Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 145 of 182
Found at i:44720883 original size:58 final size:57
Alignment explanation
Indices: 44720805--44721000 Score: 198
Period size: 58 Copynumber: 3.4 Consensus size: 57
44720795 TGGGTTTTTA
*
44720805 GGGGTAAAATGGT-AATTTTTGTGAAATCGGGGTTAAAAATGGAATTTGGAAAGTTT
1 GGGGTAAAATGGTAAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTGGAAAGTTT
* ** * * *
44720861 GGGGAATAAAATGGTAAATTTTGGTAAAAAT-AAGGTCAAAAGTGAAATTTTGGAAAGTTT
1 GGGG--TAAAATGGTAAATTTTGGT-GAAATCGGGGTTAAAAATGGAA-TTTGGAAAGTTT
* * * * * *
44720921 GAGGCAAAATGGTAAGTTTTGGTGAAATCGGGATTAAAAATGGGATTTAGAGAAGTTT
1 GGGGTAAAATGGTAAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTGGA-AAGTTT
*
44720979 GGGGGTAAAATGGTAATTTTTG
1 -GGGGTAAAATGGTAAATTTTG
44721001 AAAGTTTCGG
Statistics
Matches: 110, Mismatches: 22, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
56 4 0.04
57 9 0.08
58 41 0.37
59 37 0.34
60 19 0.17
ACGTcount: A:0.37, C:0.02, G:0.30, T:0.32
Consensus pattern (57 bp):
GGGGTAAAATGGTAAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTGGAAAGTTT
Found at i:44721043 original size:30 final size:30
Alignment explanation
Indices: 44720973--44721214 Score: 254
Period size: 30 Copynumber: 8.0 Consensus size: 30
44720963 GGATTTAGAG
* *
44720973 AAGTTTGGGGGT-AAAATGGTAATTTTTG-A
1 AAGTTTTGGGGTCAAAAT-GTAATTTTGGAA
* * *
44721002 AAGTTTCGGGGTCAAAATATAATTTTAGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* * *
44721032 GATTTTTGGGGTCAAAATGTAATTTTAGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
*
44721062 AAGTTTTGAGGTCAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* * *
44721092 AAGTTTCGAGGTTTAAAATGTAATTTTGGAA
1 AAGTTTTG-GGGTCAAAATGTAATTTTGGAA
* * *
44721123 AAGTTTTTGGGGGTTAAACTATAATTTTGGAA
1 AAG-TTTT-GGGGTCAAAATGTAATTTTGGAA
*
44721155 AAGTTTTAGGGTCAAAATGTAATTTTGGAA
1 AAGTTTTGGGGTCAAAATGTAATTTTGGAA
* * *
44721185 AAGTTTTAGGGTCTAAATATAATTTCTGGA
1 AAGTTTTGGGGTCAAAATGTAATTT-TGGA
44721215 CAATTTAGGG
Statistics
Matches: 182, Mismatches: 25, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
29 19 0.10
30 107 0.59
31 30 0.16
32 25 0.14
33 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.38
Consensus pattern (30 bp):
AAGTTTTGGGGTCAAAATGTAATTTTGGAA
Found at i:44721156 original size:93 final size:90
Alignment explanation
Indices: 44720966--44721209 Score: 278
Period size: 93 Copynumber: 2.7 Consensus size: 90
44720956 AAAAATGGGA
* ** *
44720966 TTTAGAGAAGTTTGGGGGT-AAAATGGTAATTTTTG-AAAGTTTCGGGGTCAAAATATAATTTTA
1 TTTAGAAAAGTTTTAGGGTCAAAAT-GTAATTTTGGAAAAGTTTCGGGGTCAAAATATAATTTTA
* *
44721029 GAAGATTTTTGGGGTCAAAATGTAAT
65 GAAAATTTTTGGGGTCAAAATATAAT
* * *
44721055 TTTAGAAAAGTTTT-GAGGTCAAAATGTAATTTTGGAAAAGTTTCGAGGTTTAAAATGTAATTTT
1 TTTAGAAAAGTTTTAG-GGTCAAAATGTAATTTTGGAAAAGTTTCG-GGGTCAAAATATAATTTT
* * *
44721119 GGAAAAGTTTTTGGGGGTTAAACTATAAT
64 AGAAAA-TTTTT-GGGGTCAAAATATAAT
* ** *
44721148 TTTGGAAAAGTTTTAGGGTCAAAATGTAATTTTGGAAAAGTTTTAGGGTCTAAATATAATTT
1 TTTAGAAAAGTTTTAGGGTCAAAATGTAATTTTGGAAAAGTTTCGGGGTCAAAATATAATTT
44721210 CTGGACAATT
Statistics
Matches: 130, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
88 1 0.01
89 24 0.18
90 14 0.11
91 19 0.15
92 18 0.14
93 53 0.41
94 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (90 bp):
TTTAGAAAAGTTTTAGGGTCAAAATGTAATTTTGGAAAAGTTTCGGGGTCAAAATATAATTTTAG
AAAATTTTTGGGGTCAAAATATAAT
Found at i:44722068 original size:20 final size:19
Alignment explanation
Indices: 44722034--44722074 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
44722024 TTAAGAACTC
*
44722034 ATCCCTTTTTCTTTTGAAA
1 ATCCCTTTTTATTTTGAAA
*
44722053 ATCCCTTTTTTATTTTTAAA
1 ATCCC-TTTTTATTTTGAAA
44722073 AT
1 AT
44722075 TAAAACCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.24, C:0.17, G:0.02, T:0.56
Consensus pattern (19 bp):
ATCCCTTTTTATTTTGAAA
Found at i:44723256 original size:6 final size:6
Alignment explanation
Indices: 44723247--44723345 Score: 75
Period size: 6 Copynumber: 16.8 Consensus size: 6
44723237 TTTTTTTATG
** * *
44723247 TTAAAT TTAATAT CTT-AAT TTTTAT TTAAAT TTAAAT TCAAA- GTAAAT
1 TTAAAT TTAA-AT -TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
44723295 TTAAAT AATTAAAT TTAAA- TTAAA- ATAAAT TTAAAT TTAAA- -TAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
44723341 TTAAA
1 TTAAA
44723346 ATCAATTTAA
Statistics
Matches: 75, Mismatches: 9, Indels: 18
0.74 0.09 0.18
Matches are distributed among these distances:
4 4 0.05
5 14 0.19
6 46 0.61
7 3 0.04
8 8 0.11
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (6 bp):
TTAAAT
Found at i:44723317 original size:11 final size:11
Alignment explanation
Indices: 44723270--44723355 Score: 68
Period size: 11 Copynumber: 7.5 Consensus size: 11
44723260 CTTAATTTTT
44723270 ATTTAAATTTAA
1 ATTTAAA-TTAA
* *
44723282 ATTCAAAGTAA
1 ATTTAAATTAA
44723293 ATTTAAATAATTAA
1 ATTT--A-AATTAA
44723307 ATTTAAATTAA
1 ATTTAAATTAA
*
44723318 A-ATAAATTTAA
1 ATTTAAA-TTAA
44723329 ATTTAAA-TAA
1 ATTTAAATTAA
* *
44723339 ATTTAAAATCA
1 ATTTAAATTAA
44723350 ATTTAA
1 ATTTAA
44723356 CTCTAAATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
10 14 0.23
11 26 0.43
12 11 0.18
13 1 0.02
14 9 0.15
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (11 bp):
ATTTAAATTAA
Found at i:44723325 original size:16 final size:16
Alignment explanation
Indices: 44723273--44723345 Score: 96
Period size: 16 Copynumber: 4.6 Consensus size: 16
44723263 AATTTTTATT
*
44723273 TAAATTTAAATTCAAAG
1 TAAATTTAAATT-AAAA
*
44723290 TAAATTTAAA-T-AAT
1 TAAATTTAAATTAAAA
44723304 TAAATTTAAATTAAAA
1 TAAATTTAAATTAAAA
*
44723320 TAAATTTAAATTTAAA
1 TAAATTTAAATTAAAA
44723336 TAAATTTAAA
1 TAAATTTAAA
44723346 ATCAATTTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
14 12 0.24
15 1 0.02
16 28 0.55
17 10 0.20
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (16 bp):
TAAATTTAAATTAAAA
Found at i:44723362 original size:27 final size:26
Alignment explanation
Indices: 44723310--44723363 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
44723300 TAATTAAATT
*
44723310 TAAATTAAAATAAATTTAAATTTAAA
1 TAAATTAAAATAAATTTAAATCTAAA
* *
44723336 TAAATTTAAAATCAATTTAACTCTAAA
1 TAAA-TTAAAATAAATTTAAATCTAAA
44723363 T
1 T
44723364 TAAACGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (26 bp):
TAAATTAAAATAAATTTAAATCTAAA
Found at i:44724239 original size:32 final size:32
Alignment explanation
Indices: 44724159--44724225 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
44724149 TGAAAATATT
* *
44724159 TAAATTAAATCCTAAAAACAAAAGATAATTTC
1 TAAATTAATTCTTAAAAACAAAAGATAATTTC
44724191 TAAATTAATTCTTAAAAACAAAAGATAATTTC
1 TAAATTAATTCTTAAAAACAAAAGATAATTTC
44724223 TAA
1 TAA
44724226 TTTTGAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.31
Consensus pattern (32 bp):
TAAATTAATTCTTAAAAACAAAAGATAATTTC
Found at i:44724319 original size:23 final size:23
Alignment explanation
Indices: 44724265--44724321 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
44724255 CGTTCATCTT
*
44724265 TGCTGACTAGACCTTCTAAAAGC
1 TGCTGACTGGACCTTCTAAAAGC
* *
44724288 TGCTGACTGGACCTTTTAGAAGC
1 TGCTGACTGGACCTTCTAAAAGC
44724311 TGCTGACTGGA
1 TGCTGACTGGA
44724322 TGCCACATCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (23 bp):
TGCTGACTGGACCTTCTAAAAGC
Found at i:44726128 original size:24 final size:24
Alignment explanation
Indices: 44726077--44726131 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
44726067 CCCTCCAGTT
* *
44726077 AAACTCTGTTTATTTGTTTCAATT
1 AAACTCTATTTATTTGTTTCAATC
* *
44726101 AAACTCTATTTATTTGTTTGAGTC
1 AAACTCTATTTATTTGTTTCAATC
44726125 AAACTCT
1 AAACTCT
44726132 TATTACTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (24 bp):
AAACTCTATTTATTTGTTTCAATC
Found at i:44728118 original size:24 final size:24
Alignment explanation
Indices: 44728067--44728121 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
44728057 CCCTCCAGTT
*
44728067 AAACTCTGTTTATTTGTTTCAATT
1 AAACTCTGTTTATTTGTTTCAATC
* *
44728091 AAACTCTGTTTATTTGTTTGAGTC
1 AAACTCTGTTTATTTGTTTCAATC
44728115 AAACTCT
1 AAACTCT
44728122 TATTACTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.11, T:0.49
Consensus pattern (24 bp):
AAACTCTGTTTATTTGTTTCAATC
Found at i:44730407 original size:16 final size:17
Alignment explanation
Indices: 44730386--44730418 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
44730376 GTGTAATTTG
44730386 TTGATTTGAT-ATTTTT
1 TTGATTTGATAATTTTT
44730402 TTGATTTGATAATTTTT
1 TTGATTTGATAATTTTT
44730419 AATCCTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (17 bp):
TTGATTTGATAATTTTT
Found at i:44730838 original size:23 final size:21
Alignment explanation
Indices: 44730819--44730872 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
44730809 AATTAATTAA
44730819 AAATCGATTGAATTTGTAATT
1 AAATCGATTGAATTTGTAATT
*
44730840 AAATTGATTGAATTT-T--TT
1 AAATCGATTGAATTTGTAATT
44730858 CAAATCGATTGAATT
1 -AAATCGATTGAATT
44730873 GATGAAGTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 2 0.07
19 13 0.43
20 1 0.03
21 14 0.47
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (21 bp):
AAATCGATTGAATTTGTAATT
Found at i:44746922 original size:19 final size:20
Alignment explanation
Indices: 44746885--44746922 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
44746875 TATTTTTACA
44746885 TATTTATTAAAATAATAAAT
1 TATTTATTAAAATAATAAAT
* *
44746905 TATTT-TTATAATATTAAA
1 TATTTATTAAAATAATAAA
44746923 ATTTACCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTATTAAAATAATAAAT
Found at i:44751946 original size:30 final size:27
Alignment explanation
Indices: 44751896--44751952 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
44751886 CCCTTCACAA
44751896 ACACTCCATCATCAAATTCTTCTTCCT
1 ACACTCCATCATCAAATTCTTCTTCCT
*
44751923 ACACTCCATCATCAAATTCTTCTTCTT
1 ACACTCCATCATCAAATTCTTCTTCCT
44751950 ACA
1 ACA
44751953 TAAAAACAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.35, G:0.00, T:0.37
Consensus pattern (27 bp):
ACACTCCATCATCAAATTCTTCTTCCT
Found at i:44755563 original size:40 final size:40
Alignment explanation
Indices: 44755519--44755596 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
44755509 GACAAAAAAT
44755519 TTCTTCCTAGTGATGCAATTTTCATTTAACATGCCTTTAA
1 TTCTTCCTAGTGATGCAATTTTCATTTAACATGCCTTTAA
44755559 TTCTTCCTAGTGATGCAATTTTCATTTAACATGCCTTT
1 TTCTTCCTAGTGATGCAATTTTCATTTAACATGCCTTT
44755597 TTTTCCAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (40 bp):
TTCTTCCTAGTGATGCAATTTTCATTTAACATGCCTTTAA
