Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 116 of 182
Found at i:37583524 original size:24 final size:24
Alignment explanation
Indices: 37583497--37583551 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
37583487 ACAAGCCATT
37583497 CATTTTATATTACAG-TTGCACTAA
1 CATTTTATATTAC-GTTTGCACTAA
* *
37583521 CATTTTGTATTACGTTTGCACTGA
1 CATTTTATATTACGTTTGCACTAA
37583545 CAATTTT
1 C-ATTTT
37583552 TACTCTTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 1 0.04
24 21 0.78
25 5 0.19
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.45
Consensus pattern (24 bp):
CATTTTATATTACGTTTGCACTAA
Found at i:37591099 original size:15 final size:15
Alignment explanation
Indices: 37591062--37591104 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
37591052 ACGAAAAAGC
*
37591062 AAAAGAAGAAGGACA
1 AAAAGAAGAAGAACA
** *
37591077 AAGGGAAGAAGAAGA
1 AAAAGAAGAAGAACA
37591092 AAAAGAAGAAGAA
1 AAAAGAAGAAGAA
37591105 ATTAACTCGA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.67, C:0.02, G:0.30, T:0.00
Consensus pattern (15 bp):
AAAAGAAGAAGAACA
Found at i:37593731 original size:24 final size:24
Alignment explanation
Indices: 37593704--37593758 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
37593694 ACAATCCATT
37593704 CATTTTATATTACAG-TTGCACTGA
1 CATTTTATATTA-AGTTTGCACTGA
* *
37593728 CATTTTGTATTATGTTTGCACTGA
1 CATTTTATATTAAGTTTGCACTGA
37593752 CAATTTT
1 C-ATTTT
37593759 TACTCTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 1 0.04
24 21 0.78
25 5 0.19
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.47
Consensus pattern (24 bp):
CATTTTATATTAAGTTTGCACTGA
Found at i:37599278 original size:16 final size:16
Alignment explanation
Indices: 37599257--37599287 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37599247 ATAATGTAAA
37599257 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
37599273 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
37599288 GGATCCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:37600295 original size:37 final size:37
Alignment explanation
Indices: 37600245--37600328 Score: 114
Period size: 37 Copynumber: 2.3 Consensus size: 37
37600235 AAAATATTCC
* * * *
37600245 TGCAACGACAGTTTTGGGTGCAATCTGGAAGTGCTCA
1 TGCAGCGATAGTTTTGGGTGCAATCTAGAAGTGATCA
*
37600282 TGCAGCGATAGTTTTGGGTGCAATCTAGAAGTGATTA
1 TGCAGCGATAGTTTTGGGTGCAATCTAGAAGTGATCA
*
37600319 TGTAGCGATA
1 TGCAGCGATA
37600329 TTAGTAGTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (37 bp):
TGCAGCGATAGTTTTGGGTGCAATCTAGAAGTGATCA
Found at i:37601386 original size:17 final size:17
Alignment explanation
Indices: 37601366--37601398 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37601356 AAAATGTAGA
*
37601366 TGCAGTGATAATAAAAG
1 TGCAGTGACAATAAAAG
37601383 TGCAGTGACAATAAAA
1 TGCAGTGACAATAAAA
37601399 ATGTAGGGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.09, G:0.21, T:0.21
Consensus pattern (17 bp):
TGCAGTGACAATAAAAG
Found at i:37603710 original size:16 final size:16
Alignment explanation
Indices: 37603689--37603719 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37603679 ATAATGTGAA
37603689 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
37603705 AATAAAGTTAAAATG
1 AATAAAGATAAAATG
37603720 GGAACCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:37605945 original size:69 final size:69
Alignment explanation
Indices: 37605727--37605938 Score: 160
Period size: 69 Copynumber: 3.1 Consensus size: 69
37605717 CTCTATCATG
* * * * * **
37605727 TTAA-GGTTCACAAACGAAGAGCCGCAACCTCCAACACAGTTAACATA-AGCAAATTTCCCAACT
1 TTAATGGTTCACAAATGAAAAGTCGCAACCTCCAACACAATTAGCA-AGAGCAAAGATCCCAACT
* *
37605790 ATCAT
65 GTTAT
** *** * * *
37605795 ATTAA-GGTTCTTAGGCGAAGAGTCGCAACCTCCAACACAATTAGCGAGAGCAAAGATCCCAATT
1 -TTAATGGTTCACAAATGAAAAGTCGCAACCTCCAACACAATTAGCAAGAGCAAAGATCCCAACT
37605859 GTTAT
65 GTTAT
* * * * * * *
37605864 TTTATGGTTCACAAATGAAAAGTCGCATCCTTCAACACAGTTAGCAAGAGTAAAGCTCTCAACTG
1 TTAATGGTTCACAAATGAAAAGTCGCAACCTCCAACACAATTAGCAAGAGCAAAGATCCCAACTG
37605929 TTAT
66 TTAT
37605933 ATTAAT
1 -TTAAT
37605939 TTTCACATGC
Statistics
Matches: 111, Mismatches: 29, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
68 4 0.04
69 103 0.93
70 4 0.04
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.25
Consensus pattern (69 bp):
TTAATGGTTCACAAATGAAAAGTCGCAACCTCCAACACAATTAGCAAGAGCAAAGATCCCAACTG
TTAT
Found at i:37607137 original size:22 final size:22
Alignment explanation
Indices: 37607109--37607153 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
37607099 ACAAAAGAGA
37607109 TATCAGGCTTTAAGCCGGTGAT
1 TATCAGGCTTTAAGCCGGTGAT
* *
37607131 TATCAGGCTTTGAGTCGGTGAT
1 TATCAGGCTTTAAGCCGGTGAT
37607153 T
1 T
37607154 TTGAACTGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.36
Consensus pattern (22 bp):
TATCAGGCTTTAAGCCGGTGAT
Found at i:37613622 original size:56 final size:58
Alignment explanation
Indices: 37613488--37613632 Score: 170
Period size: 58 Copynumber: 2.5 Consensus size: 58
37613478 CTAGTGTATC
* * **
37613488 CACATCCCAACTGATTATCTTAAAAATTTTCACAAGTATATAAAATAGCTCCAGGATT
1 CACATCCCAACTAATTATCTTAGAAATTTTCACAAGTATATAAAATAGCTCCAAAATT
* * * *
37613546 CGCATCCCAGCTTATTATCTTAGAAATTTTCACAAGTATA-AAACA-A-CTCGAAAATT
1 CACATCCCAACTAATTATCTTAGAAATTTTCACAAGTATATAAA-ATAGCTCCAAAATT
* *
37613602 CACATCCTAACTAATAATCTTAGAAATTTTC
1 CACATCCCAACTAATTATCTTAGAAATTTTC
37613633 TCATCGCATT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
56 33 0.45
57 4 0.05
58 37 0.50
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (58 bp):
CACATCCCAACTAATTATCTTAGAAATTTTCACAAGTATATAAAATAGCTCCAAAATT
Found at i:37619033 original size:28 final size:28
Alignment explanation
Indices: 37618998--37619072 Score: 134
Period size: 28 Copynumber: 2.7 Consensus size: 28
37618988 TAGAAAAATG
37618998 CTTT-GAGCCAGAATACAGAATAACGCT
1 CTTTCGAGCCAGAATACAGAATAACGCT
*
37619025 CTTTCGAGCCAAAATACAGAATAACGCT
1 CTTTCGAGCCAGAATACAGAATAACGCT
37619053 CTTTCGAGCCAGAATACAGA
1 CTTTCGAGCCAGAATACAGA
37619073 TTATTTCTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
27 4 0.09
28 41 0.91
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.21
Consensus pattern (28 bp):
CTTTCGAGCCAGAATACAGAATAACGCT
Found at i:37624332 original size:21 final size:21
Alignment explanation
Indices: 37624288--37624332 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37624278 AGTGCAGACC
* *
37624288 TCTACCGATAAAAGTGACAGT
1 TCTACCGATAAAACTGACACT
* *
37624309 TCTACCGATACAACTGACTCT
1 TCTACCGATAAAACTGACACT
37624330 TCT
1 TCT
37624333 GCCAAACAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (21 bp):
TCTACCGATAAAACTGACACT
Found at i:37625126 original size:53 final size:53
Alignment explanation
Indices: 37625005--37625306 Score: 437
Period size: 53 Copynumber: 5.7 Consensus size: 53
37624995 TTCACATTTG
* *
37625005 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCTTGAT-GGATTCGT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* * * * *
37625057 GTAGCTCATGATGACACAAAGTTATCGGATCC-TTAATCCATGATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGA-CCTTTAATCCATGATAGGATTCAT
* *
37625110 ATAACTCACGATGACACATAATCATCGGACCTTTAATCCATGATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* * * *
37625163 ATAACTCACAATGACATAGAGTCATCAGACCTTTAATCCGTGATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
*
37625216 ATAACTCACGATGACACAGAGTCATCAGACCTTTAATCCATGATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* *
37625269 ATAACACACGATGACACAGAGTCATCGAACCTTTAATC
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATC
37625307 TTTGGCATAA
Statistics
Matches: 222, Mismatches: 25, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
52 37 0.17
53 185 0.83
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (53 bp):
ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
Found at i:37632353 original size:53 final size:53
Alignment explanation
Indices: 37632232--37632586 Score: 507
Period size: 53 Copynumber: 6.7 Consensus size: 53
37632222 TTCGCATTTG
37632232 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGAT-GGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* * * * *
37632284 GTAACTCACGATGACACAAAGTCATCGGACCCTTAATCCATAATAAGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* *
37632337 ATAACTCACGATGACACATAGTCATCGGACCTTTAATTCATGATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* * *
37632390 ATAACTCACGATGACACAGAGTCATCGGACCTTTAACCCGTCATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* *
37632443 ATAACTCACAATGACACAGAGTCATCGGACCTTTAGTCCATGATAGGATTCAT
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* * * * *
37632496 ATAACTAATGATGACACA-AGATTATCAGACCTTTAATCCGTGATAGGATTCAT
1 ATAACTCACGATGACACAGAG-TCATCGGACCTTTAATCCATGATAGGATTCAT
* * *
37632549 ATAACTCACGATGAAATAGAGTCATTGGACCTTTAATC
1 ATAACTCACGATGACACAGAGTCATCGGACCTTTAATC
37632587 TTTGGCACAA
Statistics
Matches: 265, Mismatches: 35, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
52 42 0.16
53 221 0.83
54 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (53 bp):
ATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
Found at i:37633428 original size:21 final size:20
Alignment explanation
Indices: 37633404--37633447 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
37633394 ACTTCCAACA
* *
37633404 TTAAGCTTTAATTAACCCTTT
1 TTAAGC-TTAATTAAACCTAT
*
37633425 TTAATCTTAATTAAACCTAT
1 TTAAGCTTAATTAAACCTAT
37633445 TTA
1 TTA
37633448 TACTTAGGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.34, C:0.16, G:0.02, T:0.48
Consensus pattern (20 bp):
TTAAGCTTAATTAAACCTAT
Found at i:37642372 original size:12 final size:12
Alignment explanation
Indices: 37642351--37642380 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37642341 TCAAGACAAC
*
37642351 GAAGAGAAAGAA
1 GAAGAAAAAGAA
37642363 GAAGAAAAAGAA
1 GAAGAAAAAGAA
37642375 GAAGAA
1 GAAGAA
37642381 GAACCTGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (12 bp):
GAAGAAAAAGAA
Found at i:37642801 original size:17 final size:17
Alignment explanation
Indices: 37642779--37642816 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
37642769 AGTTTTCTTA
*
37642779 CATTTTTATTGT-GCTTG
1 CATTTTAATTGTCG-TTG
37642796 CATTTTAATTGTCGTTG
1 CATTTTAATTGTCGTTG
37642813 CATT
1 CATT
37642817 CATTTTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.16, C:0.13, G:0.16, T:0.55
Consensus pattern (17 bp):
CATTTTAATTGTCGTTG
Found at i:37645636 original size:39 final size:39
Alignment explanation
Indices: 37645591--37645769 Score: 178
Period size: 39 Copynumber: 4.6 Consensus size: 39
37645581 AGTATTACGC
* *
37645591 TGTTTACAGTGTCACCGCCAATTCAGTATAGCAATGCAG
1 TGTTTACAGTGTCACTGCCAATTCAGTATAGCATTGCAG
* *** * * *
