Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 114 of 182
Found at i:37037851 original size:9 final size:10
Alignment explanation
Indices: 37037817--37037850 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
37037807 TTTGTTCCCA
*
37037817 TTTTATCATT
1 TTTTAGCATT
37037827 TTTTAGCATTT
1 TTTTAGCA-TT
37037838 TTTTAGCATT
1 TTTTAGCATT
37037848 TTT
1 TTT
37037851 AACTTAGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.68
Consensus pattern (10 bp):
TTTTAGCATT
Found at i:37046581 original size:17 final size:17
Alignment explanation
Indices: 37046540--37046581 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
37046530 AGTTAACTTT
*
37046540 CTTGCATTTTTATTCTG
1 CTTGCATTTTAATTCTG
*
37046557 CTTACATTTTAATTCT-
1 CTTGCATTTTAATTCTG
37046573 CGTTGCATT
1 C-TTGCATT
37046582 CAATTTAGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 1 0.05
17 20 0.95
ACGTcount: A:0.17, C:0.19, G:0.10, T:0.55
Consensus pattern (17 bp):
CTTGCATTTTAATTCTG
Found at i:37057797 original size:21 final size:21
Alignment explanation
Indices: 37057747--37057798 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
37057737 GGAGTTTTTA
*
37057747 GTATCGGTAGAAGCATGCTAT
1 GTATCGGTAGAAGCATACTAT
* *
37057768 GTTTTGGTAGAAGTCATACT-T
1 GTATCGGTAGAAG-CATACTAT
37057789 GTATCGGTAG
1 GTATCGGTAG
37057799 TATTGTCTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.35
Consensus pattern (21 bp):
GTATCGGTAGAAGCATACTAT
Found at i:37063682 original size:3 final size:3
Alignment explanation
Indices: 37063674--37063704 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
37063664 CTATCAGGGC
*
37063674 AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
37063705 TTCTTTAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37071441 original size:23 final size:23
Alignment explanation
Indices: 37071367--37071557 Score: 96
Period size: 23 Copynumber: 8.5 Consensus size: 23
37071357 TAAACGGAAC
* * *
37071367 AAACAGAGAGTAC-CGAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
* *
37071389 GAACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
37071411 GGGCAACAGAGAGCACACAAAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
*
37071437 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
* **
37071457 --AC--TGAGCACATGAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*** *
37071476 AATTGGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
37071499 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
*
37071524 AAACAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
37071547 AATCAGAGAGC
1 AAACAGAGAGC
37071558 GTGCTAGTGT
Statistics
Matches: 125, Mismatches: 28, Indels: 31
0.68 0.15 0.17
Matches are distributed among these distances:
16 8 0.06
18 3 0.02
19 1 0.01
20 1 0.01
21 1 0.01
22 18 0.14
23 56 0.45
24 2 0.02
25 27 0.22
26 8 0.06
ACGTcount: A:0.41, C:0.20, G:0.26, T:0.13
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Found at i:37071509 original size:25 final size:25
Alignment explanation
Indices: 37071481--37071557 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 25
37071471 GTGCTAATTG
37071481 GAGAGCACACACAGTGCTAATAACA
1 GAGAGCACACACAGTGCTAATAACA
*
37071506 GAGAGCACGAGAC-GTGCT-A-AACA
1 GAGAGCAC-ACACAGTGCTAATAACA
37071529 GAGAGCACACACAGTGCTAAT--CA
1 GAGAGCACACACAGTGCTAATAACA
37071552 GAGAGC
1 GAGAGC
37071558 GTGCTAGTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
22 3 0.07
23 25 0.54
24 2 0.04
25 13 0.28
26 3 0.07
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.10
Consensus pattern (25 bp):
GAGAGCACACACAGTGCTAATAACA
Found at i:37076335 original size:29 final size:27
Alignment explanation
Indices: 37076280--37076336 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
37076270 ATTTTAACAC
* * *
37076280 AATTTTCAATGTGGTACTTATAGTTTT
1 AATTTTCAATGTGGTACCTAAACTTTT
37076307 AATTTGTCTAATGTGGTACCTAAACTTTT
1 AATTT-TC-AATGTGGTACCTAAACTTTT
37076336 A
1 A
37076337 TTCCATATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.20
28 2 0.08
29 18 0.72
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (27 bp):
AATTTTCAATGTGGTACCTAAACTTTT
Found at i:37077980 original size:23 final size:20
Alignment explanation
Indices: 37077929--37077980 Score: 50
Period size: 23 Copynumber: 2.4 Consensus size: 20
37077919 TTGTTAATTC
*
37077929 ATTAAGTAATATATTTTATA
1 ATTAAATAATATATTTTATA
37077949 ATTTCAAATATATATATTTATACTA
1 A-TT-AAATA-ATATATTT-TA-TA
37077974 ATTAAAT
1 ATTAAAT
37077981 GAAGATTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 1 0.04
21 2 0.08
22 4 0.15
23 12 0.46
24 4 0.15
25 3 0.12
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTAAATAATATATTTTATA
Found at i:37078859 original size:18 final size:18
Alignment explanation
Indices: 37078836--37078872 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
37078826 TTATCACAAT
37078836 TTTTTAAATATATAATTA
1 TTTTTAAATATATAATTA
*
37078854 TTTTTAAATGTATAATTA
1 TTTTTAAATATATAATTA
37078872 T
1 T
37078873 CACAACTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTTTAAATATATAATTA
Found at i:37078862 original size:43 final size:41
Alignment explanation
Indices: 37078799--37078882 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 41
37078789 ATAATAATTG
* *
37078799 TAAATTAAATTATTAATAAATGTGTAATTATCACAATTTTT
1 TAAATTAAATTATTAATAAATGTATAATTATCACAACTTTT
**
37078840 TAAATATATAATTATTTTTAAATGTATAATTATCACAACTTTT
1 TAAAT-TA-AATTATTAATAAATGTATAATTATCACAACTTTT
37078883 ATTCTATTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 5 0.14
42 2 0.05
43 30 0.81
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.48
Consensus pattern (41 bp):
TAAATTAAATTATTAATAAATGTATAATTATCACAACTTTT
Found at i:37085279 original size:24 final size:24
Alignment explanation
Indices: 37085226--37085280 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
37085216 ATTTATTTTA
*
37085226 TTTTATTTTAGTATTTAATAATTT
1 TTTTATTTTAGTATTTAATAAATT
* *
37085250 TATTTATTTT-TTATTTATTGAAATT
1 T-TTTATTTTAGTATTTAAT-AAATT
37085275 TTTTAT
1 TTTTAT
37085281 ATAATCATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (24 bp):
TTTTATTTTAGTATTTAATAAATT
Found at i:37087619 original size:18 final size:18
Alignment explanation
Indices: 37087596--37087638 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
37087586 GCATAGGTTT
37087596 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
37087614 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
37087632 TTAATTA
1 TTAATTA
37087639 CACTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:37088265 original size:13 final size:12
Alignment explanation
Indices: 37088227--37088272 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
37088217 ATAGTAAAAG
*
37088227 AAATATATAATT
1 AAATAAATAATT
*
37088239 -ATTAAAT-ATT
1 AAATAAATAATT
37088249 AAATAAATAATT
1 AAATAAATAATT
37088261 AAAATAAATAAT
1 -AAATAAATAAT
37088273 ATGAATAGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
10 3 0.11
11 11 0.39
12 3 0.11
13 11 0.39
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATAAATAATT
Found at i:37088279 original size:13 final size:13
Alignment explanation
Indices: 37088241--37088272 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37088231 ATATAATTAT
37088241 TAAAT-ATT-AAA
1 TAAATAATTAAAA
37088252 TAAATAATTAAAA
1 TAAATAATTAAAA
37088265 TAAATAAT
1 TAAATAAT
37088273 ATGAATAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 5 0.26
12 3 0.16
13 11 0.58
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
TAAATAATTAAAA
Found at i:37090579 original size:15 final size:15
Alignment explanation
Indices: 37090549--37090588 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
37090539 TTTAAAAGTA
*
37090549 TTAAAAT-TATTTTT
1 TTAAAATATAATTTT
37090563 TTAAAATATAATTTT
1 TTAAAATATAATTTT
37090578 TTAAAATATAA
1 TTAAAATATAA
37090589 AATTATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTAAAATATAATTTT
Found at i:37090661 original size:23 final size:23
Alignment explanation
Indices: 37090635--37090700 Score: 91
Period size: 23 Copynumber: 2.9 Consensus size: 23
37090625 TTTTTTTTGT
37090635 TTCCCTTTCCCTTCCTCTTCCCC
1 TTCCCTTTCCCTTCCTCTTCCCC
37090658 TTCCCTTTCCC-TCCT-TCTCCCC
1 TTCCCTTTCCCTTCCTCT-TCCCC
*
37090680 TTCCCTTTTCCCTTCCCCTTC
1 TTCCC-TTTCCCTTCCTCTTC
37090701 TTCTTATTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
21 1 0.03
22 14 0.37
23 17 0.45
24 5 0.13
25 1 0.03
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (23 bp):
TTCCCTTTCCCTTCCTCTTCCCC
Found at i:37090694 original size:12 final size:12
Alignment explanation
Indices: 37090635--37090696 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
37090625 TTTTTTTTGT
37090635 TTCCC-TTTCCC
1 TTCCCTTTTCCC
*
37090646 TT-CCTCTTCCCC
1 TTCCCT-TTTCCC
37090658 TTCCC-TTTCCC
1 TTCCCTTTTCCC
*
37090669 -T-CCTTCTCCCC
1 TTCCCTT-TTCCC
37090680 TTCCCTTTTCCC
1 TTCCCTTTTCCC
37090692 TTCCC
1 TTCCC
37090697 CTTCTTCTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
9 2 0.05
10 4 0.10
11 11 0.28
12 17 0.43
13 6 0.15
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (12 bp):
TTCCCTTTTCCC
Found at i:37091737 original size:20 final size:21
Alignment explanation
Indices: 37091707--37091745 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
37091697 TTTTAGTAAT
37091707 TTTATATTTAAAAAAAATTAA
1 TTTATATTTAAAAAAAATTAA
*
37091728 TTTA-ATTTAAAAATAATT
1 TTTATATTTAAAAAAAATT
37091746 TAAAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTTATATTTAAAAAAAATTAA
Found at i:37091762 original size:29 final size:30
Alignment explanation
Indices: 37091712--37091775 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
37091702 GTAATTTTAT
37091712 ATTTAAAAAAAATTAATTTAATTTAAAAATA
1 ATTTAAAAAAAATTAA-TTAATTTAAAAATA
** * *
37091743 ATTTAAAAAATTTTAA-TAATTTTAAAATC
1 ATTTAAAAAAAATTAATTAATTTAAAAATA
37091772 ATTT
1 ATTT
37091776 GTTGACGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 15 0.52
31 14 0.48
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (30 bp):
ATTTAAAAAAAATTAATTAATTTAAAAATA
Found at i:37092947 original size:6 final size:6
Alignment explanation
Indices: 37092923--37093013 Score: 73
Period size: 6 Copynumber: 15.7 Consensus size: 6
37092913 GATTTATTTC
* * * **
37092923 TAAAAT TAAATT T-ACTT TAAATT TAAATT TAAATT CATTTT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* * *
37092970 TAAATT T-AGTT TAAATT TGAAA-- TAATTT TAAACT TAAATT TAAA
1 TAAATT TAAATT TAAATT T-AAATT TAAATT TAAATT TAAATT TAAA
37093014 ATCAATTACA
Statistics
Matches: 65, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
4 2 0.03
5 9 0.14
6 51 0.78
7 3 0.05
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (6 bp):
TAAATT
Found at i:37092948 original size:17 final size:17
Alignment explanation
Indices: 37092944--37093011 Score: 75
Period size: 17 Copynumber: 3.9 Consensus size: 17
37092934 TTACTTTAAA
*
37092944 TTTAAATTTAAATTCATT
1 TTTAAATTTAAATTTA-T
*
37092962 TTTAAATTTAAATTTAG
1 TTTAAATTTAAATTTAT
*
37092979 TTTAAATTTGAAA-TAAT
1 TTTAAATTT-AAATTTAT
*
37092996 TTTAAACTTAAATTTA
1 TTTAAATTTAAATTTA
37093012 AAATCAATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
16 3 0.07
17 21 0.50
18 18 0.43
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTAAATTTAAATTTAT
Found at i:37092973 original size:41 final size:42
Alignment explanation
Indices: 37092909--37092992 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 42
37092899 TAGATGGGTT
* *
37092909 TTTAGATTTATTTCTAAAATTAAATTTACTTTAAATTT-AAA
1 TTTAAATTCATTTCTAAAATTAAATTTACTTTAAATTTGAAA
* * *
37092950 TTTAAATTCATTTTTAAATTTAAATTTAGTTTAAATTTGAAA
1 TTTAAATTCATTTCTAAAATTAAATTTACTTTAAATTTGAAA
37092992 T
1 T
37092993 AATTTTAAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 33 0.89
42 4 0.11
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.52
Consensus pattern (42 bp):
TTTAAATTCATTTCTAAAATTAAATTTACTTTAAATTTGAAA
Found at i:37092992 original size:24 final size:24
Alignment explanation
Indices: 37092923--37093015 Score: 66
Period size: 23 Copynumber: 4.0 Consensus size: 24
37092913 GATTTATTTC
* * *
37092923 TAAAATTAAATTTACTTT-AAATT
1 TAAATTTAAATTAAATTTGAAATT
* * *
