Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 134 of 182
Found at i:42035928 original size:671 final size:670
Alignment explanation
Indices: 42034879--42036135 Score: 1796
Period size: 671 Copynumber: 1.9 Consensus size: 670
42034869 TGACCCAATT
*
42034879 CTCTTTATCTCATCAGGAAGATCAGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGTTT
1 CTCTGTATCTCATCAGGAAGATCAGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGTTT
* *
42034944 TGGTCTACTTCGTATACCTTAATAGGAAGATGACCACTTCATTATTTTGACCCACTTCTTTGTAT
66 TGGTCTACTTCCTATACCTTAATAGGAAGATGACCACTTCATTATTTTGACCCACTTCTCTGTAT
* * * *
42035009 CTCATTAGAAAGATGGGGTTTGAAATTTCACTCATATTGAGCTTCGCTTTATTATTTTGGTCAAC
131 CTCATCAGAAAGATGGGGTTTGAAATTTCACTCATATTGAGCTCCACTTTATTATTTTAGTCAAC
* *
42035074 TTTTCTGTATCTCATAAAAAAGATGACCACATTATTATTTTGACCCACTTCTCTATATTTCTTCA
196 TTCTCTGTATCTCATAAAAAAGATGACCACATTATTATTTTGACCCACTTCTCTATATCTCTTCA
*
42035139 AGAAGATGAGGCTTGAAGTTTCACTCATATTGAGCTTCGCTTCCTGTTTTGGTTTACTTCTTTGT
261 AGAAGATGAGGCTTGAAGTTTCACTCATATTGAGCTTCGCTTCCTGTTTTGGTCTACTTCTTTGT
* * * *
42035204 ATTTTATCAGGAAGATGACCACTTCATTGTTTAGTCCCACTTCTCTGTATCTCATCAGGAAGATG
326 ATCTCATCAGGAAGATGACCACTTCATTGTTTAGTACCACTTCTCTATATCTCATCAGGAAGATG
* *
42035269 AGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATTGTTTTGGTCTACTTCTCTGTATCTCAT
391 AGGTTTGAAGTTTCACTCACATTGAGCTGCACTTCATTATTTTGGTCTACTTCTCTGTATCTCAT
*
42035334 AAGGAAGATAACCACTTCATTGTTTTGACCCACTTCTCTATATCTCATCAGGAAAATGAGGTTTG
456 AAGGAAGATAACCACTCCATTGTTTTGACCCACTTCTCTATATCTCATCAGGAAAATGAGGTTTG
*
42035399 AAGTTTCACTCACATTAAGCTTCGCTTCATTATTTTGACCCACTACTCTGTATCTCATCAGGAAG
521 AAGTTTCACTCACATTAAGCTTCGCTTCATTATTTTGACCCACTACTCTATATCTCATCAGGAAG
42035464 ACGAGCTTTAAAGTTTCACTCGCATTGAGCTTCGCTTCATTGTTTTGGTCTATTTCTCTGTATCT
586 ACGAGCTTTAAAGTTTCACTCGCATTGAGCTTCGCTTCATTGTTTTGGTCTATTTCTCTGTATCT
42035529 CATTAAGAAGATAACCACTA
651 CATTAAGAAGATAACCACTA
** * * *
42035549 CTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTTACTCATATTGAGCTTCGCTTCCTTGTTT
1 CTCTGTATCTCATCAGGAAGATCAGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGTTT
42035614 TGGTCTACTTCTCTATATCC-T-ATCAGGAAGATGACCACTTCATTATTTTGACCCACTTCTCTG
66 TGGTCTACTTC-CTATA-CCTTAAT-AGGAAGATGACCACTTCATTATTTTGACCCACTTCTCTG
* * * *
42035677 TATCTCATCAGGAAGATGGGGTTT-AAAGTTTCACTCGTATTGAGCTCCATTTTGTTGA-TTTAG
128 TATCTCATCAGAAAGATGGGGTTTGAAA-TTTCACTCATATTGAGCTCCACTTTATT-ATTTTAG
* ** * * *
42035740 TGAACTTCTCTGTATCTCACT-AGGAAGATTACCGC-TTCATTGTTTTGACCCACTTCTCTGA-A
191 TCAACTTCTCTGTATCTCA-TAAAAAAGATGACCACATT-ATTATTTTGACCCACTTCTCT-ATA
* * *
42035802 TCTCATT-AAGAAGTTGAGGTTTGAAGTTTCACTCATATTGAGCTTCGCTTCATTGTTTTGGTCT
253 TCTC-TTCAAGAAGATGAGGCTTGAAGTTTCACTCATATTGAGCTTCGCTTC-CTGTTTTGGTCT
* * * * *
42035866 ACTTCTCTT-TATCTCATTAGGAAGATGATCAGTTCATTGTTTTG-ACCATTTCTCTATATCTCA
316 ACTTCT-TTGTATCTCATCAGGAAGATGACCACTTCATTGTTTAGTACCACTTCTCTATATCTCA
* * *
42035929 TCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTGCGCTTCATTATTTTGGTCTACTTCT
380 TCAGGAAGATGAGGTTTGAAGTTTCACTCACATTGAGCTGCACTTCATTATTTTGGTCTACTTCT
* * * * * * * *
42035994 TTTTATCTTATTAGGAAGATGACCACTCCATTGTTTTGACCCACTTTTTTGTATCTCATCAGGAA
445 CTGTATCTCATAAGGAAGATAACCACTCCATTGTTTTGACCCACTTCTCTATATCTCATCAGGAA
* * ** **** *
42036059 GATGGGGTTTGAAGTTTCACTCTTATTAAGCTTCGCTTCATTATTTTGGTTTACTTCTCTATATC
510 AATGAGGTTTGAAGTTTCACTCACATTAAGCTTCGCTTCATTATTTTGACCCACTACTCTATATC
42036124 TCATCAGGAAGA
575 TCATCAGGAAGA
42036136 TGACTACTTC
Statistics
Matches: 515, Mismatches: 61, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
670 77 0.15
671 384 0.75
672 52 0.10
673 2 0.00
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.40
Consensus pattern (670 bp):
CTCTGTATCTCATCAGGAAGATCAGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGTTT
TGGTCTACTTCCTATACCTTAATAGGAAGATGACCACTTCATTATTTTGACCCACTTCTCTGTAT
CTCATCAGAAAGATGGGGTTTGAAATTTCACTCATATTGAGCTCCACTTTATTATTTTAGTCAAC
TTCTCTGTATCTCATAAAAAAGATGACCACATTATTATTTTGACCCACTTCTCTATATCTCTTCA
AGAAGATGAGGCTTGAAGTTTCACTCATATTGAGCTTCGCTTCCTGTTTTGGTCTACTTCTTTGT
ATCTCATCAGGAAGATGACCACTTCATTGTTTAGTACCACTTCTCTATATCTCATCAGGAAGATG
AGGTTTGAAGTTTCACTCACATTGAGCTGCACTTCATTATTTTGGTCTACTTCTCTGTATCTCAT
AAGGAAGATAACCACTCCATTGTTTTGACCCACTTCTCTATATCTCATCAGGAAAATGAGGTTTG
AAGTTTCACTCACATTAAGCTTCGCTTCATTATTTTGACCCACTACTCTATATCTCATCAGGAAG
ACGAGCTTTAAAGTTTCACTCGCATTGAGCTTCGCTTCATTGTTTTGGTCTATTTCTCTGTATCT
CATTAAGAAGATAACCACTA
Found at i:42036240 original size:368 final size:368
Alignment explanation
Indices: 42035543--42036646 Score: 1350
Period size: 368 Copynumber: 3.0 Consensus size: 368
42035533 AAGAAGATAA
* *
42035543 CCACTACTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTTACTCATATTGAGCTTCGCTTCC
1 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTTCGCTT-C
* * * *
42035608 TTGTTTTGGTCTACTTCTCTATATCCTATCAGGAAGATGACCACTTCATTATTTTGACCCACTTC
65 TTGTTTTGGTCTACTTCTTTATATCTTATTAGGAAGATGACCACTCCATTATTTTGACCCACTTC
* *
42035673 TCTGTATCTCATCAGGAAGATGGGGTTTAAAGTTTCACTCGTATTGAGCTCCATTTTGTTGATTT
130 TCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTCCACTTTGTTGATTT
* * * * * * **
42035738 AGTGAACTTCTCTGTATCTCA-CTAGGAAGATTACCGCTTCATTGTTTTGACCCACTTCTCTGAA
195 AGTCAACTTCTCTGTATCTCATC-AGGAAGATGACTGCTTCATTATTTTAACCCTCTTCTCTTTA
* * * * * * *
42035802 TCTCA-TTAAGAAGTTGAGGTTTGAAGTTTCACTCATATTGAGCTTCGCTTCATTGTTTTGGTCT
259 TCTCATTTGA-AAGATGAGGTTTGAAGTTTCACTCAAATTGAGCTACGCTTCGTTGATTTGGTCC
*
42035866 ACTTCTCTTTATCTCATTAGGAAGATGATCAG-TTCATTGTTTTGA-
323 ACTTCTCTTTATCTCATTAGGAAGATGA-CCGCTTCATTGTTTTGAC
* * *
42035911 CCATTTCTCTATATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTGCGCTTCA
1 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTTCGCTTC-
* * * *
42035976 TTATTTTGGTCTACTTCTTTTTATCTTATTAGGAAGATGACCACTCCATTGTTTTGACCCACTTT
65 TTGTTTTGGTCTACTTCTTTATATCTTATTAGGAAGATGACCACTCCATTATTTTGACCCACTTC
* * * * * **
42036041 TTTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCTTATTAAGCTTCGCTTCATT-ATTT
130 TCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTCCACTTTGTTGA-TT
* ** * *
42036105 TGGTTTACTTCTCTATATCTCATCAGGAAGATGACTACTTCATTATTTTAACCCTCTTCTCTTTA
194 TAGTCAACTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATTATTTTAACCCTCTTCTCTTTA
* * * *
42036170 TCTCATTTGAAAGAT-AGGGTTTGAAGTTTCACTTACATTGAGCTCCGCTTCGTTGATTTAGTCC
259 TCTCATTTGAAAGATGA-GGTTTGAAGTTTCACTCAAATTGAGCTACGCTTCGTTGATTTGGTCC
* *
42036234 ACTTCTCTATATCTCATTAGGAAGATGACCGCTTTATTGTTTTGAC
323 ACTTCTCTTTATCTCATTAGGAAGATGACCGCTTCATTGTTTTGAC
* * *
42036280 CCACTTCTCTGTATCTCATCAGGAAGATAGGGTTTAAAGTTTCACTCATATTGAGCTTCTCTTTC
1 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTTCGC-TTC
* * * * ** ***
42036345 TTGTTTTGGTC-ACTTCTTTGTATCTCATTAGGAAGATGATCATTGTATTATTTTGATTGACTTC
65 TTGTTTTGGTCTACTTCTTTATATCTTATTAGGAAGATGACCACTCCATTATTTTGACCCACTTC
* * *
42036409 TCTATATCTCATTAGGAAAATGGGGTTTGAAGTTTCACTCGTATTGAGCTCCACTTTGTTGATTT
130 TCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTCCACTTTGTTGATTT
* * * * *
42036474 AGTCCATTTCTTTGTATCTCATCAGGAAGATGACTGCTTCATTATTTTGATCCAT-TT-T-TTGT
195 AGTCAACTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATTATTTT-AACCCTCTTCTCTT-T
* * *
42036536 ATCTCATTATG-AAGATGAGGTTTAAAGTTTCACTCAAATTGAGCTATGCTTCGTTAATTTGGTC
258 ATCTCATT-TGAAAGATGAGGTTTGAAGTTTCACTCAAATTGAGCTACGCTTCGTTGATTTGGTC
*
42036600 CACTTCT-TTGTATCTCATCAGGAAGATGACCGCTTCATTTGTTTTGA
322 CACTTCTCTT-TATCTCATTAGGAAGATGACCGCTTCA-TTGTTTTGA
42036647 TCTGAGCCAT
Statistics
Matches: 628, Mismatches: 93, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
366 3 0.00
367 91 0.14
368 457 0.73
369 74 0.12
370 3 0.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (368 bp):
CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTTCGCTTCT
TGTTTTGGTCTACTTCTTTATATCTTATTAGGAAGATGACCACTCCATTATTTTGACCCACTTCT
CTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTCCACTTTGTTGATTTA
GTCAACTTCTCTGTATCTCATCAGGAAGATGACTGCTTCATTATTTTAACCCTCTTCTCTTTATC
TCATTTGAAAGATGAGGTTTGAAGTTTCACTCAAATTGAGCTACGCTTCGTTGATTTGGTCCACT
TCTCTTTATCTCATTAGGAAGATGACCGCTTCATTGTTTTGAC
Found at i:42036503 original size:491 final size:490
Alignment explanation
Indices: 42035552--42036638 Score: 1434
Period size: 491 Copynumber: 2.2 Consensus size: 490
42035542 ACCACTACTC
* * *
42035552 TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTTACTCATATTGAGCTTCGCTTCCTTGTTTTGG
1 TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTTCGCTTCATTATTTTGG
*
42035617 TCTACTTCTCTATATC-CTATCAGGAAGATGACCACTTCATTATTTTGACCCACTTCTCTGTATC
66 TCTACTTCTCTATATCTC-ATCAGGAAGATGACCACTTCATTATTTTAACCCACTTCTCTGTATC
* * ** * * *
42035681 TCATCAGGAAGATGGGGTTTAAAGTTTCACTCGTATTGAGCTCCATTTTGTTGATTTAGTGAACT
130 TCATCAGAAAGATAGGGTTTAAAGTTTCACTCACATTGAGCTCCACTTCGTTGATTTAGTCAACT
* * *
42035746 TCTCTGTATCTCACTAGGAAGATTACCGCTTCATTGTTTTGACCCACTTCTCTGAATCTCATTAA
195 TCTCTATATCTCACTAGGAAGATGACCGCTTCATTGTTTTGACCCACTTCTCTGAATCTCATCAA
* *
42035811 GAAGTTGAGGTTTGAAGTTTCACTCATATTGAGCTTCGCTTCATTGTTTTGGTCTACTTCTCTTT
260 GAAGTAGAGGTTTAAAGTTTCACTCATATTGAGCTTCGCTTCATTGTTTTGGTCTACTTCTCTTT
* * *
42035876 ATCTCATTAGGAAGATGATCAGTTCATTGTTTTGACCATTTCTCTATATCTCATCAGGAAGATGG
325 ATCTCATTAGGAAGATGATCAGTTCATTATTTTGACCACTTCTCTATATCTCATCAGGAAAATGG
* * * * * * *
42035941 GGTTTGAAGTTTCACTCATATTGAGCTGCGCTTCATTATTTTGGTCTACTTCTTTTTATCTTATT
390 GGTTTGAAGTTTCACTCATATTGAGCTCCACTTCATTATTTTAGTCCACTTCTTTGTATCTCATC
*
42036006 AGGAAGATGACCACTCCATTGTTTTGACCCACTTTTT
455 AGGAAGATGACCACTCCATTATTTTGACCCA-TTTTT
* *
42036043 TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCTTATTAAGCTTCGCTTCATTATTTTGG
1 TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTTCGCTTCATTATTTTGG
* * * *
42036108 TTTACTTCTCTATATCTCATCAGGAAGATGACTACTTCATTATTTTAACCCTCTTCTCTTTATCT
66 TCTACTTCTCTATATCTCATCAGGAAGATGACCACTTCATTATTTTAACCCACTTCTCTGTATCT
** * * * *
42036173 CATTTGAAAGATAGGGTTTGAAGTTTCACTTACATTGAGCTCCGCTTCGTTGATTTAGTCCACTT
131 CATCAGAAAGATAGGGTTTAAAGTTTCACTCACATTGAGCTCCACTTCGTTGATTTAGTCAACTT
* * * *
42036238 CTCTATATCTCATTAGGAAGATGACCGCTTTATTGTTTTGACCCACTTCTCTGTATCTCATCAGG
196 CTCTATATCTCACTAGGAAGATGACCGCTTCATTGTTTTGACCCACTTCTCTGAATCTCATCAAG
*
42036303 AAGATAG-GGTTTAAAGTTTCACTCATATTGAGCTTCTCTTTC-TTGTTTTGGTC-ACTTCT-TT
261 AAG-TAGAGGTTTAAAGTTTCACTCATATTGAGCTTCGC-TTCATTGTTTTGGTCTACTTCTCTT
* ** *
42036364 GTATCTCATTAGGAAGATGATCA-TTGTATTATTTTGATTGACTTCTCTATATCTCATTAGGAAA
324 -TATCTCATTAGGAAGATGATCAGTT-CATTATTTTGA-CCACTTCTCTATATCTCATCAGGAAA
* ** *
42036428 ATGGGGTTTGAAGTTTCACTCGTATTGAGCTCCACTTTGTTGA-TTTAGTCCATTTCTTTGTATC
386 ATGGGGTTTGAAGTTTCACTCATATTGAGCTCCACTTCATT-ATTTTAGTCCACTTCTTTGTATC
** * *
42036492 TCATCAGGAAGATGACTGCTTCATTATTTTGATCCATTTTT
450 TCATCAGGAAGATGACCACTCCATTATTTTGACCCATTTTT
* * * * * * *
42036533 TGTATCTCATTATGAAGATGAGGTTTAAAGTTTCACTCAAATTGAGCTAT-GCTTCGTTAATTTG
1 TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCT-TCGCTTCATTATTTTG
* * * *
42036597 GTCCACTTCTTTGTATCTCATCAGGAAGATGACCGCTTCATT
65 GTCTACTTCTCTATATCTCATCAGGAAGATGACCACTTCATT
42036639 TGTTTTGATC
Statistics
Matches: 517, Mismatches: 71, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
489 4 0.01
490 131 0.25
491 375 0.73
492 7 0.01
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (490 bp):
TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGCTTCGCTTCATTATTTTGG
TCTACTTCTCTATATCTCATCAGGAAGATGACCACTTCATTATTTTAACCCACTTCTCTGTATCT
CATCAGAAAGATAGGGTTTAAAGTTTCACTCACATTGAGCTCCACTTCGTTGATTTAGTCAACTT
CTCTATATCTCACTAGGAAGATGACCGCTTCATTGTTTTGACCCACTTCTCTGAATCTCATCAAG
AAGTAGAGGTTTAAAGTTTCACTCATATTGAGCTTCGCTTCATTGTTTTGGTCTACTTCTCTTTA
TCTCATTAGGAAGATGATCAGTTCATTATTTTGACCACTTCTCTATATCTCATCAGGAAAATGGG
GTTTGAAGTTTCACTCATATTGAGCTCCACTTCATTATTTTAGTCCACTTCTTTGTATCTCATCA
GGAAGATGACCACTCCATTATTTTGACCCATTTTT
Found at i:42036948 original size:49 final size:49
Alignment explanation
Indices: 42036872--42037157 Score: 238
Period size: 49 Copynumber: 5.9 Consensus size: 49
42036862 CTTCATCCTC
* * *
42036872 AGGGTATAAGATTCGCTGTTACAGCCTCAATCTTTCCCTTCACATCTCT
1 AGGGTATAAGATTCGCCGTTGCGGCCTCAATCTTTCCCTTCACATCTCT
* * * * * *
42036921 AGGGTATAAGGTTCACCGTTGTGGCCTCGACCTTTCCCTTCACATCTTT
1 AGGGTATAAGATTCGCCGTTGCGGCCTCAATCTTTCCCTTCACATCTCT
* * ** ** *
42036970 AGGGT-TCAAGATTCGTCGTTGCGGCTTCAATC-TAACCTTCTTATTTCT
1 AGGGTAT-AAGATTCGCCGTTGCGGCCTCAATCTTTCCCTTCACATCTCT
* * * * * * * *
42037018 AAGGTATAAGGTTCACCGTTCCAGCCTCAACCTTTCCCTTCAAATCTCA
