Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 157 of 182
Found at i:48219392 original size:15 final size:14
Alignment explanation
Indices: 48219372--48219412 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
48219362 ATTTATATTC
48219372 ATAAAATAATAAATA
1 ATAAAATAATAAA-A
48219387 ATAAAATAAT-AAA
1 ATAAAATAATAAAA
48219400 ATAAAATTAATAA
1 ATAAAA-TAATAA
48219413 TATTTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.29
14 6 0.25
15 11 0.46
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
ATAAAATAATAAAA
Found at i:48219393 original size:8 final size:8
Alignment explanation
Indices: 48219372--48219403 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
48219362 ATTTATATTC
48219372 ATAAAATA
1 ATAAAATA
48219380 AT-AAATA
1 ATAAAATA
48219387 ATAAAATA
1 ATAAAATA
48219395 ATAAAATA
1 ATAAAATA
48219403 A
1 A
48219404 AATTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
ATAAAATA
Found at i:48219457 original size:63 final size:62
Alignment explanation
Indices: 48219317--48219475 Score: 216
Period size: 63 Copynumber: 2.5 Consensus size: 62
48219307 ATTTATTTGG
* *
48219317 AATAATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATATTCATAAAAT
1 AATAATAAATAAATAATAAAATAAAATTAATAATATTTTACATTTATTTATATTCATAAAAT
* *
48219379 AATAA-ATAATAAAATAATAAAATAAAATTAATAATATTTTATATTTATTTATGTTCATAAAAAT
1 AATAATA-AAT-AAATAATAAAATAAAATTAATAATATTTTACATTTATTTATATTCAT-AAAAT
*
48219443 AATAATAAATAAATAA-ATAATAATAA-TAATAAT
1 AATAATAAATAAATAATAAAATAA-AATTAATAAT
48219476 GGAATTGGGT
Statistics
Matches: 87, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
61 1 0.01
62 21 0.24
63 51 0.59
64 13 0.15
65 1 0.01
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (62 bp):
AATAATAAATAAATAATAAAATAAAATTAATAATATTTTACATTTATTTATATTCATAAAAT
Found at i:48221044 original size:80 final size:80
Alignment explanation
Indices: 48219994--48221043 Score: 1554
Period size: 80 Copynumber: 13.2 Consensus size: 80
48219984 ATAACTTTAG
* * * * *
48219994 GGGTAAAAGATTAGGTTGT-TTCAATCTGCCTCATGGTCGGGGTAAGAGATCTGATGGTCTTCAA
1 GGGTAAAAGATTAGATT-TCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAA
48220058 TC-TGCCCTCTGGTTA
65 TCTTGCCCTCTGGTTA
* *
48220073 GGGTAAAAGATTAGATTTCTTCAATCTACCCCATGATCAGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
* *
48220138 C-TGCACTTTGGTTA
66 CTTGCCCTCTGGTTA
* *
48220152 GGGTAAAAGATTAGATTTCTTCAATCTACCCTATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48220217 CTTGCCCACTGGTTA
66 CTTGCCCTCTGGTTA
* *
48220232 GGGTAAAATATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTTAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
48220297 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
* * *
48220312 AGGTAAAAGATTAGATTTCTACAATTTGCCCCATGAT-GAGGGTAAAAGATCGGATGGTCTTCAA
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCG-GGGTAAAAGATCGGATGGTCTTCAA
*
48220376 TCTTGCCTTCTGGTTA
65 TCTTGCCCTCTGGTTA
* * * * * *
48220392 AGGTAAAAGATTGGATTTCTTTAATCTACCCCATGATCGGAGTAAAAGATCGGATGGTCTTTAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
* * *
48220457 CTTACCCTCTAGTTG
66 CTTGCCCTCTGGTTA
* * * *
48220472 GGGTAAAAGATTAGATTTCTTCAATTTGTCCCATTATAGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48220537 CTTGCCCTCTAGTTA
66 CTTGCCCTCTGGTTA
* *
48220552 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGATCTTTAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48220617 CTTGCCCTCTAGTTA
