39
Consensus pattern (94 bp):
CACTCTCATAGCTCACATTTATCTTATAAATAAGTGACAATTTCTTCATCATTTCTATTAAAAAG
TTAATTTCAATCCCACATTGACTAGAAAA
Found at i:26827597 original size:71 final size:69
Alignment explanation
Indices: 26827509--26827674 Score: 199
Period size: 71 Copynumber: 2.4 Consensus size: 69
26827499 TTCTTCATCA
* * * * *
26827509 TTTCTATTAAAATGTTAATTTCAATCCCACATTGACTATAAAATACTCTTATAGCTCAATTCTTT
1 TTTC-ATTAAAAAGTTAATTTTAATCCCACATGGACTACAAAATACTCTTATAGCTCAATTCTTC
*
26827574 ACTAT
65 ACGAT
* * * * *
26827579 TTTCATTATAAAAAGTTAATTTTAAGCTCACATGGACTACAAAATACTCTTATTGTTCACTTCTT
1 TTTCA-T-TAAAAAGTTAATTTTAATCCCACATGGACTACAAAATACTCTTATAGCTCAATTCTT
26827644 CACGAT
64 CACGAT
26827650 TTTCATTAAAAA-TTAATTTTAATCC
1 TTTCATTAAAAAGTTAATTTTAATCC
26827675 TACGTTGGCT
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
68 11 0.14
69 7 0.09
70 6 0.07
71 57 0.70
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.42
Consensus pattern (69 bp):
TTTCATTAAAAAGTTAATTTTAATCCCACATGGACTACAAAATACTCTTATAGCTCAATTCTTCA
CGAT
Found at i:26827794 original size:6 final size:6
Alignment explanation
Indices: 26827783--26827814 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
26827773 ATTTTTACTA
*
26827783 AAAATT AAAATT AAAATT AAAATT AAATTT AA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AA
26827815 CTAAATCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AAAATT
Found at i:26827875 original size:68 final size:67
Alignment explanation
Indices: 26827801--26827958 Score: 178
Period size: 68 Copynumber: 2.3 Consensus size: 67
26827791 AATTAAAATT
*
26827801 AAAATTA-AATTTAACTAAAT-CTTAGTATATGCACTTAAA-TAGTAGTATGTGTAAATACTTTA
1 AAAATTAGAA-TTAACTAAATACTTA-TATATGCAC-TAAACTA-TAGTATGTGAAAATACTTTA
26827863 TATATA
62 TATATA
* * *
26827869 AAAATTATGAATTAATTAAATATTTATATATGCACTAAACTATAGTATGTGAAAATATTTTATAT
1 AAAATTA-GAATTAACTAAATACTTATATATGCACTAAACTATAGTATGTGAAAATACTTTATAT
26827934 ATA
65 ATA
* * *
26827937 AAAAATATGAATTGATTAAATA
1 AAAATTA-GAATTAACTAAATA
26827959 TGTTTTTTTG
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
68 55 0.69
69 20 0.25
70 5 0.06
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (67 bp):
AAAATTAGAATTAACTAAATACTTATATATGCACTAAACTATAGTATGTGAAAATACTTTATATA
TA
Found at i:26827959 original size:68 final size:69
Alignment explanation
Indices: 26827826--26827959 Score: 209
Period size: 68 Copynumber: 2.0 Consensus size: 69
26827816 TAAATCTTAG
* *
26827826 TATATGCACTTAAATAGTAGTATGTGTAAATACTTTATATATAAAAATTATGAATTAATTAAATA
1 TATATGCACTTAAATAGTAGTATGTGAAAATACTTTATATATAAAAAATATGAATTAATTAAATA
26827891 TTTA
66 TTTA
* *
26827895 TATATGCAC-TAAACTA-TAGTATGTGAAAATATTTTATATATAAAAAATATGAATTGATTAAAT
1 TATATGCACTTAAA-TAGTAGTATGTGAAAATACTTTATATATAAAAAATATGAATTAATTAAAT
26827958 AT
65 AT
26827960 GTTTTTTTGA
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
68 49 0.82
69 11 0.18
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.40
Consensus pattern (69 bp):
TATATGCACTTAAATAGTAGTATGTGAAAATACTTTATATATAAAAAATATGAATTAATTAAATA
TTTA
Found at i:26833175 original size:47 final size:47
Alignment explanation
Indices: 26833085--26833177 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 47
26833075 GATATTGAGT
* *
26833085 TTCTTCTTGGTCTTCCATAAGCATTTAAGTTGTGCCCATAGACTATA
1 TTCTTCTTGGTCTTCCATAAGCACTTAAGTTGTGCCCACAGACTATA
* **
26833132 TTCTTCTTTGTCTTCCATAAGCACTTAAGTTGTGCCTGCAGACTAT
1 TTCTTCTTGGTCTTCCATAAGCACTTAAGTTGTGCCCACAGACTAT
26833178 CCGGATTGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (47 bp):
TTCTTCTTGGTCTTCCATAAGCACTTAAGTTGTGCCCACAGACTATA
Found at i:26836800 original size:32 final size:32
Alignment explanation
Indices: 26836764--26836870 Score: 90
Period size: 32 Copynumber: 3.2 Consensus size: 32
26836754 TAACTAGGCT
*
26836764 ATGGCATTCTGACGTAAGACCAAGGTTGGACC
1 ATGGCATTATGACGTAAGACCAAGGTTGGACC
* * *
26836796 ATGGCAATGTATATAGATGTAAGACCATA-GTTGGGCT
1 ATGGC-A--T-TAT-GACGTAAGACCA-AGGTTGGACC
* * *
26836833 ATGGCATTTTTACGTAAGACCATGGTTGGACC
1 ATGGCATTATGACGTAAGACCAAGGTTGGACC
26836865 ATGGCA
1 ATGGCA
26836871 GTGTATATAG
Statistics
Matches: 58, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
32 27 0.47
33 3 0.05
34 1 0.02
35 1 0.02
36 3 0.05
37 22 0.38
38 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (32 bp):
ATGGCATTATGACGTAAGACCAAGGTTGGACC
Found at i:26836829 original size:37 final size:37
Alignment explanation
Indices: 26836777--26836898 Score: 130
Period size: 37 Copynumber: 3.4 Consensus size: 37
26836767 GCATTCTGAC
26836777 GTAAGACCA-AGGTTGGACCATGGCAATGTATATAGAT
1 GTAAGACCATA-GTTGGACCATGGCAATGTATATAGAT
* * * *
26836814 GTAAGACCATAGTTGGGCTATGGC-AT-T-T-T-TAC
1 GTAAGACCATAGTTGGACCATGGCAATGTATATAGAT
* *
26836846 GTAAGACCATGGTTGGACCATGGCAGTGTATATAGAT
1 GTAAGACCATAGTTGGACCATGGCAATGTATATAGAT
*
26836883 GTAAGAACATAGTTGG
1 GTAAGACCATAGTTGG
26836899 GTGATGGCAT
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
32 22 0.33
33 2 0.03
34 2 0.03
35 2 0.03
36 3 0.04
37 35 0.52
38 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (37 bp):
GTAAGACCATAGTTGGACCATGGCAATGTATATAGAT
Found at i:26836838 original size:69 final size:69
Alignment explanation
Indices: 26836760--26836933 Score: 253
Period size: 69 Copynumber: 2.5 Consensus size: 69
26836750 ATCATAACTA
*
26836760 GGCTATGGCATTCTGACGTAAGACCAAGGTTGGACCATGGCAATGTATATAGATGTAAGACCATA
1 GGCTATGGCATTCTGACGTAAGACCAAGGTTGGACCATGGCAATGTATATAGATGTAAGAACATA
26836825 GTTG
66 GTTG
* * * *
26836829 GGCTATGGCATTTTTACGTAAGACCATGGTTGGACCATGGCAGTGTATATAGATGTAAGAACATA
1 GGCTATGGCATTCTGACGTAAGACCAAGGTTGGACCATGGCAATGTATATAGATGTAAGAACATA
26836894 GTTG
66 GTTG
*
26836898 GG-TGATGGCATTCTGATGATAAGACCATA-GTTGGAC
1 GGCT-ATGGCATTCTGACG-TAAGACCA-AGGTTGGAC
26836934 TACGGCATTC
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
68 1 0.01
69 77 0.83
70 15 0.16
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.28
Consensus pattern (69 bp):
GGCTATGGCATTCTGACGTAAGACCAAGGTTGGACCATGGCAATGTATATAGATGTAAGAACATA
GTTG
Found at i:26836906 original size:37 final size:35
Alignment explanation
Indices: 26836796--26836931 Score: 99
Period size: 32 Copynumber: 3.9 Consensus size: 35
26836786 AGGTTGGACC
26836796 ATGGCAATGTATATAGATGTAAGACCATAGTTGGGCT
1 ATGGC-ATGTATATAGATGTAAGACCATAGTTGGG-T
* * * **
26836833 ATGGCAT-T-T-T-TACGTAAGACCATGGTTGGACC
1 ATGGCATGTATATAGATGTAAGACCATAGTTGG-GT
*
26836865 ATGGCAGTGTATATAGATGTAAGAACATAGTTGGGT
1 ATGGCA-TGTATATAGATGTAAGACCATAGTTGGGT
*
26836901 GATGGCA--T-TCT-GATGATAAGACCATAGTTGG
1 -ATGGCATGTATATAGATG-TAAGACCATAGTTGG
26836932 ACTACGGCAT
Statistics
Matches: 78, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
32 26 0.33
33 18 0.23
34 3 0.04
35 2 0.03
36 3 0.04
37 26 0.33
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (35 bp):
ATGGCATGTATATAGATGTAAGACCATAGTTGGGT
Found at i:26836927 original size:33 final size:31
Alignment explanation
Indices: 26836709--26836991 Score: 145
Period size: 33 Copynumber: 8.4 Consensus size: 31
26836699 AGTGTATATA
* *
26836709 GATGTAAGACCATAGCTGGGCTATGACATTCT
1 GATGTAAGACCATAGTTGGG-TATGGCATTCT
* * * *
26836741 GATGATAAGATCATAACTAGGCTATGGCATTCT
1 GATG-TAAGACCAT-AGTTGGGTATGGCATTCT
* ** *
26836774 GACGTAAGACCA-AGGTTGGACCATGGCAATGTATAT
1 GATGTAAGACCATA-GTTGG-GTATGGC-A--T-TCT
*
26836810 AGATGTAAGACCATAGTTGGGCTATGGCATTTT
1 -GATGTAAGACCATAGTTGGG-TATGGCATTCT
* * * ** *
26836843 TACGTAAGACCATGGTTGGACCATGGCAGTGTATAT
1 GATGTAAGACCATAGTTGG-GTATGGCA---T-TCT
*
26836879 AGATGTAAGAACATAGTTGGGTGATGGCATTCT
1 -GATGTAAGACCATAGTTGGGT-ATGGCATTCT
* *
26836912 GATGATAAGACCATAGTTGGACTACGGCATTCT
1 GATG-TAAGACCATAGTTGG-GTATGGCATTCT
* * *
26836945 GATGTTAAGACCATAATCGGGTTATGGCATTAT
1 GATG-TAAGACCATAGTTGGG-TATGGCATTCT
26836978 GAATGTAAGACCAT
1 G-ATGTAAGACCAT
26836992 GGCTAGGCCA
Statistics
Matches: 191, Mismatches: 38, Indels: 43
0.70 0.14 0.16
Matches are distributed among these distances:
30 1 0.01
31 3 0.02
32 43 0.23
33 85 0.45
34 9 0.05
35 2 0.01
36 5 0.03
37 42 0.22
38 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (31 bp):
GATGTAAGACCATAGTTGGGTATGGCATTCT
Found at i:26842611 original size:28 final size:28
Alignment explanation
Indices: 26842550--26842633 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
26842540 ATGAATGAAC
* * * *
26842550 AATCTATATCTTGCTCGAAAAGAGCAATG
1 AATCTGTATCTAGCTCG-AATGAGCAATA
26842579 AATCTGTATCT-GTCTCGAATGAGCAATA
1 AATCTGTATCTAG-CTCGAATGAGCAATA
26842607 AATCTGTATCTAGCTCGAATGAGCAAT
1 AATCTGTATCTAGCTCGAATGAGCAAT
26842634 TAGTCTATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
28 35 0.70
29 15 0.30
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (28 bp):
AATCTGTATCTAGCTCGAATGAGCAATA
Found at i:26842652 original size:28 final size:28
Alignment explanation
Indices: 26842550--26842662 Score: 102
Period size: 28 Copynumber: 4.0 Consensus size: 28
26842540 ATGAATGAAC
* * *
26842550 AATCTATATCTTGCTCGAAAAGAGCAATG
1 AATCTATATCTAGCTCG-AATGAGCAATA
*
26842579 AATCTGTATCT-GTCTCGAATGAGCAATA
1 AATCTATATCTAG-CTCGAATGAGCAATA
* *
26842607 AATCTGTATCTAGCTCGAATGAGCAATT
1 AATCTATATCTAGCTCGAATGAGCAATA
* * * * *
26842635 AGTCTATTTCTGGTTCGAATGAGTAATA
1 AATCTATATCTAGCTCGAATGAGCAATA
26842663 TTCTGTACTT
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
28 56 0.79
29 15 0.21
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (28 bp):
AATCTATATCTAGCTCGAATGAGCAATA
Found at i:26842736 original size:27 final size:28
Alignment explanation
Indices: 26842651--26842737 Score: 72
Period size: 27 Copynumber: 3.2 Consensus size: 28
26842641 TTTCTGGTTC
* * *
26842651 GAATG-AGTAATATTCTGTACTTGGCTT
1 GAATGAAGAAATATTTTGTATTTGGCTT
** * * *
26842678 GAAT-AAGCCATATTTTGCATCTGGCTC
1 GAATGAAGAAATATTTTGTATTTGGCTT
*
26842705 AAATGAA-AAATATTTTGTATTTGGCTT
1 GAATGAAGAAATATTTTGTATTTGGCTT
26842732 GAATGA
1 GAATGA
26842738 GCTGCTTTCT
Statistics
Matches: 44, Mismatches: 14, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
27 42 0.95
28 2 0.05
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (28 bp):
GAATGAAGAAATATTTTGTATTTGGCTT
Found at i:26842751 original size:54 final size:54
Alignment explanation
Indices: 26842659--26842761 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
26842649 TCGAATGAGT
* *
26842659 AATATTCTGTACTTGGCTTGAATAAGCCATATTTTGCATCTGGCTCAAATGAAA
1 AATATTCTGTACTTGGCTTGAATAAGCCATATTCTGCATCTGACTCAAATGAAA
* * *
26842713 AATATTTTGTATTTGGCTTGAATGAGCTGC-T-TTCTGCATCTGACTCAAA
1 AATATTCTGTACTTGGCTTGAATAAGC--CATATTCTGCATCTGACTCAAA
26842762 CAAACATATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
54 40 0.95
55 1 0.02
56 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (54 bp):
AATATTCTGTACTTGGCTTGAATAAGCCATATTCTGCATCTGACTCAAATGAAA
Found at i:26844264 original size:34 final size:34
Alignment explanation
Indices: 26844226--26844292 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
26844216 CAATACGGTA
* **
26844226 GCAATTATCATGCTTATAATAGTTTGATTCAGTG
1 GCAATTATCATGCTTATAACAAATTGATTCAGTG
*
26844260 GCAATTATTATGCTTATAACAAATTGATTCAGT
1 GCAATTATCATGCTTATAACAAATTGATTCAGT
26844293 AACAAAAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (34 bp):
GCAATTATCATGCTTATAACAAATTGATTCAGTG
Found at i:26845411 original size:13 final size:13
Alignment explanation
Indices: 26845393--26845424 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26845383 CAGTGTCAAG
26845393 TTAACTTATGACA
1 TTAACTTATGACA
*
26845406 TTAACTTGTGACA
1 TTAACTTATGACA
26845419 TTAACT
1 TTAACT