Found at i:44763478 original size:18 final size:18
Alignment explanation
Indices: 44763455--44763491 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44763445 TTTGTGATCA
44763455 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
* *
44763473 AAATTGGAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
44763491 A
1 A
44763492 TATGAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:44767837 original size:17 final size:17
Alignment explanation
Indices: 44767815--44767853 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
44767805 CTCCACCTTG
* * *
44767815 ACAAGAATTCTCTACGA
1 ACAAGAACTCTCAACAA
44767832 ACAAGAACTCTCAACAA
1 ACAAGAACTCTCAACAA
44767849 ACAAG
1 ACAAG
44767854 TTCTCCACCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.49, C:0.26, G:0.10, T:0.15
Consensus pattern (17 bp):
ACAAGAACTCTCAACAA
Found at i:44777606 original size:9 final size:9
Alignment explanation
Indices: 44777592--44777625 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
44777582 TTGATCCGAA
44777592 TAACTCAAT
1 TAACTCAAT
*
44777601 TAACTCAAA
1 TAACTCAAT
44777610 T-ACTCAAT
1 TAACTCAAT
44777618 TAACTCAA
1 TAACTCAA
44777626 ATAGCTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (9 bp):
TAACTCAAT
Found at i:44777616 original size:17 final size:17
Alignment explanation
Indices: 44777594--44777628 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
44777584 GATCCGAATA
44777594 ACTCAATTAACTCAAAT
1 ACTCAATTAACTCAAAT
44777611 ACTCAATTAACTCAAAT
1 ACTCAATTAACTCAAAT
44777628 A
1 A
44777629 GCTTGAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.29
Consensus pattern (17 bp):
ACTCAATTAACTCAAAT
Found at i:44781124 original size:24 final size:24
Alignment explanation
Indices: 44781038--44781112 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
44781028 AGAAATAATC
* *
44781038 TTTCAGTTAAACTCTGTTTAATTG
1 TTTCAATTAAACTCTGTTTATTTG
*
44781062 TTTCAATTAAACTCTGTTTATTTA
1 TTTCAATTAAACTCTGTTTATTTG
44781086 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
44781110 TTT
1 TTT
44781113 GAGTCAAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTATTTG
Found at i:44783236 original size:7 final size:7
Alignment explanation
Indices: 44783224--44783266 Score: 86
Period size: 7 Copynumber: 6.1 Consensus size: 7
44783214 AATAACTCAA
44783224 TTTGAGT
1 TTTGAGT
44783231 TTTGAGT
1 TTTGAGT
44783238 TTTGAGT
1 TTTGAGT
44783245 TTTGAGT
1 TTTGAGT
44783252 TTTGAGT
1 TTTGAGT
44783259 TTTGAGT
1 TTTGAGT
44783266 T
1 T
44783267 CAAGTCAAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.58
Consensus pattern (7 bp):
TTTGAGT
Found at i:44783427 original size:18 final size:19
Alignment explanation
Indices: 44783396--44783443 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
44783386 AAAAAAATCA
*
44783396 AAATATTTTTTAAAATTCT-
1 AAATA-TTTATAAAATTCTC
*
44783415 AAATATTTATAAAATTTTC
1 AAATATTTATAAAATTCTC
44783434 AAA-ATTTATA
1 AAATATTTATA
44783444 TTTAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 18 0.69
19 8 0.31
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (19 bp):
AAATATTTATAAAATTCTC
Found at i:44783752 original size:16 final size:15
Alignment explanation
Indices: 44783711--44783752 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
44783701 AACTCGAACA
44783711 ATTTCACTCG-ATTC
1 ATTTCACTCGAATTC
*
44783725 AATTCGACTCGAATTTC
1 ATTTC-ACTCGAA-TTC
44783742 ATTTCACTCGA
1 ATTTCACTCGA
44783753 CTCGATTCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 4 0.17
15 5 0.22
16 7 0.30
17 7 0.30
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (15 bp):
ATTTCACTCGAATTC
Found at i:44784786 original size:21 final size:20
Alignment explanation
Indices: 44784758--44784802 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
44784748 TAAGTTTTTC
44784758 TATAAACTCTATTTTCAAAA
1 TATAAACTCTATTTTCAAAA
* * *
44784778 TATACAACTTTGTTTTTAAAA
1 TATA-AACTCTATTTTCAAAA
44784799 TATA
1 TATA
44784803 TGTTTTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.44
Consensus pattern (20 bp):
TATAAACTCTATTTTCAAAA
Found at i:44792763 original size:18 final size:19
Alignment explanation
Indices: 44792740--44792778 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
44792730 GTTAATATAT
44792740 TTATATAAA-ATAAAAATA
1 TTATATAAATATAAAAATA
44792758 TTATATAAATATAAAAATA
1 TTATATAAATATAAAAATA
44792777 TT
1 TT
44792779 CAAGAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TTATATAAATATAAAAATA
Found at i:44793912 original size:20 final size:20
Alignment explanation
Indices: 44793872--44793914 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
44793862 AAAAAATCTC
*
44793872 AAAATTAAAATATATAATAA
1 AAAATTAAAATATAAAATAA
44793892 AAAATTAAAAT-TAAAATTAA
1 AAAATTAAAATATAAAA-TAA
44793912 AAA
1 AAA
44793915 GTTTATCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAATTAAAATATAAAATAA
Found at i:44798039 original size:29 final size:29
Alignment explanation
Indices: 44798007--44798062 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
44797997 TAAAATAATT
*
44798007 TAATAGTCAATTGAGCTCTCAATTGAAAA
1 TAATACTCAATTGAGCTCTCAATTGAAAA
* *
44798036 TAATACTCAATTGAGCTTTTAATTGAA
1 TAATACTCAATTGAGCTCTCAATTGAA
44798063 TATTGTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (29 bp):
TAATACTCAATTGAGCTCTCAATTGAAAA
Found at i:44798160 original size:9 final size:9
Alignment explanation
Indices: 44798146--44798193 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
44798136 AAAAAAATAG
*
44798146 AATTTTCAA
1 AATTTTAAA
44798155 AATTTT-AA
1 AATTTTAAA
*
44798163 AATTATAAA
1 AATTTTAAA
44798172 AATTATTAAA
1 AATT-TTAAA
*
44798182 AATTCTAAA
1 AATTTTAAA
44798191 AAT
1 AAT
44798194 CTGAAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
8 7 0.21
9 19 0.56
10 8 0.24
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTTTAAA
Found at i:44798185 original size:19 final size:17
Alignment explanation
Indices: 44798153--44798223 Score: 58
Period size: 19 Copynumber: 4.2 Consensus size: 17
44798143 TAGAATTTTC
44798153 AAAATTTTAAAATTATA
1 AAAATTTTAAAATTATA
*
44798170 AAAATTATTAAAAATTCTA
1 AAAATT-TT-AAAATTATA
* *
44798189 AAAATCTGAAAA-TAT-
1 AAAATTTTAAAATTATA
* *
44798204 -AATTTTTCAAATTATA
1 AAAATTTTAAAATTATA
44798220 AAAA
1 AAAA
44798224 ATTCATAAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
14 7 0.17
15 3 0.08
16 2 0.05
17 12 0.30
18 3 0.08
19 13 0.32
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (17 bp):
AAAATTTTAAAATTATA
Found at i:44798257 original size:41 final size:41
Alignment explanation
Indices: 44798163--44798264 Score: 111
Period size: 41 Copynumber: 2.5 Consensus size: 41
44798153 AAAATTTTAA
*
44798163 AATTATAAAAATTATTAAAAATTCTAAAAATCTGAAAATAT
1 AATTATAAAAATTATAAAAAATTCTAAAAATCTGAAAATAT
* **
44798204 AATTTTTCAAATTATAAAAAATTCATAAAAAT-TGAAAA-A-
1 AATTATAAAAATTATAAAAAATTC-TAAAAATCTGAAAATAT
*
44798243 AATCATATAAAAATTATGAAAA
1 AAT--TATAAAAATTATAAAAA
44798265 TATAACAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
39 3 0.06
40 1 0.02
41 39 0.78
42 7 0.14
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (41 bp):
AATTATAAAAATTATAAAAAATTCTAAAAATCTGAAAATAT
Found at i:44798264 original size:10 final size:9
Alignment explanation
Indices: 44798161--44798278 Score: 67
Period size: 10 Copynumber: 12.0 Consensus size: 9
44798151 TCAAAATTTT
44798161 AAAATTATA
1 AAAATTATA
44798170 AAAATTATTA
1 AAAATTA-TA
*
44798180 AAAATTCTA
1 AAAATTATA
*
44798189 AAAATCTGAAA
1 AAAAT-T-ATA
* *
44798200 ATATAATTTTT
1 A-A-AATTATA
*
44798211 CAAATTATAA
1 AAAATTAT-A
44798221 AAAATTCATA
1 AAAATT-ATA
*
44798231 AAAATTGAAA
1 AAAATT-ATA
44798241 AAAATCATATA
1 AAAAT--TATA
*
44798252 AAAATTATG
1 AAAATTATA
44798261 AAAA-TATA
1 AAAATTATA
44798269 ACAAATTATA
1 A-AAATTATA
44798279 TTTTATGGTT
Statistics
Matches: 83, Mismatches: 15, Indels: 21
0.70 0.13 0.18
Matches are distributed among these distances:
8 4 0.05
9 29 0.35
10 33 0.40
11 11 0.13
12 3 0.04
13 3 0.04
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:44807538 original size:15 final size:14
Alignment explanation
Indices: 44807519--44807562 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
44807509 TTTTTCATAA
44807519 ATTATATTTTAGTT
1 ATTATATTTTAGTT
* **
44807533 ATTTATATTTAAAAT
1 A-TTATATTTTAGTT
44807548 ATTATATTTTAGTT
1 ATTATATTTTAGTT
44807562 A
1 A
44807563 AATTATTATG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (14 bp):
ATTATATTTTAGTT
Found at i:44807988 original size:31 final size:30
Alignment explanation
Indices: 44807950--44808025 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 30
44807940 AATTAACAGC
44807950 TAAGTGACTAAAATGTTACAACATGTT-AAT-A
1 TAAGTGACTAAAATGTT--AACAT-TTCAATCA
*
44807981 TAAGTGACTAAAACG-TAACATTTCAATCA
1 TAAGTGACTAAAATGTTAACATTTCAATCA
*
44808010 TAAGTGATTAAAATGT
1 TAAGTGACTAAAATGT
44808026 AATCTGAGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 2 0.05
28 8 0.21
29 14 0.36
30 1 0.03
31 14 0.36
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (30 bp):
TAAGTGACTAAAATGTTAACATTTCAATCA
Found at i:44812949 original size:20 final size:20
Alignment explanation
Indices: 44812921--44812964 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
44812911 AAATAATTTT
*
44812921 AAAATATTCA-AAAAATACAA
1 AAAAAATTCATAAAAATA-AA
44812941 AAAAAATTCATAAAAATAAA
1 AAAAAATTCATAAAAATAAA
44812961 AAAA
1 AAAA
44812965 TAGCATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAAAATTCATAAAAATAAA
Found at i:44813139 original size:22 final size:22
Alignment explanation
Indices: 44813111--44813156 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
44813101 AGAGCCTAAT
44813111 TTAAATT-AAAAAATCATAAATG
1 TTAAATTAAAAAAAT-ATAAATG
44813133 TTAAATTGACAAAAAATATAAATG
1 TTAAATT-A-AAAAAATATAAATG
44813157 ATAAGAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 7 0.33
24 7 0.33
25 7 0.33
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (22 bp):
TTAAATTAAAAAAATATAAATG
Found at i:44815288 original size:15 final size:15
Alignment explanation
Indices: 44815268--44815303 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
44815258 ATATCTAGTA
44815268 TATTATAGTGAAGTT
1 TATTATAGTGAAGTT
44815283 TATTATAGTGAAGTT
1 TATTATAGTGAAGTT
44815298 T-TTATA
1 TATTATA
44815304 CTCCACAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (15 bp):
TATTATAGTGAAGTT
Found at i:44820471 original size:9 final size:9
Alignment explanation
Indices: 44820459--44820487 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