66 CTTGCCCTCTGGTTA
* * *
48220632 GGGTAAAAGATTGGATTTATTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTTAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48220697 CTTACCCTCTGGTTA
66 CTTGCCCTCTGGTTA
**
48220712 GGGTAAAAGATTAGATTTCTTCAATCTATCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48220777 CTTGCCCTCTGGATA
66 CTTGCCCTCTGGTTA
* * *
48220792 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCAGGGTAAAAGATCGAATGGTCTTCAAT
1 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48220857 CTTGCCCTCTAGTTA
66 CTTGCCCTCTGGTTA
* *
48220872 GGGTAAAAGATTGGATTTCTTCAATCTGCCACC-TGATCGGGGTAAAAGATCGGATGGTTTTCAA
1 GGGTAAAAGATTAGATTTCTTCAATCTGCC-CCATGATCGGGGTAAAAGATCGGATGGTCTTCAA
48220936 TCTTGCCCTCTGGTTA
65 TCTTGCCCTCTGGTTA
* * *
48220952 GGGTAAAAGATT-GAATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCAGATGTTTTTCAA
1 GGGTAAAAGATTAG-ATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAA
*
48221016 TCTTGCCCTTTGGTTA
65 TCTTGCCCTCTGGTTA
48221032 GGGTAAAAGATT
1 GGGTAAAAGATT
48221044 GGAGGTTGTA
Statistics
Matches: 884, Mismatches: 80, Indels: 13
0.90 0.08 0.01
Matches are distributed among these distances:
78 1 0.00
79 136 0.15
80 744 0.84
81 3 0.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (80 bp):
GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
CTTGCCCTCTGGTTA
Found at i:48221185 original size:50 final size:50
Alignment explanation
Indices: 48221112--48221265 Score: 193
Period size: 50 Copynumber: 3.1 Consensus size: 50
48221102 TCAATCTTCT
* * * *
48221112 CCTCTACAACTTTAAGTGAATGAGATTTGCCATTACAGCTTC-ATTCTGCC
1 CCTCTACAGCTTTAGGTGTATGAGATTTGCCATTACAGCTTCAATT-TGCA
* * *
48221162 CCTTTACAGCTTTAGGTGTATGAGATTTGCCATTACGGTTTCAATTTGCA
1 CCTCTACAGCTTTAGGTGTATGAGATTTGCCATTACAGCTTCAATTTGCA
* * * *
48221212 CCTCTACAGCTTTAGGTGTATGAGATTTACCGTTGCAGTTTCAATTTGCA
1 CCTCTACAGCTTTAGGTGTATGAGATTTGCCATTACAGCTTCAATTTGCA
48221262 CCTC
1 CCTC
48221266 CACCTCTTTA
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
50 88 0.97
51 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (50 bp):
CCTCTACAGCTTTAGGTGTATGAGATTTGCCATTACAGCTTCAATTTGCA
Found at i:48222209 original size:6 final size:6
Alignment explanation
Indices: 48222200--48222233 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
48222190 TCGACCTCCC
48222200 CTTTTT CTTTTT CTTCTCTT CTTTTT CTTTTT CT
1 CTTTTT CTTTTT CTT-T-TT CTTTTT CTTTTT CT
48222234 CTTGTTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 19 0.73
7 2 0.08
8 5 0.19
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (6 bp):
CTTTTT
Found at i:48222236 original size:14 final size:13
Alignment explanation
Indices: 48222201--48222255 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 13
48222191 CGACCTCCCC
48222201 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
*
48222214 TCTCTTCTTTTTCT
1 T-TTTTCTTTTTCT
48222228 TTTTCTCTTGTTCTCT
1 TTTT-TCTT-TT-TCT
48222244 TTTTTCCTTTTT
1 TTTTT-CTTTTT
48222256 TTAATTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
13 3 0.09
14 17 0.49
15 5 0.14
16 10 0.29
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:48227396 original size:67 final size:69
Alignment explanation
Indices: 48227284--48227436 Score: 215
Period size: 71 Copynumber: 2.2 Consensus size: 69
48227274 TATTTAGAAT