26845425 CAATCAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (13 bp):
TTAACTTATGACA
Found at i:26845450 original size:4 final size:4
Alignment explanation
Indices: 26845443--26845477 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
26845433 CACATTATTA
*
26845443 ATAC ATAC ATAC ATAC ATAC TTAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
26845478 TATATAATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.29
Consensus pattern (4 bp):
ATAC
Found at i:26850552 original size:22 final size:22
Alignment explanation
Indices: 26850526--26850575 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
26850516 TTTACAACAC
*
26850526 TTTTAATAATTAAG-TTTATTT
1 TTTTAATAATTAAGAGTTATTT
26850547 TCTTT-ATAATTAAGAGTTATTT
1 T-TTTAATAATTAAGAGTTATTT
26850569 TTTTAAT
1 TTTTAAT
26850576 TTCATGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (22 bp):
TTTTAATAATTAAGAGTTATTT
Found at i:26852102 original size:43 final size:43
Alignment explanation
Indices: 26852004--26852226 Score: 355
Period size: 43 Copynumber: 5.3 Consensus size: 43
26851994 TTATGCGAAA
*
26852004 AAGCGCCGCTAAAGGCAATGTTCTTTAGCGGCGC-TTC-CCAC
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAC
* *
26852045 AAGCACCGCTAAAGGCCATGTTCTTTAACGGCGCTTTCTCCAC
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAC
*
26852088 AAGCGCCGCTAAAGG-CAT-TTTTTTAGCGGCGCTTTCTCCAC
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAC
* *
26852129 AAGTGCCGCTAAAGCCCATGTTCTTTAGCGGCGCTTTCTCCAC
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAC
*
26852172 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAA
1 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAC
26852215 AAGCGCCGCTAA
1 AAGCGCCGCTAA
26852227 TATAACAGAT
Statistics
Matches: 166, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
41 65 0.39
42 9 0.05
43 92 0.55
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAC
Found at i:26852148 original size:84 final size:85
Alignment explanation
Indices: 26852004--26852226 Score: 353
Period size: 84 Copynumber: 2.6 Consensus size: 85
26851994 TTATGCGAAA
* *
26852004 AAGCGCCGCTAAAGGCAATGTTCTTTAGCGGCGC-TTC-CCACAAGCACCGCTAAAGGCCATGTT
1 AAGCGCCGCTAAAGGC-ATGTTCTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAAGCCCATGTT
26852067 CTTTAACGGCGCTTTCTCCAC
65 CTTTAACGGCGCTTTCTCCAC
* *
26852088 AAGCGCCGCTAAAGGCAT-TTTTTTAGCGGCGCTTTCTCCACAAGTGCCGCTAAAGCCCATGTTC
1 AAGCGCCGCTAAAGGCATGTTCTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAAGCCCATGTTC
*
26852152 TTTAGCGGCGCTTTCTCCAC
66 TTTAACGGCGCTTTCTCCAC
*
26852172 AAGCGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTCTCCAAAAGCGCCGCTAA
1 AAGCGCCGCTAAAGG-CATGTTCTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAA
26852227 TATAACAGAT
Statistics
Matches: 127, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
82 13 0.10
83 5 0.04
84 74 0.58
85 3 0.02
86 32 0.25
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (85 bp):
AAGCGCCGCTAAAGGCATGTTCTTTAGCGGCGCTTTCTCCACAAGCGCCGCTAAAGCCCATGTTC
TTTAACGGCGCTTTCTCCAC
Found at i:26854476 original size:15 final size:17
Alignment explanation
Indices: 26854444--26854476 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26854434 ATTATTTATT
26854444 TTTTCTTTTAAATCTAA
1 TTTTCTTTTAAATCTAA
26854461 TTTT-TTTTAAAT-TAA
1 TTTTCTTTTAAATCTAA
26854476 T
1 T
26854477 CAAACTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTCTTTTAAATCTAA
Found at i:26855650 original size:42 final size:42
Alignment explanation
Indices: 26855597--26855776 Score: 213
Period size: 41 Copynumber: 4.3 Consensus size: 42
26855587 ACTTCACACA
* * **
26855597 TTTAGTGGCGCTTTTCTAATAAGCGCCGCTAAAGACCTGACC
1 TTTAGCGGCGCTTTTCTAATAAGCGCCGCTAATGACAAGACC
* *
26855639 TTTAGCGGCGCTTATTATAA-AAGCGCCGTTAATGACAAGACC
1 TTTAGCGGCGCTT-TTCTAATAAGCGCCGCTAATGACAAGACC
* * *
26855681 TTTAGTGGTGCTTTT-TTATAAGCGCCGCTAATGACAAGACC
1 TTTAGCGGCGCTTTTCTAATAAGCGCCGCTAATGACAAGACC
* * **
26855722 TTTAGCGGTGCTTTTCT-ATAAGCGCCGTTAATGACCCGACC
1 TTTAGCGGCGCTTTTCTAATAAGCGCCGCTAATGACAAGACC
26855763 TTTAGCGGCGCTTT
1 TTTAGCGGCGCTTT
26855777 GTGGAAAGCG
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
40 2 0.02
41 71 0.59
42 42 0.35
43 5 0.04
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTCTAATAAGCGCCGCTAATGACAAGACC
Found at i:26861364 original size:20 final size:20
Alignment explanation
Indices: 26861322--26861364 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
26861312 ATCTTTTAAA
* **
26861322 AATTATATAATTATTCATTT
1 AATTATATAACTATTCAAGT
*
26861342 AATTTTATAACTATTCAAGT
1 AATTATATAACTATTCAAGT
26861362 AAT
1 AAT
26861365 ATTGTTTGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (20 bp):
AATTATATAACTATTCAAGT
Found at i:26866730 original size:34 final size:34
Alignment explanation
Indices: 26866685--26866772 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 34
26866675 AATTTCAACA
* * *
26866685 AAATAAAACAGTAGCAATA-AATATGCTTATAAC
1 AAATCAAACAGTAGCAAAATAATATACTTATAAC
26866718 AAATCAATACAGTAG-AAAATAATATACTTATAAC
1 AAATCAA-ACAGTAGCAAAATAATATACTTATAAC
*
26866752 AGATCAAATCAGTAGCTAAAA
1 AAATCAAA-CAGTAGC-AAAA
26866773 GTCATGCTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
33 10 0.22
34 32 0.70
36 4 0.09
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (34 bp):
AAATCAAACAGTAGCAAAATAATATACTTATAAC
Found at i:26870873 original size:136 final size:135
Alignment explanation
Indices: 26870621--26870901 Score: 499
Period size: 136 Copynumber: 2.1 Consensus size: 135
26870611 GCCACATAAT
*
26870621 CATGTCCCTGCACCTATTTCTCCCAAGCACACGCCCGTGTACTGGCCCGTGTGTCAGGCCGTGAG
1 CATGTCCCTGCACCTATTTCTCCCAAGCACACGCCCGTGTACTAGCCCGTGTGTCAGGCCGTGAG
*
26870686 TACATGTAAAATGTCAACAATAACATGCAAAATTTCCCTAGATTCCAATCAACATGTACCTCTAA
66 TACATGTAAAATGTCAACAATAACATGAAAAATTTCCCTAGATTCCAATCAACATGTACCTCTAA
26870751 CTTAA
131 CTTAA
26870756 CATGTACCCTGCACCTATTTCTCCCAAGCACACGCCCGTGTACTAGCCCGTGTGTCAGGCCGTGA
1 CATGT-CCCTGCACCTATTTCTCCCAAGCACACGCCCGTGTACTAGCCCGTGTGTCAGGCCGTGA
* * *
26870821 GTACCTGTAAAATGTCAATAATAACATGAAAAATTTCCCTAGATTCCTATCAACATGTACCTCTA
65 GTACATGTAAAATGTCAACAATAACATGAAAAATTTCCCTAGATTCCAATCAACATGTACCTCTA
26870886 ACTTAA
130 ACTTAA
26870892 CATAGTCCCT
1 CAT-GTCCCT
26870902 TTACGTATAA
Statistics
Matches: 139, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
135 5 0.04
136 132 0.95
137 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (135 bp):
CATGTCCCTGCACCTATTTCTCCCAAGCACACGCCCGTGTACTAGCCCGTGTGTCAGGCCGTGAG
TACATGTAAAATGTCAACAATAACATGAAAAATTTCCCTAGATTCCAATCAACATGTACCTCTAA
CTTAA
Found at i:26871535 original size:81 final size:81
Alignment explanation
Indices: 26871446--26871637 Score: 212
Period size: 81 Copynumber: 2.4 Consensus size: 81
26871436 ATCGAGAATC
* * *
26871446 CGCAACATATGCCAGA-CCTCAGCCATCGATACGATCCAT-TTTATCCACTCACAATGCTGCTCA
1 CGCAACATATG-CAGATACTCAGCCATCG-GACGATCAATATTTATCCACTCACAATGCTGCTCA
26871509 CACAAGCTGTCAAAAATT
64 CACAAGCTGTCAAAAATT
* * * * *
26871527 CGCAACATATGCAGATACTTAGCCATCGGAGGGTCAATATTTATCCACTCACGATGCTGCTTACA
1 CGCAACATATGCAGATACTCAGCCATCGGACGATCAATATTTATCCACTCACAATGCTGCTCACA
* *
26871592 CAAGCTGTTAAGAAACT
66 CAAGCTGTCAA-AAATT
* *
26871609 -ACAACATATGCAGA-ATCTTAGCCATCGGA
1 CGCAACATATGCAGATA-CTCAGCCATCGGA
26871638 GGGTCCTTAT
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
80 11 0.11
81 81 0.84
82 4 0.04
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (81 bp):
CGCAACATATGCAGATACTCAGCCATCGGACGATCAATATTTATCCACTCACAATGCTGCTCACA
CAAGCTGTCAAAAATT
Found at i:26871638 original size:81 final size:81
Alignment explanation
Indices: 26871485--26871642 Score: 239
Period size: 81 Copynumber: 2.0 Consensus size: 81
26871475 TACGATCCAT
* *
26871485 TTTATCCACTCACAATGCTGCTCACACAAGCTGTCAAAAATTCGCAACATATGCAGATACTTAGC
1 TTTATCCACTCACAATGCTGCTCACACAAGCTGTCAAAAACTCACAACATATGCAGATACTTAGC
26871550 CATCGGAGGGTCAATA
66 CATCGGAGGGTCAATA
* * *
26871566 TTTATCCACTCACGATGCTGCTTACACAAGCTGTTAAGAAACT-ACAACATATGCAGA-ATCTTA
1 TTTATCCACTCACAATGCTGCTCACACAAGCTGTCAA-AAACTCACAACATATGCAGATA-CTTA
26871629 GCCATCGGAGGGTC
64 GCCATCGGAGGGTC
26871643 CTTATATCAA
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
80 1 0.01
81 65 0.93
82 4 0.06
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (81 bp):
TTTATCCACTCACAATGCTGCTCACACAAGCTGTCAAAAACTCACAACATATGCAGATACTTAGC
CATCGGAGGGTCAATA
Found at i:26882029 original size:42 final size:42
Alignment explanation
Indices: 26881970--26882213 Score: 285
Period size: 42 Copynumber: 5.7 Consensus size: 42
26881960 CCGAGGCATA
** *
26881970 AGTCTTCCTTTCAAACATAATCTCACACTCATTCTTAGACATG
1 AGTCTTCCTTT-AAACATAATCTCATGCTCATTCTGAGACATG
* * *
26882013 AGTCTTCCTTTAAACATAATCTCTTTCTCATTCTAAGACATG
1 AGTCTTCCTTTAAACATAATCTCATGCTCATTCTGAGACATG
*
26882055 AGTCTTCCTTTAAACATAATCTCATTCTCA-TCTCGAGACATG
1 AGTCTTCCTTTAAACATAATCTCATGCTCATTCT-GAGACATG
* * * * *
26882097 AGTCTTCCCTTTTAAACATATTCTCATGCTTATTCCGAGTCACG
1 AGTCTT-CC-TTTAAACATAATCTCATGCTCATTCTGAGACATG
* *
26882141 AGTCTTCCTTTAAAC-TCATTCTCATGCTCATTTTGAGACATG
1 AGTCTTCCTTTAAACAT-AATCTCATGCTCATTCTGAGACATG
* *
26882183 AGTCTTCCTTTAAACATACTCTCGTGCTCAT
1 AGTCTTCCTTTAAACATAATCTCATGCTCAT
26882214 CCCGAGTCAC
Statistics
Matches: 176, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
41 4 0.02
42 123 0.70
43 16 0.09
44 31 0.18
45 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.38
Consensus pattern (42 bp):
AGTCTTCCTTTAAACATAATCTCATGCTCATTCTGAGACATG
Found at i:26882060 original size:23 final size:23
Alignment explanation
Indices: 26881997--26882060 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 23
26881987 TAATCTCACA
*
26881997 CTCATTCTTAGACATGAGTC-TT
1 CTCATTCTAAGACATGAGTCTTT
* *
26882019 C-C-TT-TAA-ACATAATCTCTTT
1 CTCATTCTAAGACATGA-GTCTTT
26882039 CTCATTCTAAGACATGAGTCTT
1 CTCATTCTAAGACATGAGTCTT
26882061 CCTTTAAACA
Statistics
Matches: 31, Mismatches: 5, Indels: 11
0.66 0.11 0.23
Matches are distributed among these distances:
18 5 0.16
19 4 0.13
20 5 0.16
21 2 0.06
22 3 0.10
23 7 0.23
24 5 0.16
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (23 bp):
CTCATTCTAAGACATGAGTCTTT
Found at i:26882232 original size:42 final size:42
Alignment explanation
Indices: 26881929--26882242 Score: 278
Period size: 42 Copynumber: 7.4 Consensus size: 42
26881919 TAGGTTCATA
* * * *
26881929 AGTCTTCCCTTTTAAAC--AATCTTATGCTC-TACCGAGGCATA
1 AGTCTT-CC-TTTAAACATAATCTCATGCTCATTCCGAGACATG
** **
26881970 AGTCTTCCTTTCAAACATAATCTCACACTCATTCTTAGACATG
1 AGTCTTCCTTT-AAACATAATCTCATGCTCATTCCGAGACATG
* * **
26882013 AGTCTTCCTTTAAACATAATCTCTTTCTCATTCTAAGACATG
1 AGTCTTCCTTTAAACATAATCTCATGCTCATTCCGAGACATG
*
26882055 AGTCTTCCTTTAAACATAATCTCATTCTCA-TCTCGAGACATG
1 AGTCTTCCTTTAAACATAATCTCATGCTCATTC-CGAGACATG
* * * *
26882097 AGTCTTCCCTTTTAAACATATTCTCATGCTTATTCCGAGTCACG
1 AGTCTT-CC-TTTAAACATAATCTCATGCTCATTCCGAGACATG
* **
26882141 AGTCTTCCTTTAAAC-TCATTCTCATGCTCATTTTGAGACATG
1 AGTCTTCCTTTAAACAT-AATCTCATGCTCATTCCGAGACATG
* * * * *
26882183 AGTCTTCCTTTAAACATACTCTCGTGCTCATCCCGAGTCACG
1 AGTCTTCCTTTAAACATAATCTCATGCTCATTCCGAGACATG
* *
26882225 AGCCTTCCATTTATACAT
1 AGTCTTCC-TTTAAACAT
26882243 CAAGTGTTTC
Statistics
Matches: 228, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.01
40 6 0.03
41 9 0.04
42 145 0.64
43 31 0.14
44 32 0.14
45 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.10, T:0.37
Consensus pattern (42 bp):
AGTCTTCCTTTAAACATAATCTCATGCTCATTCCGAGACATG
Found at i:26886442 original size:14 final size:16