37092946 TAAATTTAAATTCATTTTTAAATT
1 TAAATTTAAATTAAATTTGAAATT
**
37092970 TAAATTTAGTTTAAATTTGAAA--
1 TAAATTTAAATTAAATTTGAAATT
* *
37092992 TAATTTTAAACTTAAATTTAAAAT
1 TAAATTTAAA-TTAAATTTGAAAT
37093016 CAATTACAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
22 7 0.13
23 26 0.47
24 22 0.40
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (24 bp):
TAAATTTAAATTAAATTTGAAATT
Found at i:37093863 original size:17 final size:18
Alignment explanation
Indices: 37093837--37093872 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
37093827 CACATTAAAT
*
37093837 ATATTTAATAAT-AATAA
1 ATATTAAATAATAAATAA
37093854 ATATTAAATAATAAATAA
1 ATATTAAATAATAAATAA
37093872 A
1 A
37093873 AAAAGAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
ATATTAAATAATAAATAA
Found at i:37094982 original size:60 final size:58
Alignment explanation
Indices: 37094884--37095189 Score: 267
Period size: 59 Copynumber: 5.2 Consensus size: 58
37094874 CCCTAGAAGT
** * * * * * *
37094884 CCCTAAACTACCTAAAAATTATATTTTGACCCCCAAACTTCTCCATAATTATATTTTGAC
1 CCCTAAACTTTCTAAAAATTACATTTTTACCCCTAAACTTC-CAAAAATTACATTTT-AC
*** *
37094944 CCCTAAACTTTCTAAAAATTACATTTTTACCCCTAAACTTTTTGAAAATTATATTTTAAC
1 CCCTAAACTTTCTAAAAATTACATTTTTACCCCTAAAC-TTCCAAAAATTACATTTT-AC
* * * *
37095004 CCCTAAACTTTC-CAAAATTCCATTTTTAACCATAAAACTTCCAAAAATTACATTTTAC
1 CCCTAAACTTTCTAAAAATTACATTTTTACCCCT-AAACTTCCAAAAATTACATTTTAC
* * * *
37095062 CTCTTAAC-TTCTAAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTACCATTTTAC
1 CCCTAAACTTTCTAAAAATTACATTTTT-ACCCCTAAACTTCCAAAAATTA-CATTTTAC
* ** * * * *
37095121 CCCTAAAC-TTCCAAAAGCTCCATTTTTGACCACAAAACTTTCAAAAATTACCATTTTAC
1 CCCTAAACTTTCTAAAAATTACATTTTT-ACCCCTAAACTTCCAAAAATTA-CATTTTAC
37095180 CCCTAAACTT
1 CCCTAAACTT
37095190 CCAAAACTCC
Statistics
Matches: 209, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
57 3 0.01
58 38 0.18
59 102 0.49
60 64 0.31
61 2 0.01
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.35
Consensus pattern (58 bp):
CCCTAAACTTTCTAAAAATTACATTTTTACCCCTAAACTTCCAAAAATTACATTTTAC
Found at i:37095051 original size:59 final size:57
Alignment explanation
Indices: 37094930--37095205 Score: 284
Period size: 59 Copynumber: 4.7 Consensus size: 57
37094920 ACTTCTCCAT
* * * * * ***
37094930 AATTATATTTTGACCCCTAAACTTTCTAAAAATTACATTTTT-ACCCCTAAACTTTTTGAA
1 AATTACATTTT-ACCCCTAAAC-TTC-CAAAATTCCATTTTTAACCACAAAAC-TTCCAAA
* *
37094990 AATTATATTTTAACCCCTAAACTTTCCAAAATTCCATTTTTAACCATAAAACTTCCAAA
1 AATTACATTTT-ACCCCTAAAC-TTCCAAAATTCCATTTTTAACCACAAAACTTCCAAA
* * * * *
37095049 AATTACATTTTACCTCTTAACTTCTAAAAATTCCATTTTTGACCCCAAAACTTCCAAA
1 AATTACATTTTACCCCTAAACTTC-CAAAATTCCATTTTTAACCACAAAACTTCCAAA
* * *
37095107 AATTACCATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTGACCACAAAACTTTCAAA
1 AATTA-CATTTTACCCCTAAACTTCCAAAA-TTCCATTTTTAACCACAAAACTTCCAAA
*
37095166 AATTACCATTTTACCCCTAAACTTCCAAAACTCCATTTTT
1 AATTA-CATTTTACCCCTAAACTTCCAAAATTCCATTTTT
37095206 GATCTCGATT
Statistics
Matches: 190, Mismatches: 22, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
57 3 0.02
58 56 0.29
59 99 0.52
60 32 0.17
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.36
Consensus pattern (57 bp):
AATTACATTTTACCCCTAAACTTCCAAAATTCCATTTTTAACCACAAAACTTCCAAA
Found at i:37095079 original size:28 final size:28
Alignment explanation
Indices: 37094884--37095195 Score: 239
Period size: 30 Copynumber: 10.6 Consensus size: 28
37094874 CCCTAGAAGT
* *
37094884 CCCTAAACTACCTAAAAATTATATTTTGAC
1 CCCTAAACTTCC-AAAAATTACATTTT-AC
* * * *
37094914 CCCCAAACTTCTCCATAATTATATTTTGAC
1 CCCTAAACTTC-CAAAAATTACATTTT-AC
*
37094944 CCCTAAACTTTCTAAAAATTACATTTTTAC
1 CCCTAAAC-TTCCAAAAATTACA-TTTTAC
*** *
37094974 CCCTAAACTTTTTGAAAATTATATTTTAAC
1 CCCTAAAC-TTCCAAAAATTACATTTT-AC
* *
37095004 CCCTAAACTTTCC-AAAATTCCATTTTTAA
1 CCCTAAAC-TTCCAAAAATTACA-TTTTAC
*
37095033 CCATAAAACTTCCAAAAATTACATTTTAC
1 CCCT-AAACTTCCAAAAATTACATTTTAC
* * * *
37095062 CTCTTAACTTCTAAAAATTCCATTTTTGAC
1 CCCTAAACTTCCAAAAATTACA-TTTT-AC
*
37095092 CCCAAAACTTCCAAAAATTACCATTTTAC
1 CCCTAAACTTCCAAAAATTA-CATTTTAC
** *
37095121 CCCTAAACTTCCAAAAGCTCCATTTTTGAC
1 CCCTAAACTTCCAAAAATTACA-TTTT-AC
* * *
37095151 CACAAAACTTTCAAAAATTACCATTTTAC
1 CCCTAAACTTCCAAAAATTA-CATTTTAC
37095180 CCCTAAACTTCCAAAA
1 CCCTAAACTTCCAAAA
37095196 CTCCATTTTT
Statistics
Matches: 226, Mismatches: 43, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
28 17 0.08
29 67 0.30
30 130 0.58
31 12 0.05
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.35
Consensus pattern (28 bp):
CCCTAAACTTCCAAAAATTACATTTTAC
Found at i:37095109 original size:117 final size:118
Alignment explanation
Indices: 37094930--37095207 Score: 341
Period size: 117 Copynumber: 2.4 Consensus size: 118
37094920 ACTTCTCCAT
* * * ***
37094930 AATTATATTTTGACCCCTAAACTTTCTAAAAATTACATTTTT-ACCCCTAAACTTTTTGAAAATT
1 AATTACATTTT-ACCCCTAAAC-TTCTAAAAATTCCATTTTTGACCCCAAAACTTTCCAAAAATT
* * *
37094994 A-TATTTTAACCCCTAAACTTTCCAAAA-TTCCATTTTTAACCATAAAACTTCCAAA
64 ACCATTTT-ACCCCTAAAC-TTCCAAAAGCTCCATTTTTAACCACAAAACTTCCAAA
* *
37095049 AATTACATTTTACCTCTTAACTTCTAAAAATTCCATTTTTGACCCCAAAAC-TTCCAAAAATTAC
1 AATTACATTTTACCCCTAAACTTCTAAAAATTCCATTTTTGACCCCAAAACTTTCCAAAAATTAC
* *
37095113 CATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTGACCACAAAACTTTCAAA
66 CATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTAACCACAAAACTTCCAAA
* *
37095166 AATTACCATTTTACCCCTAAACTTC-CAAAACTCCATTTTTGA
1 AATTA-CATTTTACCCCTAAACTTCTAAAAATTCCATTTTTGA
37095208 TCTCGATTTT
Statistics
Matches: 138, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
116 8 0.06
117 81 0.59
118 39 0.28
119 10 0.07
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.36
Consensus pattern (118 bp):
AATTACATTTTACCCCTAAACTTCTAAAAATTCCATTTTTGACCCCAAAACTTTCCAAAAATTAC
CATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTAACCACAAAACTTCCAAA
Found at i:37095239 original size:58 final size:59
Alignment explanation
Indices: 37094988--37095207 Score: 286
Period size: 59 Copynumber: 3.8 Consensus size: 59
37094978 AAACTTTTTG
* * * * *
37094988 AAAATTA-TATTTTAACCCCTAAACTTTCCAAAA-TTCCATTTTTAACCATAAAACTTCCA
1 AAAATTACCATTTT-ACCCCTAAAC-TTCCAAAAGCTCCATTTTTGACCACAAAACTTTCA
* * * ** * *
37095047 AAAATTA-CATTTTACCTCTTAACTTCTAAAAATTCCATTTTTGACCCCAAAACTTCCA
1 AAAATTACCATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTGACCACAAAACTTTCA
37095105 AAAATTACCATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTGACCACAAAACTTTCA
1 AAAATTACCATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTGACCACAAAACTTTCA
37095164 AAAATTACCATTTTACCCCTAAACTTCCAAAA-CTCCATTTTTGA
1 AAAATTACCATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTGA
37095208 TCTCGATTTT
Statistics
Matches: 145, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
57 7 0.05
58 50 0.34
59 88 0.61
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.34
Consensus pattern (59 bp):
AAAATTACCATTTTACCCCTAAACTTCCAAAAGCTCCATTTTTGACCACAAAACTTTCA
Found at i:37095312 original size:29 final size:29
Alignment explanation
Indices: 37095278--37095341 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
37095268 CTAAATTTTC
*
37095278 CCAAAATTACCATTTTGCCCCTCGAGAGT
1 CCAAAATTACCATTTTGCCCCCCGAGAGT
*
37095307 CCAAAATTACCATTTTGCCCCCCGAGTGT
1 CCAAAATTACCATTTTGCCCCCCGAGAGT
37095336 CCAAAA
1 CCAAAA
37095342 AGTCTCATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.25
Consensus pattern (29 bp):
CCAAAATTACCATTTTGCCCCCCGAGAGT
Found at i:37097706 original size:29 final size:30
Alignment explanation
Indices: 37097672--37097746 Score: 134
Period size: 29 Copynumber: 2.5 Consensus size: 30
37097662 TTATAATATT
37097672 AAATCTTTAATAATTTATTCTGTC-AAAAA
1 AAATCTTTAATAATTTATTCTGTCAAAAAA
37097701 AAATCTTTAATAATTTATTCTGTCAAAAAA
1 AAATCTTTAATAATTTATTCTGTCAAAAAA
*
37097731 AAATCTTCAATAATTT
1 AAATCTTTAATAATTT
37097747 GTTAAATCTG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
29 24 0.55
30 20 0.45
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.41
Consensus pattern (30 bp):
AAATCTTTAATAATTTATTCTGTCAAAAAA
Found at i:37101672 original size:28 final size:28
Alignment explanation
Indices: 37101603--37101681 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 28
37101593 TGCTCTGCAT
* *
37101603 TCTGGCTCGTAAA-AGCG-TAACTCTGTAC
1 TCTGGCTCG-AAAGAGCGAT-ATTCTGGAC
*
37101631 TCTGGCTCGCAAGAGCGATATTCTGGAC
1 TCTGGCTCGAAAGAGCGATATTCTGGAC
* *
37101659 TCTGGCTTGAAAGAGCGTTATTC
1 TCTGGCTCGAAAGAGCGATATTC
37101682 AATTTCTTGC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
27 2 0.05
28 40 0.93
29 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (28 bp):
TCTGGCTCGAAAGAGCGATATTCTGGAC
Found at i:37101760 original size:27 final size:27
Alignment explanation
Indices: 37101718--37101842 Score: 83
Period size: 27 Copynumber: 4.7 Consensus size: 27
37101708 TCTATTCTAG
* ** *
37101718 GCTCGAATGAGTTATATTTTGTTTTGA
1 GCTCGAATGAGCTATATTCAGTTCTGA
* *
37101745 GCTTGAATGAGCTATATTCAGTTCTGG
1 GCTCGAATGAGCTATATTCAGTTCTGA
* * *
37101772 GCTCGAATGAGCTACATTCTA-TTTTGG
1 GCTCGAATGAGCTATATTC-AGTTCTGA
* * ** * *
37101799 GCTCAAATGAGCAATAACCTG-TCTGG
1 GCTCGAATGAGCTATATTCAGTTCTGA
*
37101825 GCTCAAATGAGCTATATT
1 GCTCGAATGAGCTATATT
37101843 TCTATAATGG
Statistics
Matches: 77, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
26 19 0.25
27 57 0.74
28 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (27 bp):
GCTCGAATGAGCTATATTCAGTTCTGA
Found at i:37101797 original size:54 final size:54
Alignment explanation
Indices: 37101712--37101847 Score: 139
Period size: 54 Copynumber: 2.5 Consensus size: 54
37101702 CATTACTCTA
* * * * ** * **
37101712 TTCTAGGCTCGAATGAGTTATATTTTGTTTTGAGCTTGAATGAGCTATATTCAG
1 TTCTGGGCTCGAATGAGCTATATTCTATTTTGAGCTCAAATGAGCAATAACCAG
* * *
37101766 TTCTGGGCTCGAATGAGCTACATTCTATTTTGGGCTCAAATGAGCAATAACCTG
1 TTCTGGGCTCGAATGAGCTATATTCTATTTTGAGCTCAAATGAGCAATAACCAG
*
37101820 -TCTGGGCTCAAATGAGCTATATTTCTAT
1 TTCTGGGCTCGAATGAGCTATA-TTCTAT
37101848 AATGGCTTGA
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 19 0.28
54 48 0.72
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (54 bp):
TTCTGGGCTCGAATGAGCTATATTCTATTTTGAGCTCAAATGAGCAATAACCAG
Found at i:37104072 original size:29 final size:30
Alignment explanation
Indices: 37104002--37104081 Score: 94
Period size: 29 Copynumber: 2.7 Consensus size: 30
37103992 TTCGAGGAGC
37104002 AAAATGGTAATTTTAGGAAAATTTGGGGTTA
1 AAAATGGTAATTTTA-GAAAATTTGGGGTTA
** *
37104033 AAAAT-AAAATTTTAAAAAATTTGAGGG-T-
1 AAAATGGTAATTTTAGAAAATTTG-GGGTTA
37104061 AAAATGGTAATTTTAGAAAAT
1 AAAATGGTAATTTTAGAAAAT
37104082 CGAGATCAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
28 5 0.12
29 21 0.51
30 10 0.24
31 5 0.12
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (30 bp):
AAAATGGTAATTTTAGAAAATTTGGGGTTA
Found at i:37104152 original size:30 final size:30
Alignment explanation
Indices: 37104119--37104323 Score: 212
Period size: 29 Copynumber: 6.9 Consensus size: 30
37104109 TTCGGGGGAA
*
37104119 AAAAATGTAAATTTTGGAAGTTTGAGGGT-
1 AAAAATGTAATTTTTGGAAGTTTGAGGGTC
*
37104148 AAAAATAG-AATTTTTGGAAGTTCGAGGG-C
1 AAAAAT-GTAATTTTTGGAAGTTTGAGGGTC
37104177 AAAAATGTAATTTTTGGAAGTTTTGA-GGTC
1 AAAAATGTAATTTTTGGAAG-TTTGAGGGTC
* *
37104207 AAAAATGTAATTTTTGAAAGTTTAAGGGT-
1 AAAAATGTAATTTTTGGAAGTTTGAGGGTC
*
37104236 AAAAATGTAATTTTTAGAAGTTTTG-GGGTC
1 AAAAATGTAATTTTTGGAAG-TTTGAGGGTC
** *
37104266 AAAAATGTAATTTTAAAGAAG-TTCAGGGATC
1 AAAAATGTAATTTT-TGGAAGTTTGAGGG-TC
*
37104297 -AAAATATAATTTTTGGACAGTTT-AGGG
1 AAAAATGTAATTTTTGGA-AGTTTGAGGG
37104324 ACCTCAAGAG
Statistics
Matches: 150, Mismatches: 13, Indels: 25
0.80 0.07 0.13
Matches are distributed among these distances:
28 1 0.01
29 74 0.49
30 66 0.44
31 9 0.06
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.35
Consensus pattern (30 bp):
AAAAATGTAATTTTTGGAAGTTTGAGGGTC
Found at i:37104152 original size:59 final size:58
Alignment explanation
Indices: 37104087--37104319 Score: 186
Period size: 59 Copynumber: 3.9 Consensus size: 58
37104077 AAAATCGAGA
*
37104087 TCAAAAACGAAATTTTTGGACA-TTCGGGGGAAAAAAATGTAAATTTTGGAAG-TTTGAGGG
