Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 102 of 182
Found at i:33268745 original size:17 final size:17
Alignment explanation
Indices: 33268725--33268757 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33268715 TTTAAGGACT
33268725 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
33268742 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
33268758 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:33269000 original size:47 final size:49
Alignment explanation
Indices: 33268938--33269036 Score: 114
Period size: 50 Copynumber: 2.0 Consensus size: 49
33268928 CATGCATTAT
* *
33268938 ATAATGACAACCATTAACT-C-T-CATGATTAGTTAAGTTTGCATCATAA
1 ATAATGACAACCATTAACTACTTACATG-TTAGTTAAATATGCATCATAA
** *
33268985 ATAATGACATGCATTAAGTAACTTACATGTTAGTTAAATATGCATCATAA
1 ATAATGACAACCATTAACT-ACTTACATGTTAGTTAAATATGCATCATAA
33269035 AT
1 AT
33269037 CCTATCATGC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
47 16 0.37
49 1 0.02
50 22 0.51
51 4 0.09
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (49 bp):
ATAATGACAACCATTAACTACTTACATGTTAGTTAAATATGCATCATAA
Found at i:33269031 original size:50 final size:50
Alignment explanation
Indices: 33268952--33269107 Score: 154
Period size: 50 Copynumber: 3.1 Consensus size: 50
33268942 TGACAACCAT
* *
33268952 TAACTCTCATGATTAGTTAAGTTTGCATCATAAATAATGACATGCATTAAG
1 TAACTCACATG-TTAGTTAAATTTGCATCATAAATAATGACATGCATTAAG
* * ** *
33269003 TAACTTACATGTTAGTTAAATATGCATCATAAATCCT-ATCATGCATTATG
1 TAACTCACATGTTAGTTAAATTTGCATCATAAATAATGA-CATGCATTAAG
* * * *
33269053 TAACTCCCATGTTAGTTAAAGTTTGCATCCTTAAATCAA-GTCATGCATTTAG
1 TAACTCACATGTTAGTTAAA-TTTGCAT-CATAAAT-AATGACATGCATTAAG
33269105 TAA
1 TAA
33269108 TCCATTAGTT
Statistics
Matches: 84, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
49 1 0.01
50 50 0.60
51 15 0.18
52 18 0.21
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (50 bp):
TAACTCACATGTTAGTTAAATTTGCATCATAAATAATGACATGCATTAAG
Found at i:33270330 original size:19 final size:19
Alignment explanation
Indices: 33270278--33270321 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
33270268 TATTTTGTGT
33270278 TTCG-AAAAAGTAAAAAAAA
1 TTCGAAAAAAG-AAAAAAAA
33270297 TTCGAAAAAAGAAAAAAAA
1 TTCGAAAAAAGAAAAAAAA
33270316 -TCGAAA
1 TTCGAAA
33270322 TATTGAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.25
19 12 0.50
20 6 0.25
ACGTcount: A:0.68, C:0.07, G:0.11, T:0.14
Consensus pattern (19 bp):
TTCGAAAAAAGAAAAAAAA
Found at i:33271291 original size:26 final size:26
Alignment explanation
Indices: 33271262--33271323 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
33271252 TGGTGTGGTG
*
33271262 ACAATTAAAGATTTAAGTGAT-GGTCA
1 ACAATTAAAGAGTTAAGTGATAGG-CA
33271288 ACAATTAAAGAGTTAAGTGATAGGCA
1 ACAATTAAAGAGTTAAGTGATAGGCA
33271314 ACAATTAAAG
1 ACAATTAAAG
33271324 GTAAATAGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 32 0.94
27 2 0.06
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.26
Consensus pattern (26 bp):
ACAATTAAAGAGTTAAGTGATAGGCA
Found at i:33273237 original size:15 final size:15
Alignment explanation
Indices: 33273205--33273233 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33273195 GGAGAAGAAA
33273205 AAGAAGATGAAAGAG
1 AAGAAGATGAAAGAG
33273220 AAGAAGA-GAAAGAG
1 AAGAAGATGAAAGAG
33273234 GAAGTTCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.62, C:0.00, G:0.34, T:0.03
Consensus pattern (15 bp):
AAGAAGATGAAAGAG
Found at i:33280412 original size:15 final size:15
Alignment explanation
Indices: 33280349--33280413 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
33280339 TCCATGCTCA
*
33280349 CAACGTGAGTGTTCG
1 CAACATGAGTGTTCG
*
33280364 CAACATTAGTGTTCG
1 CAACATGAGTGTTCG
**** *
33280379 CGTTGTGTA-TGTCCG
1 CAACATG-AGTGTTCG
33280394 CAACATGAGTGTTCG
1 CAACATGAGTGTTCG
33280409 CAACA
1 CAACA
33280414 CTAGTACTCG
Statistics
Matches: 35, Mismatches: 13, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (15 bp):
CAACATGAGTGTTCG
Found at i:33282566 original size:39 final size:39
Alignment explanation
Indices: 33282448--33282546 Score: 189
Period size: 39 Copynumber: 2.5 Consensus size: 39
33282438 TTAAATAGGG
33282448 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
33282487 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
*
33282526 TTTTAATGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
33282547 GACAAATTAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.25, C:0.05, G:0.16, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:33282628 original size:32 final size:32
Alignment explanation
Indices: 33282592--33282685 Score: 152
Period size: 32 Copynumber: 2.9 Consensus size: 32
33282582 AGCCGAAATT
*
33282592 AATTAGCTTATTAATGTGTTTCAGGTACATGC
1 AATTAGCTAATTAATGTGTTTCAGGTACATGC
*
33282624 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTAATTAATGTGTTTCAGGTACATGC
* *
33282656 AATTAGCTAATTAATATATTTCAGGTACAT
1 AATTAGCTAATTAATGTGTTTCAGGTACAT
33282686 ATATGGATGG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (32 bp):
AATTAGCTAATTAATGTGTTTCAGGTACATGC
Found at i:33283719 original size:15 final size:15
Alignment explanation
Indices: 33283695--33283733 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
33283685 AGTAAGTTCT
*
33283695 TGAAATAAAAATTCG
1 TGAAAAAAAAATTCG
33283710 TG-AAAAAAAATTCG
1 TGAAAAAAAAATTCG
33283724 TGGAAAAAAA
1 T-GAAAAAAA
33283734 GAGAGGATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 12 0.57
15 3 0.14
16 6 0.29
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.21
Consensus pattern (15 bp):
TGAAAAAAAAATTCG
Found at i:33283720 original size:14 final size:14
Alignment explanation
Indices: 33283695--33283733 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 14
33283685 AGTAAGTTCT
33283695 TGAAATAAAAATTCG
1 TGAAA-AAAAATTCG
33283710 TGAAAAAAAATTCG
1 TGAAAAAAAATTCG
33283724 TGGAAAAAAA
1 T-GAAAAAAA
33283734 GAGAGGATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.21
Consensus pattern (14 bp):
TGAAAAAAAATTCG
Found at i:33285913 original size:18 final size:17
Alignment explanation
Indices: 33285890--33285937 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
33285880 AGAGTGAGAA
33285890 TGAAAAAGAAAAGAAAAT
1 TGAAAAA-AAAAGAAAAT
* *
33285908 TGAAAAAAAAGGAAAAA
1 TGAAAAAAAAAGAAAAT
*
33285925 TGAGAGAAAAAAG
1 TGA-AAAAAAAAG
33285938 CAAAGAAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (17 bp):
TGAAAAAAAAAGAAAAT
Found at i:33289159 original size:39 final size:39
Alignment explanation
Indices: 33289114--33289210 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
33289104 TTAAATAGGG
33289114 TTTTAATATGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATATGTCTTAGTTTGATACATATTTAATAGTTGT
*
33289153 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATATGTCTTAGTTTGATACATATTTAATAGTTGT
*
33289192 TTTT-A-ATGTCTAAGTTTGA
1 TTTTAATATGTCTTAGTTTGA
33289211 GACTAATTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
37 12 0.22
38 1 0.02
39 42 0.76
ACGTcount: A:0.27, C:0.05, G:0.14, T:0.54
Consensus pattern (39 bp):
TTTTAATATGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:33289292 original size:32 final size:32
Alignment explanation
Indices: 33289256--33289350 Score: 136
Period size: 32 Copynumber: 3.0 Consensus size: 32
33289246 AGCCAAAATT
* *
33289256 AATTAGCCGATTAATGTGTTTCAAGTACATGC
1 AATTAGCTGATTAATGTGTTTCAGGTACATGC
* *
33289288 AATTAGCTGATTAATGTGTTTCAGGCACACGC
1 AATTAGCTGATTAATGTGTTTCAGGTACATGC
* *
33289320 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATGTGTTTCAGGTACATG
33289351 TATGGATGGC
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.35
Consensus pattern (32 bp):
AATTAGCTGATTAATGTGTTTCAGGTACATGC
Found at i:33290569 original size:48 final size:48
Alignment explanation
Indices: 33290512--33290633 Score: 190
Period size: 48 Copynumber: 2.5 Consensus size: 48
33290502 AACAGAGATG
* * *
33290512 CATTGAACAAACAAGACATTTAATAATGTAGATTACTAAACAAAGACA
1 CATTCAACAAACAAAACACTTAATAATGTAGATTACTAAACAAAGACA
* **
33290560 CATTTAACAAACAAAACACTTAATAATGTAGATTACTAAACAAAGATG
1 CATTCAACAAACAAAACACTTAATAATGTAGATTACTAAACAAAGACA
33290608 CATTCAACAAACAAAACACTTAATAA
1 CATTCAACAAACAAAACACTTAATAA
33290634 AGCATAGTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.53, C:0.16, G:0.07, T:0.23
Consensus pattern (48 bp):
CATTCAACAAACAAAACACTTAATAATGTAGATTACTAAACAAAGACA
Found at i:33293858 original size:50 final size:50
Alignment explanation
Indices: 33293782--33293919 Score: 136
Period size: 50 Copynumber: 2.7 Consensus size: 50
33293772 ATGATCATTT
* * *
33293782 AAGTTTGCATCATAAAT-AATGACATGCATTAAGTAACTTACATGTTAGTTA
1 AAGTATGCATCATAAATCTAT--CATGCATTAAGTAACTCACATGTTAGTTA
* * *
33293833 CA-TATGCATCATAAATCCTATCATGCATTATGTAACTCCCATGTTAGTTA
1 AAGTATGCATCATAAAT-CTATCATGCATTAAGTAACTCACATGTTAGTTA
* * *
33293883 AAGTTTGCATCATTAAATCAAGTCATGCATTTAGTAA
1 AAGTATGCATCA-TAAATCTA-TCATGCATTAAGTAA
33293920 TCCATTAGTT
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
50 40 0.56
51 11 0.15
52 20 0.28
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (50 bp):
AAGTATGCATCATAAATCTATCATGCATTAAGTAACTCACATGTTAGTTA
Found at i:33296064 original size:48 final size:45
Alignment explanation
Indices: 33296012--33296150 Score: 129
Period size: 48 Copynumber: 2.9 Consensus size: 45
33296002 GTTGATGCAT
* *
33296012 TAATGCAAGGCATTTAACAGAGATGCATTTAACAAACAAAACATTTAA
1 TAATGC-AGG-ATTTAACA-AGATGCATTTAATAAACAAAACACTTAA
*
33296060 TAATGTA-GATTACTAAACAATGATGCATTTAATAAACAAAACACTTAA
1 TAATGCAGGATT--T-AACAA-GATGCATTTAATAAACAAAACACTTAA
*
33296108 TGATGCA-GATTATTAAACAAAGATGCATTTAATAAACAAAACA
1 TAATGCAGGA-T-TT-AAC-AAGATGCATTTAATAAACAAAACA
33296151 ATAAATGAAG
Statistics
Matches: 79, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
45 3 0.04
46 1 0.01
47 3 0.04
48 68 0.86
49 3 0.04
50 1 0.01
ACGTcount: A:0.50, C:0.13, G:0.11, T:0.27
Consensus pattern (45 bp):
TAATGCAGGATTTAACAAGATGCATTTAATAAACAAAACACTTAA
Found at i:33296101 original size:24 final size:24
Alignment explanation
Indices: 33296074--33296152 Score: 60
Period size: 28 Copynumber: 3.3 Consensus size: 24
33296064 GTAGATTACT
33296074 AAACAATGATGCATTTAATAAACAA
1 AAACAATGATGCATTTAATAAAC-A
* *
33296099 AACACTTAATGATGCAGATTATTAAAC-
1 AA-AC--AATGATGCA-TTTAATAAACA
33296126 --A-AA-GATGCATTTAATAAACA
1 AAACAATGATGCATTTAATAAACA
33296146 AAACAAT
1 AAACAAT
33296153 AAATGAAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 19
0.64 0.06 0.30
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 2 0.05
22 1 0.02
23 2 0.05
24 1 0.02
25 2 0.05
26 2 0.05
28 9 0.22
29 8 0.20
ACGTcount: A:0.53, C:0.13, G:0.09, T:0.25
Consensus pattern (24 bp):
AAACAATGATGCATTTAATAAACA
Found at i:33296134 original size:20 final size:19
Alignment explanation
Indices: 33296109--33296147 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
33296099 AACACTTAAT
*
33296109 GATGCAGATTATTAAACAAA
1 GATGCA-ATTAATAAACAAA
*
33296129 GATGCATTTAATAAACAAA
1 GATGCAATTAATAAACAAA
33296148 ACAATAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.51, C:0.10, G:0.13, T:0.26
Consensus pattern (19 bp):
GATGCAATTAATAAACAAA
Found at i:33296158 original size:48 final size:48
Alignment explanation
Indices: 33296027--33296158 Score: 183
Period size: 48 Copynumber: 2.8 Consensus size: 48
33296017 CAAGGCATTT
* * * * *
33296027 AACAGAGATGCATTTAACAAACAAAACATTTAATAATGTAGATTACTA
1 AACAAAGATGCATTTAATAAACAAAACAATTAATGATGCAGATTACTA
* * *
33296075 AACAATGATGCATTTAATAAACAAAACACTTAATGATGCAGATTATTA
1 AACAAAGATGCATTTAATAAACAAAACAATTAATGATGCAGATTACTA
*
33296123 AACAAAGATGCATTTAATAAACAAAACAATAAATGA
1 AACAAAGATGCATTTAATAAACAAAACAATTAATGA
33296159 AGAATAAATA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (48 bp):
AACAAAGATGCATTTAATAAACAAAACAATTAATGATGCAGATTACTA
Found at i:33298695 original size:215 final size:216
Alignment explanation
Indices: 33298168--33300868 Score: 3077
Period size: 216 Copynumber: 12.5 Consensus size: 216
33298158 TTTGCAATTC
* * * * *
33298168 CTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTCGTTCATGGATGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * *
33298233 CTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGAATTCAAGACG
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
* ** * * *
33298298 ATCCGTTCCTTCGACCAATTTTTTGAACATTCCATGCTCA-GGAAACCACATCATTTGGTGAAAA
131 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCT-AGGGAAATCGCATCATTTGGTCAAAA
33298362 TAGTTTGTCATTTTGTAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* * * * *
33298384 CTTTTGGTCTTTAAATAAAAAACTTATTTATGAGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * *
33298449 ATTCCAAACTTGTCAAATATTTATGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
* * * * *
33298514 ATCCATTCCTTCGATCAATTTTCCGACCATTTCATGCAAGGGAAATCACATCATTTGGT-ATAAA
131 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCA-AAA
33298578 -AGTTTGTCATTTTGTAAACAA
195 TAGTTTGTCATTTTGTAAACAA
* * *
33298599 CTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * ** ** * *
33298664 CTTTCGATCTTATTAAACATTTAAAAGTTCTTTTATAACTTCAATTCTTGAGAGTATTCAACACA
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
* * * * ** * *
33298729 ATCCATTGCTTTGACAAAATTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAAT
131 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCAAAAT
* * *
33298794 AGTTTATTATTTTGTACACAA
196 AGTTTGTCATTTTGTAAACAA
* * *
33298815 CTTTTTGTCTTTGAA-TAAAAACTTATTTACGTGGGAATT-TTTCCTCTCTT-TTTCTTGGACGA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT-CTCTCTTGGTTCTTGGACGA
* * *
33298877 ACTTCCGAACTTGTCAAAC-TTTCATGAGTTCTTTTATAACTTTGGTTGCTT-AAAGTATTCAAG
65 ACTTCCGAACTTGTCAAACATTT-ACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATTCAAG
* * * * * * * *
33298940 ACGATCTATTCCTTCGAGCAATTTTTCGAACATTCCGTGCT-CGGAAATCGTATCATTTGCTCTA
128 ACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCAA
33299004 AATAGTTTGTCATTTTGTAAACAA
193 AATAGTTTGTCATTTTGTAAACAA
* *
33299028 CTTTTGGTCTTTGAATTAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * * **
33299093 CTTCCGAACTTGTCAAACATTTACGAGTCCTTTTATAACTTCGATTCCTAAGAATATTCAAGGTG
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
* * * * * *
33299158 ATCCATTCCTTCGACCAATTTTCCAAACATTCCATGCTCGGAAAATCGCATCGTTTCGTCTAAA-
131 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCAAAAT
* *
33299222 A-TCTATCATTTTGTAAACAA
196 AGTTTGTCATTTTGTAAACAA
* * * * * * *
33299242 CATTTT-GTCTTTTAATTAAAAATTTATTTCCGTGAGAATTGTTTCTCTATTGATTCTAGGATGA
1 C-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * *
33299306 ACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGGGTCCTTTGA-A-TATTCAAG
65 ACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTC-GGTTC-TTGAGAGTATTCAAG
* ** * **
33299369 ACGATCCATTCCTTCGACCAATTTTCCGAACCTTCCATTTTTGGGAAATCATATCATTTGGTCAA
128 ACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCAA
* *
33299434 AATAGTTTTTCATTTTGTTAACAA
193 AATAGTTTGTCATTTTGTAAACAA
* * *
33299458 CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
** * * * * * * *
33299523 CTTCTAAACTTATCAGACATCTACAAGTTCTTTTATAACTTCGGTTCCTGAGAATACTCAAGACG
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
* * * * * * * *
33299588 ATCCAGTCCTTCAACCAATTTTTCAAACATTCCAAGCTCA-GCAAATTGCATCATTTGGTCTAAA
131 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCT-AGGGAAATCGCATCATTTGGTCAAAA
33299652 TAGTTTGTCATTTTGTAAA-AA
195 TAGTTTGTCATTTTGTAAACAA
* * *
33299673 TCTTTTGGTCTTTGAATTAAAAACTT-TTTAACGTGGGAATTGTATCTCTCTTTGTTCTTGGACG
1 -CTTTTGGTCTTTGAATTAAAAACTTATTT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * *
33299737 AACTTCCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCGATTCCTTTA-A-TATTCAAG
64 AACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTT-CTTGAGAGTATTCAAG
* * * * * *
33299800 ACTATCCATTCCCTT-GACCAATTTTCTGAACCTTTCATTCTTGGGAAATCGCATCATCTT-GTC
128 ACGATCCATT-CCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCAT-TTGGTC
* * *
33299863 AAAATAGTTTTTCATTTTATTAACAA
191 AAAATAGTTTGTCATTTTGTAAACAA
* * **
33299889 CTTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTCATTCTTGGACGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * * * *
33299954 CTTCTGAACATGTCAAACATTTACGAGTTCTTTTATAATTTTGATTCCTGAGAGTATTCAAGACT
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
* *** * *
33300019 ATCCGTTCCTTCGACCAATTTTTTTTAACTTTCCATGCTTA-GGAAATCGCATCATTTGGTGAAA
131 ATCCATTCCTTCGACCAA-TTTTCCGAACATTCCATGC-TAGGGAAATCGCATCATTTGGTCAAA
*
33300083 ATAGTTTGTTATTTTGTAAACAA
194 ATAGTTTGTCATTTTGTAAACAA
* * * * *
33300106 CTTTTGGTCTTTTAATTAGAAACTTATTTACGAGAGAATTGTTTTTCTCTTGGTTCTTGGACAAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * *
33300171 CTTCCGAACTTGTCAAATATTTACAAGTTCTTTTATAACTT-GATTCTTGAGAGTATTCAAGACA
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
* * * * *
33300235 ATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCA-AGAAAACGCATCGTTTGGTCTAAA
131 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCT-AGGGAAATCGCATCATTTGGTC-AAA
*
33300299 AT-GATTGTCATTTTGTAAACAA
194 ATAGTTTGTCATTTTGTAAACAA
* * * * * *
33300321 CTTTTTGTCTTTGAATTAAAAATTTATTCACGTGAGAATTATTTCTCTATTGGGTCTT-GACGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * *
33300385 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATATAGCTTCGGTTCCTGATAATATTCAAGA
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA-A-CTTCGGTTCTTGAGAGTATTCAAGA
* ** * * * * **
33300450 TGATCCATTCCTTCGACCAATTTTTTGAACCTTTCATTCTCGGGAAATCATATCATTTGGTCAAA
129 CGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCAAA
* *
33300515 ATAGTTTTTCATTTTGTTAACAA
194 ATAGTTTGTCATTTTGTAAACAA
* * * *
33300538 CTTTTGGTCTTTGAATTAAAAACATACTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAA
1 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* ** * * * *
33300603 CTTTCGAACTTGTCAAACATTTACGAGTTCTTACATAACTTTGGTTCCTGAGAATATTCAAGACA
66 CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
* * * *
33300668 ATCCATTCCTTCGACCAATTTTCTGAACTTTCCATGCTTGGGAAATCGCATCATTTGGTCTAAAT
131 ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCAAAAT
*
33300733 AGTTTGTCATTTTATAAA-AA
196 AGTTTGTCATTTTGTAAACAA
* * *
33300753 TCTTTTGGTCTTTGAATT-AAAACTT-TTATATGTGGGAATTGTATATCTCTCTT-TTTCCTTGG
1 -CTTTTGGTCTTTGAATTAAAAACTTATT-TACGTGAGAATTGT-T-TCTCTCTTGGTT-CTTGG
*
33300815 ACGAACTTCCGAACTTGTCAAATATTTACGAGTTCTTTTATAACTTCGGTTCTT
61 ACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTT
33300869 TTAAATATTC
Statistics
Matches: 2090, Mismatches: 346, Indels: 97
0.83 0.14 0.04
Matches are distributed among these distances:
213 56 0.03
214 335 0.16
215 624 0.30
216 697 0.33
217 337 0.16
218 41 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACG
ATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTAGGGAAATCGCATCATTTGGTCAAAAT
AGTTTGTCATTTTGTAAACAA
Found at i:33306745 original size:27 final size:27
Alignment explanation
Indices: 33306707--33306760 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
33306697 GGGATTGTCA
*
33306707 CGACATTGAATGTGGTCGTCGTGACAT
1 CGACATTGAATGTGGTCATCGTGACAT
*
33306734 CGACGTTGAATGTGGTCATCGTGACAT
1 CGACATTGAATGTGGTCATCGTGACAT
33306761 TGGGATCAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (27 bp):
CGACATTGAATGTGGTCATCGTGACAT
Found at i:33320611 original size:48 final size:48
Alignment explanation
Indices: 33320574--33320702 Score: 197
Period size: 48 Copynumber: 2.7 Consensus size: 48
33320564 CTAGACATTT
* * *
33320574 AACAAAGATGCATTTATCAAACAAAACATTTAATAATGTAGATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGTAGATTATTA
*
33320622 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGTAGATTATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGTAGATTATTA
* *
33320670 AACAAATATGCATTTAACAAA-AAAAAACTTAAT
1 AACAAAGATGCATTTAACAAACAAAACACTTAAT
33320703 GAAGCATAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
47 11 0.15
48 64 0.85
ACGTcount: A:0.53, C:0.12, G:0.08, T:0.27
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATAATGTAGATTATTA
Found at i:33324176 original size:18 final size:18
Alignment explanation
Indices: 33324145--33324179 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33324135 CAAAAAAGTA
*
33324145 GAGAAAAAGGAAAAATAC
1 GAGAAAAAAGAAAAATAC
*
33324163 GAGAAAAAATAAAAATA
1 GAGAAAAAAGAAAAATA
33324180 AAAATATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.17, T:0.09
Consensus pattern (18 bp):
GAGAAAAAAGAAAAATAC
Found at i:33328979 original size:19 final size:21
Alignment explanation
Indices: 33328955--33328995 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
33328945 ACGACGAATC
33328955 TGGCCA-T-GATGTCACGACA
1 TGGCCATTGGATGTCACGACA
*
33328974 TGGCCATTGGGTGTCACGACA
1 TGGCCATTGGATGTCACGACA
33328995 T
1 T
33328996 ACCTGCGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
21 12 0.63
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (21 bp):
TGGCCATTGGATGTCACGACA
Found at i:33331584 original size:51 final size:51
Alignment explanation
Indices: 33331523--33331660 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 51
33331513 TGCATGACTT
*
33331523 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATG-TCAG
* * *
33331575 GATTTATGATGCATA-TTTAACTAACATGTA-AGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAACTTTAACTAACATG-AGAGTTACATAATGCATGTCAG
* *
33331625 TATTTATGATGCAAAC-TTAACTGATCATGAGAGTTA
1 GATTTATGATGCAAACTTTAACT-AACATGAGAGTTA
33331661 ATGGATGTCA
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
49 1 0.01
50 49 0.66
51 19 0.26
52 5 0.07
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (51 bp):
GATTTATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGTCAG
Found at i:33334225 original size:25 final size:25
Alignment explanation
Indices: 33334197--33334286 Score: 78
Period size: 25 Copynumber: 3.5 Consensus size: 25
33334187 CTTTTTCTTC
33334197 TTTTTTCTTTTTTTAATTCAAATTT
1 TTTTTTCTTTTTTTAATTCAAATTT
*
33334222 TTTTTTTTTTTTTTCAAACTTCGAAATTT
1 TTTTTTCTTTTTTT--AA-TTC-AAATTT
** *
33334251 TTTTTT-TTTTCAATATTTC-AA-TT
1 TTTTTTCTTTT-TTTAATTCAAATTT
33334274 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
33334287 CGAATTTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
23 8 0.15
24 6 0.11
25 13 0.25
26 3 0.06
27 3 0.06
28 7 0.13
29 13 0.25
ACGTcount: A:0.18, C:0.09, G:0.01, T:0.72
Consensus pattern (25 bp):
TTTTTTCTTTTTTTAATTCAAATTT
Found at i:33334228 original size:28 final size:29
Alignment explanation
Indices: 33334197--33334260 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
33334187 CTTTTTCTTC
*
33334197 TTTTTTCTTTTTTT--AA-TTC-AAATTT
1 TTTTTTTTTTTTTTCAAACTTCGAAATTT
33334222 TTTTTTTTTTTTTTCAAACTTCGAAATTT
1 TTTTTTTTTTTTTTCAAACTTCGAAATTT
33334251 TTTTTTTTTT
1 TTTTTTTTTT
33334261 CAATATTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 13 0.38
27 2 0.06
28 3 0.09
29 16 0.47
ACGTcount: A:0.17, C:0.08, G:0.02, T:0.73
Consensus pattern (29 bp):
TTTTTTTTTTTTTTCAAACTTCGAAATTT
Found at i:33334229 original size:29 final size:31
Alignment explanation
Indices: 33334188--33334261 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 31
33334178 TTTTTTCTTC
**
33334188 TTTTTCTTCTTTTTTCTTTTTTTAA-TTC-AAA
1 TTTTT-TT-TTTTTTCTTTTTCAAACTTCGAAA
33334219 -TTTTTTTTTTTT-TTTTTCAAACTTCGAAA
1 TTTTTTTTTTTTTCTTTTTCAAACTTCGAAA
33334248 TTTTTTTTTTTTTC
1 TTTTTTTTTTTTTC
33334262 AATATTTCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
27 7 0.19
28 9 0.24
29 5 0.14
30 16 0.43
ACGTcount: A:0.15, C:0.11, G:0.01, T:0.73
Consensus pattern (31 bp):
TTTTTTTTTTTTTCTTTTTCAAACTTCGAAA
Found at i:33334293 original size:25 final size:25
Alignment explanation
Indices: 33334222--33334293 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 25
33334212 ATTCAAATTT
*
33334222 TTTTTTTTTTTTTTCAAACTTCGAA
1 TTTTTTTTTTTTTTCAAATTTCGAA
*
33334247 ATTTTTTTTTTTTTCAATATTTC-AA
1 TTTTTTTTTTTTTTCAA-ATTTCGAA
*
33334272 TTTTTTTTCTTTTTTCGAATTT
1 TTTTTTTT-TTTTTTCAAATTT
33334294 TTTTTCACTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 29 0.71
26 12 0.29
ACGTcount: A:0.18, C:0.10, G:0.03, T:0.69
Consensus pattern (25 bp):
TTTTTTTTTTTTTTCAAATTTCGAA
Found at i:33334305 original size:20 final size:20
Alignment explanation
Indices: 33334253--33334310 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 20
33334243 CGAAATTTTT
*
33334253 TTTTTTTTCAATATTTC-AA
1 TTTTTTTTCAATTTTTCGAA
*
33334272 TTTTTTTTC-TTTTTTCGAA
1 TTTTTTTTCAATTTTTCGAA
*
33334291 TTTTTTTTCACTTTTTCGAA
1 TTTTTTTTCAATTTTTCGAA
33334311 ACAAGAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.15
19 20 0.59
20 9 0.26
ACGTcount: A:0.17, C:0.12, G:0.03, T:0.67
Consensus pattern (20 bp):
TTTTTTTTCAATTTTTCGAA
Found at i:33338473 original size:13 final size:13
Alignment explanation
Indices: 33338457--33338506 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
33338447 CATCAAAAGC
33338457 AAAAATAAATAAA
1 AAAAATAAATAAA
*
33338470 AAAAAT-AA-AAG
1 AAAAATAAATAAA
*
33338481 AAAAATAAAGAAA
1 AAAAATAAATAAA
*
33338494 TAAAATGAAATAA
1 AAAAAT-AAATAA
33338507 TTCCTATGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 8 0.27
12 4 0.13
13 13 0.43
14 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (13 bp):
AAAAATAAATAAA
Found at i:33338485 original size:24 final size:25
Alignment explanation
Indices: 33338451--33338499 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
33338441 AGCACACATC
*
33338451 AAAAGCAAAAATAAATAAAAAAAAT
1 AAAAGCAAAAATAAAGAAAAAAAAT
*
33338476 AAAAG-AAAAATAAAGAAATAAAAT
1 AAAAGCAAAAATAAAGAAAAAAAAT
33338500 GAAATAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (25 bp):
AAAAGCAAAAATAAAGAAAAAAAAT
Found at i:33338486 original size:20 final size:20
Alignment explanation
Indices: 33338463--33338503 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
33338453 AAGCAAAAAT
33338463 AAATAAAAAAAATAAAA-GAA
1 AAAT-AAAAAAATAAAATGAA
*
33338483 AAATAAAGAAATAAAATGAA
1 AAATAAAAAAATAAAATGAA
33338503 A
1 A
33338504 TAATTCCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.12
Consensus pattern (20 bp):
AAATAAAAAAATAAAATGAA
Found at i:33338504 original size:10 final size:9
Alignment explanation
Indices: 33338458--33338506 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
33338448 ATCAAAAGCA
*
33338458 AAAATAAAT
1 AAAAGAAAT
*
33338467 AAAAAAAAT
1 AAAAGAAAT
*
33338476 AAAAGAAAA
1 AAAAGAAAT
33338485 ATAAAGAAAT
1 A-AAAGAAAT
33338495 AAAATGAAAT
1 AAAA-GAAAT
33338505 AA
1 AA
33338507 TTCCTATGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
9 19 0.56
10 15 0.44
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (9 bp):
AAAAGAAAT
Found at i:33351392 original size:32 final size:32
Alignment explanation
Indices: 33351341--33351420 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
33351331 CGGTAACTTA
* * * *
33351341 GTTTCAGGTATATGCAATTAGCTAATTAATGT
1 GTTTTAGGTACATGTAATTAGCTAATTAATAT
*
33351373 GTTTTAGGTACATGTAATTAGCTGATTAATAT
1 GTTTTAGGTACATGTAATTAGCTAATTAATAT
*
33351405 ATTTTAGGTACATGTA
1 GTTTTAGGTACATGTA
33351421 TGGATGGCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.42
Consensus pattern (32 bp):
GTTTTAGGTACATGTAATTAGCTAATTAATAT
Found at i:33352957 original size:216 final size:216
Alignment explanation
Indices: 33352406--33353515 Score: 1338
Period size: 216 Copynumber: 5.1 Consensus size: 216
33352396 ACATACCTTG
* * *
33352406 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTCCAAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
* * * *
33352471 TGTAAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGATGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCT
* *
33352536 TCCAGCAATTTTCTGAACATTCCATGCTC-AGGAAATTGCATCATTTGGTCTAAATAGTTT-TCC
131 TCCAGCAATTTTCCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGT-C
33352599 ATTTTGTAAACAAGTTTTGGT-T
194 ATTTTGTAAACAAGTTTTGGTCT
* * * ** * *
33352621 TGTG-ATTATAAACTTATTTACGTGAGAATT-TTTATCTCTTGATTCTTGGGTGAACTTACGAAC
1 T-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
** * * ** *
33352684 TTGTCAAACTTTTACGCTTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACGATCCACTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCC
* * * * * * *
33352749 TTCCAACAATATCCCAAACATTCCATCCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCA
130 TTCCAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
33352814 TTTTGTAAACAAGTTTTGTTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * * * ***
33352836 TCGAATTAAAAATTTATCTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTTTGAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
*
33352901 TGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCT
* * * * * ** *
33352966 TCTAGGAATTTTTCGAACATTCCATGCTCAAGAAATCGCATTATTTCAT-TGAAATAGTTTATCA
131 TCCAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT-AAATAGTTTGTCA
*
33353030 TTTTGTAAACGAGTTTTGGTCT
195 TTTTGTAAACAAGTTTTGGTCT
*
33353052 TTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
* * * *
33353117 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTCAGAAA-ATTCAAGATGATCCATTCA
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAACATTCAAGACGATCCATTCC
* ** *
33353181 TTCAAGCAATTTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCA
130 TTCCAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
33353246 TTTTGTAAACAAGTTTTAGTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * * * * * * * * *
33353268 TTAAATTAAAAACATATATACATGAGAATTGTTTCTATCTTGGCTCTTTGACAAATTTACAAACT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
* * ** *
33353333 TGTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAAAGACGATCCATTCC-
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCT
* * * * *
33353397 TCCGAGCAATATTACGACCATTCCATGCTCGCGAAATCGCAT-ATTTTGGTCTAAATAGTTTGTT
131 TCC-AGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCA-TTTGGTCTAAATAGTTTGTC
**
33353461 ATTTCATAAACAAGTTTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* * * *
33353484 TTAAATTGAAATCCTATTTACGTGAGAATTGT
1 TTGAATTAAAAACTTATTTACGTGAGAATTGT
33353516 GTGATGTGAG
Statistics
Matches: 756, Mismatches: 127, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
214 154 0.20
215 57 0.08
216 541 0.72
217 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.40
Consensus pattern (216 bp):
TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCT
TCCAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGTCT
Found at i:33353887 original size:48 final size:48
Alignment explanation
Indices: 33353812--33353922 Score: 170
Period size: 48 Copynumber: 2.3 Consensus size: 48
33353802 TATTTATGCT
33353812 TCATTAAGTGTTTT-TTTGTTAAATGCATCATTGTTTAATAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCATTGTTTAATAATCTGCA
* *
33353859 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCATTGTTTAATAATCTGCA
* * *
33353907 TTAATAATTGTTTTGT
1 TCATTAAGTGTTTTGT
33353923 GATATGACCA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
47 14 0.24
48 44 0.76
ACGTcount: A:0.25, C:0.09, G:0.14, T:0.51
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTTTGTTAAATGCATCATTGTTTAATAATCTGCA
Found at i:33354317 original size:39 final size:39
Alignment explanation
Indices: 33354271--33354361 Score: 146
Period size: 39 Copynumber: 2.3 Consensus size: 39
33354261 TTAAATAGGG
* *
33354271 TTTTAATGTGTCTTAGTTTGATACATATTTAATGGTTGT
1 TTTTAATGTGTCTTAGTTTAATACATATTTAATAGTTGT
*
33354310 TTTTAATGTGTCCTAGTTTAATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTAATACATATTTAATAGTTGT
*
33354349 TTTTAATATGTCT
1 TTTTAATGTGTCT
33354362 AAGATTGAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTAATACATATTTAATAGTTGT
Found at i:33354451 original size:32 final size:32
Alignment explanation
Indices: 33354415--33354509 Score: 172
Period size: 32 Copynumber: 3.0 Consensus size: 32
33354405 AGCTGAAATT
33354415 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATGTGTTTCAGGTACATGC
33354447 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATGTGTTTCAGGTACATGC
* *
33354479 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATGTGTTTCAGGTACATG
33354510 TATGGATGGC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.38
Consensus pattern (32 bp):
AATTAGCTGATTAATGTGTTTCAGGTACATGC
Found at i:33356036 original size:216 final size:216
Alignment explanation
Indices: 33355481--33358102 Score: 3149
Period size: 216 Copynumber: 12.1 Consensus size: 216
33355471 ACATACCTTG
* * * *
33355481 TTGAATTAAAAACTTATAAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACT
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
* * * * *
33355546 TGTAAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGATGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCT
** * *
33355611 TCCAGCAATTTTCTAAACATTCCATGCTCAGGAAATTGCATCATTTGGTCTAAATAGTTT-TCCA
131 TCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT-CA
33355675 TTTTGTAAACAAGTTTTGGT-T
195 TTTTGTAAACAAGTTTTGGTCT
* * * * ** *
33355696 TGTG-ATTATAAACTTATTTACGTGAGAATT-TTTATCTCTTGATTCTTGGGTGAACTTACGAAC
1 T-TGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC
** * * * * *
33355759 TTGTCAAACTTTTACGCTTTTTTTTATAACTTCGATTCCTTATAGTATTCAAGACGATCCATTCA
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCC
* * * * * **
33355824 TTCCAACAATGTTCCAAACATTCCTTCCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCA
130 TTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
33355889 TTTTGTAAACAAGTTTTGTTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * *
33355911 TTGAATTAAAAATTTATCTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTTCGAACT
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
* * ** *
33355976 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTATAGTATTCGTGATGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCT
* * * *
33356041 TCAAGCAATTTTTCGAACATTCTATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTGTTC-
131 TCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG-TCA
33356105 TTTTGTAAACAAGTTTTGGTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * *
33356127 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCAAACT
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
* * ** * *
33356192 TGTCAAACTTTTACGAGTTCTTTTATAACTTTGGCTCAGTAAAACATTCAAGACGATCCGTTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCT
* * * * * * *
33356257 TCCAGCAGTTTTCTGAACATTCCATGCTCGAGATATCGCATCATTTGGTCTACATAGTTTATTAT
131 TCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
*
33356322 TTTGTAAACAAGCTTTGGTCT
196 TTTGTAAACAAGTTTTGGTCT
* * * * *
33356343 TTAAATTAAAAACTTACATACATGATAATTGTTTCTTTCTTGGTTCTTGGACGAACTTTCGAACT
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
* * *
33356408 TGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCT
* * * * * * * * * * * *
33356473 TCCAACAATTTTTCGAACATTCGATTCTTGTGAAATCGCATTATTTAGTTTAAATAGTTCGACAA
131 TCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
33356538 TTTGTAAACAAGTTTAT-GTCT
196 TTTGTAAACAAGTTT-TGGTCT
* * * * *
33356559 TTGAATTAAAAACTTACATACGTGAGAATTGTTTCTATCTTGATTCCTGCACGAACTTTCGAACT
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
* * * *
33356624 TGTCAAACTTTTACAAGTTCTTTTATAACTTTGGCTCCTTAAAGTATTCAAGACGATCCATTCCT
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCT
* * * * *
33356689 TTCAGTAATTTTCCTAACATTCCATGCT-GGAGAAATCGCATTAGTTGGTCTAAATAGTTTGTCA
131 TCCAGCAATTTTCCGAACATTCCATGCTCGG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
33356753 TTTTGTAAACAAGTTTTGTTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * * * * *
33356775 TTGAATTAAAAACTTATATATGTTAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
* * * * *
33356840 TGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAACATTCAAGACAATCCATTCCA
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCT
* * * **
33356905 TCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATTATTTCAT-TGAAATAGTTTGTCA
131 TCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCA
33356969 TTTTGTAAACAAGTTTTGGTCT
195 TTTTGTAAACAAGTTTTGGTCT
* * *
33356991 TTGAATTAAAAACTTATATACGTGATAATTGTTTCTCTCTTGGTTCTTGGATGAAC-TTCTGAAT
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAAC
* * *
33357055 TTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGAGGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCC
* * * *
33357120 TTCCAGTAATTTTCCGAACATTCCATGCTCAGCAAATTGCATCATTTGGTCTAAATAGTTT-TCC
130 TTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT-C
33357184 ATTTTGTAAACAAGTTTTGGT-T
194 ATTTTGTAAACAAGTTTTGGTCT
* * * * * * * *
33357206 TGTGAATTAAAATCCTATTTACGTGAGAATT-TTTATCTCTTGATTCTAGGATGAACTTACGAAC
1 T-TGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC
* * * * * * *
33357270 ATGTCAAACTTTTAC-ACGTTCTTCTATAACTTTGATTCCTTATAGTATTCAAGACAATCCATTC
65 TTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTC
* * *
33357334 CTTCCAACAATGTTCCAAACATTCCAT-CATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
129 CTTCCAGCAATTTTCCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
33357398 CATTTTGTAAACAAGTTTTGTTCT
193 CATTTTGTAAACAAGTTTTGGTCT
* * * *
33357422 TTGAATTAAAAACTTATATACGTGAGAATTGTTTTGTCTCTGGGTTCTTGGACAAACTTTTGAAC
1 TTGAATTAAAAACTTATATACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC
* *
33357487 TTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCC
* * * ** **
33357552 TTCTAGGAATTTTTCGAACATTCCATGCTCAAGAAATCGCATCATTTCAT-TGAAATAGTTTGTC
130 TTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTC
*
33357616 ATTTTGTAAACGAGTTTTGGTCT
194 ATTTTGTAAACAAGTTTTGGTCT
* * * * *
33357639 TTGAATTAAAAACTTATTTACGTGAGAATAGTTACTCTCTTGGTTCTTGGACGAACTTCCAAACT
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
* ** * * *
33357704 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCCCAGAAA-ATTCAAGATGATCCGTTCA
66 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAATATTCAAGACGATCCATTCC
* ** *
33357768 TTCAAGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
130 TTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
*
33357833 TTTTGTAAACAAGTTTTAGTCT
195 TTTTGTAAACAAGTTTTGGTCT
** * * * * * *
33357855 TAAAATTAAAAACATATATACATGAGAATTGTTTCTATCTTGGTTCTTTGAC-AAATTTACAAAC
1 TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT-CGAAC
* * * * * *
33357919 TTGTCAAACTTTTACAAGTTCTTTTAAAACTTTGGTTCCTTAAAGTATTAAAGATGATCCATTCC
65 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCC
* * ** *
33357984 -TCCGAGCAATATTCCGACCATTCCATGCTCACGAAATTGCAT-ATTTTGGTCTAAATAGTTTGT
130 TTCC-AGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGT
* **
33358047 TATTTCATAAACAAGTTTTGGTCT
193 CATTTTGTAAACAAGTTTTGGTCT
* * * * *
33358071 TTAAATTGAAATCCTATTTACGTGAGAATTGT
1 TTGAATTAAAAACTTATATACGTGAGAATTGT
33358103 GTGATGTGAG
Statistics
Matches: 2052, Mismatches: 323, Indels: 63
0.84 0.13 0.03
Matches are distributed among these distances:
214 158 0.08
215 246 0.12
216 1457 0.71
217 189 0.09
218 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
TTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCT
TCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGTCT
Found at i:33358478 original size:48 final size:48
Alignment explanation
Indices: 33358399--33358511 Score: 163
Period size: 48 Copynumber: 2.3 Consensus size: 48
33358389 TATTTATGCT
* *
33358399 TCATTAAGTGTTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTG-TTTTGTCTGTTAAATGCATCTTTGTTTAATAATCTGCA
* *
33358448 TCATTAAGTGTTTTGTCTGTTAAATGCATCTTTTTTTAGTAATCTGCA
1 TCATTAAGTGTTTTGTCTGTTAAATGCATCTTTGTTTAATAATCTGCA
* *
33358496 TTATTAATTGTTTTGT
1 TCATTAAGTGTTTTGT
33358512 GAAATGGCCA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 48 0.83
49 10 0.17
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTCTGTTAAATGCATCTTTGTTTAATAATCTGCA
Found at i:33358913 original size:39 final size:39
Alignment explanation
Indices: 33358870--33358960 Score: 164
Period size: 39 Copynumber: 2.3 Consensus size: 39
33358860 TTAAATAGGG
*
33358870 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTAATACATATTTAATAGTTGT
*
33358909 TTTTAATGTGTCCTAGTTTAATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTAATACATATTTAATAGTTGT
33358948 TTTTAATGTGTCT
1 TTTTAATGTGTCT
33358961 AAGATTGAGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.54
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTAATACATATTTAATAGTTGT
Found at i:33359050 original size:32 final size:32
Alignment explanation
Indices: 33359014--33359108 Score: 172
Period size: 32 Copynumber: 3.0 Consensus size: 32
33359004 AGCTGAAATT
33359014 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATGTGTTTCAGGTACATGC
33359046 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATGTGTTTCAGGTACATGC
* *
33359078 AATTAGCTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATGTGTTTCAGGTACATG
33359109 TATGGATGGC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.38
Consensus pattern (32 bp):
AATTAGCTGATTAATGTGTTTCAGGTACATGC
Found at i:33360625 original size:80 final size:79
Alignment explanation
Indices: 33360521--33360677 Score: 269
Period size: 80 Copynumber: 2.0 Consensus size: 79
33360511 TCATTAAGGA
* * *
33360521 GAAATGCCATGCCTTTTCAGCTACATCAGATCCTAATGAAGAGACATGACTCATTGGCTTTCCTA
1 GAAATGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTA
33360586 CAAGAGTTAAAAAC
66 CAAGAGTTAAAAAC
*
33360600 GAAATTGCCATGCCTTTTTAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
1 GAAA-TGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
33360665 ACAAGAGTTAAAA
65 ACAAGAGTTAAAA
33360678 TGAAATTAGT
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 4 0.05
80 69 0.95
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.27
Consensus pattern (79 bp):
GAAATGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTA
CAAGAGTTAAAAAC
Found at i:33361846 original size:216 final size:215
Alignment explanation
Indices: 33361129--33365136 Score: 4349
Period size: 216 Copynumber: 18.7 Consensus size: 215
33361119 TATCATTATG
* * * * * * * *
33361129 TCTCTCTTGGTTCTAGGATGAACTTTCAAACTAGTCAAACTTCTACGAGTTCTTTTACAGCTTTG
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* ** * *
33361194 TTTCCTTACAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGAGA
66 -TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGA
*
33361259 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTATTCTTTGAATTAAAAA
130 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAA
* *
33361324 TTTATATACGTGAGAATTGTT
195 CTTATTTACGTGAGAATTGTT
* * *
33361345 TCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTA
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTC
* * * * *
33361410 GTTCCTTAAAACATTCAAGATGATCTATTCCTTCTAGTAATTTTTCGAACATTCCATGCTCGGGA
65 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGA
* * * *
33361475 AATTGCATC-TTTGGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTGGTT-TGTGAATTAAAA
130 AATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
* *
33361537 TCCTATTTACGTGAGAATT-TT
194 ACTTATTTACGTGAGAATTGTT
* * ** * * * *
33361558 TATCCCTTAATTCTAGGACGAACTTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* ** * * * * *
33361623 ATTCCTTATAGTATTCAAGACGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCTGGA
66 -TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGA
33361688 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAA
130 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAA
*
33361753 CTTATATACGTGAGAATTGTT
195 CTTATTTACGTGAGAATTGTT
* * *
33361774 TCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAATTTTTATGAGTTCTTTTATAACTTCA
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-
* * * * *
33361839 GTTCCTTAAAACATTCAAGACAATCTATTCCTTCCATCAATTTTTCGAACATTCCAAGCTCGGGA
65 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGA
** * ** * *
33361904 AATCGCATCATTTCATCATCGAAATAGTTTGACATTTTGTAAACAAGTTTTGGACCTTGAATTAC
130 AATCGCATCATTTGGTC-T--AAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAA
* *
33361969 AAACTTATTTATGTGAGAATAGTT
192 AAACTTATTTACGTGAGAATTGTT
* * * *
33361993 TCTCTCTTGTTTCTTGGACAAACTTCCAAAGTAGTCAAACTTTTACGAGTTCTTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-
*
33362058 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTC-GGA
65 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGA
* * * *
33362122 AATTGCATCATTTCGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTTGGTT-TGTGAATTAAA
130 AATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTTCTTTGAATTAAA
* *
33362185 ATCCTATTTACGTGAGAATT-TT
193 AACTTATTTACGTGAGAATTGTT
* * * * * * *
33362207 TATCCCTTGATTCTAGGACGAACTTACGAACTTGTTAAACTTTTAC-ACGTTCTTTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTC
* ** * * * * * * *
33362271 GATTCCTTATATTATTCAAGATGATCCATTCCTTCCAACAATGTTCCTAACATTCCTTCCTCGGG
65 G-TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGG
*
33362336 AAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
129 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
* *
33362401 ACTTCTATACGTGAGAATTGTT
194 ACTTATTTACGTGAGAATTGTT
** * * * * *
33362423 TCAGTCTAGGTTCTTGGATGAACTTTCAAACTTGTCAAACTTTTACTAGTTATTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-
* * * * *
33362488 GTTCCTTACAACATTCAAGACGATCCATTCCTTCGAGCAAATTTTCGAACATTCCATGCTCAGGA
65 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTC-GGG
* ** * * * *
33362553 AAAT-GAATCATTTCATCGAAATAGTTTGTCATTTTGTAAAGAAGTTTTGGTCTTTGAATTACAA
129 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
* *
33362617 ACTTATTTACATGAGAATAGTT
194 ACTTATTTACGTGAGAATTGTT
** * ** *
33362639 TCTCTCTTATTTGTTAAAAGAACTTCC-AACTTGTCAAACTTTTACGAGTTCTTTTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTC-TTTTATAACTTC
* * * * *
33362703 GGTTCCTTAAAACATTCAAGACGTTCCATTCGTTCCAGGAATTTTTCGAACATTCCATGCTGGGG
65 -GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGG
* * * *
33362768 AAATTGCATCATTTTGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTTGGTT-TGTGAATTAA
129 AAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTTCTTTGAATTAA
* *
33362831 AATCCTATTTACGTGAGAATT-TT
192 AAACTTATTTACGTGAGAATTGTT
* * * * * *
33362854 TATCCCTTGATTCTAGGACGAAC-TCACGAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTC-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* ** * * * * * * *
33362918 GATTCCTTATAGTATTGAGGACGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAG
65 G-TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGG
*
33362983 AAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
129 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
*
33363048 ACTTATATACGTGAGAATTGTT
194 ACTTATTTACGTGAGAATTGTT
* *
33363070 TCTCTCTTGGTTCTTGGACGAACTT-TAGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCCA-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * **
33363134 AGTTCCTTCAAACATTCAAGACGATCTATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGAC
65 -GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGG
* * * *
33363199 AAATGGCAGCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA
129 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
* * *
33363264 ACTTATATAGGTGAGAATTATT
194 ACTTATTTACGTGAGAATTGTT
* * ** *
33363286 TCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAAAAATTCTTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
33363351 ATTCTTTAAACCATTCAAGACGATCCATTCCTTCCAGTAATTTTTCGAACATTTCATGCTCGGGA
66 -TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGA
* * * * * * *
33363416 AATTGTACCATTTGGTCTAAGTAGTTT-TCCATTTTGTAAACAGGTTTTGGTT-TGTGAATCAAA
130 AATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTTCTTTGAATTAAA
* * *
33363479 ATCCTATTTACGTGATAATT-TT
193 AACTTATTTACGTGAGAATTGTT
* * * * * * * *
33363501 TATCCCTTGATTCTAGGACGAGCTTACGAACTTGTCAAACTTTTACGCA-TTCTTCTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG-AGTTCTTTTATAACTTC
* * ** * * * * * *
33363565 GATTCCATATAGTATTCAAGACGATCCATTTCTTCCAACAATGTTCCAAACATTCCATCCTCGGT
65 G-TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGG
*
33363630 AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
129 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
*
33363695 ACTTATATACGTGAGAATTGTT
194 ACTTATTTACGTGAGAATTGTT
* * *
33363717 TCTCT-TTGGGTTCTTGGACGAACTTCCAAGCTTGTCAAACTTTTACGAGTTCTTTGATAATTTT
1 TCTCTCTT-GGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAA-CTT
* * * * *
33363781 GGTTCCTTAAAACATTCAAGACAATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGAG
64 CGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGG
** * * *
33363846 AAATCGCATCATTTCAT-TGAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAG
129 AAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAA
** *
33363910 AACTTATTTAAATGAGAATAGTT
193 AACTTATTTACGTGAGAATTGTT
* *
33363933 TCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-
* *
33363998 GTTCCTTAAAATATTCAAGACGATCCATTCCTTCCAGCAA-TTTTCTAAACATTCCATGCTCTGG
65 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTC-AAACATTCCATGCTCGGG
*** * * * * *
33364062 -AATTATATCATTAGGTTTAAGTTGTTT-TCCATTTTGTAAACAAGTTTTGGTT-TGTGAATTAA
129 AAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTTCTTTGAATTAA
* *
33364124 AATCCTATTTACGTGAGAATT-TT
192 AAACTTATTTACGTGAGAATTGTT
* * * * * *** * *
33364147 TATCCCTCGATTCTAGGACGAACTTATGAACTTGTCAAACTTTTACGCGATTC-CTTAT-A----
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTC
* * * * * *
33364206 G-----T-----ATTCAAGATGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGA
65 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGA
* * *
33364261 AATCGCATCATTTGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAT
130 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAA
* *
33364326 CATATATACGTGAGAATTGTT
195 CTTATTTACGTGAGAATTGTT
* * *
33364347 TCTCT-TTGGGTTCCTGGACAAATTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
1 TCTCTCTT-GGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* ** **
33364411 GGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTTTGAACATTCCATGCTCGGG
65 -GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGG
* ** * * * * *
33364476 AAATTGCATCATTTCATCGAAATAGTTTGTCATCTTGTAAACAAGTTTTGGTGTTTGAATTACAA
129 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAA
*
33364541 ACTTATTTACGTGAGAATAGTT
194 ACTTATTTACGTGAGAATTGTT
*
33364563 TCTCTGTT-GTTACTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
1 TCTCTCTTGGTT-CTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* ** *
33364627 GGTTCCTTAGAACATTCAAGACGATCCATTCCTTCCAAAAAATTTTT-AAACATTCCATGCTTGG
65 -GTTCCTTAAAACATTCAAGACGATCCATTCCTTCC-AGCAATTTTTCAAACATTCCATGCTCGG
* * * * *
33364691 GAAATTGCATCATTTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTTGTT-TGTGAATTA
128 GAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAG-TTTTGTTCTTTGAATTA
* * *
33364754 AAATCCTATTTCCGTGAGAATT-TT
191 AAAACTTATTTACGTGAGAATTGTT
* * ** * * * *
33364778 TATCCCTTAATTCTAGGACGAACTTACGAACTTGTCAAACTTTTACGCA-TTTTTTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG-AGTTCTTTTATAACTTC
* *** * * * * * * *
33364842 GATTCCTTATAGTTTTCAAGATGA-CCAATTTCTTCCAACAATGTTCCAAACATCCCATCCTCGG
65 G-TTCCTTAAAACATTCAAGACGATCC-ATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGG
* * ** *
33364906 GAAACCACATCATTTACTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATAAAA
128 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAA
* *
33364971 AACTTATATACGT-AAAAGTTGTT
193 AACTTATTTACGTGAGAA-TTGTT
* * *
33364994 TCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCA
1 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-
* * * *
33365059 GTTGCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGCTCGGGA
65 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGA
33365124 AATCGCATCATTT
130 AATCGCATCATTT
33365137 CATCGAAATT
Statistics
Matches: 3154, Mismatches: 544, Indels: 188
0.81 0.14 0.05
Matches are distributed among these distances:
198 44 0.01
199 73 0.02
200 42 0.01
201 1 0.00
203 1 0.00
206 1 0.00
208 1 0.00
211 1 0.00
212 3 0.00
213 115 0.04
214 246 0.08
215 764 0.24
216 1625 0.52
217 43 0.01
218 18 0.01
219 176 0.06
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.39
Consensus pattern (215 bp):
TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGAA
ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAAC
TTATTTACGTGAGAATTGTT
Found at i:33362913 original size:431 final size:426
Alignment explanation
Indices: 33361134--33365136 Score: 4089
Period size: 431 Copynumber: 9.3 Consensus size: 426
33361124 TTATGTCTCT
* * * * * * * * * *
33361134 CTTGGTTCTAGGATGAACTTTCAAACTAGTCAAACTTCTACGAGTTCTTTTACAGCTTTGTTTCC
1 CTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* ** * *
33361199 TTACAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTC-GAGAAATC
65 TTAAAACATTCAAGACGATCCATTCCTTCCAGCAAATTTTCAAACATTCCATGCTCGGA-AAATC
** *
33361263 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTATTCTTTGAATTAAAAATTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAACTTA
* * *
33361328 TATACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAACTTTTACAA
193 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTACGA
** * * * *
33361393 GTTCTTTTATAACTTTAGTTCCTTAAAACATTCAAGATGATCTATTCCTTCTAGTAATTTTTCGA
257 GTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGA
* *
33361458 ACATTCCATGCTCGGGAAATTGCATC-TTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAG-TTT
322 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT-CATTTTGTAAACAAGTTTT
* *
33361521 GGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCC
386 GGTTT-TGAATTAAAAACTTATTTACGTGAGAATTTTTATCC
** * * * *
33361563 CTTAATTCTAGGACGAACTTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCC
1 CTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* ** * * *
33361628 TTATAGTATTCAAGACGATCCATTCCTTCCAAC-AATGTTCCAAACATTCCATCCTCTGG-AAAT
65 TTAAAACATTCAAGACGATCCATTCCTTCCAGCAAAT-TTTCAAACATTCCATGCTC-GGAAAAT
*
33361691 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTT
128 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAACTT
* * * *
33361756 ATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAATTTTTATG
192 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTACG
* * * *
33361821 AGTTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACAATCTATTCCTTCCATCAATTTTTCG
256 AGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCG
* ** *
33361886 AACATTCCAAGCTCGGGAAATCGCATCATTTCATCATCGAAATAGTTTGACATTTTGTAAACAAG
321 AACATTCCATGCTCGGGAAATCGCATCATTTGGTC-T--AAATAGTTT-TCATTTTGTAAACAAG
** * * * * *
33361951 TTTTGGACCTTGAATTACAAACTTATTTATGTGAGAATAGTTTCTCT
382 TTTTGG-TTTTGAATTAAAAACTTATTTACGTGAGAAT-TTTTATCC
* * * * *
33361998 CTTGTTTCTTGGACAAACTTCCAAAGTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * *
33362063 TTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGG-AAATTG
65 TTAAAACATTCAAGACGATCCATTCCTTCCAGCAAATTTTCAAACATTCCATGCTCGGAAAATCG
* * *
33362127 CATCATTTCGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTTGGT-TTGTGAATTAAAATCCT
130 CATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTTGGTCTT-TGAATTAAAA-CTT
* * * * * *
33362190 ATTTACGTGAGAATT-TTTATCCCTTGATTCTAGGACGAACTTACGAACTTGTTAAACTTTTAC-
192 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCAACTTGTCAAACTTTTACG
* * ** * * * *
33362253 ACGTTCTTTTATAACTTCGATTCCTTATATTATTCAAGATGATCCATTCCTTCCAACAATGTTCC
256 A-GTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTC
* * * *
33362318 TAACATTCCTTCCTCGGGAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTT
320 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTT
* * *
33362383 TTGTTCTTTGAATTAAAAACTTCTATACGTGAGAATTGTTTCAGT--
384 TTGGT-TTTGAATTAAAAACTTATTTACGTGAGAATT-TTT-A-TCC
* * * * * *
33362428 CTAGGTTCTTGGATGAACTTTCAAACTTGTCAAACTTTTACTAGTTATTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * *
33362493 TTACAACATTCAAGACGATCCATTCCTTCGAGCAAATTTTCGAACATTCCATGCTCAGGAAAAT-
65 TTAAAACATTCAAGACGATCCATTCCTTCCAGCAAATTTTCAAACATTCCATGCTC-GGAAAATC
* ** * *
33362557 GAATCATTTCATCGAAATAGTTTGTCATTTTGTAAAGAAGTTTTGGTCTTTGAATTACAAACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAACTTA
* * ** * ** *
33362622 TTTACATGAGAATAGTTTCTCTCTTATTTGTTAAAAGAACTTCCAACTTGTCAAACTTTTACGAG
193 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAACTTTTACGAG
* * *
33362687 TTCTTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGTTCCATTCGTTCCAGGAATTTTTCGA
258 TTC-TTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGA
* * * *
33362752 ACATTCCATGCTGGGGAAATTGCATCATTTTGTCTAAGTAGTTTTCCATTTTGTAAACAAGTTTT
322 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT-CATTTTGTAAACAAGTTTT
* *
33362817 GGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCC
386 GGTTT-TGAATTAAAAACTTATTTACGTGAGAATTTTTATCC
* * * *
33362859 CTTGATTCTAGGACGAACTCACGAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTCGATTCC
1 CTTGGTTCTTGGACGAACTC-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* ** * * * * *
33362924 TTATAGTATTGAGGACGATCCATTCCTTCCAAC-AATGTTCCAAACATTCCATCCTC-GAGAAAT
65 TTAAAACATTCAAGACGATCCATTCCTTCCAGCAAAT-TTTCAAACATTCCATGCTCGGA-AAAT
* *
33362987 CGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTT
128 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAACTT
* ** *
33363052 ATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACA
192 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAACTTTTACG
* * *
33363117 AGTTCTTTTATAACTTCAGTTCCTTCAAACATTCAAGACGATCTATTCCTTCCAGCAATTTTTCG
256 AGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCG
** * * *
33363182 AACATTCCATGCTCGACAAATGGCAGCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTT
321 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGTTT
* * * *
33363247 TGGTCTTTGAATTAAAAACTTATATAGGTGAGAATTATTTCTCG
385 TGGT-TTTGAATTAAAAACTTATTTACGTGAGAATT-TTTATCC
** * * *
33363291 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAAAAATTCTTTTATAACTTCGATTCT
1 CTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * * *
33363356 TTAAACCATTCAAGACGATCCATTCCTTCCAGTAATTTTTCGAACATTTCATGCTCGGGAAATTG
65 TTAAAACATTCAAGACGATCCATTCCTTCCAGCAAATTTTCAAACATTCCATGCTCGGAAAATCG
* * * * * *
33363421 TACCATTTGGTCTAAGTAGTTT-TCCATTTTGTAAACAGGTTTTGGT-TTGTGAATCAAAATCCT
130 CATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTTGGTCTT-TGAATTAAAA-CTT
* * * * * * *
33363484 ATTTACGTGATAATT-TTTATCCCTTGATTCTAGGACGAGCTTACGAACTTGTCAAACTTTTACG
192 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCAACTTGTCAAACTTTTACG
* * * * ** * * * *
33363548 CA-TTCTTCTATAACTTCGATTCCATATAGTATTCAAGACGATCCATTTCTTCCAACAATGTTCC
256 -AGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTC
* * *
33363612 AAACATTCCATCCTCGGTAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTT
320 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTTCATTTTGTAAACAAGTT
* * *
33363677 TTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT-TCTC
384 TTGGT-TTTGAATTAAAAACTTATTTACGTGAGAATTTTTATC-C
* * * *
33363721 TTTGGGTTCTTGGACGAACTTCC-AAGCTTGTCAAACTTTTACGAGTTCTTTGATAATTTTGGTT
1 CTT-GGTTCTTGGACGAAC-TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * *
33363785 CCTTAAAACATTCAAGACAATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTC-GAGAAA
63 CCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAAATTTTCAAACATTCCATGCTCGGA-AAA
** *
33363849 TCGCATCATTTCAT-TGAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAGAAC
127 TCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA-AAC
** * * *
33363913 TTATTTAAATGAGAATAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTGTTA
190 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTA
*
33363978 CGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCTTCCAGCAA-TTTT
254 CGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTT
* * *** * * * *
33364042 CTAAACATTCCATGCTCTGG-AATTATATCATTAGGTTTAAGTTGTTTTCCATTTTGTAAACAAG
319 C-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT-CATTTTGTAAACAAG
* *
33364106 TTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCC
382 TTTTGGTTT-TGAATTAAAAACTTATTTACGTGAGAATTTTTATCC
* * * ** * *
33364152 CTCGATTCTAGGACGAACTTATGAACTTGTCAAACTTTTACGCGATTC-CTTAT-A-----G---
1 CTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTC
* * * *
33364207 --T-----ATTCAAGATGATCCATTCCTTCCAAC-AATGTTCCAAACATTCCATCCTC-GAGAAA
64 CTTAAAACATTCAAGACGATCCATTCCTTCCAGCAAAT-TTTCAAACATTCCATGCTCGGA-AAA
* * * *
33364263 TCGCATCATTTGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCA
127 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-CT
* * * *
33364328 TATATACGTGAGAATTGTTTCTCT-TTGGGTTCCTGGACAAATTTCCAAACTTGTCAAACTTTTA
191 TATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTA
* **
33364392 CGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTT
254 CGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTT
* * ** * *
33364457 TGAACATTCCATGCTCGGGAAATTGCATCATTTCATCGAAATAGTTTGTCATCTTGTAAACAAGT
319 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAAGT
* ** *
33364522 TTTGGTGTTTGAATTACAAACTTATTTACGTGAGAATAGTT-TCT
383 TTTGGT-TTTGAATTAAAAACTTATTTACGTGAGAATTTTTATCC
* *
33364566 CTGTTGTTACTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
1 CT-TGGTT-CTTGGACGAAC-TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* ** * * *
33364631 CCTTAGAACATTCAAGACGATCCATTCCTTCCAAAAAATTTTTAAACATTCCATGCTTGGGAAAT
63 CCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAAATTTTCAAACATTCCATGCTCGGAAAAT
* * * * *
33364696 TGCATCATTTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTTGT-TTGTGAATTAAAATC
128 CGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTTGGTCTT-TGAATTAAAA-C
* * * * ** * *
33364759 CTATTTCCGTGAGAATT-TTTATCCCTTAATTCTAGGACGAACTTACGAACTTGTCAAACTTTTA
190 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCAACTTGTCAAACTTTTA
* * * *** * * * *
33364823 CGCA-TTTTTTTATAACTTCGATTCCTTATAGTTTTCAAGATGA-CCAATTTCTTCCAACAATGT
254 CG-AGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCC-ATTCCTTCCAGCAATTT
* * * * * * **
33364886 TCCAAACATCCCATCCTCGGGAAACCACATCATTTACTCTAAATAGTTTGTCATTTTGTAAACAA
317 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAA
* * * * * *
33364951 GTTTTGTTCTTTGAATAAAAAACTTATATACGT-AAAAGTTGTTTCTCT
381 GTTTTGGT-TTTGAATTAAAAACTTATTTACGTGAGAA-TT-TTTATCC
* * * *
33364999 CTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTGC
1 CTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * *
33365064 TTAAAACATTCAAGACGATCCATTCCTTCTAGC-AATTTTCCAAACATTTCATGCTCGGGAAATC
65 TTAAAACATTCAAGACGATCCATTCCTTCCAGCAAATTTT-CAAACATTCCATGCTCGGAAAATC
33365128 GCATCATTT
129 GCATCATTT
33365137 CATCGAAATT
Statistics
Matches: 2994, Mismatches: 473, Indels: 212
0.81 0.13 0.06
Matches are distributed among these distances:
413 6 0.00
414 227 0.08
415 75 0.03
416 39 0.01
417 1 0.00
419 1 0.00
422 1 0.00
424 1 0.00
427 1 0.00
428 2 0.00
429 317 0.11
430 243 0.08
431 1117 0.37
432 591 0.20
433 164 0.05
434 100 0.03
435 106 0.04
436 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (426 bp):
CTTGGTTCTTGGACGAACTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
TAAAACATTCAAGACGATCCATTCCTTCCAGCAAATTTTCAAACATTCCATGCTCGGAAAATCGC
ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAACTTATTT
ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAACTTTTACGAGTTC
TTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACAT
TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTCATTTTGTAAACAAGTTTTGGTTT
TGAATTAAAAACTTATTTACGTGAGAATTTTTATCC
Found at i:33362972 original size:647 final size:647
Alignment explanation
Indices: 33361129--33365145 Score: 5861
Period size: 647 Copynumber: 6.2 Consensus size: 647
33361119 TATCATTATG
* * * * * * * *
33361129 TCTCTCTTGGTTCTAGGATGAACTTTCAAACTAGTCAAACTTCTACGAGTTCTTTTACAGCTTTG