Alignment explanation
Indices: 26886402--26886445 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
26886392 TCTTCAACAT
*
26886402 AAATTAAACTGAATTCA
1 AAATTAAA-TAAATTCA
26886419 AAATTAAATAAATT-A
1 AAATTAAATAAATTCA
26886434 AAA-TAAATAAAT
1 AAATTAAATAAAT
26886446 ATGGGTTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 5 0.19
17 8 0.31
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (16 bp):
AAATTAAATAAATTCA
Found at i:26889265 original size:18 final size:17
Alignment explanation
Indices: 26889242--26889290 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
26889232 GGGTTTAGTG
*
26889242 ATAAAGATAATAATATAT
1 ATAAAGATAA-AATAAAT
26889260 ATAAAGA-AAAATAAAT
1 ATAAAGATAAAATAAAT
*
26889276 ATAAA-ATAAAGTAAA
1 ATAAAGATAAAATAAA
26889291 GTAAAAACGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 18 0.64
17 2 0.07
18 7 0.25
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.24
Consensus pattern (17 bp):
ATAAAGATAAAATAAAT
Found at i:26890909 original size:29 final size:28
Alignment explanation
Indices: 26890877--26890957 Score: 99
Period size: 29 Copynumber: 2.9 Consensus size: 28
26890867 AATTCTAGAT
*
26890877 AAAACTATAAAATTTGTAAAATAGGGGAC
1 AAAACTATAAAATTTGAAAAATAGGGG-C
* * * *
26890906 AAAATTGTAAAATCTAAAAAATAGGGGC
1 AAAACTATAAAATTTGAAAAATAGGGGC
*
26890934 AAAACTATAAAACTTGAAAAATAG
1 AAAACTATAAAATTTGAAAAATAG
26890958 AGCACATGGT
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 20 0.48
29 22 0.52
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (28 bp):
AAAACTATAAAATTTGAAAAATAGGGGC
Found at i:26891217 original size:13 final size:13
Alignment explanation
Indices: 26891199--26891223 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26891189 GAGACATGGT
26891199 CATGTGGTCCACC
1 CATGTGGTCCACC
26891212 CATGTGGTCCAC
1 CATGTGGTCCAC
26891224 ATGCTTGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.24, T:0.24
Consensus pattern (13 bp):
CATGTGGTCCACC
Found at i:26893482 original size:14 final size:14
Alignment explanation
Indices: 26893463--26893510 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
26893453 TGTCTAGGCT
26893463 AAACCAAATAAAAA
1 AAACCAAATAAAAA
* *
26893477 AAACCAAATCCAAAT
1 AAACCAAAT-AAAAA
*
26893492 AAACCAAAAAAAATA
1 AAACCAAATAAAA-A
26893507 AAAC
1 AAAC
26893511 TTTAAATTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.73, C:0.19, G:0.00, T:0.08
Consensus pattern (14 bp):
AAACCAAATAAAAA
Found at i:26895110 original size:29 final size:28
Alignment explanation
Indices: 26895049--26895111 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
26895039 TTATTTTAGG
26895049 TTTTTAAATTACATCCTTTTTTTCTTCCC
1 TTTTTAAATTACATCCTTTTTTTCTT-CC
* *
26895078 TTTTCAAATTGA-ATCCTATTTTTT-TTCT
1 TTTTTAAATT-ACATCCT-TTTTTTCTTCC
26895106 TTTTTA
1 TTTTTA
26895112 TTTATTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 6 0.21
29 16 0.55
30 7 0.24
ACGTcount: A:0.19, C:0.17, G:0.02, T:0.62
Consensus pattern (28 bp):
TTTTTAAATTACATCCTTTTTTTCTTCC
Found at i:26895386 original size:283 final size:279
Alignment explanation
Indices: 26894879--26895446 Score: 1050
Period size: 283 Copynumber: 2.0 Consensus size: 279
26894869 TAAAAACTCG
*
26894879 ATTTTTACCCCCATTTTTTCTTATTTTTTAATTTTTACTTTCAATTTTAATTTTTTTAATTTAAT
1 ATTTTTACCCCCATTTTTTCTTATTTTTTAATTTTTACTTTCAATTTTAATTTTTTAAATTTAAT
26894944 CCTCAGATTTTTTCTTCCTTTTAAAATTACCCCTTTTATTTCCATTTTGTTTTAATTTAATCCCC
66 CCTCAGATTTTTTCTTCCTTTTAAAATTACCCCTTTTATTTCCATTTTGTTTTAATTTAATCCCC
26895009 ACTATTTTATTTTATTTAAAAATAACCCCATTATTTTAGGTTTTTAAATTACATCCTTTTTTTCT
131 ACTATTTTATTTTATTTAAAAATAACCCCATTATTTTAGGTTTTTAAATTACATCCTTTTTTTCT
26895074 TCCCTTTTCAAATTGAATCCTATTTTTTTTCTTTTTTATTTATTTAATATTTTATTTTATGTTAT
196 TCCCTTTTCAAATTGAATCCTATTTTTTTTCTTTTTTATTTATTTAATATTTTATTTTATGTTAT
*
26895139 TTTTAACCAGTTTTTTTATTT
261 TTTCAACCAG-TTTTTTA-TT
26895160 ATTTTTACCCCCATTTTTTCTTATTTTTTAATTTTTACTTTCAATTTTAATTTTTTAAATTTAAT
1 ATTTTTACCCCCATTTTTTCTTATTTTTTAATTTTTACTTTCAATTTTAATTTTTTAAATTTAAT
26895225 CCTCA-ATTTTTTTTTCTTCCTTTTAAAATTACCCCTTTTATTTCCATTTTGTTTTAATTTAATC
66 CCTCAGA---TTTTTTCTTCCTTTTAAAATTACCCCTTTTATTTCCATTTTGTTTTAATTTAATC
26895289 CCCACTATTTTATTTTATTTAAAAATAACCCCATTATTTTAGGTTTTTTAAATTACATCCTTTTT
128 CCCACTATTTTATTTTATTTAAAAATAACCCCATTATTTTAGG-TTTTTAAATTACATCCTTTTT
26895354 TTCTTCCCTTTTCAAATTGAATCCTA-TTTTTTTCTTTTTTATTTATTTAATATTTTATTTTATG
192 TTCTTCCCTTTTCAAATTGAATCCTATTTTTTTTCTTTTTTATTTATTTAATATTTTATTTTATG
26895418 TTATTTTCAACCAGTTTTTTATT
257 TTATTTTCAACCAGTTTTTTATT
26895441 ATTTTT
1 ATTTTT
26895447 TTATTATATA
Statistics
Matches: 281, Mismatches: 2, Indels: 8
0.97 0.01 0.03
Matches are distributed among these distances:
280 1 0.00
281 77 0.27
282 7 0.02
283 149 0.53
284 47 0.17
ACGTcount: A:0.23, C:0.15, G:0.02, T:0.60
Consensus pattern (279 bp):
ATTTTTACCCCCATTTTTTCTTATTTTTTAATTTTTACTTTCAATTTTAATTTTTTAAATTTAAT
CCTCAGATTTTTTCTTCCTTTTAAAATTACCCCTTTTATTTCCATTTTGTTTTAATTTAATCCCC
ACTATTTTATTTTATTTAAAAATAACCCCATTATTTTAGGTTTTTAAATTACATCCTTTTTTTCT
TCCCTTTTCAAATTGAATCCTATTTTTTTTCTTTTTTATTTATTTAATATTTTATTTTATGTTAT
TTTCAACCAGTTTTTTATT
Found at i:26895466 original size:17 final size:18
Alignment explanation
Indices: 26895437--26895481 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
26895427 ACCAGTTTTT
* *
26895437 TATTATTTTTTTATTATA
1 TATTATTTATTTATCATA
*
26895455 TA-TATTTATTTATCATT
1 TATTATTTATTTATCATA
26895472 TATTATTTAT
1 TATTATTTAT
26895482 GCAATCTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (18 bp):
TATTATTTATTTATCATA
Found at i:26896627 original size:685 final size:684
Alignment explanation
Indices: 26895315--26897343 Score: 3559
Period size: 685 Copynumber: 3.0 Consensus size: 684
26895305 ATTTAAAAAT
* *
26895315 AACCCCATTATTTTAGG-TTTTTTAAATTACATCCTTTTTTTCTTCCCTTTTCAAATTGAATCCT
1 AACCCCATTATTTTAGGTTTTTTTAAATTAAAT-CATTTTTTCTTCCCTTTTCAAATTGAATCCT
* * *
26895379 A--TTTT-TTTCTTTTTTATTTATTTAATATTTTATTTTATGTTATTTTCAACCAGTTTTTTATT
65 ATTTTTTATTTCTTTTTTATTTATTTAATATTTTATTCTATGTTATTTTCAACCCGTGTTTT-TT
* *
26895441 ATTTTTTTATTATATATATTTATTTATCATTTATTATTTATGCAATCTG-AATTTATTTATATTT
129 A--TTTTTATTTTATATATTTATTTATCATTTATTATTTATGCAAT-TGCATTTTATTTAT-TTT
** * *
26895505 T-TCATCAATTGCATATTCATATTTTATTTAATTTTCGTGTTCATTTTTCTTTAAAATGTTTTAG
190 TGTCATCAATTGCATATTTGTATTTTATTTAATTTTCGCGTTCATTTTTCATTAAAATGTTTTAG
* * * * *
26895569 TTAAAATTGATTTTCCGATTTTCTCCATAATACATAAATAATTTTAAAATCGAGGCAATGTTCCT
255 CTAAAATTGTTTTTCGGATTTTCTTCATAATACATAAATAATTTCAAAATC-A--CAATGTTCCT
* * * * * *
26895634 TTTTTCGGAATTTT-AAAAAAAAATCATGCATTAATTCACTAGGTGCGATTTTTTCTATTCGAAC
317 TTTTTCGGGATTTTAAAAAAAAAATCGTTCCTTAATTCACTAGGTGCGATTTTTTCTCTTCGAAT
26895698 CGAAATAATCGAGTACCTTAAATTATTTCAAAAAACGAGGCAATATCCTTATGCATAAAGGATTT
382 CGAAATAATCGAGTACCTTAAATTATTTCAAAAAACGAGGCAATATCCTTATGCATAAAGGATTT
26895763 GAAAAATTATGCCCTAACGTACTGGGTATGCTTTTTCGTTGAATTTACATAATCGAATATCCTAT
447 GAAAAATTATGCCCTAACGTACTGGGTATGCTTTTTCGTTGAATTTACATAATCGAATATCCTAT
26895828 TTTTAAATTTTTAAATGTTCGTTAATTTCGAAGCTTCGAGAATGTTGTGCCATAACATCTTGGAC
512 TTTTAAATTTTTAAATGTTCGTTAATTTCGAAGCTTCGAGAATGTTGTGCCATAACATCTTGGAC
26895893 ACGACTTCAATTTCCCGATTAATTAGAAACAAACGGGAATTTTTCTCATCAAATTAAATTTTTAA
577 ACGACTTCAATTTCCCGATTAATTAGAAACAAACGGGAATTTTTCTCATCAAATTAAATTTTTAA
26895958 AAATTACACTAAATAATTTTAGGTTTTTTTTTTATCAATTAAAC
642 AAATTACACTAAATAATTTTAGG-TTTTTTTTTATCAATTAAAC
26896002 AACCCCATTATTTTAGGTTTTTTTAAATTAAATCATTTTTTCTTCCCTTTTCAAATTGAATCCTA
1 AACCCCATTATTTTAGGTTTTTTTAAATTAAATCATTTTTTCTTCCCTTTTCAAATTGAATCCTA
26896067 TTTTTTATTTCTTTTTTATTTATTTAATATTTTATTCTATGTTATTTTCAACCCGTGTTTTTTAT
66 TTTTTTATTTCTTTTTTATTTATTTAATATTTTATTCTATGTTATTTTCAACCCGTGTTTTTTAT
26896132 TTTTATTTTATATATTTATTTATCATTTATTATTTATGCAATTGCATTTTATTTATTTTTGTCAT
131 TTTTATTTTATATATTTATTTATCATTTATTATTTATGCAATTGCATTTTATTTATTTTTGTCAT
26896197 CAATTGCATATTTGTATTTTATTTAATTTTCGCGTTCATTTTTCATTAAAATGTTTTAGCTAAAA
196 CAATTGCATATTTGTATTTTATTTAATTTTCGCGTTCATTTTTCATTAAAATGTTTTAGCTAAAA
26896262 TTGTTTTTCGGATTTTCTTCATAATACATAAATAATTTCAAAATCACAATGTTCCTTTTTTCGGG
261 TTGTTTTTCGGATTTTCTTCATAATACATAAATAATTTCAAAATCACAATGTTCCTTTTTTCGGG
*
26896327 ATTTTAAAAAAAAAATCGTTCCTTAATTCACTAGGTGCGATTTTTTCTCTTCGAATCAAAATAAT
326 ATTTTAAAAAAAAAATCGTTCCTTAATTCACTAGGTGCGATTTTTTCTCTTCGAATCGAAATAAT
26896392 CGAGTACCTTAAATTATTTCAAAAAACGAGGCAATATCCTTATGCATAAAGGATTTGAAAAATTA
391 CGAGTACCTTAAATTATTTCAAAAAACGAGGCAATATCCTTATGCATAAAGGATTTGAAAAATTA
*
26896457 TGCCCTAACGTATTGGGTATGCTTTTTCGTTGAATTTACATAATCGAATATCCTATTTTTAAATT
456 TGCCCTAACGTACTGGGTATGCTTTTTCGTTGAATTTACATAATCGAATATCCTATTTTTAAATT
26896522 TTTAAATGTTCGTTAATTTCGAAGCTTCGAGAATGTTGTGCCATAACATCTTGGACACGACTTCA
521 TTTAAATGTTCGTTAATTTCGAAGCTTCGAGAATGTTGTGCCATAACATCTTGGACACGACTTCA
26896587 ATTTCCCGATTAATTAGAAACAAACGGGAATTTTTCTCATCAAATTAAATTTTTAAAAATTACAC
586 ATTTCCCGATTAATTAGAAACAAACGGGAATTTTTCTCATCAAATTAAATTTTTAAAAATTACAC
26896652 TAAATAATTTTAGGTTTTTTTTTATCAATTAAAC
651 TAAATAATTTTAGGTTTTTTTTTATCAATTAAAC
26896686 AACCCCATTATTTTAGGTTTTTTTAAATTAAATCATTTTTTCTTCCCTTTTCAAATTGAATCCTA
1 AACCCCATTATTTTAGGTTTTTTTAAATTAAATCATTTTTTCTTCCCTTTTCAAATTGAATCCTA
26896751 TTTTTTTATTTCTTTTTTATTTATTTAATATTTTATTCTATGTTATTTTCAACCCGTGTTTTTTA
66 -TTTTTTATTTCTTTTTTATTTATTTAATATTTTATTCTATGTTATTTTCAACCCGTGTTTTTTA
26896816 TTTTTATTTTATATATTTATTTATCATTTATTATTTATGCAATTGCATTTTATTTATTTTTGTCA
130 TTTTTATTTTATATATTTATTTATCATTTATTATTTATGCAATTGCATTTTATTTATTTTTGTCA
26896881 TCAATTGCATATTTGTATTTTATTTAATTTTCGCGTTCATTTTTCATTAAAATGTTTTAGCTAAA
195 TCAATTGCATATTTGTATTTTATTTAATTTTCGCGTTCATTTTTCATTAAAATGTTTTAGCTAAA
26896946 ATTGTTTTTCGGATTTTCTTCATAATACATAAATAATTTCAAAATCACAATGTTCCTTTTTTCGG
260 ATTGTTTTTCGGATTTTCTTCATAATACATAAATAATTTCAAAATCACAATGTTCCTTTTTTCGG
*
26897011 GATTTTAAAAAAAAAATCGTTTCTTAATTCACTAGGTGCGATTTTTTCTCTTCGAATCGAAATAA
325 GATTTTAAAAAAAAAATCGTTCCTTAATTCACTAGGTGCGATTTTTTCTCTTCGAATCGAAATAA
**
26897076 TCGAGTACCTTAAATTATTTCAAAAAACGAGGCAATATCCTTATGCATAAAGGATTCCAAAAATT
390 TCGAGTACCTTAAATTATTTCAAAAAACGAGGCAATATCCTTATGCATAAAGGATTTGAAAAATT
*
26897141 ATGCCCTAACGTACTGGGTATACTTTTTCGTTGAATTTACATAATCGAATATCCTATTTTTAAAT
455 ATGCCCTAACGTACTGGGTATGCTTTTTCGTTGAATTTACATAATCGAATATCCTATTTTTAAAT
* * * * *
26897206 TTTTAAATGTCCGTTAATTTCGAATCTTCGAGAATGTTATGCCCTAACATCTTGGACAAGACTTC
520 TTTTAAATGTTCGTTAATTTCGAAGCTTCGAGAATGTTGTGCCATAACATCTTGGACACGACTTC
* * * * * *
26897271 AATTTCCTGATTAATTCGAAACAAATGGGCATTTTTCTCATCAAATTCAATTTTTGAAAATTACA
585 AATTTCCCGATTAATTAGAAACAAACGGGAATTTTTCTCATCAAATTAAATTTTTAAAAATTACA
26897336 CTAAATAA
650 CTAAATAA
26897344 ATCATGCATT
Statistics
Matches: 1293, Mismatches: 41, Indels: 18
0.96 0.03 0.01
Matches are distributed among these distances:
684 108 0.08
685 901 0.70
686 7 0.01
687 205 0.16
688 14 0.01
689 7 0.01
690 51 0.04
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (684 bp):
AACCCCATTATTTTAGGTTTTTTTAAATTAAATCATTTTTTCTTCCCTTTTCAAATTGAATCCTA
TTTTTTATTTCTTTTTTATTTATTTAATATTTTATTCTATGTTATTTTCAACCCGTGTTTTTTAT
TTTTATTTTATATATTTATTTATCATTTATTATTTATGCAATTGCATTTTATTTATTTTTGTCAT
CAATTGCATATTTGTATTTTATTTAATTTTCGCGTTCATTTTTCATTAAAATGTTTTAGCTAAAA
TTGTTTTTCGGATTTTCTTCATAATACATAAATAATTTCAAAATCACAATGTTCCTTTTTTCGGG
ATTTTAAAAAAAAAATCGTTCCTTAATTCACTAGGTGCGATTTTTTCTCTTCGAATCGAAATAAT
CGAGTACCTTAAATTATTTCAAAAAACGAGGCAATATCCTTATGCATAAAGGATTTGAAAAATTA
TGCCCTAACGTACTGGGTATGCTTTTTCGTTGAATTTACATAATCGAATATCCTATTTTTAAATT
TTTAAATGTTCGTTAATTTCGAAGCTTCGAGAATGTTGTGCCATAACATCTTGGACACGACTTCA
ATTTCCCGATTAATTAGAAACAAACGGGAATTTTTCTCATCAAATTAAATTTTTAAAAATTACAC