44820449 AATTTAAATT
44820459 ATTTTTCGA
1 ATTTTTCGA
44820468 ATTTTTCGA
1 ATTTTTCGA
44820477 ATTTTTCGA
1 ATTTTTCGA
44820486 AT
1 AT
44820488 CAAATCGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.55
Consensus pattern (9 bp):
ATTTTTCGA
Found at i:44831560 original size:15 final size:16
Alignment explanation
Indices: 44831535--44831566 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
44831525 TAATATTAAT
44831535 TTTATTTTATTATTTA
1 TTTATTTTATTATTTA
44831551 TTTA-TTTATTATTTA
1 TTTATTTTATTATTTA
44831566 T
1 T
44831567 GAATATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTATTTTATTATTTA
Found at i:44831600 original size:60 final size:60
Alignment explanation
Indices: 44831476--44831647 Score: 194
Period size: 60 Copynumber: 2.9 Consensus size: 60
44831466 ATTATTTTTA
* * *
44831476 TTTATTTATTTATTTA-TTATTATTTTTATGAACATAAATAAATATAAAATAATATTAATTTTAT
1 TTTA-TTATTTATTTATTTATTA--TTTATGAA-ATAAATAAATA-AATATAATAATAATATTAT
*
44831540 TTTATTATTTATTTATTTATTATTTATGAATATAAATAAATAAATGTAA-AATAATATTAT
1 TTTATTATTTATTTATTTATTATTTATGAA-ATAAATAAATAAATATAATAATAATATTAT
*
44831600 TTT-TTTTATTATTTATTTATTA-TTAT-AAATAAATAAATAAATA-AATAA
1 TTTATTAT-TTATTTATTTATTATTTATGAAATAAATAAATAAATATAATAA
44831648 CAAACCAAAA
Statistics
Matches: 98, Mismatches: 7, Indels: 13
0.83 0.06 0.11
Matches are distributed among these distances:
56 2 0.02
57 16 0.16
58 2 0.02
59 7 0.07
60 26 0.27
61 5 0.05
62 19 0.19
63 11 0.11
64 10 0.10
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.53
Consensus pattern (60 bp):
TTTATTATTTATTTATTTATTATTTATGAAATAAATAAATAAATATAATAATAATATTAT
Found at i:44831623 original size:71 final size:72
Alignment explanation
Indices: 44831458--44831623 Score: 188
Period size: 66 Copynumber: 2.4 Consensus size: 72
44831448 ATTCATTCCA
***
44831458 ATTTTCTTATTATT-TTTATTTATTTATTTATTTATTATTATTTTTATGAACATAAATAAATATA
1 ATTTT-TT-TTATTATTTATTTA-TTATTTATTTATTATTATGAATATGAACATAAATAAATATA
44831522 AAATAATATT
63 AAATAATATT
*
44831532 AATTTTATTTTATTATTTA--T-TTATTTA-TTA-T-TTATGAATAT-AA-ATAAATAAATGTAA
1 -ATTTT-TTTTATTATTTATTTATTATTTATTTATTATTATGAATATGAACATAAATAAATATAA
44831589 AATAATATT
64 AATAATATT
44831598 ATTTTTTTTATTATTTATTTATTATT
1 ATTTTTTTTATTATTTATTTATTATT
44831624 ATAAATAAAT
Statistics
Matches: 82, Mismatches: 5, Indels: 16
0.80 0.05 0.16
Matches are distributed among these distances:
64 12 0.15
65 5 0.06
66 23 0.28
67 7 0.09
68 7 0.09
69 1 0.01
70 3 0.04
71 7 0.09
73 1 0.01
74 5 0.06
75 11 0.13
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (72 bp):
ATTTTTTTTATTATTTATTTATTATTTATTTATTATTATGAATATGAACATAAATAAATATAAAA
TAATATT
Found at i:44836647 original size:6 final size:6
Alignment explanation
Indices: 44836638--44836696 Score: 55
Period size: 6 Copynumber: 9.0 Consensus size: 6
44836628 AAAAAATTAA
* *
44836638 AAAAAG AAAAAAG AAAAAAAG ACAAAG AAAAGG AAAAAG AAGAAAAG AAAAAG
1 AAAAAG -AAAAAG --AAAAAG AAAAAG AAAAAG AAAAAG -A-AAAAG AAAAAG
44836691 AAAAAG
1 AAAAAG
44836697 GGGAGGTCGA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
6 25 0.56
7 8 0.18
8 12 0.27
ACGTcount: A:0.80, C:0.02, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:44836647 original size:8 final size:8
Alignment explanation
Indices: 44836618--44836689 Score: 58
Period size: 8 Copynumber: 8.6 Consensus size: 8
44836608 AAATTTCAAA
44836618 AAAAAAAG
1 AAAAAAAG
*
44836626 ATAAAAAATT
1 A-AAAAAA-G
44836636 AAAAAAAG
1 AAAAAAAG
44836644 -AAAAAAG
1 AAAAAAAG
44836651 AAAAAAAG
1 AAAAAAAG
44836659 ACAAAGAAA-
1 A-AAA-AAAG
*
44836668 AGGAAAAAG
1 A-AAAAAAG
*
44836677 AAGAAAAG
1 AAAAAAAG
44836685 AAAAA
1 AAAAA
44836690 GAAAAAGGGG
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
7 7 0.14
8 21 0.41
9 19 0.37
10 4 0.08
ACGTcount: A:0.81, C:0.01, G:0.14, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:44836647 original size:15 final size:15
Alignment explanation
Indices: 44836636--44836695 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 15
44836626 ATAAAAAATT
44836636 AAAAAAAGAAAAAAG
1 AAAAAAAGAAAAAAG
*
44836651 AAAAAAAG-ACAAAG
1 AAAAAAAGAAAAAAG
*
44836665 ---AAAAGGAAAAAG
1 AAAAAAAGAAAAAAG
*
44836677 AAGAAAAG-AAAAAG
1 AAAAAAAGAAAAAAG
44836691 AAAAA
1 AAAAA
44836696 GGGGAGGTCG
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
11 5 0.13
12 5 0.13
14 15 0.39
15 13 0.34
ACGTcount: A:0.82, C:0.02, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:44836657 original size:26 final size:26
Alignment explanation
Indices: 44836615--44836694 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 26
44836605 AAGAAATTTC
* **
44836615 AAAA-AAAAAAGATAAAAAATTAAA-
1 AAAAGAAAAAAGAAAAAAAAAAAAAG
* *
44836639 AAAAGAAAAAAGAAAAAAAGACAAAG
1 AAAAGAAAAAAGAAAAAAAAAAAAAG
* * *
44836665 AAAAGGAAAAAGAAGAAAAGAAAAAG
1 AAAAGAAAAAAGAAAAAAAAAAAAAG
44836691 AAAA
1 AAAA
44836695 AGGGGAGGTC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 4 0.09
25 16 0.34
26 27 0.57
ACGTcount: A:0.81, C:0.01, G:0.14, T:0.04
Consensus pattern (26 bp):
AAAAGAAAAAAGAAAAAAAAAAAAAG
Found at i:44836696 original size:20 final size:20
Alignment explanation
Indices: 44836639--44836696 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
44836629 AAAAATTAAA
44836639 AAAAGAAAAAAGAAAAA-AAG
1 AAAAG-AAAAAGAAAAAGAAG
*
44836659 ACAAAGAAAAGGAAAAAGAAG
1 A-AAAGAAAAAGAAAAAGAAG
44836680 AAAAGAAAAAGAAAAAG
1 AAAAGAAAAAGAAAAAG
44836697 GGGAGGTCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 26 0.76
21 8 0.24
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (20 bp):
AAAAGAAAAAGAAAAAGAAG
Found at i:44837713 original size:40 final size:40
Alignment explanation
Indices: 44837606--44838067 Score: 460
Period size: 40 Copynumber: 11.6 Consensus size: 40
44837596 AGAACAACAA
* *
44837606 ATCTTTTACCCCGATCATGGGGCAGATTGAAGA-AATCCA
1 ATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCG
* * *
44837645 ATCTTTTACCCCTAACCA-GAGGCAAGATTGAAGACCATCCG
1 ATCTTTTACCCC-GATCATGGGGC-AGATTGAAGACCATCCG
* *
44837686 ATCTTTTACCCCGATCATGGGGCAGATTGAAGA-AATCCA
1 ATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCG
* * * *
44837725 ATCTTTTAACCCTAACA-GAAGGCAAGATTGAAGACCATCCG
1 ATCTTTTACCCCGATCATG-GGGC-AGATTGAAGACCATCCG
* * *
44837766 ATCTTTTACCCCGATCATGGGGCAAATTGAAGA-AATCCA
1 ATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCG
** * *
44837805 ATCTTTTACCCTAACCA-AGGGCAAGATTGAAGACCATCCG
1 ATCTTTTACCCCGATCATGGGGC-AGATTGAAGACCATCCG
44837845 ATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCG
1 ATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCG
* *
44837885 ATCTTTTACCGCCGATCAT-GGGCAGATTGAAGA-AATCCA
1 ATCTTTTACC-CCGATCATGGGGCAGATTGAAGACCATCCG
* * *
44837924 ATCTTTTA-CCCTAAC-TAGAGGGCAAGATTGAAGACCATCTG
1 ATCTTTTACCCCGATCAT-G-GGGC-AGATTGAAGACCATCCG
* *
44837965 ATCTTTTACCCCGATCATGGGGCAGATTGAAGA-AATCCA
1 ATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCG
** * ** *
44838004 ATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCAG
1 ATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCG
* * *
44838044 ATCTCTTACCTCGACCATGGGGCA
1 ATCTTTTACCCCGATCATGGGGCA
44838068 AGTTGAAACA
Statistics
Matches: 343, Mismatches: 60, Indels: 39
0.78 0.14 0.09
Matches are distributed among these distances:
36 1 0.00
37 4 0.01
38 6 0.02
39 111 0.32
40 145 0.42
41 68 0.20
42 7 0.02
43 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (40 bp):
ATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCG
Found at i:44837832 original size:119 final size:120
Alignment explanation
Indices: 44837605--44838014 Score: 433
Period size: 119 Copynumber: 3.4 Consensus size: 120
44837595 TAGAACAACA
* * * * * * * *
44837605 AATCTTTTACCCCGATCATGGGGCAGATTGAAGA-AATCCAATCTTTTACCCCTAACCA-GAGGC
1 AATCTTTTAACCCGAACATGAGGCAGATTGAAGACCATCCGATCTTTTACCCC-GATCATGGGGC
* * ** *
44837668 AAGATTGAAGACCATCCGATCTTTTACCCCGATCATG-GGGC-AGATTGAAGA-AATCC
65 AA-ATTGAAGA-AATCCAATCTTTTACCCTAACCA-GAGGGCAAGATTGAAGACAATCC
*
44837724 AATCTTTTAACCCTAACA-GAAGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGG
1 AATCTTTTAACCCGAACATG-AGGC-AGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGG
*
44837788 CAAATTGAAGAAATCCAATCTTTTACCCTAACCA-AGGGCAAGATTGAAGACCATCC
64 CAAATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACAATCC
* * * *
44837844 GATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCGATCTTTTACCGCCGATCAT-GGGC
1 AATCTTTTAACCCGAACATGAGGCAGATTGAAGACCATCCGATCTTTTACC-CCGATCATGGGGC
* * * *
44837908 AGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCT
65 AAATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACAATCC
* * * * * *
44837964 GATCTTTTACCCCGATCATGGGGCAGATTGAAGA-AATCCAATCTTTTACCC
1 AATCTTTTAACCCGAACATGAGGCAGATTGAAGACCATCCGATCTTTTACCC
44838015 TAACCAAAGG
Statistics
Matches: 256, Mismatches: 25, Indels: 21
0.85 0.08 0.07
Matches are distributed among these distances:
118 6 0.02
119 122 0.48
120 105 0.41
121 23 0.09
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (120 bp):
AATCTTTTAACCCGAACATGAGGCAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCA
AATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACAATCC
Found at i:44837950 original size:199 final size:199
Alignment explanation
Indices: 44837625--44838067 Score: 707
Period size: 199 Copynumber: 2.2 Consensus size: 199
44837615 CCCGATCATG
* * * *
44837625 GGGCAGATTGAAGA-AATCCAATCTTTTACCCCTAACCA-GAGGCAAGATTGAAGACCATCCGAT
1 GGGCAGATTGAAGACCATCCGATCTTTTACCCC-GACCATGGGGC-AGATTGAAGACCATCCGAT
44837688 CTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTAACCCTAACAGAAGGCAAGAT
64 CTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTAACCCTAACAGAAGGCAAGAT
44837753 TGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTA
129 TGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTA
44837818 ACC-AA
194 ACCAAA
*
44837823 GGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCGATC
1 GGGC-AGATTGAAGACCATCCGATCTTTTACCCCGACCATGGGGCAGATTGAAGACCATCCGATC
*
44837888 TTTTACCGCCGATCAT-GGGCAGATTGAAGAAATCCAATCTTTT-ACCCTAACTAGAGGGCAAGA
65 TTTTACC-CCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTAACCCTAAC-AGAAGGCAAGA
* *
44837951 TTGAAGACCATCTGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCT
128 TTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCT
44838016 AACCAAA
193 AACCAAA
* * *
44838023 GGGCAGATTGAAGACCATCAGATCTCTTACCTCGACCATGGGGCA
1 GGGCAGATTGAAGACCATCCGATCTTTTACCCCGACCATGGGGCA
44838068 AGTTGAAACA
Statistics
Matches: 227, Mismatches: 12, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