37645630 TATTTACAGTGTCACTGCCTGCTCAGTTTATCATTGTAG
1 TGTTTACAGTGTCACTGCCAATTCAGTATAGCATTGCAG
* * * *
37645669 TGTTTACAATGTCACTGCTAATTCAGTATAGCGTTGCAA
1 TGTTTACAGTGTCACTGCCAATTCAGTATAGCATTGCAG
*** * *
37645708 TGTTTACAGTGTCACTGCTGGTTCAGCATAACATTGCAG
1 TGTTTACAGTGTCACTGCCAATTCAGTATAGCATTGCAG
* *
37645747 TGTTTATAGTGTCACTGCTAATT
1 TGTTTACAGTGTCACTGCCAATT
37645770 TCGTATATTT
Statistics
Matches: 110, Mismatches: 30, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (39 bp):
TGTTTACAGTGTCACTGCCAATTCAGTATAGCATTGCAG
Found at i:37645776 original size:78 final size:78
Alignment explanation
Indices: 37645591--37645769 Score: 225
Period size: 78 Copynumber: 2.3 Consensus size: 78
37645581 AGTATTACGC
* * *
37645591 TGTTTACAGTGTCACCGCCAATTCAGTATAGCAATGCAGTATTTACAGTGTCACTGCCTGCTCAG
1 TGTTTACAGTGTCACTGCTAATTCAGTATAGCAATGCAATATTTACAGTGTCACTGCCTGCTCAG
** * *
37645656 TTTATCATTGTAG
66 CATAACATTGCAG
* ** * *
37645669 TGTTTACAATGTCACTGCTAATTCAGTATAGCGTTGCAATGTTTACAGTGTCACTG-CTGGTTCA
1 TGTTTACAGTGTCACTGCTAATTCAGTATAGCAATGCAATATTTACAGTGTCACTGCCT-GCTCA
37645733 GCATAACATTGCAG
65 GCATAACATTGCAG
*
37645747 TGTTTATAGTGTCACTGCTAATT
1 TGTTTACAGTGTCACTGCTAATT
37645770 TCGTATATTT
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
77 2 0.02
78 84 0.98
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (78 bp):
TGTTTACAGTGTCACTGCTAATTCAGTATAGCAATGCAATATTTACAGTGTCACTGCCTGCTCAG
CATAACATTGCAG
Found at i:37655166 original size:61 final size:59
Alignment explanation
Indices: 37655101--37655215 Score: 178
Period size: 61 Copynumber: 1.9 Consensus size: 59
37655091 GATATTATCA
* *
37655101 TAATATTTAATTTAATTTAATATTTATCTTGTAGATAAATATTTTATT-ATTTAATAAGATT
1 TAATATTAAATTTAATTTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAGATT
37655162 TAATATTAAATTTAATTTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TAATATTAAATTTAATTTAATATTTATCTTGATAAATATTATATTAATTTAATA
37655216 TTAAGGTGAT
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
58 14 0.27
59 9 0.18
60 1 0.02
61 27 0.53
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (59 bp):
TAATATTAAATTTAATTTAATATTTATCTTGATAAATATTATATTAATTTAATAAGATT
Found at i:37656199 original size:24 final size:25
Alignment explanation
Indices: 37656159--37656207 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
37656149 TTTTATAATT
*
37656159 TGTTATAATATTTATAT-TATATAA
1 TGTTATAATATTGATATATATATAA
37656183 TGTTATAAT-TATGATATATATATAA
1 TGTTATAATAT-TGATATATATATAA
37656208 GATGATCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 14 0.64
25 7 0.32
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (25 bp):
TGTTATAATATTGATATATATATAA
Found at i:37667342 original size:12 final size:12
Alignment explanation
Indices: 37667317--37667372 Score: 73
Period size: 11 Copynumber: 4.9 Consensus size: 12
37667307 CATTTTGAAA
37667317 TTAAATTT-ATT
1 TTAAATTTAATT
*
37667328 TTAAATTCAATT
1 TTAAATTTAATT
*
37667340 TTAATTTTAATT
1 TTAAATTTAATT
37667352 TT-AATTTAA-T
1 TTAAATTTAATT
37667362 TTAAATTTAAT
1 TTAAATTTAAT
37667373 ATTATTATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
10 3 0.08
11 20 0.53
12 15 0.39
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (12 bp):
TTAAATTTAATT
Found at i:37667342 original size:17 final size:17
Alignment explanation
Indices: 37667308--37667386 Score: 72
Period size: 17 Copynumber: 4.6 Consensus size: 17
37667298 AGCCCAAGCC
*
37667308 ATTTTGAAA-TTAAATTT
1 ATTTT-AAATTTAATTTT
*
37667325 ATTTTAAATTCAATTTT
1 ATTTTAAATTTAATTTT
*
37667342 AATTTTAATTTTAA-TTT
1 -ATTTTAAATTTAATTTT
* *
37667359 AATTTAAATTTAATATT
1 ATTTTAAATTTAATTTT
*
37667376 ATTATAAATTT
1 ATTTTAAATTT
37667387 TAAAAAAGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
16 14 0.28
17 25 0.50
18 11 0.22
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (17 bp):
ATTTTAAATTTAATTTT
Found at i:37667343 original size:23 final size:21
Alignment explanation
Indices: 37667317--37667370 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 21
37667307 CATTTTGAAA
37667317 TTAAATTTATTTTAAATTCAATT
1 TTAAATTTATTTT-AATTCAA-T
* *
37667340 TTAATTTTAATTTTAATTTAAT
1 TTAAATTT-ATTTTAATTCAAT
37667362 TTAAATTTA
1 TTAAATTTA
37667371 ATATTATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 8 0.30
23 13 0.48
24 5 0.19
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
TTAAATTTATTTTAATTCAAT
Found at i:37667347 original size:6 final size:6
Alignment explanation
Indices: 37667325--37667369 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
37667315 AATTAAATTT
* * *
37667325 ATTTTA AATTCA ATTTTA ATTTTA ATTTTA A-TTTA ATTTAA ATTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTT
37667370 AATATTATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
5 5 0.15
6 28 0.85
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (6 bp):
ATTTTA
Found at i:37667386 original size:34 final size:34
Alignment explanation
Indices: 37667320--37667389 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
37667310 TTTGAAATTA
* * *
37667320 AATTTATTTTAAATTCAATTTTAATTTTAATTTT
1 AATTTAATTTAAATTCAATATTAATTTAAATTTT
*
37667354 AATTTAATTTAAATTTAATATT-ATTATAAATTTT
1 AATTTAATTTAAATTCAATATTAATT-TAAATTTT
37667388 AA
1 AA
37667390 AAAAGAAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 3 0.10
34 28 0.90
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (34 bp):
AATTTAATTTAAATTCAATATTAATTTAAATTTT
Found at i:37669296 original size:29 final size:29
Alignment explanation
Indices: 37669235--37669401 Score: 110
Period size: 30 Copynumber: 5.6 Consensus size: 29
37669225 AACTATCTAG
* * * *
37669235 AAATTACATTTCAACCCAAAAAATTTTGAA
1 AAATTACATTTTAACCC-CAAAACTTTCAA
37669265 AAATTACATTTTAACCCCAAAACTTTCAA
1 AAATTACATTTTAACCCCAAAACTTTCAA
* *
37669294 AAATTACCATTTTAGA-CCCAAATCTTTCCA
1 AAATTA-CATTTTA-ACCCCAAAACTTTCAA
* *
37669324 AAATTCCATTTTTAACCCC--GA-TTTCATCCA
1 AAATTACA-TTTTAACCCCAAAACTTTCA---A
* **
37669354 AAATTACCATTTT-ACCCCTAAACTTTCTT
1 AAATTA-CATTTTAACCCCAAAACTTTCAA
*
37669383 AAATTCCATTTTTAACCCC
1 AAATTACA-TTTTAACCCC
37669402 GATTTCACCT
Statistics
Matches: 109, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
27 4 0.04
28 2 0.02
29 32 0.29
30 63 0.58
31 4 0.04
32 4 0.04
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.35
Consensus pattern (29 bp):
AAATTACATTTTAACCCCAAAACTTTCAA
Found at i:37669390 original size:59 final size:57
Alignment explanation
Indices: 37669293--37669606 Score: 299
Period size: 59 Copynumber: 5.3 Consensus size: 57
37669283 AAAACTTTCA
* *
37669293 AAAATTACCATTTTAGACCC-AAATCTTTCCAAAATTCCATTTTTAACCCCGATTTCATCC
1 AAAATTACCATTTTA-CCCCTAAA-CTTT-CTAAATTCCATTTTTAACCCCGATTTCA-CC
37669353 AAAATTACCATTTTACCCCTAAACTTTCTTAAATTCCATTTTTAACCCCGATTTCACC
1 AAAATTACCATTTTACCCCTAAACTTTC-TAAATTCCATTTTTAACCCCGATTTCACC
* *
37669411 TAAAATTACCATTTTACCCCTAAAATTTCCTAAATTCCATTTTTAACCCCGATTTTACC
1 -AAAATTACCATTTTACCCCTAAACTTT-CTAAATTCCATTTTTAACCCCGATTTCACC
* * * * *** * * * *
37669470 AAAAATTACCATTTTACCCTCGAACCTTACAAAATTTTGTTTTTGACACTGATTTTACC
1 -AAAATTACCATTTTACCC-CTAAACTTTCTAAATTCCATTTTTAACCCCGATTTCACC
** * * * *
37669529 AAAATTTACCATTTTTACCCCCGAAC-TTCTAAAGTTCCATTTTTAGCCTCAATTTCTCC
1 AAAA-TTACCA-TTTTACCCCTAAACTTTCTAAA-TTCCATTTTTAACCCCGATTTCACC
* *
37669588 AAAATTACAATTTTCCCCC
1 AAAATTACCATTTTACCCC
37669607 GAAAGTCCAA
Statistics
Matches: 212, Mismatches: 34, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
57 8 0.04
58 17 0.08
59 155 0.73
60 32 0.15
ACGTcount: A:0.32, C:0.27, G:0.04, T:0.38
Consensus pattern (57 bp):
AAAATTACCATTTTACCCCTAAACTTTCTAAATTCCATTTTTAACCCCGATTTCACC
Found at i:37669485 original size:30 final size:28
Alignment explanation
Indices: 37669264--37669485 Score: 141
Period size: 30 Copynumber: 7.5 Consensus size: 28
37669254 AAAATTTTGA
* *
37669264 AAAATTA-CATTTTAACCCCAAAACTTTCA
1 AAAATTACCATTTTAACCCC--AATTTTCC
*
37669293 AAAATTACCATTTTAGACCCAAATCTTTCC
1 AAAATTACCATTTTA-ACCCCAAT-TTTCC
*
37669323 AAAATT-CCATTTTTAACCCCGATTTCATCC
1 AAAATTACCA-TTTTAACCCCAATTT--TCC
* *
37669353 AAAATTACCATTTT-ACCCCTAAACTTTCT
1 AAAATTACCATTTTAACCCC--AATTTTCC
* * *
37669382 TAAATT-CCATTTTTAACCCCGATTTCACC
1 AAAATTACCA-TTTTAACCCCAATTT-TCC
*
37669411 TAAAATTACCATTTT-ACCCCTAAAATTTCC
1 -AAAATTACCATTTTAACCCC--AATTTTCC
* *
37669441 TAAATT-CCATTTTTAACCCCGATTTTACC
1 AAAATTACCA-TTTTAACCCCAATTTT-CC
37669470 AAAAATTACCATTTTA
1 -AAAATTACCATTTTA
37669486 CCCTCGAACC
Statistics
Matches: 151, Mismatches: 21, Indels: 41
0.71 0.10 0.19
Matches are distributed among these distances:
28 15 0.10
29 51 0.34
30 66 0.44
31 19 0.13
ACGTcount: A:0.35, C:0.27, G:0.02, T:0.36
Consensus pattern (28 bp):
AAAATTACCATTTTAACCCCAATTTTCC
Found at i:37678998 original size:32 final size:33
Alignment explanation
Indices: 37678960--37679032 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 33
37678950 TCAAACTTGT
* ** *
37678960 TTATTTTATTAATTTTGTTTTGATTAAATTT-G
1 TTATTTTACTAATTTCATTTTGACTAAATTTAG
* *
37678992 TTATTTTCCTAATTTCATTTTGACTAAATTTAT
1 TTATTTTACTAATTTCATTTTGACTAAATTTAG
37679025 TTATTTTA
1 TTATTTTA
37679033 AGTAAATAGG
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
32 26 0.79
33 7 0.21
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (33 bp):
TTATTTTACTAATTTCATTTTGACTAAATTTAG
Found at i:37680035 original size:149 final size:149
Alignment explanation
Indices: 37679765--37680064 Score: 582
Period size: 149 Copynumber: 2.0 Consensus size: 149
37679755 GTCGTACCAG
37679765 AACCAGCTACGAAAGGAAGAATTGATAGCTAGGATGTTCTTAGCTGCTATAAGCAGCTTCCTGAT
1 AACCAGCTACGAAAGGAAGAATTGATAGCTAGGATGTTCTTAGCTGCTATAAGCAGCTTCCTGAT
37679830 CGAAGGAGAAAATATCATTTCAAGGATCGAATCAAAAACTGGAGCACACCGAGTTTAAGGCTAAG
66 CGAAGGAGAAAATATCATTTCAAGGATCGAATCAAAAACTGGAGCACACCGAGTTTAAGGCTAAG
37679895 GTTATTTAATTCTGATTAC
131 GTTATTTAATTCTGATTAC
*
37679914 AACCAGCTACGAAAGGAAGAATTGATGGCTAGGATGTTCTTAGCTGCTATAAGCAGCTTCCTGAT
1 AACCAGCTACGAAAGGAAGAATTGATAGCTAGGATGTTCTTAGCTGCTATAAGCAGCTTCCTGAT
37679979 CGAAGGAGAAAATATCATTTCAAGGATCGAATCAAAAACTGGAGCACACCGAGTTTAAGGCTAAG
66 CGAAGGAGAAAATATCATTTCAAGGATCGAATCAAAAACTGGAGCACACCGAGTTTAAGGCTAAG
*
37680044 GTTATTTAATTCTTATTAC
131 GTTATTTAATTCTGATTAC
37680063 AA
1 AA
37680065 ATTTATATTT
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (149 bp):
AACCAGCTACGAAAGGAAGAATTGATAGCTAGGATGTTCTTAGCTGCTATAAGCAGCTTCCTGAT
CGAAGGAGAAAATATCATTTCAAGGATCGAATCAAAAACTGGAGCACACCGAGTTTAAGGCTAAG
GTTATTTAATTCTGATTAC
Found at i:37683888 original size:280 final size:284
Alignment explanation
Indices: 37683516--37684093 Score: 871
Period size: 281 Copynumber: 2.0 Consensus size: 284
37683506 GAATTTAAAT
*
37683516 TCAATAATTTTTATTTTTGTAGTTTTTGTGGATATCGTACCAAGCAAAAGATATTGTAACCATAC
1 TCAATAATTTTTATTTTTGCAGTTTTTGTGGATATCGTACCAAGCAAAAGATATTGTAACCATAC