TAAATAATTTTAGGTTTTTTTTTATCAATTAAAC
Found at i:26900334 original size:11 final size:10
Alignment explanation
Indices: 26900318--26900351 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
26900308 AGAGGAGCTC
26900318 AAAAAAAGAA
1 AAAAAAAGAA
*
26900328 GAAAAAAGAA
1 AAAAAAAGAA
26900338 AAAGAAAAGAA
1 AAA-AAAAGAA
26900349 AAA
1 AAA
26900352 GGGTCGAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:26901327 original size:7 final size:7
Alignment explanation
Indices: 26901317--26901371 Score: 71
Period size: 7 Copynumber: 8.3 Consensus size: 7
26901307 AAAAAAAAAG
26901317 AAGAAGA
1 AAGAAGA
26901324 AAGAAG-
1 AAGAAGA
26901330 AAGAAGA
1 AAGAAGA
*
26901337 AAAAAGA
1 AAGAAGA
*
26901344 AAAAAGA
1 AAGAAGA
26901351 AAGAAGA
1 AAGAAGA
26901358 AAGAA-A
1 AAGAAGA
26901364 AA-AAGA
1 AAGAAGA
26901370 AA
1 AA
26901372 AAGGAGTGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
5 2 0.05
6 12 0.27
7 30 0.68
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (7 bp):
AAGAAGA
Found at i:26901332 original size:13 final size:13
Alignment explanation
Indices: 26901314--26901370 Score: 64
Period size: 13 Copynumber: 4.4 Consensus size: 13
26901304 TAAAAAAAAA
26901314 AAGAAGAAGAAAG
1 AAGAAGAAGAAAG
*
26901327 AAGAAGAAGAAAA
1 AAGAAGAAGAAAG
*
26901340 AAGAAAAAAGAAAG
1 AAG-AAGAAGAAAG
26901354 AAGAAAGAA-AAA-
1 AAG-AAGAAGAAAG
26901366 AAGAA
1 AAGAA
26901371 AAAGGAGTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
11 2 0.05
12 3 0.08
13 18 0.46
14 16 0.41
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAAG
Found at i:26901350 original size:27 final size:26
Alignment explanation
Indices: 26901309--26901373 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
26901299 TCACATAAAA
*
26901309 AAAAAAAG-AAGAAGAAAGAAG-AAG
1 AAAAAAAGAAAAAAGAAAGAAGAAAG
26901333 AAGAAAAAAGAAAAAAGAAAGAAGAAAG
1 -A-AAAAAAGAAAAAAGAAAGAAGAAAG
26901361 AAAAAAAGAAAAA
1 AAAAAAAGAAAAA
26901374 GGAGTGTTCG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
25 1 0.03
26 19 0.53
27 13 0.36
28 3 0.08
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (26 bp):
AAAAAAAGAAAAAAGAAAGAAGAAAG
Found at i:26901372 original size:7 final size:7
Alignment explanation
Indices: 26901305--26901373 Score: 61
Period size: 7 Copynumber: 9.7 Consensus size: 7
26901295 AATTTCACAT
*
26901305 AAAAAAA
1 AAAAAAG
26901312 AAAAGAAG
1 AAAA-AAG
*
26901320 AAGAAAG
1 AAAAAAG
26901327 AAGAAGAAG
1 AA-AA-AAG
26901336 AAAAAAG
1 AAAAAAG
26901343 AAAAAAG
1 AAAAAAG
*
26901350 AAAGAAG
1 AAAAAAG
*
26901357 -AAAGA-
1 AAAAAAG
26901362 AAAAAAG
1 AAAAAAG
26901369 AAAAA
1 AAAAA
26901374 GGAGTGTTCG
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
6 7 0.14
7 30 0.60
8 8 0.16
9 5 0.10
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:26904622 original size:14 final size:14
Alignment explanation
Indices: 26904603--26904632 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26904593 GTATTATAGA
26904603 ATTAACTAGTTTGT
1 ATTAACTAGTTTGT
26904617 ATTAACTAGTTTGT
1 ATTAACTAGTTTGT
26904631 AT
1 AT
26904633 GTATGTGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (14 bp):
ATTAACTAGTTTGT
Found at i:26904834 original size:16 final size:16
Alignment explanation
Indices: 26904815--26904845 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26904805 TTATTAATTT
*
26904815 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
26904831 TATTTAATATTAAAA
1 TATTTAATATTAAAA
26904846 TAATACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:26906883 original size:8 final size:9
Alignment explanation
Indices: 26906859--26906894 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
26906849 GGGTTTACCC
26906859 ACAATTAAA
1 ACAATTAAA
26906868 ACAATTAAA
1 ACAATTAAA
26906877 A-AATTAAA
1 ACAATTAAA
26906885 ACAAGTTAAA
1 ACAA-TTAAA
26906895 CACTAACACT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.32
9 12 0.48
10 5 0.20
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.22
Consensus pattern (9 bp):
ACAATTAAA
Found at i:26906883 original size:17 final size:18
Alignment explanation
Indices: 26906861--26906894 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
26906851 GTTTACCCAC
26906861 AATTAAAACAA-TTAAAA
1 AATTAAAACAAGTTAAAA
26906878 AATTAAAACAAGTTAAA
1 AATTAAAACAAGTTAAA
26906895 CACTAACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (18 bp):
AATTAAAACAAGTTAAAA
Found at i:26908012 original size:30 final size:28
Alignment explanation
Indices: 26907978--26908054 Score: 86
Period size: 30 Copynumber: 2.7 Consensus size: 28
26907968 ATTGGAAATT
*
26907978 AAAATTATTTAATAATTTTATTATTTCAA
1 AAAAATATTTAATAATTTTA-TATTTCAA
* *
26908007 AAAAATAATTTTAATAATTTCATATTTTAA
1 AAAAAT-A-TTTAATAATTTTATATTTCAA
26908037 AAAAA-A-TTAATAATTTTA
1 AAAAATATTTAATAATTTTA
26908055 AAATAATTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
26 11 0.26
28 1 0.02
29 5 0.12
30 13 0.31
31 12 0.29
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (28 bp):
AAAAATATTTAATAATTTTATATTTCAA
Found at i:26908042 original size:31 final size:31
Alignment explanation
Indices: 26907985--26908043 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
26907975 ATTAAAATTA
* *
26907985 TTTAATAATTTTATTATTTCAAAAAAATAAT
1 TTTAATAATTTCATTATTTAAAAAAAATAAT
26908016 TTTAATAATTTCA-TATTTTAAAAAAAAT
1 TTTAATAATTTCATTA-TTTAAAAAAAAT
26908044 TAATAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 23 0.92
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (31 bp):
TTTAATAATTTCATTATTTAAAAAAAATAAT
Found at i:26913302 original size:21 final size:21
Alignment explanation
Indices: 26913267--26913317 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
26913257 GGATTATGTA
*
26913267 ATTTGGATTTATAAACATTAT
1 ATTTCGATTTATAAACATTAT
* * *
26913288 GTTTCGATTTCTAAACTTTAT
1 ATTTCGATTTATAAACATTAT
*
26913309 ATTTGGATT
1 ATTTCGATT
26913318 ATGCTATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.51
Consensus pattern (21 bp):
ATTTCGATTTATAAACATTAT
Found at i:26914148 original size:21 final size:21
Alignment explanation
Indices: 26914121--26914171 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
26914111 GGATTATGTA
26914121 ATTTGGATTTATAAACTTTAT
1 ATTTGGATTTATAAACTTTAT
* *
26914142 GTTTGGATTTCTAAACTTTAT
1 ATTTGGATTTATAAACTTTAT
*
26914163 ACTTGGATT
1 ATTTGGATT
26914172 ACACTATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (21 bp):
ATTTGGATTTATAAACTTTAT
Found at i:26914944 original size:21 final size:21
Alignment explanation
Indices: 26914917--26914967 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
26914907 GGATTATGTA
26914917 ATTTGGATTTATAAACTTTAT
1 ATTTGGATTTATAAACTTTAT
* *
26914938 GTTTGGATTTCTAAACTTTAT
1 ATTTGGATTTATAAACTTTAT
*
26914959 ACTTGGATT
1 ATTTGGATT
26914968 ATGCTATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (21 bp):
ATTTGGATTTATAAACTTTAT
Found at i:26915435 original size:23 final size:23
Alignment explanation
Indices: 26915409--26915533 Score: 94
Period size: 24 Copynumber: 5.3 Consensus size: 23
26915399 CACATTCTGA
*
26915409 GTTCGCATGTTAACACATATAGG
1 GTTCGCATGATAACACATATAGG
** *
26915432 GTTCGCACAAT-ACTTACATGTAGG
1 GTTCGCATGATAAC--ACATATAGG
* *
26915456 GTTTGCATGTTAACACATATAGG
1 GTTCGCATGATAACACATATAGG
* *
26915479 GTTTGCAT-AGT-ACTTACATGTAGG
1 GTTCGCATGA-TAAC--ACATATAGG
*
26915503 GTTCGCATGATAACACTTATAAGG
1 GTTCGCATGATAACACATAT-AGG
26915527 GTTCGCA
1 GTTCGCA
26915534 CAGTATTACA
Statistics
Matches: 79, Mismatches: 14, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
22 4 0.05
23 29 0.37
24 41 0.52
25 5 0.06
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (23 bp):
GTTCGCATGATAACACATATAGG
Found at i:26915493 original size:47 final size:47
Alignment explanation
Indices: 26915409--26915552 Score: 209
Period size: 47 Copynumber: 3.1 Consensus size: 47
26915399 CACATTCTGA
*
26915409 GTTCGCATGTTAACACATATAGGGTTCGCACAATACTTACATGTAGG
1 GTTCGCATGTTAACACATATAGGGTTCGCACAGTACTTACATGTAGG
* * *
26915456 GTTTGCATGTTAACACATATAGGGTTTGCATAGTACTTACATGTAGG
1 GTTCGCATGTTAACACATATAGGGTTCGCACAGTACTTACATGTAGG
* * *
26915503 GTTCGCATGATAACACTTATAAGGGTTCGCACAGTA-TTACATGTAAG
1 GTTCGCATGTTAACACATAT-AGGGTTCGCACAGTACTTACATGTAGG
26915550 GTT
1 GTT
26915553 GGCAACTAAG
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 73 0.85
48 13 0.15
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (47 bp):
GTTCGCATGTTAACACATATAGGGTTCGCACAGTACTTACATGTAGG
Found at i:26915549 original size:24 final size:23
Alignment explanation
Indices: 26915476--26915550 Score: 55
Period size: 24 Copynumber: 3.1 Consensus size: 23
26915466 TAACACATAT
*
26915476 AGGGTTTGCATAGTACTTACATGT-
1 AGGGTTCGCA-AGTA-TTACATGTA
* * *
26915500 AGGGTTCGCATG-ATAACACTTATA
1 AGGGTTCGCAAGTATTACA--TGTA
26915524 AGGGTTCGCACAGTATTACATGTA
1 AGGGTTCGCA-AGTATTACATGTA
26915548 AGG
1 AGG
26915551 TTGGCAACTA
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
21 4 0.10
22 1 0.03
23 3 0.08
24 25 0.64
25 1 0.03
26 5 0.13
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (23 bp):
AGGGTTCGCAAGTATTACATGTA
Found at i:26915597 original size:30 final size:30
Alignment explanation
Indices: 26915561--26915763 Score: 116
Period size: 30 Copynumber: 6.9 Consensus size: 30
26915551 TTGGCAACTA
* *
26915561 AGGGTTCATACATACAAGGTTCGCACACCT
1 AGGGTTCGTACATACAAGGTTTGCACACCT
* * *
26915591 AGGGTTCGCACATACAAGTTTTACACACCT
1 AGGGTTCGTACATACAAGGTTTGCACACCT
* *
26915621 AGGGTTTGTAGC-TACAAGGTTTGCACACGT
1 AGGGTTCGTA-CATACAAGGTTTGCACACCT
* * * * *
26915651 AGCGTTCGCACAT-CTAA-GTTCGCATATAC-
1 AGGGTTCGTACATAC-AAGGTTTGCACA-CCT
* * * * * *
26915680 AGTGTTCGCACA-CCTAGGGTT-CACACAT
1 AGGGTTCGTACATACAAGGTTTGCACACCT
* * **
26915708 ACGGGTTCGCACATA-TAGGTTCACACACCT
1 A-GGGTTCGTACATACAAGGTTTGCACACCT
26915738 AGGGTTCGTACATACAA-GTTTGCACA
1 AGGGTTCGTACATACAAGGTTTGCACA
26915764 TCTGGAGTTC
Statistics
Matches: 129, Mismatches: 33, Indels: 23
0.70 0.18 0.12
Matches are distributed among these distances:
28 5 0.04
29 57 0.44
30 66 0.51
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (30 bp):
AGGGTTCGTACATACAAGGTTTGCACACCT
Found at i:26915740 original size:14 final size:15
Alignment explanation
Indices: 26915683--26915744 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 15
26915673 CATATACAGT
*
26915683 GTTCGCACACCTAGG
1 GTTCACACACCTAGG
26915698 GTTCACACA--TACGG
1 GTTCACACACCTA-GG
* **
26915712 GTTCGCACATATA-G
1 GTTCACACACCTAGG
26915726 GTTCACACACCTAGG
1 GTTCACACACCTAGG
26915741 GTTC
1 GTTC
26915745 GTACATACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 2 0.05
14 21 0.55
15 13 0.34
16 2 0.05
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (15 bp):
GTTCACACACCTAGG
Found at i:26915763 original size:43 final size:43
Alignment explanation
Indices: 26915644--26915764 Score: 118
Period size: 43 Copynumber: 2.8 Consensus size: 43
26915634 ACAAGGTTTG
* * * * * *
26915644 CACACGTAGCGTTCGCACAT-CTAAGTTCGCATATACAGTGTTCG
1 CACACCTAGGGTTCACACATAC-AAGTTCGCACATATAG-GTTCA
**
26915688 CACACCTAGGGTTCACACATACGGGTTCGCACATATAGGTTCA
1 CACACCTAGGGTTCACACATACAAGTTCGCACATATAGGTTCA
** *
26915731 CACACCTAGGGTTCGTACATACAAGTTTGCACAT
1 CACACCTAGGGTTCACACATACAAGTTCGCACAT
26915765 CTGGAGTTCA
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
43 33 0.52
44 29 0.46
45 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (43 bp):
CACACCTAGGGTTCACACATACAAGTTCGCACATATAGGTTCA
Found at i:26915811 original size:12 final size:14
Alignment explanation