* *
48227284 AATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATATTCAT-AAAATA
1 AATAAATAAATAATAAAACAAAATTAACAATATTTTA-A-TTATTTATTTATATTCATAAAAATA
48227348 ATAAATA
64 AT-AATA
* *
48227355 AATAAATAAATAATAAAATAAAATTAACAATATTTT-A-TATTTATTTATGTTCATAAAAATAAT
1 AATAAATAAATAATAAAACAAAATTAACAATATTTTAATTATTTATTTATATTCATAAAAATAAT
48227418 AATA
66 AATA
48227422 AATAAATAAA-AATAA
1 AATAAATAAATAATAA
48227437 TAAAAATAAT
Statistics
Matches: 77, Mismatches: 4, Indels: 7
0.88 0.05 0.08
Matches are distributed among these distances:
66 5 0.06
67 30 0.39
68 8 0.10
69 1 0.01
71 33 0.43
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (69 bp):
AATAAATAAATAATAAAACAAAATTAACAATATTTTAATTATTTATTTATATTCATAAAAATAAT
AATA
Found at i:48227432 original size:20 final size:19
Alignment explanation
Indices: 48227407--48227445 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
48227397 ATTTATGTTC
48227407 ATAAAAATAATAATAAATAA
1 ATAAAAATAATAA-AAATAA
48227427 ATAAAAATAATAAAAATAA
1 ATAAAAATAATAAAAATAA
48227446 TAGAATTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (19 bp):
ATAAAAATAATAAAAATAA
Found at i:48227438 original size:9 final size:9
Alignment explanation
Indices: 48227407--48227447 Score: 64
Period size: 9 Copynumber: 4.3 Consensus size: 9
48227397 ATTTATGTTC
48227407 ATAAAAATA
1 ATAAAAATA
48227416 ATAATAAATAA
1 ATAA-AAAT-A
48227427 ATAAAAATA
1 ATAAAAATA
48227436 ATAAAAATA
1 ATAAAAATA
48227445 ATA
1 ATA
48227448 GAATTGAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 17 0.57
10 8 0.27
11 5 0.17
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAAAAATA
Found at i:48229426 original size:21 final size:21
Alignment explanation
Indices: 48229400--48229439 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
48229390 GTGGTAACTT
*
48229400 TTTTTAATTATGTTATTTAAG
1 TTTTTAAATATGTTATTTAAG
48229421 TTTTTAAATATGTTATTTA
1 TTTTTAAATATGTTATTTA
48229440 TATTTGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
TTTTTAAATATGTTATTTAAG
Found at i:48230919 original size:11 final size:11
Alignment explanation
Indices: 48230903--48231003 Score: 82
Period size: 11 Copynumber: 8.9 Consensus size: 11
48230893 TACTTTGAAA
*
48230903 TTAAATTTATT
1 TTAAATTTAAT
48230914 TTAAATTTTAAT
1 TTAAA-TTTAAT
48230926 TT-AATTTAAAT
1 TTAAATTT-AAT
48230937 TTAAATTT-AT
1 TTAAATTTAAT
48230947 TTAAATTTAAT
1 TTAAATTTAAT
* *
48230958 TTAAGTTAGAAT
1 TTAAATT-TAAT
*
48230970 TT-AATTTAAAA
1 TTAAATTT-AAT
*
48230981 TTAAATATTATT
1 TTAAAT-TTAAT
48230993 TGTAAATTTAA
1 T-TAAATTTAA
48231004 AATGTTCATT
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
10 13 0.18
11 27 0.38
12 25 0.35
13 7 0.10
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:48230928 original size:5 final size:5
Alignment explanation
Indices: 48230901--48230978 Score: 59
Period size: 5 Copynumber: 14.4 Consensus size: 5
48230891 TTTACTTTGA
* *
48230901 AATTA AATTT ATTTT AAATTTT AATTT AATTT AAATTT AAATTT -ATTT
1 AATTT AATTT AATTT -AA-TTT AATTT AATTT -AATTT -AATTT AATTT
*
48230949 AAATTT AATTT AAGTTAG AATTT AATTT AA
1 -AATTT AATTT AA-TT-T AATTT AATTT AA
48230979 AATTAAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 14
0.76 0.06 0.17
Matches are distributed among these distances:
4 4 0.07
5 30 0.49
6 22 0.36
7 5 0.08
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (5 bp):
AATTT