1 TCTCTCTAGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * ** * *
33361194 TTTCCTTACAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTC-GAG
66 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGA-
** * ** *
33361258 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTATTCTTTGAATTAAAA
130 AAATCGCATCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTACAA
* * * **
33361323 ATTTATATACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAACTTT
195 ACTTATTTACGTGAGAATAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTT
* ** * * * *
33361388 TACAAGTTCTTTTATAACTTTAGTTCCTTAAAACATTCAAGATGATCTATTCCTTCTAGTAATTT
260 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTT
33361453 TTCGAACATTCCATGCTCGGGAAATTGCATC-TTTGGTCTAAGTAGTTTTCCATTTTGTAAACAA
325 TTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACAA
*
33361517 G-TTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTAATTCTAGGACGAAC
390 GTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAAC
33361581 TTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACGA
455 TTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACGA
* *
33361646 TCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCTGGAAATCGCATCATTTGGTCTAAATA
520 TCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGGGAAATCGCATCATTTGATCTAAATA
33361711 GTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
585 GTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
* * * * * *
33361774 TCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAATTTTTATGAGTTCTTTTATAACTTCA
1 TCTCTCTAGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
33361839 GTTCCTTAAAACATTCAAGACAATCTATTCCTTCCATCAATTTTTCGAACATTCCAAGCTCGGGA
66 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGAA
* * *
33361904 AATCGCATCATTTCATCATCGAAATAGTTTGACATTTTGTAAACAAGTTTTGGACCTTGAATTAC
131 AATCGCATCA-TT--TCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAC
* * * *
33361969 AAACTTATTTATGTGAGAATAGTTTCTCTCTTGTTTCTTGGACAAACTTCCAAAGTAGTCAAACT
193 AAACTTATTTACGTGAGAATAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACT
33362034 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAAT
258 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAAT
*
33362099 TTTTCGAACATTCCATGCTC-GGAAATTGCATCATTTCGTCTAAGTAGTTTTCCATTTTGTAAAC
323 TTTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAAC
33362163 AAGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGA
388 AAGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGA
* * * *
33362228 ACTTACGAACTTGTTAAACTTTTACACGTTCTTTTATAACTTCGATTCCTTATATTATTCAAGAT
453 ACTTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGAC
* *
33362293 GATCCATTCCTTCCAACAATGTTCCTAACATTCCTTCCTCGGGAAATCGCATCATTTGATCTAAA
518 GATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGGGAAATCGCATCATTTGATCTAAA
*
33362358 TAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTCTATACGTGAGAATTGTT
583 TAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
** * * *
33362423 TCAGTCTAGGTTCTTGGATGAACTTTCAAACTTGTCAAACTTTTACTAGTTATTTTATAACTTCG
1 TCTCTCTAGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * *
33362488 GTTCCTTACAACATTCAAGACGATCCATTCCTTCGAGCAAATTTTCGAACATTCCATGCTCAGGA
66 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTC-GGA
* *
33362553 AAAT-GAATCATTTCATCGAAATAGTTTGTCATTTTGTAAAGAAGTTTTGGTCTTTGAATTACAA
130 AAATCGCATCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTACAA
* * * ** *
33362617 ACTTATTTACATGAGAATAGTTTCTCTCTTATTTGTTAAAAGAACTTCC-AACTTGTCAAACTTT
195 ACTTATTTACGTGAGAATAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTT
* * *
33362681 TACGAGTTCTTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGTTCCATTCGTTCCAGGAATT
260 TACGAGTTC-TTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATT
* *
33362746 TTTCGAACATTCCATGCTGGGGAAATTGCATCATTTTGTCTAAGTAGTTTTCCATTTTGTAAACA
324 TTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACA
33362811 AGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAA
389 AGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAA
* * * *
33362876 CTCACGAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTCGATTCCTTATAGTATTGAGGACG
454 CTTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACG
*
33362941 ATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATCGCATCATTTGATCTAAAT
519 ATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGGGAAATCGCATCATTTGATCTAAAT
33363006 AGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
584 AGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
* *
33363070 TCTCTCTTGGTTCTTGGACGAACTTT-AGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTC
1 TCTCTCTAGGTTCTTGGACGAACTTTCA-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * *
33363134 AGTTCCTTCAAACATTCAAGACGATCTATTCCTTCCAGCAATTTTTCGAACATTCCATGCTC-GA
65 GGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGA
* * ** ** *
33363198 CAAATGGCAGCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA
130 -AAATCGCATCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTACA
* * * * *
33363263 AACTTATATAGGTGAGAATTA-TTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
194 AACTTATTTACGTGAGAA-TAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACT
** * * * * *
33363327 TTTAAAAATTCTTTTATAACTTCGATTCTTTAAACCATTCAAGACGATCCATTCCTTCCAGTAAT
258 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAAT
* * *
33363392 TTTTCGAACATTTCATGCTCGGGAAATTGTACCATTTGGTCTAAGTAGTTTTCCATTTTGTAAAC
323 TTTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAAC
* * *
33363457 AGGTTTTGGTTTGTGAATCAAAATCCTATTTACGTGATAATTTTTATCCCTTGATTCTAGGACGA
388 AAGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGA
* * * *
33363522 GCTTACGAACTTGTCAAACTTTTACGCATTCTTCTATAACTTCGATTCCATATAGTATTCAAGAC
453 ACTTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGAC
* * *
33363587 GATCCATTTCTTCCAACAATGTTCCAAACATTCCATCCTCGGTAAATCGCATCATTTGGTCTAAA
518 GATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGGGAAATCGCATCATTTGATCTAAA
*
33363652 TAGTTTTTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
583 TAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
* * * * * * *
33363717 TCTCTTTGGGTTCTTGGACGAACTTCCAAGCTTGTCAAACTTTTACGAGTTCTTTGATAATTTTG
1 TCTCTCTAGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* *
33363782 GTTCCTTAAAACATTCAAGACAATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTC-GAG
66 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGA-
* *
33363846 AAATCGCATCATTTCATTGAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AG
130 AAATCGCATCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTACA-
** *
33363910 AACTTATTTAAATGAGAATAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTG
194 AACTTATTTACGTGAGAATAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTT
*
33363975 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATTCCTTCCAGCAA-T
259 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATT
* * ** * * *
33364039 TTTCTAAACATTCCATGCTCTGG-AATTATATCATTAGGTTTAAGTTGTTTTCCATTTTGTAAAC
324 TTTC-GAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAAC
*
33364103 AAGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTCGATTCTAGGACGA
388 AAGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGA
* *
33364168 ACTTATGAACTTGTCAAACTTTTA--CG--------------CGATTCCTTATAGTATTCAAGAT
453 ACTTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGAC
* * *
33364217 GATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATCGCATCATTTGGTCCAAA
518 GATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGGGAAATCGCATCATTTGATCTAAA
* * *
33364282 TAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACGTGAGAATTGTT
583 TAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
* * * *
33364347 TCTCTTTGGGTTCCTGGAC-AAATTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
1 TCTCTCTAGGTTCTTGGACGAACTTT-CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* ** * *
33364411 GGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTTTGAACATTCCATGCTCGGG
65 GGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGA
* * *
33364476 AAATTGCATCATTTCATCGAAATAGTTTGTCATCTTGTAAACAAGTTTTGGTGTTTGAATTACAA
130 AAATCGCATCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTACAA
* *
33364541 ACTTATTTACGTGAGAATAGTTTCTCTGTTGTTACTTGGACGAACTTCCAAACTTGTCAAACTTT
195 ACTTATTTACGTGAGAATAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTT
* **
33364606 TACGAGTTCTTTTATAACTTCGGTTCCTTAGAACATTCAAGACGATCCATTCCTTCCAAAAAATT
260 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCC-AGCAATT
* * * *
33364671 TTT-AAACATTCCATGCTTGGGAAATTGCATCATTTGGTCCAAGTAGTTTTCCATTTTTTAAACA
324 TTTCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACA
* * *
33364735 AGTTTTTGTTTGTGAATTAAAATCCTATTTCCGTGAGAATTTTTATCCCTTAATTCTAGGACGAA
389 AGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAA
* * * *
33364800 CTTACGAACTTGTCAAACTTTTACGCATTTTTTTATAACTTCGATTCCTTATAGTTTTCAAGATG
454 CTTACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACG
* * * *
33364865 A-CCAATTTCTTCCAACAATGTTCCAAACATCCCATCCTCGGGAAACCACATCATTT-ACTCTAA
519 ATCC-ATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGGGAAATCGCATCATTTGA-TCTAA
* *
33364928 ATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATAAAAAACTTATATACGT-AAAAGTTG
582 ATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAA-TTG
33364992 TT
646 TT
* *
33364994 TCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCA
1 TCTCTCTAGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * *
33365059 GTTGCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGCTCGGGA
66 GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGAA
33365124 AATCGCATCATTTCATCGAAAT
131 AATCGCATCATTTCATCGAAAT
33365146 TAATTTACGT
Statistics
Matches: 3031, Mismatches: 297, Indels: 86
0.89 0.09 0.03
Matches are distributed among these distances:
629 4 0.00
630 443 0.15
631 123 0.04
632 4 0.00
633 1 0.00
644 1 0.00
645 139 0.05
646 299 0.10
647 1413 0.47
648 239 0.08
649 359 0.12
650 6 0.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (647 bp):
TCTCTCTAGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
GTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGAA
AATCGCATCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTACAAA
CTTATTTACGTGAGAATAGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTT
TCGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAG
TTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAACT
TACGAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACGAT
CCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGGGAAATCGCATCATTTGATCTAAATAG
TTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTT
Found at i:33365282 original size:172 final size:172
Alignment explanation
Indices: 33364991--33365304 Score: 497
Period size: 172 Copynumber: 1.8 Consensus size: 172
33364981 CGTAAAAGTT
* *
33364991 GTTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
1 GTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * *
33365056 TCAGTTGCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGCTCG
66 TCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTCCATGCTCA
33365121 GGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
131 GGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
* *
33365163 GTTTCTCTCT-TGTCTCTTGGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
1 GTTTCTCTCTAGGT-TCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
33365227 TTCGGTTCCTTAAAACATTCAAGACGTTCCATTCCTTCTAGTC-ATTTTTCAAACATTCCATGCT
65 TTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAG-CAATTTTCCAAACATTCCATGCT
*
33365291 CAGGAAATTGCATC
129 CAGGAAATCGCATC
33365305 TTTTGGTCTA
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
171 2 0.02
172 126 0.98
173 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (172 bp):
GTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
TCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTCCATGCTCA
GGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
Found at i:33365895 original size:804 final size:804
Alignment explanation
Indices: 33363529--33372109 Score: 2862
Period size: 804 Copynumber: 10.3 Consensus size: 804
33363519 CGAGCTTACG
* * * * **
33363529 AACTTGTCAAACTTTTACGCA-TTCTTCTATAACTTCGATTCCATATAGTATTCAAGACGATCCA
1 AACTTGTCAAACTTTTACG-AGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCA
* * * * * * * *
33363593 TTTCTTCCA-ACAATGTTCCAAACATTCCATCCTCGGTAAATCGCATCATTTGGTCTAAATAGTT
65 TTCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTT
* * *
33363657 TTTCATTTTGTAAACAAGTTTT-GTTCTTTGAATTAAAAACTTATATACGTGAGAATTGTTTCTC
130 TGTCATTTTGTAAACAAGTTTTGGTT-TGTGAATT-AAAACTTATTTACGTGAGAATT-TTTCTC
* * *
33363721 T-TTGGGTTCTTGGACGAACTT-CCAAGCTTGTCAAACTTTTACGAGTTCTTTGATAATTTTGGT
192 TCTT-GATTCTTGGACGAACTTACGAA-CTTGTCAAACTTTTAC--G--C---G---A--TT--C
* ** * * * * * * *
33363784 TCCTTAAAACATTCAAGACAATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGAGAAA
241 T-CTTATAGTATTCAAGACGATCCATTCCTTCCAACAATGTTTCAAACATTCCATCCTCGGGAAA
* ** ** * *
33363849 TCGCATCATTTCATTGAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAGAA-C
305 TTGCATCATTTGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAA-AATC
* * * * * * * * *
33363913 TTATTTAAATGAGAATAGTTTCTCTCTTG-TTTCTTGGACGAACTTCCAAACTTGTCAAACTGTT
369 ATATATACATGAGAATTGTTTCTCT-TTGAGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTT
* * **
33363977 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCC-ATTCCTTCCAGCAA-TT
433 ACGAGTTCTTTTATAACTTCGATTCCTTAAAACATTCAAGACGA-CCAATTCCTTCTGGCAATTT
* * *** * *
33364040 TTCTAAACATTCCATGCTCTGG-AATTATATCA-TTA--GGTTTAAGTTGTTTTCCATTTTGTAA
497 TTC-AAACATTCCATGCTCGGGAAATTACATCATTTATCGAAATAA-TT-TGTT--ATCTTGTAA
* * * * ** * * *
33364101 ACAAGTTTTGGT-TTGTGAATTA-AAATCCTATTTACGTGAGAAT-TTTTATCCCTCGATTCTAG
557 ACAAGTTTTGGTGTT-TGAATTACAAA-CTTATATACGTGAGAATAGTTTCTCTATAGTTTCTTG
*** * *
33364163 GACGAACTTATGAACTTGTCAAACTTTTACGCGATTCCTTATAGTATTCAAGATGATCCA-TTCC
620 GACGAACTTCCAAACTTGTCAAACTTTTACGAG-TT-CTT-T--TA-T-AA-CT--T-CAGTTCC
** * *
33364227 TTCCAACAATGTTCCAA-AC-ATTCCA-TCC-TCGAGAAATCGCATCATTTGGTCCAAATAGTTT
674 TT--AA-AACATT-CAAGACGA-TCCATTCCTTC------TAGCA--ATTT--TCCAAACA-TTT
** * ** ** * ** * * *
33364288 -AT-CATTTTGTAAACAAGTTTTGTTC-TTTGAATTAAAATCATATATACGTGAGAATTGTTTCT
723 CATGC--TCGGGAAA-TTGCA----TCATTT-CATCGAAATTA-ATTTACGTGAGAATAGTTTCT
* * * * *
33364350 CTTTGGGT-TCCTGGACAAATTTCCA
779 CTCTGTGTCTCTTGGACGAACTTCCA
*
33364375 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCAAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCAT
** ** *
33364440 TCCTTCT-GGCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATTTCATCGAAATAGTTT
66 TCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
* *
33364504 GTCATCTTGTAAACAAGTTTTGGTGTT-TGAATTACAAACTTATTTACGTGAGAATAGTTTCTCT
131 GTCATTTTGTAAACAAGTTTTGGT-TTGTGAATTA-AAACTTATTTACGTGAGAAT-TTTTCTCT
* * * * *
33364568 GTTG-TTACTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTT
193 CTTGATT-CTTGGACGAACTTACGAACTTGTCAAACTTTTACGCGATTCTCTTAT-A-----G--
* * * *
33364631 CCTTAGAACATTCAAGACGATCCATTCCTTCCAAAAAAT-TTTTAAACATTCCATGCTTGGGAAA
249 ---T-----ATTCAAGACGATCCATTCCTTCC-AACAATGTTTCAAACATTCCATCCTCGGGAAA
* * *
33364695 TTGCATCATTTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTTGTT-TGTGAATTAAAAT
305 TTGCATCATTTGGTCCAAATAGTTTAT-CATTTTGTAAACAAG-TTTTGTTCTTTGAATTAAAAT
* * * * * * * * *
33364758 CCTATTTCCGTGAGAATT-TTTATCCCTT-AATT-CTAGGACGAACTTACGAACTTGTCAAACTT
368 CATATATACATGAGAATTGTTTCT-CTTTGAGTTCCT-GGACAAACTTCCGAACTTGTCAAACTT
* * *** * * ***
33364820 TTACGCA-TTTTTTTATAACTTCGATTCCTTATAGTTTTCAAGATGACCAATTTCTTCCAACAAT
431 TTACG-AGTTCTTTTATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCTGGCAAT
* * * * ** * * * *
33364884 GTTCCAAACATCCCATCCTCGGGAAACCACATCATTTACTCTAAATAGTTTGTCATTTTGTAAAC
495 TTTTCAAACATTCCATGCTCGGGAAATTACATCATTTA-TCGAAATAATTTGTTATCTTGTAAAC
* * * * * * * *
33364949 AAGTTTTGTTCTTTGAATAAAAAACTTATATACGT-AAAAGTTGTTTCTCTCTAGGTTCTTGGAC
559 AAGTTTTGGTGTTTGAATTACAAACTTATATACGTGAGAA-TAGTTTCTCTATAGTTTCTTGGAC
* * *
33365013 GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTGCTTAAAACATTCAAG
623 GAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAACATTCAAG
*
33365078 ACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGCTCGGGAAATCGCATCATTTCATCGA
688 ACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGCTCGGGAAATTGCATCATTTCATCGA
*
33365143 AATTAATTTACGTGAGAATAGTTTCTCTCT-TGTCTCTTGGATGAACTTCCA
753 AATTAATTTACGTGAGAATAGTTTCTCTCTGTGTCTCTTGGACGAACTTCCA
*
33365194 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGTTCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCAT
* * * *
33365259 TCCTTCTAGTC-ATTTTTCAAACATTCCATGCTCAGGAAATTGCATCTTTTGGTCTAAGTAGTTT
66 TCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
* * * *
33365323 -TCCATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGTGAATTTTTATCCC
131 GT-CATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAA-CTTATTTACGTGAGAATTTTTCTCTC
* *
33365387 TTGATTCTAGGATGAACTTACGAACTTGTCAAACTTTTACGCGATTC-CTTATAGTATTCAAGAC
194 TTGATTCTTGGACGAACTTACGAACTTGTCAAACTTTTACGCGATTCTCTTATAGTATTCAAGAC
* *
33365451 GATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATTGCATCATTTGGTCCAAA
259 GATCCATTCCTTCCAACAATGTTTCAAACATTCCATCCTCGGGAAATTGCATCATTTGGTCCAAA
33365516 TAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATGAGAATTGTT
324 TAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATGAGAATTGTT
*
33365581 TCTCTTTGGGGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
389 TCTCTTT-GAGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * *
33365646 GGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTTCGAACATTCCATGCTCGGG
453 GATTCCTTAAAACATTCAAGACGACCAATTCCTTCTGGCAATTTTTCAAACATTCCATGCTCGGG
*
33365711 AAATTGCATCATTTCATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTTGAATTACAA
518 AAATTACATCATTT-ATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTTGAATTACAA
* *
33365776 ACTTATTTACGTGAGAATAGTTTCTCTATTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTT
582 ACTTATATACGTGAGAATAGTTTCTCTATAGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTT
* * * *
33365841 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACAATCCATTCCTTCCAGTAATTT
647 TACGAGTTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAA-TT
** * ** * *
33365906 TTTGAAA-ATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAGTAGTTTTCCATTTTTTAAACA
711 TTCCAAACATTTCATGCTCGGGAAATTGCATCATTTCATCGAA--A---TT--A--ATTT--AC-
* * * * * * *
33365970 AGTTTTTGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTAATTCTAGGACGAA
764 -------G--TGAGAA-T---A----GTTT-C-T----CTCTGTGT--C-----TCTTGGACGAA
* *
33366035 CTTACG
799 CTTCCA
* * * * *** * *
33366041 AACTTGTCAAACTTTTACGCGTTTTTTTATAACTTCGATTCCTTATAGTTTTGAAGATGA-CCAA
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCC-A
* * * * * * * *** *
33366105 TTTCTTCCA-ACAATGTTCCAAACATTCCATCCTCGAGAAACCACATAATTTGGTCTAAATAGTT
65 TTCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTT
* * * *
33366169 TGTCATTTTGTAAACAAGTTTT-GTTATGTGAATAAAAAACTTATATACGTAAGAGTTGTTTCTC
130 TGTCATTTTGTAAACAAGTTTTGGTT-TGTGAAT-TAAAACTTATTTACGTGAGAATT-TTTCTC
* * *
33366233 TCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTGTAACTTCAGTTG
192 TCTTGATTCTTGGACGAACTTACGAACTTGTCAAACTTTTAC--G--C----G--A-TTC---T-
* ** * * * *
33366298 CTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTTCAAACATTTCATGCCT-GGGAAAT
242 CTTATAGTATTCAAGACGATCCATTCCTTCCAACAATGTTTCAAACATTCCAT-CCTCGGGAAAT
* ** * * * * * ** ***
33366362 CGCATCATTTCATCGAAATTAATTTA-C---GTG-AGAA-TAG-TTT-CTCTCTTGTCTCTTGGA
306 TGCATCATTTGGTCCAAA-TAGTTTATCATTTTGTA-AACAAGTTTTGTTCT-TTGAAT-TAAAA
* * ** * ** * * ** * *
33366419 -CGA-ACT-TCCA--A-ACTTGTCAAACT-TTTACGAGTTCTTTTA-TAACTTCGGTTCCT-TAA
367 TC-ATA-TATACATGAGAATTGT--TTCTCTTT--GAGTTCCTGGACAAACTTCCGAACTTGTCA
* * * * * * * * * ***
33366475 AACATTCAAGACGTTCCATTCCTTCT-A-GTC-ATT-TTTCAAACATTCCATGCTCGGGAAATTG
426 AACTTTTACGA-GTT-C-TT--TTATAACTTCGATTCCTTAAAACATT-CAAG-ACGACCAATT-
* * *** * * * * * *
33366536 CATCTTTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAATCCTAT
483 C--CTTCTGG-C-AA-T--TTTTCAAACAT-T--CCATG-CTCGG---G-AAATT-ACAT-C-AT
** * * * * *
33366601 TTA-CG-TGTGAATTT-TTATCCCTTG------A-TTCTAG-G-ATGAACTTACGAACTTGTCA-
530 TTATCGAAAT-AATTTGTTAT--CTTGTAAACAAGTTTTGGTGTTTGAA-TTACAAACTTAT-AT
* *** * * ** ** * *
33366653 ACCTTTTACA-CGATTC-CTTATAGTATTC-AAGACG-A--TCCATTCCT-TCCAAC----A--A
590 ACGTGAGA-ATAGTTTCTC-TATAGT-TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
* * * *** * * ** *
33366705 TGTTC---CA-AACATTCCA--TCCTCGAGAA-ATTGCATCATTTGGTCCAAATAGTT-TATC-A
652 -GTTCTTTTATAAC-TT-CAGTTCCT-TAAAACATT-CA--AGACGATCC-ATTCCTTCTAGCAA
** * * * * *
33366761 TTTTGTAAACAAGTTT--TGTTC-----TTTG-A--A-TT-A---AAATCATATATACATGAGAA
709 TTTTCCAAAC-A-TTTCATGCTCGGGAAATTGCATCATTTCATCGAAATTA-ATTTACGTGAGAA
* * * * * *
33366811 TTGTTTCTCTTTGGGGT-TCCTGGACAAACTTCCG
771 TAGTTTCTCTCT-GTGTCTCTTGGACGAACTTCCA
*
33366845 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCAAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCAT
* * ** * *
33366910 TCCTTCT-GGCAATTTTTCGAACATTTCATGCTCGGGAAATTGCATCATTTCATCGAAATAATTT
66 TCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
* * *
33366974 GTTATCTTGTAAACAAGTTTTGGTGTT-TGAATTACAAACTTATTTACGTGAGAATAGTTTCTCT
131 GTCATTTTGTAAACAAGTTTTGGT-TTGTGAATTA-AAACTTATTTACGTGAGAAT-TTTTCTCT
* * * * * *
33367038 ATTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTC
193 CTTGATTCTTGGACGAACTTACGAACTTGTCAAACTTTTACGCGATTCTCTTAT-A-----G---
** * * *
33367102 CTTAAAACATTCAAGACGATCCATTCCTTCCAGTAATTTTTTGAAA-ATTCCATGCTCGGGAAAT
249 --T-----ATTCAAGACGATCCATTCCTTCCAACAA-TGTTTCAAACATTCCATCCTCGGGAAAT
* * * *
33367166 TGCATCATTTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTGTT-TGTGAATTAAAATCC
306 TGCATCATTTGGTCCAAATAGTTTAT-CATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCA
* * * * * *
33367229 TATTTACGA-GAGAATT-TTTATCCCTT-AATT-CTAGGACGAACTTACGAACTTGTCAAACTTT
370 TATATAC-ATGAGAATTGTTTCT-CTTTGAGTTCCT-GGACAAACTTCCGAACTTGTCAAACTTT
* * * *** * * * *** *
33367290 TACGCGTTTTTTTATAACTTCGATTCCTTATAGTTTTGAAGATGACCAATTTCTTCCAACAATGT
432 TACGAGTTCTTTTATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCTGGCAATTT
* * ** * * * * * *
33367355 TCCAAACATTCCATCCTCGGGAAACCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
497 TTCAAACATTCCATGCTCGGGAAATTACATCATTT-ATCGAAATAATTTGTTATCTTGTAAACAA
* * * * * * * * *
33367420 GTTTTGTTATTTGAATAAAAAACTTATATACGTAAGAGTTGTTTCTCTCTAGGTTCTTGGACGAA
561 GTTTTGGTGTTTGAATTACAAACTTATATACGTGAGAATAGTTTCTCTATAGTTTCTTGGACGAA
* * * *
33367485 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTGTAACTTCAGTTGCTTAAAACATTCAAGACG
626 CTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACG
*
33367550 ATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGC-CTGGGAAATCGCATCATTTCATCGAAA
691 ATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGCTC-GGGAAATTGCATCATTTCATCGAAA
33367614 TTAATTTACGTGAGAATAGTTTCTCTCT-TGTCTCTTGGACGAACTTCCA
755 TTAATTTACGTGAGAATAGTTTCTCTCTGTGTCTCTTGGACGAACTTCCA
*
33367663 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGTTCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCAT
* * *
33367728 TCCTTCTAGTC-ATTTTTCAAACATTCCATGCTCGGGAAATTGCATCTTTTGGTCTAAGTAGTTT
66 TCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
* * * *
33367792 -TCCATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGTGAATTTTTATCCC
131 GT-CATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAA-CTTATTTACGTGAGAATTTTTCTCTC
* * *
33367856 TTGATTCTAGGATGAACTTACGAACTTGTCAAACTTTTACGCGATTC-CTTATAGTATTCAAGAT
194 TTGATTCTTGGACGAACTTACGAACTTGTCAAACTTTTACGCGATTCTCTTATAGTATTCAAGAC
* *
33367920 GATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATTGCATCATTTGGTCCAAA
259 GATCCATTCCTTCCAACAATGTTTCAAACATTCCATCCTCGGGAAATTGCATCATTTGGTCCAAA
33367985 TAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATGAGAATTGTT
324 TAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATGAGAATTGTT
* *
33368050 TCTCTTTGGGGTTCCTAGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
389 TCTCTTT-GAGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * *
33368115 GGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTTCGAACATTCCATGCTCGGG
453 GATTCCTTAAAACATTCAAGACGACCAATTCCTTCTGGCAATTTTTCAAACATTCCATGCTCGGG
* *
33368180 AAATTGCATCATTTCATCGAAATAATTTGTTATCTTGCAAACAAGTTTTGGTGTTTGAATTACAA
518 AAATTACATCATTT-ATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTTGAATTACAA
* *
33368245 ACTTATTTACGTGAGAATAGTTTCTCTATTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTT
582 ACTTATATACGTGAGAATAGTTTCTCTATAGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTT
* * *
33368310 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGTAATTT
647 TACGAGTTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAA-TT
** * ** * *
33368375 TTTGAAA-ATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAGTAGTTTTCCATTTTTTAAACA
711 TTCCAAACATTTCATGCTCGGGAAATTGCATCATTTCATCGAA--A---TT--A--ATTT--AC-
* * * * * * *
33368439 AGTTTTTGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTAATTCTAGGACGAA
764 -------G--TGAGAA-T---A----GTTT-C-T----CTCTGTGT--C-----TCTTGGACGAA
* *
33368504 CTTACG
799 CTTCCA
* * * * *** * *
33368510 AACTTGTCAAACTTTTACGCGTTTTTTTATAACTTCGATTCCTTATAGTTTTGAAGATGA-CCAA
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCC-A
* * * * * * *** *
33368574 TTTCTTCCA-ACAATGTTCCAAACATTCCATCCTCGGGAAACCACATAATTTGGTCTAAATAGTT
65 TTCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTT
* * * * * *
33368638 TGTCATTTTGTAAACAAGTTTT-ATTATTTGAATAAAAAACTTATATACGTAAGAGTTGTTTCTC
130 TGTCATTTTGTAAACAAGTTTTGGTT-TGTGAAT-TAAAACTTATTTACGTGAGAATT-TTTCTC
* * *
33368702 TCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTGTAACTTCAGTTG
192 TCTTGATTCTTGGACGAACTTACGAACTTGTCAAACTTTTAC--G--C----G--A-TTC---T-
* ** * * *
33368767 CTTAAAACATTCAAGACGATCCATTCCTTCTAGCAAT-TTTCCAAACATTTCATGCCT-GGGAAA
242 CTTATAGTATTCAAGACGATCCATTCCTTCCAACAATGTTT-CAAACATTCCAT-CCTCGGGAAA
* ** * * * * * * *
33368830 TCGCATCATTTCATCGAAATTAATTTA-C---GTG-AGAA-TAGTTTCTCTCTTGTCTCTTGGAC
305 TTGCATCATTTGGTCCAAA-TAGTTTATCATTTTGTA-AACAAG-TT-T-T-GT-TCT-TTGAAT
* ** * * ** ** * * ** * * ** * *
33368889 GAACTTC-CA-A-ACTTGTCAAACGTTT-AC---GAGTTCTTTTA-TAACTTCGGTTCCT-TAAA
362 TAAAATCATATATACATGAGAATTGTTTCTCTTTGAGTTCCTGGACAAACTTCCGAACTTGTCAA
* * * * ** * * * * *
33368945 ACATTCAAGACGTTC---CATTCCTTCTAGTCATT-----TTTC-A-A--A-C-ATTCCATGCTC
427 ACTTTTACGA-GTTCTTTTATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCC-TTCT-
* * * * * *
33368996 GGGAA---TT---GCA-TGCAT-CT-------TT---TGC---TAT--AAGTAGTTT-TTCATTT
489 GGCAATTTTTCAAACATTCCATGCTCGGGAAATTACAT-CATTTATCGAAATAATTTGTT-ATCT
* * * ** * *
33369037 TGTAAACAAGTTTTGGT-TTGTGAATTA-AAATCCTATTTACGTGTGAATTTTTATCCCT-T-GA
552 TGTAAACAAGTTTTGGTGTT-TGAATTACAAA-CTTATATACGTGAGAATAGTT-TCTCTATAGT
* * * *
33369098 TTCTAGGACGAACTTACAAACTTGTCAAACTTTTACGCGTTCTTTTATAACTTC-GATTCCTTAT
614 TTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAA
** * * * * * * *
33369162 AGTATTCAAGAGGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCCGGAAATTGCATC
678 AACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGCTCGGGAAATTGCATC
** * * * * * * *
33369227 ATTTGGTCTACATAGTTTGTCATTT-TGT-A-AACAAGTTT-TGTTCTTTGAATTAAAAACTTAT
743 ATTTCATCGA-A-A---T-TAATTTACGTGAGAA-TAGTTTCT-CTCTGTG---T-----C-TCT
* * *
33369288 ATACGTGA-GAATTGTTTCT
791 -T--G-GACGAA--CTTCCA
** ** * * * *
33369307 CTCTTGGTTCTTGGACGAAC-TTT-C-A-AACTTGTAAAACTTTTACGAGTTCATTTATAAC-TT
1 AACTT-G-TC----A--AACTTTTACGAGTTCTTTTATAAC--TT-CG-GTTC-CTTAAAACATT
* * ** ** * ** * * * *
33369367 -TAGTTCCTTAAAATATTTAAC-ACGATCCATTCCTTCCAGCAATTTTTCGAACATTGCATGCTC
53 CAAG-ACGATCCATTCCTT--CTA-G-GCAAT-------------TTTTCAAACATTCCATGCTC
** *
33369430 GACAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT-TGAATT
100 GGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-TTGTGAATT
* * * *
33369494 AAAAACTTATATAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTA-GAACTTGTCAA
164 -AAAACTTATTTACGTGAGAATT-TTTCTCTCTTGATTCTTGGACGAAC-TTACGAACTTGTCAA
* * ** *
33369558 ACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGATGATCCATTCCTT-CAAG
226 ACTTTTAC--G--C------GA-TTC---T-CTTATAGTATTCAAGACGATCCATTCCTTCCAA-
* * * * * *
33369622 CAATTTTTCGAACATTCCATGCTTGGGAAATTGCATCATTTGGTCTAAGTAGTTT-TCCATTTTG
275 CAATGTTTCAAACATTCCATCCTCGGGAAATTGCATCATTTGGTCCAAATAGTTTAT-CATTTTG
* * * * * * *
33369686 TAAACAAGTTTTGGTT-TGTGAATTAAAATCCTATTTACGTGAGAATT-TTTATCCCTT-AATT-
339 TAAACAAGTTTT-GTTCTTTGAATTAAAATCATATATACATGAGAATTGTTTCT-CTTTGAGTTC
* ** * * ***
33369747 CTAGGACGAACTTATGAACTTGTCAAACTTTTAC-ACATTCTTTTATAAGTTCGATTCCTTATTG
402 CT-GGACAAACTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGATTCCTTAAAA
* * *** * * * **
33369811 TATTCAAGACGATCC-ATTTCTTCCAACAA-TGTTCGAAACATTCCATCCTCGGGAGATCGCATC
465 CATTCAAGACGA-CCAATTCCTTCTGGCAATTTTTC-AAACATTCCATGCTCGGGAAATTACATC
* * * * * * * * *
33369874 ATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGTTCTTTGAATTAAAAACTTATATAC
528 ATTT-ATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTTGAATTACAAACTTATATAC
* * * * * * * * *
33369939 GTGAGAGTTGTTTCTCTCTGGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACTAGTTCT
592 GTGAGAATAGTTTCTCTATAGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCT
*
33370004 TTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTACCAAACATT
657 TTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATT
* **
33370069 TCATGCTCGGGAAATCGCATCATTTCATCGAAATT-ATTTTTGTGAGAATAGTTTCTCTCT-T-T
722 TCATGCTCGGGAAATTGCATCATTTCATCGAAATTAATTTACGTGAGAATAGTTTCTCTCTGTGT
*
33370131 CTCTTGGACTAACTTCCA
787 CTCTTGGACGAACTTCCA
* *
33370149 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAAACGTTCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCAT
* * * * * * *
33370214 TCCTTCCA-GTAATTTTTCGAACATTCCACGCTCAGG-AATTGCATCATTTCGTCTAAGTAGTTT
66 TCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
* * * * *
33370277 -TCCATTTTGTAAACAGGTTTTGGTTTGTGAATTAAAATCCTGTTTACGTGAGAATTTTTATCCC
131 GT-CATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAA-CTTATTTACGTGAGAATTTTTCTCTC
* * * * *
33370341 TTGATTCTAGGACGAACTTATGAACTTGTCAAACTTTTACGTG-TTCTTTTATAACTTCGATTCC
194 TTGATTCTTGGACGAACTTACGAACTTGTCAAACTTTTACGCGATTCTCTTAT-A-GT--ATT-C
* * * * *
33370405 TTAA-A-GTATTCAAGATTCCTTCCAACAATGTTCCAAACATTCCATCCTCAGAAAATCGCATCA
254 --AAGACG-A-TC--CATTCCTTCCAACAATGTTTCAAACATTCCATCCTCGGGAAATTGCATCA
* * * * * * * * *
33370468 TTTGATCTAAATAGTTTGTCATTTTCTAAATAAGTTTTGTTCTTTGAATTAAAAACTTCTATACG
313 TTTGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACA
* * * * * * *
33370533 TGAGAATTGTTTCGCTCTGGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTT
378 TGAGAATTGTTTCTCTTTGAGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * ** *
33370598 TTCTAACTTC-AGTTCCTTAAAACATTCAAGAAGATCC-ATTCCTTCCAGCAATTTTCCAAACAT
443 TTATAACTTCGA-TTCCTTAAAACATTCAAGACGA-CCAATTCCTTCTGGCAATTTTTCAAACAT
** * * * * * *
33370661 TCCATGCTCGGGAAATTGTATCATTTGGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTTGGT
506 TCCATGCTCGGGAAATTACATCATTT-ATCGAAATAATTTGT-TATCTTGTAAACAAGTTTTGGT
* * * * * * * * *
33370725 -TTGTGAATTA-AAATCATATTTACATGAGAA-ATTTTATCCCT-TA-ATTCTAGGATGAACTTA
569 GTT-TGAATTACAAA-CTTATATACGTGAGAATA-GTT-TCTCTATAGTTTCTTGGACGAACTTC
* * * * * **
33370785 CGAACTTGTCAAACTTTTACGCGGTCTTTTATAACTT-TGATTCCTTATAGTATTCAAGACGATC
630 CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAAAACATTCAAGACGATC
* * * * * * * * *
33370849 CATTCCTTCCAACAATGTTCAAAAC-TTTCAATCCTCAGGAAATCGCATCATTTGATCTAAA-TA