Indices: 26915782--26915813 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
26915772 TCATCTAAAG
26915782 GGTTCGCACATACT
1 GGTTCGCACATACT
26915796 GGTTCGCA-AT-CT
1 GGTTCGCACATACT
26915808 GGTTCG
1 GGTTCG
26915814 TATCAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 2 0.11
14 8 0.44
ACGTcount: A:0.16, C:0.25, G:0.28, T:0.31
Consensus pattern (14 bp):
GGTTCGCACATACT
Found at i:26915919 original size:29 final size:29
Alignment explanation
Indices: 26915860--26915930 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
26915850 AAGGTTTTAA
* *
26915860 ATATAGGTTCGCAT-TAAGGGGTTTGCCT
1 ATATGGGTTCGCATATAAGGAGTTTGCCT
*
26915888 ATATGGGTTCGCATATAATGAGTTTGCCT
1 ATATGGGTTCGCATATAAGGAGTTTGCCT
*
26915917 ATA-GAGTTCGCATA
1 ATATGGGTTCGCATA
26915931 CAAGAGGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 23 0.61
29 15 0.39
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (29 bp):
ATATGGGTTCGCATATAAGGAGTTTGCCT
Found at i:26916148 original size:21 final size:21
Alignment explanation
Indices: 26916122--26916162 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
26916112 TAAATATAAC
26916122 TACAACACATGGTAATTTAAT
1 TACAACACATGGTAATTTAAT
*
26916143 TACAACACGTGGTAATTTAA
1 TACAACACATGGTAATTTAA
26916163 ATCTTGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (21 bp):
TACAACACATGGTAATTTAAT
Found at i:26918389 original size:23 final size:23
Alignment explanation
Indices: 26918310--26918386 Score: 118
Period size: 23 Copynumber: 3.3 Consensus size: 23
26918300 CTATAGAAGC
* *
26918310 CATTCATTATTTGCCACAAAAGT
1 CATTCATTATTTTCCACAAAGGT
*
26918333 CATTCATTATTTTCCACAAAGGC
1 CATTCATTATTTTCCACAAAGGT
*
26918356 CATTCATTGTTTTCCACAAAGGT
1 CATTCATTATTTTCCACAAAGGT
26918379 CATTCATT
1 CATTCATT
26918387 GTTGTCGTGT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (23 bp):
CATTCATTATTTTCCACAAAGGT
Found at i:26919164 original size:21 final size:21
Alignment explanation
Indices: 26919134--26919181 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
26919124 CCAATGCAAA
*
26919134 CTACTTGGATTACTTTTGTAC
1 CTACTCGGATTACTTTTGTAC
26919155 CTACTCGGATTACTTTTGTAC
1 CTACTCGGATTACTTTTGTAC
26919176 CTACTC
1 CTACTC
26919182 AATTTTCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (21 bp):
CTACTCGGATTACTTTTGTAC
Found at i:26921252 original size:2 final size:2
Alignment explanation
Indices: 26921247--26921271 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26921237 ACAAAATGTT
26921247 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26921272 GCATAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26921560 original size:25 final size:27
Alignment explanation
Indices: 26921511--26921561 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26921501 ATCCCTAACT
26921511 TAATTTTGCCCACTGATTTATTTTAAA
1 TAATTTTGCCCACTGATTTATTTTAAA
26921538 TAATTTTGACCC-CT-A-TTATTTTAA
1 TAATTTTG-CCCACTGATTTATTTTAA
26921562 TGTTCATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 9 0.39
26 1 0.04
27 10 0.43
28 3 0.13
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.49
Consensus pattern (27 bp):
TAATTTTGCCCACTGATTTATTTTAAA
Found at i:26921637 original size:38 final size:35
Alignment explanation
Indices: 26921591--26921672 Score: 94
Period size: 38 Copynumber: 2.3 Consensus size: 35
26921581 CTTACATATA
* *
26921591 TTTATTTATTTAGTTTCCATGATCT-TAATTACTTATT
1 TTTATTTATTTAATTTCCATAAT-TATAATTA-TTA-T
*
26921628 TATTATTTATTTAATTTGCATAATTATAATTATTAT
1 T-TTATTTATTTAATTTCCATAATTATAATTATTAT
26921664 TTTATTTAT
1 TTTATTTAT
26921673 ATTTTATTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
35 8 0.20
36 2 0.05
37 5 0.12
38 25 0.62
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (35 bp):
TTTATTTATTTAATTTCCATAATTATAATTATTAT
Found at i:26921701 original size:18 final size:17
Alignment explanation
Indices: 26921660--26921702 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
26921650 ATTATAATTA
*
26921660 TTATT-TTATTTATATT
1 TTATTATTACTTATATT
26921676 TTATTTATTACTTATATTT
1 TTA-TTATTACTTATA-TT
26921695 TTATTATT
1 TTATTATT
26921703 TACATATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 3 0.13
17 2 0.09
18 13 0.57
19 5 0.22
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (17 bp):
TTATTATTACTTATATT
Found at i:26921705 original size:19 final size:18
Alignment explanation
Indices: 26921657--26921705 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
26921647 ATAATTATAA
*
26921657 TTATTATTTTATTTATATT
1 TTATTA-TTTACTTATATT
26921676 TTATT-TATTACTTATATTT
1 TTATTAT-TTACTTATA-TT
26921695 TTATTATTTAC
1 TTATTATTTAC
26921706 ATATTTGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 1 0.04
18 8 0.31
19 16 0.62
20 1 0.04
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (18 bp):
TTATTATTTACTTATATT
Found at i:26923381 original size:59 final size:57
Alignment explanation
Indices: 26923317--26923482 Score: 162
Period size: 58 Copynumber: 2.8 Consensus size: 57
26923307 ATGACTCTCG
*
26923317 AGGGGTAAAAATGTAATTTTGGGAAAATTTGAGGTTAAAAATGGGATTTTAGA-AGGTTC
1 AGGGGT-AAAATGTAATTTTGGGAAAA-TCGAGGTTAAAAATGGGATTTTAGAGA-GTTC
* * *
26923376 AGGGGTAAAATGGTAATTTTTAGTAAAATCGAGGTT-AAAACGAGG-TTTTAGAGAGTTC
1 AGGGGTAAAAT-GTAA-TTTTGGGAAAATCGAGGTTAAAAATG-GGATTTTAGAGAGTTC
* *
26923434 -GAGGGTAAAACGATAATTTTGGTG-AAATCGAGGTCAAAAATGGGATTTT
1 AG-GGGTAAAATG-TAATTTTGG-GAAAATCGAGGTTAAAAATGGGATTTT
26923483 GAAAAGTTTG
Statistics
Matches: 89, Mismatches: 9, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
57 19 0.21
58 41 0.46
59 20 0.22
60 9 0.10
ACGTcount: A:0.37, C:0.04, G:0.28, T:0.31
Consensus pattern (57 bp):
AGGGGTAAAATGTAATTTTGGGAAAATCGAGGTTAAAAATGGGATTTTAGAGAGTTC
Found at i:26923440 original size:58 final size:58
Alignment explanation
Indices: 26923314--26923507 Score: 148
Period size: 58 Copynumber: 3.3 Consensus size: 58
26923304 ATTATGACTC
* * * * * *
26923314 TCGAGGGGTAAAAAT-GTAATTTTGGGAAAATTTGAGGTTAAAAATGGGATTTT-AGAAGGT
1 TCGA-GGGT-AAAATGGTAATTTTAGTAAAA-TCGAGGTCAAAAACGGGATTTTGA-AAAGT
* *
26923374 TC-AGGGGTAAAATGGTAATTTTTAGTAAAATCGAGGT-TAAAACGAGG-TTTT-AGAGAGT
1 TCGA-GGGTAAAATGGTAA-TTTTAGTAAAATCGAGGTCAAAAACG-GGATTTTGA-AAAGT
* * * * *
26923432 TCGAGGGTAAAACGATAATTTTGGTGAAATCGAGGTCAAAAATGGGATTTTGAAAAGT
1 TCGAGGGTAAAATGGTAATTTTAGTAAAATCGAGGTCAAAAACGGGATTTTGAAAAGT
*
26923490 TTGAGGGTAAAATGGTAA
1 TCGAGGGTAAAATGGTAA
26923508 ATCTTGAAAT
Statistics
Matches: 110, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
57 18 0.16
58 61 0.55
59 20 0.18
60 11 0.10
ACGTcount: A:0.37, C:0.04, G:0.29, T:0.30
Consensus pattern (58 bp):
TCGAGGGTAAAATGGTAATTTTAGTAAAATCGAGGTCAAAAACGGGATTTTGAAAAGT
Found at i:26925725 original size:58 final size:58
Alignment explanation
Indices: 26925656--26926069 Score: 383
Period size: 58 Copynumber: 7.2 Consensus size: 58
26925646 TTGATTCTCG
*
26925656 AGGGGTAAAAAT-GTAATTTTGG-GAAATTTTGAGGTTAAAAATGGGATTTTAG-AAGATTC
1 AGGGGT-AAAATGGTAATTTTGGTGAAA--TCGAGGTTAAAAATGGGATTTTAGAAAG-TTC
* * * * *
26925715 AGGGGTAAAATGGTAATTTATAGTAAAATCAAGGTT-AAAATGAGATTTTAGAGAGTTC
1 AGGGGTAAAATGGTAATTT-TGGTGAAATCGAGGTTAAAAATGGGATTTTAGAAAGTTC
* * * *
26925773 AAGGGTAAAACGGTAATTTTGGTGAAATCG-GG-TCAAAATGGGATTTTAGAAAGTTT
1 AGGGGTAAAATGGTAATTTTGGTGAAATCGAGGTTAAAAATGGGATTTTAGAAAGTTC
* *
26925829 GGGGGT-AAATGGTAA-TTTGGTGAAATC-ACGGTTAAAAAAATGGGA-TTTGGAAAGTTC
1 AGGGGTAAAATGGTAATTTTGGTGAAATCGA-GGTT--AAAAATGGGATTTTAGAAAGTTC
* * * *
26925886 -GAGGGTAAAATGGTAATTTTTGGTAAAATC-AGGGTTAAAATTAGGATTTTGGAAAGTT-
1 AG-GGGTAAAATGGTAA-TTTTGGTGAAATCGA-GGTTAAAAATGGGATTTTAGAAAGTTC
* * * *
26925944 TGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAAAGGGATTTTA-AAAATTT
1 AGGGGTAAAATGGTAA-TTTTGGTGAAATCGAGGTTAAAAATGGGATTTTAGAAAGTTC
* * *
26926002 A-GGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTC
1 AGGGGTAAAATGGTAA-TTTTGGTGAAATCGAGGTTAAAAATGGGATTTTAGAAAGTTC
26926060 -GGGGTCAAAA
1 AGGGGT-AAAA
26926070 CATAATTTCT
Statistics
Matches: 297, Mismatches: 37, Indels: 42
0.79 0.10 0.11
Matches are distributed among these distances:
54 12 0.04
55 11 0.04
56 27 0.09
57 72 0.24
58 116 0.39
59 38 0.13
60 18 0.06
61 3 0.01
ACGTcount: A:0.37, C:0.03, G:0.28, T:0.32
Consensus pattern (58 bp):
AGGGGTAAAATGGTAATTTTGGTGAAATCGAGGTTAAAAATGGGATTTTAGAAAGTTC
Found at i:26925908 original size:30 final size:30
Alignment explanation
Indices: 26925874--26925966 Score: 90
Period size: 29 Copynumber: 3.2 Consensus size: 30
26925864 AAAAATGGGA
26925874 TTTGGAAAGTTCGAGGGTAAAATGGTAATT
1 TTTGGAAAGTTCGAGGGTAAAATGGTAATT
*
26925904 TTTGGTAAA-ATC-AGGGTTAAAAT--TAGGA-T
1 TTTGG-AAAGTTCGAGGG-TAAAATGGTA--ATT
*
26925933 TTTGGAAAGTTTG-GGGTAAAATGGTAATT
1 TTTGGAAAGTTCGAGGGTAAAATGGTAATT
26925962 TTTGG
1 TTTGG
26925967 TGAAATCGAG
Statistics
Matches: 51, Mismatches: 3, Indels: 19
0.70 0.04 0.26
Matches are distributed among these distances:
28 12 0.24
29 20 0.39
30 16 0.31
31 3 0.06
ACGTcount: A:0.32, C:0.02, G:0.29, T:0.37
Consensus pattern (30 bp):
TTTGGAAAGTTCGAGGGTAAAATGGTAATT
Found at i:26926036 original size:115 final size:112
Alignment explanation
Indices: 26925716--26926069 Score: 387
Period size: 115 Copynumber: 3.1 Consensus size: 112
26925706 AGAAGATTCA
* * * * * *
26925716 GGGGTAAAATGGTAATTTATAGTAAAATCAAGGTT-AAAATGAGATTTTAGAGAGTTCAAGGGTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATC-AGGTTAAAAAAGGGATTTTA-AAAGTTCAAGGGTA
* * *
26925780 AAACGGTAA-TTTTGGTGAAATCGGGTCAAAATGGGATTTTAGAAAGTTT
64 AAATGGTAATTTTTGGTGAAATCGGGTTAAAAT-GGATTTTGGAAAGTTT
** *
26925829 GGGGGT-AAATGGTAA--TTTGGTGAAATCACGGTTAAAAAAATGGGATTTGGAAAGTTCGAGGG
1 -GGGGTAAAATGGTAATTTTTGGTGAAATCA-GGTT-AAAAAA-GGGATTTTAAAAGTTCAAGGG
*
26925891 TAAAATGGTAATTTTTGGTAAAATCAGGGTTAAAATTAGGATTTTGGAAAGTTT
62 TAAAATGGTAATTTTTGGTGAAATC-GGGTTAAAA-T-GGATTTTGGAAAGTTT
* *
26925945 GGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAAAGGGATTTTAAAAATT-TAGGGTAA
1 GGGGTAAAATGGTAATTTTTGGTGAAATC-AGGTTAAAAAAGGGATTTTAAAAGTTCAAGGGTAA
*
26926009 AATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTC
65 AATGGTAATTTTTGGTGAAATC-GGGTT-AAAATGG-ATTTTGGAAAGTTT
26926060 GGGGTCAAAA
1 GGGGT-AAAA
26926070 CATAATTTCT
Statistics
Matches: 205, Mismatches: 21, Indels: 26
0.81 0.08 0.10
Matches are distributed among these distances:
110 1 0.00
111 13 0.06
113 33 0.16
114 25 0.12
115 65 0.32
116 45 0.22
117 6 0.03
118 16 0.08
119 1 0.00
ACGTcount: A:0.37, C:0.04, G:0.28, T:0.31
Consensus pattern (112 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATCAGGTTAAAAAAGGGATTTTAAAAGTTCAAGGGTAAA
ATGGTAATTTTTGGTGAAATCGGGTTAAAATGGATTTTGGAAAGTTT
Found at i:26927103 original size:3 final size:3
Alignment explanation
Indices: 26927095--26927152 Score: 64
Period size: 3 Copynumber: 19.0 Consensus size: 3
26927085 TTTCTATTTT
** *
26927095 TTA TTA TTA CTTA TTA AAA ATA -TA TTTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
26927141 TTA TTA TTA TTA
1 TTA TTA TTA TTA
26927153 ACAAAGTTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
2 2 0.04
3 41 0.84
4 6 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:26927167 original size:3 final size:3
Alignment explanation
Indices: 26927120--26927152 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
26927110 AAAAATATAT
26927120 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26927153 ACAAAGTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26927870 original size:6 final size:6
Alignment explanation
Indices: 26927859--26927918 Score: 61