1 TCAAAAA-GAAATTTTTGGA-AGTTCGAGGG-AAAAAATGTAAATTTTGGAAGTTTTGA-GG
* * *
37104147 T-AAAAATAGAATTTTTGGAAGTTCGAGGGCAAAAATGTAATTTTTGGAAGTTTTGAGG
1 TCAAAAAGA-AATTTTTGGAAGTTCGAGGGAAAAAATGTAAATTTTGGAAGTTTTGAGG
* * ** * * * *
37104205 TCAAAAATGTAATTTTTGAAAGTTTAAGGGTAAAAATGTAATTTTTAGAAGTTTTGGGG
1 TCAAAAA-GAAATTTTTGGAAGTTCGAGGGAAAAAATGTAAATTTTGGAAGTTTTGAGG
* ** * * *
37104264 TCAAAAATGTAATTTTAAAGAAGTTC-AGGGATCAAAATATAATTTTTGGACAGTTT
1 TCAAAAA-GAAATTTT-TGGAAGTTCGAGGGA-AAAAATGTAAATTTTGGA-AGTTT
37104320 AGGGACCTCA
Statistics
Matches: 145, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
58 24 0.17
59 95 0.66
60 21 0.14
61 5 0.03
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (58 bp):
TCAAAAAGAAATTTTTGGAAGTTCGAGGGAAAAAATGTAAATTTTGGAAGTTTTGAGG
Found at i:37105469 original size:21 final size:20
Alignment explanation
Indices: 37105443--37105483 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
37105433 ATAATGTCAT
*
37105443 TTATTATTATTAAAACATTTA
1 TTATTATTATCAAAAC-TTTA
37105464 TTATTATTATCAAAACTTTA
1 TTATTATTATCAAAACTTTA
37105484 ATGCTGCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (20 bp):
TTATTATTATCAAAACTTTA
Found at i:37106306 original size:6 final size:6
Alignment explanation
Indices: 37106297--37106351 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
37106287 ACAAATAATA
* *
37106297 TTAAAT TTAAA- TTAAAT TCAAAC TTAAA- TTAAAT TTAAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
37106342 ATAAAT TTAA
1 TTAAAT TTAA
37106352 TTTCAAAGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
5 14 0.34
6 27 0.66
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (6 bp):
TTAAAT
Found at i:37106312 original size:11 final size:11
Alignment explanation
Indices: 37106296--37106351 Score: 69
Period size: 11 Copynumber: 5.0 Consensus size: 11
37106286 TACAAATAAT
37106296 ATTAAATTTAA
1 ATTAAATTTAA
*
37106307 ATTAAATTCAA
1 ATTAAATTTAA
37106318 ACTTAAA-TTAA
1 A-TTAAATTTAA
37106329 ATTTAAATTTAA
1 A-TTAAATTTAA
*
37106341 AATAAATTTAA
1 ATTAAATTTAA
37106352 TTTCAAAGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
11 29 0.74
12 10 0.26
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:37106313 original size:5 final size:5
Alignment explanation
Indices: 37106296--37106353 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
37106286 TACAAATAAT
*
37106296 ATTAA ATTTAA ATTAA ATTCAA ACTTAA ATTAA ATTTAA ATTTAA AATAA
1 ATTAA A-TTAA ATTAA ATT-AA A-TTAA ATTAA A-TTAA A-TTAA ATTAA
*
37106346 ATTTA ATT
1 ATTAA ATT
37106354 TCAAAGTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
5 22 0.48
6 22 0.48
7 2 0.04
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (5 bp):
ATTAA
Found at i:37106349 original size:17 final size:17
Alignment explanation
Indices: 37106278--37106366 Score: 92
Period size: 17 Copynumber: 5.2 Consensus size: 17
37106268 TAATGGACAT
37106278 TTTAAATTTACAAAT-AA
1 TTTAAATTTA-AAATAAA
*
37106295 TATTAAATTTAAATTAAA
1 T-TTAAATTTAAAATAAA
* * *
37106313 TTCAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
37106330 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
*
37106347 TTT-AATTTCAAAGTAAA
1 TTTAAATTT-AAAATAAA
37106364 TTT
1 TTT
37106367 TAAAATGGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
16 5 0.08
17 45 0.73
18 12 0.19
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:37107061 original size:92 final size:91
Alignment explanation
Indices: 37106968--37109387 Score: 3781
Period size: 92 Copynumber: 26.5 Consensus size: 91
37106958 ATTTGGTATC
* *
37106968 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
37107033 ACTTCAAAAGGATAGGAATTTG-GTATC
66 ACTTCAAGAGGATAGGAA-TTGAGT-TT
* * *
37107060 GAAGC-T--TC--A-TCTTGCT----CTTCAGAGGGATAAAGACTTGCTATCCAAATTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
37107115 ACTTCAAGGGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
37107142 GAAACTTCATCTTGCTCTTACAACAACTGT-AGAGAGATAAAGACTTGCTATCC-A--TTACTAC
1 GAAGCTTCATCTTACTCTTACTACAACT-TCAGAGAGATAAAGACTTGCTATCCAACTTTACTAC
*
37107203 AACTTCAAGAGGATAGAAATTGATGTTT
65 AACTTCAAGAGGATAGGAATTGA-GTTT
*
37107231 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
37107296 A-TTCAAGAGGATAGGAATTGATTTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
37107322 GAAGCTTCATCTTGCTCTTACTACAGCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37107387 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
*
37107414 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTCCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37107479 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
37107506 GAAACTTCATCTTGCTCTTACTACAACTTCAGAGGGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37107571 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
37107598 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
37107663 ACTTCAAGAGGATAGGAGTTAATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
*
37107690 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
37107755 A-TTCAAGAGGATAGGAATTGATTTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
37107781 GAAGCTTCATCTTGCTCTTACTACAGCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37107846 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
*
37107873 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTCCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37107938 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
37107965 GAAACTTCATCTTGCTCTTACTACAACTTCAGAGGGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37108030 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
37108057 GAAGCTTCATCTTACTCCTACTACAACTTCAGAGAGATAAATACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
37108122 ACTTCAAGAGGATAGGAGTTAATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
*
37108149 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCC-A--TTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37108211 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
*
37108238 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
37108303 ACTTCAAGAGGATAGGAATTGATTTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * * *
37108330 GAAGCTTCATCTTGCTCTTACTACAGCTTCAGAGAGATAAAGACTTCCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
37108395 ACTTCAAGAGGATAGGAATTGATTTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
37108422 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGTCTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
37108487 ACTTCAACAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * * *
37108514 GAAACTTCATCTTGCTCTTGCTACAACTTCAAAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37108579 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
37108606 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37108671 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
*
37108698 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37108763 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
37108790 GATA-CTTCATCTTGCTCTTACTACAA-TTGCAGATAGATAAAGACTTGCTATCCAACTTTACTA
1 GA-AGCTTCATCTTACTCTTACTACAACTT-CAGAGAGATAAAGACTTGCTATCCAACTTTACTA
37108853 CAACTTCAAGAGGATAGGAATTGATGTTT
64 CAACTTCAAGAGGATAGGAATTGA-GTTT
*
37108882 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37108947 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
37108974 AAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
37109039 ACTTCAAGAGGATAGGAACTGATTTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
37109066 GAAGCTTCATCTTGCTC-TACTACAACTTTAGAGAGATAAAGTCTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37109130 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
37109157 GATA-CTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAAACTTGCTATCCAACTTTACTAC
1 GA-AGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTAC
37109221 AACTTCAAGAGGATAGGAATTGATGTTT
65 AACTTCAAGAGGATAGGAATTGA-GTTT
* *
37109249 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTACTATCCAACTTTACTACA
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
37109314 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
37109341 GAATCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAAACTTG
1 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTG
37109388 TTGTTTTGAT
Statistics
Matches: 2186, Mismatches: 113, Indels: 58
0.93 0.05 0.02
Matches are distributed among these distances:
81 3 0.00
82 57 0.03
83 3 0.00
85 2 0.00
86 6 0.00
88 6 0.00
89 170 0.08
90 2 0.00
91 260 0.12
92 1673 0.77
93 4 0.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (91 bp):
GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
ACTTCAAGAGGATAGGAATTGAGTTT
Found at i:37109655 original size:50 final size:50
Alignment explanation
Indices: 37109511--37109951 Score: 285
Period size: 50 Copynumber: 8.8 Consensus size: 50
37109501 AAATCTTCGT
* ** * *
37109511 GGTATTGGATCCACCGTTGCGGTCTTAGATCTTTCCCTTCATG-CTTCTGA
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTCTT-TGC
* * * * * *
37109561 GGTACACGGTTTACCGTC---GCGAT-TTAGACCTTTCACTT-TTGTCTTTGC
1 GGTAC-TGG-AT-CCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTCTTTGC
* * * * *
37109609 GGTCCTGGATCCGTTGTCGCGGTCTTACATCTTTCCCTTCGTGTCTTCTGA
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTCTT-TGC
*** * * * * * *
37109660 GGTACACAATCTGCCGTTGC-GACTTAGACCTTTCCCTT-TTTTAACTTTGC
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGT--CTTTGC
* * **
37109710 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTAT
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTCTTTGC
* * * *
37109760 GGTACTGGATCCGCCGTTGTGGTCTTAGATCTTTCTCTTCGTGTCTTTTGA
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTC-TTTGC
* * * * * *
37109811 GGTACACGG-TCCGTCATTGC-GACTTAGACCTTTCCCTTTTGTATCTTTGC
1 GGTAC-TGGATCCGTCGTTGCGGTCTTAGATCTTTCCC-TTCGTGTCTTTGC
* * * *
37109861 GGTACTGGATCCGTCGTTGCGATCTTAGATCTTT-CCTGTTGTGTTTTTGT
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCT-TCGTGTCTTTGC
* *
37109911 GGTATTGGATCCG-CTGTTGTGGTCTTAGATCTTTCCCTTCG
1 GGTACTGGATCCGTC-GTTGCGGTCTTAGATCTTTCCCTTCG
37109952 AATTTCATGT
Statistics
Matches: 293, Mismatches: 76, Indels: 44
0.71 0.18 0.11
Matches are distributed among these distances:
45 4 0.01
46 1 0.00
47 2 0.01
48 12 0.04
49 34 0.12
50 163 0.56
51 69 0.24
52 5 0.02
53 3 0.01
ACGTcount: A:0.12, C:0.24, G:0.23, T:0.41
Consensus pattern (50 bp):
GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTCTTTGC
Found at i:37109742 original size:101 final size:99
Alignment explanation
Indices: 37109511--37109753 Score: 308
Period size: 101 Copynumber: 2.4 Consensus size: 99
37109501 AAATCTTCGT
* ** * ** *
37109511 GGTATTGGATCCACCGTTGCGGTCTTAGATCTTTCCCTTCATG-CTTCTGAGGTACACGGTTTAC
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTCTTCTGAGGTACACAATCTAC
*
37109575 CGTCGCGATTTAGACCTTTCACTTTTGTCTTTGC
66 CGTCGCGACTTAGACCTTTCACTTTTGTCTTTGC
* * * * *
37109609 GGTCCTGGATCCGTTGTCGCGGTCTTACATCTTTCCCTTCGTGTCTTCTGAGGTACACAATCTGC
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTCTTCTGAGGTACACAATCTAC
* * *
37109674 CGTTGCGACTTAGACCTTTCCCTTTTTTAACTTTGC
66 CGTCGCGACTTAGACCTTTCACTTTTGT--CTTTGC
*
37109710 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCGTCGTGT
1 GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGT
37109754 TTTTATGGTA
Statistics
Matches: 121, Mismatches: 21, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
98 35 0.29
99 41 0.34
101 45 0.37
ACGTcount: A:0.13, C:0.27, G:0.22, T:0.38
Consensus pattern (99 bp):
GGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTTCGTGTCTTCTGAGGTACACAATCTAC
CGTCGCGACTTAGACCTTTCACTTTTGTCTTTGC
Found at i:37109800 original size:151 final size:151
Alignment explanation
Indices: 37109629--37109951 Score: 502
Period size: 151 Copynumber: 2.1 Consensus size: 151
37109619 CCGTTGTCGC
* * *
37109629 GGTCTTACATCTTTCCCTTCGTGTCTTCTGAGGTACACAATCTGCCGTTGCGACTTAGACCTTTC
1 GGTCTTAGATCTTTCCCTTCGTGTCTTCTGAGGTACACAATCCGCCATTGCGACTTAGACCTTTC
* *
37109694 CCTTTTTTAACTTTGCGGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCGTCGTGTTTTTA
66 CCTTTTGTAACTTTGCGGTACTGGATCCGTCGTTGCGATCTTAGATCTTTCCCGTCGTGTTTTTA