*
37683581 TACCACTAAGGGCATGTGTGCACAACCATGTTTT-TACCATCCACATG-CCCATTATATGCTTTT
66 TACCACTAAGGGCATGTGTGCACAACCATATTTTCTACCATCCACATGTCCC-TTATATGCTTTT
* * *
37683644 CCTACATCGAGTGGCATCAA-TCGAGTGAGGTATTATAATAGTTTGGGATGTTCCAAGTGATTCT
130 CCTACACCGAATGGCATCAACT-GAGTGAGGTATTATAATAGTTTGGGATGTTCCAAGGGATTCT
* *
37683708 AACAAATC-C-ATGACTATCATCCATAAATTTGCGTTTGAGGCATAAGCGTAATTGGGCTATTAA
194 AACAAATCACGATGACTATCATCCATAAATTTGCATTTGAGGCATAAGCGTAATTGGACTATTAA
37683771 ATTTGTACAACATGTGGCATATTGGA
259 ATTTGTACAACATGTGGCATATTGGA
* * * *
37683797 TCAATAGTTTTTA-TTTTGCAGTTTTTGTGGATGTCGTATCAAGCAGAAGATATTGTAACCATAC
1 TCAATAATTTTTATTTTTGCAGTTTTTGTGGATATCGTACCAAGCAAAAGATATTGTAACCATAC
* *
37683861 TACCACTAGGGGCATGTGTGCACAACCATATTTTCTACTATCCACATGTCCCTTATATGCTTTTC
66 TACCACTAAGGGCATGTGTGCACAACCATATTTTCTACCATCCACATGTCCCTTATATGCTTTTC
*
37683926 CTACACCGAATGGCATCAACTGAGTGAGGTATTATGATAGTTTGGGATGTTCCAAGGGATTCTAA
131 CTACACCGAATGGCATCAACTGAGTGAGGTATTATAATAGTTTGGGATGTTCCAAGGGATTCTAA
*
37683991 CAGATCTGGAGAACATGGATGACTATCATCCATAAATTTGCATTTGAGGCATAAGCGTAATTGGA
196 CAAATC------AC---GATGACTATCATCCATAAATTTGCATTTGAGGCATAAGCGTAATTGGA
*
37684056 CTATTAAATTTGTACAATATGTGGCATATTGGA
252 CTATTAAATTTGTACAACATGTGGCATATTGGA
37684089 TCAAT
1 TCAAT
37684094 CGATTTTAGC
Statistics
Matches: 267, Mismatches: 16, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
280 79 0.30
281 101 0.38
282 4 0.01
288 1 0.00
292 82 0.31
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (284 bp):
TCAATAATTTTTATTTTTGCAGTTTTTGTGGATATCGTACCAAGCAAAAGATATTGTAACCATAC
TACCACTAAGGGCATGTGTGCACAACCATATTTTCTACCATCCACATGTCCCTTATATGCTTTTC
CTACACCGAATGGCATCAACTGAGTGAGGTATTATAATAGTTTGGGATGTTCCAAGGGATTCTAA
CAAATCACGATGACTATCATCCATAAATTTGCATTTGAGGCATAAGCGTAATTGGACTATTAAAT
TTGTACAACATGTGGCATATTGGA
Found at i:37685915 original size:82 final size:82
Alignment explanation
Indices: 37685768--37685928 Score: 277
Period size: 82 Copynumber: 2.0 Consensus size: 82
37685758 AAGTATTATC
*
37685768 ATGTAATCACACAGAGACCATTGATAGAGGTTGTAAACCTTGTTTTGGGACATTCTCCCATTCAA
1 ATGTAATCACACAGAGACCATTGATAGAGGTTGTAAACCTTGTTTTGAGACATTCTCCCATTCAA
37685833 TATTAAAAAAAAAAACT
66 TATTAAAAAAAAAAACT
* * * *
37685850 ATGTCATCATACAGAGACCATTGATAGAGGTTGTAAATCTTGTTTTGAGACCTTCTCCCATTCAA
1 ATGTAATCACACAGAGACCATTGATAGAGGTTGTAAACCTTGTTTTGAGACATTCTCCCATTCAA
37685915 TATTAAAAAAAAAA
66 TATTAAAAAAAAAA
37685929 CAAAAAACTA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 74 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (82 bp):
ATGTAATCACACAGAGACCATTGATAGAGGTTGTAAACCTTGTTTTGAGACATTCTCCCATTCAA
TATTAAAAAAAAAAACT
Found at i:37690873 original size:26 final size:26
Alignment explanation
Indices: 37690841--37690894 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
37690831 CTAATTAATT
*
37690841 GGATGAAGAAATTGTTTTTTAGTGGA
1 GGATGAAGAAAGTGTTTTTTAGTGGA
37690867 GGATGAAGAAAGTGTTTTTTAGTGGA
1 GGATGAAGAAAGTGTTTTTTAGTGGA
37690893 GG
1 GG
37690895 TTAGCAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.35, T:0.35
Consensus pattern (26 bp):
GGATGAAGAAAGTGTTTTTTAGTGGA
Found at i:37692144 original size:23 final size:24
Alignment explanation
Indices: 37692087--37692144 Score: 57
Period size: 23 Copynumber: 2.4 Consensus size: 24
37692077 TTTAACATTT
*
37692087 AAATAATTTTAGTTGTAAAATTAA
1 AAATATTTTTAGTTGTAAAATTAA
* *
37692111 TAATTTATTTTAG-T-TAAAATTAGA
1 AAATAT-TTTTAGTTGTAAAATTA-A
37692135 AAATATTTTT
1 AAATATTTTT
37692145 TTATTATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
23 12 0.44
24 9 0.33
25 6 0.22
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (24 bp):
AAATATTTTTAGTTGTAAAATTAA
Found at i:37699671 original size:16 final size:16
Alignment explanation
Indices: 37699650--37699680 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37699640 AATTAATTTA
*
37699650 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
37699666 AATTAAATAATTTTC
1 AATTAAATAATTTTC
37699681 TTAACTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:37703715 original size:21 final size:21
Alignment explanation
Indices: 37703685--37703736 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
37703675 GGTAGGTGGG
37703685 TATCGCGATACGCAAAATGGA
1 TATCGCGATACGCAAAATGGA
* * *
37703706 TATCGTGATACTCAAAGTGGA
1 TATCGCGATACGCAAAATGGA
*
37703727 TATTGCGATA
1 TATCGCGATA
37703737 AAATTGTAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (21 bp):
TATCGCGATACGCAAAATGGA
Found at i:37706100 original size:24 final size:24
Alignment explanation
Indices: 37706073--37706129 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
37706063 TAAAGGAGCC
*
37706073 ATTAAATCAATAAAATCAATTTAA
1 ATTAAATCAATAAAATAAATTTAA
* * *
37706097 ATTAAATAAATTAACTAAATTTAA
1 ATTAAATCAATAAAATAAATTTAA
37706121 ATTAAATCA
1 ATTAAATCA
37706130 GTTTAAATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (24 bp):
ATTAAATCAATAAAATAAATTTAA
Found at i:37706108 original size:15 final size:15
Alignment explanation
Indices: 37706103--37706150 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
37706093 TTAAATTAAA
*
37706103 TAAATTAACTAAATT
1 TAAATTAAATAAATT
* *
37706118 TAAATTAAATCAGTT
1 TAAATTAAATAAATT
* *
37706133 TAAATTAATTTAATT
1 TAAATTAAATAAATT
37706148 TAA
1 TAA
37706151 TATTTTTCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (15 bp):
TAAATTAAATAAATT
Found at i:37709944 original size:13 final size:13
Alignment explanation
Indices: 37709926--37709959 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37709916 GCTTTTTTCT
37709926 CAATTTAATACCA
1 CAATTTAATACCA
**
37709939 CAATTTAATGGCA
1 CAATTTAATACCA
37709952 CAATTTAA
1 CAATTTAA
37709960 GGTTTTGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (13 bp):
CAATTTAATACCA
Found at i:37709945 original size:44 final size:44
Alignment explanation
Indices: 37709892--37709992 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 44
37709882 ATTTTTTATG
* * *
37709892 CCACAATTTAA-AGCTACAATTTAAGCTTTTTTCTCAATTTAATA
1 CCACAATTTAATAGC-ACAATTTAAGCTTTTGTCACAATTTAAGA
* * *
37709936 CCACAATTTAATGGCACAATTTAAGGTTTTGTCACAATTTAAGG
1 CCACAATTTAATAGCACAATTTAAGCTTTTGTCACAATTTAAGA
37709980 CCACAATTTAATA
1 CCACAATTTAATA
37709993 ATAAAGCCTC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 47 0.96
45 2 0.04
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.37
Consensus pattern (44 bp):
CCACAATTTAATAGCACAATTTAAGCTTTTGTCACAATTTAAGA
Found at i:37710368 original size:79 final size:79
Alignment explanation
Indices: 37710256--37710524 Score: 359
Period size: 79 Copynumber: 3.4 Consensus size: 79
37710246 GGTAGGATAA
* *
37710256 AATAAATCTTGAAACAGAATTATTTTAATTTATTTCTT-TTTGGAAACAGAAACTTGAATGAATT
1 AATAAATCTTGAAACAGAATTATTTTAATTTATTTCTTGTTTTGAAACAGAAACTTGAATTAATT
* * *
37710320 CTATTGAACGACTG
66 CTGTTGAACGGCAG
* **
37710334 TAATAAAT-TCTGAAACAGAATTATTTTAATTTATTT-TTGTTTTGAAATAGAAACTCAAATTAA
1 -AATAAATCT-TGAAACAGAATTATTTTAATTTATTTCTTGTTTTGAAACAGAAACTTGAATTAA
*
37710397 TACTGTTGAACGGCAG
64 TTCTGTTGAACGGCAG
*
37710413 AAATAAATCTTGAAATAGAATTATTTTAATTTA-TTCTTGTTTTGAAACAGAAACTTGAATTAAT
1 -AATAAATCTTGAAACAGAATTATTTTAATTTATTTCTTGTTTTGAAACAGAAACTTGAATTAAT
*
37710477 TCTGTTGAATGGCAAG
65 TCTGTTGAACGGC-AG
*
37710493 AATAAATCTTGAAACAGAATTA-TTCAATTTAT
1 AATAAATCTTGAAACAGAATTATTTTAATTTAT
37710525 GTTTACGAAC
Statistics
Matches: 166, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
78 13 0.08
79 150 0.90
80 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.39
Consensus pattern (79 bp):
AATAAATCTTGAAACAGAATTATTTTAATTTATTTCTTGTTTTGAAACAGAAACTTGAATTAATT
CTGTTGAACGGCAG
Found at i:37721994 original size:8 final size:7
Alignment explanation
Indices: 37721956--37721992 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
37721946 ATGTGTATTT
37721956 TTTTTAA
1 TTTTTAA
*
37721963 TTTTTAG
1 TTTTTAA
37721970 TTTTTAA
1 TTTTTAA
37721977 TTTTTAA
1 TTTTTAA
37721984 TATTTTAA
1 T-TTTTAA
37721992 T
1 T
37721993 ATACCCTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 20 0.74
8 7 0.26
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (7 bp):
TTTTTAA
Found at i:37723421 original size:10 final size:8
Alignment explanation
Indices: 37723390--37723417 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
37723380 ATTGTAGATT
37723390 TTTTAATA
1 TTTTAATA
37723398 TTTTAATA
1 TTTTAATA
37723406 TTTTAATA
1 TTTTAATA
37723414 TTTT
1 TTTT
37723418 TTAAAACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (8 bp):
TTTTAATA
Found at i:37724924 original size:29 final size:30
Alignment explanation
Indices: 37724846--37724924 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
37724836 TTTCAAAATT
* *
37724846 TAAAAAGTATAGGAACTAAAATTGATCAAT
1 TAAAAAGTATAGGGACTAAAATTGATCAAA
* *
37724876 TAAAAAGTAAAAGGACTAAAATTGATCAAA
1 TAAAAAGTATAGGGACTAAAATTGATCAAA
*
37724906 T-AAAAGTATAGGGATTAAA
1 TAAAAAGTATAGGGACTAAA
37724925 TCTATAACTT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 15 0.36
30 27 0.64
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.24
Consensus pattern (30 bp):
TAAAAAGTATAGGGACTAAAATTGATCAAA
Found at i:37729954 original size:14 final size:14
Alignment explanation
Indices: 37729935--37729963 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37729925 ATTTTATACA
37729935 AGTTAGAAAAATAT
1 AGTTAGAAAAATAT
37729949 AGTTAGAAAAATAT
1 AGTTAGAAAAATAT
37729963 A
1 A
37729964 AATGGATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.28
Consensus pattern (14 bp):
AGTTAGAAAAATAT
Found at i:37730479 original size:27 final size:28
Alignment explanation
Indices: 37730426--37730487 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
37730416 TTTTAAACTG
** * *
37730426 GTAATACTTATTTTTTATCTATGAAAAT
1 GTAATACGAATTTTTAATCTATAAAAAT
37730454 GTAATACGAATTTTTAATC-ATAAAAAT
1 GTAATACGAATTTTTAATCTATAAAAAT
*
37730481 TTAATAC
1 GTAATAC
37730488 ATACTATTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 13 0.45
28 16 0.55
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (28 bp):
GTAATACGAATTTTTAATCTATAAAAAT
Found at i:37730650 original size:14 final size:15
Alignment explanation
Indices: 37730620--37730657 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
37730610 AAAATTATTG
37730620 TTAAATTATAAAAAT
1 TTAAATTATAAAAAT
*
37730635 TTAAATT-TAAATAT
1 TTAAATTATAAAAAT
37730649 TTAAATTAT
1 TTAAATTAT
37730658 GTTATATCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAAATTATAAAAAT
Found at i:37737846 original size:23 final size:22
Alignment explanation
Indices: 37737820--37737882 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 22
37737810 TTAACTTAAT
37737820 CGAACATGTTCACGAATATCAAA
1 CGAACATGTTCACGAATAT-AAA
* *
37737843 CGAACATGTTCATGAACATATAAT
1 CGAACATGTTCACG-A-ATATAAA
*