198 12 0.05
199 181 0.80
200 34 0.15
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.24
Consensus pattern (199 bp):
GGGCAGATTGAAGACCATCCGATCTTTTACCCCGACCATGGGGCAGATTGAAGACCATCCGATCT
TTTACCCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTAACCCTAACAGAAGGCAAGATTG
AAGACCATCCGATCTTTTACCCCGATCATGGGGCAAATTGAAGAAATCCAATCTTTTACCCTAAC
CAAA
Found at i:44838097 original size:80 final size:79
Alignment explanation
Indices: 44837823--44838093 Score: 323
Period size: 79 Copynumber: 3.4 Consensus size: 79
44837813 CCCTAACCAA
* * ** * ** *
44837823 GGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGACCATCCGATC
1 GGGC-AGATTGAAGA-AATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCAGATC
44837888 TTTTACCGCCGATCAT-
64 TTTTACC-CCGATCATG
* * *
44837904 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCT
1 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGC-AGATTGAAGACCATCAGATCT
44837969 TTTACCCCGATCATG
65 TTTACCCCGATCATG
*
44837984 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCAGATCTC
1 GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCAGATCTT
* *
44838049 TTACCTCGACCATG
66 TTACCCCGATCATG
**
44838063 GGGCA-AGTTGAA-ACAATATAATCTTTTACCC
1 GGGCAGA-TTGAAGA-AATCCAATCTTTTACCC
44838094 CTAAAGTTAT
Statistics
Matches: 169, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
78 2 0.01
79 86 0.51
80 77 0.46
81 4 0.02
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (79 bp):
GGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAAAGGGCAGATTGAAGACCATCAGATCTT
TTACCCCGATCATG
Found at i:44838761 original size:67 final size:63
Alignment explanation
Indices: 44838627--44838793 Score: 202
Period size: 67 Copynumber: 2.7 Consensus size: 63
44838617 CTTATTATTT
44838627 TTATTTATTTATTTATTATTTTTATGAACATAAATAAAT--A-TAATAATATTAATTTTATTTAA
1 TTATTTATTTATTTATTA-TTTTATGAA-ATAAATAAATAAATTAATAATATTAATTTTATTTAA
*
44838689 TTATTTATTTATTTATTATTTTATGAATATAAATAAATAAATGTAAAATAATATTAATTTTGTTT
1 TTATTTATTTATTTATTATTTTATGAA-ATAAATAAATAAAT-T--AATAATATTAATTTTATTT
*
44838754 TA
62 AA
**
44838756 TTATTTATTTA-TTATTA-TAAAT-AAATAAATAAATAAAT
1 TTATTTATTTATTTATTATTTTATGAAATAAATAAATAAAT
44838794 AACAAACCAA
Statistics
Matches: 94, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
61 19 0.20
62 18 0.19
63 15 0.16
64 2 0.02
65 4 0.04
66 6 0.06
67 30 0.32
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (63 bp):
TTATTTATTTATTTATTATTTTATGAAATAAATAAATAAATTAATAATATTAATTTTATTTAA
Found at i:44840163 original size:58 final size:57
Alignment explanation
Indices: 44839973--44840163 Score: 172
Period size: 58 Copynumber: 3.3 Consensus size: 57
44839963 GTTTTTAGGG
*
44839973 GTAAAATGGTAATTTTT-GTGAAATCGGGACTAAAAATGGAATTTGGAAAGTTTGGG-
1 GTAAAATGGTAATTTTTGGTGAAATCGGG-GTAAAAATGGAATTTGGAAAGTTTGGGA
* * * * * ** * *
44840029 GAAAAAATGGTAAATCTTGGTAAAAACAAGGTCAAAAATGAAATTTGGAAAG-TTCGGA
1 G-TAAAATGGTAATTTTTGGTGAAATCGGGGT-AAAAATGGAATTTGGAAAGTTTGGGA
* * * * * *
44840087 GGCAAAACGGTAAGTTTTGGTGAAATCGGGGTTAAAATGGGATTTAGGGAAGTTTGGGA
1 -GTAAAATGGTAATTTTTGGTGAAATCGGGGTAAAAATGGAATTT-GGAAAGTTTGGGA
44840146 GTAAAATGGTAATTTTTG
1 GTAAAATGGTAATTTTTG
44840164 AAAGTTTTGG
Statistics
Matches: 102, Mismatches: 26, Indels: 12
0.73 0.19 0.09
Matches are distributed among these distances:
56 1 0.01
57 28 0.27
58 67 0.66
59 6 0.06
ACGTcount: A:0.38, C:0.05, G:0.29, T:0.29
Consensus pattern (57 bp):
GTAAAATGGTAATTTTTGGTGAAATCGGGGTAAAAATGGAATTTGGAAAGTTTGGGA
Found at i:44840182 original size:30 final size:30
Alignment explanation
Indices: 44840139--44840517 Score: 392
Period size: 30 Copynumber: 12.7 Consensus size: 30
44840129 TTTAGGGAAG
*
44840139 TTTGGGAGT-AAAATGGTAATTTTTG-AAAGT
1 TTTGGG-GTCAAAAT-GTAATTTTGGAAAAGT
* *
44840169 TTTGGGGTCAAAATATAATTTTAGAAAAG-
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
44840198 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
* *
44840228 TTCGGGGTTAAAAATGTAA-TTTGGAAAAGT
1 TTTGGGG-TCAAAATGTAATTTTGGAAAAGT
* * * *
44840258 TTCGAGGTTAAAATGT-ATTTTGGAAAAAT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
** *
44840287 TTTAAGGTCAAAATGTAATTTTAGAAAAGT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
* * *
44840317 TTTAGGGTTAAAATGTATTTTTGGAAAAGT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
*
44840347 TTTAGGGTCAAAATGTAATTTTAGG-AAAGT
1 TTTGGGGTCAAAATGTAATTTT-GGAAAAGT
*
44840377 TTTGGGGTTAAAATGTAATTTTGGAAAAGT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
*
44840407 TTTAGGGTCAAAATGTAATTTTGGAAAAGT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
*** * **
44840437 TAAAGGGTTAAAATGTAATTTTCAAAAAGT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
* * * ** *
44840467 TTTGGGTTAAAAATATAATTTTCAAAAAAT
1 TTTGGGGTCAAAATGTAATTTTGGAAAAGT
**
44840497 TTTGGGGTTGAAATGTAATTT
1 TTTGGGGTCAAAATGTAATTT
44840518 CTAGATAATT
Statistics
Matches: 301, Mismatches: 40, Indels: 16
0.84 0.11 0.04
Matches are distributed among these distances:
28 1 0.00
29 70 0.23
30 218 0.72
31 12 0.04
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.38
Consensus pattern (30 bp):
TTTGGGGTCAAAATGTAATTTTGGAAAAGT
Found at i:44842360 original size:17 final size:17
Alignment explanation
Indices: 44842340--44842373 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
44842330 TTAAATAAAT
*
44842340 CTTAAAATTAATTCAAA
1 CTTAAAATAAATTCAAA
*
44842357 CTTAATATAAATTCAAA
1 CTTAAAATAAATTCAAA
44842374 AAAATCTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
CTTAAAATAAATTCAAA
Found at i:44842735 original size:92 final size:93
Alignment explanation
Indices: 44842515--44843052 Score: 781
Period size: 92 Copynumber: 5.8 Consensus size: 93
44842505 AGTAGGGTTT
* * * * * *
44842515 GATGTCGG-GTTTTATCTTGCT-TTACTTCAATTTTTCAGAGAGATAAAGACTTGATATCCATCT
1 GATGTCGGTGCTTCATCTTGCTCTTACTTCAA--CTTCAGAGAGACAAAGGCTTGATATCCAGCT
* * * *
44842578 TTACAAT-AACTTCAA-A-AGGGTAGGAAAA
64 CTAC-TTCAATTTCAAGAGAGGATAGGAAAA
* * *
44842606 GATGTCGGTGCTTCGTCTTGTTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATATCCAGCTCT
1 GATGTCGGTGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATATCCAGCTCT
44842671 ACTTCAATTTCAAGAGAGGATAGGAAAA
66 ACTTCAATTTCAAGAGAGGATAGGAAAA
*
44842699 GAT-TCGGTGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATATTCAGCTCT
1 GATGTCGGTGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATATCCAGCTCT
44842763 ACTTCAATTTCAAGAGAGGATAGGAAAA
66 ACTTCAATTTCAAGAGAGGATAGGAAAA
*
44842791 GATGTCGGTGCTTCATCTTGTTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATATCCAGCTCT
1 GATGTCGGTGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATATCCAGCTCT
44842856 ACTTCAATTTC-A-AGAGGATA-GAGAAA
66 ACTTCAATTTCAAGAGAGGATAGGA-AAA
* *
44842882 GATGTCGGTGCTTCATCTTGCTCTTACTTTAACTTCAGAGAGACAAAGGCTTGATATCTAGCTCT
1 GATGTCGGTGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATATCCAGCTCT
* *
44842947 ACTTCAATTTCAAGAG-GAATAGGAAAG
66 ACTTCAATTTCAAGAGAGGATAGGAAAA
* *
44842974 GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGGCTTGATATCCAGCTCT
1 GATGTCGGTGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATATCCAGCTCT
44843039 ACTTCAATTTCAAG
66 ACTTCAATTTCAAG
44843053 CGGTTAGGAA
Statistics
Matches: 411, Mismatches: 26, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
90 3 0.01
91 130 0.32
92 181 0.44
93 97 0.24
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (93 bp):
GATGTCGGTGCTTCATCTTGCTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATATCCAGCTCT
ACTTCAATTTCAAGAGAGGATAGGAAAA
Found at i:44843013 original size:183 final size:183
Alignment explanation
Indices: 44842598--44843063 Score: 785
Period size: 183 Copynumber: 2.5 Consensus size: 183
44842588 TTCAAAAGGG
*
44842598 TAGGAAAAGATGTCGGTGCTTCGTCTTGTTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATAT
1 TAGGAAAAGATGTCGGTGCTTCATCTTGTTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATAT
44842663 CCAGCTCTACTTCAATTTCAAGAGAGGATAGGAAAAGATTCGGTGCTTCATCTTGCTCTTACTTC
66 CCAGCTCTACTTCAATTTC-A-AGAGGATAGGAAAAGATTCGGTGCTTCATCTTGCTCTTACTTC
*
44842728 AACTTCAGAGAGACAAAGGCTTGATATTCAGCTCTACTTCAATTTCAAGAGAGGA
129 AACTTCAGAGAGACAAAGGCTTGATATTCAGCTCTACTTCAATTTCAAGAGAGAA
*
44842783 TAGGAAAAGATGTCGGTGCTTCATCTTGTTCTTACTTCAACTTCAGAGAGACAAAGGCTTGATAT
1 TAGGAAAAGATGTCGGTGCTTCATCTTGTTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATAT
*
44842848 CCAGCTCTACTTCAATTTCAAGAGGATA-GAGAAAGATGTCGGTGCTTCATCTTGCTCTTACTTT
66 CCAGCTCTACTTCAATTTCAAGAGGATAGGA-AAAGAT-TCGGTGCTTCATCTTGCTCTTACTTC
44842912 AACTTCAGAGAGACAAAGGCTTGATA-TCTAGCTCTACTTCAATTTCAAGAG-GAA
129 AACTTCAGAGAGACAAAGGCTTGATATTC-AGCTCTACTTCAATTTCAAGAGAGAA
* * *
44842966 TAGGAAAGGATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGGCTTGATAT
1 TAGGAAAAGATGTCGGTGCTTCATCTTGTTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATAT
* *
44843031 CCAGCTCTACTTCAATTTCAAGCGGTTAGGAAA
66 CCAGCTCTACTTCAATTTCAAGAGGATAGGAAA
44843064 TGATCTTGCT
Statistics
Matches: 267, Mismatches: 10, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
182 2 0.01
183 107 0.40
184 76 0.28
185 82 0.31
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (183 bp):
TAGGAAAAGATGTCGGTGCTTCATCTTGTTCTTACTTCAATTTCAGAGAGACAAAGGCTTGATAT
CCAGCTCTACTTCAATTTCAAGAGGATAGGAAAAGATTCGGTGCTTCATCTTGCTCTTACTTCAA
CTTCAGAGAGACAAAGGCTTGATATTCAGCTCTACTTCAATTTCAAGAGAGAA
Found at i:44843116 original size:76 final size:75
Alignment explanation
Indices: 44842988--44843879 Score: 956
Period size: 76 Copynumber: 12.1 Consensus size: 75
44842978 TCGGTGCTTC
* * *
44842988 ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAG
*
44843053 CGGTTAGGAAATG
64 -GGATAGGAAATG
* * *
44843066 ATCTTGCTCTTACTTCAATTTCAGAGATGAAGGCTTGATATCCAACTCTACTTCAATTTCAA--G
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGGG
*
44843129 --CGG--ATG
66 ATAGGAAATG
44843135 --CGTTG-TCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGC
1 ATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAG-
*
44843197 GGATAGGAAAAG
64 GGATAGGAAATG
* *
44843209 ATCTTGCTCTTACTTCAATTTCAGAGATAAAAGACTAGATATCCAACTCTACTTCAATTTCAAGA
1 ATCTTGCTCTTACTTCAATTTCAGAGAT-AAAGACTTGTTATCCAACTCTACTTCAATTTCAAG-
44843274 GGATAGGAAATG
64 GGATAGGAAATG
* * * * *
44843286 ATCTTGCTCTTACTTCATTTTCAGAGATAAAGACCTGATATCCAGCTTTACTTCAATTTCAA-GG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGGG
44843350 ATAGGAAATG
66 ATAGGAAATG
* * * * * *
44843360 ATCTTGCTTTTACTTCATTTTTCGGAGATAAAGACCTGTTATCTAGCT-TCACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCA-ATTTCAGAGATAAAGACTTGTTATCCAACTCT-ACTTCAATTTCAAG