Period size: 6 Copynumber: 10.0 Consensus size: 6
26927849 AGTTTAACAT
* * *
26927859 TTTAAA TTTAAA -GTAAA TTTAAA TATGAAAA TTTAAA TTTAAA -ATAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA T-T-TAAA TTTAAA TTTAAA TTTAAA
26927907 TTTAAA TTTAAA
1 TTTAAA TTTAAA
26927919 ATAAACTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
5 8 0.18
6 30 0.68
7 2 0.05
8 4 0.09
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (6 bp):
TTTAAA
Found at i:26927881 original size:17 final size:17
Alignment explanation
Indices: 26927859--26927929 Score: 85
Period size: 17 Copynumber: 4.4 Consensus size: 17
26927849 AGTTTAACAT
*
26927859 TTTAAATTTAAAGTAAA
1 TTTAAATTTAAAATAAA
**
26927876 TTTAAA--TATGA-AAA
1 TTTAAATTTAAAATAAA
26927890 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
26927907 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
*
26927924 CTTAAA
1 TTTAAA
26927930 ATCCATTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
14 9 0.20
15 2 0.04
16 3 0.07
17 31 0.69
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.39
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:26927908 original size:11 final size:12
Alignment explanation
Indices: 26927861--26927929 Score: 54
Period size: 11 Copynumber: 5.8 Consensus size: 12
26927851 TTTAACATTT
*
26927861 TAAATTTAAA-G
1 TAAATTTAAATA
26927872 TAAATTTAAATA
1 TAAATTTAAATA
*
26927884 TGAAAATTTAAATT
1 T--AAATTTAAATA
* *
26927898 TAAA-ATAAATT
1 TAAATTTAAATA
26927909 TAAATTTAAA-A
1 TAAATTTAAATA
*
26927920 TAAACTTAAA
1 TAAATTTAAA
26927930 ATCCATTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
11 29 0.60
12 8 0.17
14 11 0.23
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:26931347 original size:9 final size:9
Alignment explanation
Indices: 26931335--26931360 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26931325 GGTTTAAAAA
26931335 ATTTAATTT
1 ATTTAATTT
26931344 ATTTAATTT
1 ATTTAATTT
26931353 ATTTAATT
1 ATTTAATT
26931361 AAAGATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
ATTTAATTT
Found at i:26938924 original size:30 final size:29
Alignment explanation
Indices: 26938864--26938931 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
26938854 GGTTTATATC
*
26938864 TTTATAATTTTTAAAGAGTTAAATTAAATT
1 TTTATCATTTTTAAAGAGTTAAATTAAA-T
*
26938894 TTTATCATTTTTAAAG-GTT-AATGTGTAAT
1 TTTATCATTTTTAAAGAGTTAAAT-T-AAAT
26938923 TTTATCATT
1 TTTATCATT
26938932 ACTAATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 3 0.09
29 14 0.41
30 17 0.50
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (29 bp):
TTTATCATTTTTAAAGAGTTAAATTAAAT
Found at i:26940193 original size:17 final size:17
Alignment explanation
Indices: 26940171--26940204 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26940161 GATTCTTTTA
26940171 TTATATT-TTATATAATT
1 TTATATTGTT-TATAATT
26940188 TTATATTGTTTATAATT
1 TTATATTGTTTATAATT
26940205 CTTAATTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
TTATATTGTTTATAATT
Found at i:26940211 original size:24 final size:22
Alignment explanation
Indices: 26940183--26940267 Score: 64
Period size: 22 Copynumber: 3.6 Consensus size: 22
26940173 ATATTTTATA
26940183 TAATTTTATATTGTTTATAATTCT
1 TAATTTTAT-TT-TTTATAATTCT
*
26940207 TAATTTCATTTTTTTTGAATAATT-T
1 TAATTT--TATTTTTT--ATAATTCT
* * *
26940232 TTATATTGTTTTTTATAATTCT
1 TAATTTTATTTTTTATAATTCT
*
26940254 TAATTTAATTTTTT
1 TAATTTTATTTTTT
26940268 GTGATTTTAA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
21 6 0.12
22 11 0.23
23 7 0.15
24 9 0.19
25 7 0.15
26 8 0.17
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.66
Consensus pattern (22 bp):
TAATTTTATTTTTTATAATTCT
Found at i:26940230 original size:26 final size:23
Alignment explanation
Indices: 26940187--26940267 Score: 69
Period size: 23 Copynumber: 3.5 Consensus size: 23
26940177 TTTATATAAT
* *
26940187 TTTATATTGTTTATAATTCTTAA
1 TTTATTTTTTTTATAATTCTTAA
26940210 TTTCATTTTTTTTGAATAATT-TT--
1 TTT-ATTTTTTTT--ATAATTCTTAA
*
26940233 TATATTGTTTTTTATAATTCTTAA
1 TTTATT-TTTTTTATAATTCTTAA
*
26940257 TTTAATTTTTT
1 TTTATTTTTTT
26940268 GTGATTTTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
21 6 0.13
22 5 0.11
23 16 0.35
24 11 0.24
25 2 0.04
26 6 0.13
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTATTTTTTTTATAATTCTTAA
Found at i:26940237 original size:44 final size:44
Alignment explanation
Indices: 26940182--26940267 Score: 129
Period size: 47 Copynumber: 1.9 Consensus size: 44
26940172 TATATTTTAT
*
26940182 ATAATTTTATATTG-TTTATAATTCTTAATTTCATTTTTTTTGA
1 ATAATTTTATATTGTTTTATAATTCTTAATTTAATTTTTTTTGA
26940225 ATAATTTTTATATTGTTTTTTATAATTCTTAATTTAATTTTTT
1 ATAA-TTTTATATTG--TTTTATAATTCTTAATTTAATTTTTT
26940268 GTGATTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
43 4 0.11
44 10 0.26
47 24 0.63
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.65
Consensus pattern (44 bp):
ATAATTTTATATTGTTTTATAATTCTTAATTTAATTTTTTTTGA
Found at i:26941121 original size:3 final size:3
Alignment explanation
Indices: 26941113--26941149 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
26941103 GAATGATAAT
26941113 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26941150 GTGATAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26943673 original size:22 final size:22
Alignment explanation
Indices: 26943624--26943673 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
26943614 TTTTATAAAG
* * *
26943624 AAAAACTTGGGTTTTTATAGGA
1 AAAAATTTGGATTTTTACAGGA
*
26943646 AAAAATTTGGATTTTTACATGA
1 AAAAATTTGGATTTTTACAGGA
26943668 AAAAAT
1 AAAAAT
26943674 CATTTTATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (22 bp):
AAAAATTTGGATTTTTACAGGA
Found at i:26947167 original size:17 final size:18
Alignment explanation
Indices: 26947147--26947182 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
26947137 CTTGTTAACA
26947147 TATTATCAA-ATATAATT
1 TATTATCAATATATAATT
*
26947164 TATTATCAATGTATAATT
1 TATTATCAATATATAATT
26947182 T
1 T
26947183 TATAGGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.50
Consensus pattern (18 bp):
TATTATCAATATATAATT
Found at i:26952766 original size:13 final size:13
Alignment explanation
Indices: 26952743--26952776 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
26952733 ATTTAAATTT
26952743 TAATATTTGTAATA
1 TAAT-TTTGTAATA
26952757 TAATTTTGTAATA
1 TAATTTTGTAATA
26952770 TAATTTT
1 TAATTTT
26952777 TTTTATCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
TAATTTTGTAATA
Found at i:26957735 original size:27 final size:27
Alignment explanation
Indices: 26957696--26957755 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
26957686 GAGGAGCTCT
*
26957696 ACCGTAACCCCCAGCCTAGAAGATATG
1 ACCGGAACCCCCAGCCTAGAAGATATG
*
26957723 ACCGGAACTCCCAGCCTAGAAGATATG
1 ACCGGAACCCCCAGCCTAGAAGATATG
26957750 ACCGGA
1 ACCGGA
26957756 TCCAAAAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (27 bp):
ACCGGAACCCCCAGCCTAGAAGATATG
Found at i:26967585 original size:24 final size:24
Alignment explanation
Indices: 26967558--26967614 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
26967548 ATTCGTGAGA
*
26967558 ATAAACGTATAGTGGCTGGCGAGC
1 ATAAACGTATAGTGGCTGACGAGC
*
26967582 ATAAACATATAGTGGCTGACGAGC
1 ATAAACGTATAGTGGCTGACGAGC
26967606 ATAAACGTA
1 ATAAACGTA
26967615 CGTTCTCTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (24 bp):
ATAAACGTATAGTGGCTGACGAGC
Found at i:26973177 original size:30 final size:29
Alignment explanation
Indices: 26973096--26973229 Score: 108
Period size: 30 Copynumber: 4.5 Consensus size: 29
26973086 AAAAATGAAA
* * * *
26973096 TTTTGGAAAGTTTGAGCACCAAATTTAATT
1 TTTTGGAAAGTTTG-GGATCAAATTCAAAT
**
26973126 TTTTGGAAAGCTCAGGGATCAAATTCAAAT
1 TTTTGGAAAG-TTTGGGATCAAATTCAAAT
* ** *
26973156 TTTTGGAAAGTTTAGGAATCAAAAACAAAA
1 TTTTGGAAAGTTT-GGGATCAAATTCAAAT
* *
26973186 TTTTGGAAAGTTTGGTGGTCAAATTTAAAT
1 TTTTGGAAAGTTTGG-GATCAAATTCAAAT
26973216 TTTT-GAAAGGTTTG
1 TTTTGGAAA-GTTTG
26973230 AGGGTAAAAA
Statistics
Matches: 82, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
29 7 0.09
30 73 0.89
31 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (29 bp):
TTTTGGAAAGTTTGGGATCAAATTCAAAT
Found at i:26975014 original size:42 final size:42
Alignment explanation
Indices: 26974954--26975074 Score: 131
Period size: 42 Copynumber: 2.9 Consensus size: 42
26974944 AAGATGGTAG
* *
26974954 CTTCAATCTGTCC-CATGATCGTGGTAAAAGATTGGATAAG-AT
1 CTTCAACCTG-CCACATGATCGGGGTAAAAGATTGGAT-AGTAT
* *
26974996 TTTCAACCTGCCACATGATCGGGGTAAGAA-ATTGGATGGTAT
1 CTTCAACCTGCCACATGATCGGGGTAA-AAGATTGGATAGTAT
* * *
26975038 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
1 CTTCAACCTGCCACATGATCGGGGTAAAAGATTGGAT
26975075 GTCTTCATCC
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
41 4 0.06
42 61 0.91
43 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
CTTCAACCTGCCACATGATCGGGGTAAAAGATTGGATAGTAT
Found at i:26975096 original size:39 final size:41
Alignment explanation
Indices: 26974954--26975477 Score: 169
Period size: 38 Copynumber: 12.9 Consensus size: 41
26974944 AAGATGGTAG
* * *
26974954 CTTCAATCTGTCCCATGATCGTGGTAA-AAGATTGGATAAGAT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAA-ATTGGAT-GGAT
* * *
26974996 TTTCAACCTGCCACATGATCGGGGTAAGAAATTGGATGGTAT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGATGG-AT
*
26975038 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT-G-T
1 CTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGATGGAT
* ** * *
26975077 CTTC-ATCCTGTCCTGTGATCGGGGTAA-ACGA-TCGATGTG-T
1 CTTCAAT-CTGCCCCATGATCGGGGTAAGA-AATTGGATG-GAT
* * **
26975117 CTTCAATCTTCCCTC-TAATTAGGGTAA-AAGATTGGAT-G--
1 CTTCAATCTGCCC-CATGATCGGGGTAAGAA-ATTGGATGGAT
* * * * **
26975155 CTTCAATTTTCCCTATGATCGGGGTAAGAGATCAG-TGTG-T
1 CTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGATG-GAT
** *
26975195 CTTCAATCTGCCCTC-TGATTAGGGTAA-AAGATTAGAT-G--
1 CTTCAATCTGCCC-CATGATCGGGGTAAGAA-ATTGGATGGAT
* * * *
26975233 CTTCAATTTGCCCTATGATAGGGGTAAGAGATTGGTAT-G-T
1 CTTCAATCTGCCCCATGATCGGGGTAAGAAATTGG-ATGGAT
* ** *
26975273 CTTCAATCTTCCCTC-TGATTAGGGTAA-ATGATTGGAT-G--
1 CTTCAATCTGCCC-CATGATCGGGGTAAGA-AATTGGATGGAT
* * *
26975311 CTTTAATCTGCCCCATTATCGGGGTAAGAGATTAGGGTAAAAGATTGGAT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAAATT---G-----GA-TGGAT
* * *
26975361 GCTTCAATCTACCCCATGATCAGGGTAAGAGATTGG-TGTG-T
1 -CTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGATG-GAT
** *
26975402 CTTCAATCTGCCCTC-TGATTAGGGTAA-AAGATTGAAT-G-T
1 CTTCAATCTGCCC-CATGATCGGGGTAAGAA-ATTGGATGGAT
* * *
26975441 -TTCAATTTGCCCCATGATCGGGGTATGAGATTGGATG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGATG
26975478 CTAGCTTCGC
Statistics
Matches: 369, Mismatches: 67, Indels: 95
0.69 0.13 0.18
Matches are distributed among these distances:
37 3 0.01
38 107 0.29
39 42 0.11
40 100 0.27
41 15 0.04
42 65 0.18
43 3 0.01
46 2 0.01
47 1 0.00
48 2 0.01
51 29 0.08
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
CTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGATGGAT
Found at i:26975142 original size:40 final size:39
Alignment explanation
Indices: 26975098--26975300 Score: 145
Period size: 40 Copynumber: 5.2 Consensus size: 39
26975088 CCTGTGATCG
*
26975098 GGGTAAACGATCGATGTGTCTTCAATCTTCCCTCTAATTA
1 GGGTAAA-GATCGATGTGTCTTCAATCTTCCCTCTGATTA
* * * **
26975138 GGGTAAAAGATTG--GATG-CTTCAATTTTCCCTATGATCG
1 GGGT-AAAGATCGATG-TGTCTTCAATCTTCCCTCTGATTA
*
26975176 GGGTAAGAGATC-AGTGTGTCTTCAATCTGCCCTCTGATTA