Found at i:48230937 original size:6 final size:6
Alignment explanation
Indices: 48230903--48231004 Score: 76
Period size: 6 Copynumber: 17.8 Consensus size: 6
48230893 TACTTTGAAA
* *
48230903 TTAAAT TT-ATT TTAAAT TTTAAT TT-AAT TTAAAT TTAAAT TT--AT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * *
48230947 TTAAAT TT-AAT TT-AAG TTAGAAT TT-AAT TTAAAA TTAAAT ATT-ATT
1 TTAAAT TTAAAT TTAAAT TTA-AAT TTAAAT TTAAAT TTAAAT -TTAAAT
48230993 TGTAAAT TTAAA
1 T-TAAAT TTAAA
48231005 ATGTTCATTA
Statistics
Matches: 77, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
4 4 0.05
5 24 0.31
6 40 0.52
7 9 0.12
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (6 bp):
TTAAAT
Found at i:48230948 original size:27 final size:27
Alignment explanation
Indices: 48230918--48230978 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
48230908 TTTATTTTAA
*
48230918 ATTTTAATTTAATTTAAATTTA-AATTT
1 ATTTTAATTTAATTT-AAGTTAGAATTT
*
48230945 ATTTAAATTTAATTTAAGTTAGAATTT
1 ATTTTAATTTAATTTAAGTTAGAATTT
*
48230972 AATTTAA
1 ATTTTAA
48230979 AATTAAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (27 bp):
ATTTTAATTTAATTTAAGTTAGAATTT
Found at i:48230955 original size:44 final size:46
Alignment explanation
Indices: 48230903--48231003 Score: 98
Period size: 44 Copynumber: 2.2 Consensus size: 46
48230893 TACTTTGAAA
* ** *
48230903 TTAAATTTATTTTAAATTTTAATTTAATTTAAATTTAAAT-TTATT
1 TTAAATTTAATTTAAATTAGAATTTAATTTAAAATTAAATATTATT
* * * * *
48230948 TAAATTTAAT-TTAAGTTAGAATTTAATTTAAAATTAAATATTATT
1 TTAAATTTAATTTAAATTAGAATTTAATTTAAAATTAAATATTATT
48230993 TGTAAATTTAA
1 T-TAAATTTAA
48231004 AATGTTCATT
Statistics
Matches: 43, Mismatches: 11, Indels: 3
0.75 0.19 0.05
Matches are distributed among these distances:
44 25 0.58
45 13 0.30
46 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (46 bp):
TTAAATTTAATTTAAATTAGAATTTAATTTAAAATTAAATATTATT
Found at i:48230972 original size:17 final size:16
Alignment explanation
Indices: 48230889--48230978 Score: 101
Period size: 17 Copynumber: 5.4 Consensus size: 16
48230879 ACCATTTTAG
* *
48230889 AATTTACTTTGAAATTA
1 AATTTAATTT-AAATTT
*
48230906 AATTTATTTTAAATTTT
1 AATTTAATTTAAA-TTT
48230923 AATTTAATTTAAATTT
1 AATTTAATTTAAATTT
48230939 AAATTT-ATTTAAATTT
1 -AATTTAATTTAAATTT
*
48230955 AATTTAAGTTAGAATTT
1 AATTTAATTTA-AATTT
48230972 AATTTAA
1 AATTTAA
48230979 AATTAAATAT
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
15 5 0.08
16 20 0.31
17 40 0.62
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (16 bp):
AATTTAATTTAAATTT
Found at i:48232948 original size:29 final size:29
Alignment explanation
Indices: 48232882--48232941 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
48232872 CAAACAGTCC
* * * *
48232882 AGAAATTGCATTTTGACCCTAAAATTTCA
1 AGAAATTACATTCTGACCCCAAAATTACA
48232911 AGAAATTACATTCTGACCCCAAAACTTACA
1 AGAAATTACATTCTGACCCCAAAA-TTACA
48232941 A
1 A
48232942 AATTTACCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (29 bp):
AGAAATTACATTCTGACCCCAAAATTACA
Found at i:48232990 original size:59 final size:59
Alignment explanation
Indices: 48232940--48233253 Score: 386
Period size: 59 Copynumber: 5.4 Consensus size: 59
48232930 CAAAACTTAC
* * * * * * *
48232940 AAAATTTACCATTTTATCGCTGAACCTTCTAAAATTCCATTTTTAACCCCAATTTCACCA
1 AAAA-TTACCATTTTACCCCCGAAACTTCCAAAATTCCATTTTTAACCCCAACTTCACCG
*