44843424 AGGATAGGAAATG
64 -GGATAGGAAATG
* * *
44843437 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAG-G
44843502 GATAGGAAATG
65 GATAGGAAATG
* * *
44843513 ATCTTGCTCTTACTTCAATTTCAGAGAGTAAAGACATGTTATCCAGCTTTACTTCAATTTCAAGA
1 ATCTTGCTCTTACTTCAATTTCAGAGA-TAAAGACTTGTTATCCAACTCTACTTCAATTTCAAG-
44843578 GGATAGGAAATG
64 GGATAGGAAATG
* *
44843590 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGAC--G-TGTCC-ATTCTATTCTTCAATTTCAA-
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTA--CTTCAATTTCAAG
*
44843650 GG---GG--ACG
64 GGATAGGAAATG
*
44843657 A-CGTTGCTCTTACTTCAATTTCAGAGAGATAAAGACATGTTATCC-ACTCTACTTCAATTTCAA
1 ATC-TTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
44843720 -GG---GG--ATG
63 GGGATAGGAAATG
* * **
44843727 A-CATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTT-AATTTCAATT
1 ATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGG
* *
44843789 CA-AGCG-GATG
65 GATAG-GAAATG
* * *
44843799 -GCATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGC
1 ATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAG-
*
44843862 GGATTGGAAATG
64 GGATAGGAAATG
44843874 ATCTTG
1 ATCTTG
44843880 TTTGGTCTGA
Statistics
Matches: 732, Mismatches: 45, Indels: 77
0.86 0.05 0.09
Matches are distributed among these distances:
66 1 0.00
67 83 0.11
68 31 0.04
69 17 0.02
70 41 0.06
71 4 0.01
72 70 0.10
73 13 0.02
74 46 0.06
75 50 0.07
76 179 0.24
77 175 0.24
78 22 0.03
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (75 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGGG
ATAGGAAATG
Found at i:44843266 original size:77 final size:75
Alignment explanation
Indices: 44843140--44843879 Score: 829
Period size: 77 Copynumber: 10.0 Consensus size: 75
44843130 GGATGCGTTG
*
44843140 TCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGCGGATAGGA
1 TCTTACTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGA
*
44843205 AAAGATCTTGC
65 AATGATCTTGC
*
44843216 TCTTACTTCAATTTCAGAGATAAAAGACTAGATATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 TCTTACTTCAATTTCAGAGAT-AAAGACT-GTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
44843281 AAATGATCTTGC
64 AAATGATCTTGC
* * * *
44843293 TCTTACTTCATTTTCAGAGATAAAGACCTGATATCCAGCTTTACTTCAATTTC-A-AGGATAGGA
1 TCTTACTTCAATTTCAGAGATAAAGA-CTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGA
44843356 AATGATCTTGC
65 AATGATCTTGC
* * * * *
44843367 TTTTACTTCATTTTTCGGAGATAAAGACCTGTTATCTAGCT-TCACTTCAATTTCAAGAGGATAG
1 TCTTACTTCA-ATTTCAGAGATAAAGA-CTGTTATCCAACTCT-ACTTCAATTTCAAGAGGATAG
44843431 GAAATGATCTTGC
63 GAAATGATCTTGC
* *
44843444 TCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAAGAGGATAGGA
1 TCTTACTTCAATTTCAGAGATAAAGA-CTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGA
44843509 AATGATCTTGC
65 AATGATCTTGC
* *
44843520 TCTTACTTCAATTTCAGAGAGTAAAGACATGTTATCCAGCTTTACTTCAATTTCAAGAGGATAGG
1 TCTTACTTCAATTTCAGAGA-TAAAGAC-TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
44843585 AAATGATCTTGC
64 AAATGATCTTGC
* *
44843597 TCTTACTTCAATTTCAGAGATAAAGAC-G-TGTCC-ATTCTATTCTTCAATTTC-A-AGG---GG
1 TCTTACTTCAATTTCAGAGATAAAGACTGTTATCCAACTCTA--CTTCAATTTCAAGAGGATAGG
*
44843654 --ACGA-CGTTGC
64 AAATGATC-TTGC
44843664 TCTTACTTCAATTTCAGAGAGATAAAGACATGTTATCC-ACTCTACTTCAATTTC-A-AGG---G
1 TCTTACTTCAATTTC--AGAGATAAAGAC-TGTTATCCAACTCTACTTCAATTTCAAGAGGATAG
44843723 G--ATGA-CATTGC
63 GAAATGATC-TTGC
* ***
44843734 TCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTT-AATTTCAA-TTCA-AGCG
1 TCTTACTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTCTACTTCAATTTCAAGAGGATAG-G
* *
44843795 -GATG-GCATTGC
64 AAATGATC-TTGC
* * *
44843806 TCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGCGGATTGGA
1 TCTTACTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGA
44843870 AATGATCTTG
65 AATGATCTTG
44843880 TTTGGTCTGA
Statistics
Matches: 601, Mismatches: 34, Indels: 59
0.87 0.05 0.09
Matches are distributed among these distances:
66 1 0.00
67 28 0.05
68 29 0.05
69 14 0.02
70 40 0.07
71 2 0.00
72 69 0.11
73 13 0.02
74 43 0.07
75 46 0.08
76 140 0.23
77 176 0.29
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (75 bp):
TCTTACTTCAATTTCAGAGATAAAGACTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
ATGATCTTGC
Found at i:44843602 original size:153 final size:150
Alignment explanation
Indices: 44842988--44843879 Score: 965
Period size: 153 Copynumber: 6.0 Consensus size: 150
44842978 TCGGTGCTTC
* * * *
44842988 ATCTTGCTCTTACTTCAATTTCAGAGAGATAAAGGCTTGATATCCAGCTCTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTC--AGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAA-
* * * * * *
44843053 CGGTTAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATGAAGGCTTGATATCCAACTCTACT
63 AGGATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCC-ACTCTACT
* *
44843118 TCAATTTCAAGCGGAT--G---CG
127 TCAATTTCAAGAGGATAGGAAATG
* * * *
44843137 ---TTG-TCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAA-AG
* *
44843198 GATAGGAAAAGATCTTGCTCTTACTTCAATTTCAGAGATAAAAGAC-TAGATATCCAACTCTACT
65 GATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGAT-AAAGACAT-GTTATCC-ACTCTACT
44843262 TCAATTTCAAGAGGATAGGAAATG
127 TCAATTTCAAGAGGATAGGAAATG
* *
44843286 ATCTTGCTCTTACTTCATTTTCAGAGATAAAGACCTGATATCCAGCTTTACTTCAATTTC-AAGG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAAAGG
* * * * *
44843350 ATAGGAAATGATCTTGCTTTTACTTCATTTTTCGGAGATAAAGACCTGTTATCTAGCT-TCACTT
66 ATAGGAAATGATCTTGCTCTTACTTCA-ATTTCAGAGATAAAGACATGTTATCCA-CTCT-ACTT
44843414 CAATTTCAAGAGGATAGGAAATG
128 CAATTTCAAGAGGATAGGAAATG
44843437 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAA-AG
*
44843502 GATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGAGTAAAGACATGTTATCCAGCTTTACTT
65 GATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGA-TAAAGACATGTTATCCA-CTCTACTT
44843567 CAATTTCAAGAGGATAGGAAATG
128 CAATTTCAAGAGGATAGGAAATG
* *
44843590 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGA-C-G-TGTCCATTCTATT-CTTCAATTTC-AA
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCA-GCT-TTACTTCAATTTCAAA
*
44843650 GG---GG--ACGA-CGTTGCTCTTACTTCAATTTCAGAGAGATAAAGACATGTTATCCACTCTAC
64 GGATAGGAAATGATC-TTGCTCTTACTTCAATTTC--AGAGATAAAGACATGTTATCCACTCTAC
44843709 TTCAATTTC-A-AGG---GG--ATG
126 TTCAATTTCAAGAGGATAGGAAATG
* * * **
44843727 A-CATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCA-CTCTACTT-AATTTCAATT
1 ATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAAAG
* * * * *
44843789 CA-AGCG-GATG-GCATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTT
65 GATAG-GAAATGATC-TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTCTACTT
* *
44843851 CAATTTCAAGCGGATTGGAAATG
128 CAATTTCAAGAGGATAGGAAATG
44843874 ATCTTG
1 ATCTTG
44843880 TTTGGTCTGA
Statistics
Matches: 656, Mismatches: 44, Indels: 88
0.83 0.06 0.11
Matches are distributed among these distances:
136 1 0.00
137 40 0.06
138 6 0.01
139 3 0.00
140 41 0.06
141 2 0.00
142 27 0.04
143 80 0.12
144 71 0.11
145 34 0.05
146 11 0.02
147 7 0.01
148 1 0.00
149 4 0.01
150 8 0.01
151 138 0.21
152 26 0.04
153 155 0.24
154 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (150 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACCTGTTATCCAGCTTTACTTCAATTTCAAAGG
ATAGGAAATGATCTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTCTACTTCAA
TTTCAAGAGGATAGGAAATG
Found at i:44843673 original size:31 final size:31
Alignment explanation
Indices: 44843593--44843749 Score: 89
Period size: 31 Copynumber: 4.6 Consensus size: 31
44843583 GGAAATGATC
***
44843593 TTGCTCTTACTTCAATTTCAGAGATAAAGACG
1 TTGCTCTTACTTCAATTTCA-AGGGGAAGACG
* * *
44843625 TGTCCATTCTATTCTTCAATTTCAAGGGGACGACG
1 T-TGC--TCT-TACTTCAATTTCAAGGGGAAGACG
**
44843660 TTGCTCTTACTTCAATTTCAGAGAGATAAAGACATG
1 TTGCTCTTACTTCAATTTCA-AG-G-GGAAGAC--G
* * * *
44843696 TTATCCACTCTACTTCAATTTCAAGGGGATGACA
1 -T-TGCTCT-TACTTCAATTTCAAGGGGAAGACG
44843730 TTGCTCTTACTTCAATTTCA
1 TTGCTCTTACTTCAATTTCA
44843750 GAGATGAAGA
Statistics
Matches: 94, Mismatches: 19, Indels: 25
0.68 0.14 0.18
Matches are distributed among these distances:
31 25 0.27
32 10 0.11
33 4 0.04
34 6 0.06
35 11 0.12
36 17 0.18
37 2 0.02
38 6 0.06
39 13 0.14
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (31 bp):
TTGCTCTTACTTCAATTTCAAGGGGAAGACG
Found at i:44843724 original size:70 final size:68
Alignment explanation
Indices: 44843593--44843865 Score: 356
Period size: 72 Copynumber: 3.9 Consensus size: 68
44843583 GGAAATGATC
*
44843593 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTG---TCCATTCTATTCTTCAATTTCAAGGGGA
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTA--CTTCAATTTCAAGGGGA
* *
44843655 CGACG
64 TGACA
*
44843660 TTGCTCTTACTTCAATTTCAGAGAGATAAAGACATGTTATCCACTCTACTTCAATTTCAAGGGGA
1 TTGCTCTTACTTCAATTTC--AGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGA
44843725 TGACA
64 TGACA
* *
44843730 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTT-AATTTCAATTCAAGC
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAA--T---TTCAAGG
*
44843794 GGATGGCA
61 GGATGACA
* *
44843802 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGAT
44843866 TGGAAATGAT
Statistics
Matches: 187, Mismatches: 8, Indels: 21
0.87 0.04 0.10
Matches are distributed among these distances:
67 21 0.11
68 39 0.21
69 15 0.08
70 39 0.21
71 1 0.01
72 70 0.37
73 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34
Consensus pattern (68 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
ACA
Found at i:44855755 original size:58 final size:57
Alignment explanation
Indices: 44855564--44855755 Score: 154
Period size: 59 Copynumber: 3.3 Consensus size: 57
44855554 GTTTTTAGGG
* *
44855564 GTAAAATGGTAATTTTT-GTGAAATCGGGGCTAAAAATGGAATTTGGAAAATTTGGGA
1 GTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGG-ATTTGGAAAGTTTGGGA
* * * ** * ** * * **
44855621 ATAAAATGGTAAATCTTGGCAAAAACAAGGTCAAAAATGAAATTTTGGAAAG-TTCAGA
1 GTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATG-GA-TTTGGAAAGTTTGGGA
* * * *
44855679 GGCAAAACGGTAAGTTTTGGTGAAATCGGGGTTAAAAATGGATTTAGGGAAGTTTGGGA
1 -GTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGATTT-GGAAAGTTTGGGA
*
44855738 GTACAATGGTAATTTTTG
1 GTAAAATGGTAATTTTTG
44855756 AAAGTTTCGG
Statistics
Matches: 96, Mismatches: 33, Indels: 11
0.69 0.24 0.08
Matches are distributed among these distances:
57 17 0.18
58 39 0.41
59 40 0.42
ACGTcount: A:0.38, C:0.06, G:0.27, T:0.29