1 AGGGTATAAGATTCGCCGTTGCGGCCTCAATCTTTCCCTTCACATCTCT
* * * * *
42037067 AGAGTACAAGATTTGCCGTTGCGACCTCAATCTTTCCCTTCAGAT-TCCT
1 AGGGTATAAGATTCGCCGTTGCGGCCTCAATCTTTCCCTTCACATCT-CT
* *
42037116 AAGGTA-AGAGATTTGCCGTTGCGGCCTCAATCTTTCCCTTCA
1 AGGGTATA-AGATTCGCCGTTGCGGCCTCAATCTTTCCCTTCA
42037158 TGTCTTTAGA
Statistics
Matches: 181, Mismatches: 51, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
48 35 0.19
49 146 0.81
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (49 bp):
AGGGTATAAGATTCGCCGTTGCGGCCTCAATCTTTCCCTTCACATCTCT
Found at i:42037077 original size:97 final size:97
Alignment explanation
Indices: 42036918--42037099 Score: 238
Period size: 97 Copynumber: 1.9 Consensus size: 97
42036908 CCTTCACATC
* *** * * ** * *
42036918 TCTAGGGTATAAGGTTCACCGTTGTGGCCTCGACCTTTCCCTTCACATCTTTAGGGTTCAAGATT
1 TCTAAGGTATAAGGTTCACCGTTCCAGCCTCAACCTTTCCCTTCAAATCTCAAGAGTACAAGATT
* * *
42036983 CGTCGTTGCGGCTTCAATCTAACCTTCTTATT
66 CGCCGTTGCGACCTCAATCTAACCTTCTTATT
42037015 TCTAAGGTATAAGGTTCACCGTTCCAGCCTCAACCTTTCCCTTCAAATCTCAAGAGTACAAGATT
1 TCTAAGGTATAAGGTTCACCGTTCCAGCCTCAACCTTTCCCTTCAAATCTCAAGAGTACAAGATT
*
42037080 TGCCGTTGCGACCTCAATCT
66 CGCCGTTGCGACCTCAATCT
42037100 TTCCCTTCAG
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
97 71 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (97 bp):
TCTAAGGTATAAGGTTCACCGTTCCAGCCTCAACCTTTCCCTTCAAATCTCAAGAGTACAAGATT
CGCCGTTGCGACCTCAATCTAACCTTCTTATT
Found at i:42037178 original size:49 final size:47
Alignment explanation
Indices: 42037041--42037179 Score: 145
Period size: 49 Copynumber: 2.8 Consensus size: 47
42037031 CACCGTTCCA
* * * *
42037041 GCCTCAACCTTTCCCTTCAAATCTCAAGAGTACAAGATTTGCCGTTGCG
1 GCCTCAATCTTTCCCTTC-AGTCTTAAGAGTA-AGGATTTGCCGTTGCG
* *
42037090 ACCTCAATCTTTCCCTTCAGATTCCTAAG-GTAAGAGATTTGCCGTTGCG
1 GCCTCAATCTTTCCCTTCAG--TCTTAAGAGTAAG-GATTTGCCGTTGCG
*
42037139 GCCTCAATCTTTCCCTTCATGTCTTTAGAGTATAGGATTTG
1 GCCTCAATCTTTCCCTTCA-GTCTTAAGAGTA-AGGATTTG
42037180 ACATTTTCTC
Statistics
Matches: 75, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
48 7 0.09
49 60 0.80
50 8 0.11
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (47 bp):
GCCTCAATCTTTCCCTTCAGTCTTAAGAGTAAGGATTTGCCGTTGCG
Found at i:42038001 original size:21 final size:21
Alignment explanation
Indices: 42037975--42038025 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
42037965 GACCTCTCCT
*
42037975 TTTCTTTTTCTTC-TTCCTTTA
1 TTTCTTTAT-TTCTTTCCTTTA
42037996 TTTCTTTATTTCTTTCC-TT-
1 TTTCTTTATTTCTTTCCTTTA
42038015 TTTCTTTATTT
1 TTTCTTTATTT
42038026 TTATCTGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 11 0.39
20 5 0.18
21 12 0.43
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTCTTTATTTCTTTCCTTTA
Found at i:42043376 original size:31 final size:30
Alignment explanation
Indices: 42043338--42043434 Score: 95
Period size: 31 Copynumber: 3.1 Consensus size: 30
42043328 TAAATTCAAA
* **
42043338 TTTTTGGAAAGTTTAGGGGTCAACTTTGAAT
1 TTTTTGGAAAGTTTAGGGGTAAAAGTT-AAT
* *
42043369 TTTTTGGAAAGTTCGAGGGTTAAAAGTTAAT
1 TTTTTGGAAAGTT-TAGGGGTAAAAGTTAAT
* **
42043400 TTTTTAGAAAGTTTAGGGGTTAAAACATAAT
1 TTTTTGGAAAGTTTAGGGG-TAAAAGTTAAT
42043431 TTTT
1 TTTT
42043435 AAAAAGTTTG
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
30 4 0.07
31 41 0.76
32 9 0.17
ACGTcount: A:0.31, C:0.04, G:0.23, T:0.42
Consensus pattern (30 bp):
TTTTTGGAAAGTTTAGGGGTAAAAGTTAAT
Found at i:42043441 original size:30 final size:30
Alignment explanation
Indices: 42043366--42043447 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
42043356 GTCAACTTTG
** * **
42043366 AATTTTTTGGAAAGTTCGAGGGTTAAAAGTT
1 AATTTTTTAAAAAGTTTG-GGGTTAAAACAT
*
42043397 AATTTTTTAGAAAGTTTAGGGGTTAAAACAT
1 AATTTTTTAAAAAGTTT-GGGGTTAAAACAT
42043428 AA-TTTTTAAAAAGTTTGGGG
1 AATTTTTTAAAAAGTTTGGGG
42043448 ATCAAATCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
29 4 0.09
30 13 0.29
31 27 0.60
32 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.23, T:0.39
Consensus pattern (30 bp):
AATTTTTTAAAAAGTTTGGGGTTAAAACAT
Found at i:42045296 original size:27 final size:27
Alignment explanation
Indices: 42045254--42045345 Score: 89
Period size: 27 Copynumber: 3.3 Consensus size: 27
42045244 GAAAGTTCGG
42045254 GGGTAAAATGGTAATTTTGAAAAATTA
1 GGGTAAAATGGTAATTTTGAAAAATTA
* * *
42045281 GGGTAAAAATGG-AATTTT-AGAAGTTT
1 GGGT-AAAATGGTAATTTTGAAAAATTA
*
42045307 GAGGTAAAATGGTATTTTTTGGAAAAATTA
1 G-GGTAAAATGGTA-ATTTT-GAAAAATTA
42045337 GGGTTAAAA
1 GGG-TAAAA
42045346 ATGGAGTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
26 13 0.25
27 14 0.27
28 11 0.22
29 2 0.04
30 11 0.22
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTGAAAAATTA
Found at i:42045323 original size:26 final size:26
Alignment explanation
Indices: 42045254--42045345 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 26
42045244 GAAAGTTCGG
42045254 GGGTAAAATGGTAATTTTGAAAAATTA
1 GGGTAAAATGGT-ATTTTGAAAAATTA
* * * *
42045281 GGGTAAAAATGGAATTTT-AGAAGTTT
1 GGGT-AAAATGGTATTTTGAAAAATTA
42045307 GAGGTAAAATGGTATTTTTTGGAAAAATTA
1 G-GGTAAAATGGTA--TTTT-GAAAAATTA
42045337 GGGTTAAAA
1 GGG-TAAAA
42045346 ATGGAGTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
26 14 0.28
27 12 0.24
28 11 0.22
29 2 0.04
30 11 0.22
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (26 bp):
GGGTAAAATGGTATTTTGAAAAATTA
Found at i:42045507 original size:31 final size:30
Alignment explanation
Indices: 42045229--42045510 Score: 201
Period size: 30 Copynumber: 9.6 Consensus size: 30
42045219 TCCAAGATCA
* * *
42045229 AAAATGTAGTTTTTGGAAAGTTCGGGGGT-
1 AAAATGTAATTTTTGGAAAGTTTGAGGGTC
** *
42045258 AAAATGGTAA-TTTT-GAAAAATT-AGGGTA
1 AAAAT-GTAATTTTTGGAAAGTTTGAGGGTC
* *
42045286 AAAATGGAA-TTTTAG-AAGTTTGA-GGT-
1 AAAATGTAATTTTTGGAAAGTTTGAGGGTC
* ** *
42045312 AAAATGGTATTTTTTGGAAAAATT-AGGGTTA
1 AAAAT-GTAATTTTTGGAAAGTTTGAGGG-TC
* * * * **
42045343 AAAATGGAGTTTTTGG-AAGTTCGAAGGAA
1 AAAATGTAATTTTTGGAAAGTTTGAGGGTC
* *
42045372 AAAATGGTAA-TTTTAGAAAGTTTAGAGGGTT
1 AAAAT-GTAATTTTTGGAAAGTTT-GAGGGTC
*
42045403 AAAATGTAATTTTTGGAAAGTTTGGGGGTC
1 AAAATGTAATTTTTGGAAAGTTTGAGGGTC
*
42045433 AAAATGTAATATTTGGAAAGTTTG-GGGATC
1 AAAATGTAATTTTTGGAAAGTTTGAGGG-TC
* *
42045463 AAAATGTATTTTTTAGAAAAGTTTGAGGGTC
1 AAAATGTAATTTTT-GGAAAGTTTGAGGGTC
42045494 AAAATGTAATTTTTGGA
1 AAAATGTAATTTTTGGA
42045511 CATATTGGGG
Statistics
Matches: 199, Mismatches: 36, Indels: 35
0.74 0.13 0.13
Matches are distributed among these distances:
26 5 0.03
27 20 0.10
28 18 0.09
29 32 0.16
30 71 0.36
31 50 0.25
32 3 0.02
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (30 bp):
AAAATGTAATTTTTGGAAAGTTTGAGGGTC
Found at i:42045509 original size:61 final size:61
Alignment explanation
Indices: 42045229--42045510 Score: 178
Period size: 61 Copynumber: 4.8 Consensus size: 61
42045219 TCCAAGATCA
* * * * ** *
42045229 AAAATGTAGTTTTTGGAAAGTTCGGGGGT-AAAATGGTAA-TTTT-GAAAAATT--AGGGTA
1 AAAATGTAATTTTTGAAAAGTTTGAGGGTCAAAAT-GTAATTTTTGGAAAGTTTAGAGGGTC
* * * ** * *
42045286 AAAATGGAA-TTTT-AGAAGTTTGA-GGT-AAAATGGTATTTTTTGGAAAAATTAG-GGTTA
1 AAAATGTAATTTTTGAAAAGTTTGAGGGTCAAAAT-GTAATTTTTGGAAAGTTTAGAGGGTC
* * * * * ** * *
42045343 AAAATGGAGTTTTTG-GAAGTTCGAAGGAAAAAATGGTAA-TTTTAGAAAGTTTAGAGGGTT
1 AAAATGTAATTTTTGAAAAGTTTGAGGGTCAAAAT-GTAATTTTTGGAAAGTTTAGAGGGTC
* * *
42045403 AAAATGTAATTTTTGGAAAGTTTGGGGGTCAAAATGTAATATTTGGAAAGTTT-G-GGGATC
1 AAAATGTAATTTTTGAAAAGTTTGAGGGTCAAAATGTAATTTTTGGAAAGTTTAGAGGG-TC
*
42045463 AAAATGTATTTTTTAGAAAAGTTTGAGGGTCAAAATGTAATTTTTGGA
1 AAAATGTAATTTTT-GAAAAGTTTGAGGGTCAAAATGTAATTTTTGGA
42045511 CATATTGGGG
Statistics
Matches: 180, Mismatches: 32, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
54 12 0.07
55 10 0.06
56 12 0.07
57 19 0.11
58 12 0.07
59 17 0.09
60 44 0.24
61 54 0.30
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (61 bp):
AAAATGTAATTTTTGAAAAGTTTGAGGGTCAAAATGTAATTTTTGGAAAGTTTAGAGGGTC
Found at i:42046606 original size:19 final size:19
Alignment explanation
Indices: 42046582--42046654 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 19
42046572 CCTTCTTGAT
42046582 TTTATTTATTAAATATATA
1 TTTATTTATTAAATATATA
*
42046601 TTTATTTACTATTTTTAATATATA
1 TTTA-TT--TA--TTAAATATATA
** *
42046625 TTTATTTATCCAATTTATA
1 TTTATTTATTAAATATATA
*
42046644 TTTATTAATTA
1 TTTATTTATTA
42046655 TTATTTCCTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
19 20 0.48
20 2 0.05
21 2 0.05
22 2 0.05
23 2 0.05
24 14 0.33
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTATTTATTAAATATATA
Found at i:42046620 original size:24 final size:26
Alignment explanation
Indices: 42046584--42046632 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 26
42046574 TTCTTGATTT
42046584 TATTTATTAAATATATATTTATTTAC
1 TATTTATTAAATATATATTTATTTAC
42046610 TATTT-TT-AATATATATTTATTTA
1 TATTTATTAAATATATATTTATTTA
42046633 TCCAATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 16 0.70
25 2 0.09
26 5 0.22
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (26 bp):
TATTTATTAAATATATATTTATTTAC
Found at i:42046641 original size:24 final size:24
Alignment explanation
Indices: 42046588--42046649 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
42046578 TGATTTTATT
* *
42046588 TATTAAATATATATTTATTTACTA
1 TATTTAATATATATTTATTTACCA
*
42046612 TTTTTAATATATATTTATTTATCCA
1 TATTTAATATATATTTATTTA-CCA
*
42046637 -ATTT-ATATTTATT
1 TATTTAATATATATT
42046650 AATTATTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
23 8 0.25
24 22 0.69
25 2 0.06
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (24 bp):
TATTTAATATATATTTATTTACCA
Found at i:42046781 original size:122 final size:121
Alignment explanation
Indices: 42046636--42046871 Score: 400
Period size: 122 Copynumber: 1.9 Consensus size: 121
42046626 TTATTTATCC
*
42046636 AATTTATATTTATTAATTATTATTTCCTAAAAAACGTTTCATAACAAATGATCATAAAAGGTTAT
1 AATTTATATTTATTAATTATTATTTCCTAAAAAACATTTCATAACAAATGATCATAAAAGGTTAT
*
42046701 AATAATGGAATAAATTAATACATTAATGTAACATTAAAATGTTTTGAAATCCAATCA
66 AATAATGGAATAAATTAATACATTAATGT-ACATTAAAACGTTTTGAAATCCAATCA
* * *
42046758 AATTTATATTTATTAATTATTATTTCCTAAAAAGCATTTCATAATAAATGGTCATAAAAGGTTAT
1 AATTTATATTTATTAATTATTATTTCCTAAAAAACATTTCATAACAAATGATCATAAAAGGTTAT
* *
42046823 AATAATGGAATAAATTAATGCATTAATGTATATTAAAACGTTTTGAAAT
66 AATAATGGAATAAATTAATACATTAATGTACATTAAAACGTTTTGAAAT
42046872 TCATATGATA
Statistics
Matches: 107, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
121 18 0.17
122 89 0.83
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (121 bp):
AATTTATATTTATTAATTATTATTTCCTAAAAAACATTTCATAACAAATGATCATAAAAGGTTAT
AATAATGGAATAAATTAATACATTAATGTACATTAAAACGTTTTGAAATCCAATCA
Found at i:42047540 original size:29 final size:27
Alignment explanation
Indices: 42047478--42047540 Score: 63
Period size: 29 Copynumber: 2.2 Consensus size: 27
42047468 TTGAATTAAA
* *
42047478 AAAATTAAATTAAAATTTATTTAAATTT
1 AAAA-TAAATTAAAATTAATTTAAAATT
*
42047506 AGAAATAAATTTAAACTTAATTTAAAAATT
1 A-AAATAAA-TTAAAATTAATTT-AAAATT
42047536 AAAAT
1 AAAAT
42047541 TTGATCCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 5 0.17
29 18 0.62
30 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (27 bp):
AAAATAAATTAAAATTAATTTAAAATT
Found at i:42048300 original size:49 final size:49
Alignment explanation
Indices: 42048141--42049044 Score: 611
Period size: 49 Copynumber: 18.6 Consensus size: 49
42048131 ACTAAATTTA
* * * *
42048141 CCGTTACGGCTTAAAT-TTTCCTTTTCATG-CTTCTGAGGTA-TAAGGTTTG
1 CCGTTGCGACTTAAATCTTTCC-CTTCATGTC-TCTGAGGTACT-AGGTTCG
** * * ** * * *
42048190 CTATTGAGACTTAAACCTTTCCCTTTGTGTCT-TCGTGGTACT-GATTCA
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCT-GAGGTACTAGGTTCG
* * *
42048238 CCGTTGCGGCTTAAATATTTCCCTTCAAGTCTCTGAGGTA-TAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTACT-AGGTTCG
* * ** * * *
42048287 CCATTGCGACTTAAA-CCTTCCCTTTGTGTCT-TCATGGTACTAGATTTG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGA-GGTACTAGGTTCG
* * *
42048335 CCGTTGCGGCTTAAACCTTTCCCTTCATGTCCCTGAGGTA-TAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTACT-AGGTTCG
* * ** * *
42048384 CCATTGCGGCTTAAA-CTTTCCCTTTGTGTCT-TCATGGTACTAGATTCAG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGA-GGTACTAGGTTC-G
* * * * * *
42048433 -CGTTACGGCTTAAATCTTTCCCGTCCTGTCTTTGTGGTACT-GGATTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGG-TTCG
* * * * *
42048481 TCGTTGCGTCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGCTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCG
* * * * *
42048530 CCGTTGCGACTTAAACCTTTCCCTCCATATCT-TCGTGGTACTAGATTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCT-GAGGTACTAGGTTCG
** * * *
42048579 CTATTGCGGCTTAAATCTTTCCCTTCATGTCT-TCGTGGTACT-GGATTTG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCT-GAGGTACTAGG-TTCG
* *
42048628 CCGTTGC-AGCTTAAATCTTTCCCTTTATG-CTTCTGAGGTACAAGGTTCG
1 CCGTTGCGA-CTTAAATCTTTCCCTTCATGTC-TCTGAGGTACTAGGTTCG
* * * * *
42048677 CCGTTGCGACTTAAACCTTTCCCTCCATATCT-TCGTGGTACTAGATTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCT-GAGGTACTAGGTTCG
* * * *
42048726 CCATTGCGACTTAAATCTTTCCCTTCATGTCT-TCGTGGTACTGGGTTCA
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCT-GAGGTACTAGGTTCG
* ** * * * *
42048775 CCGTTGTGGTTTAAATCTTTCCATTTATG-CTTCTGAGGTACAAGGTTCA
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTC-TCTGAGGTACTAGGTTCG
* * *
42048824 CCGTTGCGACTTAAACCTTTCCCTTCATGTTTCTGAGGTACAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCG
* * ** * *
42048873 TCGTTGCGACTTAAACCTTTCCCTTCAAATCT-TCGTGGTACTAGATTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCT-GAGGTACTAGGTTCG
* * *
42048922 TCGTTGCGACTTAAATCTTTCCCATCAT-TCTC--ATGGTA-TTGGATTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGA-GGTACTAGG-TTCG
* * * * *
42048969 CCGTTACGGCTTAAATCTTTCCCTTTATG-CTTCTGGGGTACAAGGTTCG
1 CCGTTGCGACTTAAATCTTTCCCTTCATGTC-TCTGAGGTACTAGGTTCG
* *
42049018 CCATTGCGACTTAAACCTTTCCCTTCA
1 CCGTTGCGACTTAAATCTTTCCCTTCA
42049045 AATTTTCATG
Statistics
Matches: 665, Mismatches: 149, Indels: 82
0.74 0.17 0.09
Matches are distributed among these distances:
46 2 0.00
47 37 0.06
48 113 0.17
49 493 0.74
50 20 0.03
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.38
Consensus pattern (49 bp):
CCGTTGCGACTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCG
Found at i:42048619 original size:147 final size:147
Alignment explanation
Indices: 42048283--42049044 Score: 803
Period size: 147 Copynumber: 5.2 Consensus size: 147
42048273 AGGTATAAGG
* ** * * * *
42048283 TTCGCCATTGCGACTTAAA-CCTTCCCTTTGTGTCTTCATGGTACTAGATTTGCCGTTGCGGCTT
1 TTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGCGTCTT
* * * * * ***
42048347 AAACCTTTCCCTTCATG-TCCCTGAGGTATAAGGTTCGCCATTGCGGCTTAAA-CTTTCCCTTTG
66 AAATCTTTCCCTTCATGCT-TCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTCCA
* *
42048410 TGTCTTCATGGTACTAGA
130 TATCTTCGTGGTACTAGA
* * * * * * *
42048428 TTCAG-CGTTACGGCTTAAATCTTTCCCGTCCTGTCTTTGTGGTACTGGATTCGTCGTTGCGTCT
1 TTC-GCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGCGTCT
* *
42048492 TAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGCTCGCCGTTGCGACTTAAACCTTTCCCTCCA
65 TAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTCCA
42048557 TATCTTCGTGGTACTAGA
130 TATCTTCGTGGTACTAGA
* * *
42048575 TTCGCTATTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTTGCCGTTGCAG-CT
1 TTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGC-GTCT
*
42048639 TAAATCTTTCCCTTTATGCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTCCA
65 TAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTCCA
42048704 TATCTTCGTGGTACTAGA
130 TATCTTCGTGGTACTAGA
* * *
42048722 TTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGGTTCACCGTTGTGGT-T
1 TTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTG-CGTCT
* * * *
42048786 TAAATCTTTCCATTTATGCTTCTGAGGTACAAGGTTCACCGTTGCGACTTAAACCTTTCCCTTCA
65 TAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTCCA
* * * *
42048851 TGT-TTCTGAGGTACAAGG
130 TATCTTC-GTGGTACTAGA
* * * ** * * *
42048869 TTCGTCGTTGCGACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTAGATTCGTCGTTGCGACTT
1 TTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGCGTCTT
* * ** * * *
42048934 AAATCTTTCCCATCA---TTCTCATGGTA-TTGGATTCGCCGTTACGGCTTAAATCTTTCCCT--
66 AAATCTTTCCCTTCATGCTTCTGA-GGTACAAGG-TTCGCCGTTGCGACTTAAACCTTTCCCTCC
* * * *
42048993 TTATGCTTCTGGGGTACAAGG
129 ATAT-CTTC-GTGGTACTAGA
*
42049014 TTCGCCATTGCGACTTAAACCTTTCCCTTCA
1 TTCGCCATTGCGACTTAAATCTTTCCCTTCA
42049045 AATTTTCATG
Statistics
Matches: 529, Mismatches: 74, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
143 2 0.00
144 7 0.01
145 85 0.16
146 85 0.16
147 349 0.66
148 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.38
Consensus pattern (147 bp):
TTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTGCGTCTT
AAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTCCAT
ATCTTCGTGGTACTAGA
Found at i:42049110 original size:49 final size:49
Alignment explanation
Indices: 42049063--42049337 Score: 177
Period size: 49 Copynumber: 5.6 Consensus size: 49
42049053 TGGTATCGGG
* * *
42049063 TTCACCGTTGCGACCTCAACCTTTCCCATTTCTTCCTCACGGAATCGGA
1 TTCACCGTTGCGACCTCAACCTTTCCCATTTCATCCTCACGGAACCAGA
** * * *
42049112 TTTGCCGTTGGGGCCTCAATCC-TTCCCATTTCTTCCTCACGGAACCAGA
1 TTCACCGTTGCGACCTCAA-CCTTTCCCATTTCATCCTCACGGAACCAGA
* * * * * * *
42049161 TTTACCGTTGC-AGCCTCAATCTTTTCCATAGT-AT-CTACTAAGGTACCAGG
1 TTCACCGTTGCGA-CCTCAACCTTTCCCAT-TTCATCCT-C-ACGGAACCAGA
* * * * * *
42049211 TTCGCCGTTGCGACCTCAACCTTTCCC--TTCAAATCTTCATGGTACCGGG
1 TTCACCGTTGCGACCTCAACCTTTCCCATTTC--ATCCTCACGGAACCAGA
* * * * *
42049260 TTCGCCGTTGCGGCCTAAACCTTTCCCATTTCATCTTCATGGAACCAGA
1 TTCACCGTTGCGACCTCAACCTTTCCCATTTCATCCTCACGGAACCAGA
* *
42049309 TTTACCGTTGCGGCCTCAATCC-TTCCCAT
1 TTCACCGTTGCGACCTCAA-CCTTTCCCAT
42049338 AATATCTGCT
Statistics
Matches: 180, Mismatches: 32, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
47 1 0.01
48 3 0.02
49 134 0.74
50 37 0.21
51 5 0.03
ACGTcount: A:0.19, C:0.33, G:0.16, T:0.32
Consensus pattern (49 bp):
TTCACCGTTGCGACCTCAACCTTTCCCATTTCATCCTCACGGAACCAGA
Found at i:42049304 original size:148 final size:147
Alignment explanation
Indices: 42049061--42049399 Score: 421
Period size: 148 Copynumber: 2.3 Consensus size: 147
42049051 CATGGTATCG
* * * * * * *
42049061 GGTTCACCGTTGCGACCTCAACCTTTCCCATTTC-TTCCTCACGGAATCGGATTTGCCGTTGGGG
1 GGTTCGCCGTTGCGACCTCAACCTTTCCC--TTCAATCTTCATGGAACCGGATTCGCCGTTGCGG
* * * *
42049125 CCTCAATCCTTCCCATTTCTTCCTCACGGAACCAGATTTACCGTTGCAGCCTCAATCTTTTCCAT
64 CCTCAAACCTTCCCATTTCATCCTCACGGAACCAGATTTACCGTTGCAGCCTCAATCCTTCCCAT
* *
42049190 AGTATCTACTAAGGTACCA
129 AATATCTACTAAGCTACCA
* *
42049209 GGTTCGCCGTTGCGACCTCAACCTTTCCCTTCAAATCTTCATGGTACCGGGTTCGCCGTTGCGGC
1 GGTTCGCCGTTGCGACCTCAACCTTTCCCTTC-AATCTTCATGGAACCGGATTCGCCGTTGCGGC
* * *
42049274 CT-AAACCTTTCCCATTTCATCTTCATGGAACCAGATTTACCGTTGCGGCCTCAATCCTTCCCAT
65 CTCAAACC-TTCCCATTTCATCCTCACGGAACCAGATTTACCGTTGCAGCCTCAATCCTTCCCAT
* *
42049338 AATATCTGCTAAGCTACCG
129 AATATCTACTAAGCTACCA
* *
42049357 GGTTCGCCGTTGCGGCCTTAACCTTTCCCTTCAGATCTTCATG
1 GGTTCGCCGTTGCGACCTCAACCTTTCCCTTCA-ATCTTCATG
42049400 TTTTTCTCAG
Statistics
Matches: 165, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
146 3 0.02
147 5 0.03
148 157 0.95
ACGTcount: A:0.18, C:0.33, G:0.17, T:0.32
Consensus pattern (147 bp):
GGTTCGCCGTTGCGACCTCAACCTTTCCCTTCAATCTTCATGGAACCGGATTCGCCGTTGCGGCC
TCAAACCTTCCCATTTCATCCTCACGGAACCAGATTTACCGTTGCAGCCTCAATCCTTCCCATAA
TATCTACTAAGCTACCA
Found at i:42050355 original size:21 final size:20
Alignment explanation
Indices: 42050309--42050377 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
42050299 CTATTTTTGC
* * * *
42050309 TTTTCTTCTTGTTTTTCCTC
1 TTTTCTTTTTCTTTTTTCTT
42050329 TTTTCTTTTTCTTTTGCTT-TT
1 TTTTCTTTTTCTTTT--TTCTT
*
42050350 TTTTCTTCTTCTTTTTTCTT
1 TTTTCTTTTTCTTTTTTCTT
42050370 TTTTCTTT
1 TTTTCTTT
42050378 GTTCATTGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
19 2 0.05
20 22 0.55
21 15 0.38
22 1 0.03
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (20 bp):
TTTTCTTTTTCTTTTTTCTT
Found at i:42050368 original size:7 final size:7
Alignment explanation
Indices: 42050292--42050377 Score: 61
Period size: 7 Copynumber: 11.6 Consensus size: 7
42050282 CGACCTCTCC
42050292 CTTTTTT
1 CTTTTTT
42050299 CTATTTTT
1 CT-TTTTT
42050307 GCTTTTCTT
1 -CTTTT-TT
42050316 CTTGTTTTT
1 C-T-TTTTT
*
42050325 CCTCTTTT
1 -CTTTTTT
42050333 C-TTTTT
1 CTTTTTT
42050339 CTTTTGCTT
1 CTTTT--TT
42050348 -TTTTTT
1 CTTTTTT
*
42050354 C-TTCTT
1 CTTTTTT
42050360 CTTTTTT
1 CTTTTTT
42050367 CTTTTTT
1 CTTTTTT
42050374 CTTT
1 CTTT
42050378 GTTCATTGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 22
0.71 0.04 0.24
Matches are distributed among these distances:
6 12 0.19
7 21 0.33
8 17 0.27
9 10 0.16
10 4 0.06
ACGTcount: A:0.01, C:0.19, G:0.03, T:0.77
Consensus pattern (7 bp):
CTTTTTT
Found at i:42051264 original size:15 final size:16
Alignment explanation
Indices: 42051234--42051266 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
42051224 TGACTTTTTC
*
42051234 TTCCTTTTCTTTCTTT
1 TTCCTTTTCTTACTTT
42051250 TTCCTTTT-TTACTTT
1 TTCCTTTTCTTACTTT
42051265 TT
1 TT
42051267 ATTGGGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TTCCTTTTCTTACTTT
Found at i:42054514 original size:21 final size:22
Alignment explanation
Indices: 42054468--42054528 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
42054458 TGATCTAAGG
* *
42054468 AAAAATAAAAG-AAACAGAATT
1 AAAAATAAAAGAAAATAGAACT
42054489 AAAAATAAAAGAAAATAGAACT
1 AAAAATAAAAGAAAATAGAACT
*
42054511 AAAAGA-AATAGAAAATAG
1 AAAA-ATAAAAGAAAATAG
42054529 GGAAGTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 11 0.31
22 23 0.66
23 1 0.03
ACGTcount: A:0.72, C:0.03, G:0.11, T:0.13
Consensus pattern (22 bp):
AAAAATAAAAGAAAATAGAACT
Found at i:42054519 original size:15 final size:16
Alignment explanation
Indices: 42054494--42054523 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
42054484 GAATTAAAAA
42054494 TAAAAGAAAATAGAAC
1 TAAAAGAAAATAGAAC
42054510 TAAAAG-AAATAGAA
1 TAAAAGAAAATAGAA
42054524 AATAGGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.03, G:0.13, T:0.13
Consensus pattern (16 bp):
TAAAAGAAAATAGAAC
Found at i:42056526 original size:28 final size:28
Alignment explanation
Indices: 42056477--42056616 Score: 169
Period size: 28 Copynumber: 5.0 Consensus size: 28
42056467 AGATTTAAGT
*
42056477 AATATTCTGAACTCTGGTTCGAAAGAGC
1 AATATTCTGAACTCTGGCTCGAAAGAGC
* *
42056505 AATATTCTGAATTCTAGCTCGAAAGAGC
1 AATATTCTGAACTCTGGCTCGAAAGAGC
* **
42056533 AAAATTCTG-TGTCTGGCTC-AATAGAGC
1 AATATTCTGAACTCTGGCTCGAA-AGAGC
* *
42056560 ATTACTCTGAACTCTGGCTCGAAAGAGC
1 AATATTCTGAACTCTGGCTCGAAAGAGC
42056588 AATATTCTGAACTCTGGCTC-AATAGAGC
1 AATATTCTGAACTCTGGCTCGAA-AGAGC
42056616 A
1 A
42056617 TTACTTTTTA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 20 0.21
28 70 0.74
29 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (28 bp):
AATATTCTGAACTCTGGCTCGAAAGAGC
Found at i:42056569 original size:55 final size:56
Alignment explanation
Indices: 42056480--42056621 Score: 189
Period size: 55 Copynumber: 2.6 Consensus size: 56
42056470 TTTAAGTAAT
* * * *
42056480 ATTCTGAACTCTGGTTCGAA-AGAGCAATATTCTGAATTCTAGCTCGAAAGAGCAAA
1 ATTCTGAACTCTGGCTC-AATAGAGCATTACTCTGAACTCTAGCTCGAAAGAGCAAA
** * *
42056536 ATTCTG-TGTCTGGCTCAATAGAGCATTACTCTGAACTCTGGCTCGAAAGAGCAAT
1 ATTCTGAACTCTGGCTCAATAGAGCATTACTCTGAACTCTAGCTCGAAAGAGCAAA
42056591 ATTCTGAACTCTGGCTCAATAGAGCATTACT
1 ATTCTGAACTCTGGCTCAATAGAGCATTACT
42056622 TTTTATTTGA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
54 2 0.03
55 44 0.59
56 28 0.38
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (56 bp):
ATTCTGAACTCTGGCTCAATAGAGCATTACTCTGAACTCTAGCTCGAAAGAGCAAA
Found at i:42058508 original size:20 final size:21
Alignment explanation
Indices: 42058479--42058522 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
42058469 TTATTTGTAC
42058479 TTTAGAAAATTT-AGTTGCAT
1 TTTAGAAAATTTCAGTTGCAT
* *
42058499 TTTAGGAAATTTCATTTGCAT
1 TTTAGAAAATTTCAGTTGCAT
42058520 TTT
1 TTT
42058523 GGAGCTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.30, C:0.07, G:0.14, T:0.50
Consensus pattern (21 bp):
TTTAGAAAATTTCAGTTGCAT
Found at i:42067660 original size:18 final size:19
Alignment explanation
Indices: 42067621--42067657 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
42067611 AGTAGAAATT
42067621 TTTATTCCAAAAAATAAAA
1 TTTATTCCAAAAAATAAAA
* *
42067640 TTTATTCTAAGAAATAAA
1 TTTATTCCAAAAAATAAA
42067658 TTTCTACTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (19 bp):
TTTATTCCAAAAAATAAAA
Found at i:42069366 original size:25 final size:23
Alignment explanation
Indices: 42069334--42069392 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 23