37109759 TGGTACTGGATCCGCCGTTGT
131 TGGTACTGGATCCGCCGTTGT
* * ** *
37109780 GGTCTTAGATCTTTCTCTTCGTGTCTTTTGAGGTACACGGTCCGTCATTGCGACTTAGACCTTTC
1 GGTCTTAGATCTTTCCCTTCGTGTCTTCTGAGGTACACAATCCGCCATTGCGACTTAGACCTTTC
* * * *
37109845 CCTTTTGTATCTTTGCGGTACTGGATCCGTCGTTGCGATCTTAGATCTTTCCTGTTGTGTTTTTG
66 CCTTTTGTAACTTTGCGGTACTGGATCCGTCGTTGCGATCTTAGATCTTTCCCGTCGTGTTTTTA
* *
37109910 TGGTATTGGATCCGCTGTTGT
131 TGGTACTGGATCCGCCGTTGT
37109931 GGTCTTAGATCTTTCCCTTCG
1 GGTCTTAGATCTTTCCCTTCG
37109952 AATTTCATGT
Statistics
Matches: 155, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
151 155 1.00
ACGTcount: A:0.12, C:0.24, G:0.23, T:0.42
Consensus pattern (151 bp):
GGTCTTAGATCTTTCCCTTCGTGTCTTCTGAGGTACACAATCCGCCATTGCGACTTAGACCTTTC
CCTTTTGTAACTTTGCGGTACTGGATCCGTCGTTGCGATCTTAGATCTTTCCCGTCGTGTTTTTA
TGGTACTGGATCCGCCGTTGT
Found at i:37109815 original size:101 final size:101
Alignment explanation
Indices: 37109705--37109948 Score: 257
Period size: 101 Copynumber: 2.4 Consensus size: 101
37109695 CTTTTTTAAC
* *
37109705 TTTGCGGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCGTCGTGT-T-TTTATGGTACTGG
1 TTTGAGGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCC-TCGTGTATCTTTACGGTACTGG
* *
37109768 ATCCGCCGTTGTGGTCTTAGATCTTTCTCT-TCGTGTCT
65 ATCCGCCGTTGCGATCTTAGATCTTTC-CTGTCGTGT-T
* * * * ** *
37109806 TTTGAGGTACACGG-TCCGTCATTGC-GACTTAGACCTTTCCCTTTTGTATCTTTGCGGTACTGG
1 TTTGAGGTAC-TGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTCGTGTATCTTTACGGTACTGG
* *
37109869 ATCCGTCGTTGCGATCTTAGATCTTTCCTGTTGTGTT
65 ATCCGCCGTTGCGATCTTAGATCTTTCCTGTCGTGTT
* * *
37109906 TTTGTGGTATTGGATCCG-CTGTTGTGGTCTTAGATCTTTCCCT
1 TTTGAGGTACTGGATCCGTC-GTTGCGGTCTTAGATCTTTCCCT
37109949 TCGAATTTCA
Statistics
Matches: 116, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
99 7 0.06
100 33 0.28
101 74 0.64
102 2 0.02
ACGTcount: A:0.11, C:0.22, G:0.25, T:0.43
Consensus pattern (101 bp):
TTTGAGGTACTGGATCCGTCGTTGCGGTCTTAGATCTTTCCCTCGTGTATCTTTACGGTACTGGA
TCCGCCGTTGCGATCTTAGATCTTTCCTGTCGTGTT
Found at i:37111228 original size:15 final size:16
Alignment explanation
Indices: 37111200--37111251 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 16
37111190 TCGACCTCTC
37111200 CTTTTCTTTTTTCTTTT
1 CTTTTC-TTTTTCTTTT
37111217 CTTTTC-TTTTCTTTT
1 CTTTTCTTTTTCTTTT
*
37111232 CTTTTTCTTTTTTTTTT
1 C-TTTTCTTTTTCTTTT
37111249 CTT
1 CTT
37111252 CATTTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
15 10 0.31
16 7 0.22
17 15 0.47
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
CTTTTCTTTTTCTTTT
Found at i:37111247 original size:10 final size:10
Alignment explanation
Indices: 37111201--37111271 Score: 61
Period size: 10 Copynumber: 6.7 Consensus size: 10
37111191 CGACCTCTCC
37111201 TTTTCTTTTTT
1 TTTTC-TTTTT
*
37111212 CTTTTCTTTTC
1 -TTTTCTTTTT
37111223 TTTTCTTTTCT
1 TTTTCTTTT-T
37111234 TTTTCTTTTTT
1 TTTTC-TTTTT
**
37111245 TTTTCTTCAT
1 TTTTCTTTTT
* *
37111255 TTTTATTTGT
1 TTTTCTTTTT
37111265 TTTTCTT
1 TTTTCTT
37111272 CAGTGTATCT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
10 25 0.51
11 15 0.31
12 9 0.18
ACGTcount: A:0.03, C:0.14, G:0.01, T:0.82
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:37111248 original size:5 final size:5
Alignment explanation
Indices: 37111208--37111246 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
37111198 TCCTTTTCTT
37111208 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTTC TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTT
37111247 TTCTTCATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.12
5 24 0.73
6 5 0.15
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTC
Found at i:37116864 original size:29 final size:29
Alignment explanation
Indices: 37116832--37117029 Score: 168
Period size: 29 Copynumber: 6.8 Consensus size: 29
37116822 AAATCAAGAT
*
37116832 CAAAAATGAAATTTTTGGACA-TTCGGGGG
1 CAAAAATGTAATTTTTGGA-AGTTCGGGGG
* * *
37116861 CAAAAATGTACTTTATGGAAGTTCGAGGG
1 CAAAAATGTAATTTTTGGAAGTTCGGGGG
* *
37116890 C-AAAATGGAGTTTTTGGAAGTTCGGGGG
1 CAAAAATGTAATTTTTGGAAGTTCGGGGG
* * *
37116918 TAAAAATGTAATTTTTGGAAGTTTCAGGGT
1 CAAAAATGTAATTTTTGGAAG-TTCGGGGG
* * * ** *
37116948 TAAAAATGTAATTTGTGAAAGTTTCAAGGT
1 CAAAAATGTAATTTTTGGAAG-TTCGGGGG
* * *
37116978 CAAAAATGTAA-TTTTGAAAGTTTCAGGGT
1 CAAAAATGTAATTTTTGGAAG-TTCGGGGG
*
37117007 CAAAAATGTAATTTTTAGAAGTT
1 CAAAAATGTAATTTTTGGAAGTT
37117030 TTGGGGTTAA
Statistics
Matches: 144, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
28 24 0.17
29 70 0.49
30 50 0.35
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (29 bp):
CAAAAATGTAATTTTTGGAAGTTCGGGGG
Found at i:37116954 original size:30 final size:30
Alignment explanation
Indices: 37116862--37117065 Score: 186
Period size: 30 Copynumber: 6.9 Consensus size: 30
37116852 ATTCGGGGGC
* *
37116862 AAAAATGTACTTTATGGAAG-TTCGAGGG--
1 AAAAATGTAATTTTTGGAAGTTTC-AGGGTT
* * * * *
37116890 CAAAATGGAGTTTTTGGAAG-TTCGGGGGT
1 AAAAATGTAATTTTTGGAAGTTTCAGGGTT
37116919 AAAAATGTAATTTTTGGAAGTTTCAGGGTT
1 AAAAATGTAATTTTTGGAAGTTTCAGGGTT
* * * *
37116949 AAAAATGTAATTTGTGAAAGTTTCAAGGTC
1 AAAAATGTAATTTTTGGAAGTTTCAGGGTT
* *
37116979 AAAAATGTAA-TTTTGAAAGTTTCAGGGTC
1 AAAAATGTAATTTTTGGAAGTTTCAGGGTT
* **
37117008 AAAAATGTAATTTTTAGAAGTTTTGGGGTT
1 AAAAATGTAATTTTTGGAAGTTTCAGGGTT
* *
37117038 AAATATGTAATTTTGGAGAAGTTT-AGGG
1 AAAAATGTAATTTTTG-GAAGTTTCAGGG
37117066 GTCGAAATAC
Statistics
Matches: 146, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
27 3 0.02
28 19 0.13
29 44 0.30
30 73 0.50
31 7 0.05
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.35
Consensus pattern (30 bp):
AAAAATGTAATTTTTGGAAGTTTCAGGGTT
Found at i:37117046 original size:59 final size:58
Alignment explanation
Indices: 37116831--37117065 Score: 192
Period size: 59 Copynumber: 4.0 Consensus size: 58
37116821 AAAATCAAGA
* * ** ** * *
37116831 TCAAAAATGAAATTTTTGGACATTCGGGGGCAAAAATGTACTTTATGGAAG-TTCGAGGG
1 TCAAAAATGTAATTTTTGAAGTTTCGGGGTTAAAAATGTAATTT-TGAAAGTTTC-AGGG
* * * *
37116890 -C-AAAATGGAGTTTTTGGAAG-TTCGGGGGTAAAAATGTAATTTTTGGAAGTTTCAGGG
1 TCAAAAATGTAATTTTT-GAAGTTTCGGGGTTAAAAATGTAA-TTTTGAAAGTTTCAGGG
* * ** *
37116947 TTAAAAATGTAATTTGTGAAAGTTTCAAGGTCAAAAATGTAATTTTGAAAGTTTCAGGG
1 TCAAAAATGTAATTTTTG-AAGTTTCGGGGTTAAAAATGTAATTTTGAAAGTTTCAGGG
* *
37117006 TCAAAAATGTAATTTTTAGAAGTTTTGGGGTTAAATATGTAATTTTGGAGAAGTTT-AGGG
1 TCAAAAATGTAATTTTT-GAAGTTTCGGGGTTAAAAATGTAATTTT-GA-AAGTTTCAGGG
37117066 GTCGAAATAC
Statistics
Matches: 144, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
57 39 0.27
58 10 0.07
59 67 0.47
60 22 0.15
61 6 0.04
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (58 bp):
TCAAAAATGTAATTTTTGAAGTTTCGGGGTTAAAAATGTAATTTTGAAAGTTTCAGGG
Found at i:37118177 original size:3 final size:3
Alignment explanation
Indices: 37118169--37118221 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
37118159 TCCGTTTTCT
* * * * *
37118169 TTA TTA TTA TTA TTA ATA TTA TTA ATA ATG TCA TTTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
37118215 TTA TTA T
1 TTA TTA T
37118222 CAAAACTTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
3 39 0.95
4 2 0.05
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:37118762 original size:11 final size:11
Alignment explanation
Indices: 37118746--37118835 Score: 103
Period size: 11 Copynumber: 8.0 Consensus size: 11
37118736 TACAAATAAT
37118746 ATTAAATTTAA
1 ATTAAATTTAA
*
37118757 ATTAAATTCAA
1 ATTAAATTTAA
37118768 ACTTAAA-TTAA
1 A-TTAAATTTAA
37118779 ATTTAAATTTAA
1 A-TTAAATTTAA
*
37118791 ATTAAATTAAA
1 ATTAAATTTAA
37118802 ATTTAAA-TTAA
1 A-TTAAATTTAA
37118813 ATTAAAATTTAA
1 ATT-AAATTTAA
*
37118825 AATAAATTTAA
1 ATTAAATTTAA
37118836 TTTCAAAGTA
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
10 2 0.03
11 45 0.66
12 21 0.31
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:37118775 original size:17 final size:17
Alignment explanation
Indices: 37118731--37118832 Score: 134
Period size: 17 Copynumber: 5.9 Consensus size: 17
37118721 TGGACATTTT
*
37118731 AAATTTACAAATAATATT-
1 AAATTTA-AATTAA-ATTA
*
37118749 AAATTTAAATTAAATTC
1 AAATTTAAATTAAATTA
* *
37118766 AAACTTAAATTAAATTT
1 AAATTTAAATTAAATTA
37118783 AAATTTAAATTAAATTA
1 AAATTTAAATTAAATTA
37118800 AAATTTAAATTAAATTA
1 AAATTTAAATTAAATTA
*
37118817 AAATTTAAAATAAATT
1 AAATTTAAATTAAATT
37118833 TAATTTCAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
16 3 0.04
17 67 0.87
18 7 0.09
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATTTAAATTAAATTA
Found at i:37118847 original size:17 final size:16
Alignment explanation
Indices: 37118750--37118850 Score: 103
Period size: 17 Copynumber: 6.0 Consensus size: 16
37118740 AATAATATTA
*
37118750 AATTTAAATTAAATTCA
1 AATTTAAATTAAATT-T
*
37118767 AACTTAAATTAAATTT
1 AATTTAAATTAAATTT
*
37118783 AAATTTAAATTAAATTAA
1 -AATTTAAATTAAATT-T
*
37118801 AATTTAAATTAAATTAA
1 AATTTAAATTAAATT-T
*
37118818 AATTTAAAATAAATTT
1 AATTTAAATTAAATTT
*
37118834 AATTTCAAAGTAAATTT
1 AATTT-AAATTAAATTT
37118851 TAAAATGGTT
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
16 5 0.07
17 69 0.93
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (16 bp):
AATTTAAATTAAATTT
Found at i:37118848 original size:28 final size:27
Alignment explanation
Indices: 37118729--37118856 Score: 116
Period size: 29 Copynumber: 4.5 Consensus size: 27
37118719 AATGGACATT
37118729 TTAAATTTACAAATAATATTAAATTTAAA
1 TTAAATTTA-AAATAA-ATTAAATTTAAA
* *
37118758 TTAAATTCAAACTTAAATTAAATTTAAA
1 TTAAATTTAAA-ATAAATTAAATTTAAA
*
37118786 TTTAAA-TTAAATTAAAATTTAAA-TTAAA
1 -TTAAATTTAAAAT-AAA-TTAAATTTAAA
*
37118814 TTAAAATTTAAAATAAATTTAATTTCAAA
1 TT-AAATTTAAAATAAATTAAATTT-AAA
*
37118843 GTAAATTTTAAAAT
1 TTAAA-TTTAAAAT
37118857 GGTTTGGGCC
Statistics
Matches: 84, Mismatches: 6, Indels: 18
0.78 0.06 0.17
Matches are distributed among these distances:
27 8 0.10
28 37 0.44
29 39 0.46
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (27 bp):
TTAAATTTAAAATAAATTAAATTTAAA
Found at i:37118848 original size:34 final size:33
Alignment explanation
Indices: 37118731--37118849 Score: 132
Period size: 34 Copynumber: 3.5 Consensus size: 33
37118721 TGGACATTTT
* *
37118731 AAATTTACAAATAATATTAAATTTAAATTAAATTC
1 AAATTTA-AATTAA-ATTAAATTTAAATTAAATTA
*
37118766 AAACTTAAATTAAATTTAAATTTAAATTAAATTA
1 AAATTTAAATTAAA-TTAAATTTAAATTAAATTA
*
37118800 AAATTTAAATTAAATTAAAATTTAAAATAAATT-
1 AAATTTAAATTAAATT-AAATTTAAATTAAATTA
* *
37118833 TAATTTCAAAGTAAATT
1 AAATTT-AAATTAAATT
37118850 TTAAAATGGT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
33 8 0.11
34 60 0.81
35 6 0.08
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.40
Consensus pattern (33 bp):
AAATTTAAATTAAATTAAATTTAAATTAAATTA
Found at i:37126454 original size:13 final size:13
Alignment explanation
Indices: 37126436--37126469 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
37126426 TTATATGCGC
*
37126436 AAGAAAAGGAAAA
1 AAGAAAAAGAAAA
37126449 AAGAAAAAGAAAA
1 AAGAAAAAGAAAA
37126462 AAGAAAAA
1 AAGAAAAA
37126470 AACCAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAGAAAAAGAAAA
Found at i:37128531 original size:35 final size:35
Alignment explanation
Indices: 37128483--37128563 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
37128473 GTAAGCGCAT
* *
37128483 AAAATTAAGTAAATAAATAAATAAAAAC-AAAATAA
1 AAAAATAAATAAATAAA-AAATAAAAACTAAAATAA
* * * *
37128518 AACAATAAATAAATGAAAATTAAACACTAAAATAA
1 AAAAATAAATAAATAAAAAATAAAAACTAAAATAA
37128553 AAAAATAAATA
1 AAAAATAAATA
37128564 CAAATAATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 8 0.21
35 30 0.79
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (35 bp):
AAAAATAAATAAATAAAAAATAAAAACTAAAATAA
Found at i:37128542 original size:22 final size:23
Alignment explanation
Indices: 37128511--37128574 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 23
37128501 AAATAAAAAC
37128511 AAAATAAAACAAT-AAATAAATG
1 AAAATAAAACAATAAAATAAATG
* *
37128533 AAAATTAAACACTAAAATAAA--
1 AAAATAAAACAATAAAATAAATG
*
37128554 AAAATAAATACAA-ATAATAAA
1 AAAATAAA-ACAATAAAATAAA
37128575 AATAGCAAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
21 14 0.40