Consensus pattern (57 bp):
GTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGATTTGGAAAGTTTGGGA
Found at i:44855894 original size:31 final size:30
Alignment explanation
Indices: 44855746--44856112 Score: 404
Period size: 30 Copynumber: 12.3 Consensus size: 30
44855736 GAGTACAATG
* *
44855746 GTAATTTTTG-AAAGTTTCGGGGTCAAAAT
1 GTAATTTTGGAAAAGTTTTGGGGTCAAAAT
* *
44855775 ATAATTTTAGAAAAGTTTTGGGGTCAAAAT
1 GTAATTTTGGAAAAGTTTTGGGGTCAAAAT
* *
44855805 GTAATTTTGGAAAGGTTTCGGGGTCAAAAT
1 GTAATTTTGGAAAAGTTTTGGGGTCAAAAT
* *
44855835 GTAATTTTGGAAAGGTTTCGGGGTCAAAAT
1 GTAATTTTGGAAAAGTTTTGGGGTCAAAAT
* *
44855865 GTAATTTTGGAAAAAATTTTGAGGTCAAAAT
1 GTAATTTTGG-AAAAGTTTTGGGGTCAAAAT
* * * * *
44855896 GTAAATTTGAAAAAATTTTAGGGTTAAAAT
1 GTAATTTTGGAAAAGTTTTGGGGTCAAAAT
*
44855926 GTAATTTTGGAAAAGTTTT-GGGTTAAAAT
1 GTAATTTTGGAAAAGTTTTGGGGTCAAAAT
* * *
44855955 GTAATTTT-TAGAAA-TTTTAGGGTTAAAAT
1 GTAATTTTGGA-AAAGTTTTGGGGTCAAAAT
* *
44855984 ATAATTTTGGAAAAGTTTTGGGGTTAAAAT
1 GTAATTTTGGAAAAGTTTTGGGGTCAAAAT
44856014 GTAATTTTGGAAAAAGTTTTGGGGTCAAAAT
1 GTAATTTTGG-AAAAGTTTTGGGGTCAAAAT
** *
44856045 GTAATTTTGGAAAA-TTTAAAGGGTTAAAAT
1 GTAATTTTGGAAAAGTTT-TGGGGTCAAAAT
* *
44856075 GTAATTTT-TAGAAAGTTTTGGGGTTAAAAT
1 GTAATTTTGGA-AAAGTTTTGGGGTCAAAAT
*
44856105 ATAATTTT
1 GTAATTTT
44856113 TAGAAAGGTT
Statistics
Matches: 296, Mismatches: 32, Indels: 19
0.85 0.09 0.05
Matches are distributed among these distances:
28 5 0.02
29 53 0.18
30 182 0.61
31 56 0.19
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.38
Consensus pattern (30 bp):
GTAATTTTGGAAAAGTTTTGGGGTCAAAAT
Found at i:44856138 original size:149 final size:150
Alignment explanation
Indices: 44855765--44856144 Score: 502
Period size: 149 Copynumber: 2.5 Consensus size: 150
44855755 GAAAGTTTCG
* * * *
44855765 GGGTCAAAATATAATTTTAGAAAAGTTTTGGGGTCAAAATGTAA-TTTTGGAAAGGTTTCGGGGT
1 GGGTTAAAATGTAATTTTAGAAAAGTTTTGGGGTTAAAATGTAATTTTTAGAAAGGTTT--GGGT
* *
44855829 CAAAATGTAATTTTGGAAAGGTTTCGGGGTCAAAATGTAATTTTGGAAAAAATTTTGAGGTCAAA
64 TAAAATGTAATTTTGGAAAAGTTTCGGGGTCAAAATGTAATTTTGGAAAAAATTTTGAGGTCAAA
*
44855894 ATGTAAATTTGAAAAAATTTTA
129 ATGTAAATTTGAAAAAATTTAA
* *
44855916 GGGTTAAAATGTAATTTTGGAAAAGTTTT-GGGTTAAAATGTAATTTTTAGAAA-TTTTAGGGTT
1 GGGTTAAAATGTAATTTTAGAAAAGTTTTGGGGTTAAAATGTAATTTTTAGAAAGGTTT-GGGTT
* * * * *
44855979 AAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAAGTTTTGGGGTCAAAA
65 AAAATGTAATTTTGGAAAAGTTTCGGGGTCAAAATGTAATTTTGGAAAAAATTTTGAGGTCAAAA
* *
44856044 TGTAATTTTG-GAAAATTTAAA
130 TGTAAATTTGAAAAAATTT-AA
*
44856065 GGGTTAAAATGTAATTTTTAG-AAAGTTTTGGGGTTAAAATATAATTTTTAGAAAGGTTT-GGTT
1 GGGTTAAAATGTAA-TTTTAGAAAAGTTTTGGGGTTAAAATGTAATTTTTAGAAAGGTTTGGGTT
*
44856128 GAAATGTAATTTCTGGA
65 AAAATGTAATTT-TGGA
44856145 CAATTTAGGG
Statistics
Matches: 201, Mismatches: 22, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
148 7 0.03
149 109 0.54
150 48 0.24
151 37 0.18
ACGTcount: A:0.37, C:0.02, G:0.23, T:0.38
Consensus pattern (150 bp):
GGGTTAAAATGTAATTTTAGAAAAGTTTTGGGGTTAAAATGTAATTTTTAGAAAGGTTTGGGTTA
AAATGTAATTTTGGAAAAGTTTCGGGGTCAAAATGTAATTTTGGAAAAAATTTTGAGGTCAAAAT
GTAAATTTGAAAAAATTTAA
Found at i:44857992 original size:17 final size:17
Alignment explanation
Indices: 44857972--44858005 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
44857962 TTAAATAAAT
*
44857972 CTTAAAATTAATTCAAA
1 CTTAAAATAAATTCAAA
*
44857989 CTTAATATAAATTCAAA
1 CTTAAAATAAATTCAAA
44858006 AAAATCTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
CTTAAAATAAATTCAAA
Found at i:44859541 original size:17 final size:17
Alignment explanation
Indices: 44859519--44859552 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
44859509 CGTTTTTGGA
*
44859519 CACTACTAAATATATTT
1 CACTACCAAATATATTT
44859536 CACTACCAAATATATTT
1 CACTACCAAATATATTT
44859553 GGTTAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (17 bp):
CACTACCAAATATATTT
Found at i:44862572 original size:15 final size:15
Alignment explanation
Indices: 44862554--44862633 Score: 55
Period size: 15 Copynumber: 5.6 Consensus size: 15
44862544 TAATTCAATT
44862554 TTAATAATAATTATA
1 TTAATAATAATTATA
*
44862569 TTAAAAAT-ATTAT-
1 TTAATAATAATTATA
* *
44862582 TAAATTATATATTAT-
1 TTAATAATA-ATTATA
* *
44862597 TTCAT--TAAATATA
1 TTAATAATAATTATA
44862610 TTTAATAATAATTATA
1 -TTAATAATAATTATA
44862626 TTAA-AATA
1 TTAATAATA
44862634 TGATTAAATT
Statistics
Matches: 50, Mismatches: 9, Indels: 13
0.69 0.12 0.18
Matches are distributed among these distances:
12 4 0.08
13 7 0.14
14 13 0.26
15 19 0.38
16 7 0.14
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATAATAATTATA
Found at i:44862651 original size:56 final size:58
Alignment explanation
Indices: 44862553--44862663 Score: 181
Period size: 57 Copynumber: 1.9 Consensus size: 58
44862543 CTAATTCAAT
*
44862553 TTTAATAATAATTATATTAAAAATATTATTAAATTATATATTA-TTTCATTAAATATA
1 TTTAATAATAATTATATTAAAAATATGATTAAATTATATATTATTTTCATTAAATATA
* *
44862610 TTTAATAATAATTATATT-AAAATATGATTAAATTATTTATTATTTTTATTAAAT
1 TTTAATAATAATTATATTAAAAATATGATTAAATTATATATTATTTTCATTAAAT
44862664 TTAATTGTCT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 22 0.44
57 28 0.56
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (58 bp):
TTTAATAATAATTATATTAAAAATATGATTAAATTATATATTATTTTCATTAAATATA
Found at i:44872914 original size:19 final size:20
Alignment explanation
Indices: 44872874--44872919 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
44872864 ATGCGTGTAA
*
44872874 ATTTTTATTATTTTATGTTG
1 ATTTTTATTATTTTATGATG
44872894 ATTTTTA-TATTATTAT-ATG
1 ATTTTTATTATT-TTATGATG
*
44872913 ATATTTA
1 ATTTTTA
44872920 ATAATATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (20 bp):
ATTTTTATTATTTTATGATG
Found at i:44874119 original size:2 final size:2
Alignment explanation
Indices: 44874112--44874153 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
44874102 TCTCTAGTTG
44874112 AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44874153 A
1 A
44874154 GCTTGTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:44884433 original size:9 final size:9
Alignment explanation
Indices: 44884415--44884488 Score: 58
Period size: 9 Copynumber: 8.2 Consensus size: 9
44884405 GAAAATGGGA
*
44884415 CCAGGTGGG
1 CCAGGAGGG
44884424 CCAGGAGGG
1 CCAGGAGGG
** *
44884433 CCACCAGGA
1 CCAGGAGGG
44884442 CCAGGAGGG
1 CCAGGAGGG
** *
44884451 CCACCAGGA
1 CCAGGAGGG
44884460 CCAGGAGGG
1 CCAGGAGGG
** *
44884469 CCACCAGGA
1 CCAGGAGGG
44884478 CCAGGAGGG
1 CCAGGAGGG
44884487 CC
1 CC
44884489 TCCAGGATGG
Statistics
Matches: 46, Mismatches: 19, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.24, C:0.32, G:0.42, T:0.01
Consensus pattern (9 bp):
CCAGGAGGG
Found at i:44884447 original size:18 final size:18
Alignment explanation
Indices: 44884424--44884495 Score: 135
Period size: 18 Copynumber: 4.0 Consensus size: 18
44884414 ACCAGGTGGG
44884424 CCAGGAGGGCCACCAGGA
1 CCAGGAGGGCCACCAGGA
44884442 CCAGGAGGGCCACCAGGA
1 CCAGGAGGGCCACCAGGA
44884460 CCAGGAGGGCCACCAGGA
1 CCAGGAGGGCCACCAGGA
*
44884478 CCAGGAGGGCCTCCAGGA
1 CCAGGAGGGCCACCAGGA
44884496 TGGGGCGGTC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 53 1.00
ACGTcount: A:0.26, C:0.33, G:0.39, T:0.01
Consensus pattern (18 bp):
CCAGGAGGGCCACCAGGA
Found at i:44884523 original size:39 final size:39
Alignment explanation
Indices: 44884469--44884560 Score: 121
Period size: 39 Copynumber: 2.4 Consensus size: 39
44884459 ACCAGGAGGG
* *
44884469 CCACCAGGACCAGGAGGGCCTCCAGGATGGGGCGGTCCT
1 CCACCCGGACCAGGAGGGCCACCAGGATGGGGCGGTCCT
* * *
44884508 CCACCCGGACCAGGAGGGCCACCGGGATGGGGTGTTCCT
1 CCACCCGGACCAGGAGGGCCACCAGGATGGGGCGGTCCT
**
44884547 CCAGTCGGACCAGG
1 CCACCCGGACCAGG
44884561 GTTTTTTGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.17, C:0.34, G:0.38, T:0.11
Consensus pattern (39 bp):
CCACCCGGACCAGGAGGGCCACCAGGATGGGGCGGTCCT
Found at i:44887875 original size:16 final size:16
Alignment explanation
Indices: 44887854--44887894 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
44887844 TTGTGGGTTA
* *
44887854 TTTCTTCTCCTTTTTT
1 TTTCTTCTCCTCTTTC
44887870 TTTCTTCTCCTCTTTC
1 TTTCTTCTCCTCTTTC
*
44887886 TCTCTTCTC
1 TTTCTTCTC
44887895 TTCTAACCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTCTTCTCCTCTTTC
Found at i:44893458 original size:58 final size:58
Alignment explanation
Indices: 44893366--44893475 Score: 138
Period size: 58 Copynumber: 1.9 Consensus size: 58
44893356 TTAATATAAT
* *
44893366 ATTTGGTACTTGAACTTGATACTTTTTTTAAATTT-GATACTTAAATTTTTTTGACTCA
1 ATTTGGTACTTGAACTTGACACTTTTTTTAAATTTAG-TACCTAAATTTTTTTGACTCA
44893424 ATTTGGTA-TCTGAACTTGACA-TTTTTTCCT-AATTTAGTACCTAAATTTTTTT
1 ATTTGGTACT-TGAACTTGACACTTTTTT--TAAATTTAGTACCTAAATTTTTTT
44893476 ATTATATAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
57 7 0.15
58 37 0.80
59 2 0.04
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.52
Consensus pattern (58 bp):
ATTTGGTACTTGAACTTGACACTTTTTTTAAATTTAGTACCTAAATTTTTTTGACTCA
Found at i:44893734 original size:31 final size:31
Alignment explanation
Indices: 44893697--44893835 Score: 108
Period size: 31 Copynumber: 4.5 Consensus size: 31
44893687 TGACCCCAAA
* *
44893697 AAGTTTAAGTACCAACTTA-GAAAAAAGTGTT
1 AAGTTTAAGTACCAAATTAGGAAAAAA-TGTC
* *
44893728 AAGTTTAGGTATCAAATTAGGAAAAAATGTC
1 AAGTTTAAGTACCAAATTAGGAAAAAATGTC
* *
44893759 AAGTTTGAGTACCAAATT-GGACCAAAAT-T-
1 AAGTTTAAGTACCAAATTAGGA-AAAAATGTC
* * * *
44893788 -AGTTTAGGTATCAAATTAGAAAAAAAATGAC
1 AAGTTTAAGTACCAAATTAG-GAAAAAATGTC
* *
44893819 AAGTTCAAGTACTAAAT
1 AAGTTTAAGTACCAAAT
44893836 ATTATATTAA
Statistics
Matches: 83, Mismatches: 18, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
28 14 0.17
29 6 0.07
30 5 0.06
31 39 0.47
32 19 0.23
ACGTcount: A:0.46, C:0.09, G:0.17, T:0.28
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAGGAAAAAATGTC
Found at i:44895213 original size:30 final size:30
Alignment explanation
Indices: 44895099--44895257 Score: 125
Period size: 29 Copynumber: 5.4 Consensus size: 30
44895089 TCTCGAGGCC
* * *
44895099 AAAATGGTAA-TTTTGGGAGTTTCGGGGTCA
1 AAAAT-GTAATTTTTGGAAGTTTTGGGGGCA
* ** ** *
44895129 AAAATGAAATTTTTTAAAG-TTCAGGGTCA
1 AAAATGTAATTTTTGGAAGTTTTGGGGGCA
44895158 AAAATAG-AATTTTTGGAAG-TTTGGGGGCA
1 AAAAT-GTAATTTTTGGAAGTTTTGGGGGCA
*
44895187 AAAATGTAATTTTTGGAAGTTTT-GGGGTA
1 AAAATGTAATTTTTGGAAGTTTTGGGGGCA
*
44895216 AAAATGTAA-TTTTGGAAAAGTTTTGGGTGC-
1 AAAATGTAATTTTTGG--AAGTTTTGGGGGCA
*
44895246 AAAATATAATTT
1 AAAATGTAATTT
44895258 CGAAGAAGTT