42069324 ATAATGTTAA
42069334 ATATTAAACTAAA-CTCTTATTTAT
1 ATATTAAA--AAACCTCTTATTTAT
42069358 ATATCTAAAAAAGCCTCTTATTTAT
1 ATAT-TAAAAAA-CCTCTTATTTAT
*
42069383 A-ATAAAAAAA
1 ATATTAAAAAA
42069393 TAATTTTCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 9 0.29
24 6 0.19
25 16 0.52
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (23 bp):
ATATTAAAAAACCTCTTATTTAT
Found at i:42069389 original size:21 final size:24
Alignment explanation
Indices: 42069347--42069391 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
42069337 TTAAACTAAA
42069347 CTCTTATTTATATATCTAAAAAAGC
1 CTCTTATTTATATA-CTAAAAAAGC
42069372 CTCTTATTTATA-A-TAAAAAA
1 CTCTTATTTATATACTAAAAAA
42069392 ATAATTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
24 1 0.05
25 12 0.60
ACGTcount: A:0.44, C:0.13, G:0.02, T:0.40
Consensus pattern (24 bp):
CTCTTATTTATATACTAAAAAAGC
Found at i:42074677 original size:31 final size:30
Alignment explanation
Indices: 42074638--42074696 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
42074628 CTTACTTTTA
42074638 TTTTATTGAACTTTACTACTAAAA-TTCGAG
1 TTTTATTGAACTTTACTAC-AAAAGTTCGAG
* *
42074668 TTTTGATTGAATTTTGCTACAAAAGTTCG
1 TTTT-ATTGAACTTTACTACAAAAGTTCG
42074697 TGAGTAAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.44
Consensus pattern (30 bp):
TTTTATTGAACTTTACTACAAAAGTTCGAG
Found at i:42078527 original size:20 final size:20
Alignment explanation
Indices: 42078504--42078552 Score: 53
Period size: 24 Copynumber: 2.2 Consensus size: 20
42078494 TGAGAAATAA
42078504 TATTTCAATTAAACTCTGTT
1 TATTTCAATTAAACTCTGTT
*
42078524 TATTTGTTTTAATTAAACTCTGTT
1 TA----TTTCAATTAAACTCTGTT
42078548 TATTT
1 TATTT
42078553 GTTTGAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 8
0.73 0.03 0.24
Matches are distributed among these distances:
20 5 0.21
24 19 0.79
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.57
Consensus pattern (20 bp):
TATTTCAATTAAACTCTGTT
Found at i:42078542 original size:24 final size:24
Alignment explanation
Indices: 42078510--42078556 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
42078500 ATAATATTTC
42078510 AATTAAACTCTGTTTATTTGTTTT
1 AATTAAACTCTGTTTATTTGTTTT
42078534 AATTAAACTCTGTTTATTTGTTT
1 AATTAAACTCTGTTTATTTGTTT
42078557 GAGTCAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.57
Consensus pattern (24 bp):
AATTAAACTCTGTTTATTTGTTTT
Found at i:42078565 original size:24 final size:24
Alignment explanation
Indices: 42078514--42078568 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
42078504 TATTTCAATT
* *
42078514 AAACTCTGTTTATTTGTTTTAATT
1 AAACTCTGTTTATTTGTTTGAATC
*
42078538 AAACTCTGTTTATTTGTTTGAGTC
1 AAACTCTGTTTATTTGTTTGAATC
42078562 AAACTCT
1 AAACTCT
42078569 TATTACTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (24 bp):
AAACTCTGTTTATTTGTTTGAATC
Found at i:42080463 original size:24 final size:24
Alignment explanation
Indices: 42080430--42080478 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
42080420 TAAGAAATAA
42080430 TATTTCAATTAAACTCTGTTTATT
1 TATTTCAATTAAACTCTGTTTATT
*
42080454 TATTTTAATTAAACTCTGTTTATT
1 TATTTCAATTAAACTCTGTTTATT
42080478 T
1 T
42080479 GTTTGAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.57
Consensus pattern (24 bp):
TATTTCAATTAAACTCTGTTTATT
Found at i:42080491 original size:24 final size:24
Alignment explanation
Indices: 42080430--42080494 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
42080420 TAAGAAATAA
* *
42080430 TATTTCAATTAAACTCTGTTTATT
1 TATTTGAATCAAACTCTGTTTATT
* *
42080454 TATTTTAATTAAACTCTGTTTATT
1 TATTTGAATCAAACTCTGTTTATT
* *
42080478 TGTTTGAGTCAAACTCT
1 TATTTGAATCAAACTCT
42080495 TATTACTCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (24 bp):
TATTTGAATCAAACTCTGTTTATT
Found at i:42082129 original size:19 final size:20
Alignment explanation
Indices: 42082090--42082130 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
42082080 GATGGGTAAG
*
42082090 ATCATTTTCACTAAATCTGC
1 ATCATTTTCACGAAATCTGC
*
42082110 ATCATTTT-ACGAAATGTGC
1 ATCATTTTCACGAAATCTGC
42082129 AT
1 AT
42082131 TGACATGATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (20 bp):
ATCATTTTCACGAAATCTGC
Found at i:42082384 original size:8 final size:8
Alignment explanation
Indices: 42082371--42082409 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
42082361 AATTAAATTT
42082371 TATTTTGA
1 TATTTTGA
42082379 TATTTTGA
1 TATTTTGA
*
42082387 CATTTTTGA
1 TA-TTTTGA
42082396 TATTTTGA
1 TATTTTGA
42082404 TATTTT
1 TATTTT
42082410 CATACTTTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (8 bp):
TATTTTGA
Found at i:42082395 original size:17 final size:17
Alignment explanation
Indices: 42082373--42082409 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
42082363 TTAAATTTTA
42082373 TTTTGATATTTTGACAT
1 TTTTGATATTTTGACAT
*
42082390 TTTTGATATTTTGATAT
1 TTTTGATATTTTGACAT
42082407 TTT
1 TTT
42082410 CATACTTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.65
Consensus pattern (17 bp):
TTTTGATATTTTGACAT
Found at i:42086273 original size:16 final size:16
Alignment explanation
Indices: 42086223--42086276 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
42086213 TTTGGTTCGC
* *
42086223 TGTAATGGAATAGAAC
1 TGTAATGGAATAGGAT
* *
42086239 CGTAATGAAATA-GAGT
1 TGTAATGGAATAGGA-T
42086255 TGTAATGGAATAGGAT
1 TGTAATGGAATAGGAT
42086271 TGTAAT
1 TGTAAT
42086277 CAGTATTTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
15 1 0.03
16 27 0.90
17 2 0.07
ACGTcount: A:0.41, C:0.04, G:0.26, T:0.30
Consensus pattern (16 bp):
TGTAATGGAATAGGAT
Found at i:42086585 original size:39 final size:38
Alignment explanation
Indices: 42086511--42086587 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 38
42086501 TTTTAACTTG
* * *
42086511 ATTATTATTAAATACAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAAGTCATAATATA
*
42086549 ATTATTATTAAAATATGAA-TTAATAAAAGTCATAATATA
1 ATTATTATT-AAATA-CAATTTAATAAAAGTCATAATATA
42086588 TAATATTAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 9 0.27
39 22 0.67
40 2 0.06
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.42
Consensus pattern (38 bp):
ATTATTATTAAATACAATTTAATAAAAGTCATAATATA
Found at i:42092127 original size:21 final size:20
Alignment explanation
Indices: 42092085--42092128 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
42092075 TTTTTAAGAC
** *
42092085 TTTTAGTTAATTTTGAATTT
1 TTTTAGTTAATTTACAAATT
42092105 TTTTAGTTGAATTTACAAATT
1 TTTTAGTT-AATTTACAAATT
42092126 TTT
1 TTT
42092129 ATTGTAAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.27, C:0.02, G:0.09, T:0.61
Consensus pattern (20 bp):
TTTTAGTTAATTTACAAATT
Found at i:42093650 original size:25 final size:26
Alignment explanation
Indices: 42093580--42093644 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
42093570 AATTTAGTAG
42093580 TTAGTAGGTGAAAGATCAAGAGTTTT
1 TTAGTAGGTGAAAGATCAAGAGTTTT
*
42093606 TTAGTAGATGAAAGATCAAGAG-TTT
1 TTAGTAGGTGAAAGATCAAGAGTTTT
42093631 TTAGTAGGTGAAAG
1 TTAGTAGGTGAAAG
42093645 GCCAAGGGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
25 16 0.43
26 21 0.57
ACGTcount: A:0.37, C:0.03, G:0.28, T:0.32
Consensus pattern (26 bp):
TTAGTAGGTGAAAGATCAAGAGTTTT
Found at i:42098002 original size:25 final size:26
Alignment explanation
Indices: 42097932--42097996 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
42097922 AATTTAGTAG
42097932 TTAGTAGGTGAAAGATCAAGAGTTTT
1 TTAGTAGGTGAAAGATCAAGAGTTTT
*
42097958 TTAGTAGATGAAAGATCAAGAG-TTT
1 TTAGTAGGTGAAAGATCAAGAGTTTT
42097983 TTAGTAGGTGAAAG
1 TTAGTAGGTGAAAG
42097997 GCCAAGGGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
25 16 0.43
26 21 0.57
ACGTcount: A:0.37, C:0.03, G:0.28, T:0.32
Consensus pattern (26 bp):
TTAGTAGGTGAAAGATCAAGAGTTTT
Found at i:42105788 original size:78 final size:78
Alignment explanation
Indices: 42105659--42105809 Score: 284
Period size: 78 Copynumber: 1.9 Consensus size: 78
42105649 AGATAGAAAC
*
42105659 TTTGTATTAGACTGGAACTTGATGAACTCAAGACCCTATACCAGTTCAATTGATGAAACAAAACT
1 TTTGTATTAGACAGGAACTTGATGAACTCAAGACCCTATACCAGTTCAATTGATGAAACAAAACT
42105724 TTGGCATAAAAGA
66 TTGGCATAAAAGA
*
42105737 TTTGTATTAGACAGGAACTTGATGAACTCAAGACCTTATACCAGTTCAATTGATGAAACAAAACT
1 TTTGTATTAGACAGGAACTTGATGAACTCAAGACCCTATACCAGTTCAATTGATGAAACAAAACT
42105802 TTGGCATA
66 TTGGCATA
42105810 GAATATTGGG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (78 bp):
TTTGTATTAGACAGGAACTTGATGAACTCAAGACCCTATACCAGTTCAATTGATGAAACAAAACT
TTGGCATAAAAGA
Found at i:42118977 original size:24 final size:25
Alignment explanation
Indices: 42118926--42118978 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
42118916 TGATCAATTC
* *
42118926 AAAGCAAAAAAAAAAATTTATTACA
1 AAAGAAAAAAAAAAAATATATTACA
42118951 AAAGAAAAAGAAAAAAATAT-TTA-A
1 AAAGAAAAA-AAAAAAATATATTACA
42118975 AAAG
1 AAAG
42118979 TTATATAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 11 0.44
26 9 0.36
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.17
Consensus pattern (25 bp):
AAAGAAAAAAAAAAAATATATTACA
Found at i:42122519 original size:7 final size:6
Alignment explanation
Indices: 42122496--42122615 Score: 136
Period size: 6 Copynumber: 19.7 Consensus size: 6
42122486 AGTGCATAAT
*
42122496 AAAATA AAAAT- AAAATGG AAAATG AAAAATG AAAAATG AAAAATG AAAATG
1 AAAATG AAAATG AAAAT-G AAAATG -AAAATG -AAAATG -AAAATG AAAATG
* * *
42122547 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATA AAAATA AAAATA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
* *
42122595 AAAATA AAAATA AAAAT- AAAA
1 AAAATG AAAATG AAAATG AAAA
42122616 AAAATGCACT
Statistics
Matches: 110, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
5 9 0.08
6 76 0.69
7 25 0.23
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:42122678 original size:19 final size:19
Alignment explanation
Indices: 42122638--42122680 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
42122628 TTTTTTGAAA
*
42122638 TTTTCAATTTTTGTTAATT
1 TTTTCAATTTTTCTTAATT
*
42122657 TTTTCGAATTTTTCTTCATT
1 TTTTC-AATTTTTCTTAATT
42122677 TTTT
1 TTTT
42122681 TTTAAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.16, C:0.09, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTCAATTTTTCTTAATT
Found at i:42125830 original size:20 final size:18
Alignment explanation
Indices: 42125805--42125862 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 18
42125795 TTAAAAATAT
42125805 AAAAAATTTAAAAGAAAGAC
1 AAAAAATTTAAAA-AAA-AC
* *
42125825 AAAAAATATGAAAAAAAAT
1 AAAAAAT-TTAAAAAAAAC
42125844 AAAAATATTTAAAATAAAA
1 AAAAA-ATTTAAAA-AAAA
42125863 GATAAGATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 11 0.34
20 16 0.50
21 5 0.16
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (18 bp):
AAAAAATTTAAAAAAAAC
Found at i:42126089 original size:19 final size:19
Alignment explanation
Indices: 42126058--42126095 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
42126048 GGTTGATCCG
42126058 TTTTTTATATATTT-TTTA
1 TTTTTTATATATTTGTTTA
*
42126076 TTTTTTAATTTATTTGTTTA
1 TTTTTT-ATATATTTGTTTA
42126096 AATCAATCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (19 bp):
TTTTTTATATATTTGTTTA
Found at i:42128614 original size:16 final size:17
Alignment explanation
Indices: 42128581--42128618 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
42128571 CTCCACCTTG
*
42128581 ACAAGAATTCTCTACGA
1 ACAAGAACTCTCTACGA
42128598 ACAAGAACTCT-TACGA
1 ACAAGAACTCTCTACGA
42128614 ACAAG
1 ACAAG
42128619 TTCTCCACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.45, C:0.24, G:0.13, T:0.18
Consensus pattern (17 bp):
ACAAGAACTCTCTACGA
Found at i:42144299 original size:33 final size:33
Alignment explanation
Indices: 42144257--42144322 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
42144247 TGAAAAAAAG
*
42144257 AGAGACCAAGTGACTAAACTTCTTGATCTTAAA
1 AGAGACCAAGTGACTAAACATCTTGATCTTAAA
*
42144290 AGAGCCCAAGTGACTAAACATCTTGATCTTAAA
1 AGAGACCAAGTGACTAAACATCTTGATCTTAAA
42144323 GAAGCAGCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (33 bp):
AGAGACCAAGTGACTAAACATCTTGATCTTAAA
Found at i:42150001 original size:24 final size:26
Alignment explanation
Indices: 42149960--42150011 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
42149950 AAAGAAATTA
42149960 AAAATATGGAAAAAATA-TTTAAAAAT
1 AAAATAT-GAAAAAATATTTTAAAAAT
*
42149986 AAAATAT-AAAATATATTTTAAAAAT
1 AAAATATGAAAAAATATTTTAAAAAT
42150011 A
1 A