37737867 TGAACATGTTCACGAA
1 CGAACATGTTCACGAA
37737883 CAATGTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
22 1 0.03
23 14 0.41
24 15 0.44
25 4 0.12
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.25
Consensus pattern (22 bp):
CGAACATGTTCACGAATATAAA
Found at i:37738972 original size:91 final size:92
Alignment explanation
Indices: 37738837--37739111 Score: 342
Period size: 91 Copynumber: 3.0 Consensus size: 92
37738827 TTTTCTTTTT
* * *
37738837 ATGATTTGTTATTTATTTTTTTAAAATTTAAATTTTTTTATGGTGTCATATTCAATGACGTCACC
1 ATGATTTATTATTTATTTTTTT-AAATTTAAATTTTTTTGTGGTGTCATATTAAATGACGTCACC
37738902 ACTTTCCTTAAATCAGGTTCTTTTTTTAA
65 ACTTTCCTTAAATCA-GTTCTTTTTTTAA
* * *
37738931 ATGATTTATTATTTA-TTTTTT-AATTTAAATTTTTTTGTGGTGCCATATTAAATGGCGTAACCA
1 ATGATTTATTATTTATTTTTTTAAATTTAAATTTTTTTGTGGTGTCATATTAAATGACGTCACCA
* *
37738994 CTTTCCCTAAATTTCAGCTCTTTTTTTAA
66 CTTTCCTTAAA--TCAGTTCTTTTTTTAA
* ** *
37739023 ATGATTTATTA-TTATTTTTTTAAATTTAAATTTTTTTGGTGGTGTTATATTAAATGACACCATC
1 ATGATTTATTATTTATTTTTTTAAATTTAAATTTTTTT-GTGGTGTCATATTAAATGACGTCACC
* *
37739087 AC-TTCCTTAAAGCATGTTCCTTTTT
65 ACTTTCCTTAAATCA-GTTCTTTTTT
37739112 CTTTTTATTT
Statistics
Matches: 156, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
91 52 0.33
92 37 0.24
93 32 0.21
94 35 0.22
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.52
Consensus pattern (92 bp):
ATGATTTATTATTTATTTTTTTAAATTTAAATTTTTTTGTGGTGTCATATTAAATGACGTCACCA
CTTTCCTTAAATCAGTTCTTTTTTTAA
Found at i:37739035 original size:92 final size:95
Alignment explanation
Indices: 37738771--37739078 Score: 364
Period size: 91 Copynumber: 3.3 Consensus size: 95
37738761 CAATTTTGCC
* * *
37738771 TTTTTTTGGTGGTGCCATATTAAATGGCGCCACCACTTCCCCAAAATTT--GTCTGGCTTTTCTT
1 TTTTTTTGGTGGTGCCATATTAAATGGCGTCACCACTTTCCCTAAATTTCAG-CT--CTTTT-TT
** *
37738834 TTTATGATTTGTTATTTATTTTTTTAAAATTTAAA
62 TAAATGATTTATTATTTATTTTTTT-AAATTTAAA
* * * * * *
37738869 TTTTTTT-ATGGTGTCATATTCAATGACGTCACCACTTTCCTTAAA--TCAGGTTCTTTTTTTAA
1 TTTTTTTGGTGGTGCCATATTAAATGGCGTCACCACTTTCCCTAAATTTCA-GCTCTTTTTTTAA
37738931 ATGATTTATTATTTA-TTTTTT-AATTTAAA
65 ATGATTTATTATTTATTTTTTTAAATTTAAA
*
37738960 TTTTTTT-GTGGTGCCATATTAAATGGCGTAACCACTTTCCCTAAATTTCAGCTCTTTTTTTAAA
1 TTTTTTTGGTGGTGCCATATTAAATGGCGTCACCACTTTCCCTAAATTTCAGCTCTTTTTTTAAA
37739024 TGATTTATTA-TTATTTTTTTAAATTTAAA
66 TGATTTATTATTTATTTTTTTAAATTTAAA
**
37739053 TTTTTTTGGTGGTGTTATATTAAATG
1 TTTTTTTGGTGGTGCCATATTAAATG
37739079 ACACCATCAC
Statistics
Matches: 181, Mismatches: 21, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
91 50 0.28
92 29 0.16
93 24 0.13
94 33 0.18
95 6 0.03
97 31 0.17
98 8 0.04
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.51
Consensus pattern (95 bp):
TTTTTTTGGTGGTGCCATATTAAATGGCGTCACCACTTTCCCTAAATTTCAGCTCTTTTTTTAAA
TGATTTATTATTTATTTTTTTAAATTTAAA
Found at i:37739128 original size:188 final size:189
Alignment explanation
Indices: 37738771--37739140 Score: 450
Period size: 188 Copynumber: 2.0 Consensus size: 189
37738761 CAATTTTGCC
* *
37738771 TTTTTTTGGTGGTGCCATATTAAATGGCGCCACCACTTCCCCAAAATTTGTCTGGCTTTTCTTTT
1 TTTTTTTGGTGGTGCCATATTAAATGGCGCAACCACTTCCCCAAAATTTGTCT-GCTTTTCTTTA
* * * **
37738836 TATGATTTGTTATTTATTTTTTTAAAATTTAAATTTTTTTATGGTGTCATATTCAATGACGTCAC
65 AATGATTTATTATTTATTTTTTTAAAATTTAAATTTTTTTATGGTGTCATATTAAATGACACCAC
*
37738901 CACTTTCCTTAAATCAGGTTCTTTTTTTAAATGATTTATTATTT-ATTTTTTAATTTAAA
130 CACTTTCCTTAAAGCAGGTTCTTTTTTTAAATGATTTATTATTTAATTTTTTAATTTAAA
* * *
37738960 TTTTTTT-GTGGTGCCATATTAAATGGCGTAACCACTTTCCCTAAATTTCAG-CT-CTTTT-TTT
1 TTTTTTTGGTGGTGCCATATTAAATGGCGCAACCACTTCCCCAAAATTT--GTCTGCTTTTCTTT
* *
37739021 AAATGATTTATTA-TTATTTTTTT-AAATTTAAATTTTTTTGGTGGTGTTATATTAAATGACACC
64 AAATGATTTATTATTTATTTTTTTAAAATTTAAATTTTTTT-ATGGTGTCATATTAAATGACACC
* * * * *
37739084 ATCAC-TTCCTTAAAGCATGTTCCTTTTTCTTTTTATTTATTTATTATTTAATTTTTT
128 ACCACTTTCCTTAAAGCAGGTT-C--TTT-TTTTAAATGATTTATTATTTAATTTTTT
37739141 TTGGTGGAGC
Statistics
Matches: 155, Mismatches: 18, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
184 30 0.19
185 33 0.21
186 13 0.08
187 8 0.05
188 54 0.35
189 16 0.10
190 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.10, T:0.52
Consensus pattern (189 bp):
TTTTTTTGGTGGTGCCATATTAAATGGCGCAACCACTTCCCCAAAATTTGTCTGCTTTTCTTTAA
ATGATTTATTATTTATTTTTTTAAAATTTAAATTTTTTTATGGTGTCATATTAAATGACACCACC
ACTTTCCTTAAAGCAGGTTCTTTTTTTAAATGATTTATTATTTAATTTTTTAATTTAAA
Found at i:37739224 original size:18 final size:18
Alignment explanation
Indices: 37739203--37739238 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
37739193 ATTATATAAT
37739203 ATTTAAATATATAGTTTA
1 ATTTAAATATATAGTTTA
*
37739221 ATTTAAATATATATTTTA
1 ATTTAAATATATAGTTTA
37739239 TTTTTGGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
ATTTAAATATATAGTTTA
Found at i:37743244 original size:22 final size:22
Alignment explanation
Indices: 37743195--37743237 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
37743185 TATATTTAGT
* *
37743195 GAAATTTTATTACATAACACTA
1 GAAATTATATGACATAACACTA
37743217 GAAATTATATGACATAACACT
1 GAAATTATATGACATAACACT
37743238 TAAAATTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.33
Consensus pattern (22 bp):
GAAATTATATGACATAACACTA
Found at i:37743576 original size:30 final size:30
Alignment explanation
Indices: 37743542--37743600 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
37743532 TTTACGATAG
* *
37743542 GTTGATCCTCTGAGCCGGGCTCCGTCATAA
1 GTTGATCCTCCGAGCCAGGCTCCGTCATAA
* *
37743572 GTTGATCCTCCGGGTCAGGCTCCGTCATA
1 GTTGATCCTCCGAGCCAGGCTCCGTCATA
37743601 TGTTAACTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.27
Consensus pattern (30 bp):
GTTGATCCTCCGAGCCAGGCTCCGTCATAA
Found at i:37745506 original size:13 final size:13
Alignment explanation
Indices: 37745488--37745512 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37745478 CCTTATCTTT
37745488 AAAATAAAATTTG
1 AAAATAAAATTTG
37745501 AAAATAAAATTT
1 AAAATAAAATTT
37745513 TAATATGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
AAAATAAAATTTG
Found at i:37746040 original size:5 final size:5
Alignment explanation
Indices: 37746030--37746055 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37746020 CACCTCTCCT
37746030 TCTTC TCTTC TCTTC TCTTC TCTTC T
1 TCTTC TCTTC TCTTC TCTTC TCTTC T
37746056 AATTCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
TCTTC
Found at i:37752036 original size:85 final size:85
Alignment explanation
Indices: 37751893--37752063 Score: 306
Period size: 85 Copynumber: 2.0 Consensus size: 85
37751883 TCATTAGAGA
*
37751893 CCATCTTGATGTGCATTTCGGCTTCTTTTTCGTTAGCCAAATCCAGTAAGATGATATTCATCATA
1 CCATCTTGATGTGCATTTCGGCTTCCTTTTCGTTAGCCAAATCCAGTAAGATGATATTCATCATA
*
37751958 TCCTCCATTGTATCAGTTAG
66 TCCTCCATTATATCAGTTAG
* *
37751978 CCATCTTGATGTGCATTTCGGCTTCCTTTTCGTTAGCCAAATCCATTGAGATGATATTCATCATA
1 CCATCTTGATGTGCATTTCGGCTTCCTTTTCGTTAGCCAAATCCAGTAAGATGATATTCATCATA
37752043 TCCTCCATTATATCAGTTAG
66 TCCTCCATTATATCAGTTAG
37752063 C
1 C
37752064 AAAACTCGAG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (85 bp):
CCATCTTGATGTGCATTTCGGCTTCCTTTTCGTTAGCCAAATCCAGTAAGATGATATTCATCATA
TCCTCCATTATATCAGTTAG
Found at i:37760368 original size:16 final size:17
Alignment explanation
Indices: 37760347--37760379 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37760337 TAAATTAAGA
37760347 GGTTTAA-ATTTTTTAT
1 GGTTTAACATTTTTTAT
37760363 GGTTTAACTATTTTTTA
1 GGTTTAAC-ATTTTTTA
37760380 ATAATTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.03, G:0.12, T:0.61
Consensus pattern (17 bp):
GGTTTAACATTTTTTAT
Found at i:37762518 original size:23 final size:23
Alignment explanation
Indices: 37762477--37762538 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
37762467 TCAAATTAAA
*
37762477 CATTGT-TCTAAAAAAAACCATC
1 CATTGTATCTAATAAAAACCATC
*
37762499 CATTGTATCTAATAAGAACCATC
1 CATTGTATCTAATAAAAACCATC
*
37762522 CATTATATCTCAATAAA
1 CATTGTATCT-AATAAA
37762539 GCCATTCATC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 6 0.18
23 23 0.68
24 5 0.15
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.31
Consensus pattern (23 bp):
CATTGTATCTAATAAAAACCATC
Found at i:37766192 original size:33 final size:33
Alignment explanation
Indices: 37766150--37766218 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
37766140 ATATAATATG
* *
37766150 AAATAAAATAGAGTCAAAACCCAGAAAATAACA
1 AAATAAAATAGAGTCAAAACCCAAAAAATAAAA
37766183 AAATAAAATAGAGTCAAAACCCAAAAAATAAAA
1 AAATAAAATAGAGTCAAAACCCAAAAAATAAAA
37766216 AAA
1 AAA
37766219 ACCTCATCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.68, C:0.13, G:0.07, T:0.12
Consensus pattern (33 bp):
AAATAAAATAGAGTCAAAACCCAAAAAATAAAA
Found at i:37777136 original size:6 final size:7
Alignment explanation
Indices: 37777119--37777162 Score: 52
Period size: 7 Copynumber: 5.7 Consensus size: 7
37777109 ATTTAAAATT
37777119 TTTTTTC
1 TTTTTTC
37777126 TTTTTTC
1 TTTTTTC
37777133 TTTTCTTCC
1 TTTT-TT-C
37777142 TTTTTCTC
1 TTTTT-TC
37777150 ATTTTTTC
1 -TTTTTTC
37777158 TTTTT
1 TTTTT
37777163 CAAGTCACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
7 16 0.48
8 6 0.18
9 11 0.33
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTC
Found at i:37780806 original size:28 final size:27
Alignment explanation
Indices: 37780704--37780808 Score: 70
Period size: 28 Copynumber: 3.7 Consensus size: 27
37780694 TGGATACTTA
* *
37780704 GGGGTAAAATGGTAATTTTAGACTCTCG
1 GGGGTAAAATGGTAATTTTGGA-TTTCG
* * *
37780732 AGGGCAAAATGATAATTTTGGGAAAATTT-G
1 GGGGTAAAATGGTAATTTT-GG---ATTTCG
* *
37780762 GGGTTAAGAAT-GAAATTTTGGATGTTCG
1 GGGGTAA-AATGGTAATTTTGGAT-TTCG
37780790 GGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
37780809 TGGAAAGATT
Statistics
Matches: 57, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
26 2 0.04
27 5 0.09
28 30 0.53
29 3 0.05
30 11 0.19
31 5 0.09
32 1 0.02
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.33
Consensus pattern (27 bp):
GGGGTAAAATGGTAATTTTGGATTTCG
Found at i:37780966 original size:29 final size:29
Alignment explanation
Indices: 37780795--37781169 Score: 284
Period size: 30 Copynumber: 12.8 Consensus size: 29
37780785 GTTCGGGGGT
* * *
37780795 AAAATGGTAATTTTTGGAAAGATTGAGATCA
1 AAAATGG-AATTTTTGG-AAGTTTGAGGTTA
* **
37780826 AAAATGAAATTTTTGGATA-TTCAAAGG-TA
1 AAAATGGAATTTTTGGA-AGTT-TGAGGTTA
* *
37780855 AAACA-GTAATTTTT-GACAGTTTCGACGTTA
1 AAA-ATGGAATTTTTGGA-AGTTT-GAGGTTA
* * *
37780885 AAAATGGAGTTTTTAGACA-TTTG-GGGT-
1 AAAATGGAATTTTTGGA-AGTTTGAGGTTA
* *
37780912 AAAATGGTAATTTTTGTAAGTTTCGAGGTCA
1 AAAATGG-AATTTTTGGAAGTTT-GAGGTTA
* *
37780943 AAAGTGGAATTTTTGGAAGTTCGAGG--A
1 AAAATGGAATTTTTGGAAGTTTGAGGTTA
* * *
37780970 AAAATTGTAATTTTTAGAAGTTTCAGGGTTA
1 AAAA-TGGAATTTTTGGAAGTTTGA-GGTTA