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
28 7 0.07
29 65 0.61
30 30 0.28
31 5 0.05
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (30 bp):
AAAATGTAATTTTTGGAAGTTTTGGGGGCA
Found at i:44895219 original size:58 final size:58
Alignment explanation
Indices: 44895099--44895232 Score: 148
Period size: 58 Copynumber: 2.3 Consensus size: 58
44895089 TCTCGAGGCC
* * *
44895099 AAAATGGTAATTTTGGGAGTTTCGGGGTCAAAAATGAAATTTTTTAAAGTTCAGGGTCA
1 AAAAT-GTAATTTTGGAAGTTTCGGGGGCAAAAATGAAATTTTTGAAAGTTCAGGGTCA
* * **
44895158 AAAATAG-AATTTTTGGAAGTTT-GGGGGCAAAAATGTAATTTTTGGAAGTTTTGGGGT-A
1 AAAAT-GTAA-TTTTGGAAGTTTCGGGGGCAAAAATGAAATTTTTGAAAG-TTCAGGGTCA
44895216 AAAATGTAATTTTGGAA
1 AAAATGTAATTTTGGAA
44895233 AAGTTTTGGG
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
57 9 0.14
58 32 0.50
59 23 0.36
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (58 bp):
AAAATGTAATTTTGGAAGTTTCGGGGGCAAAAATGAAATTTTTGAAAGTTCAGGGTCA
Found at i:44896407 original size:3 final size:3
Alignment explanation
Indices: 44896401--44896425 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
44896391 AATAATAATA
44896401 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
44896426 GTAAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:44897152 original size:17 final size:16
Alignment explanation
Indices: 44897130--44897203 Score: 71
Period size: 17 Copynumber: 4.6 Consensus size: 16
44897120 AATTTTAATA
* *
44897130 TTAAATTTAATATTATT
1 TTAAATTTAAT-TAAAT
*
44897147 TTAAATTTGATTAAAT
1 TTAAATTTAATTAAAT
*
44897163 TTAAATTTAAAGTAAAT
1 TTAAATTT-AATTAAAT
*
44897180 TTAAA--TAAGTAAAT
1 TTAAATTTAATTAAAT
44897194 TTAAATTTAA
1 TTAAATTTAA
44897204 AATCAATTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
14 13 0.27
15 1 0.02
16 14 0.29
17 21 0.43
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (16 bp):
TTAAATTTAATTAAAT
Found at i:44897168 original size:6 final size:6
Alignment explanation
Indices: 44897120--44897204 Score: 54
Period size: 6 Copynumber: 14.3 Consensus size: 6
44897110 TTGGATTTTT
* * *
44897120 AATTTT AATATTA AATTT- AATATT- ATTTTA AATTT- GA-TTA AATTTA
1 AATTTA AAT-TTA AATTTA AAT-TTA AATTTA AATTTA AATTTA AATTTA
* *
44897166 AATTTA AA-GTA AATTTA AATAAGTA AATTTA AATTTA AA
1 AATTTA AATTTA AATTTA AAT--TTA AATTTA AATTTA AA
44897205 ATCAATTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
4 2 0.03
5 11 0.18
6 39 0.63
7 5 0.08
8 5 0.08
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (6 bp):
AATTTA
Found at i:44897191 original size:14 final size:15
Alignment explanation
Indices: 44897158--44897199 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 15
44897148 TAAATTTGAT
44897158 TAAATTTAAATTTAAAG
1 TAAATTTAAA--TAAAG
44897175 TAAATTTAAAT-AAG
1 TAAATTTAAATAAAG
44897189 TAAATTTAAAT
1 TAAATTTAAAT
44897200 TTAAAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 14 0.56
15 1 0.04
17 10 0.40
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (15 bp):
TAAATTTAAATAAAG
Found at i:44897213 original size:11 final size:11
Alignment explanation
Indices: 44897197--44897228 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
44897187 AGTAAATTTA
44897197 AATTTAAAATC
1 AATTTAAAATC
44897208 AATTTAAAATC
1 AATTTAAAATC
44897219 AATTTAAAAT
1 AATTTAAAAT
44897229 TTTAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (11 bp):
AATTTAAAATC
Found at i:44898434 original size:12 final size:12
Alignment explanation
Indices: 44898400--44898434 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
44898390 CATAAGCTGC
44898400 CTCCTCCTCCTT
1 CTCCTCCTCCTT
**
44898412 CTCCTTATCCTT
1 CTCCTCCTCCTT
44898424 CTCCTCCTCCT
1 CTCCTCCTCCT
44898435 CCTTATTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.54, G:0.00, T:0.43
Consensus pattern (12 bp):
CTCCTCCTCCTT
Found at i:44901457 original size:22 final size:21
Alignment explanation
Indices: 44901432--44901473 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
44901422 ACCCCTCCCA
44901432 AAAAATAAACAAAAAAAAATTT
1 AAAAATAAA-AAAAAAAAATTT
* *
44901454 AAAAATAGAAAATAAAAATT
1 AAAAATAAAAAAAAAAAATT
44901474 CTTGACATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAAATAAAAAAAAAAAATTT
Found at i:44917917 original size:2 final size:2
Alignment explanation
Indices: 44917910--44917949 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
44917900 TTTTCTTTTA
44917910 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44917950 TAGGAGATAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44919269 original size:30 final size:29
Alignment explanation
Indices: 44919235--44919291 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
44919225 TACGATAATA
*
44919235 AAAATATAATAATTTTTAAATAATTAAATT
1 AAAAT-TAATAATTTTTAAAAAATTAAATT
* *
44919265 AAAATTTATCATTTTTAAAAAATTAAA
1 AAAATTAATAATTTTTAAAAAATTAAA
44919292 ATACAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (29 bp):
AAAATTAATAATTTTTAAAAAATTAAATT
Found at i:44920022 original size:22 final size:22
Alignment explanation
Indices: 44919980--44920022 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
44919970 AGATTATTAA
*
44919980 AATTATAAAATTATATTTTTAT
1 AATTATAAAATTATATATTTAT
44920002 AATTATAAAA-TATATAATTTA
1 AATTATAAAATTATAT-ATTTA
44920023 ATTCTACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATAAAATTATATATTTAT
Found at i:44920775 original size:31 final size:32
Alignment explanation
Indices: 44920708--44920776 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
44920698 TTGGTTCAAT
*
44920708 TTGGTACCTAAACTTAACATTTTTTTCCTAAT
1 TTGGTACCTAAACTTAACATTTTTTTCCTAAG
* *
44920740 TTGGTACCTAAACTTGACA-TTTTTTCTTAAG
1 TTGGTACCTAAACTTAACATTTTTTTCCTAAG
44920771 TTGGTA
1 TTGGTA
44920777 TTTAATCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 16 0.47
32 18 0.53
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (32 bp):
TTGGTACCTAAACTTAACATTTTTTTCCTAAG
Found at i:44921211 original size:53 final size:53
Alignment explanation
Indices: 44921151--44921252 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 53
44921141 AATATTTAAT
** *
44921151 AAATTTAAATATTAAATTAAAT-AAAAAAACTTAAATTTTAAATTAAAAATATC
1 AAATTTAAATACCAAATTAAATCAAAAAAA-TTAAATATTAAATTAAAAATATC
* *
44921204 AAATTTAAATACCAAATTGAATCATAAAAATTAAATATTAAATTAAAAA
1 AAATTTAAATACCAAATTAAATCAAAAAAATTAAATATTAAATTAAAAA
44921253 AATAAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 37 0.86
54 6 0.14
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (53 bp):
AAATTTAAATACCAAATTAAATCAAAAAAATTAAATATTAAATTAAAAATATC
Found at i:44921259 original size:26 final size:26
Alignment explanation
Indices: 44921148--44921264 Score: 94
Period size: 26 Copynumber: 4.5 Consensus size: 26
44921138 TATAATATTT
*
44921148 AATAAATTTAAATATTAAATTAAATAA
1 AATAAAATTAAATATTAAATTAAA-AA
* *
44921175 AA-AAACTTAAATTTTAAATTAAAAA
1 AATAAAATTAAATATTAAATTAAAAA
* * ** * *
44921200 TATCAAATTTAAATACCAAATT-GAAT
1 AAT-AAAATTAAATATTAAATTAAAAA
*
44921226 CATAAAAATTAAATATTAAATTAAAAA
1 AAT-AAAATTAAATATTAAATTAAAAA
*
44921253 AATAAAAATAAA
1 AATAAAATTAAA
44921265 AAATCAAATG
Statistics
Matches: 69, Mismatches: 18, Indels: 7
0.73 0.19 0.07
Matches are distributed among these distances:
25 3 0.04
26 46 0.67
27 20 0.29
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (26 bp):
AATAAAATTAAATATTAAATTAAAAA
Found at i:44922129 original size:23 final size:24
Alignment explanation
Indices: 44922083--44922152 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
44922073 ACACACTTAA
* * * *
44922083 TAAAAATTAATCTAACTCTAAAAT
1 TAAAAATTAATCAAATTTTTAAAT
44922107 T-AAAATTAATCAAATTTTTAAAT
1 TAAAAATTAATCAAATTTTTAAAT
*
44922130 TAAAAAAATTAATCAACTTTTTA
1 T--AAAAATTAATCAAATTTTTA
44922153 CTAATGTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
23 19 0.50
24 1 0.03
26 18 0.47
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.39
Consensus pattern (24 bp):
TAAAAATTAATCAAATTTTTAAAT
Found at i:44928881 original size:14 final size:14
Alignment explanation
Indices: 44928862--44928913 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
44928852 AATTATTTTC
44928862 TAAACTTTAAATTT
1 TAAACTTTAAATTT
**
44928876 TAAACTCCAAATTT
1 TAAACTTTAAATTT
*
44928890 CAAACTTTAAA-TT
1 TAAACTTTAAATTT
*
44928903 TGAACTTTAAA
1 TAAACTTTAAA
44928914 CCTAAATTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
13 11 0.35
14 20 0.65
ACGTcount: A:0.44, C:0.13, G:0.02, T:0.40
Consensus pattern (14 bp):
TAAACTTTAAATTT
Found at i:44929010 original size:28 final size:28
Alignment explanation
Indices: 44928952--44929010 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
44928942 ACATGTGAGG
* * ** *
44928952 TTAAAATTTAAAATTTAAGATTTTAGGT
1 TTAAAATTTAAAATTCAAAATTCGAGAT
*
44928980 TTAAAATTTAAAGTTCAAAATTCGAGAT
1 TTAAAATTTAAAATTCAAAATTCGAGAT
44929008 TTA
1 TTA
44929011 GAGCTCAAGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.42
Consensus pattern (28 bp):
TTAAAATTTAAAATTCAAAATTCGAGAT
Found at i:44930020 original size:21 final size:21
Alignment explanation
Indices: 44929995--44930034 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
44929985 ACTTTTTCTA
**
44929995 AAATTAAAAGTCAAAACTATT
1 AAATTAAAAGGAAAAACTATT
44930016 AAATTAAAAGGAAAAACTA
1 AAATTAAAAGGAAAAACTA
44930035 CGTCGTTCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.23
Consensus pattern (21 bp):
AAATTAAAAGGAAAAACTATT
Found at i:44959502 original size:20 final size:20
Alignment explanation
Indices: 44959477--44959519 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
44959467 GTCAATTTAA
44959477 AATATTATTACAATATGACT
1 AATATTATTACAATATGACT
44959497 AATATTATTACAATATGACT
1 AATATTATTACAATATGACT
44959517 AAT
1 AAT
44959520 TTAAGTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.40
Consensus pattern (20 bp):
AATATTATTACAATATGACT
Found at i:44959768 original size:20 final size:20
Alignment explanation
Indices: 44959731--44959769 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
44959721 TTCATGAAAT
* * *
44959731 TTTGTAATTTTTATAAATAA
1 TTTGAAATTTTAAAAAATAA
44959751 TTTGAAATTTTAAAAAATA
1 TTTGAAATTTTAAAAAATA
44959770 TTTTAATTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TTTGAAATTTTAAAAAATAA
Found at i:44972575 original size:18 final size:18
Alignment explanation
Indices: 44972554--44972588 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
44972544 CATTTTTTGA
44972554 ATTTTTATGAT-TTTTAAT
1 ATTTTTAT-ATATTTTAAT
44972572 ATTTTTATATATTTTAA
1 ATTTTTATATATTTTAA
44972589 ATTATTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (18 bp):