1 GGGTAA-AGATCGA-TGTGTCTTCAATCTTCCCTCTGATTA
* *
26975216 GGGTAAAAGAT-TA-GATG-CTTCAAT-TTGCCCTATGA-TA
1 GGGT-AAAGATCGATG-TGTCTTCAATCTT-CCCTCTGATTA
* * *
26975253 GGGGTAAGAGATTGGTATGTCTTCAATCTTCCCTCTGATTA
1 -GGGTAA-AGATCGATGTGTCTTCAATCTTCCCTCTGATTA
26975294 GGGTAAA
1 GGGTAAA
26975301 TGATTGGATG
Statistics
Matches: 127, Mismatches: 18, Indels: 37
0.70 0.10 0.20
Matches are distributed among these distances:
37 7 0.06
38 48 0.38
39 9 0.07
40 54 0.43
41 9 0.07
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (39 bp):
GGGTAAAGATCGATGTGTCTTCAATCTTCCCTCTGATTA
Found at i:26975161 original size:38 final size:38
Alignment explanation
Indices: 26975117--26975319 Score: 205
Period size: 38 Copynumber: 5.2 Consensus size: 38
26975107 ATCGATGTGT
*
26975117 CTTCAATCTTCCCTCTAATTAGGGTAAAAGATTGGATG
1 CTTCAATCTTCCCTCTGATTAGGGTAAAAGATTGGATG
* * ** * *
26975155 CTTCAATTTTCCCTATGATCGGGGTAAGAGATCAGTG-TG
1 CTTCAATCTTCCCTCTGATTAGGGTAAAAGAT-TG-GATG
* *
26975194 TCTTCAATCTGCCCTCTGATTAGGGTAAAAGATTAGATG
1 -CTTCAATCTTCCCTCTGATTAGGGTAAAAGATTGGATG
* *
26975233 CTTCAAT-TTGCCCTATGA-TAGGGGTAAGAGATTGGTATG
1 CTTCAATCTT-CCCTCTGATTA-GGGTAAAAGATTGG-ATG
*
26975272 TCTTCAATCTTCCCTCTGATTAGGGTAAATGATTGGATG
1 -CTTCAATCTTCCCTCTGATTAGGGTAAAAGATTGGATG
*
26975311 CTTTAATCT
1 CTTCAATCT
26975320 GCCCCATTAT
Statistics
Matches: 132, Mismatches: 23, Indels: 20
0.75 0.13 0.11
Matches are distributed among these distances:
37 3 0.02
38 61 0.46
39 11 0.08
40 53 0.40
41 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (38 bp):
CTTCAATCTTCCCTCTGATTAGGGTAAAAGATTGGATG
Found at i:26975198 original size:78 final size:77
Alignment explanation
Indices: 26975010--26975342 Score: 357
Period size: 78 Copynumber: 4.2 Consensus size: 77
26975000 AACCTGCCAC
* * * * ** *
26975010 ATGATCGGGGTAAGAAATTGGATGGTATCTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGA
1 ATGATCGGGGTAAGAGA-TCG-T-GTGTCTTCAATCTTCCCTC-TGATTAGGGTAAAAGATTGGA
* *
26975074 TGTCTTC-ATCCTGTCCT
62 TG-CTTCAAT-TTGCCCT
* *
26975091 GTGATCGGGGTAA-ACGATCGATGTGTCTTCAATCTTCCCTCTAATTAGGGTAAAAGATTGGATG
1 ATGATCGGGGTAAGA-GATCG-TGTGTCTTCAATCTTCCCTCTGATTAGGGTAAAAGATTGGATG
*
26975155 CTTCAATTTTCCCT
64 CTTCAATTTGCCCT
* *
26975169 ATGATCGGGGTAAGAGATCAGTGTGTCTTCAATCTGCCCTCTGATTAGGGTAAAAGATTAGATGC
1 ATGATCGGGGTAAGAGATC-GTGTGTCTTCAATCTTCCCTCTGATTAGGGTAAAAGATTGGATGC
26975234 TTCAATTTGCCCT
65 TTCAATTTGCCCT
* * * *
26975247 ATGATAGGGGTAAGAGATTGGTATGTCTTCAATCTTCCCTCTGATTAGGGTAAATGATTGGATGC
1 ATGATCGGGGTAAGAGA-TCGTGTGTCTTCAATCTTCCCTCTGATTAGGGTAAAAGATTGGATGC
* * *
26975312 TTTAATCTGCCCC
65 TTCAATTTGCCCT
*
26975325 ATTATCGGGGTAAGAGAT
1 ATGATCGGGGTAAGAGAT
26975343 TAGGGTAAAA
Statistics
Matches: 218, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
77 1 0.00
78 159 0.73
79 39 0.18
80 6 0.03
81 13 0.06
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (77 bp):
ATGATCGGGGTAAGAGATCGTGTGTCTTCAATCTTCCCTCTGATTAGGGTAAAAGATTGGATGCT
TCAATTTGCCCT
Found at i:26975349 original size:51 final size:51
Alignment explanation
Indices: 26975289--26975394 Score: 167
Period size: 51 Copynumber: 2.1 Consensus size: 51
26975279 TCTTCCCTCT
* * * * *
26975289 GATTAGGGTAAATGATTGGATGCTTTAATCTGCCCCATTATCGGGGTAAGA
1 GATTAGGGTAAAAGATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGA
26975340 GATTAGGGTAAAAGATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGA
1 GATTAGGGTAAAAGATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGA
26975391 GATT
1 GATT
26975395 GGTGTGTCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (51 bp):
GATTAGGGTAAAAGATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGA
Found at i:26975452 original size:129 final size:129
Alignment explanation
Indices: 26975211--26975472 Score: 393
Period size: 129 Copynumber: 2.0 Consensus size: 129
26975201 TCTGCCCTCT
* * *
26975211 GATTAGGGTAAAAGATTAGATGCTTCAATTTGCCCTATGATAGGGGTAAGAGATTGGTATGTCTT
1 GATTAGGGTAAAAGATTAGATGCTTCAATCTACCCCATGATAGGGGTAAGAGATTGGTATGTCTT
* * * *
26975276 CAATCTTCCCTCTGATTAGGGTAAATGATTGGATGCTTTAATCTGCCCCATTATCGGGGTAAGA
66 CAATCTGCCCTCTGATTAGGGTAAAAGATTGAATGCTTTAATCTGCCCCATGATCGGGGTAAGA
* *
26975340 GATTAGGGTAAAAGATTGGATGCTTCAATCTACCCCATGATCA-GGGTAAGAGATTGGTGTGTCT
1 GATTAGGGTAAAAGATTAGATGCTTCAATCTACCCCATGAT-AGGGGTAAGAGATTGGTATGTCT
* *
26975404 TCAATCTGCCCTCTGATTAGGGTAAAAGATTGAATG-TTTCAATTTGCCCCATGATCGGGGTATG
65 TCAATCTGCCCTCTGATTAGGGTAAAAGATTGAATGCTTT-AATCTGCCCCATGATCGGGGTAAG
26975468 A
129 A
26975469 GATT
1 GATT
26975473 GGATGCTAGC
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
128 3 0.03
129 116 0.97
130 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (129 bp):
GATTAGGGTAAAAGATTAGATGCTTCAATCTACCCCATGATAGGGGTAAGAGATTGGTATGTCTT
CAATCTGCCCTCTGATTAGGGTAAAAGATTGAATGCTTTAATCTGCCCCATGATCGGGGTAAGA
Found at i:26975793 original size:49 final size:49
Alignment explanation
Indices: 26975746--26976367 Score: 423
Period size: 49 Copynumber: 12.7 Consensus size: 49
26975736 TCAGGGTATG
* * *
26975746 AGATTCGCCGTTGCGGCCTCAATCTTTCCCTTCACATCTCTAAGGTATA
1 AGATTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
* * ** * * * *
26975795 A-AGTTCGCCGTTACAACTTCAACCTTTCCCTCCATATCTCTATGGTACA
1 AGA-TTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
** * * * *
26975844 AGATTTTCCGTTGCGGCTTTAATCTTTCCCATCACATATCTAAGGTACA
1 AGATTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
* * * * * * *
26975893 AGGTTCACCATTGCGACTTCAA-CTTTTCCCTCCATATCTCCATGGTACA
1 AGATTCGCCATTGCGGCTTCAATC-TTTCCCTTCACATCTCTAAGGTACA
* * * * * * * *
26975942 AGATTTGCCATTGCAGCCTCAATATTTCCCATCGCGTCTCTAAGGCACA
1 AGATTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
* * * * * * * *
26975991 AGGTTCGTCATTGCGGCTTTAACCTTTTCCTCCATATCTCTATGGTACA
1 AGATTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
* ** * * *
26976040 AGATTCACCATTAG-AACTTCAATCTTTCTCATCACGTCTCTAAGGTACA
1 AGATTCGCCATT-GCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
* * * * * *
26976089 AGGTTCGCCATTGCGACTTCAACCTTTCCCTCCATATCTCTATGGTACA
1 AGATTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
* * * *
26976138 AGATTCGTCGTTGCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACA
1 AGATTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
* * * * * **
26976187 A-AGTTTGCCGTTGCGGCTTCAACCTTTCCC-TCTATATCTCTAGGGTATT
1 AGA-TTCGCCATTGCGGCTTCAATCTTTCCCTTC-ACATCTCTAAGGTACA
* * * *
26976236 AGAATT-GCCGTTGCGGCTTCAATCTTCCCCTTCACGTCTCTAATGTACA
1 AG-ATTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
* ** * * * * **
26976285 AGGTTTACCATTGCGGCTTCAACCTTTCCC-TCAATATCTTTAGGGTATT
1 AGATTCGCCATTGCGGCTTCAATCTTTCCCTTC-ACATCTCTAAGGTACA
*
26976334 AGATTTC-TCATTGCGGCTTCAATCTTTCCCTTCA
1 AGA-TTCGCCATTGCGGCTTCAATCTTTCCCTTCA
26976368 AACCTGTAGA
Statistics
Matches: 428, Mismatches: 130, Indels: 30
0.73 0.22 0.05
Matches are distributed among these distances:
48 10 0.02
49 407 0.95
50 10 0.02
51 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.35
Consensus pattern (49 bp):
AGATTCGCCATTGCGGCTTCAATCTTTCCCTTCACATCTCTAAGGTACA
Found at i:26975886 original size:98 final size:98
Alignment explanation
Indices: 26975753--26976363 Score: 688
Period size: 98 Copynumber: 6.2 Consensus size: 98
26975743 ATGAGATTCG
* * * * * * * *
26975753 CCGTTGCGGCCTCAATCTTTCCCTTCACATCTCTAAGGTATAAAGTTCGCCGTTACAACTTCAAC
1 CCGTTGCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAAC
26975818 CTTTCCCTCCATATCTCTATGGTACAAGATTTT
66 CTTTCCCTCCATATCTCTATGGTACAAGATTTT
* * * *
26975851 CCGTTGCGGCTTTAATCTTTCCCATCACATATCTAAGGTACAAGGTTCACCATTGCGACTTCAAC
1 CCGTTGCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAAC
* * *
26975916 TTTTCCCTCCATATCTCCATGGTACAAGATTTG
66 CTTTCCCTCCATATCTCTATGGTACAAGATTTT
* * * * * * * * *
26975949 CCATTGCAGCCTCAATATTTCCCATCGCGTCTCTAAGGCACAAGGTTCGTCATTGCGGCTTTAAC
1 CCGTTGCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAAC
* **
26976014 CTTTTCCTCCATATCTCTATGGTACAAGATTCA
66 CTTTCCCTCCATATCTCTATGGTACAAGATTTT
* ** *
26976047 CCATTAG-AACTTCAATCTTTCTCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAA
1 CCGTT-GCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAA
*
26976111 CCTTTCCCTCCATATCTCTATGGTACAAGATTCGT
65 CCTTTCCCTCCATATCTCTATGGTACAAGATT-TT
* * * *
26976146 -CGTTGCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAAGTTTGCCGTTGCGGCTTCAAC
1 CCGTTGCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAAC
* * ** * *
26976210 CTTTCCCTCTATATCTCTAGGGTATTAGAATTG
66 CTTTCCCTCCATATCTCTATGGTACAAGATTTT
* * * ** *
26976243 CCGTTGCGGCTTCAATCTTCCCCTTCACGTCTCTAATGTACAAGGTTTACCATTGCGGCTTCAAC
1 CCGTTGCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAAC
* * * **
26976308 CTTTCCCTCAATATCTTTAGGGTATTAGA-TTT
66 CTTTCCCTCCATATCTCTATGGTACAAGATTTT
*
26976340 CTCATTGCGGCTTCAATCTTTCCC
1 C-CGTTGCGGCTTCAATCTTTCCC
26976364 TTCAAACCTG
Statistics
Matches: 439, Mismatches: 69, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
97 4 0.01
98 434 0.99
99 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.35
Consensus pattern (98 bp):
CCGTTGCGGCTTCAATCTTTCCCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAAC
CTTTCCCTCCATATCTCTATGGTACAAGATTTT
Found at i:26976780 original size:112 final size:116
Alignment explanation
Indices: 26976577--26976792 Score: 314
Period size: 112 Copynumber: 1.9 Consensus size: 116
26976567 TATCGTTAGA
* *
26976577 TCACTAACCGTTATTTCAAATGAAAAATAATGCTTGAATCAAGGTTGTAAGGTGGATGAAATCGA
1 TCACTAACCGTTATTTCAAATGAAAAATAATGCTAGAATCAAGGTTGTAAGGTGGATAAAATCGA
* * *
26976642 GTCTTATTGGAGGTAAAGCTCGTATGAATGAAAAGATTATGAATCATTGGT
66 ATCTTATTGGAGGCAAAGCTCATATGAATGAAAAGATTATGAATCATTGGT
* * * *
26976693 TCACTAACCGTTATTTC-AATG-CAAA-AATGCTAGCA-CAATGTTGTAAGGTGGATAAAATTGA
1 TCACTAACCGTTATTTCAAATGAAAAATAATGCTAGAATCAAGGTTGTAAGGTGGATAAAATCGA
*
26976754 ATTTTATTGGAGGCAAAGCTCATATGAATGAAAAGATTA
66 ATCTTATTGGAGGCAAAGCTCATATGAATGAAAAGATTA
26976793 AAAATGACCC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
112 58 0.64
113 8 0.09
114 3 0.03
115 4 0.04
116 17 0.19
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.31
Consensus pattern (116 bp):
TCACTAACCGTTATTTCAAATGAAAAATAATGCTAGAATCAAGGTTGTAAGGTGGATAAAATCGA
ATCTTATTGGAGGCAAAGCTCATATGAATGAAAAGATTATGAATCATTGGT
Found at i:26977574 original size:20 final size:20
Alignment explanation
Indices: 26977538--26977575 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26977528 TATCCTGCAA
26977538 CTTTTACCGATACAATCATT
1 CTTTTACCGATACAATCATT
26977558 CTTTCTACCGATA-AATCA
1 CTTT-TACCGATACAATCA
26977576 ATACCATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (20 bp):
CTTTTACCGATACAATCATT
Found at i:26978288 original size:52 final size:52
Alignment explanation
Indices: 26978210--26978661 Score: 742
Period size: 52 Copynumber: 8.7 Consensus size: 52
26978200 ATTTCATTTC
* *
26978210 ATTCATATACTCATGATGACACATAGCCACCGGACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
*
26978262 ATTCATATACTCACGATGACACATAGCCATCGAACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
* * *
26978314 ATTCATATACTCACAATGACACATAACCATCGAACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
*
26978366 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCATAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
*
26978418 ATTCATATACTCACGATTACACATAGCCATCGGACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
*
26978470 ATTCATATACTCACGATTACACATAGCCATCGGACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
* *