* *
37781001 AAAATGGAATTTTTGGAAGTTTGGGGCTA
1 AAAATGGAATTTTTGGAAGTTTGAGGTTA
* *
37781030 AAAATGTAATTTTTGGAAGTTTTGGGGTTA
1 AAAATGGAATTTTTGGAAG-TTTGAGGTTA
*
37781060 AAAATGGAATTTTTGGAAGTTT-AGGGGTA
1 AAAATGGAATTTTTGGAAGTTTGA-GGTTA
* *
37781089 AAAATGTAATTTTTGGAAGTTTTAGGGTTA
1 AAAATGGAATTTTTGGAAGTTTGA-GGTTA
* * *
37781119 AAAATAGAATTTTTAGAAGTTTGAGGGTA
1 AAAATGGAATTTTTGGAAGTTTGAGGTTA
*
37781148 AAAATGTAATTTTTGGAAGTTT
1 AAAATGGAATTTTTGGAAGTTT
37781170 CAGGGTCTTG
Statistics
Matches: 276, Mismatches: 48, Indels: 42
0.75 0.13 0.11
Matches are distributed among these distances:
27 12 0.04
28 31 0.11
29 100 0.36
30 112 0.41
31 21 0.08
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.37
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAGTTTGAGGTTA
Found at i:37781051 original size:59 final size:58
Alignment explanation
Indices: 37780851--37781175 Score: 385
Period size: 59 Copynumber: 5.6 Consensus size: 58
37780841 GATATTCAAA
* * *
37780851 GGTAAAACA-GTAATTTTT-GACAGTTTC-GACGTTAAAAATGGAGTTTTTAGACA-TTTGG
1 GGTAAAA-ATGTAATTTTTGGA-AGTTTCAG-GGTTAAAAATGGAATTTTTGGA-AGTTTGG
* * * * *
37780909 GGT-AAAATGGTAATTTTTGTAAGTTTC-GAGGTCAAAAGTGGAATTTTTGGAAGTTCGA
1 GGTAAAAAT-GTAATTTTTGGAAGTTTCAG-GGTTAAAAATGGAATTTTTGGAAGTTTGG
*
37780967 GG-AAAAATTGTAATTTTTAGAAGTTTCAGGGTTAAAAATGGAATTTTTGGAAGTTTGG
1 GGTAAAAA-TGTAATTTTTGGAAGTTTCAGGGTTAAAAATGGAATTTTTGGAAGTTTGG
**
37781025 GGCTAAAAATGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGAATTTTTGGAAGTTTAGG
1 GG-TAAAAATGTAATTTTTGGAAGTTTCAGGGTTAAAAATGGAATTTTTGGAAGTTT-GG
* * *
37781085 GGTAAAAATGTAATTTTTGGAAGTTTTAGGGTTAAAAATAGAATTTTTAGAAGTTTGAG
1 GGTAAAAATGTAATTTTTGGAAGTTTCAGGGTTAAAAATGGAATTTTTGGAAGTTTG-G
37781144 GGTAAAAATGTAATTTTTGGAAGTTTCAGGGT
1 GGTAAAAATGTAATTTTTGGAAGTTTCAGGGT
37781176 CTTGTAGGGC
Statistics
Matches: 235, Mismatches: 21, Indels: 21
0.85 0.08 0.08
Matches are distributed among these distances:
56 1 0.00
57 4 0.02
58 90 0.38
59 131 0.56
60 9 0.04
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.38
Consensus pattern (58 bp):
GGTAAAAATGTAATTTTTGGAAGTTTCAGGGTTAAAAATGGAATTTTTGGAAGTTTGG
Found at i:37781174 original size:29 final size:29
Alignment explanation
Indices: 37780908--37781175 Score: 273
Period size: 29 Copynumber: 9.1 Consensus size: 29
37780898 TAGACATTTG
*
37780908 GGGT-AAAATGGTAATTTTTGTAAGTTTC-
1 GGGTAAAAAT-GTAATTTTTGGAAGTTTCA
* *
37780936 GAGGTCAAAAGTGGAATTTTTGGAAG-TTC-
1 G-GGT-AAAAATGTAATTTTTGGAAGTTTCA
*
37780965 GAGG-AAAAATTGTAATTTTTAGAAGTTTCA
1 G-GGTAAAAA-TGTAATTTTTGGAAGTTTCA
* *
37780995 GGGTTAAAAATGGAATTTTTGGAAGTTT-G
1 GGG-TAAAAATGTAATTTTTGGAAGTTTCA
**
37781024 GGGCTAAAAATGTAATTTTTGGAAGTTTTG
1 GGG-TAAAAATGTAATTTTTGGAAGTTTCA
*
37781054 GGGTTAAAAATGGAATTTTTGGAAGTTT-A
1 GGG-TAAAAATGTAATTTTTGGAAGTTTCA
*
37781083 GGGGTAAAAATGTAATTTTTGGAAGTTTTA
1 -GGGTAAAAATGTAATTTTTGGAAGTTTCA
* *
37781113 GGGTTAAAAATAG-AATTTTTAGAAGTTTGA
1 GGG-TAAAAAT-GTAATTTTTGGAAGTTTCA
37781143 GGGTAAAAATGTAATTTTTGGAAGTTTCA
1 GGGTAAAAATGTAATTTTTGGAAGTTTCA
37781172 GGGT
1 GGGT
37781176 CTTGTAGGGC
Statistics
Matches: 207, Mismatches: 19, Indels: 27
0.82 0.08 0.11
Matches are distributed among these distances:
27 4 0.02
28 15 0.07
29 93 0.45
30 85 0.41
31 10 0.05
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTTGGAAGTTTCA
Found at i:37783426 original size:15 final size:16
Alignment explanation
Indices: 37783394--37783426 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
37783384 TTGACTTTTC
*
37783394 TTCCTTTTCTTGCTTT
1 TTCCTTTTCTTACTTT
37783410 TTCCTTTT-TTACTTT
1 TTCCTTTTCTTACTTT
37783425 TT
1 TT
37783427 TTATTGGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.73
Consensus pattern (16 bp):
TTCCTTTTCTTACTTT
Found at i:37783427 original size:16 final size:17
Alignment explanation
Indices: 37783387--37783427 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
37783377 TTCATCTTTG
37783387 ACTTTTCTTCCTTTTCTT
1 ACTTTT-TTCCTTTTCTT
*
37783405 GC-TTTTTCCTTTT-TT
1 ACTTTTTTCCTTTTCTT
37783420 ACTTTTTT
1 ACTTTTTT
37783428 TATTGGGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 3 0.15
16 13 0.65
17 3 0.15
18 1 0.05
ACGTcount: A:0.05, C:0.22, G:0.02, T:0.71
Consensus pattern (17 bp):
ACTTTTTTCCTTTTCTT
Found at i:37788498 original size:118 final size:118
Alignment explanation
Indices: 37788376--37788603 Score: 298
Period size: 118 Copynumber: 1.9 Consensus size: 118
37788366 AAGATAAGGA
*
37788376 TTAAAAACAAAATTTTTGGACA-TTCGAGGGTAAA-ATGGTAATTTTTACAAGTTTCAGGGTCAA
1 TTAAAAACAAAATTTTTGGA-AGTTCGAGGGTAAAGAT-GTAATTTTTACAAGTTTCAAGGTCAA
* *
37788439 AAGCAGAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGCTTCGATG
64 AAACAGAATTTTTAGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGCTTCGATG
*** * ** * *
37788494 TTAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAGATGTGATTTTTGGAAGTTTTAAGGTTAAAA
1 TTAAAAACAAAATTTTTGGAAGTTCGAGGGTAAAGATGTAATTTTTACAAGTTTCAAGGTCAAAA
** *
37788559 ATGGAATTTTTAGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAG
66 ACAGAATTTTTAGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAG
37788604 TTTTGGGGTC
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
117 1 0.01
118 91 0.97
119 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.35
Consensus pattern (118 bp):
TTAAAAACAAAATTTTTGGAAGTTCGAGGGTAAAGATGTAATTTTTACAAGTTTCAAGGTCAAAA
ACAGAATTTTTAGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGCTTCGATG
Found at i:37788604 original size:59 final size:59
Alignment explanation
Indices: 37788318--37788607 Score: 270
Period size: 59 Copynumber: 4.9 Consensus size: 59
37788308 AAATTTGGGA
* * * *
37788318 TTAAAAAT-GAAATTTTGGACA-TTCGGGGGT-AAAATGGTAATTTTTAGAAAG--ATAAGG
1 TTAAAAATGGAATTTTTGGA-AGTTCGAGGGTAAAAAT-GTAATTTTT-GGAAGTTTTAAGG
*** ** * *
37788375 ATTAAAAACAAAATTTTTGGACA-TTCGAGGGT-AAAATGGTAATTTTTACAAGTTTCAGGG
1 -TTAAAAATGGAATTTTTGGA-AGTTCGAGGGTAAAAAT-GTAATTTTTGGAAGTTTTAAGG
* *** * ** *
37788435 TCAAAAGCAGAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGCTTCGATG
1 TTAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGTTTTAAGG
* *
37788494 TTAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAGATGTGATTTTTGGAAGTTTTAAGG
1 TTAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGTTTTAAGG
* *
37788553 TTAAAAATGGAATTTTTAGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAGTTTT
1 TTAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGTTTT
37788608 GGGGTCTTGT
Statistics
Matches: 195, Mismatches: 32, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
58 11 0.06
59 176 0.90
60 8 0.04
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.35
Consensus pattern (59 bp):
TTAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGGAAGTTTTAAGG
Found at i:37788612 original size:29 final size:29
Alignment explanation
Indices: 37788386--37788605 Score: 216
Period size: 29 Copynumber: 7.5 Consensus size: 29
37788376 TTAAAAACAA
37788386 AATTTTTGGACA-TTCGAGGGT-AAAATGGT
1 AATTTTTGGA-AGTTCGAGGGTAAAAAT-GT
**
37788415 AATTTTTACAAGTTTC-AGGGTCAAAAGCA-G-
1 AATTTTTGGAAG-TTCGAGGGT-AAAA--ATGT
37788445 AATTTTTGGAAGTTCGAGGGTAAAAATGT
1 AATTTTTGGAAGTTCGAGGGTAAAAATGT
* * *
37788474 AATTTTTGGAAGCTTCGATGTTAAAAATGG
1 AATTTTTGGAAG-TTCGAGGGTAAAAATGT
*
37788504 AATTTTTGGAAGTTCGAGGGTAAAGATGT
1 AATTTTTGGAAGTTCGAGGGTAAAAATGT
* ** * *
37788533 GATTTTTGGAAGTTTTAAGGTTAAAAATGG
1 AATTTTTGGAAG-TTCGAGGGTAAAAATGT
* *
37788563 AATTTTTAGAAGTTTGAGGGTAAAAATGT
1 AATTTTTGGAAGTTCGAGGGTAAAAATGT
37788592 AATTTTTGGAAGTT
1 AATTTTTGGAAGTT
37788606 TTGGGGTCTT
Statistics
Matches: 157, Mismatches: 23, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
27 1 0.01
28 2 0.01
29 83 0.53
30 66 0.42
31 4 0.03
33 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (29 bp):
AATTTTTGGAAGTTCGAGGGTAAAAATGT
Found at i:37790309 original size:17 final size:17
Alignment explanation
Indices: 37790284--37790374 Score: 92
Period size: 17 Copynumber: 5.3 Consensus size: 17
37790274 TTTAATTTTC
*
37790284 AATTCAAAATAAATTCA
1 AATTTAAAATAAATTCA
*
37790301 AATTTAAAATAAATTTAA
1 AATTTAAAATAAA-TTCA
*** * *
37790319 AACCCAAAATGATTTCA
1 AATTTAAAATAAATTCA
*
37790336 AATTTAAAATAAATTCT
1 AATTTAAAATAAATTCA
*
37790353 AATTTAAAATAAATTAA
1 AATTTAAAATAAATTCA
37790370 AATTT
1 AATTT
37790375 TAAGTTAAAA
Statistics
Matches: 57, Mismatches: 16, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
17 46 0.81
18 11 0.19
ACGTcount: A:0.56, C:0.08, G:0.01, T:0.35
Consensus pattern (17 bp):
AATTTAAAATAAATTCA
Found at i:37790316 original size:35 final size:34
Alignment explanation
Indices: 37790277--37790374 Score: 106
Period size: 35 Copynumber: 2.8 Consensus size: 34
37790267 TAATAAATTT
37790277 AATTTTCAATTCAAAATAAATTCAAATTTAAAATA
1 AATTTT-AATTCAAAATAAATTCAAATTTAAAATA
* ** * *
37790312 AATTTAAAACCCAAAATGATTTCAAATTTAAAATA
1 AATTT-TAATTCAAAATAAATTCAAATTTAAAATA
* * *
37790347 AATTCTAATTTAAAATAAATTAAAATTT
1 AATTTTAATTCAAAATAAATTCAAATTT
37790375 TAAGTTAAAA
Statistics
Matches: 49, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
34 16 0.33
35 33 0.67
ACGTcount: A:0.54, C:0.08, G:0.01, T:0.37
Consensus pattern (34 bp):
AATTTTAATTCAAAATAAATTCAAATTTAAAATA
Found at i:37790382 original size:23 final size:23
Alignment explanation
Indices: 37790346--37790389 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
37790336 AATTTAAAAT
*
37790346 AAATTCTAATTTAAAATAAATTA
1 AAATTCTAAGTTAAAATAAATTA
*
37790369 AAATTTTAAGTTAAAATAAAT
1 AAATTCTAAGTTAAAATAAAT
37790390 CTGCATTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
AAATTCTAAGTTAAAATAAATTA
Found at i:37792413 original size:13 final size:13
Alignment explanation
Indices: 37792395--37792420 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37792385 CACTTTTCCG
37792395 TAAAATCAGATTT
1 TAAAATCAGATTT
37792408 TAAAATCAGATTT
1 TAAAATCAGATTT
37792421 AGTGTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
TAAAATCAGATTT
Found at i:37793168 original size:56 final size:56
Alignment explanation
Indices: 37793077--37793204 Score: 184
Period size: 56 Copynumber: 2.3 Consensus size: 56
37793067 CCCACGTCCA
* * *
37793077 TGTGCTAGACCGTGTGTACATATTGTTTAGCGATACACGGGCCGGGCACATGGGCG
1 TGTGCTAGACCGTGTGTACATACTGTTTAGCGATACACAGGCCGGGCACACGGGCG
* *
37793133 TGTGCTAGACCGTGTGTACATACTGTTTAGTGATACACAGGTCGGGCACACGGGCG
1 TGTGCTAGACCGTGTGTACATACTGTTTAGCGATACACAGGCCGGGCACACGGGCG
* * *
37793189 TGGGCCAGATCGTGTG
1 TGTGCTAGACCGTGTG
37793205 AATATATTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.20, C:0.21, G:0.34, T:0.25
Consensus pattern (56 bp):
TGTGCTAGACCGTGTGTACATACTGTTTAGCGATACACAGGCCGGGCACACGGGCG
Found at i:37793566 original size:40 final size:40
Alignment explanation
Indices: 37793522--37793599 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