48233000 AAAATTACCATTTTACCCCCGAAACTTCCAAAATTCCATTTTTAACCCCGACTTCACCG
1 AAAATTACCATTTTACCCCCGAAACTTCCAAAATTCCATTTTTAACCCCAACTTCACCG
*
48233059 AAAATTACCATTTTACCCCC-AAACTTCCAAAATTCCATTTTTAACCCCGACTTCACCG
1 AAAATTACCATTTTACCCCCGAAACTTCCAAAATTCCATTTTTAACCCCAACTTCACCG
* * ** * *
48233117 AAAATTACCATTTTACCCCC-AAACTTTCTAAAATACCATTTTTAACCCTGATTTCACCA
1 AAAATTACCATTTTACCCCCGAAAC-TTCCAAAATTCCATTTTTAACCCCAACTTCACCG
* * *
48233176 AAAATTACCATTTTACCCCC-AAACTCTCAAAAATTTCA-TTTTAACCCTAACTTCACC-
1 AAAATTACCATTTTACCCCCGAAACT-TCCAAAATTCCATTTTTAACCCCAACTTCACCG
* *
48233233 AAAATTACCATTCTGCCCCCG
1 AAAATTACCATTTTACCCCCG
48233254 GGTGTCCAAA
Statistics
Matches: 231, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
57 18 0.08
58 80 0.35
59 129 0.56
60 4 0.02
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.32
Consensus pattern (59 bp):
AAAATTACCATTTTACCCCCGAAACTTCCAAAATTCCATTTTTAACCCCAACTTCACCG
Found at i:48233092 original size:117 final size:117
Alignment explanation
Indices: 48232965--48233253 Score: 413
Period size: 117 Copynumber: 2.5 Consensus size: 117
48232955 ATCGCTGAAC
* *
48232965 CTTCTAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCGAAAC-TTCC
1 CTTCAAAAATTCCATTTTTAACCCCAACTTCACC-AAAATTACCATTTTACCCCCGAAACTTTCC
* *
48233029 AAAATTCCATTTTTAACCCCGACTTCACCGAAAATTACCATTTTACCCCCAAA
65 AAAATACCATTTTTAACCCCGACTTCACCAAAAATTACCATTTTACCCCCAAA
* * *
48233082 CTTCCAAAATTCCATTTTTAACCCCGACTTCACCGAAAATTACCATTTTACCCCC-AAACTTTCT
1 CTTCAAAAATTCCATTTTTAACCCCAACTTCACC-AAAATTACCATTTTACCCCCGAAACTTTCC
* *
48233146 AAAATACCATTTTTAACCCTGATTTCACCAAAAATTACCATTTTACCCCCAAA
65 AAAATACCATTTTTAACCCCGACTTCACCAAAAATTACCATTTTACCCCCAAA
* * * *
48233199 CTCTCAAAAATTTCA-TTTTAACCCTAACTTCACCAAAATTACCATTCTGCCCCCG
1 CT-TCAAAAATTCCATTTTTAACCCCAACTTCACCAAAATTACCATTTTACCCCCG
48233254 GGTGTCCAAA
Statistics
Matches: 154, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
116 22 0.14
117 122 0.79
118 10 0.06
ACGTcount: A:0.34, C:0.33, G:0.03, T:0.31
Consensus pattern (117 bp):
CTTCAAAAATTCCATTTTTAACCCCAACTTCACCAAAATTACCATTTTACCCCCGAAACTTTCCA
AAATACCATTTTTAACCCCGACTTCACCAAAAATTACCATTTTACCCCCAAA
Found at i:48233107 original size:58 final size:58
Alignment explanation
Indices: 48232965--48233244 Score: 402
Period size: 59 Copynumber: 4.8 Consensus size: 58
48232955 ATCGCTGAAC
* * *
48232965 CTTCTAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCGAAA
1 CTTCCAAAATTCCATTTTTAACCCCGACTTCACCAAAAATTACCATTTTACCCCC-AAA
*
48233024 CTTCCAAAATTCCATTTTTAACCCCGACTTCACCGAAAATTACCATTTTACCCCCAAA
1 CTTCCAAAATTCCATTTTTAACCCCGACTTCACCAAAAATTACCATTTTACCCCCAAA
*
48233082 CTTCCAAAATTCCATTTTTAACCCCGACTTCACCGAAAATTACCATTTTACCCCCAAA
1 CTTCCAAAATTCCATTTTTAACCCCGACTTCACCAAAAATTACCATTTTACCCCCAAA
* * * *
48233140 CTTTCTAAAATACCATTTTTAACCCTGATTTCACCAAAAATTACCATTTTACCCCCAAA
1 C-TTCCAAAATTCCATTTTTAACCCCGACTTCACCAAAAATTACCATTTTACCCCCAAA
* * **
48233199 CTCTCAAAAATTTCA-TTTTAACCCTAACTTCACC-AAAATTACCATT
1 CT-TCCAAAATTCCATTTTTAACCCCGACTTCACCAAAAATTACCATT
48233245 CTGCCCCCGG
Statistics
Matches: 205, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
57 12 0.06
58 80 0.39
59 113 0.55
ACGTcount: A:0.35, C:0.31, G:0.02, T:0.32
Consensus pattern (58 bp):
CTTCCAAAATTCCATTTTTAACCCCGACTTCACCAAAAATTACCATTTTACCCCCAAA
Found at i:48234603 original size:21 final size:21
Alignment explanation