22 14 0.40
23 7 0.20
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (23 bp):
AAAATAAAACAATAAAATAAATG
Found at i:37128550 original size:23 final size:22
Alignment explanation
Indices: 37128511--37128574 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
37128501 AAATAAAAAC
37128511 AAAATAAAACAATAAATAAATG
1 AAAATAAAACAATAAATAAATG
* *
37128533 AAAATTAAACACTAAAATAAA--
1 AAAATAAAACAAT-AAATAAATG
37128554 AAAATAAATACAA-ATAATAAA
1 AAAATAAA-ACAATA-AATAAA
37128575 AATAGCAAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
20 1 0.03
21 13 0.37
22 14 0.40
23 7 0.20
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (22 bp):
AAAATAAAACAATAAATAAATG
Found at i:37128713 original size:5 final size:5
Alignment explanation
Indices: 37128705--37128744 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
37128695 ATTAAAAACA
*
37128705 AAAAT AAAAT AAAAT AAAGCT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAAA
37128745 ATTACAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 28 0.88
6 4 0.12
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:37128746 original size:16 final size:16
Alignment explanation
Indices: 37128699--37128744 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
37128689 GTACGAATTA
*
37128699 AAAACAAAAATAAAAT
1 AAAATAAAAATAAAAT
**
37128715 AAAATAAAGCTAAAAT
1 AAAATAAAAATAAAAT
37128731 AAAAT-AAAATAAAA
1 AAAATAAAAATAAAA
37128745 ATTACAATGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 7 0.28
16 18 0.72
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.15
Consensus pattern (16 bp):
AAAATAAAAATAAAAT
Found at i:37128892 original size:22 final size:22
Alignment explanation
Indices: 37128844--37128885 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
37128834 AAAGCAATTA
37128844 AAATAAAAAAGTGAAATTAAAGT
1 AAATAAAAAAGTGAAA-TAAAGT
37128867 AAATAAAAAA-TGAAA-AAAG
1 AAATAAAAAAGTGAAATAAAG
37128886 ACTAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
22 5 0.26
23 10 0.53
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (22 bp):
AAATAAAAAAGTGAAATAAAGT
Found at i:37129115 original size:24 final size:24
Alignment explanation
Indices: 37129066--37129115 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
37129056 AGAAAATCTA
*
37129066 AAAAAAATCATTTTTTTCTTTCTT
1 AAAAAAATCATTTTTCTCTTTCTT
37129090 AAAAAAATC-TCTCTTTCTCTTT-TT
1 AAAAAAATCAT-T-TTTCTCTTTCTT
37129114 AA
1 AA
37129116 GCTCTCAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 1 0.04
24 14 0.61
25 8 0.35
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (24 bp):
AAAAAAATCATTTTTCTCTTTCTT
Found at i:37129891 original size:20 final size:19
Alignment explanation
Indices: 37129863--37129913 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
37129853 ATTTGGTTTG
37129863 TTTTATATTTGGACTTAATA
1 TTTTATATTTGGA-TTAATA
* **
37129883 TTTTGTATTTGGATTTTTA
1 TTTTATATTTGGATTAATA
*
37129902 TTTTTTATTTGG
1 TTTTATATTTGG
37129914 GTTTAATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.20, C:0.02, G:0.14, T:0.65
Consensus pattern (19 bp):
TTTTATATTTGGATTAATA
Found at i:37130471 original size:16 final size:17
Alignment explanation
Indices: 37130450--37130484 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
37130440 AATTTATTTA
*
37130450 AATTAATTAA-TTTCTC
1 AATTAAATAATTTTCTC
37130466 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
37130483 AA
1 AA
37130485 CAAATTCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:37133281 original size:54 final size:54
Alignment explanation
Indices: 37133218--37133382 Score: 330
Period size: 54 Copynumber: 3.1 Consensus size: 54
37133208 CCACGAATTA
37133218 CTTCAAGTATGTTCTTGAACGATTCGAATCAAATCCAAAACCAAAAATAATTTT
1 CTTCAAGTATGTTCTTGAACGATTCGAATCAAATCCAAAACCAAAAATAATTTT
37133272 CTTCAAGTATGTTCTTGAACGATTCGAATCAAATCCAAAACCAAAAATAATTTT
1 CTTCAAGTATGTTCTTGAACGATTCGAATCAAATCCAAAACCAAAAATAATTTT
37133326 CTTCAAGTATGTTCTTGAACGATTCGAATCAAATCCAAAACCAAAAATAATTTT
1 CTTCAAGTATGTTCTTGAACGATTCGAATCAAATCCAAAACCAAAAATAATTTT
37133380 CTT
1 CTT
37133383 TAGTTTTAGT
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 111 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
CTTCAAGTATGTTCTTGAACGATTCGAATCAAATCCAAAACCAAAAATAATTTT
Found at i:37144576 original size:22 final size:22
Alignment explanation
Indices: 37144551--37144621 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 22
37144541 AAACAAGTGA
37144551 TTTAAATTTATTATTTATTATT
1 TTTAAATTTATTATTTATTATT
* * *
37144573 TTTAAA-TTA-AACTGA-TATT
1 TTTAAATTTATTATTTATTATT
** *
37144592 TTTTGATTGATTATTTATTATT
1 TTTAAATTTATTATTTATTATT
37144614 TTTAAATT
1 TTTAAATT
37144622 AAACTGATAT
Statistics
Matches: 35, Mismatches: 11, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
19 8 0.23
20 5 0.14
21 6 0.17
22 16 0.46
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (22 bp):
TTTAAATTTATTATTTATTATT
Found at i:37144593 original size:19 final size:19
Alignment explanation
Indices: 37144569--37144635 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
37144559 TATTATTTAT
37144569 TATTTTTAAATTAAACTGA
1 TATTTTTAAATTAAACTGA
** * * *
37144588 TATTTTTTGATTGATTATTTA
1 TATTTTTAAATT-A-AACTGA
37144609 TTATTTTTAAATTAAACTGA
1 -TATTTTTAAATTAAACTGA
37144629 TATTTTT
1 TATTTTT
37144636 TGATTGATGG
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
19 17 0.49
20 4 0.11
21 4 0.11
22 10 0.29
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (19 bp):
TATTTTTAAATTAAACTGA
Found at i:37144605 original size:41 final size:41
Alignment explanation
Indices: 37144560--37144643 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
37144550 ATTTAAATTT
37144560 ATTATTTATTATTTTTAAATTAAACTGATATTTTTTGATTG
1 ATTATTTATTATTTTTAAATTAAACTGATATTTTTTGATTG
37144601 ATTATTTATTATTTTTAAATTAAACTGATATTTTTTGATTG
1 ATTATTTATTATTTTTAAATTAAACTGATATTTTTTGATTG
37144642 AT
1 AT
37144644 GGCTAGACTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.58
Consensus pattern (41 bp):
ATTATTTATTATTTTTAAATTAAACTGATATTTTTTGATTG
Found at i:37144833 original size:92 final size:90
Alignment explanation
Indices: 37144659--37144834 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 90
37144649 GACTTGTGTT
* * * * ** *
37144659 CATACTCAAGTCCAAGTGCCCCAAAAATGAATATAATAAATAATGATTTCATAATTATCTTAGAA
1 CATACTCAAGTCCAAGTACCCCAAAAATAAATATAATAAAAAATAATTTCATAATTATCCCAAAA
37144724 ATTAAAAATAATATTTTTGCAACAC
66 ATTAAAAATAATATTTTTGCAACAC
***
37144749 CATACTCAAGTCCAAGTACCGTGAAAATAAAATATAATAAAAAATAATTTTCATAATTATCCCCA
1 CATACTCAAGTCCAAGTACCCCAAAAAT-AAATATAATAAAAAATAA-TTTCATAATTAT-CCCA
**
37144814 AAAATTTTAAA-AATATTTTTG
63 AAAATTAAAAATAATATTTTTG
37144835 TCACAGCCTA
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
90 24 0.34
91 15 0.21
92 22 0.31
93 10 0.14
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.32
Consensus pattern (90 bp):
CATACTCAAGTCCAAGTACCCCAAAAATAAATATAATAAAAAATAATTTCATAATTATCCCAAAA
ATTAAAAATAATATTTTTGCAACAC
Found at i:37146400 original size:52 final size:52
Alignment explanation
Indices: 37146338--37146663 Score: 291
Period size: 52 Copynumber: 6.1 Consensus size: 52
37146328 TTAAAGAAAT
*
37146338 TAAACGCATATATATAAGCTGACGAGCATAAACGTGTGCAAGCTGGGAAGCG
1 TAAACGCATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGGAAGCG
* * **
37146390 TAAACGCATATATATAAACTGACGAGCGCAAAATTGTGCAAGCTGGTG-AGCG
1 TAAACGCATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGG-GAAGCG
* * * * *
37146442 TAAACGCATATATATAAG-TCGATGAACGTAAATGTGTGCAAACTGGTAAGCG
1 TAAACGCATATATATAAGCT-GACGAGCGTAAACGTGTGCAAGCTGGGAAGCG
* * * *
37146494 CAAACACATATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGACG-AGTG
1 TAAACGC--ATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTG-GGAAGCG
** * * *
37146548 TAAGCACATATATATATAAGCTAAAGAGCGTAAACATGTGCAAGCTGGCGAA-CG
1 TAA--ACGCATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGG-GAAGCG
* * * **
37146602 TAAACGCATATATATATATATAGCTGATGAGCATAAACGTGTGCAAACTGACAAGCG
1 TAAACGC----ATATATATA-AGCTGACGAGCGTAAACGTGTGCAAGCTGGGAAGCG
37146659 TAAAC
1 TAAAC
37146664 ATTTGAAAAT
Statistics
Matches: 219, Mismatches: 38, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
51 1 0.00
52 93 0.42
53 1 0.00
54 77 0.35
55 2 0.01
56 14 0.06
57 31 0.14
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.22
Consensus pattern (52 bp):
TAAACGCATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGGAAGCG
Found at i:37146533 original size:54 final size:54
Alignment explanation
Indices: 37146345--37146664 Score: 305
Period size: 54 Copynumber: 5.9 Consensus size: 54
37146335 AATTAAACGC
* *
37146345 ATATATATAAGCTGACGAGCATAAACGTGTGCAAGCTGGGAAGCGTAAACGCAT
1 ATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGGAAGCGTAAACACAT
* ** *
37146399 ATATATA-AA-CTGACGAGCGCAAAATTGTGCAAGCTGGTG-AGCGTAAACGC--
1 ATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGG-GAAGCGTAAACACAT
* * * * * *
37146449 ATATATATAAG-TCGATGAACGTAAATGTGTGCAAACTGGTAAGCGCAAACACAT
1 ATATATATAAGCT-GACGAGCGTAAACGTGTGCAAGCTGGGAAGCGTAAACACAT
* * *
37146503 ATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGACG-AGTGTAAGCACAT
1 ATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTG-GGAAGCGTAAACACAT
* * * *
37146557 ATATATATAAGCTAAAGAGCGTAAACATGTGCAAGCTGGCGAA-CGTAAACGCATAT
1 ATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGG-GAAGCGTAAA--CACAT
* * * **
37146613 ATATATATATAGCTGATGAGCATAAACGTGTGCAAACTGACAAGCGTAAACA
1 ATATATATA-AGCTGACGAGCGTAAACGTGTGCAAGCTGGGAAGCGTAAACA
37146665 TTTGAAAATT
Statistics
Matches: 215, Mismatches: 36, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
50 7 0.03
51 3 0.01
52 64 0.30
53 3 0.01
54 89 0.41
55 4 0.02
56 15 0.07
57 30 0.14
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (54 bp):
ATATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGGGAAGCGTAAACACAT
Found at i:37153789 original size:82 final size:84
Alignment explanation
Indices: 37153638--37153874 Score: 381
Period size: 82 Copynumber: 2.8 Consensus size: 84
37153628 ATTTTCGATT
* *
37153638 TAGAAGTTAGTAGGTTTTGATTTGTGATTTTGGAGGGATTTAATTGTGTTAGATGTTATTTATAA
1 TAGAAGTTAGTAGGTTGTGATCTGTGATTTTGGAGGGATTTAATTGTGTTAGATGTTATTTATAA
37153703 TTCCTTTGAATTTTCA-GTA
66 TTCCTTTGAATTTT-AGGTA
* *
37153722 TAGAAGTTAGTAGGTTGTGATCTGTGATTTT-G-GGGATTTAATTGTGTTAGACGTTATTTTTAA
1 TAGAAGTTAGTAGGTTGTGATCTGTGATTTTGGAGGGATTTAATTGTGTTAGATGTTATTTATAA
*
37153785 TTCCTTTGAATTTTAGGTC
66 TTCCTTTGAATTTTAGGTA
* *
37153804 TAGAAGTTAGTAGGTTGTGATCTATGATTTTGGAGGGATTTAATTGTGTTAGATGTTGTTTATAA
1 TAGAAGTTAGTAGGTTGTGATCTGTGATTTTGGAGGGATTTAATTGTGTTAGATGTTATTTATAA
37153869 TTCCTT
66 TTCCTT
37153875 CGTATTATGT
Statistics
Matches: 141, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
81 1 0.01
82 75 0.53
83 2 0.01
84 63 0.45
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.48
Consensus pattern (84 bp):
TAGAAGTTAGTAGGTTGTGATCTGTGATTTTGGAGGGATTTAATTGTGTTAGATGTTATTTATAA
TTCCTTTGAATTTTAGGTA
Found at i:37155131 original size:24 final size:24
Alignment explanation
Indices: 37155090--37155168 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
37155080 ACAGGAGATG
*
37155090 GTAGGTGTCTT-GTTATAGGGGTTC
1 GTAGGTGT-TTGGTGATAGGGGTTC
* *
37155114 ATAGGTGTTTGGTGATAGGTGTTC
1 GTAGGTGTTTGGTGATAGGGGTTC
* * *
37155138 GCAAGTGTCTGGTGATAGGGGTTC
1 GTAGGTGTTTGGTGATAGGGGTTC
37155162 GTAGGTG
1 GTAGGTG
37155169 CTATGTGTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
23 2 0.05
24 42 0.95
ACGTcount: A:0.15, C:0.08, G:0.41, T:0.37
Consensus pattern (24 bp):
GTAGGTGTTTGGTGATAGGGGTTC
Found at i:37156767 original size:656 final size:656
Alignment explanation
Indices: 37155499--37156806 Score: 1912
Period size: 656 Copynumber: 2.0 Consensus size: 656
37155489 TTACCCCTAT
* * *
37155499 TACTTTTTCATTGTATTATGATGATCGAAGCATGTTTTAGGAGTGTTTAATTAAAAATTACTTAT
1 TACTTATTCATTGTATTATGATGATCGAAACATGTTTTAAGAGTGTTTAATTAAAAATTACTTAT
* * * *
37155564 TTAAGCATGTTCTAAATTGGTGTAATGATTGGTTTGTGATAAGTTGGTTGATTGGTAAGGAAAGT
66 TTAAGCATGTTCTAAATTGGTGTAAAGATTGGTTGGTGATAAGTTGGTTGATCGATAAGGAAAGT
* *
37155629 CATATTGGTGGTTAATGTGACGTTCAAAATTCGGGCTGGACCATCCCAATCGAGTTTGGGCACCA