37793512 CACTTGAGTG
*
37793522 TATTATCACTAAACTGGAAGTGACAGTGTGAACATTGCAA
1 TATTATCACTAAACTGGAAGTGACAGTGTAAACATTGCAA
* ** * *
37793562 TATTATTACTGGACTGGCAGTGACATTGTAAACATTGC
1 TATTATCACTAAACTGGAAGTGACAGTGTAAACATTGC
37793600 GCCTTTGTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (40 bp):
TATTATCACTAAACTGGAAGTGACAGTGTAAACATTGCAA
Found at i:37807608 original size:18 final size:18
Alignment explanation
Indices: 37807585--37807628 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
37807575 TCTTTATGAT
37807585 TTCTTCAGGATCTTCCTC
1 TTCTTCAGGATCTTCCTC
* *
37807603 TTCTTCAAGATCTTCTTC
1 TTCTTCAGGATCTTCCTC
*
37807621 TTCCTCAG
1 TTCTTCAG
37807629 CTTGCTGTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.14, C:0.32, G:0.09, T:0.45
Consensus pattern (18 bp):
TTCTTCAGGATCTTCCTC
Found at i:37808520 original size:25 final size:26
Alignment explanation
Indices: 37808472--37808521 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
37808462 GTCTAAACTA
* *
37808472 TTAACAATTTAAAATAAATTAAAAAG
1 TTAACAAATTAAAATAAATCAAAAAG
37808498 TTAACAAATT-AAATAAATCAAAAA
1 TTAACAAATTAAAATAAATCAAAAA
37808522 TTAGAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (26 bp):
TTAACAAATTAAAATAAATCAAAAAG
Found at i:37824032 original size:21 final size:21
Alignment explanation
Indices: 37823985--37824033 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
37823975 TCAAGAGGAA
* *
37823985 CTTGTTGTAAAGGAGGAAGTT
1 CTTGTTGGAAAGGAGGAAGTC
** *
37824006 GATGTTGGAGAGGAGGAAGTC
1 CTTGTTGGAAAGGAGGAAGTC
37824027 CTTGTTG
1 CTTGTTG
37824034 AAGATGTGAA
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.06, G:0.39, T:0.31
Consensus pattern (21 bp):
CTTGTTGGAAAGGAGGAAGTC
Found at i:37826526 original size:41 final size:40
Alignment explanation
Indices: 37826430--37826571 Score: 176
Period size: 41 Copynumber: 3.4 Consensus size: 40
37826420 AACTCGATAT
* **
37826430 TTAAATGGAAGACTCATGTCTCGGGTTGACCATGAGAATTTATA
1 TTAAA-GGAAGACTCATGTCTCGGGATGAGAAT-A-AA-TTATA
*
37826474 TTAAGGGAAGACTCATGTCTCGGGATGAGAATAATATTATA
1 TTAAAGGAAGACTCATGTCTCGGGATGAGAATAA-ATTATA
*
37826515 TTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATTATA
1 TTAAAGGAAGACTCATGTCTCGGGATGAGAAT-AAATTATA
*
37826556 TTAAAGGAAGATTCAT
1 TTAAAGGAAGACTCAT
37826572 ATCGCAAAAT
Statistics
Matches: 89, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
41 58 0.65
42 3 0.03
43 24 0.27
44 4 0.04
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.30
Consensus pattern (40 bp):
TTAAAGGAAGACTCATGTCTCGGGATGAGAATAAATTATA
Found at i:37826584 original size:41 final size:41
Alignment explanation
Indices: 37826469--37826584 Score: 106
Period size: 41 Copynumber: 2.8 Consensus size: 41
37826459 CCATGAGAAT
* * * *** *
37826469 TTATATTAAGGGAAGACTCATGTCTCGGGATGAGAATAATA
1 TTATATTAAAGGAAGACTCATATCGCAAAATGAGAATAAGA
* * *** *
37826510 TTATATTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGA
1 TTATATTAAAGGAAGACTCATATCGCAAAATGAGAATAAGA
*
37826551 TTATATTAAAGGAAGATTCATATCGCAAAATGAG
1 TTATATTAAAGGAAGACTCATATCGCAAAATGAG
37826585 CGTGAGGTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (41 bp):
TTATATTAAAGGAAGACTCATATCGCAAAATGAGAATAAGA
Found at i:37837112 original size:13 final size:13
Alignment explanation
Indices: 37837090--37837123 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
37837080 TACATATTTT
37837090 TTTTTCTTTTCCTC
1 TTTTT-TTTTCCTC
*
37837104 TTTTTTTTTTCTC
1 TTTTTTTTTCCTC
37837117 TTTTTTT
1 TTTTTTT
37837124 ATGTGACTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTTTTTCCTC
Found at i:37837814 original size:12 final size:13
Alignment explanation
Indices: 37837782--37837814 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
37837772 GATATGCATG
37837782 AAAACTAAAATTA
1 AAAACTAAAATTA
*
37837795 AGAACTAAAA-TA
1 AAAACTAAAATTA
37837807 AAAACTAA
1 AAAACTAA
37837815 CTCAATTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.70, C:0.09, G:0.03, T:0.18
Consensus pattern (13 bp):
AAAACTAAAATTA
Found at i:37849353 original size:24 final size:23
Alignment explanation
Indices: 37849289--37849364 Score: 62
Period size: 24 Copynumber: 3.1 Consensus size: 23
37849279 TTTCAGATTT
**
37849289 TTAGCTCATACGAGCCCAAACAAAA
1 TTAGCTC-TACGAGCCCAAA-AAGG
* *
37849314 TTAGCTCTAGCAAGCCCAGAAAGG
1 TTAGCTCTA-CGAGCCCAAAAAGG
* *
37849338 TTAGCTCTTACGAGCCCATAATGG
1 TTAGCTC-TACGAGCCCAAAAAGG
37849362 TTA
1 TTA
37849365 AATAGTATAC
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
24 25 0.60
25 17 0.40
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.22
Consensus pattern (23 bp):
TTAGCTCTACGAGCCCAAAAAGG
Found at i:37855104 original size:334 final size:334
Alignment explanation
Indices: 37854495--37855169 Score: 1314
Period size: 334 Copynumber: 2.0 Consensus size: 334
37854485 TCGAGGCCAG
* *
37854495 AGTTGATATTCCATAAAGTAGGTATTGTCACGACATTGAGGTGGCATGTCGCAATGTCGAGGCCA
1 AGTTGATATTCCATAAAGTAGGTATTGTCACGACATCGAGGTGGCATGCCGCAATGTCGAGGCCA
37854560 GTGTCCTTATTTTTCCTGTGTTTGGCGATCGCGACATTGAGACGAATTTTCCTCTAGTTTCGAAT
66 GTGTCCTTATTTTTCCTGTGTTTGGCGATCGCGACATTGAGACGAATTTTCCTCTAGTTTCGAAT
*
37854625 CTAAACTGCTATCTATTCCTTGGGTTTTTCAGATGTTCAAAGCTAACATTGGTTCCTTACTCCAT
131 CTAAACTGCTATCTATTCCTTGGATTTTTCAGATGTTCAAAGCTAACATTGGTTCCTTACTCCAT
37854690 ATTGTCATATAGCATAAAGGTTGTTCATCAATAAGTACATCTGTAGTTCCCCTATAAGAGGGTTT
196 ATTGTCATATAGCATAAAGGTTGTTCATCAATAAGTACATCTGTAGTTCCCCTATAAGAGGGTTT
37854755 TACTCTCTGCGCATTGACTAAAAAAGACTGGCCATTCTTACCTAACAACTCAATTACTCCATATG
261 TACTCTCTGCGCATTGACTAAAAAAGACTGGCCATTCTTACCTAACAACTCAATTACTCCATATG
37854820 GTTTTACTT
326 GTTTTACTT
37854829 AGTTGATATTCCATAAAGTAGGTATTGTCACGACATCGAGGTGGCATGCCGCAATGTCGAGGCCA
1 AGTTGATATTCCATAAAGTAGGTATTGTCACGACATCGAGGTGGCATGCCGCAATGTCGAGGCCA
*
37854894 GTGTCCTTGTTTTTCCTGTGTTTGGCGATCGCGACATTGAGACGAATTTTCCTCTAGTTTCGAAT
66 GTGTCCTTATTTTTCCTGTGTTTGGCGATCGCGACATTGAGACGAATTTTCCTCTAGTTTCGAAT
37854959 CTAAACTGCTATCTATTCCTTGGATTTTTCAGATGTTCAAAGCTAACATTGGTTCCTTACTCCAT
131 CTAAACTGCTATCTATTCCTTGGATTTTTCAGATGTTCAAAGCTAACATTGGTTCCTTACTCCAT
37855024 ATTGTCATATAGCATAAAGGTTGTTCATCAATAAGTACATCTGTAGTTCCCCTATAAGAGGGTTT
196 ATTGTCATATAGCATAAAGGTTGTTCATCAATAAGTACATCTGTAGTTCCCCTATAAGAGGGTTT
37855089 TACTCTCTGCGCATTGACTAAAAAAGACTGGCCATTCTTACCTAACAACTCAATTACTCCATATG
261 TACTCTCTGCGCATTGACTAAAAAAGACTGGCCATTCTTACCTAACAACTCAATTACTCCATATG
37855154 GTTTTACTT
326 GTTTTACTT
37855163 AGTTGAT
1 AGTTGAT
37855170 GGTATATGGT
Statistics
Matches: 337, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
334 337 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (334 bp):
AGTTGATATTCCATAAAGTAGGTATTGTCACGACATCGAGGTGGCATGCCGCAATGTCGAGGCCA
GTGTCCTTATTTTTCCTGTGTTTGGCGATCGCGACATTGAGACGAATTTTCCTCTAGTTTCGAAT
CTAAACTGCTATCTATTCCTTGGATTTTTCAGATGTTCAAAGCTAACATTGGTTCCTTACTCCAT
ATTGTCATATAGCATAAAGGTTGTTCATCAATAAGTACATCTGTAGTTCCCCTATAAGAGGGTTT
TACTCTCTGCGCATTGACTAAAAAAGACTGGCCATTCTTACCTAACAACTCAATTACTCCATATG
GTTTTACTT
Found at i:37855872 original size:14 final size:15
Alignment explanation
Indices: 37855850--37855888 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
37855840 TCCCCAAATG
*
37855850 TCAAATATTTTTACC
1 TCAAATATTTCTACC
37855865 TC-AATATTTCTACC
1 TCAAATATTTCTACC
37855879 TCAAATATTT
1 TCAAATATTT
37855889 GGAGACATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.46
Consensus pattern (15 bp):
TCAAATATTTCTACC
Found at i:37857731 original size:17 final size:19
Alignment explanation
Indices: 37857709--37857745 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
37857699 GTAGAGAGTC
*
37857709 TCATACCTT-ATTTT-TTT
1 TCATACATTGATTTTCTTT
37857726 TCATACATTGATTTTCTTT
1 TCATACATTGATTTTCTTT
37857745 T
1 T
37857746 ACTTTGAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.19, C:0.16, G:0.03, T:0.62
Consensus pattern (19 bp):
TCATACATTGATTTTCTTT
Found at i:37858081 original size:17 final size:17
Alignment explanation
Indices: 37858059--37858114 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 17
37858049 CACCATTTTC
37858059 AATTTATTTTAAAATTA
1 AATTTATTTTAAAATTA
* *
37858076 AATTTATTCTAAATTTA
1 AATTTATTTTAAAATTA
*
37858093 AATTTATTTT-AAATTT
1 AATTTATTTTAAAATTA
37858109 AATTTA
1 AATTTA
37858115 AGTTTGAATC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 10 0.29
17 24 0.71
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTATTTTAAAATTA
Found at i:37858105 original size:28 final size:27
Alignment explanation
Indices: 37858085--37858137 Score: 61
Period size: 28 Copynumber: 1.9 Consensus size: 27
37858075 AAATTTATTC
* *
37858085 TAAATTTAAATTTATTTTAAATTTAATT
1 TAAATTTAAATCTAGTTTAAATTT-ATT
* *
37858113 TAAGTTTGAATCTAGTTTAAATTTA
1 TAAATTTAAATCTAGTTTAAATTTA
37858138 ATGTCCAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 1 0.05
28 20 0.95
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.53
Consensus pattern (27 bp):
TAAATTTAAATCTAGTTTAAATTTATT
Found at i:37860118 original size:29 final size:29
Alignment explanation
Indices: 37860083--37860336 Score: 218
Period size: 29 Copynumber: 8.8 Consensus size: 29
37860073 CCCTAAATTA
37860083 TCCAAAAATTACATTTTTACCCTTAAACT
1 TCCAAAAATTACATTTTTACCCTTAAACT
* *
37860112 TCTAAAAATTACA-TTTTA-CCTCAAAACT
1 TCCAAAAATTACATTTTTACCCT-TAAACT
37860140 TCCAAAAATTACATTTTTACCCTTAAACT
1 TCCAAAAATTACATTTTTACCCTTAAACT
*** *
37860169 TTTGAAAATTACATTTTTGA-CCTCGAAACT
1 TCCAAAAATTACATTTTT-ACCCT-TAAACT
* *
37860199 TCCAAAAATTACA-TTTTACCCCTAAAAT
1 TCCAAAAATTACATTTTTACCCTTAAACT
* * * * *
37860227 TCTAAAAATTCCATTATTGACCC-CAAATT
1 TCCAAAAATTACATT-TTTACCCTTAAACT
* *
37860256 TCCAAAAATTCCATTTTTGACCC-TAAAAT
1 TCCAAAAATTACATTTTT-ACCCTTAAACT
* * * *
37860285 TGCAAAATTTCCATTTTTAACCCTGAAACT
1 TCCAAAAATTACATTTTT-ACCCTTAAACT
37860315 TCC-AAAATTACCA-TTTTACCCT
1 TCCAAAAATTA-CATTTTTACCCT
37860337 CGGATGTCCA
Statistics
Matches: 183, Mismatches: 31, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
27 3 0.02
28 45 0.25
29 102 0.56
30 33 0.18
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (29 bp):
TCCAAAAATTACATTTTTACCCTTAAACT
Found at i:37860177 original size:57 final size:58
Alignment explanation
Indices: 37860083--37860279 Score: 265
Period size: 57 Copynumber: 3.4 Consensus size: 58
37860073 CCCTAAATTA
37860083 TCCAAAAATTACATTTTTACCCTTAAACTTCTAAAAATTACATTTT-ACCTCAAAACT
1 TCCAAAAATTACATTTTTACCCTTAAACTTCTAAAAATTACATTTTGACCTCAAAACT
* * *
37860140 TCCAAAAATTACATTTTTACCCTTAAACTTTTGAAAATTACATTTTTGACCTCGAAACT
1 TCCAAAAATTACATTTTTACCCTTAAACTTCTAAAAATTACA-TTTTGACCTCAAAACT
* * * * *
37860199 TCCAAAAATTACA-TTTTACCCCTAAAATTCTAAAAATTCCATTATTGACC-CCAAATT
1 TCCAAAAATTACATTTTTACCCTTAAACTTCTAAAAATTACATT-TTGACCTCAAAACT
*
37860256 TCCAAAAATTCCATTTTTGACCCT
1 TCCAAAAATTACATTTTT-ACCCT