Indices: 48234577--48234626 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
48234567 GTTCAATTAC
48234577 TTAGAATGTTTGCATTGTCAA
1 TTAGAATGTTTGCATTGTCAA
48234598 TTAGAATGTTTGCATTGTCAA
1 TTAGAATGTTTGCATTGTCAA
48234619 TTAGAATG
1 TTAGAATG
48234627 GTTAAATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (21 bp):
TTAGAATGTTTGCATTGTCAA
Found at i:48240327 original size:25 final size:25
Alignment explanation
Indices: 48240299--48240348 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
48240289 AAAATTGGGT
48240299 TAAACTTAAGTATTAATTAATGTTG
1 TAAACTTAAGTATTAATTAATGTTG
48240324 TAAACTTAAGTATTAATTAATGTTG
1 TAAACTTAAGTATTAATTAATGTTG
48240349 AAGGAGTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (25 bp):
TAAACTTAAGTATTAATTAATGTTG
Found at i:48243006 original size:23 final size:23
Alignment explanation
Indices: 48242974--48243034 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
48242964 CCTGAGCCCA
*
48242974 TGAAAAGAACTGATTC-TGTTCCT
1 TGAAAAGAACTGA-TCATATTCCT
*
48242997 TGAAAGGAACTGATCATATTCCT
1 TGAAAAGAACTGATCATATTCCT
*
48243020 TGAAAAGAACAGATC
1 TGAAAAGAACTGATC
48243035 GCCACTACCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 2 0.06
23 31 0.94
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (23 bp):
TGAAAAGAACTGATCATATTCCT
Found at i:48243770 original size:11 final size:11
Alignment explanation
Indices: 48243756--48243781 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
48243746 TTATCTTAAA
48243756 TTTGAATTTGT
1 TTTGAATTTGT
48243767 TTTGAATTTGT
1 TTTGAATTTGT
48243778 TTTG
1 TTTG
48243782 GATAGATGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.19, T:0.65
Consensus pattern (11 bp):
TTTGAATTTGT
Found at i:48247999 original size:21 final size:20
Alignment explanation
Indices: 48247970--48248008 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
48247960 CAAATGTGCT
*
48247970 AAAATTATTAATTTAAAATAA
1 AAAAATATT-ATTTAAAATAA
*
48247991 AAAAATATTTTTTAAAAT
1 AAAAATATTATTTAAAAT
48248009 TATACAACTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAATATTATTTAAAATAA
Found at i:48254335 original size:246 final size:246
Alignment explanation
Indices: 48253887--48254351 Score: 616
Period size: 246 Copynumber: 1.9 Consensus size: 246
48253877 CATTATCTAA
* *
48253887 ATTCTTTACCATTTTAGGTGGAGATGAAAGGAAAGTATCCCCCCAAACATCAGGATGAAAATTGG
1 ATTCTTTACCATTTTAGATGGAGATGAAAGGAAAGTATCCCCCCAAACAGCAGGATGAAAATTGG
* * * * ** *
48253952 CTGAGGGACGGTTCTGGTGGGACATGGATCCATTAGTTGAAAGAGGAAGCTTTGATGAGGAAATT
66 CTAAGGGACGATTCTGGTGAGACATGGACCCAAGAATTGAAAGAGGAAGCTTTGATGAGGAAATT
* *
48254017 TGAGAAGCCATTTCTTTAGCTAGTAAATATGTCGGAAACACTACAAAATGAGATGAATTGGTGTG
131 TGAGAAGCCATTTCTTTAGCTAGCAAATATGTCGGAAACACTACAAAATGAGATGAAATGGTGTG
*
48254082 AGCCAAAGAGCTCTTATGTTGTAGTATTTATAGAGTTTTCTCGGCATGGAG
196 AGCCAAAGAGCTCGTATGTTGTAGTATTTATAGAGTTTTCTCGGCATGGAG
* * * * *
48254133 ATTCTTTTCCATTTTAGATGGAGATGAAATGAAAGTGTCCCCCCAAAC-GCAATGATGAAAGTTG
1 ATTCTTTACCATTTTAGATGGAGATGAAAGGAAAGTATCCCCCCAAACAGC-AGGATGAAAATTG
* * * *
48254197 GCTAAGGGACGATTTTGGTTAGACATGGACCCAAGAATTG-AAGAAGGAAGCTTTGATGATGATA
65 GCTAAGGGACGATTCTGGTGAGACATGGACCCAAGAATTGAAAG-AGGAAGCTTTGATGAGGAAA
* * *
48254261 TTTGAGAAGACC-TTTGC-TTAGCTAGCGATTATGGT-GGAAACACTACAAAATGTGATGAAATG
129 TTTGAGAAG-CCATTT-CTTTAGCTAGCAAATAT-GTCGGAAACACTACAAAATGAGATGAAATG
* *
48254323 GTTTGGGCCAAAGAGCTCGTATGTTGTAG
191 GTGTGAGCCAAAGAGCTCGTATGTTGTAG