42150012 TAAGAAACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 7 0.29
25 10 0.42
26 7 0.29
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (26 bp):
AAAATATGAAAAAATATTTTAAAAAT
Found at i:42164726 original size:14 final size:14
Alignment explanation
Indices: 42164707--42164734 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
42164697 GAGAGGTTGG
42164707 TTTGACAAGTTGAA
1 TTTGACAAGTTGAA
42164721 TTTGACAAGTTGAA
1 TTTGACAAGTTGAA
42164735 ATCTTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
TTTGACAAGTTGAA
Found at i:42167229 original size:23 final size:23
Alignment explanation
Indices: 42167199--42167297 Score: 92
Period size: 23 Copynumber: 4.2 Consensus size: 23
42167189 CAAAATACTG
42167199 AGCACACAAAGTGCTAATCAGAA
1 AGCACACAAAGTGCTAATCAGAA
* * *
42167222 AGCACACAAAGTGCTAATAATAG
1 AGCACACAAAGTGCTAATCAGAA
* * * *
42167245 AGAACACGAGACGTGCTAATCGGAG
1 AGCACAC-A-AAGTGCTAATCAGAA
*
42167270 AGCACACACAGTGCTAATC-GAA
1 AGCACACAAAGTGCTAATCAGAA
42167292 GAGCAC
1 -AGCAC
42167298 GCTAAGGTCT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
22 2 0.03
23 40 0.66
24 2 0.03
25 17 0.28
ACGTcount: A:0.42, C:0.22, G:0.22, T:0.13
Consensus pattern (23 bp):
AGCACACAAAGTGCTAATCAGAA
Found at i:42168505 original size:13 final size:13
Alignment explanation
Indices: 42168487--42168516 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
42168477 TTTATGCTCT
42168487 TTAACACTCCAAA
1 TTAACACTCCAAA
42168500 TTAACACTCCAAA
1 TTAACACTCCAAA
42168513 TTAA
1 TTAA
42168517 ACTTTACAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.27
Consensus pattern (13 bp):
TTAACACTCCAAA
Found at i:42180082 original size:33 final size:33
Alignment explanation
Indices: 42180038--42180103 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
42180028 GAAAAAAAAG
*
42180038 AGAGACCAAGTGACTAAACTTCTTGATCTTAAA
1 AGAGACCAAGTGACTAAACATCTTGATCTTAAA
*
42180071 AGAGCCCAAGTGACTAAACATCTTGATCTTAAA
1 AGAGACCAAGTGACTAAACATCTTGATCTTAAA
42180104 GAAGCAGCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (33 bp):
AGAGACCAAGTGACTAAACATCTTGATCTTAAA
Found at i:42185468 original size:26 final size:26
Alignment explanation
Indices: 42185439--42185491 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
42185429 AAAGAAATTA
42185439 AAAATATGGAAAAA-ATA-TTTAAAAAT
1 AAAATAT--AAAAATATATTTTAAAAAT
42185465 AAAATATAAAAATATATTTTAAAAAT
1 AAAATATAAAAATATATTTTAAAAAT
42185491 A
1 A
42185492 TAAGAAACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.20
25 3 0.12
26 17 0.68
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (26 bp):
AAAATATAAAAATATATTTTAAAAAT
Found at i:42204336 original size:19 final size:21
Alignment explanation
Indices: 42204199--42204370 Score: 129
Period size: 22 Copynumber: 7.9 Consensus size: 21
42204189 ACAAAATACT
*
42204199 GAGCACACAAAGTGCTCATCAGA
1 GAGCACAC--AGTGCTAATCAGA
*
42204222 AAGCACACGAAGTGCTAATAACAGA
1 GAGCACAC--AGTGCTAAT--CAGA
* *
42204247 GA-CACGAGACGTGCTAA-CGGA
1 GAGCAC-ACA-GTGCTAATCAGA
* *
42204268 GAGCACACACAGTGCTAAACGGA
1 GAG--CACACAGTGCTAATCAGA
*
42204291 AAGACACACAGTGCTAATCAGA
1 GAG-CACACAGTGCTAATCAGA
*
42204313 AAGCACACAGTGC-AATC-GA
1 GAGCACACAGTGCTAATCAGA
42204332 GAGCACAC-GTGCTAATCAGA
1 GAGCACACAGTGCTAATCAGA
42204352 GAGCACACCAGTGCTAATC
1 GAGCACA-CAGTGCTAATC
42204371 GAAGAGTACG
Statistics
Matches: 126, Mismatches: 11, Indels: 25
0.78 0.07 0.15
Matches are distributed among these distances:
18 4 0.03
19 13 0.10
20 13 0.10
21 16 0.13
22 36 0.29
23 25 0.20
24 13 0.10
25 6 0.05
ACGTcount: A:0.40, C:0.25, G:0.23, T:0.12
Consensus pattern (21 bp):
GAGCACACAGTGCTAATCAGA
Found at i:42204349 original size:39 final size:42
Alignment explanation
Indices: 42204199--42204372 Score: 142
Period size: 46 Copynumber: 4.0 Consensus size: 42
42204189 ACAAAATACT
* *
42204199 GAGCACACAAAGTGCTCATCAGAAAGCACACGAAGTGCTAATAAC-A
1 GAGCACAC--AGTGCTAATCAGAAAGCACAC-CAGTGCTAAT--CGA
* * * *
42204245 GAGACACGAGACGTGCTAA-CGGAGAGCACACACAGTGCTAAACGGA
1 GAG-CAC-ACA-GTGCTAATCAGAAAGCACAC-CAGTGCTAATC-GA
*
42204291 AAGACACACAGTGCTAATCAGAAAGCACA-CAGTGC-AATCGA
1 GAG-CACACAGTGCTAATCAGAAAGCACACCAGTGCTAATCGA
*
42204332 GAGCACAC-GTGCTAATCAGAGAGCACACCAGTGCTAATCGA
1 GAGCACACAGTGCTAATCAGAAAGCACACCAGTGCTAATCGA
42204373 AGAGTACGCT
Statistics
Matches: 106, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
39 18 0.17
40 11 0.10
41 10 0.09
42 3 0.03
43 6 0.06
44 8 0.08
45 11 0.10
46 29 0.27
47 9 0.08
48 1 0.01
ACGTcount: A:0.40, C:0.25, G:0.24, T:0.12
Consensus pattern (42 bp):
GAGCACACAGTGCTAATCAGAAAGCACACCAGTGCTAATCGA
Found at i:42205588 original size:13 final size:13
Alignment explanation
Indices: 42205570--42205595 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
42205560 TTTATGCTCT
42205570 TTAACACTCCAAA
1 TTAACACTCCAAA
42205583 TTAACACTCCAAA
1 TTAACACTCCAAA
42205596 ATAAACTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (13 bp):
TTAACACTCCAAA
Found at i:42212339 original size:27 final size:27
Alignment explanation
Indices: 42212309--42212369 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
42212299 TTTGAATTGA
*
42212309 TTTTAAATTTATTTAAATTTA-AACTTG
1 TTTTAAATTTATTTAAATTTAGAA-TAG
42212336 TTTTAAATTTATTTAAATTTAGAATAG
1 TTTTAAATTTATTTAAATTTAGAATAG
42212363 TTTTAAA
1 TTTTAAA
42212370 CTTAAAATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 30 0.94
28 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (27 bp):
TTTTAAATTTATTTAAATTTAGAATAG
Found at i:42214239 original size:28 final size:29
Alignment explanation
Indices: 42214204--42214276 Score: 112
Period size: 28 Copynumber: 2.5 Consensus size: 29
42214194 CTAACTGTCC
*
42214204 AAAAATTACATTTTGACC-CAAAACTTCA
1 AAAAATTACATTTTAACCTCAAAACTTCA
*
42214232 AAAAATTACATTTTAACCTCAAAACTTCT
1 AAAAATTACATTTTAACCTCAAAACTTCA
42214261 AAAAATTACCATTTTA
1 AAAAATTA-CATTTTA
42214277 CTCCTAAACT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 17 0.41
29 17 0.41
30 7 0.17
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (29 bp):
AAAAATTACATTTTAACCTCAAAACTTCA
Found at i:42214408 original size:29 final size:28
Alignment explanation
Indices: 42214262--42214475 Score: 115
Period size: 29 Copynumber: 7.5 Consensus size: 28
42214252 AAAACTTCTA
*
42214262 AAAATTACCATTTTACTCCTAAACTTTCC
1 AAAATTACCATTTTACCCCTAAA-TTTCC
* *
42214291 AAAA-T-CCATTTTAACCC--GATTTCACC
1 AAAATTACCATTTTACCCCTAAATTT--CC
**
42214317 AAAAATTACCATTTTACCCC-AAATTTTG
1 -AAAATTACCATTTTACCCCTAAATTTCC
* **
42214345 AAAA-T-CTCATTTTTAACCC-GGATTTCATC
1 AAAATTAC-CA-TTTTACCCCTAAATTTC--C
42214374 GAAAATTACCATTTTACCCCTAAACTTTCC
1 -AAAATTACCATTTTACCCCTAAA-TTTCC
* * * *
42214404 AAAATT-CTATTTTTCACCCTGATTTTACC
1 AAAATTACCATTTTAC-CCCTAAATTT-CC
42214433 AAAAATTACCATTTTACCCCTAAATCTTCC
1 -AAAATTACCATTTTACCCCTAAAT-TTCC
*
42214463 AAAA-TCCCATTTT
1 AAAATTACCATTTT
42214476 TAACCCCCAA
Statistics
Matches: 141, Mismatches: 24, Indels: 41
0.68 0.12 0.20
Matches are distributed among these distances:
24 3 0.02
25 2 0.01
26 5 0.04
27 30 0.21
28 20 0.14
29 32 0.23
30 31 0.22
31 13 0.09
32 5 0.04
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCTAAATTTCC
Found at i:42214438 original size:59 final size:56
Alignment explanation
Indices: 42214261--42214481 Score: 284
Period size: 59 Copynumber: 3.8 Consensus size: 56
42214251 CAAAACTTCT
*
42214261 AAAAATTACCATTTTACTCCTAAACTTTCCAAAATCCA-TTTTAACCCGATTTCACC
1 AAAAATTACCATTTTACCCCTAAA-TTTCCAAAATCCATTTTTAACCCGATTTCACC
** *
42214317 AAAAATTACCATTTTACCCC-AAATTTTGAAAATCTCATTTTTAACCCGGATTTCATC
1 AAAAATTACCATTTTACCCCTAAATTTCCAAAATC-CATTTTTAACCC-GATTTCACC
* * * *
42214374 GAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCTATTTTTCACCCTGATTTTACC
1 AAAAATTACCATTTTACCCCTAAA-TTTCCAAAA-TCCATTTTTAACCC-GATTTCACC
42214433 AAAAATTACCATTTTACCCCTAAATCTTCCAAAATCCCATTTTTAACCC
1 AAAAATTACCATTTTACCCCTAAAT-TTCCAAAAT-CCATTTTTAACCC
42214482 CCAATTATCC
Statistics
Matches: 142, Mismatches: 15, Indels: 13
0.84 0.09 0.08
Matches are distributed among these distances:
54 9 0.06
55 5 0.04
56 28 0.20
57 27 0.19
58 5 0.04
59 66 0.46
60 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (56 bp):
AAAAATTACCATTTTACCCCTAAATTTCCAAAATCCATTTTTAACCCGATTTCACC
Found at i:42216487 original size:19 final size:21
Alignment explanation
Indices: 42216450--42216492 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
42216440 ATTTTTATAA
*
42216450 TTTTTTAATATTTTCTTTTTC
1 TTTTTTAATATATTCTTTTTC
42216471 TTTTTTAATA-ATT-TTTTTC
1 TTTTTTAATATATTCTTTTTC
42216490 TTT
1 TTT
42216493 GAACCGATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 2 0.10
21 10 0.48
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTTTAATATATTCTTTTTC
Found at i:42218781 original size:19 final size:20
Alignment explanation
Indices: 42218740--42218782 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
42218730 TGATCTCAAG
**
42218740 ATTTGCTTTCGATAGTTGCT
1 ATTTGCTTTCGATAGCGGCT
*
42218760 ATTTG-TTTCGATAGCGGTT
1 ATTTGCTTTCGATAGCGGCT
42218779 ATTT
1 ATTT
42218783 TAAATTGGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.16, C:0.12, G:0.21, T:0.51
Consensus pattern (20 bp):
ATTTGCTTTCGATAGCGGCT
Found at i:42223501 original size:16 final size:16
Alignment explanation
Indices: 42223456--42223578 Score: 66
Period size: 17 Copynumber: 6.9 Consensus size: 16
42223446 GCCCTTTCTT
*
42223456 AATTTATTTTAAAATTA
1 AATTTA-TTTAAATTTA
*
42223473 AATTTGATATAAATTTA
1 AATTT-ATTTAAATTTA
* *
42223490 GATTTATTTAAATTTT
1 AATTTATTTAAATTTA
*
42223506 AATTTAAATTAAACTTTA
1 AATTT-ATTTAAA-TTTA
*
42223524 AATTTGAATTTAATTTGAGTCTA
1 AATTT--ATTTAA----A-TTTA
42223547 AATTTATTTTAAATTTAA
1 AATTTA-TTTAAATTT-A
*
42223565 AATTAATTTAAATT
1 AATTTATTTAAATT
42223579 AAAGTCCAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
16 13 0.16
17 33 0.40
18 16 0.19
19 6 0.07
21 1 0.01
22 5 0.06
23 9 0.11
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (16 bp):
AATTTATTTAAATTTA
Found at i:42223504 original size:6 final size:6
Alignment explanation
Indices: 42223463--42223578 Score: 75
Period size: 6 Copynumber: 20.3 Consensus size: 6
42223453 CTTAATTTAT
* * * * *
42223463 TTTAAA ATTAAA TTT-GA TATAAA TTTAGA TTT--A TTTAAA TTTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * * * *
42223508 TTTAAA -TTAAA CTTTAAA TTTGAA TTT-AA TTTGAG TCTAAA TTT-AT
1 TTTAAA TTTAAA -TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
42223554 TTTAAA TTTAAA ATT-AA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TT
42223579 AAAGTCCAAA
Statistics
Matches: 83, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
4 4 0.05
5 21 0.25
6 53 0.64
7 5 0.06
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:42223563 original size:11 final size:11
Alignment explanation
Indices: 42223484--42223564 Score: 67
Period size: 11 Copynumber: 7.2 Consensus size: 11
42223474 ATTTGATATA
*
42223484 AATTTAGATTT
1 AATTTAAATTT
42223495 -ATTTAAATTTT
1 AATTTAAA-TTT
*
42223506 AATTTAAATTA
1 AATTTAAATTT
42223517 AACTTTAAATTT
1 AA-TTTAAATTT
42223529 GAATTT-AATTT
1 -AATTTAAATTT
* *
42223540 GAGTCTAAATTT
1 -AATTTAAATTT
*
42223552 ATTTTAAATTT
1 AATTTAAATTT
42223563 AA
1 AA
42223565 AATTAATTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
10 6 0.11
11 26 0.46
12 23 0.40
13 2 0.04
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:42224386 original size:3 final size:3
Alignment explanation
Indices: 42224378--42224411 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
42224368 TATTAATAAC
42224378 ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
42224412 TTTTTTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:42225408 original size:29 final size:28
Alignment explanation
Indices: 42225378--42225772 Score: 222
Period size: 29 Copynumber: 13.6 Consensus size: 28
42225368 GGACTGTCCA
*
42225378 AAAATTATCATTTTACCCCAAACTTCCC
1 AAAATTACCATTTTACCCCAAACTTCCC
* *
42225406 AAAATT-CCATTTTTAACCCC-GATTTCACC
1 AAAATTACCA-TTTT-ACCCCAAACTTC-CC
* * *
42225435 AAGAATGACCATTTTACCCCGAACTTTCC
1 AA-AATTACCATTTTACCCCAAACTTCCC
* **
42225464 AAAATT-CCATTTTTAACCCGGACTTCACC
1 AAAATTACCA-TTTTACCCCAAACTTC-CC
*
42225493 AAAAATTACCATTTTACCCTAAACTTCCC
1 -AAAATTACCATTTTACCCCAAACTTCCC
* *
42225522 AAAATT-TCATTTTTAACCCC-AATTTCACC
1 AAAATTACCA-TTTT-ACCCCAAACTTC-CC
* *
42225551 AAAATGACCATTTTACCCCTAAACTTTCC
1 AAAATTACCATTTTACCCC-AAACTTCCC
* * *
42225580 AAAATT-CCATTTTTAAACCC-GATTTCACC