694 CATTCCTTCTAGCAATTTTCCAAACATTTC-ATGCTCGGGAAATTGCATCATTTCATCGAAATTA
* * * * * * * *
33370912 GTTTGTCGTTTTGTA-AACAAGTTTTGTTCTTTGAATTTAAAACTTATATATGTGA-GAATTGTT
758 ATTT-ACG---TG-AGAA-TAG-TTT-CTCTCTG--TGT----C---TCT-TG-GACGAA--CTT
* *
33370975 TCT
802 CCA
** * *
33370978 CTCTTGGTTCTTGGACGAAC-TTT-CGA--ACTTGTCA-AACTTTTACAAGTTCTTTTATAACTT
1 AACTT-G-TC----A--AACTTTTACGAGTTCTT-TTATAAC--TT-C--G--------------
* * * * *
33371038 CGGTTCCTTAAAACATTCAAGGCGATCCATTCCTTCCA-G-TATGTTTCCGAACATTCCATGCTC
38 --GTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGGCAAT-TTTTCAAACATTCCATGCTC
* * ** * *
33371101 AGGAAATCGCATCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTA
100 GGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTTTGTGAATTA
* * * * *
33371166 CAAACTTATTTACGTGAGAATAGTTCCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAAC
165 -AAACTTATTTACGTGAGAAT-TTTTCTCTCTTGATTCTTGGACGAACTTACGAACTTGTCAAAC
* * * ** * *
33371231 TTTTATTAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTTCAGCAA
228 TTTTA--CG--C------GA-TTC---T-CTTATAGTATTCAAGACGATCCATTCCTTCCAACAA
* * * * * *
33371296 T-TTTCTGAACATTCCATACTCAGGAAATTGCATCATTTGGTCTAAGTAGTTT-TCCATTTTTTA
278 TGTTTC-AAACATTCCATCCTCGGGAAATTGCATCATTTGGTCCAAATAGTTTAT-CATTTTGTA
* * * * ** * *
33371359 AACAAGTTTTGGAT-TGTGAATTAAAATCCTATTTAGGTGAGAATT-TTTATCCCTTGA-TT-CT
341 AACAAGTTTT-GTTCTTTGAATTAAAATCATATATACATGAGAATTGTTTCT-CTTTGAGTTCCT
* ** * * * * * * **
33371420 GGGACGAACTTAAGAA-TCTGTTAAACTTTTACGCGTTCTTTTATAACTTTGTTTCCATATAGTA
404 -GGACAAACTTCCGAACT-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAACA
*** * * * * * *
33371484 TTCAAGACGATCC-ATTCCTTCCAACAATGTTCCAAACATTCCCTCCTTGGGAAATAACATCATT
467 TTCAAGACGA-CCAATTCCTTCTGGCAATTTTTCAAACATTCCATGCTCGGGAAATTACATCATT
* * * * * * * * *
33371548 TGATCTAAATAGTTTGTCATTTTGTAAACAAGTATTGATCTTTGAATTAAAAACTTATATATGTG
531 T-ATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTTGAATTACAAACTTATATACGTG
* * * * *
33371613 AGAATTGTTTCTC-ACTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
595 AGAATAGTTTCTCTA-TAGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTT
* * * *
33371677 TATAACTTCATTTCCTTAAAACATTCAAGATGATCCATTCCTTCCAGCAATTTTTCGAACATTCC
659 TATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAA-TTTTCCAA-A---C
* * * *
33371742 ATGCTCGACAAATGGCACCGTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTTT
719 AT--T--TC--AT-GC-TCG---GG----AA-A--TTG-CA-----T---C-A----TT-TCATC
* * * * * *
33371807 G-AATTAAAAACTTATATAGGTGAGAATTGTTTCTCGCT-CGAT-TCTTGGATGAACTTCCG
751 GAAATT---AA--T-T-TACGTGAGAATAGTTTCTCTCTGTG-TCTCTTGGACGAACTTCCA
* * * *
33371866 AACTTGTC-AACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTTAAACATTCGAGACAATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCAT
* ** *
33371930 TCCTTCCA-GCAATTTTTTGAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTT
66 TCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
* * *
33371994 -TCCATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCC
131 GT-CATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAA-CTTATTTACGTGAGAATTTTTCTCTC
* * * * *
33372058 TTGATTCTAGGACGAGCTTACAAACTTGTCAAACATTTATGCG-TTCT-TTATA
194 TTGATTCTTGGACGAACTTACGAACTTGTCAAACTTTTACGCGATTCTCTTATA
33372110 ACTTCGATTC
Statistics
Matches: 5787, Mismatches: 1246, Indels: 1406
0.69 0.15 0.17
Matches are distributed among these distances:
787 4 0.00
788 6 0.00
789 10 0.00
790 10 0.00
791 1 0.00
792 6 0.00
793 2 0.00
794 4 0.00
795 13 0.00
796 31 0.01
797 13 0.00
798 6 0.00
799 9 0.00
800 15 0.00
801 107 0.02
802 142 0.02
803 33 0.01
804 835 0.14
805 62 0.01
806 35 0.01
807 40 0.01
808 255 0.04
809 197 0.03
810 14 0.00
811 9 0.00
812 8 0.00
813 11 0.00
814 6 0.00
815 56 0.01
816 69 0.01
817 77 0.01
818 230 0.04
819 222 0.04
820 30 0.01
821 142 0.02
822 262 0.05
823 22 0.00
824 10 0.00
825 31 0.01
826 20 0.00
827 19 0.00
828 15 0.00
829 8 0.00
830 22 0.00
831 4 0.00
832 1 0.00
833 24 0.00
834 30 0.01
835 25 0.00
836 13 0.00
837 16 0.00
838 14 0.00
839 11 0.00
840 11 0.00
841 9 0.00
842 12 0.00
843 8 0.00
844 16 0.00
845 119 0.02
846 351 0.06
847 380 0.07
848 97 0.02
849 10 0.00
850 5 0.00
852 3 0.00
853 6 0.00
854 66 0.01
855 68 0.01
856 85 0.01
857 60 0.01
858 44 0.01
859 40 0.01
860 23 0.00
861 67 0.01
862 350 0.06
863 326 0.06
864 142 0.02
865 33 0.01
866 16 0.00
867 9 0.00
868 14 0.00
869 29 0.01
870 11 0.00
871 7 0.00
872 3 0.00
873 1 0.00
874 4 0.00
875 10 0.00
876 10 0.00
877 6 0.00
878 5 0.00
879 5 0.00
880 4 0.00
881 4 0.00
882 2 0.00
883 8 0.00
884 1 0.00
886 4 0.00
887 3 0.00
888 6 0.00
889 2 0.00
890 5 0.00
891 2 0.00
892 1 0.00
895 1 0.00
896 1 0.00
899 1 0.00
900 4 0.00
901 6 0.00
902 3 0.00
903 2 0.00
904 5 0.00
906 1 0.00
907 2 0.00
908 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (804 bp):
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCAT
TCCTTCTAGGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
GTCATTTTGTAAACAAGTTTTGGTTTGTGAATTAAAACTTATTTACGTGAGAATTTTTCTCTCTT
GATTCTTGGACGAACTTACGAACTTGTCAAACTTTTACGCGATTCTCTTATAGTATTCAAGACGA
TCCATTCCTTCCAACAATGTTTCAAACATTCCATCCTCGGGAAATTGCATCATTTGGTCCAAATA
GTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATGAGAATTGTTTC
TCTTTGAGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAT
TCCTTAAAACATTCAAGACGACCAATTCCTTCTGGCAATTTTTCAAACATTCCATGCTCGGGAAA
TTACATCATTTATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTTGAATTACAAACTT
ATATACGTGAGAATAGTTTCTCTATAGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG
AGTTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCA
AACATTTCATGCTCGGGAAATTGCATCATTTCATCGAAATTAATTTACGTGAGAATAGTTTCTCT
CTGTGTCTCTTGGACGAACTTCCA
Found at i:33365896 original size:216 final size:215
Alignment explanation
Indices: 33365442--33366371 Score: 1048
Period size: 216 Copynumber: 4.3 Consensus size: 215
33365432 TCCTTATAGT
* * * * *
33365442 ATTCAAGACGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATTGCATCATT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATT
* * * *
33365507 TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATG
66 TGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-TTTGAATTAAAATCTTATATACGTG
* *
33365572 AGAATTGTTTCTCT-TTGGGGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
130 AGAATTGTTTCTCTCTT--GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
33365636 TTATAACTTCGGTTCCTTAAAAC
193 TTATAACTTCGGTTCCTTAAAAC
* ** *
33365659 ATTCAAGACGATCAATTCCTTCTGGCAATTTTTCGAACATTCCATGCTCGGGAAATTGCATCATT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATT
** * * * * *
33365724 TCATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTTGAATTACAAA-CTTATTTACGT
66 TGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-TTTGAATTA-AAATCTTATATACGT
* * * *
33365788 GAGAATAGTTTCTCTATTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
33365853 TATAACTTCGGTTCCTTAAAAC
194 TATAACTTCGGTTCCTTAAAAC
* * *
33365875 ATTCAAGACAATCCATTCCTTCCAGTAATTTTTTGAAA-ATTCCATGCTCGGGAAATTGCATCAT
1 ATTCAAGACGATCCATTCCTTCCAGCAA-TTTTTCAAACATTCCATGCTCGGGAAATTGCATCAT
* * * * *
33365939 TTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTTGTTTGTGAATTAAAATCCTATTTACG
65 TTGGTCCAAATAGTTTGT-CATTTTGTAAACAAGTTTTGGTTT-TGAATTAAAATCTTATATACG
* * ** * * * *
33366003 TGAGAATT-TTTATCCCTTAATTCTAGGACGAACTTACGAACTTGTCAAACTTTTACGCGTTTTT
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * **
33366067 TTATAACTTCGATTCCTTATAGT
193 TTATAACTTCGGTTCCTTAAAAC
* * * * * * * * * *** *
33366090 TTTGAAGATGA-CCAATTTCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAACCACATAAT
1 ATTCAAGACGATCC-ATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCAT
* * *
33366154 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GTTATGTGAATAAAAAACTTATATACG
65 TTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTT-T-TGAATTAAAATCTTATATACG
* * * *
33366218 TAAGAGTTGTTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * *
33366283 TTGTAACTTCAGTTGCTTAAAAC
193 TTATAACTTCGGTTCCTTAAAAC
* * *
33366306 ATTCAAGACGATCCATTCCTTCTAGCAATTTTTCAAACATTTCATGC-CTGGGAAATCGCATCAT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTC-GGGAAATTGCATCAT
33366370 TT
65 TT
33366372 CATCGAAATT
Statistics
Matches: 587, Mismatches: 113, Indels: 27
0.81 0.16 0.04
Matches are distributed among these distances:
214 11 0.02
215 167 0.28
216 277 0.47
217 127 0.22
218 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (215 bp):
ATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATT
TGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTTTTGAATTAAAATCTTATATACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
TAACTTCGGTTCCTTAAAAC
Found at i:33366246 original size:431 final size:432
Alignment explanation
Indices: 33365442--33366371 Score: 1127
Period size: 431 Copynumber: 2.2 Consensus size: 432
33365432 TCCTTATAGT
* * * * *
33365442 ATTCAAGACGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATTGCATCATT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATT
*
33365507 TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATG
66 TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTGTGAATTAAAATCATATATACATG
* ** *
33365572 AGAATTGTTTCTCTTTGGGGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
131 AGAATTGTTTCTCCTT-GAATTCCTGGACAAACTTACGAACTTGTCAAACTTTTACGAGTTCTTT
* * *** * * *
33365637 TATAACTTCGGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTTCGAACATTCC
195 TATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACATTCC
* * *** * * * *
33365702 ATGCTCGGGAAATTGCATCATTTCATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTT
260 ATCCTCGAGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGTAAACAAGTTTTGGTATGT
* * * * * *
33365767 GAATTACAAACTTATTTACGTGAGAATAGTTTCTCTATTGTTTCTTGGACGAACTTCCAAACTTG
325 GAATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAACTTG
*
33365832 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAAC
390 TCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
* * *
33365875 ATTCAAGACAATCCATTCCTTCCAGTAATTTTTTGAAA-ATTCCATGCTCGGGAAATTGCATCAT
1 ATTCAAGACGATCCATTCCTTCCAGCAA-TTTTTCAAACATTCCATGCTCGGGAAATTGCATCAT
* * * *
33365939 TTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTTGTT-TGTGAATTAAAATCCTATTTAC
65 TTGGTCCAAATAGTTTAT-CATTTTGTAAACAAG-TTTTGTTCTGTGAATTAAAATCATATATAC
* * * *
33366002 GTGAGAATT-TTTATCCCTT-AATT-CTAGGACGAACTTACGAACTTGTCAAACTTTTACGCGTT
128 ATGAGAATTGTTTCT-CCTTGAATTCCT-GGACAAACTTACGAACTTGTCAAACTTTTACGAGTT
* * *** * * *
33366064 TTTTTATAACTTCGATTCCTTATAGTTTTGAAGATGACCAATTTCTTCCAACAATGTTCCAAACA
191 CTTTTATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACA
** * * * *
33366129 TTCCATCCTCGAGAAACCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTT
256 TTCCATCCTCGAGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGTAAACAAGTTTTGGT
* * * * *
33366194 ATGTGAATAAAAAACTTATATACGTAAGAGTTGTTTCTCTCTAGGTTCTTGGACGAACTTTCGAA
321 ATGTGAATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAA
* *
33366259 CTTGTCAAACTTTTACGAGTTCTTTTGTAACTTCAGTTGCTTAAAAC
386 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
* * *
33366306 ATTCAAGACGATCCATTCCTTCTAGCAATTTTTCAAACATTTCATGC-CTGGGAAATCGCATCAT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTC-GGGAAATTGCATCAT
33366370 TT
65 TT
33366372 CATCGAAATT
Statistics
Matches: 418, Mismatches: 72, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
430 11 0.03
431 281 0.67
432 5 0.01
433 108 0.26
434 13 0.03
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (432 bp):
ATTCAAGACGATCCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATCATT
TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTGTGAATTAAAATCATATATACATG
AGAATTGTTTCTCCTTGAATTCCTGGACAAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTT
ATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACATTCCA
TCCTCGAGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGTAAACAAGTTTTGGTATGTG
AATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAACTTGT
CAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
Found at i:33366512 original size:172 final size:172
Alignment explanation
Indices: 33366226--33366539 Score: 499
Period size: 172 Copynumber: 1.8 Consensus size: 172
33366216 CGTAAGAGTT
* * *
33366226 GTTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTGTAACT
1 GTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* *
33366291 TCAGTTGCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTTCAAACATTTCATGC-CT
66 TCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTTCAAACATTCCATGCTC-
33366355 GGGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
130 GGGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
*
33366398 GTTTCTCTCT-TGTCTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
1 GTTTCTCTCTAGGT-TCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* *
33366462 TTCGGTTCCTTAAAACATTCAAGACGTTCCATTCCTTCTAGTC-ATTTTTCAAACATTCCATGCT
65 TTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAG-CAATTTTTCAAACATTCCATGCT
*
33366526 CGGGAAATTGCATC
129 CGGGAAATCGCATC
33366540 TTTTGGTCTA
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
171 2 0.02
172 126 0.97
173 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (172 bp):
GTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
TCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTTCAAACATTCCATGCTCG
GGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
Found at i:33367130 original size:216 final size:215
Alignment explanation
Indices: 33366386--33367605 Score: 1263
Period size: 216 Copynumber: 5.7 Consensus size: 215
33366376 GAAATTAATT
* *
33366386 TACGTGAGAATAGTTTCTCTCTT-GTCTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAG
1 TACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
* * *
33366450 TTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGTTCCATTCCTTCTAGTC-ATTTTTCAA
65 TTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAG-CAATTTTCCAA
* * *
33366514 ACATTCCATGCTCGGGAAATTGCATCTTTTGGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTT
129 ACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAATAGTTTGT-CATTTTGTAAACAAGTTT
* *
33366578 TGGTTTGTGAATTAAAATCCTATT
193 TGGTTT-TGAATTAAAATCTTATA
* * * * * * *
33366602 TACGTGTGAATT-TTTATCCCTTGATTCTAGGATGAACTTACGAACTTGTC--A-----AC----
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
* * * ** * *
33366655 -C-TTT-T-AC-ACGATTCCTTATAGTATTCAAGACGATCCATTCCTTCCAACAATGTTCCAAAC
66 TCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAAC
* * * *
33366715 ATTCCATCCTCGAGAAATTGCATCATTTGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGT
131 ATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
*
33366780 TCTTTGAATTAAAATCATATA
196 T-TTTGAATTAAAATCTTATA
* * *
33366801 TACATGAGAATTGTTTCTCT-TTGGGGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGA
1 TACGTGAGAATTGTTTCTCTCTT--GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* ** * *
33366865 GTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTTCGA
64 GTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAA
* ** * * * *
33366930 ACATTTCATGCTCGGGAAATTGCATCATTTCATCGAAATAATTTGTTATCTTGTAAACAAGTTTT
129 ACATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTT
*
33366995 GGTGTTTGAATTACAAA-CTTATT
194 GGT-TTTGAATTA-AAATCTTATA
* * * *
33367018 TACGTGAGAATAGTTTCTCTATTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
* **
33367083 TCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGTAATTTTTTGAAA
66 TCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAA-TTTTCCAAA
* *
33367148 -ATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTT
130 CATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAATAGTTTGT-CATTTTGTAAACAAGTTTT
* *
33367211 -GTTTGTGAATTAAAATCCTATT
194 GGTTT-TGAATTAAAATCTTATA
* * * ** * * *
33367233 TACGAGAGAATT-TTTATCCCTTAATTCTAGGACGAACTTACGAACTTGTCAAACTTTTACGCGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
* * * *** * * * * *
33367297 TTTTTTATAACTTCGATTCCTTATAGTTTTGAAGATGA-CCAATTTCTTCCAACAATGTTCCAAA
66 TCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCC-ATTCCTTCCAGCAATTTTCCAAA
* *** * *
33367361 CATTCCATCCTCGGGAAACCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
130 CATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * *
33367426 TTATTTGAATAAAAAACTTATA
195 GT-TTTGAATTAAAATCTTATA
* * * *
33367448 TACGTAAGAGTTGTTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
* * * *
33367513 TCTTTTGTAACTTCAGTTGCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAAC
66 TCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAAC
* *
33367578 ATTTCATGC-CTGGGAAATCGCATCATTT
131 ATTCCATGCTC-GGGAAATTGCATCATTT
33367606 CATCGAAATT
Statistics
Matches: 813, Mismatches: 154, Indels: 74
0.78 0.15 0.07
Matches are distributed among these distances:
198 1 0.00
199 126 0.15
200 10 0.01
201 23 0.03
202 3 0.00
203 2 0.00
208 4 0.00
213 10 0.01
214 145 0.18
215 80 0.10
216 268 0.33
217 136 0.17
218 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (215 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
TCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAAC
ATTCCATGCTCGGGAAATTGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
TTTTGAATTAAAATCTTATA
Found at i:33367479 original size:430 final size:432
Alignment explanation
Indices: 33366677--33367605 Score: 1145
Period size: 430 Copynumber: 2.2 Consensus size: 432
33366667 TCCTTATAGT
* * * *
33366677 ATTCAAGACGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATTGCATCATT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCATT
*
33366742 TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATG
66 TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTGTGAATTAAAATCATATATACATG
* ** *
33366807 AGAATTGTTTCTCTTTGGGGTTCCTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
131 AGAATTGTTTCTCCTT-GAATTCCTGGACAAACTTACGAACTTGTCAAACTTTTACGAGTTCTTT
* * *** * * * *
33366872 TATAACTTCGGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTTCGAACATTTC
195 TATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACATTCC
* *** * * *
33366937 ATGCTCGGGAAATTGCATCATTTCATCGAAATAATTTGTTATCTTGTAAACAAGTTTTGGTGTTT
260 ATCCTCGGGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGTAAACAAGTTTTGGTATTT
* * * * * *
33367002 GAATTACAAACTTATTTACGTGAGAATAGTTTCTCTATTGTTTCTTGGACGAACTTCCAAACTTG
325 GAATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAACTTG
*
33367067 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAAC
390 TCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
* **
33367110 ATTCAAGACGATCCATTCCTTCCAGTAATTTTTTGAAA-ATTCCATGCTCGGGAAATTGCATCAT
1 ATTCAAGACGATCCATTCCTTCCAGCAA-TTTTCCAAACATTCCATGCTCGGGAAATTGCATCAT
* * * *
33367174 TTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTGTT-TGTGAATTAAAATCCTATTTACG
65 TTGGTCCAAATAGTTTAT-CATTTTGTAAACAAGTTTTGTTCTGTGAATTAAAATCATATATAC-
* * *
33367237 A-GAGAATT-TTTATCCCTT-AATT-CTAGGACGAACTTACGAACTTGTCAAACTTTTACGCGTT
128 ATGAGAATTGTTTCT-CCTTGAATTCCT-GGACAAACTTACGAACTTGTCAAACTTTTACGAGTT
* * *** * * *
33367298 TTTTTATAACTTCGATTCCTTATAGTTTTGAAGATGACCAATTTCTTCCAACAATGTTCCAAACA
191 CTTTTATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACA
** * * * *
33367363 TTCCATCCTCGGGAAACCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTT
256 TTCCATCCTCGGGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGTAAACAAGTTTTGGT
* * * * *
33367428 ATTTGAATAAAAAACTTATATACGTAAGAGTTGTTTCTCTCTAGGTTCTTGGACGAACTTTCGAA
321 ATTTGAATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAA
* *
33367493 CTTGTCAAACTTTTACGAGTTCTTTTGTAACTTCAGTTGCTTAAAAC
386 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
* * *
33367540 ATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGC-CTGGGAAATCGCATCAT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAACATTCCATGCTC-GGGAAATTGCATCAT
33367604 TT
65 TT
33367606 CATCGAAATT
Statistics
Matches: 420, Mismatches: 69, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
429 10 0.02
430 283 0.67
431 4 0.01
432 30 0.07
433 87 0.21
434 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (432 bp):
ATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCATT
TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTGTGAATTAAAATCATATATACATG
AGAATTGTTTCTCCTTGAATTCCTGGACAAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTT
ATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACATTCCA
TCCTCGGGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGTAAACAAGTTTTGGTATTTG
AATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAACTTGT
CAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
Found at i:33367751 original size:172 final size:172
Alignment explanation
Indices: 33367460--33367773 Score: 490
Period size: 172 Copynumber: 1.8 Consensus size: 172
33367450 CGTAAGAGTT
* * *
33367460 GTTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTGTAACT
1 GTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* *
33367525 TCAGTTGCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGC-CT
66 TCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTCCATGCTC-
33367589 GGGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
130 GGGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
*
33367632 GTTTCTCTCT-TGTCTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
1 GTTTCTCTCTAGGT-TCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
33367696 TTCGGTTCCTTAAAACATTCAAGACGTTCCATTCCTTCTAGTC-ATTTTTCAAACATTCCATGCT
65 TTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAG-CAATTTTCCAAACATTCCATGCT
*
33367760 CGGGAAATTGCATC
129 CGGGAAATCGCATC
33367774 TTTTGGTCTA
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
171 2 0.02
172 125 0.97
173 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (172 bp):
GTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
TCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTCCATGCTCG
GGAAATCGCATCATTTCATCGAAATTAATTTACGTGAGAATA
Found at i:33368356 original size:216 final size:215
Alignment explanation
Indices: 33367911--33368840 Score: 1026
Period size: 216 Copynumber: 4.3 Consensus size: 215
33367901 TCCTTATAGT
* * * * * *
33367911 ATTCAAGATGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATTGCATCATT
1 ATTCAAGACGATCAATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCATT
* * * *
33367976 TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATG
66 TGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-TTTGAATTAAAATCTTATATACGTG
* * *
33368041 AGAATTGTTTCTCT-TTGGGGTTCCTAGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
130 AGAATTGTTTCTCTCTT--GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
33368105 TTATAACTTCGGTTCCTTAAAAC
193 TTATAACTTCGGTTCCTTAAAAC
** * *
33368128 ATTCAAGACGATCAATTCCTTCTGGCAATTTTTCGAACATTCCATGCTCGGGAAATTGCATCATT
1 ATTCAAGACGATCAATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCATT
** * * * * * *
33368193 TCATCGAAATAATTTGTTATCTTGCAAACAAGTTTTGGTGTTTGAATTACAAA-CTTATTTACGT
66 TGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-TTTGAATTA-AAATCTTATATACGT
* * * *
33368257 GAGAATAGTTTCTCTATTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
33368322 TATAACTTCGGTTCCTTAAAAC
194 TATAACTTCGGTTCCTTAAAAC
* * **
33368344 ATTCAAGACGATCCATTCCTTCCAGTAATTTTTTGAAA-ATTCCATGCTCGGGAAATTGCATCAT
1 ATTCAAGACGATCAATTCCTTCCAGCAA-TTTTCCAAACATTCCATGCTCGGGAAATTGCATCAT
* * * * *
33368408 TTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTTGTTTGTGAATTAAAATCCTATTTACG
65 TTGGTCCAAATAGTTTGT-CATTTTGTAAACAAGTTTTGGTTT-TGAATTAAAATCTTATATACG
* * ** * * * *
33368472 TGAGAATT-TTTATCCCTTAATTCTAGGACGAACTTACGAACTTGTCAAACTTTTACGCGTTTTT
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * **
33368536 TTATAACTTCGATTCCTTATAGT
193 TTATAACTTCGGTTCCTTAAAAC
* * * * * * * * *** *
33368559 TTTGAAGATGACCAATTTCTTCCAACAATGTTCCAAACATTCCATCCTCGGGAAACCACATAATT
1 ATTCAAGACGATCAATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCATT
* ** * * *
33368624 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTATTATTTGAATAAAAAACTTATATACGTA
66 TGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-TTTGAATTAAAATCTTATATACGTG
* * *
33368689 AGAGTTGTTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
33368754 GTAACTTCAGTTGCTTAAAAC
195 ATAACTTCGGTTCCTTAAAAC
* * * *
33368775 ATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGC-CTGGGAAATCGCATCAT
1 ATTCAAGACGATCAATTCCTTCCAGCAATTTTCCAAACATTCCATGCTC-GGGAAATTGCATCAT
33368839 TT
65 TT
33368841 CATCGAAATT
Statistics
Matches: 584, Mismatches: 118, Indels: 23
0.81 0.16 0.03
Matches are distributed among these distances:
214 6 0.01
215 169 0.29
216 281 0.48
217 123 0.21
218 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (215 bp):
ATTCAAGACGATCAATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCATT
TGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTTTTGAATTAAAATCTTATATACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
TAACTTCGGTTCCTTAAAAC
Found at i:33368714 original size:431 final size:432
Alignment explanation
Indices: 33367911--33368840 Score: 1127
Period size: 431 Copynumber: 2.2 Consensus size: 432
33367901 TCCTTATAGT
* * * * *
33367911 ATTCAAGATGATCCATTCCTTCCAACAATGTTCCAAACATTCCATCCTCGAGAAATTGCATCATT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCATT
*
33367976 TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAATCATATATACATG
66 TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTGTGAATTAAAATCATATATACATG
* ** *
33368041 AGAATTGTTTCTCTTTGGGGTTCCTAGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
131 AGAATTGTTTCTCCTT-GAATTCCTAGACAAACTTACGAACTTGTCAAACTTTTACGAGTTCTTT
* * *** * * *
33368106 TATAACTTCGGTTCCTTAAAACATTCAAGACGATCAATTCCTTCTGGCAATTTTTCGAACATTCC
195 TATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACATTCC
* *** * * * *
33368171 ATGCTCGGGAAATTGCATCATTTCATCGAAATAATTTGTTATCTTGCAAACAAGTTTTGGTGTTT
260 ATCCTCGGGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGCAAACAAGTTTTAGTATTT
* * * * * *
33368236 GAATTACAAACTTATTTACGTGAGAATAGTTTCTCTATTGTTTCTTGGACGAACTTCCAAACTTG
325 GAATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAACTTG
*
33368301 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAAC
390 TCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
* **
33368344 ATTCAAGACGATCCATTCCTTCCAGTAATTTTTTGAAA-ATTCCATGCTCGGGAAATTGCATCAT
1 ATTCAAGACGATCCATTCCTTCCAGCAA-TTTTCCAAACATTCCATGCTCGGGAAATTGCATCAT
* * * *
33368408 TTGGTCCAAGTAGTTT-TCCATTTTTTAAACAAGTTTTTGTT-TGTGAATTAAAATCCTATTTAC
65 TTGGTCCAAATAGTTTAT-CATTTTGTAAACAAG-TTTTGTTCTGTGAATTAAAATCATATATAC
* * * *
33368471 GTGAGAATT-TTTATCCCTT-AATT-CTAGGACGAACTTACGAACTTGTCAAACTTTTACGCGTT
128 ATGAGAATTGTTTCT-CCTTGAATTCCTA-GACAAACTTACGAACTTGTCAAACTTTTACGAGTT
* * *** * * *
33368533 TTTTTATAACTTCGATTCCTTATAGTTTTGAAGATGACCAATTTCTTCCAACAATGTTCCAAACA
191 CTTTTATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACA
** * * * * *
33368598 TTCCATCCTCGGGAAACCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTATT
256 TTCCATCCTCGGGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGCAAACAAGTTTTAGT
* * * * *
33368663 ATTTGAATAAAAAACTTATATACGTAAGAGTTGTTTCTCTCTAGGTTCTTGGACGAACTTTCGAA
321 ATTTGAATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAA
* *
33368728 CTTGTCAAACTTTTACGAGTTCTTTTGTAACTTCAGTTGCTTAAAAC
386 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
* * *
33368775 ATTCAAGACGATCCATTCCTTCTAGCAATTTTCCAAACATTTCATGC-CTGGGAAATCGCATCAT
1 ATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAACATTCCATGCTC-GGGAAATTGCATCAT
33368839 TT
65 TT
33368841 CATCGAAATT
Statistics
Matches: 418, Mismatches: 72, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
430 11 0.03
431 281 0.67
432 5 0.01
433 108 0.26
434 13 0.03
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (432 bp):
ATTCAAGACGATCCATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGCATCATT
TGGTCCAAATAGTTTATCATTTTGTAAACAAGTTTTGTTCTGTGAATTAAAATCATATATACATG
AGAATTGTTTCTCCTTGAATTCCTAGACAAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTT
ATAACTTCGATTCCTTAAAACATTCAAGACGACCAATTCCTTCCAACAATGTTCCAAACATTCCA
TCCTCGGGAAACCACATAATTTCATCGAAATAATTTGTCATCTTGCAAACAAGTTTTAGTATTTG
AATAAAAAACTTATATACGTAAGAATAGTTTCTCTATAGGTTCTTGGACGAACTTCCAAACTTGT
CAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAAC
Found at i:33369376 original size:216 final size:216
Alignment explanation
Indices: 33368855--33370093 Score: 1435
Period size: 216 Copynumber: 5.7 Consensus size: 216
33368845 GAAATTAATT
* * *
33368855 TACGTGAGAATAGTTTCTCTCTT-GTCTCTTGGACGAACTTCCAAACTTGTCAAACGTTTACGAG
1 TACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAG
* * * * *
33368919 TTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGTTCCATTCCTTCTAGTC-ATTTTTCAA
65 TTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCA-ACAATTTTCCAA
* * * * * * *
33368983 ACATTCCATGCTCGGGAATTGCATGCATCTTTTGCTATAAGTAGTTTTTCATTTTGTAAACAAGT
129 ACATTCCATGCTCCGGAAAT-C--GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * * *
33369048 TTTGGTT-TGTGAATTAAAATCCTATT
191 TTT-GTTCTTTGAATTAAAAACTTATA
* * * * * * *
33369074 TACGTGTGAATT-TTTATCCCTTGATTCTAGGACGAACTTACAAACTTGTCAAACTTTTACGCGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGT
* ** * *
33369138 TCTTTTATAACTTC-GATTCCTTATAGTATTCAAGAGGATCCATTCCTTCCAACAATGTTCCAAA
66 TCTTTTATAACTTCAG-TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAACAATTTTCCAAA
* * *
33369202 CATTCCATCCTCCGGAAATTGCATCATTTGGTCTACATAGTTTGTCATTTTGTAAACAAGTTTTG
130 CATTCCATGCTCCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
33369267 TTCTTTGAATTAAAAACTTATA
195 TTCTTTGAATTAAAAACTTATA
*
33369289 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTAAAACTTTTACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGT
* * * * * * * *
33369354 TCATTTATAACTTTAGTTCCTTAAAATATTTAACACGATCCATTCCTTCCAGCAATTTTTCGAAC
66 TCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAACAATTTTCCAAAC
* *
33369419 ATTGCATGCT-CGACAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
131 ATTCCATGCTCCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
*
33369483 GTCTTTGAATTAAAAACTTATA
195 TTCTTTGAATTAAAAACTTATA
* * *
33369505 TAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTT-AGAACTTGTCAAACTTTTACAAG
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCA-AACTTGTCAAACTTTTACGAG
* * * *
33369569 TTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGATGATCCATTCCTT-CAAGCAATTTTTCGA
65 TTCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAA-CAATTTTCCAA
** * *
33369633 ACATTCCATGCTTGGGAAATTGCATCATTTGGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTT
129 ACATTCCATGCTCCGGAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAAGTTT
* * * *
33369697 TGGTT-TGTGAATTAAAATCCTATT
193 T-GTTCTTTGAATTAAAAACTTATA
* * ** * *
33369721 TACGTGAGAATT-TTTATCCCTTAATTCTAGGACGAACTTAT-GAACTTGTCAAACTTTTAC-AC
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TCAAACTTGTCAAACTTTTACGA-
* * **** * * *
33369783 ATTCTTTTATAAGTTC-GATTCCTTATTGTATTCAAGACGATCCATTTCTTCCAACAATGTTCGA
64 GTTCTTTTATAACTTCAG-TTCCTTAAAACATTCAAGACGATCCATTCCTTCCAACAATTTTCCA
* * * *
33369847 AACATTCCATCCTCGGGAGATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTT
128 AACATTCCATGCTCCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
33369912 TGTTCTTTGAATTAAAAACTTATA
193 TGTTCTTTGAATTAAAAACTTATA
* * * * *
33369936 TACGTGAGAGTTGTTTCTCTCTGGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACTAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGT
* * *
33370001 TCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTACCAAAC
66 TCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAACAATTTTCCAAAC
* *
33370066 ATTTCATGCTCGGGAAATCGCATCATTT
131 ATTCCATGCTCCGGAAATCGCATCATTT