37860280 AAAATTGCAA
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
57 59 0.48
58 37 0.30
59 27 0.22
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.37
Consensus pattern (58 bp):
TCCAAAAATTACATTTTTACCCTTAAACTTCTAAAAATTACATTTTGACCTCAAAACT
Found at i:37860264 original size:87 final size:87
Alignment explanation
Indices: 37860073--37860337 Score: 251
Period size: 87 Copynumber: 3.1 Consensus size: 87
37860063 CATTAAAGGT
* * *
37860073 CCCT-AAATTATCCAAAAATTACATTTTT-ACCCTTAAACTTCTAAAAATTACATTTTACCTCAA
1 CCCTCAAATT-TCCAAAAATTACATTTTTGACCCTGAAACTTCCAAAAATTACATTTTACCCCAA
*
37860136 AACTTCCAAAAATTACATTTTTA
65 AACTTCCAAAAATTACATTTTGA
* **
37860159 CCCTTAAACTTT-TGAAAATTACATTTTTGA-CCTCGAAACTTCCAAAAATTACATTTTACCCCT
1 CCCTCAAA-TTTCCAAAAATTACATTTTTGACCCT-GAAACTTCCAAAAATTACATTTTACCCC-
* *
37860222 AAAA-TTCTAAAAATTCCATTATTGA
63 AAAACTTCCAAAAATTACATT-TTGA
* * * * * **
37860247 CCC-CAAATTTCCAAAAATTCCATTTTTGACCCT-AAAATTGCAAAATTTCCATTTTTAACCCTG
1 CCCTCAAATTTCCAAAAATTACATTTTTGACCCTGAAACTTCCAAAAATTACA-TTTT-ACCCCA
37860310 AAACTTCC-AAAATTACCATTTT-A
64 AAACTTCCAAAAATTA-CATTTTGA
37860333 CCCTC
1 CCCTC
37860338 GGATGTCCAA
Statistics
Matches: 146, Mismatches: 20, Indels: 25
0.76 0.10 0.13
Matches are distributed among these distances:
86 42 0.29
87 78 0.53
88 26 0.18
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (87 bp):
CCCTCAAATTTCCAAAAATTACATTTTTGACCCTGAAACTTCCAAAAATTACATTTTACCCCAAA
ACTTCCAAAAATTACATTTTGA
Found at i:37860292 original size:57 final size:58
Alignment explanation
Indices: 37860083--37860336 Score: 263
Period size: 58 Copynumber: 4.4 Consensus size: 58
37860073 CCCTAAATTA
* *
37860083 TCCAAAAATTACATTTTTACCCTTAAACTTCTAAAAATTACA-TTTT-ACCTCAAAACT
1 TCCAAAAATTACATTTTTACCCTTAAAATTC-AAAAATTACATTTTTGACCTCGAAACT
* **
37860140 TCCAAAAATTACATTTTTACCCTTAAACTTTTGAAAATTACATTTTTGACCTCGAAACT
1 TCCAAAAATTACATTTTTACCCTTAAA-ATTCAAAAATTACATTTTTGACCTCGAAACT
* * * * *
37860199 TCCAAAAATTACA-TTTTACCCCTAAAATTCTAAAAATTCCATTATTGACC-CCAAATT
1 TCCAAAAATTACATTTTTACCCTTAAAATTC-AAAAATTACATTTTTGACCTCGAAACT
* * * *
37860256 TCCAAAAATTCCATTTTTGACCC-TAAAATTGCAAAATTTCCATTTTTAACC-CTGAAACT
1 TCCAAAAATTACATTTTT-ACCCTTAAAATT-CAAAAATTACATTTTTGACCTC-GAAACT
37860315 TCC-AAAATTACCA-TTTTACCCT
1 TCCAAAAATTA-CATTTTTACCCT
37860337 CGGATGTCCA
Statistics
Matches: 168, Mismatches: 19, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
57 59 0.35
58 72 0.43
59 37 0.22
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (58 bp):
TCCAAAAATTACATTTTTACCCTTAAAATTCAAAAATTACATTTTTGACCTCGAAACT
Found at i:37860300 original size:116 final size:114
Alignment explanation
Indices: 37860083--37860335 Score: 309
Period size: 116 Copynumber: 2.2 Consensus size: 114
37860073 CCCTAAATTA
* *
37860083 TCCAAAAATTACATTTTTACCCTTAAACTTCTAAAAATTACATTTTACCTCAAAACTTCCAAAAA
1 TCCAAAAATTACA-TTTTACCCCTAAAATTCTAAAAATTACATTTTACCTCAAAACTTCCAAAAA
* *
37860148 TTACATTTTTACCCTTAAACTTTTGAAAATTACATTTTTGA-CCTCGAAACT
65 TTACATTTTTACCCTTAAAC-ATTGAAAATTACATTTTTAACCCT-GAAACT
* * *
37860199 TCCAAAAATTACATTTTACCCCTAAAATTCTAAAAATTCCATTATTGACC-CCAAATTTCCAAAA
1 TCCAAAAATTACATTTTACCCCTAAAATTCTAAAAATTACATT-TT-ACCTCAAAACTTCCAAAA
* *
37860263 ATTCCATTTTTGACCC-TAAA-ATTGCAAAATTTCCATTTTTAACCCTGAAACT
64 ATTACATTTTT-ACCCTTAAACATTG-AAAA-TTACATTTTTAACCCTGAAACT
37860315 TCC-AAAATTACCATTTTACCC
1 TCCAAAAATTA-CATTTTACCC
37860336 TCGGATGTCC
Statistics
Matches: 121, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
114 3 0.02
115 38 0.31
116 70 0.58
117 10 0.08
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.36
Consensus pattern (114 bp):
TCCAAAAATTACATTTTACCCCTAAAATTCTAAAAATTACATTTTACCTCAAAACTTCCAAAAAT
TACATTTTTACCCTTAAACATTGAAAATTACATTTTTAACCCTGAAACT
Found at i:37865376 original size:11 final size:11
Alignment explanation
Indices: 37865360--37865415 Score: 69
Period size: 11 Copynumber: 4.9 Consensus size: 11
37865350 TTCAATGAAT
37865360 AAAAGAAAAGA
1 AAAAGAAAAGA
*
37865371 AAAAGAAAAAA
1 AAAAGAAAAGA
37865382 AAGAGAGAAAAGA
1 AA-A-AGAAAAGA
37865395 AAAA-AGAAAGA
1 AAAAGA-AAAGA
37865406 AAAAGAAAAG
1 AAAAGAAAAG
37865416 GAGGGGTCGA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
10 1 0.03
11 26 0.67
12 3 0.08
13 9 0.23
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAGA
Found at i:37865395 original size:24 final size:26
Alignment explanation
Indices: 37865363--37865411 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
37865353 AATGAATAAA
37865363 AGAAAAG-AAAAAGAAA-AAAAAGAG
1 AGAAAAGAAAAAAGAAAGAAAAAGAG
37865387 AGAAAAGAAAAAAGAAAGAAAAAGA
1 AGAAAAGAAAAAAGAAAGAAAAAGA
37865412 AAAGGAGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 7 0.30
25 9 0.39
26 7 0.30
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (26 bp):
AGAAAAGAAAAAAGAAAGAAAAAGAG
Found at i:37865397 original size:16 final size:17
Alignment explanation
Indices: 37865360--37865414 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 17
37865350 TTCAATGAAT
37865360 AAAAGAAAAGAAAAAGAA
1 AAAAG-AAAGAAAAAGAA
37865378 AAAA-AAGAGAGAAAAGAA
1 AAAAGAA-AGA-AAAAGAA
37865396 AAAAGAAAGAAAAAGAA
1 AAAAGAAAGAAAAAGAA
37865413 AA
1 AA
37865415 GGAGGGGTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
16 2 0.06
17 12 0.35
18 18 0.53
19 2 0.06
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAGAAAGAAAAAGAA
Found at i:37866746 original size:49 final size:50
Alignment explanation
Indices: 37866693--37866789 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
37866683 TGTACCTCAA
*
37866693 AAGACA-AGAAGGGAAAGATTTAAG-CCGCAACGGTGAATCCAGTACCATG
1 AAGACATA-AAGGGAAAGATCTAAGACCGCAACGGTGAATCCAGTACCATG
*
37866742 AAGACATAAAGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCA
1 AAGACATAAAGGGAAAGATCTAAGACCGCAACGGTGAATCCAGTACCA
37866790 CAAAGATACA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
49 21 0.48
50 23 0.52
ACGTcount: A:0.41, C:0.20, G:0.26, T:0.13
Consensus pattern (50 bp):
AAGACATAAAGGGAAAGATCTAAGACCGCAACGGTGAATCCAGTACCATG
Found at i:37866850 original size:82 final size:81
Alignment explanation
Indices: 37866733--37866884 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
37866723 CGGTGAATCC
* *
37866733 AGTACCATGAAGACATAAAGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCACAAAGATA
1 AGTACCATAAAGACATAAAGGGAAAGAGCTAAGACCGCAACGGTGGATCCAGTACCACAAAGATA
37866798 CAGAAACGACAGATCT
66 CAGAAACGACAGATCT
* * * **
37866814 AGTACCGTAAAGATATAGAAGGGAAAGAGCTAAGACCGCAATGGTGGATCCAGTACTGCAAAGAT
1 AGTACCATAAAGACATA-AAGGGAAAGAGCTAAGACCGCAACGGTGGATCCAGTACCACAAAGAT
37866879 ACAGAA
65 ACAGAA
37866885 GGGAAAGATA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
81 14 0.22
82 49 0.78
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.14
Consensus pattern (81 bp):
AGTACCATAAAGACATAAAGGGAAAGAGCTAAGACCGCAACGGTGGATCCAGTACCACAAAGATA
CAGAAACGACAGATCT
Found at i:37866976 original size:48 final size:51
Alignment explanation
Indices: 37866823--37866977 Score: 181
Period size: 51 Copynumber: 3.1 Consensus size: 51
37866813 TAGTACCGTA
* * * ** *
37866823 AAGATATAGAAGGGAAAGAGCTAAGACCGCAATGGTGGATCCAGTACTGCA
1 AAGATACAGAAGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCACG
* * * * *
37866874 AAGATACAGAAGGGAAAGATATAAGACCACAACGGCGGATCCAGTTCCATG
1 AAGATACAGAAGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCACG
*
37866925 AAGATACA-AA-GGAAAGATCTAAG-CCGCAACGGTGGATCCAATACCACG
1 AAGATACAGAAGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCACG
37866973 AAGAT
1 AAGAT
37866978 TTGAAGGGAA
Statistics
Matches: 87, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
48 25 0.29
49 12 0.14
50 2 0.02
51 48 0.55
ACGTcount: A:0.41, C:0.19, G:0.26, T:0.14
Consensus pattern (51 bp):
AAGATACAGAAGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCACG
Found at i:37867361 original size:66 final size:67
Alignment explanation
Indices: 37867251--37867386 Score: 186
Period size: 66 Copynumber: 2.0 Consensus size: 67
37867241 GAAGATACTG
* * * *
37867251 ATCTCTTACCCCGAGCAAGGGGCAAACTTAAGCCATTTGATCTTTTACCTCGAGCTTGGGGCAGA
1 ATCTCTCACCCCGAGCAAGGGGCAAACTTAAGCCATTTGATCTTTTACCCCAAGCCTGGGGCAGA
37867316 TC
66 TC
* * *
37867318 ATCTCTCACCCTGAGCAAGGGG-AGA-TTGAAGCCATTTGATCTTTTACCCCAAGCCTGGGGTAG
1 ATCTCTCACCCCGAGCAAGGGGCAAACTT-AAGCCATTTGATCTTTTACCCCAAGCCTGGGGCAG
37867381 ATC
65 ATC
37867384 ATC
1 ATC
37867387 ATCAGTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
65 2 0.03
66 39 0.64
67 20 0.33
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (67 bp):
ATCTCTCACCCCGAGCAAGGGGCAAACTTAAGCCATTTGATCTTTTACCCCAAGCCTGGGGCAGA
TC
Found at i:37867736 original size:152 final size:152
Alignment explanation
Indices: 37867494--37867784 Score: 465
Period size: 152 Copynumber: 1.9 Consensus size: 152
37867484 ATCAAACCCA
* * *
37867494 CGCTCGATGCGAGCAAATCTTAGAACCCCAGCTTCCTGATGAGACACTGAGAAGTAGGTCGAAGC
1 CGCTCGATGCGAGCAAATCTTAGAACCCCAGCTTCCTAATGAGACACTGAGAAGCAGGTCAAAGC
* ** *
37867559 AATAAAATGGTTACCTTCCTAATGAGATACTGAGAAGTGGAGTAACTTCGTCTTCCTGATGAGAT
66 AATAAAACGGTTACCTTCCTAATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGAT
37867624 ACAGAGAAGTATACCAACTCAG
131 ACAGAGAAGTATACCAACTCAG
* * * *
37867646 CGCTTGATGCGAGCAAATCTTCGAACCCTAGCTTCTTAATGAGACACTGAGAAGCAGGTCAAAGC
1 CGCTCGATGCGAGCAAATCTTAGAACCCCAGCTTCCTAATGAGACACTGAGAAGCAGGTCAAAGC
* *
37867711 AATAAAACGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGAT
66 AATAAAACGGTTACCTTCCTAATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGAT
37867776 ACAGAGAAG
131 ACAGAGAAG
37867785 CGAATTGAAA
Statistics
Matches: 126, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
152 126 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (152 bp):
CGCTCGATGCGAGCAAATCTTAGAACCCCAGCTTCCTAATGAGACACTGAGAAGCAGGTCAAAGC
AATAAAACGGTTACCTTCCTAATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGAT
ACAGAGAAGTATACCAACTCAG
Found at i:37867867 original size:201 final size:200
Alignment explanation
Indices: 37867606--37868158 Score: 800
Period size: 201 Copynumber: 2.7 Consensus size: 200
37867596 TGGAGTAACT
* *
37867606 TCGTCTTCCTGATGAGATACAGAGAAGTATACCAACTCAGCGCTTGATGCGAGCAAATCTTCGAA
1 TCGTCTTCCTGATGAGATACAGAGAAGTATACCAACTCACCGCTCGATGCGAGCAAATCTTCGAA
* *
37867671 CCCTAGCTTCTTAATGAGACACTGAGAAGCAGGTCAAAGCAATAAAACGGTTAGCTTCCTGATGA
66 CCCTAGCTTCTT-ATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGA
* * *
37867736 GATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGAAACAAGTG
130 GATACTGAGAAGCGGACCAAATTCGTCTTCCTAATGAGATACAAAGAAGCGAATTGAAACAAGTG
*
37867801 AGGCGG
195 AGACGG
*
37867807 TTGTCTTCCTGATGAGATACAGAGAAGTATACCAACTCACCGCTCGATGCGAGCAAATCTTCGAA
1 TCGTCTTCCTGATGAGATACAGAGAAGTATACCAACTCACCGCTCGATGCGAGCAAATCTTCGAA
* *