1 AAAATTACCA-TTTT-ACCCCAAACTTC-CC
*
42225609 AAAAATTACCATTTTACCCCTAAACTTTCC
1 -AAAATTACCATTTTACCCC-AAACTTCCC
* *
42225639 AAAATT-CCATTTTTAACCCC-GATTTCACC
1 AAAATTACCA-TTTT-ACCCCAAACTTC-CC
* * *
42225668 AGAATTGCCATTTTACCCCCAAACTTTCC
1 AAAATTACCATTTTA-CCCCAAACTTCCC
*
42225697 AAAATT-CCATTTTCGACCCC-AATTTCACC
1 AAAATTACCATTTT--ACCCCAAACTTC-CC
* * *
42225726 AAAAATTACCATTTTGCCCCTGTAA-GT-CC
1 -AAAATTACCATTTTACCCC--AAACTTCCC
42225755 AAAATTACCATTTTACCC
1 AAAATTACCATTTTACCC
42225773 TCGAGTATCC
Statistics
Matches: 286, Mismatches: 44, Indels: 74
0.71 0.11 0.18
Matches are distributed among these distances:
27 7 0.02
28 91 0.32
29 98 0.34
30 68 0.24
31 20 0.07
32 2 0.01
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCAAACTTCCC
Found at i:42225451 original size:58 final size:58
Alignment explanation
Indices: 42225375--42225745 Score: 512
Period size: 58 Copynumber: 6.4 Consensus size: 58
42225365 CTTGGACTGT
* * *
42225375 CCAAAAATTATCATTTTACCCCAAACTTCCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATGACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * *
42225433 CCAAGAATGACCATTTTACCCCGAACTTTCCAAAATTCCATTTTTAACCCGGACTTCA
1 CCAAAAATGACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * *
42225491 CCAAAAATTACCATTTTACCCTAAACTTCCCAAAATTTCATTTTTAACCCCAATTTCA
1 CCAAAAATGACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
*
42225549 CC-AAAATGACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAAACCCGATTTCA
1 CCAAAAATGACCATTTTACCCC-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
*
42225607 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATGACCATTTTACCCC-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * ** *
42225666 CCAGAATTG-CCATTTTACCCCCAAACTTTCCAAAATTCCATTTTCGACCCCAATTTCA
1 CCAAAAATGACCATTTTA-CCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
42225724 CCAAAAATTACCATTTTGCCCC
1 CCAAAAATGACCATTTTACCCC
42225746 TGTAAGTCCA
Statistics
Matches: 275, Mismatches: 34, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
57 17 0.06
58 187 0.68
59 71 0.26
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (58 bp):
CCAAAAATGACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:42225679 original size:117 final size:115
Alignment explanation
Indices: 42225375--42225746 Score: 561
Period size: 117 Copynumber: 3.2 Consensus size: 115
42225365 CTTGGACTGT
*
42225375 CCAAAAATTATCATTTTACCCC-AAACTTCCCAAAATTCCATTTTTAACCCCGATTTCACCAAGA
1 CCAAAAATTACCATTTTACCCCTAAACTTCCCAAAATTCCATTTTTAACCCCGATTTCACC-AGA
* *
42225439 ATGACCATTTTACCCCGAACTTTCCAAAATTCCATTTTTAACCCGGACTTCA
65 ATGACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCC-GATTTCA
* * *
42225491 CCAAAAATTACCATTTTA-CCCTAAACTTCCCAAAATTTCATTTTTAACCCCAATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCCTAAACTTCCCAAAATTCCATTTTTAACCCCGATTTCACCAGAA
42225555 TGACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAAACCCGATTTCA
66 TGACCATTTTACCCC-AAACTTTCCAAAATTCCATTTTT-AACCCGATTTCA
*
42225607 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAGAA
1 CCAAAAATTACCATTTTACCCCTAAACTTCCCAAAATTCCATTTTTAACCCCGATTTCACCAGAA
* * *
42225672 TTG-CCATTTTACCCCCAAACTTTCCAAAATTCCATTTTCGACCCCAATTTCA
66 -TGACCATTTTA-CCCCAAACTTTCCAAAATTCCATTTT-TAACCCGATTTCA
*
42225724 CCAAAAATTACCATTTTGCCCCT
1 CCAAAAATTACCATTTTACCCCT
42225747 GTAAGTCCAA
Statistics
Matches: 235, Mismatches: 14, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
115 21 0.09
116 99 0.42
117 109 0.46
118 6 0.03
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.32
Consensus pattern (115 bp):
CCAAAAATTACCATTTTACCCCTAAACTTCCCAAAATTCCATTTTTAACCCCGATTTCACCAGAA
TGACCATTTTACCCCAAACTTTCCAAAATTCCATTTTTAACCCGATTTCA
Found at i:42225803 original size:117 final size:115
Alignment explanation
Indices: 42225375--42225796 Score: 414
Period size: 116 Copynumber: 3.6 Consensus size: 115
42225365 CTTGGACTGT
* * *
42225375 CCAAAAATTATCATTTTACCCC-AAACTTCCCAAAATTCCATTTTTAACCCCGATTTCACCAAGA
1 CCAAAAATTACCATTTTACCCCTAAACGT-CCAAAATTCCATTTTTAACCCCGATAT-ACCAA-A
* * * * *
42225439 A-TGACCATTTTA-CCCCGAACTTTCCAAAATTCCATTTT-TAACCCGGACTTCA
63 AGT-CCCATTTTACCCCCAAACTTTCCAAAATTCCATTTTCAAACCC-AATTTCA
* * * *
42225491 CCAAAAATTACCATTTTA-CCCTAAACTTCCCAAAATTTCATTTTTAACCCCAATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCCTAAACGT-CCAAAATTCCATTTTTAACCCCGATAT-ACCAAAA
* * * *
42225555 -TGACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAAACCCGATTTCA
64 GT-CCCATTTTACCCCCAAACTTTCCAAAATTCCATTTTCAAACCCAATTTCA
* * *
42225607 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAGAA
1 CCAAAAATTACCATTTTACCCCTAAAC-GTCCAAAATTCCATTTTTAACCCCGATAT-ACCAAAA
* * * *
42225672 TTGCCATTTTACCCCCAAACTTTCCAAAATTCCATTTTCGACCCCAATTTCA
64 GTCCCATTTTACCCCCAAACTTTCCAAAATTCCATTTTCAAACCCAATTTCA
* *
42225724 CCAAAAATTACCATTTTGCCCCTGTAA-GTCCAAAATTACCA-TTTT-ACCCTCGAGTAT-CCAA
1 CCAAAAATTACCATTTTACCCCT-AAACGTCCAAAATT-CCATTTTTAACCC-CGA-TATACCAA
*
42225785 AAGTCCCGTTTT
62 AAGTCCCATTTT
42225797 CAACCCCGAT
Statistics
Matches: 272, Mismatches: 24, Indels: 21
0.86 0.08 0.07
Matches are distributed among these distances:
115 32 0.12
116 119 0.44
117 116 0.43
118 5 0.02
ACGTcount: A:0.33, C:0.31, G:0.05, T:0.32
Consensus pattern (115 bp):
CCAAAAATTACCATTTTACCCCTAAACGTCCAAAATTCCATTTTTAACCCCGATATACCAAAAGT
CCCATTTTACCCCCAAACTTTCCAAAATTCCATTTTCAAACCCAATTTCA
Found at i:42227888 original size:37 final size:37
Alignment explanation
Indices: 42227838--42227941 Score: 145
Period size: 37 Copynumber: 2.8 Consensus size: 37
42227828 GTTCTTGGAT
* *
42227838 CACCGACACGAAGCCTGCTAGGCCCATAGCCCGAATA
1 CACCGACACGAAGCCTGCTAGGCACATAGCCCGAAAA
* * * *
42227875 CACCGGCACGAAGCCTGTTAGGCACAAAGCCTGAAAA
1 CACCGACACGAAGCCTGCTAGGCACATAGCCCGAAAA
*
42227912 CACCGACACGAAGCCTACTAGGCACATAGC
1 CACCGACACGAAGCCTGCTAGGCACATAGC
42227942 ATGAATTTTA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.33, C:0.35, G:0.22, T:0.11
Consensus pattern (37 bp):
CACCGACACGAAGCCTGCTAGGCACATAGCCCGAAAA
Found at i:42231828 original size:19 final size:20
Alignment explanation
Indices: 42231801--42231852 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
42231791 TATGTGAATA
*
42231801 CTAGCGCACGAAGCACATCT
1 CTAGCGCACGAAGCACATAT
* * *
42231821 -TGGCGCACAAAGCGCATAT
1 CTAGCGCACGAAGCACATAT
42231840 CTAGCGCACGAAG
1 CTAGCGCACGAAG
42231853 TGCATCCTGA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.31, C:0.31, G:0.25, T:0.13
Consensus pattern (20 bp):
CTAGCGCACGAAGCACATAT
Found at i:42231857 original size:20 final size:19
Alignment explanation
Indices: 42231801--42231857 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
42231791 TATGTGAATA
*
42231801 CTAGCGCACGAA-GCACAT
1 CTAGCGCACGAAGGCATAT
* *
42231819 CTTGGCGCACAAAGCGCATAT
1 C-TAGCGCACGAAG-GCATAT
42231840 CTAGCGCACGAAGTGCAT
1 CTAGCGCACGAAG-GCAT
42231858 CCTGAGGCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
18 1 0.03
19 9 0.30
20 14 0.47
21 6 0.20
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.16
Consensus pattern (19 bp):
CTAGCGCACGAAGGCATAT
Found at i:42232399 original size:46 final size:46
Alignment explanation
Indices: 42232350--42232437 Score: 135
Period size: 46 Copynumber: 1.9 Consensus size: 46
42232340 AACAATTAAT
*
42232350 TTTTTATATTTTTT-AT-ATTTTTTAATTTTTTTAAATTTTAATGAG
1 TTTTTAT-TTTTTTCATAATTTTTTAATTTTTTTAAATTATAATGAG
*
42232395 TTTTTATTTTTTTCATAATTTTTTTATTTTTTTAAATTATAAT
1 TTTTTATTTTTTTCATAATTTTTTAATTTTTTTAAATTATAAT
42232438 TTTTTGAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
44 6 0.15
45 9 0.23
46 24 0.62
ACGTcount: A:0.26, C:0.01, G:0.02, T:0.70
Consensus pattern (46 bp):
TTTTTATTTTTTTCATAATTTTTTAATTTTTTTAAATTATAATGAG
Found at i:42232427 original size:9 final size:9
Alignment explanation
Indices: 42232348--42232426 Score: 67
Period size: 9 Copynumber: 8.8 Consensus size: 9
42232338 ATAACAATTA
42232348 ATTTTTTAT
1 ATTTTTTAT
42232357 ATTTTTTAT
1 ATTTTTTAT
42232366 ATTTTTTA-
1 ATTTTTTAT
42232374 ATTTTTT-T
1 ATTTTTTAT
* *
42232382 AAATTTTAAT
1 -ATTTTTTAT
*
42232392 GAGTTTTTAT
1 -ATTTTTTAT
42232402 -TTTTTTCAT
1 ATTTTTT-AT
42232411 AATTTTTT-T
1 -ATTTTTTAT
42232420 ATTTTTT
1 ATTTTTT
42232427 TAAATTATAA
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
8 19 0.33
9 25 0.43
10 8 0.14
11 6 0.10
ACGTcount: A:0.23, C:0.01, G:0.03, T:0.73
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:42232660 original size:21 final size:21
Alignment explanation
Indices: 42232634--42232675 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
42232624 TATAAAAAAG
42232634 TATAAGGACTCAATGTTCAAA
1 TATAAGGACTCAATGTTCAAA
42232655 TATAAGGACTCAATGTTCAAA
1 TATAAGGACTCAATGTTCAAA
42232676 ATTAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (21 bp):
TATAAGGACTCAATGTTCAAA
Found at i:42238290 original size:82 final size:82
Alignment explanation
Indices: 42238067--42238684 Score: 837
Period size: 82 Copynumber: 7.5 Consensus size: 82
42238057 GAATTAATTC
* * * *
42238067 TGTTGAATGACAGGAATAAATCTTAAAACAGAATTATTTAATTAATTCTTGTTTGGAAACAAAAT
1 TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
* * * *
42238132 -AAAAAACAAAAAAAATTC
66 CAAAATA-GAATAAAA-TA
* * * * *
42238150 TGTTGAATGGTAGGAATAAATCTTGAAACAGAATTATTTAATTAATTCTTGTTTGGAAACAAAAT
1 TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
42238215 CAAAATAGAATAAAATA
66 CAAAATAGAATAAAATA
* * * * *
42238232 TGTTGAACGGCAAGAATAAATCCTGAAACGGAATTATTCAATTAATTCTTGTTCGGAAATAAAAT
1 TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
*
42238297 TAAAATAGAATAAAATA
66 CAAAATAGAATAAAATA
* * * *
42238314 TGTTGAACGGCAGGAATAAATCCTGAGATAGAATTATTCAATTAATTCTTGTTAGGAAACAAAAT
1 TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
42238379 CAAAATAGAATAAAATA
66 CAAAATAGAATAAAATA
* *
42238396 TGTTGAACGGCAGAAATAAATCCTAAAACAGAATTATTTAATTAATTCTTGTTTGGAAACAAAAT
1 TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
* * *
42238461 -AAAAAACGAAAAAAATC
66 CAAAATA-GAATAAAATA
* *
42238478 TGTTGAACGGTAAGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
1 TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
42238543 CAAAATAGAATAAAATA
66 CAAAATAGAATAAAATA
* * * *
42238560 TGTTGAACGGCAGGAATAAATCCTGAAACAGAATTATTCAATTAATTCTTGCTAGGATACAAAAT
1 TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
42238625 CAAAATAGAATAAAATCA
66 CAAAATAGAATAAAAT-A
* * * *
42238643 -ATTGAATGACAGGAATAAATCCCAAAACAGAATTATTCAATT
1 TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATT
42238685 TTAATTTTTA
Statistics
Matches: 481, Mismatches: 50, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
81 5 0.01
82 397 0.83
83 74 0.15
84 5 0.01
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (82 bp):
TGTTGAACGGCAGGAATAAATCCTAAAACAGAATTATTCAATTAATTCTTGTTTGGAAACAAAAT
CAAAATAGAATAAAATA
Found at i:42238880 original size:50 final size:50
Alignment explanation
Indices: 42238823--42238932 Score: 157
Period size: 50 Copynumber: 2.2 Consensus size: 50
42238813 TAAAATATTT
* *
42238823 ATGTAAAATATAAGATCTAAACAAAACAATATAAATAAATATTTATGTTC
1 ATGTAAAACACAAGATCTAAACAAAACAATATAAATAAATATTTATGTTC
* * * *
42238873 ATGTAAAACACCAGATCTAAACAAAACAATTTAAATAAATATTTATATTT
1 ATGTAAAACACAAGATCTAAACAAAACAATATAAATAAATATTTATGTTC
*
42238923 ATTTAAAACA
1 ATGTAAAACA
42238933 TCATATCTGA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.32
Consensus pattern (50 bp):
ATGTAAAACACAAGATCTAAACAAAACAATATAAATAAATATTTATGTTC
Found at i:42240661 original size:31 final size:30
Alignment explanation
Indices: 42240623--42240757 Score: 109
Period size: 31 Copynumber: 4.5 Consensus size: 30
42240613 ATATAATATA
* *
42240623 TGGTACTTGAACTTGATATTTTTTTCTAATT
1 TGGTACTTAAACTTGACATTTTTTT-TAATT
42240654 TGGTACTTAAACTT----TTTTTTTGTCCAATT
1 TGGTACTTAAACTTGACATTTTTTT-T--AATT
* **
42240683 TAGTACACAAACTTGACACTTTTTTTTAATT
1 TGGTACTTAAACTTGACA-TTTTTTTTAATT
* *
42240714 TGGTA-TCTAAACTTGACACTTTTTTTAAGT
1 TGGTACT-TAAACTTGACATTTTTTTTAATT
*
42240744 TGATACTTAAACTT
1 TGGTACTTAAACTT
42240758 TTTGAGGTCC
Statistics
Matches: 84, Mismatches: 11, Indels: 19
0.74 0.10 0.17
Matches are distributed among these distances:
27 8 0.10
29 15 0.18
30 21 0.25
31 32 0.38
33 1 0.01
34 7 0.08
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (30 bp):
TGGTACTTAAACTTGACATTTTTTTTAATT
Found at i:42240755 original size:30 final size:31
Alignment explanation