33370094 CATCGAAATT
Statistics
Matches: 866, Mismatches: 132, Indels: 47
0.83 0.13 0.04
Matches are distributed among these distances:
214 8 0.01
215 240 0.28
216 489 0.56
217 8 0.01
218 110 0.13
219 11 0.01
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (216 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGT
TCTTTTATAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAACAATTTTCCAAAC
ATTCCATGCTCCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGT
TCTTTGAATTAAAAACTTATA
Found at i:33369965 original size:431 final size:431
Alignment explanation
Indices: 33368885--33372123 Score: 1791
Period size: 431 Copynumber: 7.6 Consensus size: 431
33368875 CTTGTCTCTT
* * * *
33368885 GGACGAACTTCCAAACTTGTCAAACGTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATT
1 GGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATATT
* * * * *
33368950 CAAGACGTTCCATTCCTTCTAGTCATTTTTC-AAACATTCCATGCTCGGGAATTGCATGCATCTT
66 CAAGACGATCCATTCCTTCCA-ACAATTTTCGAAACATTCCATGCTCGGGAATCGCAT-CAT-TT
* * * * * *
33369014 -TTGCTATAAGTAGTTTTTCATTTTGTAAACAAGTTTTGGTT-TGTGAATTAAAATCCTATTTAC
128 GGT-CTA-AA-TAGTTTGTCATTTTGTAAACAAGTTTT-GTTCTTTGAATTAAAAACTTATATAC
* * * * * * **
33369077 GTGTGAATT-TTTATCCCTTGATTCTAGGACGAAC-TTACAAACTTGTCAAACTTTTACGCGTTC
189 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTA-GAACTTGTCAAACTTTTACAAGTTC
* * ** * *
33369140 TTTTATAACTTCGATTCCTTATAGTATTCAAGAGGATCCATTCCTTCCAA-CAATGTTCCAAACA
253 TTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTT-CAAGCAATTTTCCAAACA
* *
33369204 TTCCATCCTCCGGAAATTGCATCATTTGGTCTACATAGTTTGTCATTTTGTAAACAAGTTTTGTT
317 TTCCATGCTCGGGAAATTGCATCATTTGGTCTACATAGTTTGTCATTTTGTAAACAAGTTTTGTT
* * * * ** *
33369269 CTTTGAATTAAAAACTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTT
382 CTGTGAATTAAAAACCTATATACGTGAGAATTGTTTATCCCTTAATTCTA
* * *
33369319 GGACGAACTTTCAAACTTGTAAAACTTTTACGAGTTCATTTATAACTT-TAGTTCCTTAAAATAT
1 GGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAATAT
* * * * **
33369383 TTAACACGATCCATTCCTTCCAGCAATTTTTCG-AACATTGCATGCTCGACAAATCGCATCATTT
65 TCAAGACGATCCATTCCTTCCAACAA-TTTTCGAAACATTCCATGCTCG-GGAATCGCATCATTT
* *
33369447 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATATAGGTGA
128 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGA
*
33369512 GAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTAGAACTTGTCAAACTTTTACAAGTTCTTTTA
193 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACAAGTTCTTTTA
* * *
33369577 TAACTTCGGTTCCTTAAAACATTCAAGATGATCCATTCCTTCAAGCAATTTTTCGAACATTCCAT
258 TAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCAAGCAATTTTCCAAACATTCCAT
*
33369642 GCTTGGGAAATTGCATCATTTGGTCTA-AGTAGTTT-TCCATTTTGTAAACAAGTTTTGGTT-TG
323 GCTCGGGAAATTGCATCATTTGGTCTACA-TAGTTTGT-CATTTTGTAAACAAGTTTT-GTTCTG
* *
33369704 TGAATTAAAATCCTATTTACGTGAGAATT-TTTATCCCTTAATTCTA
385 TGAATTAAAAACCTATATACGTGAGAATTGTTTATCCCTTAATTCTA
* * * ***
33369750 GGACGAACTTAT-GAACTTGTCAAACTTTTAC-ACATTCTTTTATAAGTTCGATTCCTTATTGTA
1 GGACGAACTT-TCAAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGATTCCTTAAAATA
* * *
33369813 TTCAAGACGATCCATTTCTTCCAACAATGTTCGAAACATTCCATCCTCGGGAGATCGCATCATTT
64 TTCAAGACGATCCATTCCTTCCAACAATTTTCGAAACATTCCATGCTCGGGA-ATCGCATCATTT
*
33369878 GGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGA
128 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGA
* * * * *
33369943 GAGTTGTTTCTCTCTGGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTA
193 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACAAGTTCTTTTA
* * * *
33370008 TAACTTCAGTTCCTTAAAACATTCAAGACGATCCATTCCTTCTAGCAATTTACCAAACATTTCAT
258 TAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCAAGCAATTTTCCAAACATTCCAT
* ** * * * *
33370073 GCTCGGGAAATCGCATCATTTCATCGA-A-A--TTAT--TTTTGTGAGAA-TAGTTTCTCTCTTT
323 GCTCGGGAAATTGCATCATTTGGTCTACATAGTTTGTCATTTTGT-A-AACAAG-TT-T-T-GTT
* ** * * * * * * * ** **
33370131 CTCTTGGACTAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
382 CT-GT-G---AA-TTAAAAACCTAT-ATAC-GTGA-GAATT-GTTTATCCCTT-AATT-C-TA
* * * * ** * *
33370194 --A--AACATTCAAAACGT-TC-CA-TTCCTT-CCAGTAAT-TTTTCGAACATTCCA--CGCTCA
1 GGACGAACTTTC-AAACTTGTCAAACTT--TTACGAGT--TCTTTTATAAC-TTCGATTC-CTTA
** * * * * * *** *** * ** * *
33370248 GGA-ATT---G-C-AT-CATTTCGTCTAAGTAGTTTTC----CATTTTGTAAACAGGTTTTG-GT
59 AAATATTCAAGACGATCCATTCCTTCCAA-CAATTTTCGAAACATTCCATGCTCGGGAATCGCAT
* * ** * * * * * * * *
33370301 --TTGTGAAT-TAAA-A-TCCTGT--TTACGT-GAGAATTTTTATCCCTTGATTCTAGGACGAAC
123 CATT-TG-GTCTAAATAGT-TTGTCATTTTGTAAACAAGTTTTGTTCTTTGAAT-TA--A-AAAC
* ** ** * * ** * *
33370358 TTATGA-ACTTGTCAA-ACTTT-T-ACGT-GTTCTTTTA-TAAC-TTCG-A--T-TC---C--TT
181 TTAT-ATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTT
* * * **
33370407 A-AAG-T-ATTCA-AGA-TTC-CTTCC--AACAATGTTCCAA-AC-ATTCCA-TCC-TC-AG-AA
245 ACAAGTTCTTTTATA-ACTTCGGTTCCTTAA-AACATT-CAAGACGA-TCCATTCCTTCAAGCAA
** * ** **** ** *
33370458 -AATCGC-ATCATTTGAT-CTAAATAGTTTG--TCATTT--TCTAAATAAGTTTTGT--TCTTTG
306 TTTTC-CAAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTACAT-AG-TTTGTCAT-TTTG
** **** * * ** * ***
33370514 -AATTAA--AAACTTC--T--A-T----ACGTGA-G--------AATTGTTTCGCTCTGGGTTCT
367 TAAACAAGTTTTGTTCTGTGAATTAAAAACCT-ATATACGTGAGAATTGTTTATCCCTTAATTCT
*
33370558 T
431 A
* * * *
33370559 GGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTCTAACTTC-AGTTCCTTAAAACAT
1 GGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAATAT
* * * * *
33370623 TCAAGAAGATCCATTCCTTCCAGCAATTTTCCAAACATTCCATGCTCGGGAAATTGTATCATTTG
65 TCAAGACGATCCATTCCTTCCAACAATTTTCGAAACATTCCATGCTCGGG-AATCGCATCATTTG
* * * * * *
33370688 GTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTTGGTT-TGTGAATTAAAATCATATTTACATG
129 GTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTTCTTTGAATTAAAAACTTATATACGTG
* * * ** * * ** *
33370751 AGAAAT-TTTATCCCTTAATTCTAGGATGAAC-TTACGAACTTGTCAAACTTTTACGCGGTCTTT
192 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTA-GAACTTGTCAAACTTTTACAAGTTCTTT
* * * ** * * *
33370814 TATAACTTTGATTCCTTATAGTATTCAAGACGATCCATTCCTTCCAA-CAATGTTCAAAACTTTC
256 TATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTT-CAAGCAATTTTCCAAACATTC
* * * * * * * *
33370878 AATCCTCAGGAAATCGCATCATTTGATCTAAATAGTTTGTCGTTTTGTAAACAAGTTTTGTTCTT
320 CATGCTCGGGAAATTGCATCATTTGGTCTACATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTG
* * * * * ** *
33370943 TGAATTTAAAACTTATATATGTGAGAATTGTTTCTCTCTTGGTTCTT
385 TGAATTAAAAACCTATATACGTGAGAATTGTTTATCCCTTAATTCTA
* * * *
33370990 GGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAACATT
1 GGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATATT
* ** *
33371055 CAAGGCGATCCATTCCTTCC-AGTATGTTTCCG-AACATTCCATGCTCAGGAAATCGCATCATTT
66 CAAGACGATCCATTCCTTCCAACAAT-TTT-CGAAACATTCCATGCTC-GGGAATCGCATCATTT
** * * * * *
33371118 CATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTACAAACTTATTTACGTGA
128 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGA
* * * * **
33371183 GAATAGTTCCTCTCTTGTTTCTTGGACGAACTTCCA-AACTTGTCAAACTTTTATTAGTTCTTTT
193 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TAGAACTTGTCAAACTTTTACAAGTTCTTTT
**
33371247 ATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTTC-AGCAATTTTCTGAACATTCC
257 ATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCC-TTCAAGCAATTTTCCAAACATTCC
* * * *
33371311 ATACTCAGGAAATTGCATCATTTGGTCTA-AGTAGTTT-TCCATTTTTTAAACAAGTTTTGGAT-
321 ATGCTCGGGAAATTGCATCATTTGGTCTACA-TAGTTTGT-CATTTTGTAAACAAGTTTT-GTTC
* * * * *
33371373 TGTGAATTAAAATCCTATTTAGGTGAGAATT-TTTATCCCTTGATTCTG
383 TGTGAATTAAAAACCTATATACGTGAGAATTGTTTATCCCTTAATTCTA
* * * * * * * *
33371421 GGACGAAC-TT-AAGAATCTGTTAAACTTTTACGCGTTCTTTTATAACTTTGTTTCCATATAGTA
1 GGACGAACTTTCAA-ACT-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATA
* * * * * **
33371484 TTCAAGACGATCCATTCCTTCCAACAATGTTCCAAACATTCCCTCCTTGGGAAATAACATCATTT
64 TTCAAGACGATCCATTCCTTCCAACAATTTTCGAAACATTCCATGCTCGGG-AATCGCATCATTT
* * * *
33371549 GATCTAAATAGTTTGTCATTTTGTAAACAAGTATTGATCTTTGAATTAAAAACTTATATATGTGA
128 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGA
* * ** *
33371614 GAATTGTTTCTCACTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA
193 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACAAGTTCTTTTA
** * * * *
33371679 TAACTTCATTTCCTTAAAACATTCAAGATGATCCATTCCTTCCAGCAATTTTTCGAACATTCCAT
258 TAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCAAGCAATTTTCCAAACATTCCAT
** * * * * *
33371744 GCTCGACAAATGGCACCGTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-TGTCTTTG
323 GCTCGGGAAATTGCATCATTTGGTCTACATAGTTTGTCATTTTGTAAACAAGTTTTGT-TCTGTG
* * * * ** *
33371808 AATTAAAAACTTATATAGGTGAGAATTGTTTCTCGCTCGATTCTT
387 AATTAAAAACCTATATACGTGAGAATTGTTTATCCCTTAATTCTA
* * * * * * *
33371853 GGATGAACTTCCGAACTTGTC-AACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTTAAACATT
1 GGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATATT
* * * * *
33371917 CGAGACAATCCATTCCTTCCAGCAATTTTTTG-AACATTCCATGCTCGGGAAATTGCATCATTTG
66 CAAGACGATCCATTCCTTCCAACAA-TTTTCGAAACATTCCATGCTCGGG-AATCGCATCATTTG
* * * * *
33371981 GTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTTGGTT-TGTGAATTAAAATCCTATTTACGTG
129 GTCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTTCTTTGAATTAAAAACTTATATACGTG
* * * * * * * ***
33372044 AGAATT-TTTATCCCTTGATTCTAGGACGAGC-TTACAAACTTGTCAAACATTTATGCGTTC-TT
192 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTA-GAACTTGTCAAACTTTTACAAGTTCTTT
*
33372106 TATAACTTCGATTCCTTA
256 TATAACTTCGGTTCCTTA
33372124 TAGTATTTGA
Statistics
Matches: 2148, Mismatches: 459, Indels: 401
0.71 0.15 0.13
Matches are distributed among these distances:
365 1 0.00
366 1 0.00
367 6 0.00
368 12 0.01
369 25 0.01
370 9 0.00
371 2 0.00
373 1 0.00
375 8 0.00
376 8 0.00
379 8 0.00
380 6 0.00
381 2 0.00
382 20 0.01
383 6 0.00
384 4 0.00
385 11 0.01
386 17 0.01
387 2 0.00
388 1 0.00
390 1 0.00
391 2 0.00
392 1 0.00
394 1 0.00
395 3 0.00
396 6 0.00
397 2 0.00
398 7 0.00
399 5 0.00
400 9 0.00
401 18 0.01
402 17 0.01
403 11 0.01
404 3 0.00
405 7 0.00
406 13 0.01
407 15 0.01
408 10 0.00
409 4 0.00
410 12 0.01
411 8 0.00
412 15 0.01
414 4 0.00
416 1 0.00
417 2 0.00
418 2 0.00
419 1 0.00
420 1 0.00
421 4 0.00
422 4 0.00
423 24 0.01
424 7 0.00
425 8 0.00
426 13 0.01
427 24 0.01
428 5 0.00
429 26 0.01
430 75 0.03
431 1030 0.48
432 383 0.18
433 31 0.01
434 106 0.05
435 10 0.00
436 8 0.00
437 2 0.00
438 4 0.00
439 12 0.01
440 18 0.01
441 17 0.01
442 3 0.00
443 1 0.00
444 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (431 bp):
GGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATATT
CAAGACGATCCATTCCTTCCAACAATTTTCGAAACATTCCATGCTCGGGAATCGCATCATTTGGT
CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATATACGTGAGAA
TTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACAAGTTCTTTTATAA
CTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCAAGCAATTTTCCAAACATTCCATGCT
CGGGAAATTGCATCATTTGGTCTACATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTGTGAATT
AAAAACCTATATACGTGAGAATTGTTTATCCCTTAATTCTA
Found at i:33371058 original size:216 final size:215
Alignment explanation
Indices: 33370110--33372123 Score: 2144
Period size: 216 Copynumber: 9.4 Consensus size: 215
33370100 AATTATTTTT
* * * *
33370110 GTGAGAATAGTTTCTCTCTT--TCTCTTGGACTAACTTCCAAACTTGTCAAACTTTTACGAGTTC
1 GTGAGAATTGTTTCTCCCTTGAT-TCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * * *
33370173 TTTTATAACTTCGGTTCCTTAAAACATTCAAAACGTTCCATTCCTTCCAGTAATTTTTCGAACAT
65 TTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACAT
* *
33370238 TCCA-CGCTCAGG-AATTGCATCATTTCG-TCTAAGTAGTTT-TCCATTTTGTAAACAGGTTTTG
130 TCCATC-CTCAGGAAATTGCATCATTT-GATCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-
* *
33370299 GTT-TGTGAATTAAAATCCTGTTTAC
191 GTTCTGTGAATTAAAA-CTTATTTAC
* * ** *
33370324 GTGAGAATT-TTTATCCCTTGATTCTAGGACGAACTTATGAACTTGTCAAACTTTTACGTGTTCT
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* ** * * *
33370388 TTTATAACTTCGATTCCTTAAAGTATTC-A-A-G----ATTCCTTCCAACAATGTTCCAAACATT
66 TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATT
* * * *
33370446 CCATCCTCAGAAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTCTAAATAAGTTTTGTTCT
131 CCATCCTCAGGAAATTGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCT
* * *
33370511 TTGAATTAAAAACTTCTATAC
196 GTGAATT-AAAACTTATTTAC
* * * * * *
33370532 GTGAGAATTGTTTCGCTCTGGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCT
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * * *
33370597 TTTCTAACTTCAGTTCCTTAAAACATTCAAGAAGATCCATTCCTTCCAGCAATTTTCCAAACATT
66 TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATT
* * * * *
33370662 CCATGCTCGGGAAATTGTATCATTTGGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTTGGTT
131 CCATCCTCAGGAAATTGCATCATTTGATCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTT
*
33370726 -TGTGAATTAAAATCATATTTAC
194 CTGTGAATTAAAA-CTTATTTAC
* * * * * * * * *
33370748 ATGAGAAAT-TTTATCCCTTAATTCTAGGATGAACTTACGAACTTGTCAAACTTTTACGCGGTCT
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * * ** * * ** *
33370812 TTTATAACTTTGATTCCTTATAGTATTCAAGACGATCCATTCCTTCCAACAATGTTCAAAACTTT
66 TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATT
* * *
33370877 CAATCCTCAGGAAATCGCATCATTTGATCTAAATAGTTTGTCGTTTTGTAAACAAGTTTTGTTCT
131 CCATCCTCAGGAAATTGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCT
* * *
33370942 TTGAATTTAAAACTTATATAT
196 GTGAA-TTAAAACTTATTTAC
* * * *
33370963 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTCT
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* *
33371028 TTTATAACTTCGGTTCCTTAAAACATTCAAGGCGATCCATTCCTTCCAG-TATGTTTCCGAACAT
66 TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAAT-TTTCCGAACAT
* * * * *
33371092 TCCATGCTCAGGAAATCGCATCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
130 TCCATCCTCAGGAAATTGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTC
33371157 TGTGAATTACAAACTTATTTAC
195 TGTGAATTA-AAACTTATTTAC
* * * * * **
33371179 GTGAGAATAGTTCCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTATTAGTTCT
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* *
33371244 TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTTCAGCAATTTTCTGAACATT
66 TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATT
* * * * *
33371309 CCATACTCAGGAAATTGCATCATTTGGTCTAAGTAGTTT-TCCATTTTTTAAACAAGTTTTGGAT
131 CCATCCTCAGGAAATTGCATCATTTGATCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTT
* *
33371373 -TGTGAATTAAAATCCTATTTAG
194 CTGTGAATTAAAA-CTTATTTAC
* * ** * *
33371395 GTGAGAATT-TTTATCCCTTGATTCTGGGACGAACTTAAGAA-TCTGTTAAACTTTTACGCGTTC
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACT-TGTCAAACTTTTACGAGTTC
* * * * ** * * *
33371458 TTTTATAACTTTGTTTCCATATAGTATTCAAGACGATCCATTCCTTCCAACAATGTTCCAAACAT
65 TTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACAT
* ** ** * *
33371523 TCCCTCCTTGGGAAATAACATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTATTGATC
130 TCCATCCTCAGGAAATTGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTC
* * *
33371588 TTTGAATTAAAAACTTATATAT
195 TGTGAATT-AAAACTTATTTAC
* * *
33371610 GTGAGAATTGTTTCTCACTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
** * *
33371675 TTTATAACTTCATTTCCTTAAAACATTCAAGATGATCCATTCCTTCCAGCAATTTTTCGAACATT
66 TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATT
* * * * * *
33371740 CCATGCTC-GACAAATGGCACCGTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-TGT
131 CCATCCTCAG-GAAATTGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGT-T
* * *
33371803 CTTTGAATTAAAAACTTATATAG
194 CTGTGAATT-AAAACTTATTTAC
* * * *
33371826 GTGAGAATTGTTTCTCGCTCGATTCTTGGATGAACTTCCGAACTTGTC-AACTTTTACAAGTTCT
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * * **
33371890 TTTATAACTTCGGTTCCTTTAAACATTCGAGACAATCCATTCCTTCCAGCAATTTTTTGAACATT
66 TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATT
* * * *
33371955 CCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTT-TCCATTTTGTAAACAAGTTTTGGTT
131 CCATCCTCAGGAAATTGCATCATTTGATCTAAATAGTTTGT-CATTTTGTAAACAAGTTTT-GTT
*
33372019 -TGTGAATTAAAATCCTATTTAC
194 CTGTGAATTAAAA-CTTATTTAC
* * * * * * * *
33372041 GTGAGAATT-TTTATCCCTTGATTCTAGGACGAGCTTACAAACTTGTCAAACATTTATGCGTTC-
1 GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
*
33372104 TTTATAACTTCGATTCCTTA
66 TTTATAACTTCGGTTCCTTA
33372124 TAGTATTTGA
Statistics
Matches: 1504, Mismatches: 253, Indels: 86
0.82 0.14 0.05
Matches are distributed among these distances:
207 34 0.02
208 62 0.04
209 73 0.05
210 1 0.00
211 2 0.00
212 2 0.00
213 9 0.01
214 129 0.09
215 502 0.33
216 681 0.45
217 9 0.01
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (215 bp):
GTGAGAATTGTTTCTCCCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
TTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCCGAACATT
CCATCCTCAGGAAATTGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTTCT
GTGAATTAAAACTTATTTAC
Found at i:33371381 original size:647 final size:644
Alignment explanation
Indices: 33370149--33372130 Score: 2663
Period size: 647 Copynumber: 3.1 Consensus size: 644
33370139 CTAACTTCCA
* * * ** * *
33370149 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAAACGTTCCAT
1 AACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACGATCCAT
** * * * *
33370214 TCCTTCCAGTAATTTTTCGAACATTCCA-CGCTCAGG-AATTGCATCATTTCG-TCTAAGTAGTT
66 TCCTTCCAACAA-TGTTCAAACATTCCATC-CTCAGGAAATAGCATCATTT-GATCTAAATAGTT
* * * * * * *
33370276 T-TCCATTTTGTAAACAGGTTTTGGTT-TGTGAA-TTAAAATCCTGTTTACGTGAGAATT-TTTA
128 TGT-CATTTTGTAAACAAGTTTT-GTTCTTTGAATTTAAAA-CTTATATATGTGAGAATTGTTTC
* * * *
33370337 TCCCTTGATTCTAGGACGAACTTAT-GAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTCGA
190 TCACTTGGTTCTTGGACGAACTT-TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA
** * * *
33370401 TTCCTTAAAGTATTCAA-G----ATTCCTTCCAACAATG-TTCCAAACATTCCATCCTCAGAAAA
254 TTCCTTAAAACATTCAAGGATCCATTCCTTCC-AGAATGTTTCCGAACATTCCATGCTCAGAAAA
* * *
33370460 TCGCATCATTTGATCTAAATAGTTTGTCATTTTCTAAATAAGTTTTGTTCTTTGAATTAAAAACT
318 TCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * *
33370525 TCTATACGTGAGAATTGTTTCGCTCTGGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTAC
383 TATATACGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * *
33370590 GAGTTCTTTTCTAACTTCAGTTCCTTAAAACATTCAAGAAGATCCATTCCTTCCAGCAATTTTCC
448 AAGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCT
* *
33370655 AAACATTCCATGCTCGGGAAATTGTATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAGTT
513 GAACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAGTT
* * * * *
33370720 TTGGTTTGTGAATTAAAATCATATTTACATGAGAAATTTTATCCCTTAATTCTAGGATGAACTTA
578 TTGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAACTTA
33370785 CG
643 CG
* *
33370787 AACTTGTCAAACTTTTACGCGGTCTTTTATAACTTTGATTCCTTATAGTATTCAAGACGATCCAT
1 AACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACGATCCAT
* * *
33370852 TCCTTCCAACAATGTTCAAAACTTTCAATCCTCAGGAAATCGCATCATTTGATCTAAATAGTTTG
66 TCCTTCCAACAATGTTC-AAACATTCCATCCTCAGGAAATAGCATCATTTGATCTAAATAGTTTG
* *
33370917 TCGTTTTGTAAACAAGTTTTGTTCTTTGAATTTAAAACTTATATATGTGAGAATTGTTTCTCTCT
130 TCATTTTGTAAACAAGTTTTGTTCTTTGAATTTAAAACTTATATATGTGAGAATTGTTTCTCACT
* *
33370982 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTT
195 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTT
* *
33371047 AAAACATTCAAGGCGATCCATTCCTTCCAGTATGTTTCCGAACATTCCATGCTCAGGAAATCGCA
260 AAAACATTCAA-G-GATCCATTCCTTCCAGAATGTTTCCGAACATTCCATGCTCAGAAAATCGCA
* * * * *
33371112 TCATTTCATCGAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTACAAACTTATTT
323 TCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATAT
* * * * * **
33371177 ACGTGAGAATAGTTCCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTATTAGTT
388 ACGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAAGTT
*
33371242 CTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTTCAGCAATTTTCTGAACA
453 CTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCTGAACA
* * * *
33371307 TTCCATACTCAGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTTTAAACAAGTTTTGGA
518 TTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAGTTTTGGT
* * *
33371372 TTGTGAATTAAAATCCTATTTAGGTGAGAATTTTTATCCCTTGATTCTGGGACGAACTTAAG
583 TTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAACTTACG
* * * *
33371434 AA-TCTGTTAAACTTTTACGCGTTCTTTTATAACTTTGTTTCCATATAGTATTCAAGACGATCCA
1 AACT-TGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACGATCCA
* ** *
33371498 TTCCTTCCAACAATGTTCCAAACATTCCCTCCTTGGGAAATAACATCATTTGATCTAAATAGTTT
65 TTCCTTCCAACAATGTT-CAAACATTCCATCCTCAGGAAATAGCATCATTTGATCTAAATAGTTT
* * *
33371563 GTCATTTTGTAAACAAGTATTGATCTTTGAATTAAAAACTTATATATGTGAGAATTGTTTCTCAC
129 GTCATTTTGTAAACAAGTTTTGTTCTTTGAATTTAAAACTTATATATGTGAGAATTGTTTCTCAC
* *
33371628 TTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-ATTTCC
194 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCC
*
33371692 TTAAAACATTCAAGATGATCCATTCCTTCCAGCAAT-TTTTCGAACATTCCATGCTC-GACAAAT
258 TTAAAACATTCAAG--GATCCATTCCTTCCAG-AATGTTTCCGAACATTCCATGCTCAGA-AAAT
* * * * *
33371755 GGCACCGTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTGAATTAAAAACTT
319 CGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * *
33371820 ATATAGGTGAGAATTGTTTCTCGCTCGATTCTTGGATGAACTTCCGAACTTGTC-AACTTTTACA
384 ATATACGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACA
* * * *
33371884 AGTTCTTTTATAACTTCGGTTCCTTTAAACATTCGAGACAATCCATTCCTTCCAGCAATTTTTTG
449 AGTTCTTTTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCTG
33371949 AACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAGTTT
514 AACATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAGTTT
*
33372014 TGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAGCTTAC
579 TGGTTTGTGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAACTTAC
*
33372079 A
644 G
* *
33372080 AACTTGTCAAACATTTATGCGTTC-TTTATAACTTCGATTCCTTATAGTATT
1 AACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATT
33372131 TGATATGGCC
Statistics
Matches: 1180, Mismatches: 140, Indels: 41
0.87 0.10 0.03
Matches are distributed among these distances:
637 4 0.00
638 83 0.07
639 61 0.05
640 81 0.07
643 1 0.00
645 24 0.02
646 216 0.18
647 707 0.60
648 3 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (644 bp):
AACTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAGACGATCCAT
TCCTTCCAACAATGTTCAAACATTCCATCCTCAGGAAATAGCATCATTTGATCTAAATAGTTTGT
CATTTTGTAAACAAGTTTTGTTCTTTGAATTTAAAACTTATATATGTGAGAATTGTTTCTCACTT
GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTA
AAACATTCAAGGATCCATTCCTTCCAGAATGTTTCCGAACATTCCATGCTCAGAAAATCGCATCA
TTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATATACG
TGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTT
TTATAACTTCGGTTCCTTAAAACATTCAAGACGATCCATTCCTTCCAGCAATTTTCTGAACATTC
CATGCTCGGGAAATTGCATCATTTGGTCTAAGTAGTTTTCCATTTTGTAAACAAGTTTTGGTTTG
TGAATTAAAATCCTATTTACGTGAGAATTTTTATCCCTTGATTCTAGGACGAACTTACG
Found at i:33375142 original size:5 final size:6
Alignment explanation
Indices: 33375127--33375152 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
33375117 AAATAGTGAA
33375127 AAAAAG AAAAAG AAAAAG AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AA
33375153 GTAGAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:33375920 original size:26 final size:26
Alignment explanation
Indices: 33375884--33375942 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
33375874 GCATTGCGCC
*
33375884 CAGAATTGTCACTGCAA-GAACTTGTT
1 CAGAATTGTCACT-AAAGGAACTTGTT
33375910 CAGAATTGTCACTAAAGGAACTTGTT
1 CAGAATTGTCACTAAAGGAACTTGTT
*
33375936 CAAAATT
1 CAGAATT
33375943 ATCAATGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 2 0.07
26 28 0.93
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (26 bp):
CAGAATTGTCACTAAAGGAACTTGTT
Found at i:33380180 original size:4 final size:4
Alignment explanation
Indices: 33380173--33380203 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
33380163 ACAATATATA
*
33380173 TATG TATG TATG TACG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
33380204 ATTACTATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.48
Consensus pattern (4 bp):
TATG
Found at i:33383405 original size:194 final size:192
Alignment explanation
Indices: 33383069--33383708 Score: 783
Period size: 194 Copynumber: 3.3 Consensus size: 192
33383059 GAAACTGATG
* * * * *
33383069 CGATGGCTGAGGTACAGCATATGTTGCAAGTCATTGACAGCTCGTGTGAGCAGCATCGTGAGTCA
1 CGATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCATGAGT-A
* * * * * * *
33383134 GGAAAATGAGAAATG-AATCC-AAGTATGGATTACAGGCTCTACGATGG-TTGAAAGTTATGCAT
65 -GAAAAAGAGATATGAAATCCTAA-AATGGATTACAGGCCCTACGATGGCTGGGAA-TTATGCTT
* *
33383196 -AAGTGCATATTCTCGACT-GCTCATGTGAGCAGCATCGTTAGGGAACAATTATATGCACAGATA
127 GAA-TGCATATTCTCGA-TAGCTCGTGTGAGCAGCATCGTTAGGG-ATAATTATATG-ACAGATA
33383259 CAGTAT
188 C-GTAT
*
33383265 CGAT-GCTGAGGTACCGCATATATTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCATGAGTAG
1 CGATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCATGAGTAG
*
33383329 AAAAAGAGATATGAAATCCTAAAATGGATTACAAGCCCTACGATGGCTGGGAATTATGCTTGAAT
66 AAAAAGAGATATGAAATCCTAAAATGGATTACAGGCCCTACGATGGCTGGGAATTATGCTTGAAT
* * *
33383394 GCATATTCTCGATAGCTCGTGTGAGCAGCATCGTTAAGGGATAGTT-TACAGATAGATATCGTAT
131 GCATATTCTCGATAGCTCGTGTGAGCAGCATCGTT-AGGGATAATTATA-TGACAGATA-CGTAT
* * * *
33383458 CGATGGCTGAGGTATCGCATATGTTACGAGTCCTCGACAGCTTGTGTGAGCAGCATCATGAGTCG
1 CGATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCATGAGTAG
*
33383523 AAAAAGAGATATGAAATCCTAAAATGGATTACAGGCCCTACGATGGCTGGGATTTATGCTTGAAT
66 AAAAAGAGATATGAAATCCTAAAATGGATTACAGGCCCTACGATGGCTGGGAATTATGCTTGAAT
* * *
33383588 GCATATTCTCGATAGCTCGTGTGAGCAGCATCGTTAGGGGATAGTTTACAT-ACAAATACCGTAT
131 GCATATTCTCGATAGCTCGTGTGAGCAGCATCGTTA-GGGATA-ATTATATGACAGATA-CGTAT
* * * ** * *
33383652 CGATGGCTGAGGTGCCACGTATGTTGATAGTCCTCGATAGCTCGTGTGAGCAACATC
1 CGATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATC
33383709 GGGTACTGGT
Statistics
Matches: 390, Mismatches: 42, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
193 30 0.08
194 289 0.74
195 66 0.17
196 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (192 bp):
CGATGGCTGAGGTACCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCATGAGTAG
AAAAAGAGATATGAAATCCTAAAATGGATTACAGGCCCTACGATGGCTGGGAATTATGCTTGAAT
GCATATTCTCGATAGCTCGTGTGAGCAGCATCGTTAGGGATAATTATATGACAGATACGTAT
Found at i:33386636 original size:15 final size:15
Alignment explanation
Indices: 33386617--33386681 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
33386607 GAGTGTTCAT
*
33386617 AACACCAGTGTTTGC
1 AACACCAGTGTTCGC
* *
33386632 TACACGAGTGTTCGC
1 AACACCAGTGTTCGC
*
33386647 AACATCAGTGTTCGC
1 AACACCAGTGTTCGC
** *
33386662 AACATGAGTGCTCGC
1 AACACCAGTGTTCGC
33386677 AACAC
1 AACAC
33386682 TAATGCTCAC
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (15 bp):
AACACCAGTGTTCGC
Found at i:33386671 original size:30 final size:30
Alignment explanation
Indices: 33386605--33386681 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 30
33386595 CTTCATCCAT
** * *
33386605 ACGAGTGTTCATAACACCAGTGTTTGCTAC
1 ACGAGTGTTCGCAACACCAGTGTTCGCAAC
*
33386635 ACGAGTGTTCGCAACATCAGTGTTCGCAAC
1 ACGAGTGTTCGCAACACCAGTGTTCGCAAC
* *
33386665 ATGAGTGCTCGCAACAC
1 ACGAGTGTTCGCAACAC
33386682 TAATGCTCAC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (30 bp):
ACGAGTGTTCGCAACACCAGTGTTCGCAAC
Found at i:33393147 original size:48 final size:46
Alignment explanation
Indices: 33393106--33393237 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 46
33393096 AATGGAAGGC
* *
33393106 ATTTAACAAAGATGCGTTTAACAAACAAAACAGTTAATAATGCA-G
1 ATTTAACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGG
*
33393151 ATTACTAAACAAAGATGCATTTAACAAACAAAACACTTAATGATGCA-G
1 ATT--T-AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGG
33393199 ATTATTAAACAAAGATGCATTTAACAAA-AAAA-ACTTAAT
1 A-T-TT-AACAAAGATGCATTTAACAAACAAAACACTTAAT
33393238 GAAGCATAAA
Statistics
Matches: 79, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
45 3 0.04
46 7 0.09
47 5 0.06
48 62 0.78
49 1 0.01
50 1 0.01
ACGTcount: A:0.52, C:0.14, G:0.10, T:0.25
Consensus pattern (46 bp):
ATTTAACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGG
Found at i:33399706 original size:48 final size:48
Alignment explanation
Indices: 33399642--33399772 Score: 181
Period size: 48 Copynumber: 2.7 Consensus size: 48
33399632 CAAGGCATTT
* *
33399642 AACAAAGATGCGTTTAACAAACAAAACAGTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTA
* * * * *
33399690 ATCAAATATGCATTTAACAAACAAAACACTTATTGATGCAGATTATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTA
*
33399738 AACAAAGATGCATTTAACAAAAAAAAACACTTAAT
1 AACAAAGATGCATTTAAC-AAACAAAACACTTAAT
33399773 GAAGCATAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
48 57 0.80
49 14 0.20
ACGTcount: A:0.51, C:0.15, G:0.09, T:0.25
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGATTACTA
Found at i:33406321 original size:28 final size:28
Alignment explanation
Indices: 33406290--33406343 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
33406280 AAAGAACAGA
*
33406290 AAAAGAAATA-GAAATAGAAAAATGAATG
1 AAAAGAAAAATGAAATA-AAAAATGAATG
*
33406318 AAAAGAAAAATGAGATAAAAAATGAA
1 AAAAGAAAAATGAAATAAAAAATGAA
33406344 AGAGTGTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (28 bp):
AAAAGAAAAATGAAATAAAAAATGAATG
Found at i:33406337 original size:16 final size:16
Alignment explanation
Indices: 33406287--33406330 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 16
33406277 TGCAAAGAAC
33406287 AGAAAAA-GAAATAGAAA
1 AGAAAAATG-AAT-GAAA
33406304 TAGAAAAATGAATGAAA
1 -AGAAAAATGAATGAAA
33406321 AGAAAAATGA
1 AGAAAAATGA
33406331 GATAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 10 0.40
17 4 0.16
18 10 0.40
19 1 0.04
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.11
Consensus pattern (16 bp):
AGAAAAATGAATGAAA
Found at i:33410252 original size:20 final size:20
Alignment explanation
Indices: 33410215--33410309 Score: 95
Period size: 20 Copynumber: 4.7 Consensus size: 20
33410205 TTGAAATAAT
*
33410215 TTTAAAATCAAGTTAAAATGA
1 TTTAAAA-CAAGTCAAAATGA
33410236 TTTAAAACAAGTCAAAATGA
1 TTTAAAACAAGTCAAAATGA
* * *
33410256 TTTCAACCAAGTCAAAATCA
1 TTTAAAACAAGTCAAAATGA
*
33410276 TTCTAACAC-A-TCAAAATGA
1 TT-TAAAACAAGTCAAAATGA
*
33410295 TTTTCAAACAAGTCA
1 -TTTAAAACAAGTCA
33410310 GAATTGCTTG
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
19 12 0.20
20 35 0.58
21 13 0.22
ACGTcount: A:0.48, C:0.16, G:0.07, T:0.28
Consensus pattern (20 bp):
TTTAAAACAAGTCAAAATGA
Found at i:33419618 original size:12 final size:12
Alignment explanation
Indices: 33419598--33419627 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
33419588 TATTTTACGT
*
33419598 TTATTATTATTA
1 TTATAATTATTA
33419610 TTATAATTATTA
1 TTATAATTATTA
33419622 TTATAA
1 TTATAA
33419628 AATTCAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATAATTATTA
Found at i:33419972 original size:16 final size:16
Alignment explanation
Indices: 33419952--33419983 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
33419942 TTATAATTTG
33419952 AAAAAATAATAAAAAAT
1 AAAAAA-AATAAAAAAT
33419969 AAAAAAAATAAAAAA
1 AAAAAAAATAAAAAA
33419984 ATATTTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAAAAAATAAAAAAT
Found at i:33419974 original size:9 final size:9
Alignment explanation
Indices: 33419952--33419984 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
33419942 TTATAATTTG
33419952 AAAAAATAA
1 AAAAAATAA
33419961 TAAAAAATAA
1 -AAAAAATAA
33419971 AAAAAATAA
1 AAAAAATAA
33419980 AAAAA
1 AAAAA
33419985 TATTTATAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAATAA
Found at i:33421032 original size:26 final size:26