48254352 AGGTGGTTGG
Statistics
Matches: 188, Mismatches: 26, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
245 4 0.02
246 179 0.95
247 5 0.03
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (246 bp):
ATTCTTTACCATTTTAGATGGAGATGAAAGGAAAGTATCCCCCCAAACAGCAGGATGAAAATTGG
CTAAGGGACGATTCTGGTGAGACATGGACCCAAGAATTGAAAGAGGAAGCTTTGATGAGGAAATT
TGAGAAGCCATTTCTTTAGCTAGCAAATATGTCGGAAACACTACAAAATGAGATGAAATGGTGTG
AGCCAAAGAGCTCGTATGTTGTAGTATTTATAGAGTTTTCTCGGCATGGAG
Found at i:48258239 original size:30 final size:31
Alignment explanation
Indices: 48258185--48258254 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
48258175 AGTGGTCCCG
* * *
48258185 TGATATAAATAAAAATATTTGAATAGTTTAA
1 TGATTTAAATAAAAATATTTGAATAATTCAA
48258216 TGATTTAAAT-AAAAT-TTTCGAATAATTCAA
1 TGATTTAAATAAAAATATTT-GAATAATTCAA
48258246 TGA-TTAAAT
1 TGATTTAAAT
48258255 TATATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 9 0.26
30 17 0.49
31 9 0.26
ACGTcount: A:0.49, C:0.03, G:0.09, T:0.40
Consensus pattern (31 bp):
TGATTTAAATAAAAATATTTGAATAATTCAA
Found at i:48258891 original size:19 final size:18
Alignment explanation
Indices: 48258859--48258894 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
48258849 ACAATTAATT
*
48258859 AATTTTTAATATTTTATG
1 AATTTTTAAAATTTTATG
48258877 AATTTTTAAAAATTTTAT
1 AATTTTT-AAAATTTTAT
48258895 AGTATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
AATTTTTAAAATTTTATG
Found at i:48265422 original size:17 final size:15
Alignment explanation
Indices: 48265384--48265422 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 15
48265374 TACAGAAATT
48265384 TATAAAAATTCAATA
1 TATAAAAATTCAATA
48265399 TATTAAACAATTCAATAA
1 TA-TAAA-AATTCAAT-A
48265417 TATAAA
1 TATAAA
48265423 TAGTAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.10
16 4 0.19
17 12 0.57
18 3 0.14
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (15 bp):
TATAAAAATTCAATA
Found at i:48265774 original size:18 final size:18
Alignment explanation
Indices: 48265751--48265787 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
48265741 TATAGTTTGA
*
48265751 TATTCGATTTATTCGAAT
1 TATTCGAGTTATTCGAAT
*
48265769 TATTCGAGTTATTTGAAT
1 TATTCGAGTTATTCGAAT
48265787 T
1 T
48265788 CGAAAACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAT
Found at i:48266282 original size:14 final size:16
Alignment explanation
Indices: 48266250--48266283 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
48266240 GGAGTATAAT
48266250 AAAATATTAAAAAATA
1 AAAATATTAAAAAATA
48266266 AAAAT-TTAAAAAA-A
1 AAAATATTAAAAAATA
48266280 AAAA
1 AAAA
48266284 GACTAATGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 8 0.44
16 5 0.28
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATATTAAAAAATA
Found at i:48270106 original size:20 final size:19
Alignment explanation
Indices: 48270045--48270106 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
48270035 AATAGTGTAG
48270045 TTTTAATTTTAAATATAGGA
1 TTTTAATTTTAAATATA-GA
* * *
48270065 TTTTTATTTTAACT-T--T
1 TTTTAATTTTAAATATAGA
48270081 TTTTAATTTTAAATATAAGA
1 TTTTAATTTTAAATAT-AGA
48270101 TTTTAA
1 TTTTAA
48270107 AAAACTTTTG
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 12 0.38
17 1 0.03
19 1 0.03
20 18 0.56
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTTAATTTTAAATATAGA
Found at i:48275772 original size:30 final size:29