26978522 ATTCATATACCCACGATTACACATAGCCATCGGACCTCATAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
* * *
26978574 ATTCATATACTCACGATGACACATAGTCACCGGACCTCATAATCCATAAAGG
1 ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
* * * *
26978626 ATTCATATACTCACTATGGCACTTAGTCATCGGACC
1 ATTCATATACTCACGATGACACATAGCCATCGGACC
26978662 CTTTTTCATT
Statistics
Matches: 379, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 379 1.00
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.24
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACATAGCCATCGGACCTCATAATCCGTAAAGG
Found at i:26982850 original size:16 final size:16
Alignment explanation
Indices: 26982820--26982849 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26982810 TATGTGAGAT
26982820 TTTTCTTTTTCTTTTC
1 TTTTCTTTTTCTTTTC
26982836 TTTTCTTTTT-TTTT
1 TTTTCTTTTTCTTTT
26982850 TGAAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTCTTTTTCTTTTC
Found at i:26985794 original size:104 final size:103
Alignment explanation
Indices: 26985648--26985852 Score: 277
Period size: 104 Copynumber: 2.0 Consensus size: 103
26985638 ATTAGTTCCA
* *
26985648 AATAGGATATTCAATTATTTAGGTTCAAAGAAAAATCATACCCAACACGATAGGGCACAATTCCT
1 AATAGGATATTCAATTAGTTAGGTTCAAAGAAAAATCATACCCAACACGATAGAGCACAATTCCT
*
26985713 CGACTTCCCTAAAATAAAAGAA-CATTGCCTCGATTTTTG
66 CGACTTCCCT-AAAT-AAAGAAGCATGGCCTCGATTTTTG
* * * * * * *
26985752 AATAGTATATTCAATTAGTTAGGTTCGAAGAAAAATCGTACCCAATACGTTTGAGCACAATTTCT
1 AATAGGATATTCAATTAGTTAGGTTCAAAGAAAAATCATACCCAACACGATAGAGCACAATTCCT
* *
26985817 CGAGTTCCCTAAATAAAGAAGTATGGCCTCGATTTT
66 CGACTTCCCTAAATAAAGAAGCATGGCCTCGATTTT
26985853 GAAAATATTT
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
102 6 0.07
103 17 0.19
104 65 0.74
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (103 bp):
AATAGGATATTCAATTAGTTAGGTTCAAAGAAAAATCATACCCAACACGATAGAGCACAATTCCT
CGACTTCCCTAAATAAAGAAGCATGGCCTCGATTTTTG
Found at i:26985904 original size:16 final size:16
Alignment explanation
Indices: 26985883--26985914 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26985873 AAGAAAATAT
26985883 AAATTTTTTTTGATTA
1 AAATTTTTTTTGATTA
*
26985899 AAATTTTTTTTTATTA
1 AAATTTTTTTTGATTA
26985915 TTTTTTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
AAATTTTTTTTGATTA
Found at i:26986240 original size:73 final size:73
Alignment explanation
Indices: 26986163--26986306 Score: 209
Period size: 73 Copynumber: 2.0 Consensus size: 73
26986153 AATGAAAATT
* * * *
26986163 TTAGGGTAAAAATATGAAAATAAG-GAAAAATGGACCAAAAATAAAATTTTGGAAAGTTTGAGGG
1 TTAGGGTAAAAATATGAAAATAAGAAAAAAAAGG-CCAAAAACAAAATTTTGGAAAATTTGAGGG
26986227 TAAAAAAAA
65 TAAAAAAAA
* *
26986236 TTAGGGTAAAAATATGAAAATAAGAAAAAAAAGGTCAAAAGCAAAATTTTGGAAAATTTGAGGGT
1 TTAGGGTAAAAATATGAAAATAAGAAAAAAAAGGCCAAAAACAAAATTTTGGAAAATTTGAGGGT
*
26986301 CAAAAA
66 AAAAAA
26986307 TAAAATTTTG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
73 56 0.89
74 7 0.11
ACGTcount: A:0.55, C:0.03, G:0.20, T:0.22
Consensus pattern (73 bp):
TTAGGGTAAAAATATGAAAATAAGAAAAAAAAGGCCAAAAACAAAATTTTGGAAAATTTGAGGGT
AAAAAAAA
Found at i:26986364 original size:29 final size:29
Alignment explanation
Indices: 26986268--26986412 Score: 166
Period size: 30 Copynumber: 4.9 Consensus size: 29
26986258 AGAAAAAAAA
** * *
26986268 GGTCAAAAGCAAAATTTTGGAAAATTTGAG
1 GGTCAAATTCAAATTTTTGGAAAGTTTG-G
* *
26986298 GGTCAAAAAT-AAAATTTTGGAAAGTTTGG
1 GGTC-AAATTCAAATTTTTGGAAAGTTTGG
* *
26986327 GGACTAAATTCAAATTTTTGGAAAGGTTGG
1 GGTC-AAATTCAAATTTTTGGAAAGTTTGG
26986357 GGTCAAATTCAAATTTTTGGAAAGTTTGG
1 GGTCAAATTCAAATTTTTGGAAAGTTTGG
*
26986386 TGGTTAAATTCAAATTTTTGGAAAGTT
1 -GGTCAAATTCAAATTTTTGGAAAGTT
26986413 CAGGGGTTAA
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
29 32 0.31
30 66 0.65
31 4 0.04
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (29 bp):
GGTCAAATTCAAATTTTTGGAAAGTTTGG
Found at i:26986410 original size:59 final size:60
Alignment explanation
Indices: 26986277--26986410 Score: 175
Period size: 59 Copynumber: 2.2 Consensus size: 60
26986267 AGGTCAAAAG
* **
26986277 CAAAATTTTGGAAAATTTGAGGGTCAAAAATAAAATTTTGGAAAGTTTGGGGACTAAATT
1 CAAATTTTTGGAAAGGTTGAGGGTCAAAAATAAAATTTTGGAAAGTTTGGGGACTAAATT
* * *
26986337 CAAATTTTTGGAAAGGTTG-GGGTC-AAATTCAAATTTTTGGAAAGTTTGGTGG-TTAAATT
1 CAAATTTTTGGAAAGGTTGAGGGTCAAAAAT-AAAATTTTGGAAAGTTTGG-GGACTAAATT
26986396 CAAATTTTTGGAAAG
1 CAAATTTTTGGAAAG
26986411 TTCAGGGGTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
58 4 0.06
59 44 0.67
60 18 0.27
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (60 bp):
CAAATTTTTGGAAAGGTTGAGGGTCAAAAATAAAATTTTGGAAAGTTTGGGGACTAAATT
Found at i:26988221 original size:89 final size:89
Alignment explanation
Indices: 26988117--26988322 Score: 369
Period size: 89 Copynumber: 2.3 Consensus size: 89
26988107 TTTTATTTCC
*
26988117 TTGAAATACTT-CTTCTTTTGAGTCGATTTTTTATATGCTTAAATCAATTGTCATGTTGGATATT
1 TTGAAATA-TTGCTTCTTTTGAATCGATTTTTTATATGCTTAAATCAATTGTCATGTTGGATATT
26988181 GCTTTTTTTTGAACCAATTTTTATG
65 GCTTTTTTTTGAACCAATTTTTATG
*
26988206 TTGAAATATTGCTTCTTTTGAATCGATTTTTTATATGTTTAAATCAATTGTCATGTTGGATATTG
1 TTGAAATATTGCTTCTTTTGAATCGATTTTTTATATGCTTAAATCAATTGTCATGTTGGATATTG
26988271 CTTTTTTTTGAACCAATTTTTATG
66 CTTTTTTTTGAACCAATTTTTATG
*
26988295 TTCAAATATTGCTTCTTTTGAATCGATT
1 TTGAAATATTGCTTCTTTTGAATCGATT
26988323 GTTACATAAC
Statistics
Matches: 113, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
88 2 0.02
89 111 0.98
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.52
Consensus pattern (89 bp):
TTGAAATATTGCTTCTTTTGAATCGATTTTTTATATGCTTAAATCAATTGTCATGTTGGATATTG
CTTTTTTTTGAACCAATTTTTATG
Found at i:26991612 original size:350 final size:350
Alignment explanation
Indices: 26990971--26991618 Score: 1192
Period size: 350 Copynumber: 1.9 Consensus size: 350
26990961 TGTAAAGCTT
26990971 ATTATATGGTTATGCAGTGACAATGAGTGGTCTCAAATTGCCTATGTTACCTTCAAGGATTCACA
1 ATTATATGGTTATGCAGTGACAATGAGTGGTCTCAAATTGCCTATGTTACCTTCAAGGATTCACA
* *
26991036 AGAAGCAAAGATTGGTATTTTTCTTTCGGTAATTCAACTTCATACTATTGATAAATATGCTATAG
66 AGAAGCAAAGATTGGTATTTTTCTTTCGATAATTCAACTTCATACTATTGATAAATACGCTATAG
26991101 TTCAACTTTTTCATCTCTTATGAAATTGAATAGGACAAGTTATTGATCAAATATATGCATCACAT
131 TTCAACTTTTTCATCTCTTATGAAATTGAATAGGACAAGTTATTGATCAAATATATGCATCACAT
*
26991166 TTTTATGTTACTTAATTCTCATTCTTCATTAGATTTTTAGATGAAAATATTGCAGGTTTTCTAAT
196 TTTTATGTTACTTAATTCTCATTCTTCATTAGATTTTTAGATGAAAATATTACAGGTTTTCTAAT
26991231 CTTGTTTCCAAAAATACACATAATTTGGCATTAGGGGTGAGCGTTCGATCAAATCGAATCGAATC
261 CTTGTTTCCAAAAATACACATAATTTGGCATTAGGGGTGAGCGTTCGATCAAATCGAATCGAATC
26991296 AAATGAAAAAATTTCGAGTTAATCG
326 AAATGAAAAAATTTCGAGTTAATCG
*
26991321 ATTATATGGTTATGCAGTGACAATGAGTGGTCTCAAATTGCCTATGTTACCTTCAAGGATTCATA
1 ATTATATGGTTATGCAGTGACAATGAGTGGTCTCAAATTGCCTATGTTACCTTCAAGGATTCACA
*
26991386 AGAAGCAGAG-TCTGGTATTTTTCTTTCGATAATTCAACTGT-ATACTATTGATAAATACGCTAT
66 AGAAGCAAAGAT-TGGTATTTTTCTTTCGATAATTCAACT-TCATACTATTGATAAATACGCTAT
* *
26991449 AGTTCAACTTTTTCATCTCTTCTGAAATTGAATAGGACAAGTTATTGATCAAATATATGCATCAT
129 AGTTCAACTTTTTCATCTCTTATGAAATTGAATAGGACAAGTTATTGATCAAATATATGCATCAC
26991514 ATTTTTATGTTACTTAATTCTCATTCTTCATTAGATTTTTAGATGAAAATATTACAGGTTTTCTA
194 ATTTTTATGTTACTTAATTCTCATTCTTCATTAGATTTTTAGATGAAAATATTACAGGTTTTCTA
*
26991579 ATCTTGTTTCCAAAAATACATATAATTTGGCATTAGGGGT
259 ATCTTGTTTCCAAAAATACACATAATTTGGCATTAGGGGT
26991619 CAAATCGAAC
Statistics
Matches: 288, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
349 1 0.00
350 286 0.99
351 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (350 bp):
ATTATATGGTTATGCAGTGACAATGAGTGGTCTCAAATTGCCTATGTTACCTTCAAGGATTCACA
AGAAGCAAAGATTGGTATTTTTCTTTCGATAATTCAACTTCATACTATTGATAAATACGCTATAG
TTCAACTTTTTCATCTCTTATGAAATTGAATAGGACAAGTTATTGATCAAATATATGCATCACAT
TTTTATGTTACTTAATTCTCATTCTTCATTAGATTTTTAGATGAAAATATTACAGGTTTTCTAAT
CTTGTTTCCAAAAATACACATAATTTGGCATTAGGGGTGAGCGTTCGATCAAATCGAATCGAATC
AAATGAAAAAATTTCGAGTTAATCG
Found at i:26991947 original size:17 final size:18
Alignment explanation
Indices: 26991912--26991946 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26991902 TGTTACTATG
26991912 TATATTGAAATTAAAAAA
1 TATATTGAAATTAAAAAA
26991930 TATATT-AAATGTAAAAA
1 TATATTGAAAT-TAAAAA
26991947 TGTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (18 bp):
TATATTGAAATTAAAAAA
Found at i:26993683 original size:30 final size:30
Alignment explanation
Indices: 26993644--26993759 Score: 135
Period size: 30 Copynumber: 3.9 Consensus size: 30
26993634 CCGGGTCAAT
26993644 TTTGAATTTTTAGAAAGTTCAAGGGTTAAA
1 TTTGAATTTTTAGAAAGTTCAAGGGTTAAA
* * *
26993674 TTAGAATTTTTTAGAAAGTT-TAGGGTCAAA
1 TTTGAA-TTTTTAGAAAGTTCAAGGGTTAAA
* * *
26993704 TTTGAATTTTTGGAAAGTTCGAGGGTTAAC
1 TTTGAATTTTTAGAAAGTTCAAGGGTTAAA
* * *
26993734 TTTGAATTTTTAAAAAATTTAAGGGT
1 TTTGAATTTTTAGAAAGTTCAAGGGT
26993760 AAAAACATAA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
29 12 0.17
30 46 0.65
31 13 0.18
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.41
Consensus pattern (30 bp):
TTTGAATTTTTAGAAAGTTCAAGGGTTAAA
Found at i:26993759 original size:60 final size:60
Alignment explanation
Indices: 26993636--26993759 Score: 169
Period size: 60 Copynumber: 2.1 Consensus size: 60
26993626 CATTAAAACC
* * *
26993636 GGGTCAATTTTGAATTTTTAGAAAGTTCAAGGGTTAAATTAGAATTTTTTAGAAAGTTTA
1 GGGTCAAATTTGAATTTTTAGAAAGTTCAAGGGTTAAATTAGAATTTTTTAAAAAATTTA
* * * *
26993696 GGGTCAAATTTGAATTTTTGGAAAGTTCGAGGGTTAACTTTGAA-TTTTTAAAAAATTTAA
1 GGGTCAAATTTGAATTTTTAGAAAGTTCAAGGGTTAAATTAGAATTTTTTAAAAAATTT-A
26993756 GGGT
1 GGGT
26993760 AAAAACATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 12 0.21
60 44 0.79
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (60 bp):
GGGTCAAATTTGAATTTTTAGAAAGTTCAAGGGTTAAATTAGAATTTTTTAAAAAATTTA
Found at i:26993772 original size:60 final size:60
Alignment explanation
Indices: 26993646--26993773 Score: 143
Period size: 60 Copynumber: 2.1 Consensus size: 60
26993636 GGGTCAATTT
* * * **
26993646 TGAATTTTTAGAAAGTTCAAGGGTTAAATTAGAATTTTTTAGAAAGTTTAGGGTCAAATT
1 TGAATTTTTAGAAAGTTCAAGGGTTAAATTAGAATTTTTTAAAAAATTTAGGGTAAAACA
* * * *
26993706 TGAATTTTTGGAAAGTTCGAGGGTTAACTTTGAA-TTTTTAAAAAATTTAAGGGTAAAAACA
1 TGAATTTTTAGAAAGTTCAAGGGTTAAATTAGAATTTTTTAAAAAATTT-AGGGT-AAAACA
26993767 T-AATTTT
1 TGAATTTT
26993774 AAAATAAAGC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
59 12 0.21
60 41 0.72
61 4 0.07
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.40
Consensus pattern (60 bp):
TGAATTTTTAGAAAGTTCAAGGGTTAAATTAGAATTTTTTAAAAAATTTAGGGTAAAACA
Found at i:26994916 original size:10 final size:10
Alignment explanation
Indices: 26994894--26994935 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
26994884 TTTGTTTACT
26994894 TTTATTATTTA
1 TTTA-TATTTA
*
26994905 TTTATTTTTA
1 TTTATATTTA
*
26994915 TTTGTATTTA
1 TTTATATTTA
26994925 TTTATATTTA
1 TTTATATTTA
26994935 T
1 T
26994936 AAATAGATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 23 0.85
11 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (10 bp):
TTTATATTTA
Found at i:26994922 original size:16 final size:16
Alignment explanation
Indices: 26994888--26994933 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
26994878 TGTGTATTTG
* *
26994888 TTTACTTTTATTATTTA
1 TTTATTTTTATT-TGTA
26994905 TTTATTTTTATTTGTA
1 TTTATTTTTATTTGTA
*
26994921 TTTATTTATATTT
1 TTTATTTTTATTT
26994934 ATAAATAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 15 0.58
17 11 0.42
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTATTTTTATTTGTA
Done.