Alignment explanation
Indices: 33420999--33421053 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
33420989 AATATCCAGT
33420999 GTGAATGAAATTCTATGGGGTGCAAA
1 GTGAATGAAATTCTATGGGGTGCAAA
33421025 GTGAATGAAATTCTATGGGGTGCAAA
1 GTGAATGAAATTCTATGGGGTGCAAA
33421051 GTG
1 GTG
33421054 TGAATCCGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.07, G:0.33, T:0.27
Consensus pattern (26 bp):
GTGAATGAAATTCTATGGGGTGCAAA
Found at i:33434692 original size:12 final size:14
Alignment explanation
Indices: 33434671--33434711 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 14
33434661 CATAAAATCT
*
33434671 TCTTCATTTTCTT-
1 TCTTCCTTTTCTTC
33434684 T-TTCCTTTTCTTC
1 TCTTCCTTTTCTTC
33434697 TCTTCCTTCTTCTTC
1 TCTTCCTT-TTCTTC
33434712 AACACCCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 10 0.42
13 2 0.08
14 6 0.25
15 6 0.25
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (14 bp):
TCTTCCTTTTCTTC
Found at i:33445142 original size:15 final size:15
Alignment explanation
Indices: 33445122--33445152 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33445112 ATGTGTGTCT
*
33445122 GCAACATGAGTGCTC
1 GCAACATCAGTGCTC
33445137 GCAACATCAGTGCTC
1 GCAACATCAGTGCTC
33445152 G
1 G
33445153 AAAGGTCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (15 bp):
GCAACATCAGTGCTC
Found at i:33452842 original size:214 final size:216
Alignment explanation
Indices: 33452436--33453451 Score: 1123
Period size: 214 Copynumber: 4.7 Consensus size: 216
33452426 TTGCATCAAA
* *
33452436 AAAAGAACTCGTAAATGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGAAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * *
33452501 TACGCAAATAAATTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
33452566 AATGATGCAATTTCTCGAGCTTGGAATGTTCAG--AAATTGGTCGAAGGAATGGATCATCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAATT-GTCGAAGGAATGGATCATCTTGAA
*
33452629 TACTCTCAAGAATCGAAGTTAT
195 TACTCTCAAGAATCAAAGTTAT
* * * * * * *
33452651 AAAATAAATC-AAAATGTTTGACAAGTTCGGAAGTTCATCTAAGAACTAAGTGAGAAAAAATTCT
1 AAAAGAACTCGAAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
33452715 CACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT-GACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * *
33452779 AATGACT-CGATTTCCCAAGAATGGAATGTTCAG-AAAATCTGTCGAATGAGA-GGATCGTCTTG
131 AATGA-TGCGATTTCCCGAGCATGGAATGTTCAGAAAAAT-TGTCGAAGGA-ATGGATCATCTTG
* *
33452841 AATACTCAT-ATGAAT-AGAAGTTTT
193 AATACTC-TCAAGAATCA-AAGTTAT
* * * * * * * * * * * *
33452865 AAAAGAACTAGTAAATATTTCAAAAGTTTGAAAGATCATCCAAGAACTAACAGAGAAACAACTCT
1 AAAAGAACTCGAAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * **
33452930 CACGTAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAAAAAATTT-GACC
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AAACTATTTAGACC
* *
33452994 AAACGATGCGATTTCCCGAGCATGGAATGTT-TGAAAAATTTGTCGAAGGAATGGATCATCTTGA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAA-TTGTCGAAGGAATGGATCATCTTGA
*
33453058 ATACTCTCAAGAACCAAAGTTAT
194 ATACTCTCAAGAATCAAAGTTAT
* * * * *
33453081 CACAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTCGTTCAAGAA-CAAGAGAGAAA-AATTCT
1 AAAAGAACTCGAAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * **
33453144 CACGTAAATAAGTTTTTAATTTAATGATCAAAAGTTGTCGACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* ** * * * * ** *
33453209 AATAATTTGGTTTCCCGAGCACGGAATGTTC-GAAAAATTGCTCAAAAGAATGGATCGCCTTGAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAATTG-TCGAAGGAATGGATCATCTTGAA
* * *
33453273 TACT-TTATGGAA-CTAAAGTAAT
195 TACTCTCA-AGAATC-AAAGTTAT
* * *
33453295 AAAAGAATTTCTAAAAT-TTAGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
1 AAAAGAA-CTCGAAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * *
33453359 TCACGTAAATAAGTTTTTAATTCAATGACCATAGGTT-TATTACAAAATGACAAACTATTTAGAC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT-TTACAAAATGACAAACTATTTAGAC
* *
33453423 CAAATGATGCGATTTTCCGAGCATCGAAT
129 CAAATGATGCGATTTCCCGAGCATGGAAT
33453452 ATTCGGCCAA
Statistics
Matches: 668, Mismatches: 110, Indels: 45
0.81 0.13 0.05
Matches are distributed among these distances:
213 44 0.07
214 295 0.44
215 131 0.20
216 196 0.29
217 2 0.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (216 bp):
AAAAGAACTCGAAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
AATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAATTGTCGAAGGAATGGATCATCTTGAAT
ACTCTCAAGAATCAAAGTTAT
Found at i:33453366 original size:430 final size:431
Alignment explanation
Indices: 33452436--33453451 Score: 1229
Period size: 430 Copynumber: 2.4 Consensus size: 431
33452426 TTGCATCAAA
* *
33452436 AAAAGAACT-CGTAAATGTTT--GACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
1 AAAAGAACTAC-TAAATATTTCAGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * * * * *
33452498 TCTTACGCAAATAAATTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAATTATTTAGA
65 TCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAAATATTTAGA
* * * *
33452563 CCAAATGATGCAATTTCTCGAGCTTGGAATGTTCAGAAATTGGTCGAAGGAATGGATCATCTTGA
130 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGGTCGAAGGAATGGATCATCTTGA
* * * *
33452628 ATACTCTCAAGAATCGAAGTTATAAAATAAATCAAAATGTTTGACAAGTTCGGAAGTTCATCTAA
195 ATACTCTCAAGAACCAAAGTTATAAAAGAAATCAAAATGTTTGACAAGTTCGAAAGTTCATCTAA
* **
33452693 GAACTAAGTGAGAAAAAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACA
260 GAACTAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTCGACA
* * *
33452758 AAATGACAAACTATTTGACCAAATGACTCGATTTCCCAAGAATGGAATGTTCAGAAAATCTGTCG
325 AAATGACAAACTATTTGACCAAATAACTCGATTTCCCAAGAACGGAATGTTCAGAAAATCTGTCA
* * **
33452823 AATGAGAGGATCGTCTTGAATACTCATATGAATAGAAGTTTT
390 AAAGAGAGGATCGCCTTGAATACTCATATGAATAGAAGTAAT
* * * * * * * *
33452865 AAAAGAACTAGTAAATATTTCA-A-AAGTTTGAAAGATCATCCAAGAACTAACAGAGAAACAACT
1 AAAAGAACTACTAAATATTTCAGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
*
33452928 CTCACGTAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAAAAAATTT-GA
66 CTCACGTAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGAC-AAAATATTTAGA
* * *
33452992 CCAAACGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTTGTCGAAGGAATGGATCATCTTG
130 CCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAATTGGTCGAAGGAATGGATCATCTTG
* * * * *
33453057 AATACTCTCAAGAACCAAAGTTATCACAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTCGT-T
194 AATACTCTCAAGAACCAAAGTTATAAAAGAAATC-AAAATGTTTGACAAGTTCGAAAGTTCATCT
* * * *
33453121 CAAGAAC-AAGAGAG-AAAAATTCTCACGTAAATAAGTTTTTAATTTAATGATCAAAAGTTGTCG
258 -AAGAACTAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTCG
* * * * *
33453184 ACAAAATGACAAACTATTTAGACCAAATAATTTGGTTTCCCGAGCACGGAATGTTC-GAAAAAT-
322 ACAAAATGACAAACTATTT-GACCAAATAACTCGATTTCCCAAGAACGGAATGTTCAG-AAAATC
* *
33453247 TGCTCAAAAGA-ATGGATCGCCTTGATTACT-TTATGGAACTA-AAGTAAT
385 TG-TCAAAAGAGA-GGATCGCCTTGAATACTCATAT-GAA-TAGAAGTAAT
* *
33453295 AAAAGAATTTCTAAA-ATTT-AGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
1 AAAAGAACTACTAAATATTTCAGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * ** * *
33453358 CTCACGTAAATAAGTTTTTAATTCAATGACCATAGGTTT-ATTACAAAATGACAAACTATTTAGA
66 CTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAAATTTGTTTACAAAATGACAAAATATTTAGA
* *
33453422 CCAAATGATGCGATTTTCCGAGCATCGAAT
130 CCAAATGATGCGATTTCCCGAGCATGGAAT
33453452 ATTCGGCCAA
Statistics
Matches: 496, Mismatches: 74, Indels: 33
0.82 0.12 0.05
Matches are distributed among these distances:
428 1 0.00
429 206 0.42
430 250 0.50
431 39 0.08
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (431 bp):
AAAAGAACTACTAAATATTTCAGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
CTCACGTAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAAATATTTAGAC
CAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGGTCGAAGGAATGGATCATCTTGAA
TACTCTCAAGAACCAAAGTTATAAAAGAAATCAAAATGTTTGACAAGTTCGAAAGTTCATCTAAG
AACTAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTCGACAA
AATGACAAACTATTTGACCAAATAACTCGATTTCCCAAGAACGGAATGTTCAGAAAATCTGTCAA
AAGAGAGGATCGCCTTGAATACTCATATGAATAGAAGTAAT
Found at i:33453554 original size:124 final size:124
Alignment explanation
Indices: 33453329--33453561 Score: 387
Period size: 124 Copynumber: 1.9 Consensus size: 124
33453319 AGTTCGGAAG
* * * *
33453329 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGACCATAGG
1 TTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
33453394 TTTATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATCGAATA
66 TTTATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATCGAATA
*
33453453 TTCGGCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
1 TTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
**
33453518 TTGT-TTACAAAATGACAAACTATTTTTACCAAATGATGCGATTT
66 TT-TATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
33453562 CCCTAGAATG
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
124 100 0.99
125 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (124 bp):
TTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
TTTATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATCGAATA
Found at i:33454410 original size:984 final size:980
Alignment explanation
Indices: 33452470--33454421 Score: 2456
Period size: 984 Copynumber: 2.0 Consensus size: 980
33452460 AGTTCTGAAG
* *
33452470 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGCAAATAAATTTTTAATTCAAAGACCAAAAG
1 TTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAATTTTTAATTCAAAGACCAAAAG
* * ** *
33452535 TTGTTTACAAAATGACAAATTATTTAGACCAAATGATGCAATTTCTCGAGCTTGGAATGTTCAGA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGAATGGAATGTTCAAA
* * *
33452600 AATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAAGAATCGAAGTTATAAAATAAATCAAAA
131 AATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAAGAACCAAAGTTATAAAAGAAATCAAAA
* * **
33452665 TGTTTGACAAGTTCGGAAGTTCATCTAAGAACTAAGTGAGAAAAAATTCTCACGTAAATAAGTTT
196 TGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAAAGAGAAAAAATTCTCACGTAAATAAGTTT
* *
33452730 TAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGACCAAATGACTCGATTTCCC
261 TAAATTCAAAGACCAAAAGTTATTTACAAAATAACAAACTATTTGACCAAATGACTCGATTTCCC
* * *
33452795 AAGAATGGAATGTTCAGAAAATCTGTCGAATGAGAGGATCGTCTTGAATACTCATATGAATAGAA
326 AAGAATGGAATGTTCAGAAAATCTGTCGAAGGAGAGGATCGTCTTGAACACTCATAGGAATAGAA
* * * * * *
33452860 GTTTTAAAAGAACTAGTAAATATTTCAAAAGTTTGAAAGATCATCCAAGAACTAACAGAGAAACA
391 GATATAAAAGAACTAGAAAATATTTCAAAAGTTCGAAAGATCATCCAAGAACCAACAAAGAAACA
* * * *
33452925 ACTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAAAAAATTT
456 ACTCTCACGTAAATAAGTTTTTAATTAAAAAACAAAAAGTCGTTTACAAAATGACAAAAAAATTT
* * *
33452990 GACCAAACGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTTGTCGAAGGAATGGATCATCT
521 GACCAAACGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCACCT
* *
33453055 TGAATACTCTCAAGAACCAAAGTTATCACAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTCGT
586 TGAATACTCTCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTCGT
* * * * *
33453120 TCAAGAACAAGAGAGAAAAATTCTCACGTAAATAAGTTTTTAATTTAATGATCAAAAGTTGTCGA
651 CCAAGAACAAGAGAGAAAAATTATCACGTAAATAA---TTTAATTCAAAGACCAAAAGTTGTCGA
** ** ** *
33453185 CAAAATGACAAACTATTTAGACCAAATAATTTGGTTTCCCGAGCACGGAATGTTCGAAAAATTGC
713 CAAAATGACAAACTATTTAGACCAAATAATGCGACTTCCCGAGCACGGAATACTCGAAAAATTAC
* * *
33453250 TCAAAAGAATGGATCGCCTTGATTACTTTATGGAACTAAAGTAATAAAAGAATTTCTAAAATTTA
778 TCAAAAGAATGGATCGCCTTGAATACTTTAAGGAACTAAAGTAATAAAAGAATCTCTAAAATTTA
* ** *
33453315 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
843 GACAAGATCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTTAAT
** * * * *
33453380 TCAATGACCATAGGTTTATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGC
908 TCAAAAACCAAAAGTTTATTACAAAATGAAAAACTATCTAGACCAAATGATGCGATTTTCCGAGC
33453445 ATCGAATA
973 ATCGAATA
* * *
33453453 TTCGGCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
1 TTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAATTTTTAATTCAAAGACCAAAAG
** * * *
33453518 TTGTTTACAAAATGACAAACTATTTTTACCAAATGATGCGATTTCCCTAGAATGGAATTTTCGAA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGAATGGAATGTTC-AA
* ** * * *
33453583 AAATTGGTCGAAGGAATGGGTTGTCTTGAATATTCTCAGGAACCAAAGTTATAAAAGAACTCATA
130 AAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAAGAACCAAAGTTATAAAAGAAATCA-A
* * * *
33453648 AATGTTTGACAAGTTCGGAAGTTCGTCCAATAACCAAAAGAGAAACAATTCTCATGTAAATAAGT
194 AATGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAAAGAGAAAAAATTCTCACGTAAATAAGT
* ** * * *
33453713 TTTTAATTCAAAGGGCACAAGTTAATTTACAAAATAACAAACTTTTTAGACCAAATGA-TGCTAT
259 TTTAAATTCAAAGACCAAAAGTT-ATTTACAAAATAACAAACTATTT-GACCAAATGACT-CGAT
*** * ** * * *
33453777 TTCCTGGGCATGGAATGTTTTGAAAATTTGAT-GAAGGA-ATGGATCGTCTTTAACACT-TTAAG
321 TTCCCAAGAATGGAATGTTCAGAAAATCTG-TCGAAGGAGA-GGATCGTCTTGAACACTCAT-AG
* * * * * *
33453839 GAACT-GAAGATATAAAAGAACTCA-AAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA
383 GAA-TAGAAGATATAAAAGAACT-AGAAAATATTTCAAAAGTTCGAAAGATCATCCAAGAACCAA
* * * *
33453902 CAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAAACCAAGAGTCGTTTACCAAATGAC
446 CAAAGAAACAACTCTCACGTAAATAAGTTTTTAATTAAAAAACAAAAAGTCGTTTACAAAATGAC
*** * * * *
33453967 -AAACTTTTTAGACCAAATGATGCGA-TTCCTGAGCATGTAATGTTCGCAAAATTGGTCGAAGGA
511 AAAAAAATTT-GACCAAACGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGA
* * * *
33454030 ATGGATCGCCTTGCATTCTCTCAAGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTT
575 ATGGATCACCTTGAATACTCTCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTT
* * *
33454095 TGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTATCACGTAAATAA-TTAATTCAAAGACCAA
640 CGAAAGTTCGTCCAAGAA-CAAGAGAGAAA-AATTATCACGTAAATAATTTAATTCAAAGACCAA
** * * *
33454159 AAGTTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGACTTCCCGAGCATGGAATACTC
703 AAGTTGTCGACAAAATGACAAACTATTTAGACCAAATAATGCGACTTCCCGAGCACGGAATACTC
* * * *
33454224 GAAAAATTACTCAAAGGAATGGATCGTCTTTAATACTTTAAGGAA-TCAAAGTTATAAAAGAA-C
768 GAAAAATTACTCAAAAGAATGGATCGCCTTGAATACTTTAAGGAACT-AAAGTAATAAAAGAATC
* *
33454287 TCGT-AAATGTTTGACAAGATCAAAAGTTCGTCCAAGATCCAAGAGAGAAACAATTCCCACGTAA
832 TC-TAAAAT-TTAGACAAGATCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCCCACGTAA
* *
33454351 GTAAGTTTTTAATTCAAAAACCAAAAGTTGT-TTACAAGATGAAAAACTACTCT-GACCAAATGA
895 ATAAGTTTTTAATTCAAAAACCAAAAGTT-TATTACAAAATGAAAAACTA-TCTAGACCAAATGA
33454414 TGCGATTT
958 TGCGATTT
33454422 CTCAAGAATG
Statistics
Matches: 822, Mismatches: 129, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
983 120 0.15
984 283 0.34
985 80 0.10
986 134 0.16
987 186 0.23
988 19 0.02
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (980 bp):
TTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAATTTTTAATTCAAAGACCAAAAG
TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGAATGGAATGTTCAAA
AATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAAGAACCAAAGTTATAAAAGAAATCAAAA
TGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAAAGAGAAAAAATTCTCACGTAAATAAGTTT
TAAATTCAAAGACCAAAAGTTATTTACAAAATAACAAACTATTTGACCAAATGACTCGATTTCCC
AAGAATGGAATGTTCAGAAAATCTGTCGAAGGAGAGGATCGTCTTGAACACTCATAGGAATAGAA
GATATAAAAGAACTAGAAAATATTTCAAAAGTTCGAAAGATCATCCAAGAACCAACAAAGAAACA
ACTCTCACGTAAATAAGTTTTTAATTAAAAAACAAAAAGTCGTTTACAAAATGACAAAAAAATTT
GACCAAACGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCACCT
TGAATACTCTCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTCGT
CCAAGAACAAGAGAGAAAAATTATCACGTAAATAATTTAATTCAAAGACCAAAAGTTGTCGACAA
AATGACAAACTATTTAGACCAAATAATGCGACTTCCCGAGCACGGAATACTCGAAAAATTACTCA
AAAGAATGGATCGCCTTGAATACTTTAAGGAACTAAAGTAATAAAAGAATCTCTAAAATTTAGAC
AAGATCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTTAATTCA
AAAACCAAAAGTTTATTACAAAATGAAAAACTATCTAGACCAAATGATGCGATTTTCCGAGCATC
GAATA
Found at i:33454461 original size:216 final size:216
Alignment explanation
Indices: 33453453--33463198 Score: 9748
Period size: 216 Copynumber: 45.4 Consensus size: 216
33453443 GCATCGAATA
* *
33453453 TTCGGCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
** * * * *
33453518 TTGTTTACAAAATGACAAACTATTTTTACCAAATGATGCGATTTCCCTAGAATGGAATTTTC-GA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
* * * * * *
33453582 AAAATTGGTCGAAGGAATGGGTTGTCTTGAATA-TTCTCAGGAACCAAAGTTATAAAAGAACTCA
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAATCGAAGTTATAAAAGAACTCG
33453646 TAAATGTTTGACAAGTTCGGAAG
194 TAAATGTTTGACAAGTTCGGAAG
* * * ** *
33453669 TTCGTCCAATAACCAAAAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGGGCACAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * **
33453734 TTAATTTACAAAATAACAAACTTTTTAGACCAAATGATGCTATTTC-CTGGGCATGGAATGTTTT
66 TT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCA
* * * *
33453798 GAAAATTTGAT-GAAGGAATGGATCGTCTTTAACACTTTAAGGAA-CTGAAGATATAAAAGAACT
129 GAAAA-TTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACT
**
33453861 CAAAAATGTTTGACAAGTTCGGAAG
192 CGTAAATGTTTGACAAGTTCGGAAG
* * * * *
33453886 TTCGTCCAAGAACCAACAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAAACCAAGAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * *
33453951 TCGTTTACCAAATGACAAACTTTTTAGACCAAATGATGCGATTCCT-GAGCATGTAATGTTC-GC
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
* * * * *
33454014 AAAATTGGTCGAAGGAATGGATCGCCTTGCATTCTCTCAA-GAACCGAAGTTATAAAAGAACTCG
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAACTCG
* *
33454078 TAAATGTTTGACAAGTTTGGATG
194 TAAATGTTTGACAAGTTCGGAAG
* *
33454101 TTCGTCCAAGAACCAAGAGAGAAATAATTATCACGTAAATAA----TTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * **
33454162 TTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGACTTCCCGAGCATGGAATACTC-GA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
** * * *
33454226 AAAATTACTCAAAGGAATGGATCGTCTTTAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGT
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGT
* **
33454291 AAATGTTTGACAAGATCAAAAG
195 AAATGTTTGACAAGTTCGGAAG
* * * *
33454313 TTCGTCCAAGATCCAAGAGAGAAACAATTCCCACGTAAGTAAGTTTTTAATTCAAAAACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * *
33454378 TTGTTTACAAGATGAAAAACTACTCT-GACCAAATGATGCGATTTCTCAAGAATGGAATGTTCAG
66 TTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* * * * * * *
33454442 AAAATTAGTTGAAGGAATGGATCATCTTGAATACTCTCAGGAATCGAAGTTAGAAAAGAACTCAT
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGT
33454507 AAATGTTTGACAAGTTCGGAAG
195 AAATGTTTGACAAGTTCGGAAG
* *
33454529 TTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
** * * *
33454594 TTGTTTA-AAGAATGACAAACTATTTTTACCAAATGATTCCATATTAC-CGAGAATGGAATGTTC
66 TTGTTTACAA-AATGACAAACTATTTAGACCAAATGATGCGAT-TT-CTCGAGCATGGAATGTTC
* * * *
33454657 AGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTT
128 AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC
* *
33454722 GTAAATGTTTGA-GAGTTCAGAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* * * * * * * * *
33454745 TTCGTCTAAGTACCAAAAGAGAAATAATAT-TCATGTACATAAGTTTTTAATTTAAACACCACAA
1 TTCGTCCAAGAACCAAGAGAGAAACAAT-TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* *
33454809 GTTATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTC-CTGAGCATGGAATGTTC-
65 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCA
* * * * ** *
33454872 GAAAAATTAGAT-GAAGGAATGGTTCGTCTTGAATGCTTTAAGGAACCGAAGTCGTTAAAGAACT
129 G-AAAATT-GGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
** * **
33454936 CAAAAATGTTTGACATGTTCAAAAG
192 CGTAAATGTTTGACAAGTTCGGAAG
* * * * * *
33454961 TTTGTCTAAGAACCAACA-ATGAAACAATTCTCACGTAAAAAAAGTTTATAATTCAAAAACCAAA
1 TTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAA
* * * *
33455025 AGTTGTTTTCAAAACGACAAACTTTTTAGACCAAATGAAGCGA-TTCTCGAGCATGGAATGTTCA
64 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCA
* * * * * *
33455089 AAAAATTTGTCGAAGGAATGGATCGTCTTGAATACTCTCAA-GAATCAAAGTTATAATAGAACTT
129 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAACTC
* * *
33455153 GTAAATGTTTGACAAATTCGAAAA
193 GTAAATGTTTGACAAGTTCGGAAG
*
33455177 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA----TTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * *
33455238 TTGTTTACAAAATGA-AAGCTATTTAGACCAAATAATGCAACTTCCCGAGCATGGAATGTTTAGA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
* * *
33455302 AAATTGGTCGAAGGAATGGATAGTCTTGAATACTCTCAA-GAACCGAAGTTATAAAAGAACTCGT
131 AAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAACTCGT
* **
33455366 AAATGTATGACAAGTTTAGAAG
195 AAATGTTTGACAAGTTCGGAAG
* * * * * * *
33455388 TTTGCCCAAGAA-CAAGAGAGAAACAATTCTCATGTAAATATGTTTTTAATTTAAAGACTACAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33455452 TTGTTTACAAAATGACAAACTATTTAGACCAAATGCTTCTATTTAC-CGAGAATGGAATGTTC-G
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CTCGAGCATGGAATGTTCAG
* * * *
33455515 AAAAATTGGTCGAAGGAATGGATTGTCTTGAATACTTTAAAGAACCGAAGTTTTAAAAGAACTCG
130 -AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* *
33455580 TAAATGTTTGACATGTTCAGAAG
194 TAAATGTTTGACAAGTTCGGAAG
* * * *
33455603 TTCGTCCAAGAACAAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAAAATCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
** * * * *
33455668 TTGTTTACAAAATGACAAACTGCTTAGACCAAATGATGTGATTTCCCTAGCATAGAATGTTC-GA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
* * * * * *
33455732 AAAATTGCTCGAAGGAATGGATTC-TATTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCA
130 AAAATTGGTCGAAGGAATGGA-TCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* **
33455796 TAAAAGTTTGACAAGTTTAGAAG
194 TAAATGTTTGACAAGTTCGGAAG
* ** * *
33455819 TTTG-GAAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-A-TTTTTAATTTAAAGACCAAAGG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
33455881 TTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTTGAGCATGGAATGTTC-GA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
* ** * * ** *
33455945 AAAATTGCTTTAAGGAATGAAT--TCCCTGAATGTTTTAAGGAA-CGGAAGATATAAAAGAACTC
130 AAAATTGGTCGAAGGAATGGATCGT-CTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* * * **
33456007 ATAAAAGCTTGACAAGCGCGGAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* *
33456031 TTCGCCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * * * *
33456096 TTGTTTACAAAATGACCAACTATTT-TACCAAATGATGTGAATTCCCAAGAATAGAATTTTC-GA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
* * * * *
33456159 AAAATTGGTC-AAAGAATGGATCGTCTTGAATA-TTCTCAGGAACCAAAGTTTTAAAAGAACTCG
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAATCGAAGTTATAAAAGAACTCG
33456222 TAAATGTTTGACAAGTTC-GAAG
194 TAAATGTTTGACAAGTTCGGAAG
* * * *
33456244 TTCGTCCAAGAATCAAAAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCACAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * * *
33456309 TTATTTACAAAATAACAAACTTTTTAGACAAAATGATACTATTTC-CTGAGCATGGAATATTCTG
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCAG
* * *
33456373 AAAATTGGAT-GAAGGAATGGATCATCTTGAACACTTTAAGGAA-CTGAAGATATAAAAGAACTC
130 AAAATTGG-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* *
33456436 GAAAATGTTTGACAAGTTCAGAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* * * * * * *
33456460 TTCATCCAAGATCCAACAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAAACCAAGAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * *
33456525 TCGTTTACCAAATGGCAAACTTTTTAGACCAAATGATGCGATTCCT-AAGCATGTAATGTTC-GA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
* * * * *
33456588 AAAATTAGTCGAAGGAATGGATCGCCTTGAATTCTCTCAGGAATCGAAGTTATAAAAGAACTCGT
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGT
* * *
33456653 AAATGTTTAACAAGTTTGGATG
195 AAATGTTTGACAAGTTCGGAAG
* * *
33456675 TTCATTCAAGAACCAAGAGAGAAACAATTATCACGTAAATAA----TTAATTCAAAGACCAAAA-
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * ** * * * * *
33456735 TTAATTTAAAAAATGGGAAACTATATAAACCAAATGATGCGACTTCCCGAGCATGGAATGCTC-G
66 TT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* * * * *
33456799 AAAAATTGCTCAAAGGAATGGATCGTCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAACTTG
130 -AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
33456864 TAAATGTTTGACAAGATT-GGAAG
194 TAAATGTTTGACAAG-TTCGGAAG
* * * * * *
33456887 TTCGTCTAAGATCCAAGAGAGAAATAATTCTCACGTAATTAAG-TTTAAATTCAAAAACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * *
33456951 CTGTTTACAAGATGAAAAACTACTTT-GACCAAATGATGCGGTTTCTCAAGAATAGAATGTTCAG
66 TTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* * * * * *
33457015 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTAGAAAAGATCTCAT
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGT
33457080 AAATGTTTGACAAGTTCGGAAG
195 AAATGTTTGACAAGTTCGGAAG
* * * *
33457102 TTTGTCCAAGAACCAATAGAGAAACAATTCTCATGTAAATAAGTTTTAAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * ** * * *
33457167 TTGTTTACAGAATGGCAAACTATTTTTACCAAATGATTCCATTT-TACCGAGAATGGAATGTTCA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT--CGAGCATGGAATGTTCA
* *
33457231 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTCG
129 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* * * *
33457296 TATATGTTTGAGAGGTTCAGAAG
194 TAAATGTTTGACAAGTTCGGAAG
* * * * *
33457319 TTCGTCCAAGAA-CAAAAAAGAAATAATTCTCATGTAAATAAGTTTTTAATTC-AAGCACCACAA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACCAAAA
* * *
33457382 GCTGTTTTCAAAATGACAAACTTTTTAGACCAAATGATGCGATTTC-CTGAGCATGGAATGTTC-
65 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCA
* * *
33457445 GAAAAATTAGAT-GAAGGAATGGTTCGTCTTGAATGCTTTAAGGAATCGAAGTTATAAAAGAACT
129 G-AAAATT-GGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT
** * *
33457509 CAAAAATGTTTGACATGTTCAGAAG
192 CGTAAATGTTTGACAAGTTCGGAAG
* * * *
33457534 TTTGTCCAAGAACCAATA-ATGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAAACCAAAA
1 TTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * *
33457598 GTTGTTTTCAAAACGACAAACT-TTTAGACCAAATGAAGCGA-TTCTCGAGCATGGAATTTTCAA
65 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-A
* * * *
33457661 AAAAATT-GTCAAAGGAATGGATCGTCTTGAATACTCTCAA-GAATCGAAGTTATAAAAGAACTT
129 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAACTC
* * *
33457724 GTAAATGTTTGACAAATTTGTAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* * * *
33457748 TTTGTCCAAGAACCAAGAGAGAAACATTTCTCACGT--A-AA-TTATTAATTCAAAGACCAAATG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33457809 TTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCAACTTCCCGAGCATGGAATGTTCAGA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
* *
33457874 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCT-A-GAACCAAAGTTATAAAAGAACTCG
131 AAATTGGTCGAAGGAATGGATCGTCTTGAATACT-T-TAAGGAATCGAAGTTATAAAAGAACTCG
* *
33457937 TACATGTTTGACAAGTTCAGAAG
194 TAAATGTTTGACAAGTTCGGAAG
* * * * * *
33457960 TTTGCCCAAGAA-CAAGAGAGAAATAATTCTCACGTAAATATGTTTTTAATTTAAAGACTAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33458024 TTTTTTACAAAATGACAAACTATTTAGACCAAATGTTGCGATTTATCGAGAATGGAATGTTCA-A
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
* * *
33458088 ATAATTGGTCGAAGGAATGGAT-ATCTTGAATACTTTAAAGAAAT-GAAGTTTTAAAAGAACTCG
131 A-AATTGGTCGAAGGAATGGATCGTCTTGAATACTTT-AAGGAATCGAAGTTATAAAAGAACTCG
* * **
33458151 TGAATGTTTGACATGTTCAAAAG
194 TAAATGTTTGACAAGTTCGGAAG
* * * **
33458174 TTCATCCAAGAACAAAGAGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAAGATTAAA
1 TTCGTCCAAGAAC-CA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * * *
33458239 AGTTGTTTACAAAATGACAAATTGTTTAGACCAGATGATGTGATTTCCCAAGCATAGAATGTTCA
64 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCA
* * * * * * *
33458304 GAAAATTGCTCAAAGGAATGGATCCTATTGAATTCTTTATGGAA-CTGAACTTATAAAAGAACTC
129 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* * *
33458368 ATAAAAGTTTGACAAGTTTGGAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* ** * * *
33458392 TTTG-GAAAAAACCAAGAGAGAAACAATTCTCACGTAAAT-A-TTTTTAATTTAAAGA-CAGAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAA
* * * *
33458453 GTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTTTCGAGCGTGGAATGTTC-G
65 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* * * * * * *
33458517 AAAAATTGTTCCAAGGAATGGATTGTCCTAAATGCTTTAAGGAA-CGAAAGTTATAAAAGGACTC
130 -AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCG-AAGTTATAAAAGAACTC
* * * ** *
33458581 ATAAAAGCTTGACAAGCGCGAAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* * * *
33458605 TTCGGCCAAGAACTAAGAAAGAAACAATTCTCACGTAAATTAG-TTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * **
33458669 TTGTTTACAAAATGACAAACTACTTT-TACCAAATGATGCAATTTCCCTAGAATGGAAT-TTTTG
66 TTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* * * * *
33458732 AAAAGTTGG-CGAAGGAATGGATCATCTTGACTA-TTCTCAGGAACCAAAGTTATAAAAGAACTC
130 AAAA-TTGGTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAATCGAAGTTATAAAAGAACTC
* * * *
33458795 ATGAATGTTTGACAAGTTTGAAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* * * * * * *
33458819 TTCGTCCAAGAACCAAAAGAGAAACGATTCTCATGTAAATAAATTTTTAATTTAAGGACCACAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33458884 TTATTTACAAAATAACAAACTTTTTAGACCAAATGATGCTATTTC-CTGAGCATGGAATGTT-AT
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCA-
*** * * *
33458947 GAAAATTGGAAAAAGGAATGGATCGTCTTGAACACTTTAAGGAA-CTGAAGATATAAAAGAACTT
129 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
** *
33459011 AAAAATGTTTGACAAGTTCAGAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* * * * * * * *
33459035 TTCGTTCAATAACAAACAAAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAAAACCAAGAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * *
33459100 TTGTTTACCAAATGACAAACTTTTTAGACCAAATGATACAATTCCT-GAGCATGTAATGTTC-GA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
* * * * * * *
33459163 AAAATTGGTCGAAGGAATGGATTGCCTTGAATTCTCTCAGGAA-CTGAAATTATAAAAGAACTCA
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCG
* *
33459227 TAAATGTTTGACAAGTTTGGATG
194 TAAATGTTTGACAAGTTCGGAAG
* * * * *
33459250 TTCGTTCAAGAACCAAGAGAGAAACAATTATCACGTAAATAA----TTATTTCAAAGACAAAAAT
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * *
33459311 TTGTTTACAAAATGAGAAACTATATAGGCCAAATGATGTGACTTCCCGAGCATGGAATGCT-AGA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
* * * * * *
33459375 AAATTGCTCAAAAGAATGGATCGTCTTTAATAATTTAAGGAA-CTGAAGTTAT-AAAGAACTCAT
131 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCGT
33459438 AAATGTTTGACAAGATT-GGAAG
195 AAATGTTTGACAAG-TTCGGAAG
* * * *
33459460 TTCGTCCAAGATCCAAGAGACAAACAATTCTCACATAAATAAAGTTTTTAATTCAAAAACCAAAA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGACCAAAA
* * * * *
33459525 GTTGTTTACAAGATGAAAAACTACTTT-GACCAAATGATGCGATTTCTCAAGAATGGAATGTTCG
65 GTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCA
* * * * * * *
33459589 GAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACCGAAGTTAGAAAATAACTCA
129 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
*
33459654 TAAATGTTTGACAAGTT-AGAACG
194 TAAATGTTTGACAAGTTCGGAA-G
* * * *
33459677 TTTGTCCAAGAACCAACAGAGAAACAATTCTCACTTCAATAAGTTTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * *
33459742 TTGTTTTTACCAAATGATTC-CA-T-TTTA-TCGAGA-G-TG-GAATGT-TCGA--A--AAATTG
66 TTG--TTTACAAAATGA--CAAACTATTTAGACCAAATGATGCG-ATTTCTCGAGCATGGAA-TG
* **** *
33459795 GTCA-AAGGAA-TGGATCCCCTTGAAT--ACTC-TCATGAAT-C-----------GAAGTTATAA
125 TTCAGAA--AATTGG-T-CGAAGGAATGGA-TCGTCTTGAATACTTTAAGGAATCGAAGTTATAA
* * * * **
33459843 AAGAACTAGCAAATGTTTGAGAGGTTAAGAAG
185 AAGAACTCGTAAATGTTTGACAAGTTCGGAAG
* * * * * * * *
33459875 TTTGTCTAAGAACCAAAAGAGAAATAATTCTCATGTAAATAAGTTTCTAATTCAAACACCACAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
33459940 TTGTTTACAAAATGACAAA-TTTTTAGACCAAATGATGTGATTTC-CTGAGCATAGAATGTT-AG
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCAG
* * * * * * *