37867872 CCCTAGCTTCCTTATGAGACACTAAGAAGCAGGTCGAAGCAATAAAATGATTAGCTTCCTGATGA
66 CCCTAGCTT-CTTATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGA
* *
37867937 GATATTGAGAAGCGGACCAAATTCGTCTTCCTAATGAGATACAAAGAAGCGGATTGAAACAAGTG
130 GATACTGAGAAGCGGACCAAATTCGTCTTCCTAATGAGATACAAAGAAGCGAATTGAAACAAGTG
*
37868002 ATACGG
195 AGACGG
* * * * *
37868008 TCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCACGCTCGATGCGAGCAAATCT
1 TCGTCTTCCTGATGAGATACAGAGAAGTATACCAACTC--A--C-CGCTCGATGCGAGCAAATCT
* * * * *
37868073 TTGAACCCTAGCTTCCTGATGAGACATTGAGAAGTAGGTCGAAGTAATAAAATGGTTAGCTTCCT
61 TCGAACCCTAGCTT-CTTATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCT
* *
37868138 GATGAGATACAGAGATGCGGA
125 GATGAGATACTGAGAAGCGGA
37868159 TTGAAACAAG
Statistics
Matches: 316, Mismatches: 30, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
201 215 0.68
202 3 0.01
203 1 0.00
205 1 0.00
206 96 0.30
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (200 bp):
TCGTCTTCCTGATGAGATACAGAGAAGTATACCAACTCACCGCTCGATGCGAGCAAATCTTCGAA
CCCTAGCTTCTTATGAGACACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAG
ATACTGAGAAGCGGACCAAATTCGTCTTCCTAATGAGATACAAAGAAGCGAATTGAAACAAGTGA
GACGG
Found at i:37868257 original size:169 final size:169
Alignment explanation
Indices: 37867963--37868313 Score: 542
Period size: 169 Copynumber: 2.1 Consensus size: 169
37867953 CCAAATTCGT
* * *
37867963 CTTCCTAATGAGATACAAAGAAGCGGATTGAAACAAGTGATACGGTCATCTTCCTGATGAGATAC
1 CTTCCTGATGAGATACAAAGAAGCGGATTGAAACAAGTGATACGGTCATCTTCCTAATGAGACAC
* * * *
37868028 TGAGAAGAAGACCAAATCAAACCCACGCTCGATGCGAGCAAATCTTTGAACCCTAGCTTCCTGAT
66 TGAGAAGAAGACCAAATCAAACCCAAGCTCAATGCGAGCAAATCTTCGAACCCCAGCTTCCTGAT
* *
37868093 GAGACATTGAGAAGTAGGTCGAAGTAATAAAATGGTTAG
131 GAGACACTGAGAAGCAGGTCGAAGTAATAAAATGGTTAG
* * * * *
37868132 CTTCCTGATGAGATACAGAGATGCGGATTGAAACAAGTGATGCTGTCATCTTCCTAATGAGACGC
1 CTTCCTGATGAGATACAAAGAAGCGGATTGAAACAAGTGATACGGTCATCTTCCTAATGAGACAC
37868197 TGAGAAGAAGACCAAATCAAACCCAAGC-CTAATGCGAGCAAATCTTCGAACCCCAGCTTCCTGA
66 TGAGAAGAAGACCAAATCAAACCCAAGCTC-AATGCGAGCAAATCTTCGAACCCCAGCTTCCTGA
* *
37868261 TGAGATACTGAGAAGCAGGTCGAAGTAATAAAGTGGTTAG
130 TGAGACACTGAGAAGCAGGTCGAAGTAATAAAATGGTTAG
37868301 CTTCCTGATGAGA
1 CTTCCTGATGAGA
37868314 CATAGAGAAG
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
168 1 0.01
169 164 0.99
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (169 bp):
CTTCCTGATGAGATACAAAGAAGCGGATTGAAACAAGTGATACGGTCATCTTCCTAATGAGACAC
TGAGAAGAAGACCAAATCAAACCCAAGCTCAATGCGAGCAAATCTTCGAACCCCAGCTTCCTGAT
GAGACACTGAGAAGCAGGTCGAAGTAATAAAATGGTTAG
Found at i:37868750 original size:6 final size:6
Alignment explanation
Indices: 37868741--37868847 Score: 66
Period size: 6 Copynumber: 18.8 Consensus size: 6
37868731 ACCAAACCAT
* * *
37868741 TTTAAA TTT-AT TTTAAA -TTAAA TTT-AA TCTAAA TTTAAA TTT-AT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * * * *
37868785 TTTAAA TTTAAAA TTCAAA TGT-AT TTTAAA TTT-AA TTTAAG TTTGAA
1 TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
37868832 TCT-AG TTTAAA TTTAA
1 TTTAAA TTTAAA TTTAA
37868848 TGTTATTATA
Statistics
Matches: 74, Mismatches: 19, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
5 28 0.38
6 41 0.55
7 5 0.07
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:37868753 original size:11 final size:11
Alignment explanation
Indices: 37868741--37868824 Score: 71
Period size: 11 Copynumber: 7.5 Consensus size: 11
37868731 ACCAAACCAT
*
37868741 TTTAAATTTAT
1 TTTAAATTTAA
*
37868752 TTTAAATTAAA
1 TTTAAATTTAA
*
37868763 TTT-AATCTAAA
1 TTTAAAT-TTAA
*
37868774 TTTAAATTTAT
1 TTTAAATTTAA
37868785 TTTAAATTTAAAA
1 TTTAAATTT--AA
* * *
37868798 TTCAAATGTAT
1 TTTAAATTTAA
37868809 TTTAAATTTAA
1 TTTAAATTTAA
37868820 TTTAA
1 TTTAA
37868825 GTTTGAATCT
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
10 3 0.05
11 44 0.76
12 3 0.05
13 8 0.14
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:37868763 original size:16 final size:16
Alignment explanation
Indices: 37868742--37868792 Score: 75
Period size: 16 Copynumber: 3.1 Consensus size: 16
37868732 CCAAACCATT
37868742 TTAAATTTATTTTAAA
1 TTAAATTTATTTTAAA
* *
37868758 TTAAATTTAATCTAAA
1 TTAAATTTATTTTAAA
37868774 TTTAAATTTATTTTAAA
1 -TTAAATTTATTTTAAA
37868791 TT
1 TT
37868793 TAAAATTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 16 0.53
17 14 0.47
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
TTAAATTTATTTTAAA
Found at i:37868780 original size:17 final size:17
Alignment explanation
Indices: 37868741--37868864 Score: 92
Period size: 17 Copynumber: 7.3 Consensus size: 17
37868731 ACCAAACCAT
37868741 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
37868758 -TTAAATTTAATCTAAA
1 TTTAAATTTATTTTAAA
37868774 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* * * *
37868791 TTTAAAATTCAAATGT-AT
1 TTT-AAATT-TATTTTAAA
* *
37868809 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
* * *
37868826 TTTGAATCTAGTTTAAA
1 TTTAAATTTATTTTAAA
*
37868843 TTT-AATGTTATTATAAA
1 TTTAAAT-TTATTTTAAA
37868860 TTTAA
1 TTTAA
37868865 TGTCCAATAC
Statistics
Matches: 83, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
16 21 0.25
17 49 0.59
18 10 0.12
19 3 0.04
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:37868804 original size:24 final size:24
Alignment explanation
Indices: 37868771--37868819 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
37868761 AATTTAATCT
* *
37868771 AAATTTAAATTTATTTTAAATTTA
1 AAATTCAAATGTATTTTAAATTTA
37868795 AAATTCAAATGTATTTTAAATTTA
1 AAATTCAAATGTATTTTAAATTTA
37868819 A
1 A
37868820 TTTAAGTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
AAATTCAAATGTATTTTAAATTTA
Found at i:37871099 original size:17 final size:19
Alignment explanation
Indices: 37871077--37871113 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
37871067 GTAGAGAGTC
*
37871077 TCATACCTT-ATTTT-TTT
1 TCATACATTGATTTTCTTT
37871094 TCATACATTGATTTTCTTT
1 TCATACATTGATTTTCTTT
37871113 T
1 T
37871114 ACTTTGAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.19, C:0.16, G:0.03, T:0.62
Consensus pattern (19 bp):
TCATACATTGATTTTCTTT
Found at i:37871449 original size:17 final size:17
Alignment explanation
Indices: 37871427--37871479 Score: 88
Period size: 17 Copynumber: 3.1 Consensus size: 17
37871417 CATCATTTTC
*
37871427 AATTTATTTTAAAATTA
1 AATTTATTTTAAATTTA
*
37871444 AATTTATTCTAAATTTA
1 AATTTATTTTAAATTTA
37871461 AATTTATTTTAAATTTA
1 AATTTATTTTAAATTTA
37871478 AA
1 AA
37871480 ATTCAAATGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:37873567 original size:29 final size:29
Alignment explanation
Indices: 37873512--37873663 Score: 161
Period size: 29 Copynumber: 5.2 Consensus size: 29
37873502 GCATAAAGGT
*
37873512 CCCT-AAACTGTCCAAAAATATATATTTTTA
1 CCCTCAAACT-TCCAAAAAT-TACATTTTTA
*
37873542 CCCTCAAACTTCTAAAAATTACATTTTTA
1 CCCTCAAACTTCCAAAAATTACATTTTTA
37873571 TCCC-CAAAACTTCCAAAAATTACATTTTTA
1 -CCCTC-AAACTTCCAAAAATTACATTTTTA
* * *
37873601 CCCCCAAACTTCTAAAAATTCCATTTTTGA
1 CCCTCAAACTTCCAAAAATTACATTTTT-A
37873631 -CCTCGAAACTTCC-AAAATTACCA-TTTTA
1 CCCTC-AAACTTCCAAAAATTA-CATTTTTA
37873659 CCCTC
1 CCCTC
37873664 GGATGTCTGA
Statistics
Matches: 106, Mismatches: 8, Indels: 17
0.81 0.06 0.13
Matches are distributed among these distances:
28 1 0.01
29 51 0.48
30 49 0.46
31 5 0.05
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (29 bp):
CCCTCAAACTTCCAAAAATTACATTTTTA
Found at i:37873610 original size:59 final size:59
Alignment explanation
Indices: 37873516--37873661 Score: 190
Period size: 59 Copynumber: 2.5 Consensus size: 59
37873506 AAAGGTCCCT
* *
37873516 AAACTGTCCAAAAATATATATTTTTACCCTCAAACTTCTAAAAATTACATTTTT-ATCCCCA
1 AAACT-TCCAAAAAT-TACATTTTTACCCCCAAACTTCTAAAAATTACATTTTTGA-CCCCA
* * *
37873577 AAACTTCCAAAAATTACATTTTTACCCCCAAACTTCTAAAAATTCCATTTTTGACCTCG
1 AAACTTCCAAAAATTACATTTTTACCCCCAAACTTCTAAAAATTACATTTTTGACCCCA
37873636 AAACTTCC-AAAATTACCA-TTTTACCC
1 AAACTTCCAAAAATTA-CATTTTTACCC
37873662 TCGGATGTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
58 15 0.19
59 48 0.62
60 10 0.13
61 5 0.06
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.34
Consensus pattern (59 bp):
AAACTTCCAAAAATTACATTTTTACCCCCAAACTTCTAAAAATTACATTTTTGACCCCA
Found at i:37881625 original size:3 final size:3
Alignment explanation
Indices: 37881617--37881641 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
37881607 CATCAAACCC
37881617 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
37881642 TTGAACATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:37884367 original size:19 final size:21
Alignment explanation
Indices: 37884326--37884373 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
37884316 TTACTTGGTA
37884326 ATTATATTTGAATGATGATAG
1 ATTATATTTGAATGATGATAG
*
37884347 ATTA-ATTTTAATGAT-ATAG
1 ATTATATTTGAATGATGATAG
37884366 ATTGATAT
1 ATT-ATAT
37884374 ATTTTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 11 0.46
21 6 0.25
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.46
Consensus pattern (21 bp):
ATTATATTTGAATGATGATAG
Found at i:37902069 original size:9 final size:9
Alignment explanation
Indices: 37902045--37902081 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
37902035 GTGTGAATCC
37902045 AAATTAA-T
1 AAATTAATT
37902053 AAATTAATT
1 AAATTAATT
*
37902062 AAACTAATT
1 AAATTAATT
37902071 AAATTAATT
1 AAATTAATT
37902080 AA
1 AA
37902082 TCCAGCTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 7 0.27
9 19 0.73
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (9 bp):
AAATTAATT
Found at i:37902791 original size:16 final size:16
Alignment explanation
Indices: 37902770--37902800 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37902760 ATAATGTGAA
37902770 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
37902786 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
37902801 GGATCCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:37912371 original size:15 final size:17
Alignment explanation
Indices: 37912341--37912372 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
37912331 AAAGTAAGAG
37912341 AAGAAGAGAGAAAGGAA
1 AAGAAGAGAGAAAGGAA
37912358 AAGAAG-GA-AAAGGAA
1 AAGAAGAGAGAAAGGAA
37912373 GCAGGAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
AAGAAGAGAGAAAGGAA
Found at i:37915585 original size:26 final size:26
Alignment explanation
Indices: 37915549--37915601 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
37915539 TTTTGGGCGT
* *
37915549 AATTTTGGACACGTTCATGCAGCGAC
1 AATTTTGGACACGTTCACGCAACGAC
*
37915575 AATTTTGGACATGTTCACGCAACGAC
1 AATTTTGGACACGTTCACGCAACGAC
37915601 A
1 A
37915602 TTCCTGGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
AATTTTGGACACGTTCACGCAACGAC
Done.