Indices: 42240691--42240757 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
42240681 TTTAGTACAC
* *
42240691 AAACTTGACACTTTTTTTTAATTTGGTATCT
1 AAACTTGACACTTTTTTTTAAGTTGATATCT
42240722 AAACTTGACAC-TTTTTTTAAGTTGATA-CTT
1 AAACTTGACACTTTTTTTTAAGTTGATATC-T
42240752 AAACTT
1 AAACTT
42240758 TTTGAGGTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 1 0.03
30 21 0.64
31 11 0.33
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.48
Consensus pattern (31 bp):
AAACTTGACACTTTTTTTTAAGTTGATATCT
Found at i:42240785 original size:89 final size:91
Alignment explanation
Indices: 42240632--42240807 Score: 214
Period size: 89 Copynumber: 2.0 Consensus size: 91
42240622 ATGGTACTTG
* * * * ***
42240632 AACTTGATATTTTTTTCTAATTTGGTACTTAAACTTTTTTTTTGTCCAATTTAGTACACAAACTT
1 AACTTGACACTTTTTTCTAAGTTGATACTTAAACTTTTTTGAGGTCCAATTTAGTACACAAACTT
**
42240697 GACACTTTTTTTTAATTTGGTATCTA
66 GACACTTTTTCCTAATTTGGTATCTA
* *
42240723 AACTTGACACTTTTTT-TAAGTTGATACTTAAAC-TTTTTGAGGTCCAATTTGGTAC-CTGAACT
1 AACTTGACACTTTTTTCTAAGTTGATACTTAAACTTTTTTGAGGTCCAATTTAGTACAC-AAACT
*
42240785 TGACTCTTTTTCCTAATTTGGTA
65 TGACACTTTTTCCTAATTTGGTA
42240808 CCCAATTTTT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
88 1 0.01
89 42 0.58
90 15 0.21
91 14 0.19
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (91 bp):
AACTTGACACTTTTTTCTAAGTTGATACTTAAACTTTTTTGAGGTCCAATTTAGTACACAAACTT
GACACTTTTTCCTAATTTGGTATCTA
Found at i:42241022 original size:33 final size:32
Alignment explanation
Indices: 42240985--42241091 Score: 93
Period size: 33 Copynumber: 3.4 Consensus size: 32
42240975 CTAAAAAAGC
42240985 TTAGGTACCAAATTAGGGAAAAAAATGCCAAGT
1 TTAGGTACCAAATTAGGGAAAAAAATG-CAAGT
** *
42241018 TTAGGTACCAAATT-GGGTCCAAAAA---AATT
1 TTAGGTACCAAATTAGGG-AAAAAAATGCAAGT
*
42241047 TTAGGTACCGAATTA---AAAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGGAAAAAAA-TG-CAAGT
42241078 TTAGGTACCAAATT
1 TTAGGTACCAAATT
42241092 GAGTTAAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
26 5 0.08
29 16 0.27
31 16 0.27
32 3 0.05
33 19 0.32
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (32 bp):
TTAGGTACCAAATTAGGGAAAAAAATGCAAGT
Found at i:42241114 original size:59 final size:60
Alignment explanation
Indices: 42240956--42241137 Score: 235
Period size: 59 Copynumber: 3.0 Consensus size: 60
42240946 ATTTAATAAA
* * *
42240956 TTTAGGTACCAAATTGAATCT-AAAAAAGCTTAGGTACCAAATTAGGGAAAAAAA-TGCCAAG
1 TTTAGGTACCAAATTGAGTCTAAAAAAAGTTTAGGTACCAAATTA---AAAAAAAGTGTCAAG
* * * *
42241017 TTTAGGTACCAAATTGGGTCCAAAAAAATTTTAGGTACCGAATTAAAAAAAAGTGTCAAG
1 TTTAGGTACCAAATTGAGTCTAAAAAAAGTTTAGGTACCAAATTAAAAAAAAGTGTCAAG
* *
42241077 TTTAGGTACCAAATTGAGT-TAAAAAAAGTTTAAGTACCAAATTAAGAAAAAGTGTCAAG
1 TTTAGGTACCAAATTGAGTCTAAAAAAAGTTTAGGTACCAAATTAAAAAAAAGTGTCAAG
42241136 TT
1 TT
42241138 CAAGTACAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
59 44 0.42
60 24 0.23
61 18 0.17
62 20 0.19
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.26
Consensus pattern (60 bp):
TTTAGGTACCAAATTGAGTCTAAAAAAAGTTTAGGTACCAAATTAAAAAAAAGTGTCAAG
Found at i:42241143 original size:31 final size:31
Alignment explanation
Indices: 42241046--42241149 Score: 92
Period size: 31 Copynumber: 3.5 Consensus size: 31
42241036 CCAAAAAAAT
* * *
42241046 TTTAGGTACCGAATTAAAAAAAAGTGTCAAG
1 TTTAAGTACCAAATTAAGAAAAAGTGTCAAG
* *
42241077 TTTAGGTACCAAATTGAGTTAAAAA-----AAG
1 TTTAAGTACCAAATTAAG--AAAAAGTGTCAAG
42241105 TTTAAGTACCAAATTAAGAAAAAGTGTCAAG
1 TTTAAGTACCAAATTAAGAAAAAGTGTCAAG
* *
42241136 TTCAAGTACAAAAT
1 TTTAAGTACCAAAT
42241150 GTTATATTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
26 5 0.08
28 19 0.32
31 30 0.51
33 5 0.08
ACGTcount: A:0.47, C:0.10, G:0.16, T:0.27
Consensus pattern (31 bp):
TTTAAGTACCAAATTAAGAAAAAGTGTCAAG
Found at i:42242487 original size:18 final size:17
Alignment explanation
Indices: 42242466--42242507 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
42242456 ATATTTAAGC
42242466 TTTTATGTAATTTTATAT
1 TTTTATGTAA-TTTATAT
*
42242484 TTTT-TAATAATTTATAT
1 TTTTAT-GTAATTTATAT
42242501 TTTTATG
1 TTTTATG
42242508 ACTTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 5
0.74 0.07 0.19
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTTATGTAATTTATAT
Found at i:42249066 original size:17 final size:17
Alignment explanation
Indices: 42249044--42249087 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
42249034 GCCGAGGAGG
**
42249044 TTTCTTTTTCTTTTTAT
1 TTTCTTTTTCAATTTAT
*
42249061 TTTCTTCTTCAATTTAT
1 TTTCTTTTTCAATTTAT
*
42249078 TTTCGTTTTC
1 TTTCTTTTTC
42249088 GTATTCCCTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.09, C:0.16, G:0.02, T:0.73
Consensus pattern (17 bp):
TTTCTTTTTCAATTTAT
Found at i:42252123 original size:13 final size:14
Alignment explanation
Indices: 42252104--42252137 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
42252094 TAATAAGATT
42252104 ACCCCCAACCCCTC
1 ACCCCCAACCCCTC
42252118 -CCCCC-ACCCCTC
1 ACCCCCAACCCCTC
42252130 ACCCCCAA
1 ACCCCCAA
42252138 ATAAAGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 7 0.39
13 10 0.56
14 1 0.06
ACGTcount: A:0.21, C:0.74, G:0.00, T:0.06
Consensus pattern (14 bp):
ACCCCCAACCCCTC
Found at i:42252672 original size:65 final size:65
Alignment explanation
Indices: 42252591--42252716 Score: 252
Period size: 65 Copynumber: 1.9 Consensus size: 65
42252581 TTGAAGTAAC
42252591 TGCCAATCTTAAAAACAATGGAATGGAATAACATAAAATACTAGGAATACGAAAAAAGATGTAGT
1 TGCCAATCTTAAAAACAATGGAATGGAATAACATAAAATACTAGGAATACGAAAAAAGATGTAGT
42252656 TGCCAATCTTAAAAACAATGGAATGGAATAACATAAAATACTAGGAATACGAAAAAAGATG
1 TGCCAATCTTAAAAACAATGGAATGGAATAACATAAAATACTAGGAATACGAAAAAAGATG
42252717 CACTCACATT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.21
Consensus pattern (65 bp):
TGCCAATCTTAAAAACAATGGAATGGAATAACATAAAATACTAGGAATACGAAAAAAGATGTAGT
Found at i:42258348 original size:29 final size:31
Alignment explanation
Indices: 42258279--42258348 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
42258269 TAAGTTTTAA
*
42258279 GTATACATTTGAACCATAACTAAAATTTCAT
1 GTATACAATTGAACCATAACTAAAATTTCAT
* * * *
42258310 GTGTATAATTGCACCA-AATTAAAA-TTCAT
1 GTATACAATTGAACCATAACTAAAATTTCAT
42258339 GTATACAATT
1 GTATACAATT
42258349 ACACATTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
29 13 0.41
30 7 0.22
31 12 0.38
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (31 bp):
GTATACAATTGAACCATAACTAAAATTTCAT
Found at i:42258483 original size:14 final size:14
Alignment explanation
Indices: 42258464--42258496 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
42258454 TTTTGCATGT
42258464 AAAATGACTTCTGG
1 AAAATGACTTCTGG
*
42258478 AAAATGATTTCTGG
1 AAAATGACTTCTGG
42258492 AAAAT
1 AAAAT
42258497 AAGTCACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.30
Consensus pattern (14 bp):
AAAATGACTTCTGG
Found at i:42258736 original size:13 final size:13
Alignment explanation
Indices: 42258703--42258742 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
42258693 TTAATAATTT
42258703 TATATTTTACAT-
1 TATATTTTACATA
*
42258715 TGT-TTTTACATA
1 TATATTTTACATA
42258727 TATATTTTACATA
1 TATATTTTACATA
42258740 TAT
1 TAT
42258743 TGCAATGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 8 0.33
12 4 0.17
13 12 0.50
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (13 bp):
TATATTTTACATA
Found at i:42261523 original size:29 final size:29
Alignment explanation
Indices: 42261485--42261648 Score: 85
Period size: 29 Copynumber: 5.6 Consensus size: 29
42261475 TTGACTTTCG
*
42261485 GGGGTAAAAATGTAATTTTTGGTGAAATC
1 GGGGTTAAAATGTAATTTTTGGTGAAATC
* * *
42261514 GGAGTTAAAAATG-AAATTTT-G-GAAAGTTT
1 GGGGTT-AAAATGTAATTTTTGGTGAAA--TC
* *
42261543 GGGGGT-AAATGGTAATTTTTGGTGAAAAC
1 GGGGTTAAAAT-GTAATTTTTGGTGAAATC
*
42261572 GGGGTTAAAATG-AGA-TTTT-G-GAAAGTTTA
1 GGGGTTAAAATGTA-ATTTTTGGTGAAA---TC
*
42261601 GGGG-TAAAATAGTAATTTTTGGTGAAACC
1 GGGGTTAAAAT-GTAATTTTTGGTGAAATC
* *
42261630 TGGGGTAAAAATGGAATTT
1 -GGGGTTAAAATGTAATTT
42261649 GGAAGGTTTA
Statistics
Matches: 100, Mismatches: 16, Indels: 37
0.65 0.10 0.24
Matches are distributed among these distances:
26 4 0.04
27 9 0.09
28 13 0.13
29 34 0.34
30 26 0.26
31 10 0.10
32 4 0.04
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.33
Consensus pattern (29 bp):
GGGGTTAAAATGTAATTTTTGGTGAAATC
Found at i:42261705 original size:29 final size:30
Alignment explanation
Indices: 42261663--42261755 Score: 88
Period size: 29 Copynumber: 3.2 Consensus size: 30
42261653 GGTTTAGGGG
42261663 TAAAATGGCAATTTTGGGTGAAATCGAGGT
1 TAAAATGGCAATTTTGGGTGAAATCGAGGT
* *
42261693 TAAAATGG-GATTTT--G-GAAAGTTTAGAGG-
1 TAAAATGGCAATTTTGGGTGAAA---TCGAGGT
*
42261721 TAAAATGGTAATTTTGGGTGAAATCGAGGT
1 TAAAATGGCAATTTTGGGTGAAATCGAGGT
*
42261751 AAAAA
1 TAAAA
42261756 ATGGAGTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
26 4 0.08
27 1 0.02
28 8 0.16
29 20 0.40
30 12 0.24
31 1 0.02
32 4 0.08
ACGTcount: A:0.38, C:0.03, G:0.29, T:0.30
Consensus pattern (30 bp):
TAAAATGGCAATTTTGGGTGAAATCGAGGT
Found at i:42261921 original size:29 final size:28
Alignment explanation
Indices: 42261812--42261930 Score: 93
Period size: 29 Copynumber: 4.1 Consensus size: 28
42261802 ATCGGGGTCA
* * *
42261812 AAAATGGAGTTTTGGAAAGTTTGGGGGT
1 AAAACGGAATTTTGGAAAGTTTGGGGTT
* *
42261840 AAAATGGTAATTTCGGGTGAAA--TTGGGGTT
1 AAAACGG-AATTT--TG-GAAAGTTTGGGGTT
*
42261870 AAAATGGAATTTTGGAAAGTTTGGGG-T
1 AAAACGGAATTTTGGAAAGTTTGGGGTT
42261897 AAAACGGTAATTTTTGG-AAGTTTTGGGGTT
1 AAAACGG-AA-TTTTGGAAAG-TTTGGGGTT
42261927 AAAA
1 AAAA
42261931 ATAAAATTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
26 4 0.05
27 8 0.11
28 18 0.24
29 22 0.29
30 19 0.25
31 1 0.01
32 4 0.05
ACGTcount: A:0.32, C:0.02, G:0.33, T:0.34
Consensus pattern (28 bp):
AAAACGGAATTTTGGAAAGTTTGGGGTT
Found at i:42261932 original size:58 final size:58
Alignment explanation
Indices: 42261485--42261910 Score: 492
Period size: 58 Copynumber: 7.3 Consensus size: 58
42261475 TTGACTTTCG
* * *
42261485 GGGGTAAAAAT-GTAATTTTTGGTGAAATCGGAGTTAAAAATGAAATTTTGGAAAGTTTG
1 GGGGT-AAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
*
42261544 GGGGT-AAATGGTAATTTTTGGTGAAAACGGGGTT-AAAAT-GAGATTTTGGAAAGTTTA
1 GGGGTAAAATGGTAA-TTTTGGTGAAATCGGGGTTAAAAATGGA-ATTTTGGAAAGTTTA
* * *
42261601 GGGGTAAAATAGTAATTTTTGGTGAAACCTGGGG-TAAAAATGGAA-TTTGGAAGGTTTA
1 GGGGTAAAATGGTAA-TTTTGGTGAAATC-GGGGTTAAAAATGGAATTTTGGAAAGTTTA
* * *
42261659 GGGGTAAAATGGCAATTTTGGGTGAAATCGAGGTT-AAAATGGGATTTTGGAAAGTTTA
1 GGGGTAAAATGGTAATTTT-GGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
* * * *
42261717 GAGGTAAAATGGTAATTTTGGGTGAAATCGAGGTAAAAAATGGAGTTTTGGAAAGTTTA
1 GGGGTAAAATGGTAATTTT-GGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
* * * * * *
42261776 GGGGTAGATTAGTAATTTTGGGTGAAATCGGGGTCAAAAATGGAGTTTTGGAAAGTTTG
1 GGGGTAAAATGGTAATTTT-GGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
* *
42261835 GGGGTAAAATGGTAATTTCGGGTGAAATTGGGGTT-AAAATGGAATTTTGGAAAGTTT-
1 GGGGTAAAATGGTAATTT-TGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
*
42261892 GGGGTAAAACGGTAATTTT
1 GGGGTAAAATGGTAATTTT
42261911 TGGAAGTTTT
Statistics
Matches: 322, Mismatches: 34, Indels: 25
0.85 0.09 0.07
Matches are distributed among these distances:
56 1 0.00
57 60 0.19
58 143 0.44
59 116 0.36
60 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.32, T:0.32
Consensus pattern (58 bp):
GGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
Found at i:42261940 original size:29 final size:28
Alignment explanation
Indices: 42261862--42261949 Score: 65
Period size: 29 Copynumber: 3.0 Consensus size: 28
42261852 TCGGGTGAAA
*
42261862 TTGGGGTT-AAAATGGAATTTTGGAAAG-T
1 TTGGGGTTAAAAAT-AAATTTTGG-AAGTT
* *
42261890 TTGGGG-TAAAACGGTAATTTTTGGAAGTT
1 TTGGGGTTAAAA--ATAAATTTTGGAAGTT
*
42261919 TTGGGGTTAAAAATAAAATTTTAGAAAGTT
1 TTGGGGTTAAAAAT-AAATTTT-GGAAGTT
42261949 T
1 T
42261950 GAGGATTAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
27 1 0.02
28 13 0.28
29 20 0.43
30 13 0.28
ACGTcount: A:0.34, C:0.01, G:0.27, T:0.38
Consensus pattern (28 bp):
TTGGGGTTAAAAATAAATTTTGGAAGTT
Found at i:42261950 original size:29 final size:29
Alignment explanation
Indices: 42261862--42261959 Score: 83
Period size: 30 Copynumber: 3.4 Consensus size: 29
42261852 TCGGGTGAAA
* *
42261862 TTGGGGTT-AAAATGGAATTTTGGAAAGT
1 TTGGGGTTAAAAATGAAATTTTAGAAAGT
** * * *
42261890 TTGGGG-TAAAACGGTAATTTTTGGAAGTT