33460002 AAAAATTAGACGAAGCAATGGTTTGTCTTGAATGA-TTTAACGAATCAAAGTTATAAAAGAACTC
130 -AAAATTGGTCGAAGGAATGGATCGTCTTGAAT-ACTTTAAGGAATCGAAGTTATAAAAGAACTC
** * **
33460066 AAAAATGTTTGACATGTTCAAAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* * * *
33460090 TTTGTCCAAGAACCAACA-ATGAAACAATTCTCACCTAAAAAAGTTTTTAATTCAACA-ACCAAA
1 TTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAA-AGACCAAA
* * * *
33460153 AGTTGTTTTCAAAATGACAAACTTTTTAGACCAAATGAAGCGA-TTCTCGAGCTTGGAATGTTCA
64 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCA
* * * *
33460217 AAAAATTTGTCGAAGGAATGGATCGTCTTGAATACTCTCAA-GAATCGAAGTTATAAAAGAACTT
129 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAACTC
* *
33460281 GTAAATGTTTGACAAATTTGGAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* *
33460305 TTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA----TTAATTCAAAGACAAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33460366 TTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGACTTCCCGAGCATGGAATGTT-AAA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
* * * *
33460430 AAATTGGTCGAAGGAATTGATCATCTTGAATACTCTCAA-GAATCGAAGTTATAAAAGAACTTGT
131 AAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAACTCGT
*
33460494 AAATGTTTGACAAGTTCAGAAG
195 AAATGTTTGACAAGTTCGGAAG
* * * * *
33460516 TTTGCCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATATG-TTTTAATTTAAAGACTAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
33460579 TTGTTTACAAAATGACAAACTATTTAGACCAAATGCTGCGATTTAC-CAAGAATGGAATGTTC-G
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CTCGAGCATGGAATGTTCAG
* * * *
33460642 AAAAATTGGTCGAAGGAATGGATTGTCTTGAATACTTTAAAGAA-CAAAAGTTTTAAAAGAACTC
130 -AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* * *
33460706 GTAAATGTTTGGCATGTTCGAAAG
193 GTAAATGTTTGACAAGTTCGGAAG
* * * * * *
33460730 TTCGTCCAAGAACAAAGAGAGAAACAATTCTAACGTACATAAGTTTTTTATTCTAAGATCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33460795 TTGTTTACAAAATGACAAACTGTTTAGACCAAATGATGTGATTTCCCGAGCATAGAATGTTC-GA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-
* * * * * * *
33460859 AAAATTGCTCGAAGGAATGGATCCTATTGAATTCTTTAAGGAACCGAAGTTATAAAAGAGCTCAT
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGT
* *
33460924 AAAAGTTTGACAAGTTTGGAAG
195 AAATGTTTGACAAGTTCGGAAG
*** * * * *
33460946 TTC-AAGAAGAGCCAAGAGAGAAACAATTCTCACGTAAAT--GTTTTTTATTTAAAGACCAAAGG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * *
33461008 TTGATTACAAAATGACAAACCATTTAGATCAAATGATGCGATTTTTCGAGCACGGAATGTTTAGA
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
* * * * *
33461073 AAATTGGTCGAAGGAATGCG-TTGTCCTGAATGCTTTAAGG-ATCAAAAGTTATAAAAGAACTCA
131 AAATTGGTCGAAGGAATG-GATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCG
* * ** * *
33461136 TAAAAGCTTGACAAGCGCAGATG
194 TAAATGTTTGACAAGTTCGGAAG
* * *
33461159 TTCGGCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * ** *
33461224 TTGTTTACAAAATGACAAACTACTTT-TACCAAATGATGCGATTTCCCAATAATGGAATGTTCAA
66 TTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* ** * * *
33461288 AAAATTGGTCGAAGGAATGGATCGTCTTCAATACTCCAA-GAATCAAAGTTAAAAAAGAACTCGA
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGT
33461352 AAATGTTTGACAAGTTCGGAAG
195 AAATGTTTGACAAGTTCGGAAG
* * * * * *
33461374 TTTGTCCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTAATTTAGAGAGCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
33461439 TTCTTTACAAAATGACAAACTATTTGGACCAAATGATGCGACTTTC-CGAGCATGGAATGCTC-G
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCTCGAGCATGGAATGTTCAG
* * * * * *
33461502 AAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTCTAAAAGAACTCG
130 -AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
*
33461567 TAAATGTTTGACAAGTTCAGAAG
194 TAAATGTTTGACAAGTTCGGAAG
* * * * * * * * *
33461590 TTCGTCCAAAAACTAATAGAGAAGCAATTCTAACTTAAATAAGTTTTTAATTTAATGACAAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* *
33461655 TTGTTTACAAAATTA-AATACTATTTAGACTC-AATGATGCAATTTCTCGAGCATGGAATGTT-A
66 TTGTTTACAAAATGACAA-ACTATTTAGAC-CAAATGATGCGATTTCTCGAGCATGGAATGTTCA
* * * * * * * *
33461717 GGAAAATTGATTGAAAGAATGGATCATCATGGATACTCTCAA-GAATTGAAGTTATAAAAGAACT
129 -GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAACT
* *
33461781 CATAAATGTTTGACAAGTTCGAAAG
192 CGTAAATGTTTGACAAGTTCGGAAG
* *
33461806 TTCGTCCAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33461871 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTC-CTGAGAATGTAATGTTCCG
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCAG
* * *
33461935 AAAATTGGTTGAAGGAATGGATCGAAGGAATGGCTCATCTTGAATACTCTCAGGAATCGAAGTTA
130 AAAATTGGTCGAAGGAATGGATC---------G----TCTTGAATACTTTAAGGAATCGAAGTTA
* * *
33462000 TTAAAGAACTAGTAAATGTTTCACAAGTTCGGAAG
182 TAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAG
* * ** * * * * *
33462035 ATCTTTTAGGAACTAAGAGAGAAACAATTTTCACCTAAATAAGTTTTTAATTCAAAAACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * *
33462100 TGGTTTACAAAATAAAAAAACTATTTTGACCAAATAATACGATTTCTCGAGCATGGAATGTTCGG
66 TTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* * * * * ** * * *
33462165 CAAATTGCTCTAAAGAATTGATCACCTTGAATACTTTATGGAA-CTGATGTTACAAAAGAACTCG
130 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCG
* * *
33462229 TAAAAGTTTGACAAGTTTGGAAA
194 TAAATGTTTGACAAGTTCGGAAG
* * *
33462252 TT-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTGTAATTCCAAGACCAAAAA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * *
33462316 TTGTTTACAAAATTAAAAACTATTTAGACTC-AATGATGTGATTTCCCGAGCATTGAATGTTC-G
66 TTGTTTACAAAATGACAAACTATTTAGAC-CAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* * * *
33462379 AAAAATTGGTCGAAGGAATGGATTGTCTTGAATACTCTCAGGAA-CTGAAGTTATAAAAGAACAC
130 -AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTC
* *
33462443 GTAAATGTTTAACAAGTTTGGAAG
193 GTAAATGTTTGACAAGTTCGGAAG
**
33462467 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATATAAATAAGTTGTTTACAAATTCAAAGACCA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTT---AATTCAAAGACCA
* * * * * * * * * *
33462532 ACAGTTGTTAACAAATTCAAAAACTATATAGACCAAATGATGCGATTTCCCAAGCATGAAATTTT
62 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* * *
33462597 TAGAAAATTGGTTG-AGAGAATGGATCGTCTTGAATACTCTT-AGGAACCGAAGTTATAAAAGAA
127 CAGAAAATTGGTCGAAG-GAATGGATCGTCTTGAATACT-TTAAGGAATCGAAGTTATAAAAGAA
* *
33462660 CTCGTAAATGTTTGACAAGTTTGAAAG
190 CTCGTAAATGTTTGACAAGTTCGGAAG
* * * *
33462687 TTCATCCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
*
33462752 TTGTTTACAAAATGACACACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCA-A
66 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
* * * * * * *
33462816 AAAGTTGCTCAAATGAATGGGTCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCTT
131 AAA-TTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTC-G
* *
33462881 TAAA-GTTTGACTAGTTCGTAAG
194 TAAATGTTTGACAAGTTCGGAAG
* * * *
33462903 TTCGTCTAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTTAATTCAAAGACCAAAAC
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33462968 TTGTTTACAAAATGGCAAACAATTTTAG--CAAATGATGCTATTTCCCGAGCATGGAATGTTC-G
66 TTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG
* * * * * *
33463030 AAAAATTTGTTGAAGGGAATGGATCGTCTTGAATACTCTCAGGATAT-GAAATTATAAAAGAGCT
130 -AAAATTGGTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGA-ATCGAAGTTATAAAAGAACT
* *
33463094 CGTAAATGTTTGACATGTTCAGAAG
192 CGTAAATGTTTGACAAGTTCGGAAG
* * * ** *
33463119 TTTGTCCAAGAACCAAGAGAGAAGCAATTCTCATGTACGTAAGTTTTTAATTCAAAGGCCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
*
33463184 TTGTTTACCAAATGA
66 TTGTTTACAAAATGA
33463199 TGTGATTTCC
Statistics
Matches: 7918, Mismatches: 1331, Indels: 562
0.81 0.14 0.06
Matches are distributed among these distances:
194 1 0.00
195 2 0.00
196 15 0.00
197 3 0.00
198 90 0.01
199 10 0.00
200 3 0.00
201 4 0.00
202 5 0.00
203 12 0.00
204 4 0.00
209 5 0.00
210 193 0.02
211 536 0.07
212 432 0.05
213 586 0.07
214 590 0.07
215 1945 0.25
216 2348 0.30
217 700 0.09
218 67 0.01
219 7 0.00
220 179 0.02
221 3 0.00
228 1 0.00
229 119 0.02
230 57 0.01
231 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGA
AAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTA
AATGTTTGACAAGTTCGGAAG
Found at i:33454849 original size:432 final size:430
Alignment explanation
Indices: 33453453--33464365 Score: 11031
Period size: 432 Copynumber: 25.5 Consensus size: 430
33453443 GCATCGAATA
* *
33453453 TTCGGCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33453518 TTGTTTACAAAATGACAAACTATTTT-TACCAAATGATGCGATTTCCCTAGAATGGAATTTTCGA
66 TTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-
* * * *
33453582 AAAATTGGTCGAAGGAATGGGTTGTCTTGAATATTCTCAGGAACCAAAGTTATAAAAGAACTCAT
129 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
* * *
33453647 AAATGTTTGACAAGTTCGGAAGTTCGTCCAATAACCAAAAGAGAAACAATTCTCATGTAAATAAG
194 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
** * * * * * *
33453712 TTTTTAATTCAAAGGGCACAAGTTAATTTACAAAATAACAAACTTTTTAGACCAAATGATGCTAT
259 TTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
* * * * *
33453777 TT-CCTGGGCATGGAATGTTTTGAAAATTTGAT-GAAGGAATGGATCGTCTTTAACACTTTAAGG
323 TTACC-GAGCATGGAATG-TTCGAAAA-TTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* ** *
33453840 AA-CTGAAGATATAAAAGAACTCAAAAATGTTTGACAAGTTCGGAAG
385 AATC-GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * * *
33453886 TTCGTCCAAGAACCAACAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAAACCAAGAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33453951 TCGTTTACCAAATGACAAACTTTTTAGACCAAATGATGCGA-TTCCTGAGCATGTAATGTTCGCA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-A
* * * * *
33454015 AAATTGGTCGAAGGAATGGATCGCCTTGCATTCTCTCAAGAACCGAAGTTATAAAAGAACTCGTA
130 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATA
* * * *
33454080 AATGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTATCACGTAAATAA--
195 AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
33454143 --TTAATTCAAAGACCAAAAGTTGTTTACAAAATGAGAAACTATTTAGACCAAATGATGCGACTT
260 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTT
* ** ** * *
33454206 CCCGAGCATGGAATACTCGAAAAATTACTCAAAGGAATGGATCGTCTTTAATACTTTAAGGAATC
325 ACCGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC
* * *
33454271 AAAGTTATAAAAGAACTCGTAAATGTTTGACAAGATCAAAAG
389 GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * *
33454313 TTCGTCCAAGATCCAAGAGAGAAACAATTCCCACGTAAGTAAGTTTTTAATTCAAAAACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * *
33454378 TTGTTTACAAGATGAAAAACTACTCT-GACCAAATGATGCGATTTCTCAAGAATGGAATGTTCAG
66 TTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-G
* * * * *
33454442 AAAATTAGTTGAAGGAATGGATCATCTTGAATACTCTCAGGAATCGAAGTTAGAAAAGAACTCAT
129 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
*
33454507 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAG
194 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* ** *
33454572 TTTTTATTTCAAAGACCAAAAGTTGTTTA-AAGAATGACAAACTATTTTTACCAAATGATTCCAT
259 TTTTTAATTCAAAGACCAAAAGTTGTTTACAA-AATGACAAACTATTTAGACCAAATGATTCGAT
* * * *
33454636 ATTACCGAGAATGGAATGTTCAGAAAATTGGTCGAAGGAATGGATCATCTTGAATACTCTCAGGA
323 -TTACCGAGCATGGAATGTTC-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
33454701 ATCGAAGTTATAAAAGAACTTGTAAATGTTTGA-GAGTTCAGAAG
386 ATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * * * * * * *
33454745 TTCGTCTAAGTACCAAAAGAGAAATAATAT-TCATGTACATAAGTTTTTAATTTAAACACCACAA
1 TTCGTCCAAGAACCAAGAGAGAAACAAT-TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* *
33454809 GTTATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGA
65 GTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-
* * * * * ** *
33454874 AAAATTAGAT-GAAGGAATGGTTCGTCTTGAATGCTTTAAGGAACCGAAGTCGTTAAAGAACTCA
129 AAAATT-GGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCA
* * ** * * * *
33454938 AAAATGTTTGACATGTTCAAAAGTTTGTCTAAGAACCAACA-ATGAAACAATTCTCACGTAAAAA
193 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGT-AAAT
* * * * * **
33455002 AAGTTTATAATTCAAAAACCAAAAGTTGTTTTCAAAACGACAAACTTTTTAGACCAAATGAAGCG
256 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCG
* * *
33455067 A-TT-CTCGAGCATGGAATGTTCAAAAAATTTGTCGAAGGAATGGATCGTCTTGAATACTCTCAA
321 ATTTAC-CGAGCATGGAATGTTC-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAA
* * * * *
33455130 -GAATCAAAGTTATAATAGAACTTGTAAATGTTTGACAAATTC-GAAAA
383 GGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAG-AAG
*
33455177 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA----TTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * *
33455238 TTGTTTACAAAATGA-AAGCTATTTAGACCAAATAATGCAACTTCCCGAGCATGGAATGTTTAGA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGA
* * *
33455302 AAATTGGTCGAAGGAATGGATAGTCTTGAATACTCTCAAGAACCGAAGTTATAAAAGAACTCGTA
130 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATA
* ** * * * *
33455367 AATGTATGACAAGTTTAGAAGTTTGCCCAAGAA-CAAGAGAGAAACAATTCTCATGTAAATATGT
195 AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
33455431 TTTTAATTTAAAGACTACAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGCTTCTATTT
260 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTT
* * * *
33455496 ACCGAGAATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATTGTCTTGAATACTTTAAAGAACC
325 ACCGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC
* *
33455561 GAAGTTTTAAAAGAACTCGTAAATGTTTGACATGTTCAGAAG
389 GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * *
33455603 TTCGTCCAAGAACAAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAAAATCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
** * * *
33455668 TTGTTTACAAAATGACAAACTGCTTAGACCAAATGATGTGATTTCCCTAGCATAGAATGTTCGAA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-A
* * * * * *
33455733 AAATTGCTCGAAGGAATGGATTC-TATTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCAT
130 AAATTGGTCGAAGGAATGGA-TCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
* ** * **
33455797 AAAAGTTTGACAAGTTTAGAAGTTTG-GAAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-A-
194 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
33455859 TTTTTAATTTAAAGACCAAAGGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
259 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATT
*** * ** * * **
33455924 TTTTGAGCATGGAATGTTCGAAAAATTGCTTTAAGGAATGAAT--TCCCTGAATGTTTTAAGGAA
324 TACCGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGT-CTTGAATACTTTAAGGAA
* * * * ** *
33455987 -CGGAAGATATAAAAGAACTCATAAAAGCTTGACAAGCGCGGAAG
387 TC-GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* *
33456031 TTCGCCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * *
33456096 TTGTTTACAAAATGACCAACTATTTT--ACCAAATGATGTGAATTCCCAAGAATAGAATTTTCGA
66 TTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-
* * * * *
33456159 AAAATTGGTC-AAAGAATGGATCGTCTTGAATATTCTCAGGAACCAAAGTTTTAAAAGAACTCGT
129 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
* * *
33456223 AAATGTTTGACAAGTTC-GAAGTTCGTCCAAGAATCAAAAGAGAAACAATTCTCATGTAAATAAG
194 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
33456287 TTTTTAATTCAAAGACCACAAGTTATTTACAAAATAACAAACTTTTTAGACAAAATGATACTATT
259 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATT
* * *
33456352 T-CCTGAGCATGGAATATTCTGAAAATTGGAT-GAAGGAATGGATCATCTTGAACACTTTAAGGA
324 TACC-GAGCATGGAATGTTC-GAAAATTGG-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
33456415 A-CTGAAGATATAAAAGAACTCGAAAATGTTTGACAAGTTCAGAAG
386 ATC-GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * * * * *
33456460 TTCATCCAAGATCCAACAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAAACCAAGAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * ** *
33456525 TCGTTTACCAAATGGCAAACTTTTTAGACCAAATGATGCGA-TTCCTAAGCATGTAATGTTCGAA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-A
* * * * *
33456589 AAATTAGTCGAAGGAATGGATCGCCTTGAATTCTCTCAGGAATCGAAGTTATAAAAGAACTCGTA
130 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATA
* * * * * *
33456654 AATGTTTAACAAGTTTGGATGTTCATTCAAGAACCAAGAGAGAAACAATTATCACGTAAATAA--
195 AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * ** * * * *
33456717 --TTAATTCAAAGACCAAAA-TTAATTTAAAAAATGGGAAACTATATAAACCAAATGATGCGACT
260 TTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATT
* * * * * *
33456779 TCCCGAGCATGGAATGCTCGAAAAATTGCTCAAAGGAATGGATCGTCTTTAATACTTTAAGGAAC
324 TACCGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAT
* *
33456844 CGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGATT-GGAAG
388 CGAAGTTATAAAAGAACTCGTAAATGTTTGACAAG-TTCAGAAG
* * * * * *
33456887 TTCGTCTAAGATCCAAGAGAGAAATAATTCTCACGTAATTAAG-TTTAAATTCAAAAACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * * * *
33456951 CTGTTTACAAGATGAAAAACTACTTT-GACCAAATGATGCGGTTTCTCAAGAATAGAATGTTCAG
66 TTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-G
* *
33457015 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTAGAAAAGATCTCAT
129 AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
* * *
33457080 AAATGTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAATAGAGAAACAATTCTCATGTAAATAAG
194 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * ** *
33457145 TTTTAAATTCAAAGACCAAAAGTTGTTTACAGAATGGCAAACTATTTTTACCAAATGATTCCATT
259 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA-T
* * *
33457210 TTACCGAGAATGGAATGTTCAGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAA
323 TTACCGAGCATGGAATGTTC-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * *
33457275 TCGAAGTTATAAAAGAACTCGTATATGTTTGAGAGGTTCAGAAG
387 TCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * * *
33457319 TTCGTCCAAGAA-CAAAAAAGAAATAATTCTCATGTAAATAAGTTTTTAATTC-AAGCACCACAA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACCAAAA
* * *
33457382 GCTGTTTTCAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGA
65 GTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-
* * * * * *
33457447 AAAATTAGAT-GAAGGAATGGTTCGTCTTGAATGCTTTAAGGAATCGAAGTTATAAAAGAACTCA
129 AAAATT-GGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCA
* * * * * *
33457511 AAAATGTTTGACATGTTCAGAAGTTTGTCCAAGAACCAATA-ATGAAACAATTCTCACGTAAAAA
193 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAATA
* * * **
33457575 AGTTTTTAATTCAAAAACCAAAAGTTGTTTTCAAAACGACAAACT-TTTAGACCAAATGAAGCGA
257 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * * *
33457639 -TT-CTCGAGCATGGAATTTTCAAAAAAATT-GTCAAAGGAATGGATCGTCTTGAATACTCTCAA
322 TTTAC-CGAGCATGGAATGTTC--GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAA
* * *
33457701 -GAATCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAATT-TGTAAG
383 GGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAG-AAG
* * * *
33457748 TTTGTCCAAGAACCAAGAGAGAAACATTTCTCACGT--A-AA-TTATTAATTCAAAGACCAAATG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33457809 TTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCAACTTCCCGAGCATGGAATGTTCAGA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GA
* *
33457874 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCTA-GAACCAAAGTTATAAAAGAACTCGT
130 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTC-AGGAACCGAAGTTATAAAAGAACTCAT
* * * * * *
33457938 ACATGTTTGACAAGTTCAGAAGTTTGCCCAAGAA-CAAGAGAGAAATAATTCTCACGTAAATATG
194 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
33458002 TTTTTAATTTAAAGACTAAAAGTTTTTTACAAAATGACAAACTATTTAGACCAAATG-TTGCGAT
259 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATT-CGAT
* * * * *
33458066 TTATCGAGAATGGAATGTTCAAATAATTGGTCGAAGGAATGGAT-ATCTTGAATACTTTAAAGAA
323 TTACCGAGCATGGAATGTTCGAA-AATTGGTCGAAGGAATGGATCGTCTTGAATACTTT-AAGGA
* * * *
33458130 AT-GAAGTTTTAAAAGAACTCGTGAATGTTTGACATGTTCAAAAG
386 ATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * **
33458174 TTCATCCAAGAACAAAGAGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAAGATTAAA
1 TTCGTCCAAGAAC-CA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * *
33458239 AGTTGTTTACAAAATGACAAA-TTGTTTAGACCAGATGATGTGATTTCCCAAGCATAGAATGTTC
64 AGTTGTTTACAAAATGACAAACTT-TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * * * *
33458303 AGAAAATTGCTCAAAGGAATGGATCCTATTGAATTCT-TTATGGAACTGAACTTATAAAAGAACT
128 -GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCA-GGAACCGAAGTTATAAAAGAACT
* * * ** *
33458367 CATAAAAGTTTGACAAGTTTGGAAGTTTG-GAAAAAACCAAGAGAGAAACAATTCTCACGTAAAT
191 CATAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
33458431 -A-TTTTTAATTTAAAGA-CAGAAGGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGC
256 AAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTC
* ** * * * * * * *
33458493 AATTTTTCGAGCGTGGAATGTTCGAAAAATTGTTCCAAGGAATGGATTGTCCTAAATGCTTTAAG
320 GATTTACCGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * **
33458558 GAA-CGAAAGTTATAAAAGGACTCATAAAAGCTTGACAAGCGC-GAAAG
384 GAATCG-AAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAG-AAG
* * * *
33458605 TTCGGCCAAGAACTAAGAAAGAAACAATTCTCACGTAAATTAG-TTTTAATTCAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * *
33458669 TTGTTTACAAAATGACAAACTACTTTT--ACCAAATGATGCAATTTCCCTAGAATGGAATTTTTG
66 TTGTTTACAAAATGACAAACT--TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* * * *
33458732 AAAAGTTGG-CGAAGGAATGGATCATCTTGACTATTCTCAGGAACCAAAGTTATAAAAGAACTCA
129 AAAA-TTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCA
* * * * * *
33458796 TGAATGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAAAGAGAAACGATTCTCATGTAAATAA
193 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * * * *
33458861 ATTTTTAATTTAAGGACCACAAGTTATTTACAAAATAACAAACTTTTTAGACCAAATGATGCTAT
258 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
* *** *
33458926 TT-CCTGAGCATGGAATGTTATGAAAATTGGAAAAAGGAATGGATCGTCTTGAACACTTTAAGGA
323 TTACC-GAGCATGGAATGTT-CGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* ***
33458990 A-CTGAAGATATAAAAGAACTTAAAAATGTTTGACAAGTTCAGAAG
386 ATC-GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * * * * * *
33459035 TTCGTTCAATAACAAACAAAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAAAACCAAGAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * *
33459100 TTGTTTACCAAATGACAAACTTTTTAGACCAAATGATAC-AATTCCTGAGCATGTAATGTTCGAA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-A
* * * * *
33459164 AAATTGGTCGAAGGAATGGATTGCCTTGAATTCTCTCAGGAACTGAAATTATAAAAGAACTCATA
130 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATA
* * * *
33459229 AATGTTTGACAAGTTTGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTATCACGTAAATAA--
195 AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * * * *
33459292 --TTATTTCAAAGACAAAAATTTGTTTACAAAATGAGAAACTATATAGGCCAAATGATGT-GACT
260 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGATT
* * * * * * * *
33459354 TCCCGAGCATGGAATGCTAGAAAATTGCTCAAAAGAATGGATCGTCTTTAATAATTTAAGGAA-C
324 TACCGAGCATGGAATGTTCGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC
* *
33459418 TGAAGTTAT-AAAGAACTCATAAATGTTTGACAAGATT-GGAAG
389 -GAAGTTATAAAAGAACTCGTAAATGTTTGACAAG-TTCAGAAG
* * * *
33459460 TTCGTCCAAGATCCAAGAGACAAACAATTCTCACATAAATAAAGTTTTTAATTCAAAAACCAAAA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-AAGTTTTTAATTCAAAGACCAAAA
* * * * * *
33459525 GTTGTTTACAAGATGAAAAACTACTTT-GACCAAATGATGCGATTTCTCAAGAATGGAATGTTCG
65 GTTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-
* * *
33459589 GAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACCGAAGTTAGAAAATAACTCA
128 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCA
* * * * *
33459654 TAAATGTTTGACAAGTT-AGAACGTTTGTCCAAGAACCAACAGAGAAACAATTCTCACTTCAATA
193 TAAATGTTTGACAAGTTCGGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
33459718 AGTTTTTAATTCAAAGACCAAAAGTTG---------T-------T-TTT--ACCAAATGATTCCA
257 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * ** * * *
33459764 TTTTATCGAG-AGTGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCCCCTTGAATACTCTCAT
322 -TTTACCGAGCA-TGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * *
33459828 GAATCGAAGTTATAAAAGAACTAGCAAATGTTTGAGAGGTTAAGAAG
384 GAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * * * * * *
33459875 TTTGTCTAAGAACCAAAAGAGAAATAATTCTCATGTAAATAAGTTTCTAATTCAAACACCACAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
33459940 TTGTTTACAAAATGACAAA-TTTTTAGACCAAATGATGTGATTTCCTGAGCATAGAATGTTAGAA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-A
* * * * * * * * * * *
33460004 AAATTAGACGAAGCAATGGTTTGTCTTGAATGA-TTTAACGAATCAAAGTTATAAAAGAACTCAA
130 AAATTGGTCGAAGGAATGGATCGTCTTGAAT-ACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
* ** * * * *
33460068 AAATGTTTGACATGTTCAAAAGTTTGTCCAAGAACCAACA-ATGAAACAATTCTCACCTAAAAAA
194 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAATAA
* * **
33460132 GTTTTTAATTCAACA-ACCAAAAGTTGTTTTCAAAATGACAAACTTTTTAGACCAAATGAAGCGA
258 GTTTTTAATTCAA-AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * * *
33460196 -TT-CTCGAGCTTGGAATGTTCAAAAAATTTGTCGAAGGAATGGATCGTCTTGAATACTCTCAA-
322 TTTAC-CGAGCATGGAATGTTC-GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAG
* * **
33460258 GAATCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAATTTGGAAG
384 GAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* *
33460305 TTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA----TTAATTCAAAGACAAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * **
33460366 TTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGACTTCCCGAGCATGGAATGTTAAAA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAA
* * * * **
33460431 AATTGGTCGAAGGAATTGATCATCTTGAATACTCTCAAGAATCGAAGTTATAAAAGAACTTGTAA
131 AATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATAA
* * * *
33460496 ATGTTTGACAAGTTCAGAAGTTTGCCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATATG-T
196 ATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
33460559 TTTAATTTAAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGCTGCGATTTA
261 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTA
* * * *
33460624 CCAAGAATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATTGTCTTGAATACTTTAAAGAA-CA
326 CCGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATC-
* * * *
33460688 AAAGTTTTAAAAGAACTCGTAAATGTTTGGCATGTTC-GAAAG
389 GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAG-AAG
* * * * * *
33460730 TTCGTCCAAGAACAAAGAGAGAAACAATTCTAACGTACATAAGTTTTTTATTCTAAGATCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
33460795 TTGTTTACAAAATGACAAACTGTTTAGACCAAATGATGTGATTTCCCGAGCATAGAATGTTCGAA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-A
* * * * * * *
33460860 AAATTGCTCGAAGGAATGGATCCTATTGAATTCTTTAAGGAACCGAAGTTATAAAAGAGCTCATA
130 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATA
* * *** *
33460925 AAAGTTTGACAAGTTTGGAAGTTC-AAGAAGAGCCAAGAGAGAAACAATTCTCACGTAAAT--GT
195 AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * * * *
33460987 TTTTTATTTAAAGACCAAAGGTTGATTACAAAATGACAAACCATTTAGATCAAATGATGCGATTT
260 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTT
** * * * * *
33461052 TTCGAGCACGGAATGTTTAGAAAATTGGTCGAAGGAATGCG-TTGTCCTGAATGCTTTAAGG-AT
325 ACCGAGCATGGAATG-TTCGAAAATTGGTCGAAGGAATG-GATCGTCTTGAATACTTTAAGGAAT
* * * * ** *
33461115 CAAAAGTTATAAAAGAACTCATAAAAGCTTGACAAGCGCAGATG
388 C-GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * *
33461159 TTCGGCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* **
33461224 TTGTTTACAAAATGACAAACTACTTTT--ACCAAATGATGCGATTTCCCAATAATGGAATGTTCA
66 TTGTTTACAAAATGACAAACT--TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-
* * * * * *
33461287 AAAAATTGGTCGAAGGAATGGATCGTCTTCAATACTC-CAAGAATCAAAGTTAAAAAAGAACTCG
128 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTC-
* * *
33461351 A-AAATGTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTTATGTAAATA
192 ATAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * *
33461415 AGTTTTTAATTTAGAGAGCAAAAGTTCTTTACAAAATGACAAACTATTTGGACCAAATGATGCGA
257 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * * *
33461480 CTTT-CCGAGCATGGAATGCTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGG
322 -TTTACCGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
33461544 AACCAAAGTTCTAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
385 AATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * * * * * * * *
33461590 TTCGTCCAAAAACTAATAGAGAAGCAATTCTAACTTAAATAAGTTTTTAATTTAATGACAAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * *
33461655 TTGTTTACAAAATTA-AATACTATTTAGACTC-AATGATGCAATTTCTCGAGCATGGAATGTTAG
66 TTGTTTACAAAATGACAA-ACTTTTTAGAC-CAAATGATGCGATTTCCCGAGCATGGAATGTT-C
* * * * * * * **
33461718 GAAAATTGATTGAAAGAATGGATCATCATGGATACTCTCAAGAATTGAAGTTATAAAAGAACTCA
128 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCA
* * *
33461783 TAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACATAAATAA
193 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
33461848 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGT-GA
258 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGA
* * *
33461912 TTT-CCTGAGAATGTAATGTTCCGAAAATTGGTTGAAGGAATGGATCGAAGGAATGGCTCATCTT
322 TTTACC-GAGCATGGAATGTT-CGAAAATTGGTCGAAGGAATGGATC---------G----TCTT
* * * * * *
33461976 GAATACTCTCAGGAATCGAAGTTATTAAAGAACTAGTAAATGTTTCACAAGTTCGGAAG
372 GAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * ** * * * * *
33462035 ATCTTTTAGGAACTAAGAGAGAAACAATTTTCACCTAAATAAGTTTTTAATTCAAAAACCAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * *
33462100 TGGTTTACAAAATAAAAAAACTATTTT-GACCAAATAATACGATTTCTCGAGCATGGAATGTTCG
66 TTGTTTACAAAAT-GACAAACT-TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-
* * * * * ** * * * *
33462164 GCAAATTGCTCTAAAGAATTGATCACCTTGAATACT-TTATGGAACTGATGTTACAAAAGAACTC
128 GAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCA-GGAACCGAAGTTATAAAAGAACTC
* * * *
33462228 GTAAAAGTTTGACAAGTTTGGAAATT-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
192 ATAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
33462292 AGTTTGTAATTCCAAGACCAAAAATTGTTTACAAAATTAAAAACTATTTAGACTC-AATGATGT-
257 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC-CAAATGAT-TC
* * * * *
33462355 GATTTCCCGAGCATTGAATGTTCGAAAAATTGGTCGAAGGAATGGATTGTCTTGAATACTCTCAG
320 GATTTACCGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * **
33462420 GAA-CTGAAGTTATAAAAGAACACGTAAATGTTTAACAAGTTTGGAAG
384 GAATC-GAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
**
33462467 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATATAAATAAGTTGTTTACAAATTCAAAGACCA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTT---AATTCAAAGACCA
* * * * * * * * * *
33462532 ACAGTTGTTAACAAATTCAAAAACTATATAGACCAAATGATGCGATTTCCCAAGCATGAAATTTT
62 AAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGT
* * *
33462597 TAGAAAATTGGTTG-AGAGAATGGATCGTCTTGAATACTCTTAGGAACCGAAGTTATAAAAGAAC
126 TCGAAAATTGGTCGAAG-GAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAAC
* * * * * *
33462661 TCGTAAATGTTTGACAAGTTTGAAAGTTCATCCGAGAACCAAGAGAGAAACAATTCTCACATAAA
190 TCATAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
33462726 TAAATTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACACACTATTTAGACCAAATGATGC
255 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTC
* * * * *
33462791 GATTT-CTCGAGCATGGAATGTTCAAAAAGTTGCTCAAATGAATGGGTCGTCTTGAATACTTTAA
320 GATTTAC-CGAGCATGGAATGTTCGAAAA-TTGGTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * *
33462855 GGAACCAAAGTTATAAAAGAACTCTTTAAA-GTTTGACTAGTTC-GTAAG
383 GGAATCGAAGTTATAAAAGAACTC-GTAAATGTTTGACAAGTTCAG-AAG
* * * *
33462903 TTCGTCTAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGCTTTTAATTCAAAGACCAAAAC
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
33462968 TTGTTTACAAAATGGCAAACAATTTTAG--CAAATGATGCTATTTCCCGAGCATGGAATGTTCGA