131 CATATTGGTGGCTAATGTGACGTTCAAAATTCGGGCTGAACCATCCCAATCGAGTTTGGGCACCA
* ** *
37155694 CATTTCTCCTTCCAAAATCCACCAAACATTGGCTAAAATCTATCTTGTATTGTTTCAATAACTTT
196 CATTTCTCCTTCCAAAATCCACCAAACATTGGATAAAATCTATCTCCTATTGTTGCAATAACTTT
* *
37155759 CTTTTCAAATTTGTTTTGTTTTAACTCATTCTAATTGTTTGTTTTTTTATTTTCAGATTCAGATT
261 CTTTTCAAATTTGTTTTATTTTAACTCATTCTAATTGTTTGTTTTTTTATTTTCAAATTCAGATT
*
37155824 TTAAACATTTTCAGCAACTTGAAATCAATCCTCCACTGCTCTTTCTTAATTTCACTAATTTGCTA
326 TTAAACATTTTCAGCAACTTGAAATCAATCCTCCACTGCTCTTTCTCAATTTCACTAATTTGCTA
* * * *
37155889 AATAATATTTCTAACTTAGTTTGGTTGATCGATACACCAAAGAAGTGGTAATATGTCTTGAGAAC
391 AAGAATATTTCTAACTTAGTTTGGTTGATCGATACACCAAAGAAGTGGAAATAGGTCTTAAGAAC
* *
37155954 TTATTTCAACAATTGAGGTGATGGAATTGAGACCTTGAAGAAGAAATAGGAAACATCAACAAATT
456 TTATTTCAACAATCGAGGTGATGGAATTGAGACCTTGAAGAAGAAATAAGAAACATCAACAAATT
* * *
37156019 CTATGTGATTTAGGGATGGGAAGTTACAATGTAGACGAATGCCTGGGACTTTTGAATTGCATTCA
521 CTAGGTGATTTAGGGATGGGAAGTTACAATGTAAACGAATGCCTGGGAATTTTGAATTGCATTCA
* * * * * *
37156084 GTGAGGTGAAGCATTAATGAGAACACATTTTGGCAAAGTAGAATGAGGTATGGGGAAAGCGAGTT
586 ATGACGTGAAGCATTAATGACAACACATTTTGGCAAAGGAGAATGAGGTATGAGGAAAGCGACTT
37156149 TCTTTA
651 TCTTTA
* *
37156155 TACTTATTCTTTGTATTATGATGATCGAAACATGTTTTAAGAGTGTTTGATTAAAAATTACTTAT
1 TACTTATTCATTGTATTATGATGATCGAAACATGTTTTAAGAGTGTTTAATTAAAAATTACTTAT
* * * * * *
37156220 TTAAGCATGTTTTAAATTGGTGTAAAGGTTGGTTGGTGGTTAGTTGGTTGATCGATACGGAGAGT
66 TTAAGCATGTTCTAAATTGGTGTAAAGATTGGTTGGTGATAAGTTGGTTGATCGATAAGGAAAGT
* * * * **
37156285 CACT-TTGGTGGCTAATGTGACGTTCGAAATTCGAG-TCGAACCGTCCCGATCGAGTTTGGGGTG
131 CA-TATTGGTGGCTAATGTGACGTTCAAAATTCGGGCT-GAACCATCCCAATCGAGTTT-GGGCA
* * * *
37156348 CCACATTTTTCCTTCCAAAATCCATCAACCATTGGATAAAATCTATCTCCTATTGTTGCAATATC
193 CCACATTTCTCCTTCCAAAATCCACCAAACATTGGATAAAATCTATCTCCTATTGTTGCAATAAC
*
37156413 TTTCTTTTCAAATTTGTTTTATTTTAATTCATTCTAATTGTTTGTTTTTTGT-TTTT-AAATTCA
258 TTTCTTTTCAAATTTGTTTTATTTTAACTCATTCTAATTGTTTGTTTTTT-TATTTTCAAATTCA
* * * *
37156476 GATTTTAAACATTTTCAGCAACTTGAAATCGATCCTCCACTGTTCTTTCTCATTTTC-CTTGATT
322 GATTTTAAACATTTTCAGCAACTTGAAATCAATCCTCCACTGCTCTTTCTCAATTTCAC-TAATT
* * *
37156540 TGCTAAAGAATATTTTTAACTTAGTTTGGTTGATCGATAGATCAGAA-AAGTGGAAATAGGTCTT
386 TGCTAAAGAATATTTCTAACTTAGTTTGGTTGATCGATACACCA-AAGAAGTGGAAATAGGTCTT
*
37156604 AAGAACTTATTTCAACAATCGAGGTGATGGAATTGAGACCTTGAAGAAGAAATAAGAATCATCAA
450 AAGAACTTATTTCAACAATCGAGGTGATGGAATTGAGACCTTGAAGAAGAAATAAGAAACATCAA
* * * *
37156669 CAAATTCCT-GGTGATTTAGGGATGTGCAGTTGCGATGTAAACGAAT-CTCTGGGAATTTTGAAT
515 CAAATT-CTAGGTGATTTAGGGATGGGAAGTTACAATGTAAACGAATGC-CTGGGAATTTTGAAT
* *
37156732 TGCATTCAATGACTTGAAGCATTGATGACAACACATTTTGGCAAAGGAGAATGAGGTATGAGGAA
578 TGCATTCAATGACGTGAAGCATTAATGACAACACATTTTGGCAAAGGAGAATGAGGTATGAGGAA
37156797 AGCGACTTTC
643 AGCGACTTTC
37156807 CTTACCGTAA
Statistics
Matches: 580, Mismatches: 64, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
655 3 0.01
656 459 0.79
657 117 0.20
658 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (656 bp):
TACTTATTCATTGTATTATGATGATCGAAACATGTTTTAAGAGTGTTTAATTAAAAATTACTTAT
TTAAGCATGTTCTAAATTGGTGTAAAGATTGGTTGGTGATAAGTTGGTTGATCGATAAGGAAAGT
CATATTGGTGGCTAATGTGACGTTCAAAATTCGGGCTGAACCATCCCAATCGAGTTTGGGCACCA
CATTTCTCCTTCCAAAATCCACCAAACATTGGATAAAATCTATCTCCTATTGTTGCAATAACTTT
CTTTTCAAATTTGTTTTATTTTAACTCATTCTAATTGTTTGTTTTTTTATTTTCAAATTCAGATT
TTAAACATTTTCAGCAACTTGAAATCAATCCTCCACTGCTCTTTCTCAATTTCACTAATTTGCTA
AAGAATATTTCTAACTTAGTTTGGTTGATCGATACACCAAAGAAGTGGAAATAGGTCTTAAGAAC
TTATTTCAACAATCGAGGTGATGGAATTGAGACCTTGAAGAAGAAATAAGAAACATCAACAAATT
CTAGGTGATTTAGGGATGGGAAGTTACAATGTAAACGAATGCCTGGGAATTTTGAATTGCATTCA
ATGACGTGAAGCATTAATGACAACACATTTTGGCAAAGGAGAATGAGGTATGAGGAAAGCGACTT
TCTTTA
Found at i:37157321 original size:6 final size:6
Alignment explanation
Indices: 37157312--37157359 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
37157302 ATTTATCTTG
**
37157312 TTAAAT TTAAAT TT-GCT TTAAAT TTAAAT TTAAA- TTAGAAT TTAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTA-AAT TTAAAT
37157359 T
1 T
37157360 GATATTAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 6 0.17
6 26 0.74
7 3 0.09
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (6 bp):
TTAAAT
Found at i:37159171 original size:30 final size:30
Alignment explanation
Indices: 37159116--37159262 Score: 117
Period size: 30 Copynumber: 5.0 Consensus size: 30
37159106 TCTTGGAGGT
* *
37159116 CCCTAAACTATCTAGAAATTCCATTTTTGAC
1 CCCTAAACT-TCTAAAAATTTCATTTTTGAC
37159147 CCCTAAACTTCTAAAAATTTCATTTTT-AC
1 CCCTAAACTTCTAAAAATTTCATTTTTGAC
* * *
37159176 ACCC-GAACTTCCAAAAATTCCATTTTTGAC
1 -CCCTAAACTTCTAAAAATTTCATTTTTGAC
* * *
37159206 CCTTAAACTTCCT-TAAA-TT-ATATTT-AC
1 CCCTAAACTT-CTAAAAATTTCATTTTTGAC
** * *
37159233 CCCCGAACTTTTAAAAATTTTATTTTTGAC
1 CCCTAAACTTCTAAAAATTTCATTTTTGAC
37159263 TCGAAACTTT
Statistics
Matches: 91, Mismatches: 17, Indels: 17
0.73 0.14 0.14
Matches are distributed among these distances:
26 1 0.01
27 12 0.13
28 7 0.08
29 30 0.33
30 31 0.34
31 10 0.11
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (30 bp):
CCCTAAACTTCTAAAAATTTCATTTTTGAC
Found at i:37159185 original size:29 final size:30
Alignment explanation
Indices: 37159116--37159216 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
37159106 TCTTGGAGGT
*
37159116 CCCTAAACTATCTAGAAATTCCATTTTTGAC
1 CCCTAAACT-TCTAAAAATTCCATTTTTGAC
*
37159147 CCCTAAACTTCTAAAAATTTCATTTTT-AC
1 CCCTAAACTTCTAAAAATTCCATTTTTGAC
* *
37159176 ACCC-GAACTTCCAAAAATTCCATTTTTGAC
1 -CCCTAAACTTCTAAAAATTCCATTTTTGAC
*
37159206 CCTTAAACTTC
1 CCCTAAACTTC
37159217 CTTAAATTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
29 24 0.40
30 27 0.45
31 9 0.15
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.36
Consensus pattern (30 bp):
CCCTAAACTTCTAAAAATTCCATTTTTGAC
Found at i:37159224 original size:59 final size:57
Alignment explanation
Indices: 37159131--37159262 Score: 158
Period size: 57 Copynumber: 2.3 Consensus size: 57
37159121 AACTATCTAG
*
37159131 AAATTCCATTTTTGACCCCTAAACTTCTAAAAATTTCATTTTTACACCCGAACTTCCAA
1 AAATTCCATTTTTGACCCCTAAACTTCTAAAAA-TT-ATATTTACACCCGAACTTCCAA
* * * **
37159190 AAATTCCATTTTTGACCCTTAAACTTCCT-TAAATTATATTTACCCCCGAACTTTTAA
1 AAATTCCATTTTTGACCCCTAAACTT-CTAAAAATTATATTTACACCCGAACTTCCAA
**
37159247 AAATTTTATTTTTGAC
1 AAATTCCATTTTTGAC
37159263 TCGAAACTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
57 32 0.50
58 2 0.03
59 28 0.44
60 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (57 bp):
AAATTCCATTTTTGACCCCTAAACTTCTAAAAATTATATTTACACCCGAACTTCCAA
Found at i:37159308 original size:58 final size:58
Alignment explanation
Indices: 37159245--37159404 Score: 155
Period size: 58 Copynumber: 2.8 Consensus size: 58
37159235 CCGAACTTTT
37159245 AAAAATTTTATTTTTGACTCGAAACTTTCAAAAATTACCATTTTACCCCCGGATATCC
1 AAAAATTTTATTTTTGACTCGAAACTTTCAAAAATTACCATTTTACCCCCGGATATCC
* ** * * * *
37159303 AAAAATTTTGTTTTTGA-TCCG-ATTTTTCTAAAAATTACCGTTTTACCCCTGGATGTTC
1 AAAAATTTTATTTTTGACT-CGAAACTTTC-AAAAATTACCATTTTACCCCCGGATATCC
* * * * * *
37159361 -AAAATATCATTTTTAACCCTAAACTTTCCCAAAATTACCATTTT
1 AAAAATTTTATTTTTGACTCGAAACTTT-CAAAAATTACCATTTT
37159405 GCCCTCGAGA
Statistics
Matches: 80, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
57 19 0.24
58 60 0.75
59 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.40
Consensus pattern (58 bp):
AAAAATTTTATTTTTGACTCGAAACTTTCAAAAATTACCATTTTACCCCCGGATATCC
Found at i:37162126 original size:46 final size:46
Alignment explanation
Indices: 37161996--37162133 Score: 152
Period size: 46 Copynumber: 3.0 Consensus size: 46
37161986 TAACTGACTA
* * *
37161996 GTGAATTCAAATTTAGGTTCCCAGCTCTTACATATGTTACAGATTG
1 GTGAATACAAATTTAGGTTCCCAGCTCTTGCATATGTTGCAGATTG
* ** * * *
37162042 GTTAATACGGATTCAGGTTCGCAGCTCTTGTATATGTTGCAGATTG
1 GTGAATACAAATTTAGGTTCCCAGCTCTTGCATATGTTGCAGATTG
* * *
37162088 GTGAATACAAATTTAGGTTCCCA-ATCATTGCATTTGTTGTAGATTG
1 GTGAATACAAATTTAGGTTCCCAGCTC-TTGCATATGTTGCAGATTG
37162134 AGAATAGGGA
Statistics
Matches: 73, Mismatches: 18, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
45 2 0.03
46 71 0.97
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (46 bp):
GTGAATACAAATTTAGGTTCCCAGCTCTTGCATATGTTGCAGATTG
Found at i:37163403 original size:11 final size:11
Alignment explanation
Indices: 37163387--37163411 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37163377 TAAACACCCA
37163387 TTCTTTCTCCC
1 TTCTTTCTCCC
37163398 TTCTTTCTCCC
1 TTCTTTCTCCC
37163409 TTC
1 TTC
37163412 CCCTCTCACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (11 bp):
TTCTTTCTCCC
Found at i:37166189 original size:15 final size:16
Alignment explanation
Indices: 37166157--37166190 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
37166147 TTTTTACAGA
37166157 AGTCAACAACATATTAC
1 AGTCAACAACA-ATTAC
37166174 AGTCAACAAC-ATTAC
1 AGTCAACAACAATTAC
37166189 AG
1 AG
37166191 AAGTCATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
17 10 0.59
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.21
Consensus pattern (16 bp):
AGTCAACAACAATTAC
Found at i:37166666 original size:173 final size:175
Alignment explanation
Indices: 37166376--37166713 Score: 536
Period size: 173 Copynumber: 1.9 Consensus size: 175
37166366 GTCATCAACC
*
37166376 ATATAATATCAACATATTCCAACATTTTCAGGAAATACAAATGAACTGATGACTTACCTTTGATG
1 ATATAATATCAACATATTCCAACATTTTCAAGAAATACAAATGAACTGATGACTTACCTTTGATG
* **
37166441 ATTCAACAATGGATTAATCCAGAAAACGAACCATCAACCGAACCTACAAAC-AAAAAA-CATAGG
66 ATTCAACAATAGATTAATCCAGAAAACGAACCATCAACCGAACCTACAAACAAAAAAAGCATACA
*
37166504 GTTAGAAATAATCTAATATACTCACATTCTACCCTTTAGACCACA
131 GTTAGAAATAATCAAATATACTCACATTCTACCCTTTAGACCACA
* *
37166549 ATATAATATCAACATATTCCAACATTTTCAAGACATACAAATTAACTGATGACTTACCTTTGATG
1 ATATAATATCAACATATTCCAACATTTTCAAGAAATACAAATGAACTGATGACTTACCTTTGATG
* * * * *
37166614 ATTCAACAATAGATTACTCCAGAAAATGAACCGTCAATCGAACCTGCAAACAAAAAAAAGCATAC
66 ATTCAACAATAGATTAATCCAGAAAACGAACCATCAACCGAACCTACAAAC-AAAAAAAGCATAC
*
37166679 AGTTAGAAATAATCAAATATACTCACATTGTACCC
130 AGTTAGAAATAATCAAATATACTCACATTCTACCC
37166714 CTACCCACTT
Statistics
Matches: 149, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
173 107 0.72
175 6 0.04
176 36 0.24
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (175 bp):
ATATAATATCAACATATTCCAACATTTTCAAGAAATACAAATGAACTGATGACTTACCTTTGATG
ATTCAACAATAGATTAATCCAGAAAACGAACCATCAACCGAACCTACAAACAAAAAAAGCATACA
GTTAGAAATAATCAAATATACTCACATTCTACCCTTTAGACCACA
Found at i:37170495 original size:70 final size:70
Alignment explanation
Indices: 37170412--37170552 Score: 212
Period size: 70 Copynumber: 2.0 Consensus size: 70
37170402 TGAATTTAAG
* * * * *
37170412 AGAAAGGATTGTATGAAATTATGATTGCACGTCATCCCTATATCTTTTC-AATAGGGGAATGACA
1 AGAAAGGATTGTATGAAACTAAGATTGCACGTCATCCCTAT-CCCTTTCAAATAAGGGAATGACA
37170476 AATCAA
65 AATCAA
*
37170482 AGAAAGGATTGTATGAAACTAAGATTTCACGTCATCCCTATCCCTTTCAAATAAGGGAATGACAA
1 AGAAAGGATTGTATGAAACTAAGATTGCACGTCATCCCTATCCCTTTCAAATAAGGGAATGACAA
37170547 ATCAA
66 ATCAA
37170552 A
1 A
37170553 TTTTTCCTCC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 5 0.08
70 59 0.92
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (70 bp):
AGAAAGGATTGTATGAAACTAAGATTGCACGTCATCCCTATCCCTTTCAAATAAGGGAATGACAA
ATCAA
Found at i:37191638 original size:41 final size:40
Alignment explanation
Indices: 37191572--37191667 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 40
37191562 AATTTCTTGA
* * *
37191572 TGTTTAAAAGGAAGACTCATTACTCGGGATA-AGAATGAGAT
1 TGTTAAAAAGGAAGACTCATGACTC--GATAGAGAATAAGAT
* * *
37191613 TGTTAAAAATGAAGACTTATGACTCGATAGAGCATAAGAT
1 TGTTAAAAAGGAAGACTCATGACTCGATAGAGAATAAGAT
37191653 TGTT-AAAAGGAAGAC
1 TGTTAAAAAGGAAGAC
37191668 ACATTAATCT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 14 0.30
40 12 0.26
41 21 0.45
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (40 bp):
TGTTAAAAAGGAAGACTCATGACTCGATAGAGAATAAGAT
Found at i:37192286 original size:21 final size:24
Alignment explanation
Indices: 37192242--37192296 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 24
37192232 TGCATAATAG
*
37192242 GTATCGGTAGTTCTGTGTATGCTT
1 GTATCGGTAGTTCAGTGTATGCTT
37192266 GTATCGGTAGTT-AG-G-ATGCTT