1 TTGGGGTTAAAAATGAAATTTTAGAAAG-T
*
42261919 TTGGGGTTAAAAATAAAATTTTAGAAAGT
1 TTGGGGTTAAAAATGAAATTTTAGAAAGT
*
42261948 TTGAGGATTAAA
1 TTG-GGGTTAAA
42261960 GAGCAATAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
27 1 0.02
28 20 0.37
29 11 0.20
30 22 0.41
ACGTcount: A:0.36, C:0.01, G:0.28, T:0.36
Consensus pattern (29 bp):
TTGGGGTTAAAAATGAAATTTTAGAAAGT
Found at i:42263001 original size:22 final size:22
Alignment explanation
Indices: 42262976--42263031 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
42262966 TGGAAACTTA
*
42262976 TTAAAACTATTAATGAAAA-TAT
1 TTAATACTATTAAT-AAAACTAT
*
42262998 TTAATATTATTAATAAAACTAT
1 TTAATACTATTAATAAAACTAT
42263020 TTAATAC-ATTAA
1 TTAATACTATTAA
42263032 ATAGGTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.30
22 21 0.70
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (22 bp):
TTAATACTATTAATAAAACTAT
Found at i:42263279 original size:38 final size:38
Alignment explanation
Indices: 42263236--42263327 Score: 184
Period size: 38 Copynumber: 2.4 Consensus size: 38
42263226 ATACCTTGTC
42263236 TGCTTCAAACACTTTGTGATCAAGTCTGTCACTTCGAA
1 TGCTTCAAACACTTTGTGATCAAGTCTGTCACTTCGAA
42263274 TGCTTCAAACACTTTGTGATCAAGTCTGTCACTTCGAA
1 TGCTTCAAACACTTTGTGATCAAGTCTGTCACTTCGAA
42263312 TGCTTCAAACACTTTG
1 TGCTTCAAACACTTTG
42263328 AGATTATATT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (38 bp):
TGCTTCAAACACTTTGTGATCAAGTCTGTCACTTCGAA
Found at i:42263946 original size:17 final size:15
Alignment explanation
Indices: 42263926--42263998 Score: 56
Period size: 17 Copynumber: 4.3 Consensus size: 15
42263916 AAATTTAGAC
42263926 TTAAATTAAATTCAAAT
1 TTAAATTAAA-T-AAAT
42263943 TTAAATTTGAAATAAAT
1 TTAAA-TT-AAATAAAT
*
42263960 CTAAATTTAAATCAAAT
1 TTAAA-TTAAAT-AAAT
*
42263977 TTAATCTTAAAATAAAT
1 TTAA-ATT-AAATAAAT
42263994 TTAAA
1 TTAAA
42263999 AGGGCTCGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
16 4 0.09
17 33 0.70
18 7 0.15
19 3 0.06
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.40
Consensus pattern (15 bp):
TTAAATTAAATAAAT
Found at i:42263965 original size:34 final size:34
Alignment explanation
Indices: 42263927--42263998 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
42263917 AATTTAGACT
*
42263927 TAAA-TTAAATTCAAATTTAAAT-TTGAAATAAATC
1 TAAATTTAAA-TCAAATTT-AATCTTAAAATAAATC
*
42263961 TAAATTTAAATCAAATTTAATCTTAAAATAAATT
1 TAAATTTAAATCAAATTTAATCTTAAAATAAATC
42263995 TAAA
1 TAAA
42263999 AGGGCTCGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 3 0.09
34 26 0.76
35 5 0.15
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (34 bp):
TAAATTTAAATCAAATTTAATCTTAAAATAAATC
Found at i:42263976 original size:11 final size:12
Alignment explanation
Indices: 42263904--42263980 Score: 51
Period size: 11 Copynumber: 6.8 Consensus size: 12
42263894 TAATAATTTT
*
42263904 TAAATTTAAA-A
1 TAAATTTAAATC
*
42263915 TAAATTTAGA-C
1 TAAATTTAAATC
42263926 TTAAA-TTAAAT-
1 -TAAATTTAAATC
*
42263937 TCAAATTTAAATT
1 T-AAATTTAAATC
42263950 TGAAA--TAAATC
1 T-AAATTTAAATC
42263961 TAAATTTAAATC
1 TAAATTTAAATC
42263973 -AAATTTAA
1 TAAATTTAA
42263981 TCTTAAAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
10 4 0.07
11 30 0.56
12 16 0.30
13 4 0.07
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (12 bp):
TAAATTTAAATC
Found at i:42265537 original size:41 final size:41
Alignment explanation
Indices: 42265477--42265558 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
42265467 AACTGACACG
* *
42265477 ACTCGAATTCAGGCTACACTTGGGGCAATGAACACCCTTGA
1 ACTCGAATTCAGGCCACACTTGGGACAATGAACACCCTTGA
*
42265518 ACTCGAATTCAGGCCACACTTGGGACAATGAACACCTTTGA
1 ACTCGAATTCAGGCCACACTTGGGACAATGAACACCCTTGA
42265559 CCATCAGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (41 bp):
ACTCGAATTCAGGCCACACTTGGGACAATGAACACCCTTGA
Found at i:42268697 original size:29 final size:29
Alignment explanation
Indices: 42268664--42268888 Score: 136
Period size: 29 Copynumber: 7.7 Consensus size: 29
42268654 ATTTAAGGTT
* * *
42268664 AAAATGTAATTTTGGGAAATTCGAGGATC
1 AAAATGTAATTTTGGAAAATTTGAGGGTC
* * *
42268693 AAAATATAATTTTAGAAAAGTT-AGGAGGTC
1 AAAATGTAATTTTGGAAAATTTGA-G-GGTC
*
42268723 AAAATGTGATTTTAGGAAAATTTG-GGGTC
1 AAAATGTAATTTT-GGAAAATTTGAGGGTC
* * *
42268752 AAAATGTGATTTTGGGAAATTTGAGGGTT
1 AAAATGTAATTTTGGAAAATTTGAGGGTC
* * * *
42268781 AAAATGT-ACTTTAGAGAAGTTT-AGGGGTT
1 AAAATGTAATTTTGGA-AAATTTGA-GGGTC
* * *
42268810 AAAATATGATTTTGGAAAAGTTTAGGGGGTC
1 AAAATGTAATTTTGGAAAA-TTT-GAGGGTC
* * * **
42268841 AAAATATGATTTTAGAAAAGTTTGAGACT-
1 AAAATGTAATTTTGGAAAA-TTTGAGGGTC
*
42268870 AAAATGTAATTTTTGAAAA
1 AAAATGTAATTTTGGAAAA
42268889 GTTTAGAGTA
Statistics
Matches: 156, Mismatches: 29, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
28 16 0.10
29 80 0.51
30 27 0.17
31 33 0.21
ACGTcount: A:0.39, C:0.03, G:0.24, T:0.34
Consensus pattern (29 bp):
AAAATGTAATTTTGGAAAATTTGAGGGTC
Found at i:42268910 original size:29 final size:28
Alignment explanation
Indices: 42268693--42268915 Score: 130
Period size: 29 Copynumber: 7.6 Consensus size: 28
42268683 TTCGAGGATC
*
42268693 AAAATATAATTTTAGAAAAG-TTAGGAGGT
1 AAAATATGATTTTAGAAAAGTTTA-GA-GT
* * *
42268722 CAAAATGTGATTTTAGGAAAA-TTTGGGGT
1 -AAAATATGATTTTA-GAAAAGTTTAGAGT
* * * *
42268751 CAAAATGTGATTTTGGGAAA-TTTGAGGGT
1 -AAAATATGATTTTAGAAAAGTTT-AGAGT
* * * *
42268780 TAAA-ATGTACTTTAGAGAAGTTTAGGGGTT
1 AAAATATG-ATTTTAGAAAAGTTTA-GAG-T
* *
42268810 AAAATATGATTTTGGAAAAGTTTAGGGGGT
1 AAAATATGATTTTAGAAAAGTTTA--GAGT
*
42268840 CAAAATATGATTTTAGAAAAGTTTGAGACT
1 -AAAATATGATTTTAGAAAAGTTT-AGAGT
* * *
42268870 AAAATGTAATTTTTGAAAAGTTTAGAGT
1 AAAATATGATTTTAGAAAAGTTTAGAGT
42268898 AAAAATATGATTTTAGAA
1 -AAAATATGATTTTAGAA
42268916 GATTTCGGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 25
0.75 0.13 0.12
Matches are distributed among these distances:
27 2 0.01
28 22 0.14
29 60 0.39
30 33 0.21
31 36 0.23
32 1 0.01
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.35
Consensus pattern (28 bp):
AAAATATGATTTTAGAAAAGTTTAGAGT
Found at i:42268926 original size:118 final size:117
Alignment explanation
Indices: 42268693--42268940 Score: 263
Period size: 118 Copynumber: 2.1 Consensus size: 117
42268683 TTCGAGGATC
* **
42268693 AAAATATAATTTTAGAAAAGTTAGGAGGTCAAAATGTGATTTTAGGAAAATTTGGGGTCAAAATG
1 AAAATATAATTTTAGAAAAGTTAGGAGGTCAAAATATGATTTTAGGAAAATTTGGACTCAAAATG
* * * * *
42268758 TGATTTTGGGAAATTTGAGGGTTAAAATGTACTTTAGAGAAGTTTAGGGGTT
66 TAATTTTGGAAAATTTGAGAGTAAAAATATACTTTAGAGAAGTTTAGGGGTT
* * *
42268810 AAAATATGATTTTGGAAAAGTTTAGGGGGTCAAAATATGATTTTA-GAAAAGTTTGAGACT-AAA
1 AAAATATAATTTTAGAAAAG-TTAGGAGGTCAAAATATGATTTTAGGAAAA-TTTG-GACTCAAA
* * *
42268873 ATGTAATTTTTGAAAAGTTT-AGAGTAAAAATATGA-TTT-TAGAAGATTTCGGGGTT
63 ATGTAATTTTGGAAAA-TTTGAGAGTAAAAATAT-ACTTTAGAGAAG-TTTAGGGGTT
* *
42268928 AAAGTACAATTTT
1 AAAATATAATTTT
42268941 TTAAATAAAA
Statistics
Matches: 108, Mismatches: 17, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
117 28 0.26
118 74 0.69
119 6 0.06
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (117 bp):
AAAATATAATTTTAGAAAAGTTAGGAGGTCAAAATATGATTTTAGGAAAATTTGGACTCAAAATG
TAATTTTGGAAAATTTGAGAGTAAAAATATACTTTAGAGAAGTTTAGGGGTT
Found at i:42270622 original size:21 final size:21
Alignment explanation
Indices: 42270598--42270637 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
42270588 TAATTTAAAT
*
42270598 AAATTTAAATTTAAAATGTCC
1 AAATTTAAATTCAAAATGTCC
42270619 AAATTTAAATTCAAAATGT
1 AAATTTAAATTCAAAATGT
42270638 ATTAGACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (21 bp):
AAATTTAAATTCAAAATGTCC
Found at i:42274632 original size:28 final size:27
Alignment explanation
Indices: 42274600--42274660 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 27
42274590 AAACGGGACC
42274600 TTTTGAATGCTC-AGAGGCAAAATGGTAA
1 TTTTGAAT-CTCGAG-GGCAAAATGGTAA
*
42274628 TTTTGGACTCTCGAGGGCAAAATGGTAA
1 TTTT-GAATCTCGAGGGCAAAATGGTAA
42274656 TTTTG
1 TTTTG
42274661 GGAAAATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 1 0.03
28 24 0.80
29 5 0.17
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (27 bp):
TTTTGAATCTCGAGGGCAAAATGGTAA
Found at i:42274716 original size:28 final size:28
Alignment explanation
Indices: 42274618--42274717 Score: 78
Period size: 28 Copynumber: 3.5 Consensus size: 28
42274608 GCTCAGAGGC
* ** *
42274618 AAAATGGTAATTTTGGACTCTCGAGGGC
1 AAAATGGTAATTTTGGACACTTAAGGGT
* * *
42274646 AAAATGGTAATTTTGGGAAAATTTAGGGTT
1 AAAATGGTAATTTT-GGACACTTAAGGG-T
*
42274676 AAAAAT-G-ACATTTTAGACACTTAAGGGT
1 -AAAATGGTA-ATTTTGGACACTTAAGGGT
42274704 AAAATGGTAATTTT
1 AAAATGGTAATTTT
42274718 TAGAAAAATC
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
27 5 0.09
28 21 0.38
29 19 0.34
30 6 0.11
31 5 0.09
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (28 bp):
AAAATGGTAATTTTGGACACTTAAGGGT
Found at i:42274806 original size:29 final size:30
Alignment explanation
Indices: 42274765--42275043 Score: 209
Period size: 30 Copynumber: 9.4 Consensus size: 30
42274755 TCCGAGGGTT
*
42274765 AAATGGTAATTTTAAG-AGTTTCAGGGTCAA
1 AAATGG-AATTTTTAGAAGTTTCAGGGTCAA
* * *
42274795 AAATGGAATTTTTGGAAGCTT-GGGGTC-A
1 AAATGGAATTTTTAGAAGTTTCAGGGTCAA
*
42274823 AAATGGAATTTTTTAGAAGTTT--GGGTGGAAA
1 AAATGGAA-TTTTTAGAAGTTTCAGGGT--CAA
* *
42274854 AAATGTAATTTTTAGAAGTTTCGGGGTCAA
1 AAATGGAATTTTTAGAAGTTTCAGGGTCAA
* * *
42274884 AAATGGAAATTTTGGAAG-TTCGGGGGT-AA
1 AAATGGAATTTTTAGAAGTTTC-AGGGTCAA
** * * * *
42274913 AAATATAATTTTTGGAAGTTTTAAGGTTAA
1 AAATGGAATTTTTAGAAGTTTCAGGGTCAA
* *
42274943 AAATGGAATTTTTAGAAATTTGAGGGT-AA
1 AAATGGAATTTTTAGAAGTTTCAGGGTCAA
* *
42274972 AAATGGAATTTTTGGAAGTTTTAGGGTCAA
1 AAATGGAATTTTTAGAAGTTTCAGGGTCAA
* * * *
42275002 AAATGTAATTTTGAAAAAG-TTCGGGGTC-A
1 AAATGGAATTTT-TAGAAGTTTCAGGGTCAA
*
42275031 AAATGTAATTTTT
1 AAATGGAATTTTT
42275044 GGACAATTTA
Statistics
Matches: 203, Mismatches: 34, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
28 13 0.06
29 85 0.42
30 90 0.44
31 11 0.05
32 4 0.02
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.35
Consensus pattern (30 bp):
AAATGGAATTTTTAGAAGTTTCAGGGTCAA
Found at i:42274864 original size:59 final size:60
Alignment explanation
Indices: 42274765--42275046 Score: 247
Period size: 59 Copynumber: 4.8 Consensus size: 60
42274755 TCCGAGGGTT
* ** * *
42274765 AAATGGTAATTTTAAG-AGTTTCAGGGTCAAAAATGGAATTTTTGGAAG-CTT-GGGGTC-A
1 AAATGG-AATTTTTAGAAGTTTGGGGGT-AAAAATGGAATTTTTGGAAGTTTTAAGGGTCAA
* * * **
42274823 AAATGGAATTTTTTAGAAGTTTGGGTGGAAAAAATGTAATTTTTAGAAG-TTTCGGGGTCAA
1 AAATGGAA-TTTTTAGAAGTTTGGG-GGTAAAAATGGAATTTTTGGAAGTTTTAAGGGTCAA
* * * ** *
42274884 AAATGGAAATTTTGGAAGTTCGGGGGTAAAAATATAATTTTTGGAAGTTTTAA-GGTTAA
1 AAATGGAATTTTTAGAAGTTTGGGGGTAAAAATGGAATTTTTGGAAGTTTTAAGGGTCAA
* *
42274943 AAATGGAATTTTTAGAAATTTGAGGGTAAAAATGGAATTTTTGGAAGTTTT-AGGGTCAA
1 AAATGGAATTTTTAGAAGTTTGGGGGTAAAAATGGAATTTTTGGAAGTTTTAAGGGTCAA
* * * * * *
42275002 AAATGTAATTTTGAAAAAG-TTCGGGGTCAAAATGTAATTTTTGGA
1 AAATGGAATTTT-TAGAAGTTTGGGGGTAAAAATGGAATTTTTGGA
42275047 CAATTTAGGG
Statistics
Matches: 184, Mismatches: 32, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
57 2 0.01
58 13 0.07
59 133 0.72
60 27 0.15
61 9 0.05
ACGTcount: A:0.36, C:0.04, G:0.26, T:0.35
Consensus pattern (60 bp):
AAATGGAATTTTTAGAAGTTTGGGGGTAAAAATGGAATTTTTGGAAGTTTTAAGGGTCAA
Found at i:42274874 original size:89 final size:88
Alignment explanation
Indices: 42274765--42275013 Score: 265
Period size: 89 Copynumber: 2.8 Consensus size: 88
42274755 TCCGAGGGTT
* *
42274765 AAATGGTAATTTTAAG-AGTTTCAGGGTCAAAAATGGAATTTTTGGAAGCTTGGGGTCAAAATGG
1 AAAT-GTAATTTTTAGAAGTTTCAGGGTCAAAAATGGAATTTTTGGAAG-TTGGGGTCAAAATGT
*
42274829 AATTTTTTAGAAG-TTT-GGGTGGAAA
64 AATTTTTTAGAAGTTTTAAGGT--AAA
* * * *
42274854 AAATGTAATTTTTAGAAGTTTCGGGGTCAAAAATGGAAATTTTGGAAGTTCGGGGGTAAAAATAT
1 AAATGTAATTTTTAGAAGTTTCAGGGTCAAAAATGGAATTTTTGGAAGTT--GGGGTCAAAATGT
* *
42274919 AA-TTTTTGGAAGTTTTAAGGTTAA
64 AATTTTTTAGAAGTTTTAAGGTAAA
* * * *
42274943 AAATGGAATTTTTAGAAATTTGAGGGT-AAAAATGGAATTTTTGGAAGTTTTAGGGTCAAAAATG
1 AAATGTAATTTTTAGAAGTTTCAGGGTCAAAAATGGAATTTTTGGAAG--TTGGGGTC-AAAATG
42275007 TAATTTT
63 TAATTTT
42275014 GAAAAAGTTC
Statistics
Matches: 134, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
88 35 0.26
89 76 0.57
90 20 0.15
91 3 0.02
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (88 bp):
AAATGTAATTTTTAGAAGTTTCAGGGTCAAAAATGGAATTTTTGGAAGTTGGGGTCAAAATGTAA
TTTTTTAGAAGTTTTAAGGTAAA
Done.