ATTTTTATATATTTTAAT
Found at i:44974966 original size:163 final size:162
Alignment explanation
Indices: 44974696--44974999 Score: 572
Period size: 163 Copynumber: 1.9 Consensus size: 162
44974686 AGTGTCAAAA
44974696 TAATGGATTATGAAAATGAATTAACAGATAATGTGGTGTGGCAGTAATTCGCATAGATAGCACAA
1 TAATGGATTATGAAAATGAATTAACAGATAATGTGGTGTGGCAGTAATTCGCATAGATAGCACAA
*
44974761 ACACATGATGGAATACAATGATGTTTACAAACCTCCCCTGTTACCCTAAAATTTAGATATGTACT
66 ACACATGATGGAATACAATGATGTTTACAAACCTCCCCTGTTACCCCAAAATTTA-ATATGTACT
44974826 TATTCTCATGATGTTGGTGGGTACTTATTGATT
130 TATTCTCATGATGTTGGTGGGTACTTATTGATT
*
44974859 TAATGGATTATGAAAATGAATTAACAGATAATGTGGTGTGGCAGTAATTCGCATAGATAGTACAA
1 TAATGGATTATGAAAATGAATTAACAGATAATGTGGTGTGGCAGTAATTCGCATAGATAGCACAA
*
44974924 ACACATGATGGAATACAATGATGTTTACAAACCTCCCCTGTTACCCCAAATTTTAATATGTACTT
66 ACACATGATGGAATACAATGATGTTTACAAACCTCCCCTGTTACCCCAAAATTTAATATGTACTT
44974989 ATTCTCATGAT
131 ATTCTCATGAT
44975000 TGACACTATA
Statistics
Matches: 138, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
162 21 0.15
163 117 0.85
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33
Consensus pattern (162 bp):
TAATGGATTATGAAAATGAATTAACAGATAATGTGGTGTGGCAGTAATTCGCATAGATAGCACAA
ACACATGATGGAATACAATGATGTTTACAAACCTCCCCTGTTACCCCAAAATTTAATATGTACTT
ATTCTCATGATGTTGGTGGGTACTTATTGATT
Found at i:44984335 original size:20 final size:22
Alignment explanation
Indices: 44984296--44984335 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
44984286 GTTTTTTTTA
*
44984296 TGTTAAATTTGATATTCAAACT
1 TGTTAAATTTGATATACAAACT
44984318 TGTTAAA-TT-ATATACAAA
1 TGTTAAATTTGATATACAAA
44984336 TTATCTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 2 0.12
22 7 0.41
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.42
Consensus pattern (22 bp):
TGTTAAATTTGATATACAAACT
Found at i:44985829 original size:60 final size:61
Alignment explanation
Indices: 44985760--44985874 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 61
44985750 AAGACTCAAT
**
44985760 TGACAAATTTTGTAAATGTTGAG-GCCAAATTTGTTGAATTTTTTAGAATTAGAACTAAAA
1 TGACAAATTTTGTAAACATTGAGAGCCAAATTTGTTGAATTTTTTAGAATTAGAACTAAAA
* * * * *
44985820 TGACAAATTTTGTAAACATTGAGATCTAAATTTGTTTAATTTTTTATATTTAGAA
1 TGACAAATTTTGTAAACATTGAGAGCCAAATTTGTTGAATTTTTTAGAATTAGAA
44985875 TCAAATTAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
60 21 0.45
61 26 0.55
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (61 bp):
TGACAAATTTTGTAAACATTGAGAGCCAAATTTGTTGAATTTTTTAGAATTAGAACTAAAA
Found at i:44992148 original size:2 final size:2
Alignment explanation
Indices: 44992141--44992175 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
44992131 GGGTTTCTTT
44992141 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
44992176 TGGACTTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:44993336 original size:20 final size:21
Alignment explanation
Indices: 44993308--44993358 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
44993298 GGATTATGTA
*
44993308 ATTTTGATTTAT-AACTTTAT
1 ATTTGGATTTATAAACTTTAT
* * *
44993328 GTTTGGATTTCTAAATTTTAT
1 ATTTGGATTTATAAACTTTAT
44993349 ATTTGGATTT
1 ATTTGGATTT
44993359 TGCTATTATC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.25, C:0.04, G:0.12, T:0.59
Consensus pattern (21 bp):
ATTTGGATTTATAAACTTTAT
Found at i:44995235 original size:20 final size:20
Alignment explanation
Indices: 44995212--44995253 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
44995202 AGAAGCATAC
* *
44995212 TTGTATTTGCAGAATTGAAG
1 TTGTATTGGCAGAAGTGAAG
*
44995232 TTGTATTGGTAGAAGTGAAG
1 TTGTATTGGCAGAAGTGAAG
44995252 TT
1 TT
44995254 CTACCGGTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.02, G:0.29, T:0.40
Consensus pattern (20 bp):
TTGTATTGGCAGAAGTGAAG
Found at i:45005287 original size:22 final size:22
Alignment explanation
Indices: 45005232--45005287 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
45005222 TGCCTAAATT
*
45005232 TTTTGTTGTTATTTTGCTGTCA
1 TTTTGTTGTTATATTGCTGTCA
** *
45005254 TTTTGTAATTATATTGCTGTTA
1 TTTTGTTGTTATATTGCTGTCA
45005276 TTTTGTTGTTAT
1 TTTTGTTGTTAT
45005288 TATTTTTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.14, C:0.05, G:0.16, T:0.64
Consensus pattern (22 bp):
TTTTGTTGTTATATTGCTGTCA
Found at i:45005288 original size:11 final size:11
Alignment explanation
Indices: 45005232--45005288 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
45005222 TGCCTAAATT
45005232 TTTTGTTGTTA
1 TTTTGTTGTTA
* *
45005243 TTTTGCTGTCA
1 TTTTGTTGTTA
**
45005254 TTTTGTAATTA
1 TTTTGTTGTTA
* *
45005265 TATTGCTGTTA
1 TTTTGTTGTTA
45005276 TTTTGTTGTTA
1 TTTTGTTGTTA
45005287 TT
1 TT
45005289 ATTTTTTTTA
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.14, C:0.05, G:0.16, T:0.65
Consensus pattern (11 bp):
TTTTGTTGTTA
Found at i:45008346 original size:13 final size:13
Alignment explanation
Indices: 45008323--45008357 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
45008313 TTACGTTTTC
*
45008323 ATAAGTTATAATTA
1 ATAA-TTATAAATA
45008337 ATAATTATAAATA
1 ATAATTATAAATA
45008350 ATAATTAT
1 ATAATTAT
45008358 GGAGGATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (13 bp):
ATAATTATAAATA
Found at i:45009379 original size:31 final size:31
Alignment explanation
Indices: 45009319--45009380 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
45009309 TCTTAATAGC
* **
45009319 CTAATAGCTTAAATAAAAACTTTTGAATAAT
1 CTAATAACTTAAATAAAAACTTTAAAATAAT
45009350 CTAATAACTTAAATAAAAA-TATTAAAATAAT
1 CTAATAACTTAAATAAAAACT-TTAAAATAAT
45009381 TCAGTGATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (31 bp):
CTAATAACTTAAATAAAAACTTTAAAATAAT
Found at i:45016234 original size:55 final size:55
Alignment explanation
Indices: 45016150--45016259 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
45016140 TGACATTGTC
45016150 ACTACACCTATTTAAAAATTGATCAACTTGTTTTTAATATACTCATGTCAAATTT
1 ACTACACCTATTTAAAAATTGATCAACTTGTTTTTAATATACTCATGTCAAATTT
*
45016205 ACTACACCTATTTAAAATTTGATCAACTTGTTTTTAATATACTCATGTCAAATTT
1 ACTACACCTATTTAAAAATTGATCAACTTGTTTTTAATATACTCATGTCAAATTT
45016260 GAATTGACAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.43
Consensus pattern (55 bp):
ACTACACCTATTTAAAAATTGATCAACTTGTTTTTAATATACTCATGTCAAATTT
Found at i:45019696 original size:18 final size:17
Alignment explanation
Indices: 45019667--45019712 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
45019657 ATTTAAAATA
45019667 TTTATGTT-ATAAATTT
1 TTTATGTTAATAAATTT
45019683 TATTATGTTAATAAATTT
1 T-TTATGTTAATAAATTT
45019701 TTTCATGTTAAT
1 TTT-ATGTTAAT
45019713 TTTAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.04
17 9 0.33
18 17 0.63
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (17 bp):
TTTATGTTAATAAATTT
Found at i:45020078 original size:18 final size:18
Alignment explanation
Indices: 45020055--45020097 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
45020045 GTTTAAGGTA
45020055 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
45020073 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
45020091 TAATTAA
1 TAATTAA
45020098 AAACCTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:45020321 original size:2 final size:2
Alignment explanation
Indices: 45020314--45020346 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
45020304 ATAACTTACC
45020314 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45020347 ACTGTGAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45020664 original size:6 final size:6
Alignment explanation
Indices: 45020653--45020686 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
45020643 ATCAATTACC
45020653 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
45020687 GGACGTGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:45029766 original size:58 final size:58
Alignment explanation
Indices: 45029667--45029782 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
45029657 GGGAGCTATA
* * *
45029667 AGGGCCTTTTGATCGCATGAGAGAGGGGTGCTAGGAGAGTTGTGCTAGAAATGGATTG
1 AGGGACTTTTGATCGCATGAGAGAGGGGTGCTAGGAAAGTTGTGCTAAAAATGGATTG
45029725 AGGGACTTTTGATCGCATGAGAGAGGGGTGCTAGGAAAGTTGTGCTAAAAATGGATTG
1 AGGGACTTTTGATCGCATGAGAGAGGGGTGCTAGGAAAGTTGTGCTAAAAATGGATTG
45029783 TAAGGAAGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.27, C:0.09, G:0.38, T:0.26
Consensus pattern (58 bp):
AGGGACTTTTGATCGCATGAGAGAGGGGTGCTAGGAAAGTTGTGCTAAAAATGGATTG
Found at i:45038202 original size:10 final size:10
Alignment explanation
Indices: 45038189--45038221 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
45038179 AAAAATATTT
45038189 AATAATTAAA
1 AATAATTAAA
45038199 AATAATTAAA
1 AATAATTAAA
45038209 AAT-ATTAAA
1 AATAATTAAA
45038218 AATA
1 AATA
45038222 TATAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AATAATTAAA
Found at i:45038229 original size:9 final size:9
Alignment explanation
Indices: 45038179--45038228 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
45038169 TAAAAATTCA
45038179 AAAAATATT
1 AAAAATATT
* *
45038188 TAATA-ATT
1 AAAAATATT
45038196 AAAAATAATT
1 AAAAAT-ATT
45038206 AAAAATATT
1 AAAAATATT
45038215 AAAAATATAT
1 AAAAATAT-T
45038225 AAAA
1 AAAA
45038229 TTTAATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
8 6 0.18
9 14 0.41
10 14 0.41
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAAATATT
Found at i:45039087 original size:21 final size:21
Alignment explanation
Indices: 45039046--45039087 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45039036 AATTTTGTAT
* **
45039046 TTATTTTACATTTTTTTAATA
1 TTATTTTACATTGTTAAAATA
45039067 TTATTTTACATTGTTAAAATA
1 TTATTTTACATTGTTAAAATA
45039088 AAACCCACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (21 bp):
TTATTTTACATTGTTAAAATA
Found at i:45045629 original size:16 final size:17
Alignment explanation
Indices: 45045604--45045636 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
45045594 ATGTATTTAT
45045604 ATAAAAAAAAT-TAAAA
1 ATAAAAAAAATGTAAAA
*
45045620 ATAAATAAAATGTAAAA
1 ATAAAAAAAATGTAAAA
45045637 GAGAAAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
ATAAAAAAAATGTAAAA
Found at i:45054268 original size:19 final size:19
Alignment explanation
Indices: 45054246--45054290 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
45054236 TTTTATTAGG
*
45054246 ATTTAATATTTAAAATATT
1 ATTTAATATTTAAAATAGT
* *
45054265 ATTTATTATTTAAATTAGT
1 ATTTAATATTTAAAATAGT
45054284 ATTTAAT
1 ATTTAAT
45054291 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTTAATATTTAAAATAGT
Done.