1 GTATCGGTAGTTCAGTGTATGCTT
37192287 GTATCGGTAG
1 GTATCGGTAG
37192297 AAGTTGCAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 16 0.53
22 1 0.03
23 1 0.03
24 12 0.40
ACGTcount: A:0.16, C:0.11, G:0.33, T:0.40
Consensus pattern (24 bp):
GTATCGGTAGTTCAGTGTATGCTT
Found at i:37198375 original size:2 final size:2
Alignment explanation
Indices: 37198368--37198393 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37198358 GCGACTGATA
37198368 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
37198394 GTATGTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37199593 original size:13 final size:13
Alignment explanation
Indices: 37199575--37199603 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37199565 CTTGTTAGAT
37199575 TTTTTAATTATTC
1 TTTTTAATTATTC
37199588 TTTTTAATTATTC
1 TTTTTAATTATTC
37199601 TTT
1 TTT
37199604 GGGTGAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTAATTATTC
Found at i:37199650 original size:3 final size:3
Alignment explanation
Indices: 37199642--37199679 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
37199632 AAGGGAGAGG
37199642 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37199680 ATCTTAAGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37202264 original size:17 final size:17
Alignment explanation
Indices: 37202232--37202274 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
37202222 AGGAAAAAAT
*
37202232 AGTTACAAGAATATGAAA
1 AGTTA-AAGAAGATGAAA
37202250 AGTTAAAGAAGATGAAA
1 AGTTAAAGAAGATGAAA
*
37202267 GGTTAAAG
1 AGTTAAAG
37202275 GTCAAGGGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.53, C:0.02, G:0.23, T:0.21
Consensus pattern (17 bp):
AGTTAAAGAAGATGAAA
Found at i:37205069 original size:21 final size:21
Alignment explanation
Indices: 37205045--37205086 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
37205035 AAATGTCACC
*
37205045 AAATAAATT-TTTTTTTTTTAA
1 AAAT-AATTATTTTATTTTTAA
*
37205066 AAATGATTATTTTATTTTTAA
1 AAATAATTATTTTATTTTTAA
37205087 TCATGTCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
AAATAATTATTTTATTTTTAA
Found at i:37207190 original size:14 final size:14
Alignment explanation
Indices: 37207171--37207199 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37207161 TTGTCCTGCA
37207171 GAGTAATAGCAAGG
1 GAGTAATAGCAAGG
37207185 GAGTAATAGCAAGG
1 GAGTAATAGCAAGG
37207199 G
1 G
37207200 GCACACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.38, T:0.14
Consensus pattern (14 bp):
GAGTAATAGCAAGG
Found at i:37216185 original size:24 final size:24
Alignment explanation
Indices: 37216158--37216214 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
37216148 AGAAAGATTG
*
37216158 GAACAGTTGCAAAAAGAGATGCAA
1 GAACAGTTGCAAAAACAGATGCAA
* * *
37216182 GAACAGATGCAAACACAGCTGCAA
1 GAACAGTTGCAAAAACAGATGCAA
*
37216206 GACCAGTTG
1 GAACAGTTG
37216215 GCAAGGGTCC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.12
Consensus pattern (24 bp):
GAACAGTTGCAAAAACAGATGCAA
Found at i:37230327 original size:13 final size:13
Alignment explanation
Indices: 37230309--37230343 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
37230299 GTGAAGGACA
*
37230309 TTAATCTAAAGTT
1 TTAATCTAAACTT
37230322 TTAATCTAAACTT
1 TTAATCTAAACTT
37230335 TTAATCTAA
1 TTAATCTAA
37230344 TTTAAAGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.46
Consensus pattern (13 bp):
TTAATCTAAACTT
Found at i:37234974 original size:18 final size:18
Alignment explanation
Indices: 37234931--37234974 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
37234921 AATTTGAATT
*
37234931 TAATTAAAAATGAGCGTG
1 TAATTAAAAATGAACGTG
* *
37234949 TAAATTAAATATGAATGTG
1 T-AATTAAAAATGAACGTG
37234968 TAATTAA
1 TAATTAA
37234975 TGGCAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (18 bp):
TAATTAAAAATGAACGTG
Found at i:37235287 original size:30 final size:30
Alignment explanation
Indices: 37235227--37235482 Score: 134
Period size: 30 Copynumber: 8.6 Consensus size: 30
37235217 AAAAATGAAA
* * *
37235227 TTTTAGAAAGTTT-TGGGACTAAATTCAAATT
1 TTTTAGAAAGTTTGAGGGTC-AAA-TCAAAAT
37235258 TTTTAG-AAGTTTGAGGGTCAAATCAAAA-
1 TTTTAGAAAGTTTGAGGGTCAAATCAAAAT
* * **
37235286 TTTTGGGAAGTTTG-GAGGTCAAATTTAAAT
1 TTTTAGAAAGTTTGAG-GGTCAAATCAAAAT
* * * *
37235316 TTTTGGAAAGTTCG-GGGATTAAAT-ATAAT
1 TTTTAGAAAGTTTGAGGG-TCAAATCAAAAT
* * * *
37235345 TTTTAGAAACTTCGGGGGTCAAATCCAAAT
1 TTTTAGAAAGTTTGAGGGTCAAATCAAAAT
* *
37235375 TTTT-GAAAAG-TTCAGGGATCAAAT-ATAAT
1 TTTTAG-AAAGTTTGAGGG-TCAAATCAAAAT
* * * * * *
37235404 TTTTGGAAACTTCGAGGGTTAAATCTAATT
1 TTTTAGAAAGTTTGAGGGTCAAATCAAAAT
* * * *
37235434 TTTTGGAAAGTTTGAGAGTCAAAACATAAT
1 TTTTAGAAAGTTTGAGGGTCAAATCAAAAT
* *
37235464 TTTTAGATAGTTTGGGGGT
1 TTTTAGAAAGTTTGAGGGT
37235483 TAAAATGTAA
Statistics
Matches: 172, Mismatches: 41, Indels: 25
0.72 0.17 0.11
Matches are distributed among these distances:
28 6 0.03
29 65 0.38
30 91 0.53
31 10 0.06
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (30 bp):
TTTTAGAAAGTTTGAGGGTCAAATCAAAAT
Found at i:37235456 original size:59 final size:60
Alignment explanation
Indices: 37235264--37235467 Score: 202
Period size: 59 Copynumber: 3.5 Consensus size: 60
37235254 AATTTTTTAG
* * ** * *
37235264 AAGTTTGAGGG-TCAAATCAAAATTTTGGGAAGTTTGGA-GGTCAAATTTAAATTTTTGGA
1 AAGTTTGAGGGATCAAAT-ATAATTTTTGGAAACTTCGAGGGTCAAATCTAAATTTTTGGA
* * * * * *
37235323 AAGTTCG-GGGATTAAATATAATTTTTAGAAACTTCGGGGGTCAAATCCAAATTTTTGAA
1 AAGTTTGAGGGATCAAATATAATTTTTGGAAACTTCGAGGGTCAAATCTAAATTTTTGGA
* * *
37235382 AAG-TTCAGGGATCAAATATAATTTTTGGAAACTTCGAGGGTTAAATCTAATTTTTTGGA
1 AAGTTTGAGGGATCAAATATAATTTTTGGAAACTTCGAGGGTCAAATCTAAATTTTTGGA
* *
37235441 AAGTTTGAGAG-TCAAAACATAATTTTT
1 AAGTTTGAGGGATC-AAATATAATTTTT
37235468 AGATAGTTTG
Statistics
Matches: 116, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
58 17 0.15
59 82 0.71
60 17 0.15
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (60 bp):
AAGTTTGAGGGATCAAATATAATTTTTGGAAACTTCGAGGGTCAAATCTAAATTTTTGGA
Found at i:37237401 original size:47 final size:48
Alignment explanation
Indices: 37237308--37237421 Score: 158
Period size: 47 Copynumber: 2.4 Consensus size: 48
37237298 GATTTGGTCT
**
37237308 ACTTCTCTATATCTCATCAGGAAGGTGACCACTTCATTTTTTTGATCC
1 ACTTCTCTATATCTCATCAGGAAGGTGACCACTTCATTGCTTTGATCC
* ***
37237356 ACTTCTCTGTATCTCATCAGGAA-GTGACTGTTTCATTGCTTTGATCC
1 ACTTCTCTATATCTCATCAGGAAGGTGACCACTTCATTGCTTTGATCC
*
37237403 ACTTTTCTATATCTCATCA
1 ACTTCTCTATATCTCATCA
37237422 AAAAGACAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 36 0.62
48 22 0.38
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41
Consensus pattern (48 bp):
ACTTCTCTATATCTCATCAGGAAGGTGACCACTTCATTGCTTTGATCC
Found at i:37237523 original size:50 final size:48
Alignment explanation
Indices: 37237462--37237555 Score: 125
Period size: 50 Copynumber: 1.9 Consensus size: 48
37237452 TTGAGCTTCA
* * * *
37237462 CTTCATTATTTTGGTTCACTTCTCTGTATCTCTCATCAAGAAGATGACTG
1 CTTCATCATTTTGATCCACTTCTC--TATATCTCATCAAGAAGATGACTG
*
37237512 CTTCATCATTTTGATCCACTTCTCTATATCTCATCAGGAAGATG
1 CTTCATCATTTTGATCCACTTCTCTATATCTCATCAAGAAGATG
37237556 GGGATTTGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 18 0.46
50 21 0.54
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (48 bp):
CTTCATCATTTTGATCCACTTCTCTATATCTCATCAAGAAGATGACTG
Found at i:37237535 original size:173 final size:170
Alignment explanation
Indices: 37237238--37237552 Score: 409
Period size: 173 Copynumber: 1.8 Consensus size: 170
37237228 GGTCCTCTTC
** * * * * ** *
37237238 TCTATATCTCATCATGAAGATGGGGTTTGAAGTTACACTCGTATTGAGTTTTTCTTTATTGATTT
1 TCTATATCTCATCAAAAAGAAGGGATTTGAAGTTACACTCATATTGAGCTTCACTTCATTGATTT
* * ** *
37237303 GGTCTACTTCTCTATATCTCATCAGGAAGGTGACCACTTCATTTTTTTGATCCACTTCTCTGTAT
66 GGTCTACTTCTCTATATCTCATCAAGAAGATGACCACTTCATCATTTTGATCCACTTCTCTATAT
37237368 CTCATCAGGAAGTGACTGTTTCATTGCTTTGATCCACTTT
131 CTCATCAGGAAGTGACTGTTTCATTGCTTTGATCCACTTT
*
37237408 TCTATATCTCATCAAAAAGACAGGGATTTGAAGTTTCACTCATATTGAGCTTCACTTCATT-ATT
1 TCTATATCTCATCAAAAAGA-AGGGATTTGAAGTTACACTCATATTGAGCTTCACTTCATTGA-T
* **
37237472 TTGGT-TCACTTCTCTGTATCTCTCATCAAGAAGATGACTGCTTCATCATTTTGATCCACTTCTC
64 TTGGTCT-ACTTCTC--TATATCTCATCAAGAAGATGACCACTTCATCATTTTGATCCACTTCTC
37237536 TATATCTCATCAGGAAG
126 TATATCTCATCAGGAAG
37237553 ATGGGGATTT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
170 20 0.16
171 45 0.37
173 57 0.47
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (170 bp):
TCTATATCTCATCAAAAAGAAGGGATTTGAAGTTACACTCATATTGAGCTTCACTTCATTGATTT
GGTCTACTTCTCTATATCTCATCAAGAAGATGACCACTTCATCATTTTGATCCACTTCTCTATAT
CTCATCAGGAAGTGACTGTTTCATTGCTTTGATCCACTTT
Found at i:37237656 original size:48 final size:48
Alignment explanation
Indices: 37237585--37237678 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
37237575 ACTTTGAGCT
* * *
37237585 TCGCTTCATTATTTTGGTTCACTTCTCTATATCTCATCAGGAAGATGG
1 TCGCTTCATCATTTTGATCCACTTCTCTATATCTCATCAGGAAGATGG
* * *
37237633 TCGCTTTATCATTTTGATCCACTTCTCTGTATCTCATTAGGAAGAT
1 TCGCTTCATCATTTTGATCCACTTCTCTATATCTCATCAGGAAGAT
37237679 AAGGGTTTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (48 bp):
TCGCTTCATCATTTTGATCCACTTCTCTATATCTCATCAGGAAGATGG
Found at i:37237691 original size:124 final size:123
Alignment explanation
Indices: 37237339--37238367 Score: 1099
Period size: 123 Copynumber: 8.4 Consensus size: 123
37237329 AAGGTGACCA
* * * * * **
37237339 CTTCATTTTTTTGATCCACTTCTCTGTATCTCATCAGGAAG-TGACTGTTTCATTGCTTTGATCC
1 CTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTATTTTGATCC
* * * * * *
37237403 ACTTTTCTATATCTCATCAAAAAGACAGGGATTTGAAGTTTCACTCATATTGAGCTTCA
66 ACTTCTCTGTATCTCATCAAGAAGATAGGG-TTTGAAGTTTCACTCACATTGAGCTTCG
* * * * *
37237462 CTTCATTATTTTGGTTCACTTCTCTGTATCTCTCATCAAGAAGATGACTGCTTCATCATTTTGAT
1 CTTCATTATTTTGGTCCACTTCTC--TATATCTCATCAGGAAGATGACCGCTTCATTATTTTGAT
* * * *
37237527 CCACTTCTCTATATCTCATCAGGAAGATGGGGATTTGAAGTTTCACTCACTTTGAGCTTCG
64 CCACTTCTCTGTATCTCATCAAGAAGATAGGG-TTTGAAGTTTCACTCACATTGAGCTTCG
* ** * *
37237588 CTTCATTATTTTGGTTCACTTCTCTATATCTCATCAGGAAGATGGTCGCTTTATCATTTTGATCC
1 CTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTATTTTGATCC
* * * *
37237653 ACTTCTCTGTATCTCATTAGGAAGATAAGGGTTTGAAGTTTCATTCACATTGAGCTTTG
66 ACTTCTCTGTATCTCATCAAGAAGAT-AGGGTTTGAAGTTTCACTCACATTGAGCTTCG
* * *
37237712 CTTCATTATTTTGGTCCACTTCTCTATATCTCATCA-G--G--GACTGCTTCATCATTTTGATCT
1 CTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTATTTTGATCC
* *
37237772 ACGTCTTTGTATCTCATC-AGAAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTCG
66 ACTTCTCTGTATCTCATCAAG-AAGATA-GGGTTTGAAGTTTCACTCACATTGAGCTTCG
* * * * *
37237831 CTTCATTATTTTGGTCCACTTCTC-AGTTTCTCATCAAGAAGTTGACCTCTTCATTATTTTGAAC
1 CTTCATTATTTTGGTCCACTTCTCTA-TATCTCATCAGGAAGATGACCGCTTCATTATTTTGATC
* * **
37237895 CACTT-TCCTGTATCTCATCAAGAAGATGGGGTTTGAAGTTTCACTCTCATTGAGCTTTT
65 CACTTCT-CTGTATCTCATCAAGAAGATAGGGTTTGAAGTTTCACTCACATTGAGCTTCG
* ** * * * *
37237954 CTTCATTTTTTTGGTTTACTTCTATGTATCTCATCAGGAAGATAACCACTTCATTATTTTGATCC
1 CTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTATTTTGATCC
* * *
37238019 ACTTTTCTGTATCTCATCAAGAAAATGAGGTTTTGAAGTTTCACTCACATTGAGCTTCG
66 ACTTCTCTGTATCTCATCAAGAAGAT-AGGGTTTGAAGTTTCACTCACATTGAGCTTCG
* * * * * * * *
37238078 CTTCATTATTTTGGTCCACTGCTCTGTATCTCTTCACGAAGATGATCGCTTCTTTGTTTTGACCC
1 CTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTATTTTGATCC
* * * * * *
37238143 ACTTCTTTGTATCTCATTAGGAAGATTGGGTTTGAAGTTTCACTCGCATTGAGCTTTG
66 ACTTCTCTGTATCTCATCAAGAAGATAGGGTTTGAAGTTTCACTCACATTGAGCTTCG
* * ** * * *
37238201 CTTCATTGTTTTTGTTTACTTCTCTATATCTCATCAGGAAGATGACCACGTCATTGTTTTGA-CA
1 CTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTATTTTGATC-
* * * *
37238265 CACTTCTCTGTATCT-ATCAAGAAGATAGCGTTTTGAAGTTTCTCTCACGTTGAACTTCG
65 CACTTCTCTGTATCTCATCAAGAAGATAG-GGTTTGAAGTTTCACTCACATTGAGCTTCG
* * * * **
37238324 CTTCATTATCTTGATCCACTTCTCTGTAACTCATTGGGAAGATG
1 CTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGAAGATG
37238368 GGATTTGAAG
Statistics
Matches: 762, Mismatches: 125, Indels: 38
0.82 0.14 0.04
Matches are distributed among these distances:
118 3 0.00
119 99 0.13