66 TTGTTTACAAAATGACAAAC-TTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-
* * * * *
33463031 AAAATTTGTTGAAGGGAATGGATCGTCTTGAATACTCTCAGGATA-TGAAATTATAAAAGAGCTC
129 AAAATTGGTCGAA-GGAATGGATCGTCTTGAATACTCTCAGGA-ACCGAAGTTATAAAAGAACTC
* * * * * * **
33463095 GTAAATGTTTGACATGTTCAGAAGTTTGTCCAAGAACCAAGAGAGAAGCAATTCTCATGTACGTA
192 ATAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
33463160 AGTTTTTAATTCAAAGGCCAAAAGTTGTTTAC-------C-AA--A--T-G-----ATG--T-GA
257 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * * * * * ** *
33463204 TTTCCCAAGCATGGAATGTTTGAAAAATAG-CTAAGAGGAATGGATCCCCTTGAATACTCTAAGG
322 TTTACCGAGCATGGAATGTTCGAAAATTGGTC-GA-AGGAATGGATCGTCTTGAATACTTTAAGG
* * *
33463268 AACCGAAGTTGTAAAAGAACTCGT-AATAGTTTGACTAGTT-AGTAAG
385 AATCGAAGTTATAAAAGAACTCGTAAAT-GTTTGACAAGTTCAG-AAG
* * * * * * *
33463314 TTCATCCAAGAACCAAGTGAGAAAAAATTCTCACATAAATAAGTTTTTATTTTAAAGAACAAAAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
** * *
33463379 TTGTTTACAAAATGACAAACAATTT-GACCAAATGATGCGATTTCTCAAGCATGGAATGTTCGAA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-A
* * *
33463443 AAATT-GTC-AAGGAGTGGATCGTCTTGAATACTCTCAGTAACCGAAGTTATAAAAGAACTCGTA
130 AAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATA
* ** * * *
33463506 AATGTTTAACAAGTTCTAAAGTTCGTCTAAGAACCAAGAGAGAAACGATTCTCACATAAATAAGT
195 AATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* *
33463571 TTTTAATTCGAAGACAAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATAT-GATT
260 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGATT
**
33463635 TACCGAGCATGGAATGTTCGAAAAGTTTCTC-AATGGAATGGATCGTCTTGAATACTTTAAGGAA
324 TACCGAGCATGGAATGTTCGAAAA-TTGGTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAA
* * *
33463699 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTC-GTAAG
387 TCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAG-AAG
* * *
33463743 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCGAAGACCAAATG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * ** * * *
33463808 TTGTTTACGAAATGACAATCAATTT-GACCAAATGATGCGATTTCTCGGGCATGAAATGTTCTGA
66 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GA
* * * * * * *
33463872 AAATTTGTCGAAGGGAACGGATCATCTTGAATACTCTCAGGAATCGAAGTTCTGAAAGAACTCGT
130 AAATTGGTCGAA-GGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCAT
* * * * * *
33463937 AAATGTTTGACAGGTTCAGAAGTTCATCCAAGAACCATGAGAGAAACAATTCTCGCGTAAA-ATG
194 AAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
33464001 TTTTAAATTCAAAGACCAAAATTTGTTTACAAAATAACAAACTTTTTAGACTAAATGATGCAATT
259 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATT
* * * * *
33464066 T-CTAGAGCATGGAATGTTTGAAAAATTTGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAA
324 TAC-CGAGCATGGAATGTTCG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
*
33464130 CCGAAG-T-T---AGAACTCGTAAATGTTTGACAAGTTC---A-
387 TCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
* * *
33464165 ----TCCACGAA-CAAGAGAGAAACAATTCTTACGTAAATAA-CTTTTAATTCAAATG-CCAAAA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAA
* * * * *
33464223 GTTGTTTACAAAATGACAAACTATTTT-TACCAAATGATGCGATTTCCTGAGAATGAAATGTTTA
65 GTTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTC
* * * * * * *
33464287 GAAAATCT-ATCGAAGGAGTGGATTGTCTTGAATACTCTCAAGAGCCAAAGTTATAAAAGTACTC
128 GAAAAT-TGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTC
* *
33464351 GTAAATATTTGACAA
192 ATAAATGTTTGACAA
33464366 ACATTATGAC
Statistics
Matches: 8728, Mismatches: 1435, Indels: 651
0.81 0.13 0.06
Matches are distributed among these distances:
407 1 0.00
408 125 0.01
409 6 0.00
410 10 0.00
411 196 0.02
412 17 0.00
413 171 0.02
414 93 0.01
415 59 0.01
416 89 0.01
417 70 0.01
418 11 0.00
419 1 0.00
420 2 0.00
421 1 0.00
422 3 0.00
423 2 0.00
424 60 0.01
425 342 0.04
426 767 0.09
427 1006 0.12
428 578 0.07
429 970 0.11
430 686 0.08
431 1035 0.12
432 1456 0.17
433 244 0.03
434 6 0.00
435 113 0.01
436 242 0.03
437 5 0.00
444 2 0.00
445 248 0.03
446 106 0.01
447 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (430 bp):
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAA
AATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTCATAA
ATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTA
CCGAGCATGGAATGTTCGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGA
AGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAG
Found at i:33459918 original size:198 final size:198
Alignment explanation
Indices: 33459578--33459945 Score: 517
Period size: 198 Copynumber: 1.9 Consensus size: 198
33459568 TTCTCAAGAA
* * ** *
33459578 TGGAATGTTCGGAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACCGAAGTTAG
1 TGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCCCCTTGAATACTCTCAGGAACCGAAGTTAG
* * *
33459643 AAAATAACTCATAAATGTTTGACAAGTTAGAACGTTTGTCCAAGAACCAACAGAGAAACAATTCT
66 AAAAGAACTCACAAATGTTTGACAAGTTAGAACGTTTGTCCAAGAACCAAAAGAGAAACAATTCT
* * *
33459708 CACTTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTTTACCAAATGATTCCATTTTATCGA
131 CACTTAAATAAGTTTCTAATTCAAACACCAAAAGTTGTTTTTACCAAATGATTCCATTTTATCGA
33459773 GAG
196 GAG
* * *
33459776 TGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCCCCTTGAATACTCTCATGAATCGAAGTTAT
1 TGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCCCCTTGAATACTCTCAGGAACCGAAGTTAG
* * * *
33459841 AAAAGAACT-AGCAAATGTTTGAGAGGTTAAGAA-GTTTGTCTAAGAACCAAAAGAGAAATAATT
66 AAAAGAACTCA-CAAATGTTTGACAAGTT-AGAACGTTTGTCCAAGAACCAAAAGAGAAACAATT
*
33459904 CTCA-TGTAAATAAGTTTCTAATTCAAACACCACAAGTTGTTT
129 CTCACT-TAAATAAGTTTCTAATTCAAACACCAAAAGTTGTTT
33459946 ACAAAATGAC
Statistics
Matches: 148, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
197 2 0.01
198 142 0.96
199 4 0.03
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (198 bp):
TGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCCCCTTGAATACTCTCAGGAACCGAAGTTAG
AAAAGAACTCACAAATGTTTGACAAGTTAGAACGTTTGTCCAAGAACCAAAAGAGAAACAATTCT
CACTTAAATAAGTTTCTAATTCAAACACCAAAAGTTGTTTTTACCAAATGATTCCATTTTATCGA
GAG
Found at i:33463329 original size:195 final size:196
Alignment explanation
Indices: 33462991--33464035 Score: 750
Period size: 216 Copynumber: 5.1 Consensus size: 196
33462981 GGCAAACAAT
* * * * * *
33462991 TTTAGCAAATGATGCT-ATTTCCCGAGCATGGAATGTTCGAAAAATTTGTTGAAGGGAATGGATC
1 TTTACCAAATGATGATGATTTCCCAAGCATGGAATGTTCGAAAAA-TTGCTCAAAGGAATGGATC
* * * *
33463055 GTCTTGAATACTCTCAGGATA-TGAAATTATAAAAGAGCTCGTAAATGTTTGAC-ATGTTCAG-A
65 GTCTTGAATACTCTAAGGA-ACCGAAGTTATAAAAGAACTCGTAAATGTTTGACTA-GTT-AGTA
* * ** ** *
33463117 AGTTTGTCCAAGAACCAAGAGAGAAGCAATTCTCATGTACGTAAGTTTTTAATTCAAAGGCCAAA
127 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAA
33463182 AGTTG
192 AGTTG
* *
33463187 TTTACCAAATGATG-TGATTTCCCAAGCATGGAATGTTTGAAAAATAGCT-AAGAGGAATGGATC
1 TTTACCAAATGATGATGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCAA-AGGAATGGATC
** *
33463250 CCCTTGAATACTCTAAGGAACCGAAGTTGTAAAAGAACTCGT-AATAGTTTGACTAGTTAGTAAG
65 GTCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAAT-GTTTGACTAGTTAGTAAG
* * * * * *
33463314 TTCATCCAAGAACCAAGTGAGAAAAAATTCTCACATAAATAAGTTTTTATTTTAAAGAACAAAAG
129 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAG
33463379 TTG
194 TTG
*
33463382 TTTACAAAATGACAAACAATTTGACCAAATGATGCGATTTCTCAAGCATGGAATGTTCGAAAAAT
1 TTTAC-------C--A-AA--TG-----ATGAT--GATTTCCCAAGCATGGAATGTTCGAAAAAT
* * *
33463447 TG-TC-AAGGAGTGGATCGTCTTGAATACTCTCAGTAACCGAAGTTATAAAAGAACTCGTAAATG
47 TGCTCAAAGGAATGGATCGTCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAATG
* * * * *
33463510 TTTAACAAGTT-CTAAAGTTCGTCTAAGAACCAAGAGAGAAACGATTCTCACATAAATAAGTTTT
112 TTTGACTAGTTAGT-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
* *
33463574 TAATTCGAAGACAAAAAGTTG
176 TAATTCAAAGACCAAAAGTTG
* * *
33463595 TTTACAAAATGACAAACTATTTAGACCAAATGATATGATTTACCGAGCATGGAATGTTCGAAAAG
1 TTTAC-------C-AA--A--T-G-----ATG--ATGATTTCCCAAGCATGGAATGTTCGAAAAA
* * * *
33463660 TTTCTCAATGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
46 TTGCTCAAAGGAATGGATCGTCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAAT
*
33463725 GTTTGACTAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
111 GTTTGACTAGTTAGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
* *
33463790 TAATTCGAAGACCAAATGTTG
176 TAATTCAAAGACCAAAAGTTG
* ** * *
33463811 TTTACGAAATGACAATCAATTTGACCAAATGATGCGATTTCTCGGGCATGAAATGTTCTGAAAAT
1 TTTAC-------C-A--AA--TG-----ATGAT--GATTTCCCAAGCATGGAATGTTC-GAAAAA
* * * * * * *
33463876 TTG-TCGAAGGGAACGGATCATCTTGAATACTCTCAGGAATCGAAGTTCTGAAAGAACTCGTAAA
46 TTGCTC-AAAGGAATGGATCGTCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * * * *
33463940 TGTTTGAC-AGGTTCAG-AAGTTCATCCAAGAACCATGAGAGAAACAATTCTCGCGTAAA-ATGT
110 TGTTTGACTA-GTT-AGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGT
* *
33464002 TTTAAATTCAAAGACCAAAATTTG
173 TTTTAATTCAAAGACCAAAAGTTG
*
33464026 TTTACAAAAT
1 TTTACCAAAT
33464036 AACAAACTTT
Statistics
Matches: 711, Mismatches: 93, Indels: 83
0.80 0.10 0.09
Matches are distributed among these distances:
194 8 0.01
195 120 0.17
196 40 0.06
202 1 0.00
203 1 0.00
204 1 0.00
205 4 0.01
207 3 0.00
211 1 0.00
212 6 0.01
213 138 0.19
214 41 0.06
215 90 0.13
216 254 0.36
217 2 0.00
218 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.29
Consensus pattern (196 bp):
TTTACCAAATGATGATGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCG
TCTTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACTAGTTAGTAAGTT
CGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT
G
Found at i:33463756 original size:216 final size:213
Alignment explanation
Indices: 33463190--33464364 Score: 1275
Period size: 216 Copynumber: 5.5 Consensus size: 213
33463180 AAAGTTGTTT
* * * * * * * **
33463190 ACCAAATGATGTGATTTCCCAAGCATGGAATGTTTGAAAAATAG-CTAAGAGGAATGGATCCCCT
1 ACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAATTTGTC-GA-AGGAATGGATCGTCT
* * *
33463254 TGAATACTCTAAGGAACCGAAGTTGTAAAAGAACTCGTAATAGTTTGACTAGTTAGTAAGTTCAT
64 TGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AGTTCGTAAGTTCAT
* * * * *
33463319 CCAAGAACCAAGTGAGAAAAAATTCTCACATAAATAAGTTTTTATTTTAAAGAACAAAAGTTGTT
128 CCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
*
33463384 TACAAAATGACAAACAATTTG
193 TACAAAATGACAAACTATTTG
* * *
33463405 ACCAAATGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGTC-AAGGAGTGGATCGTCTTG
1 ACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAATTTGTCGAAGGAATGGATCGTCTTG
* * * * *
33463469 AATACTCTCAGTAACCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTC-TAAAGTTCGTC
66 AATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AGTTCGT-AAGTTCATC
* * * *
33463533 TAAGAACCAAGAGAGAAACGATTCTCACATAAATAAGTTTTTAATTCGAAGACAAAAAGTTGTTT
129 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
33463598 ACAAAATGACAAACTATTTAG
194 ACAAAATGACAAACTATTT-G
** *
33463619 ACCAAATGATATGATTTAC-CGAGCATGGAATGTTCGAAAAGTTTCTC-AATGGAATGGATCGTC
1 ACCAAATGATGCGATTT-CTCGAGCATGGAATGTTCGAAAA-TTTGTCGAA-GGAATGGATCGTC
* *
33463682 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCG
63 TTGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AGTTCGTAAGTTCA
* *
33463747 TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCGAAGACCAAATGTTGT
127 TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * *
33463812 TTACGAAATGACAATCAATTTG
192 TTACAAAATGACAAACTATTTG
* * * *
33463834 ACCAAATGATGCGATTTCTCGGGCATGAAATGTTCTGAAAATTTGTCGAAGGGAACGGATCATCT
1 ACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAATTTGTCGAA-GGAATGGATCGTCT
* * * * *
33463899 TGAATACTCTCAGGAATCGAAGTTCTGAAAGAACTCGTAAATGTTTGACAGGTTCAG-AAGTTCA
64 TGAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-GTTC-GTAAGTTCA
* * * * * *
33463963 TCCAAGAACCATGAGAGAAACAATTCTCGCGTAAA-ATGTTTTAAATTCAAAGACCAAAATTTGT
127 TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* *
33464027 TTACAAAATAACAAACTTTTTAG
192 TTACAAAATGACAAACTATTT-G
* * * *
33464050 ACTAAATGATGCAATTTCTAGAGCATGGAATGTTTGAAAAATTTGTCGAAGGAATGGATCGTCTT
1 ACCAAATGATGCGATTTCTCGAGCATGGAATGTTCG-AAAATTTGTCGAAGGAATGGATCGTCTT
* *
33464115 GAATACTCTCAGGAACCGAAG-T-T---AGAACTCGTAAATGTTTG--A---C--AAGTTCATCC
65 GAATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAGTTCGTAAGTTCATCC
* * * *
33464168 ACGAA-CAAGAGAGAAACAATTCTTACGTAAATAA-CTTTTAATTCAAATG-CCAAAAGTTGTTT
130 AAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-GACCAAAAGTTGTTT
*
33464230 ACAAAATGACAAACTATTTTT
194 ACAAAATGACAAACTA-TTTG
* * * * * * *
33464251 ACCAAATGATGCGATTTC-CTGAGAATGAAATGTTTAGAAAATCTATCGAAGGAGTGGATTGTCT
1 ACCAAATGATGCGATTTCTC-GAGCATGGAATG-TTCGAAAATTTGTCGAAGGAATGGATCGTCT
* * *
33464315 TGAATACTCTCAA-GAGCCAAAGTTATAAAAGTACTCGTAAATA-TTTGACA
64 TGAATACTCT-AAGGAACCGAAGTTATAAAAGAACTCGTAAA-AGTTTGACA
33464365 AACATTATGA
Statistics
Matches: 824, Mismatches: 108, Indels: 63
0.83 0.11 0.06
Matches are distributed among these distances:
201 126 0.15
202 24 0.03
203 1 0.00
204 1 0.00
206 15 0.02
208 2 0.00
210 18 0.02
212 1 0.00
213 142 0.17
214 39 0.05
215 157 0.19
216 296 0.36
217 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (213 bp):
ACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAATTTGTCGAAGGAATGGATCGTCTTG
AATACTCTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAGTTCGTAAGTTCATCCA
AGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
AAAATGACAAACTATTTG
Found at i:33473857 original size:17 final size:18
Alignment explanation
Indices: 33473822--33473861 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
33473812 CCCAAAAGGC
*
33473822 ATCTTAGAAAACATTAGA
1 ATCTTAGAAAACATCAGA
*
33473840 ATCTT-GAACACATCAGA
1 ATCTTAGAAAACATCAGA
33473857 ATCTT
1 ATCTT
33473862 TCACCTTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.30
Consensus pattern (18 bp):
ATCTTAGAAAACATCAGA
Found at i:33479270 original size:25 final size:25
Alignment explanation
Indices: 33479237--33479285 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
33479227 TAATAAAATA
33479237 AATTCTCTC-TGAGCTTTCTTTTTTAG
1 AATTCTCTCTTGAG-TTT-TTTTTTAG
33479263 AATT-TCTCTTGAGTTTTTTTTTA
1 AATTCTCTCTTGAGTTTTTTTTTA
33479286 AAAATTGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 7 0.32
25 7 0.32
26 8 0.36
ACGTcount: A:0.16, C:0.14, G:0.10, T:0.59
Consensus pattern (25 bp):
AATTCTCTCTTGAGTTTTTTTTTAG
Found at i:33479291 original size:25 final size:27
Alignment explanation
Indices: 33479239--33479288 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 27
33479229 ATAAAATAAA
*
33479239 TTCTCTCTGAGCTTTCTTTTTTAGAAT
1 TTCTCTCTGAGCTTTCTTTTTTAAAAT
33479266 TTCTCT-TGAG-TTT-TTTTTTAAAA
1 TTCTCTCTGAGCTTTCTTTTTTAAAA
33479289 ATTGTAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.41
25 3 0.14
26 4 0.18
27 6 0.27
ACGTcount: A:0.18, C:0.14, G:0.10, T:0.58
Consensus pattern (27 bp):
TTCTCTCTGAGCTTTCTTTTTTAAAAT
Found at i:33483311 original size:25 final size:24
Alignment explanation
Indices: 33483254--33483311 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
33483244 ATTTTTAATT
33483254 AAATATTTTATTCTTTAAATTTTA
1 AAATATTTTATTCTTTAAATTTTA
* * * *
33483278 AAAGAATTTTTTTTTTGTAATTTTTA
1 AAA-TATTTTATTCTT-TAAATTTTA
33483304 AAATATTT
1 AAATATTT
33483312 ATCTTCTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 3 0.11
25 13 0.48
26 11 0.41
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (24 bp):
AAATATTTTATTCTTTAAATTTTA
Found at i:33493919 original size:24 final size:24
Alignment explanation
Indices: 33493873--33493919 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
33493863 TTTCATTAGC
*
33493873 ATGTGGTTTTTCATATTGGTCAAA
1 ATGTGGTTTTTCATATTGATCAAA
*
33493897 ATGTGGTTTTTCATATTTATCAA
1 ATGTGGTTTTTCATATTGATCAA
33493920 CAGGTGATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.49
Consensus pattern (24 bp):
ATGTGGTTTTTCATATTGATCAAA
Found at i:33496023 original size:27 final size:27
Alignment explanation
Indices: 33495993--33496046 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
33495983 ACATGTTGAG
*
33495993 TCAGCACT-TCATGTATTGCCATGACAA
1 TCAGCACTCTCAAG-ATTGCCATGACAA
*
33496020 TCAGCACTCTCAAGATTGCCTTGACAA
1 TCAGCACTCTCAAGATTGCCATGACAA
33496047 CAAAACTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
TCAGCACTCTCAAGATTGCCATGACAA
Found at i:33496806 original size:3 final size:3
Alignment explanation
Indices: 33496798--33496843 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
33496788 TAAGTTTTAT
33496798 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
33496844 AATACATTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33503337 original size:2 final size:2
Alignment explanation
Indices: 33503330--33503377 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
33503320 CCACGCCTAA
33503330 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33503372 AT AT AT
1 AT AT AT
33503378 CAAACATGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33509649 original size:30 final size:32
Alignment explanation
Indices: 33509609--33509680 Score: 78
Period size: 30 Copynumber: 2.3 Consensus size: 32
33509599 ATTCGAGAGC
* ** *
33509609 GCCTACGTGGAAGCGTTTTTGGGCA-AAAA-A
1 GCCTATGTGGAAGCACTTTTAGGCAGAAAACA
*
33509639 GCCTATGTGGATGCACTTTTAGGCAGAAAACA
1 GCCTATGTGGAAGCACTTTTAGGCAGAAAACA
33509671 -CCTATGTGGA
1 GCCTATGTGGA
33509681 TGTGCTTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 20 0.57
31 14 0.40
32 1 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (32 bp):
GCCTATGTGGAAGCACTTTTAGGCAGAAAACA
Found at i:33510005 original size:5 final size:5
Alignment explanation
Indices: 33509995--33510024 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
33509985 TTTAATTTGT
33509995 TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA
33510025 ATTTAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:33510039 original size:10 final size:10
Alignment explanation
Indices: 33510026--33510059 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
33510016 TATATTATAA
33510026 TTTAATTATT
1 TTTAATTATT
* *
33510036 TTTAATAATA
1 TTTAATTATT
33510046 TTTAATTATT
1 TTTAATTATT
33510056 TTTA
1 TTTA
33510060 TAACTTAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTAATTATT
Found at i:33511839 original size:17 final size:17
Alignment explanation
Indices: 33511796--33511839 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
33511786 TCGGGGAGCT
*
33511796 CAACTCAATTCCAATCGC
1 CAACTCAA-TACAATCGC
* *
33511814 CACCCCAATACAATCGC
1 CAACTCAATACAATCGC
33511831 CAACTCAAT
1 CAACTCAAT
33511840 TCTCACCACC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.41, G:0.05, T:0.18
Consensus pattern (17 bp):
CAACTCAATACAATCGC
Found at i:33512772 original size:134 final size:134
Alignment explanation
Indices: 33512623--33513040 Score: 525
Period size: 145 Copynumber: 3.0 Consensus size: 134
33512613 ATAATGGGTT
* *
33512623 ATTTAACAATAAATAATAAATATTTATAAAAATATTTAAATAATTTGAACAAAAATAAAAC-TTA
1 ATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTTGAATAAAAATAAAACATTA
*
33512687 AAACTTAATTCTTTTAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAATAAATGCTAAAA
66 AAA-TTAATTCTTTTAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAATAAATACTAAAA
*
33512752 TTGTA
130 TTGCA
33512757 ATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTTGAATAAAAATAAAACAAAA
1 ATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTTGAATAAAAATAAAAC----
* *
33512822 AAATAAAATTAAATTTAATTCATTCAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAATA
62 -ATTAAAATT-AA-TT-CTT--TT-AATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAATA
33512887 AATACTAAAATTGCA
120 AATACTAAAATTGCA
*
33512902 ATTTAACCATAAATAATAAATATTTATAAAAATAATTAAATAATTTGAATAAAAATAAAACAAAA
1 ATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTTGAATAAAAATAAAAC----
* * *
33512967 AAATATAAATAAATTTAATTCTTTCAATTTCTTAT-GGATTTTTTTACCTAAAATATATAAAATA
62 --AT-T--A-AAA-TTAATTCTTTTAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAATA
33513031 AATACTAAAA
120 AATACTAAAA
33513041 CCATAATTTA
Statistics
Matches: 254, Mismatches: 12, Indels: 26
0.87 0.04 0.09
Matches are distributed among these distances:
134 59 0.23
139 2 0.01
140 7 0.03
141 2 0.01
142 2 0.01
144 40 0.16
145 122 0.48
146 7 0.03
147 1 0.00
148 2 0.01
149 3 0.01
150 5 0.02
151 2 0.01
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (134 bp):
ATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTTGAATAAAAATAAAACATTA
AAATTAATTCTTTTAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAATAAATACTAAAAT
TGCA
Found at i:33512791 original size:19 final size:22
Alignment explanation
Indices: 33512755--33512814 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 22
33512745 GCTAAAATTG
*
33512755 TAATTTAACAATAAATAA-TAAA
1 TAATTTAATAA-AAATAATTAAA
33512777 T-ATTT-ATAAAAATAATTAAA
1 TAATTTAATAAAAATAATTAAA
33512797 TAATTTGAATAAAAATAA
1 TAATTT-AATAAAAATAA
33512815 AACAAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 6 0.18
20 8 0.24
21 8 0.24
22 1 0.03
23 10 0.30
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
TAATTTAATAAAAATAATTAAA
Found at i:33512852 original size:145 final size:145
Alignment explanation
Indices: 33512673--33513040 Score: 623
Period size: 145 Copynumber: 2.5 Consensus size: 145
33512663 TAATTTGAAC
* *
33512673 AAAAATAAAACTTAAAACTTAATTCTTTTAATTTGTTATGGGTTTTTTTTACCTAAAATATATAA
1 AAAAATAAAA-TT-AAATTTAATTCTTTCAATTTGTTATGGGTTTTTTTTACCTAAAATATATAA
* *
33512738 AATAAATGCTAAAATTGTAATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTT
64 AATAAATACTAAAATTGCAATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTT
33512803 GAATAAAAATAAAACAA
129 GAATAAAAATAAAACAA
*
33512820 AAAAATAAAATTAAATTTAATTCATTCAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAA
1 AAAAATAAAATTAAATTTAATTCTTTCAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAA
*
33512885 TAAATACTAAAATTGCAATTTAACCATAAATAATAAATATTTATAAAAATAATTAAATAATTTGA
66 TAAATACTAAAATTGCAATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTTGA
33512950 ATAAAAATAAAACAA
131 ATAAAAATAAAACAA
* *
33512965 AAAAATATAAA-TAAATTTAATTCTTTCAATTTCTTAT-GGATTTTTTTACCTAAAATATATAAA
1 AAAAATA-AAATTAAATTTAATTCTTTCAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAA
33513028 ATAAATACTAAAA
65 ATAAATACTAAAA
33513041 CCATAATTTA
Statistics
Matches: 211, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
144 38 0.18
145 158 0.75
146 5 0.02
147 10 0.05
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (145 bp):
AAAAATAAAATTAAATTTAATTCTTTCAATTTGTTATGGGTTTTTTTTACCTAAAATATATAAAA
TAAATACTAAAATTGCAATTTAACAATAAATAATAAATATTTATAAAAATAATTAAATAATTTGA
ATAAAAATAAAACAA
Found at i:33512936 original size:19 final size:22
Alignment explanation
Indices: 33512912--33512959 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
33512902 ATTTAACCAT
33512912 AAATAA-TAAAT-ATTT-ATAA
1 AAATAATTAAATAATTTAATAA
33512931 AAATAATTAAATAATTTGAATAA
1 AAATAATTAAATAATTT-AATAA
33512954 AAATAA
1 AAATAA
33512960 AACAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.24
20 5 0.20
21 4 0.16
23 10 0.40
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AAATAATTAAATAATTTAATAA
Found at i:33513068 original size:21 final size:20
Alignment explanation
Indices: 33513038--33513093 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
33513028 ATAAATACTA
*
33513038 AAACCATAATTTAAAAACCTT
1 AAACC-TAATTTAAAAACCCT
*
33513059 AAACTCTAATTTTAAAACCCT
1 AAAC-CTAATTTAAAAACCCT
33513080 AAACCTAA-TTAAAA
1 AAACCTAATTTAAAA
33513094 CTCTAAGGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 5 0.16
20 4 0.13
21 21 0.68
22 1 0.03
ACGTcount: A:0.52, C:0.20, G:0.00, T:0.29
Consensus pattern (20 bp):
AAACCTAATTTAAAAACCCT
Found at i:33514433 original size:18 final size:19
Alignment explanation
Indices: 33514405--33514447 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
33514395 TTTTTATCAT
*
33514405 TATAA-AAAATATTAATTC
1 TATAATAAAATATTAAATC
33514423 TA-AATAAAATATTAAATC
1 TATAATAAAATATTAAATC
33514441 TATAATA
1 TATAATA
33514448 TATATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 16 0.73
19 4 0.18
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TATAATAAAATATTAAATC
Found at i:33516788 original size:16 final size:16
Alignment explanation
Indices: 33516750--33516788 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
33516740 GTTTGGTTCG
33516750 CTGTAATGGAATACAA
1 CTGTAATGGAATACAA
* * *
33516766 GTCTAATGGAATAGAA
1 CTGTAATGGAATACAA
33516782 CTGTAAT
1 CTGTAAT
33516789 AAGTAATTCA
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATACAA
Found at i:33517027 original size:58 final size:59
Alignment explanation
Indices: 33516958--33517112 Score: 192
Period size: 58 Copynumber: 2.6 Consensus size: 59
33516948 AATTTTAATG
* *
33516958 ATTATTATTAAATATAATTTAATAAAAATATTA-ATTAATTTAATTATA-TTTTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATAATATA-TAATTTAATAATATTTTTAACATA
* *
33517016 ATTATTATTAAATACAATTTAAT-AAAATAATATATAATTTAATAATATTTTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAATATTTTTAACATA
* *
33517074 ATTATTATTAAAATATGAA-TTAGTAAAAATTATAATATA
1 ATTATTATT-AAATAT-AATTTAATAAAAATAAT-ATATA
33517113 TAATATTAGA
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
57 20 0.24
58 41 0.49
59 9 0.11
60 9 0.11
61 5 0.06
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (59 bp):
ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAATATTTTTAACATA
Found at i:33517106 original size:25 final size:24
Alignment explanation
Indices: 33517077--33517127 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
33517067 TAATATAATT
*
33517077 ATTATTAAAATATGA-ATTAGTAAAA
1 ATTA-TAAAATATAATATTAG-AAAA
*
33517102 ATTATAATATATAATATTAGAAAA
1 ATTATAAAATATAATATTAGAAAA
33517126 AT
1 AT
33517128 AATATATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (24 bp):
ATTATAAAATATAATATTAGAAAA
Found at i:33523412 original size:28 final size:28
Alignment explanation
Indices: 33523333--33523415 Score: 79
Period size: 25 Copynumber: 3.1 Consensus size: 28
33523323 CTCAGATTCA
33523333 AAAAAAGTTGAATCAGACCCAAATCAAT
1 AAAAAAGTTGAATCAGACCCAAATCAAT
*** *
33523361 --AAAAGCCAAAT-AGTA---AAACCAAT
1 AAAAAAGTTGAATCAG-ACCCAAATCAAT
33523384 AAAAAAGTTGAATCAGACCCAAATCAAT
1 AAAAAAGTTGAATCAGACCCAAATCAAT
33523412 AAAA
1 AAAA
33523416 GCAATTACCT
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
23 7 0.17
25 11 0.28
26 11 0.28
28 11 0.28
ACGTcount: A:0.58, C:0.17, G:0.10, T:0.16
Consensus pattern (28 bp):
AAAAAAGTTGAATCAGACCCAAATCAAT
Found at i:33528239 original size:18 final size:18
Alignment explanation
Indices: 33528195--33528241 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 18
33528185 ATTATTACCT
*
33528195 TTACTTATTATAATTTTA
1 TTACTTATTATATTTTTA
33528213 -T--TT-TT-TATTTTTA
1 TTACTTATTATATTTTTA
33528226 TTACTTATTATATTTT
1 TTACTTATTATATTTT
33528242 ATATATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 10
0.68 0.03 0.29
Matches are distributed among these distances:
13 7 0.30
14 3 0.13
15 2 0.09
16 2 0.09
17 3 0.13
18 6 0.26
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (18 bp):
TTACTTATTATATTTTTA
Found at i:33532893 original size:6 final size:6
Alignment explanation
Indices: 33532858--33532892 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
33532848 GCCCATGGTT
* *
33532858 GAGAAA GAGAAA GAGAAA GAAAAA GAGAAG GAGAA
1 GAGAAA GAGAAA GAGAAA GAGAAA GAGAAA GAGAA
33532893 GATGCCATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (6 bp):
GAGAAA
Found at i:33533744 original size:3 final size:3
Alignment explanation
Indices: 33533736--33533762 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
33533726 AAGTGTTATA
33533736 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
33533763 TCTAGGGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:33541963 original size:36 final size:35
Alignment explanation
Indices: 33541916--33542016 Score: 148
Period size: 36 Copynumber: 2.8 Consensus size: 35
33541906 TGGTAACAGG
*
33541916 CATGACCTTTGGGTTAATAGGGAGTCAAATAAGCAT
1 CATGACCTTTGGGTCAATAGGGAGT-AAATAAGCAT
* *
33541952 CATGACCTTTGGGTCAATAGGCAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAATAGGGAGT-AAATAAGCAT
*
33541988 CATGACCTTTGGGTCAACAGGGAGTAAAT
1 CATGACCTTTGGGTCAATAGGGAGTAAAT
33542017 CAAATATCGA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 4 0.07
36 55 0.93
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (35 bp):
CATGACCTTTGGGTCAATAGGGAGTAAATAAGCAT
Found at i:33546837 original size:36 final size:36
Alignment explanation
Indices: 33546786--33546884 Score: 162
Period size: 36 Copynumber: 2.8 Consensus size: 36
33546776 TGGTAATAAA
* *
33546786 CATGACCTTTTGGTCAACAGGGAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGAAGTAAAATGAGCAT
**
33546822 CATGACCTTTGGGTCAGTAGGAAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGAAGTAAAATGAGCAT
33546858 CATGACCTTTGGGTCAACAGGAAGTAA
1 CATGACCTTTGGGTCAACAGGAAGTAA
33546885 GCATGACCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.24
Consensus pattern (36 bp):
CATGACCTTTGGGTCAACAGGAAGTAAAATGAGCAT
Found at i:33546896 original size:28 final size:28
Alignment explanation
Indices: 33546858--33546912 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
33546848 AAATGAGCAT
33546858 CATGACCTTTGGGTCAACAGGAAGTAAG
1 CATGACCTTTGGGTCAACAGGAAGTAAG
*
33546886 CATGACCTTTGGGTCAACAGGGAGTAA
1 CATGACCTTTGGGTCAACAGGAAGTAA
33546913 ATCAAATATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (28 bp):
CATGACCTTTGGGTCAACAGGAAGTAAG
Found at i:33551780 original size:36 final size:36
Alignment explanation
Indices: 33551687--33551784 Score: 153
Period size: 35 Copynumber: 2.8 Consensus size: 36
33551677 TGGTAATAAA
* *
33551687 CATGACCTTTTGGTCAACAGGGAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGAAGTAAAATGAGCAT
**
33551723 CATGACC-TTGGGTCAGTAGGAAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGAAGTAAAATGAGCAT
33551758 CATGACCTTTGGGTCAACAGGAAGTAA
1 CATGACCTTTGGGTCAACAGGAAGTAA
33551785 GCATGACCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
35 31 0.56
36 24 0.44
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (36 bp):
CATGACCTTTGGGTCAACAGGAAGTAAAATGAGCAT
Found at i:33551796 original size:28 final size:28
Alignment explanation
Indices: 33551758--33551812 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
33551748 AAATGAGCAT
*
33551758 CATGACCTTTGGGTCAACAGGAAGTAAG
1 CATGACCTTTGAGTCAACAGGAAGTAAG
*
33551786 CATGACCTTTGAGTCAACAGGGAGTAA
1 CATGACCTTTGAGTCAACAGGAAGTAA
33551813 ATCAAATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (28 bp):
CATGACCTTTGAGTCAACAGGAAGTAAG
Found at i:33556608 original size:36 final size:35
Alignment explanation
Indices: 33556561--33556688 Score: 162
Period size: 36 Copynumber: 3.8 Consensus size: 35
33556551 TGGTATCAGA
33556561 CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGGAGTAAAAT-AGCAT
*
33556597 CATGACCTTTGGGTCAATAGGGAGTAAAATAAGCAT
1 CATGACCTTTGGGTCAACAGGGAGTAAAAT-AGCAT
* *
33556633 CATGACCTTTGAGTCAACAAGGAGT---A-AG---
1 CATGACCTTTGGGTCAACAGGGAGTAAAATAGCAT
33556661 CATGACCTTTGGGTCAACAGGGAGTAAA
1 CATGACCTTTGGGTCAACAGGGAGTAAA
33556689 TCAAATATCG
Statistics
Matches: 82, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
28 23 0.28
31 2 0.02
33 1 0.01
36 56 0.68
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (35 bp):
CATGACCTTTGGGTCAACAGGGAGTAAAATAGCAT
Found at i:33556667 original size:28 final size:28
Alignment explanation
Indices: 33556633--33556687 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
33556623 AAATAAGCAT
33556633 CATGACCTTTGAGTCAACAAGGAGTAAG
1 CATGACCTTTGAGTCAACAAGGAGTAAG
* *
33556661 CATGACCTTTGGGTCAACAGGGAGTAA
1 CATGACCTTTGAGTCAACAAGGAGTAA
33556688 ATCAAATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (28 bp):
CATGACCTTTGAGTCAACAAGGAGTAAG
Done.