120 1 0.00
121 1 0.00
122 12 0.02
123 277 0.36
124 256 0.34
125 19 0.02
126 94 0.12
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (123 bp):
CTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTATTTTGATCC
ACTTCTCTGTATCTCATCAAGAAGATAGGGTTTGAAGTTTCACTCACATTGAGCTTCG
Found at i:37237785 original size:43 final size:43
Alignment explanation
Indices: 37237710--37237791 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
37237700 CATTGAGCTT
* * *
37237710 TGCTTCATTATTTTGGTCCACTTCTCTATATCTCATCAGGGAC
1 TGCTTCATCATTTTGATCCACGTCTCTATATCTCATCAGGGAC
* * *
37237753 TGCTTCATCATTTTGATCTACGTCTTTGTATCTCATCAG
1 TGCTTCATCATTTTGATCCACGTCTCTATATCTCATCAG
37237792 AAAGATAGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.44
Consensus pattern (43 bp):
TGCTTCATCATTTTGATCCACGTCTCTATATCTCATCAGGGAC
Found at i:37238087 original size:247 final size:246
Alignment explanation
Indices: 37237339--37238367 Score: 1114
Period size: 247 Copynumber: 4.2 Consensus size: 246
37237329 AAGGTGACCA
* * * * **
37237339 CTTCATTTTTTTGATCCACTTCTCTGTATCTCATCAGGAAG-TGA-CTGTTTCATTGCTTTGATC
1 CTTCATTATTTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGATC-GCTTCATTATTTTGATC
* * * * * **
37237402 CACTTTTCTATATCTCATCAAAAAGACAGGGATTTGAAGTTTCACTCAT-ATTGAGCTTCACTTC
65 CACTTCTCTGTATCTCATCAAGAAGA-TGGGGTTTGAAGTTTCACTC-TCATTGAGCTTTGCTTC
* * **
37237466 ATTATTTTGGTTCACTTCTCTGTATCTCTCATCAAGAAGATGACTGCTTCATCATTTTGATCCAC
128 ATTATTTTGGTTCACTTCTC--TATATCTCATCAGGAAGATGACCACTTCATCATTTTGATCCAC
* * * * * *
37237531 TTCTCTATATCTCATCAGGAAGATGGGGATTTGAAGTTTCACTCACTTTGAGCTTCG
191 TTCTCTGTATCTCATCAAGAAAAT-AGGTTTTGAAGTTTCACTCACATTGAGCTTCG
* * * *
37237588 CTTCATTATTTTGGTTCACTTCTCTA-TATCTCATCAGGAAGATGGTCGCTTTATCATTTTGATC
1 CTTCATTATTTTGGTCCACTTCTC-AGTATCTCATCAGGAAGATGATCGCTTCATTATTTTGATC
* * * * *
37237652 CACTTCTCTGTATCTCATTAGGAAGATAAGGGTTTGAAGTTTCATTCACATTGAGCTTTGCTTCA
65 CACTTCTCTGTATCTCATCAAGAAGAT-GGGGTTTGAAGTTTCACTCTCATTGAGCTTTGCTTCA
* * *
37237717 TTATTTTGGTCCACTTCTCTATATCTCATCAGG--GACTG----CTTCATCATTTTGATCTACGT
129 TTATTTTGGTTCACTTCTCTATATCTCATCAGGAAGA-TGACCACTTCATCATTTTGATCCACTT
* *
37237776 CTTTGTATCTCATC-AGAAAGATAGGGGTTTGAAGTTTCACTCACATTGAGCTTCG
193 CTCTGTATCTCATCAAGAAA-ATA-GGTTTTGAAGTTTCACTCACATTGAGCTTCG
* * * * * *
37237831 CTTCATTATTTTGGTCCACTTCTCAGTTTCTCATCAAGAAGTTGACCTCTTCATTATTTTGAACC
1 CTTCATTATTTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGATCGCTTCATTATTTTGATCC
*
37237896 ACTT-TCCTGTATCTCATCAAGAAGATGGGGTTTGAAGTTTCACTCTCATTGAGCTTTTCTTCAT
66 ACTTCT-CTGTATCTCATCAAGAAGATGGGGTTTGAAGTTTCACTCTCATTGAGCTTTGCTTCAT
* * * * * * *
37237960 TTTTTTGGTTTACTTCTATGTATCTCATCAGGAAGATAACCACTTCATTATTTTGATCCACTTTT
130 TATTTTGGTTCACTTCTCTATATCTCATCAGGAAGATGACCACTTCATCATTTTGATCCACTTCT
37238025 CTGTATCTCATCAAGAAAATGAGGTTTTGAAGTTTCACTCACATTGAGCTTCG
195 CTGTATCTCATCAAGAAAAT-AGGTTTTGAAGTTTCACTCACATTGAGCTTCG
* * * * * * *
37238078 CTTCATTATTTTGGTCCACTGCTCTGTATCTCTTCACGAAGATGATCGCTTCTTTGTTTTGACCC
1 CTTCATTATTTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGATCGCTTCATTATTTTGATCC
* * * * *
37238143 ACTTCTTTGTATCTCATTAGGAAGATTGGGTTTGAAGTTTCACTCGCATTGAGCTTTGCTTCATT
66 ACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTTTCACTCTCATTGAGCTTTGCTTCATT
* * * * **
37238208 GTTTTTGTTTACTTCTCTATATCTCATCAGGAAGATGACCACGTCATTGTTTTGA-CACACTTCT
131 ATTTTGGTTCACTTCTCTATATCTCATCAGGAAGATGACCACTTCATCATTTTGATC-CACTTCT
* * * *
37238272 CTGTATCT-ATCAAGAAGATAGCGTTTTGAAGTTTCTCTCACGTTGAACTTCG
195 CTGTATCTCATCAAGAAAATAG-GTTTTGAAGTTTCACTCACATTGAGCTTCG
* * * * **
37238324 CTTCATTATCTTGATCCACTTCTCTGTAACTCATTGGGAAGATG
1 CTTCATTATTTTGGTCCACTTCTCAGTATCTCATCAGGAAGATG
37238368 GGATTTGAAG
Statistics
Matches: 660, Mismatches: 99, Indels: 45
0.82 0.12 0.06
Matches are distributed among these distances:
242 66 0.10
243 138 0.21
244 2 0.00
245 2 0.00
246 76 0.12
247 237 0.36
248 19 0.03
249 36 0.05
250 83 0.13
251 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (246 bp):
CTTCATTATTTTGGTCCACTTCTCAGTATCTCATCAGGAAGATGATCGCTTCATTATTTTGATCC
ACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTTTCACTCTCATTGAGCTTTGCTTCATT
ATTTTGGTTCACTTCTCTATATCTCATCAGGAAGATGACCACTTCATCATTTTGATCCACTTCTC
TGTATCTCATCAAGAAAATAGGTTTTGAAGTTTCACTCACATTGAGCTTCG
Found at i:37238511 original size:46 final size:46
Alignment explanation
Indices: 37238441--37238618 Score: 197
Period size: 46 Copynumber: 4.0 Consensus size: 46
37238431 AGATAATAGT
* *
37238441 TTCAATCTGCCCCTCTTAACTTAGGGGTAAAAGATTGGATGATGGC
1 TTCAATCTGCCCCTATTGACTTAGGGGTAAAAGATTGGATGATGGC
* * * *
37238487 TTCAATTTGTCTCTATTGACTTAGGGGCAAAAGATTGGATGATGGC
1 TTCAATCTGCCCCTATTGACTTAGGGGTAAAAGATTGGATGATGGC
* *
37238533 TTCAATCTGCCCCTCTTGA-TTAGGGGTAAAAGATTGGA--ATGAC
1 TTCAATCTGCCCCTATTGACTTAGGGGTAAAAGATTGGATGATGGC
* * *
37238576 TT-AAACTTGCCCCT-TTGGA-TTAAGGGTAAATGATTGGATGATG
1 TTCAATC-TGCCCCTATT-GACTTAGGGGTAAAAGATTGGATGATG
37238619 ATGTAACTTT
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
42 5 0.04
43 32 0.28
45 21 0.19
46 55 0.49
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (46 bp):
TTCAATCTGCCCCTATTGACTTAGGGGTAAAAGATTGGATGATGGC
Found at i:37239085 original size:98 final size:98
Alignment explanation
Indices: 37238863--37239103 Score: 297
Period size: 98 Copynumber: 2.5 Consensus size: 98
37238853 CAATCTACTT
* * * ** * *
37238863 CTCTACATCTTCAAGGTATAAGATTCACCGTTGCGATTTCAATCTTTCCCTTCACATCTCTAGGG
1 CTCTTCATCTTTAAGGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCACTAAGG
** *
37238928 TATAAGGTTCACCGTTGTGGCTTCCACCTTTCC
66 TATAAGGTTCACCGTTGCAGCTTCAACCTTTCC
*
37238961 CTCTTCATCTTTAAGGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCTTCACATCACTAAGG
1 CTCTTCATCTTTAAGGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCACTAAGG
***
37239026 TATAAGGTTTGTCGTTGCAGCTTCAACCTTTCC
66 TATAAGGTTCACCGTTGCAGCTTCAACCTTTCC
* * *
37239059 C-C-TCAAATCTTTAAGGTATAAGATTCGCCATTGCAGCTTTAATCT
1 CTCTTC--ATCTTTAAGGTATAAGATTCGCCGTTGCGGCTTCAATCT
37239104 CTTCATTCAT
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
96 2 0.02
97 1 0.01
98 120 0.98
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (98 bp):
CTCTTCATCTTTAAGGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCACTAAGG
TATAAGGTTCACCGTTGCAGCTTCAACCTTTCC
Found at i:37239093 original size:49 final size:49
Alignment explanation
Indices: 37238867--37239154 Score: 260
Period size: 49 Copynumber: 5.9 Consensus size: 49
37238857 CTACTTCTCT
* * *
37238867 ACATCTTCAAGGTATAAGATTCACCGTTGC-GATTTCAATCTTTCCCTTC
1 ACATCTTTAAGGTATAAGATTCGCCGTTGCAG-CTTCAATCTTTCCCTTC
* * * * ** * *
37238916 ACATCTCTAGGGTATAAGGTTCACCGTTGTGGCTTCCACCTTTCCC-TC
1 ACATCTTTAAGGTATAAGATTCGCCGTTGCAGCTTCAATCTTTCCCTTC
* * *
37238964 TTCATCTTTAAGGTATAAGATTCGTCGTTGCGGCTTCAATCTTTCCCTTC
1 -ACATCTTTAAGGTATAAGATTCGCCGTTGCAGCTTCAATCTTTCCCTTC
** * * * * *
37239014 ACATCACTAAGGTATAAGGTTTGTCGTTGCAGCTTCAACCTTTCCCCTC
1 ACATCTTTAAGGTATAAGATTCGCCGTTGCAGCTTCAATCTTTCCCTTC
* * * *
37239063 AAATCTTTAAGGTATAAGATTCGCCATTGCAGCTTTAATCTCTT-CATTC
1 ACATCTTTAAGGTATAAGATTCGCCGTTGCAGCTTCAATCT-TTCCCTTC
* * *
37239112 ATAT-TCTTATGGTACAAGATTCGCCGTTGCAGCTTCAATCTTT
1 ACATCT-TTAAGGTATAAGATTCGCCGTTGCAGCTTCAATCTTT
37239155 ACCATCTCGT
Statistics
Matches: 193, Mismatches: 41, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
48 5 0.03
49 183 0.95
50 5 0.03
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.37
Consensus pattern (49 bp):
ACATCTTTAAGGTATAAGATTCGCCGTTGCAGCTTCAATCTTTCCCTTC
Found at i:37240013 original size:33 final size:32
Alignment explanation
Indices: 37239976--37240044 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 32
37239966 CCTTTACGAG
37239976 TTTTC-GTCTTGACCTTTCCTTTTTCTTCTTCTT
1 TTTTCTGTCTTG-CCTTTCCTTTTTCTT-TTCTT
* * **
37240009 TTTTCTTTTTTGTGTTTCCTTTTTCTTTTCTT
1 TTTTCTGTCTTGCCTTTCCTTTTTCTTTTCTT
37240041 TTTT
1 TTTT
37240045 TCTCTCTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
32 9 0.29
33 18 0.58
34 4 0.13
ACGTcount: A:0.01, C:0.20, G:0.06, T:0.72
Consensus pattern (32 bp):
TTTTCTGTCTTGCCTTTCCTTTTTCTTTTCTT
Found at i:37240019 original size:20 final size:20
Alignment explanation
Indices: 37239990--37240037 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
37239980 CGTCTTGACC
* *
37239990 TTTCCTTTTTCT-TCTTCTTT
1 TTTCTTTTTTCTGT-TTCCTT
*
37240010 TTTCTTTTTTGTGTTTCCTT
1 TTTCTTTTTTCTGTTTCCTT
37240030 TTTCTTTT
1 TTTCTTTT
37240038 CTTTTTTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.00, C:0.19, G:0.04, T:0.77
Consensus pattern (20 bp):
TTTCTTTTTTCTGTTTCCTT
Found at i:37240930 original size:6 final size:6
Alignment explanation
Indices: 37240919--37240945 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37240909 CTTTCTTTTC
37240919 TTTGTT TTTGTT TTTGTT TTTGTT TTT
1 TTTGTT TTTGTT TTTGTT TTTGTT TTT
37240946 CTTGAGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTGTT
Found at i:37241014 original size:10 final size:11
Alignment explanation
Indices: 37240990--37241024 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
37240980 TATCATCTCG
37240990 TCCTTTTTCTTT
1 TCCTTTTT-TTT
*
37241002 TTCTTTTTTTT
1 TCCTTTTTTTT
37241013 TCCTTTTTTTT
1 TCCTTTTTTTT
37241024 T
1 T
37241025 GACCTCATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TCCTTTTTTTT
Found at i:37245014 original size:15 final size:15
Alignment explanation
Indices: 37244973--37245014 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
37244963 CATGAATAAT
*
37244973 AAATACACAAAACAA
1 AAATAAACAAAACAA
*
37244988 ATATATAA-AAAACAA
1 AAATA-AACAAAACAA
37245003 AAATAAACAAAA
1 AAATAAACAAAA
37245015 TACGCAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 2 0.09
15 19 0.86
16 1 0.05
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (15 bp):
AAATAAACAAAACAA
Found at i:37245250 original size:29 final size:30
Alignment explanation
Indices: 37245210--37245427 Score: 139
Period size: 29 Copynumber: 7.4 Consensus size: 30
37245200 AAATTCAAAT
*
37245210 TTTTTGG-TAGTTCGAGGGTCAAATCTAAA
1 TTTTTGGAAAGTTCGAGGGTCAAATCTAAA
** * *
37245239 -TTTTGTG-AAGTTTAAGGGTC-AATTTGAA
1 TTTTTG-GAAAGTTCGAGGGTCAAATCTAAA
*
37245267 TTTTTGGAAAGTTTGAGGGTCAAATAC-AAA
1 TTTTTGGAAAGTTCGAGGGTCAAAT-CTAAA
* * * * *
37245297 TTTTAGG-AAGTT-TAGGGGTTAAATTTGAA
1 TTTTTGGAAAGTTCGA-GGGTCAAATCTAAA
* ** *
37245326 TTTTAGG-AAGTTTAAGGGTTAAATCTAAA
1 TTTTTGGAAAGTTCGAGGGTCAAATCTAAA
* * **
37245355 TTTTTGGAAACTTCGAGGATCAAATCCGAA
1 TTTTTGGAAAGTTCGAGGGTCAAATCTAAA
* *
37245385 TTTTTGGAAAGTTCGGGGGTCAAAAC-ATAA
1 TTTTTGGAAAGTTCGAGGGTCAAATCTA-AA
*
37245415 TTTTTGGATAGTT
1 TTTTTGGAAAGTT
37245428 TATGTGTTAA
Statistics
Matches: 149, Mismatches: 30, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
28 13 0.09
29 73 0.49
30 63 0.42
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (30 bp):
TTTTTGGAAAGTTCGAGGGTCAAATCTAAA
Found at i:37245287 original size:58 final size:58
Alignment explanation
Indices: 37245210--37245363 Score: 188
Period size: 58 Copynumber: 2.7 Consensus size: 58
37245200 AAATTCAAAT
* * *
37245210 TTTTTGGTAGTTCGAGGGTCAAATCTAAATTTT-GTGAAGTTTAAGGG-TCAATTTGAA
1 TTTTTGGAAGTTTGAGGGTCAAATCTAAATTTTAG-GAAGTTTAAGGGTTAAATTTGAA
*
37245267 TTTTTGGAAAGTTTGAGGGTCAAATAC-AAATTTTAGGAAGTTTAGGGGTTAAATTTGAA
1 TTTTTGG-AAGTTTGAGGGTCAAAT-CTAAATTTTAGGAAGTTTAAGGGTTAAATTTGAA
* * * *
37245326 TTTTAGGAAGTTTAAGGGTTAAATCTAAATTTTTGGAA
1 TTTTTGGAAGTTTGAGGGTCAAATCTAAATTTTAGGAA
37245364 ACTTCGAGGA
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
57 8 0.10
58 59 0.70
59 17 0.20
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.40
Consensus pattern (58 bp):
TTTTTGGAAGTTTGAGGGTCAAATCTAAATTTTAGGAAGTTTAAGGGTTAAATTTGAA
Found at i:37245387 original size:30 final size:30
Alignment explanation
Indices: 37245353--37245422 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
37245343 GTTAAATCTA
* *
37245353 AATTTTTGGAAACTTCGAGGATCAAATCCG
1 AATTTTTGGAAACTTCGAGGATCAAAACAG
* * * *
37245383 AATTTTTGGAAAGTTCGGGGGTCAAAACAT
1 AATTTTTGGAAACTTCGAGGATCAAAACAG
37245413 AATTTTTGGA
1 AATTTTTGGA
37245423 TAGTTTATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (30 bp):
AATTTTTGGAAACTTCGAGGATCAAAACAG
Done.