Alignment explanation
Indices: 48275738--48276103 Score: 222
Period size: 30 Copynumber: 12.2 Consensus size: 29
48275728 AGAGGTCCCT
* *
48275738 AAACTATCCAAAAATTACATTTTGACGCCC
1 AAACTTTCCAAAAATTATATTTTGAC-CCC
* *
48275768 AAACTTTTCC-AAAATTATATTTTAAACCCA
1 AAAC-TTTCCAAAAATTATATTTT-GACCCC
* *
48275798 AAACTTTCTAAAAATTACATTTTGACCCTC
1 AAACTTTCCAAAAATTATATTTTGACCC-C
* *
48275828 AAACTTCTCC-AAAATTTTATTTTAACCCC
1 AAACTT-TCCAAAAATTATATTTTGACCCC
* *
48275857 TAAACTTTCTAAAAATCATATTTTGACCCC
1 -AAACTTTCCAAAAATTATATTTTGACCCC
* *
48275887 TAAACTTCTCC-AAAATTACATTTTGACCCAT
1 -AAACTT-TCCAAAAATTATATTTTGACCC-C
*
48275918 AAACTTTTCC-AAAATTATATTTTGACACCA
1 AAAC-TTTCCAAAAATTATATTTTGAC-CCC
* * *
48275948 AAACTTTCTAAAAATTATACTTTGACCCTA
1 AAACTTTCCAAAAATTATATTTTGACCC-C
* *** * *
48275978 AAAATTTTTGAAAATTATATTTTAACCCGT
1 AAACTTTCCAAAAATTATATTTTGACCC-C
* * *
48276008 AAACTTTTTC-AAATTTATATTTTAACCCC
1 AAAC-TTTCCAAAAATTATATTTTGACCCC
*** * * *
48276037 AAAACTTTTTGAAAATTACATTTTAACCCGT
1 -AAACTTTCCAAAAATTATATTTTGACCC-C
* * * *
48276068 AAAATTTTC-AAAATTATATTTTAACCTCG
1 AAACTTTCCAAAAATTATATTTTGACC-CC
48276097 AAACTTT
1 AAACTTT
48276104 TTGAATTACC
Statistics
Matches: 274, Mismatches: 44, Indels: 37
0.77 0.12 0.10
Matches are distributed among these distances:
29 43 0.16
30 213 0.78
31 18 0.07
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (29 bp):
AAACTTTCCAAAAATTATATTTTGACCCC
Found at i:48275831 original size:60 final size:59
Alignment explanation
Indices: 48275738--48276140 Score: 304
Period size: 60 Copynumber: 6.8 Consensus size: 59
48275728 AGAGGTCCCT
* *
48275738 AAACTATCCAAAAATTACATTTTGACGCCCAAACTTTTCCAAAATTATATTTTAAACCCA
1 AAACTTTCTAAAAATTACATTTTGAC-CCCAAACTTTTCCAAAATTATATTTTAAACCCA
* * * *
48275798 AAACTTTCTAAAAATTACATTTTGACCCTCAAACTTCTCCAAAATTTTATTTTAACCCCT
1 AAACTTTCTAAAAATTACATTTTGACCC-CAAACTTTTCCAAAATTATATTTTAAACCCA
* * * * *
48275858 AAACTTTCTAAAAATCATATTTTGACCCCTAAACTTCTCCAAAATTACATTTT-GACCCA
1 AAACTTTCTAAAAATTACATTTTGACCCC-AAACTTTTCCAAAATTATATTTTAAACCCA
* * * * * *
48275917 TAAACTTT-TCCAAAATTATATTTTGACACCAAAAC-TTTCTAAAAATTATACTTT-GACCCTA
1 -AAACTTTCT-AAAAATTACATTTTGAC-CCCAAACTTTTC-CAAAATTATATTTTAAACCC-A
* * * * * * * * *
48275978 AAAATTTTTGAAAATTATATTTTAACCCGTAAACTTTTTCAAATTTATATTTTAACCCCA
1 AAACTTTCTAAAAATTACATTTTGACCC-CAAACTTTTCCAAAATTATATTTTAAACCCA
* * * * * *
48276038 AAACTTTTTGAAAATTACATTTTAACCCGTAAAATTTT-CAAAATTATATTTT-AACCTCG
1 AAACTTTCTAAAAATTACATTTTGACCC-CAAACTTTTCCAAAATTATATTTTAAACC-CA
** *
48276097 AAACTTT-T-TGAATTACCA-TTTCACCCCTAAAC-TTTCCAAAATTA
1 AAACTTTCTAAAAATTA-CATTTTGACCCC-AAACTTTTCCAAAATTA
48276141 CCATTTACCC
Statistics
Matches: 287, Mismatches: 41, Indels: 33
0.80 0.11 0.09
Matches are distributed among these distances:
56 3 0.01
57 23 0.08
58 6 0.02
59 33 0.11
60 212 0.74
61 10 0.03
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.37
Consensus pattern (59 bp):
AAACTTTCTAAAAATTACATTTTGACCCCAAACTTTTCCAAAATTATATTTTAAACCCA
Found at i:48276072 original size:90 final size:89
Alignment explanation
Indices: 48275778--48276104 Score: 331
Period size: 90 Copynumber: 3.6 Consensus size: 89
48275768 AAACTTTTCC
* * * *
48275778 AAAATTATATTTTAAACCC-AAAACTTTCTAAAAATTACATTTTGACCC-TCAAACTTCTCCAAA
1 AAAATTATATTTT-AACCCTAAAA-TTTTTCAAAATTACATTTTAACCCGT-AAACTTTTCC-AA
*
48275841 ATTT-TATTTTAACCCCTAAACTTTCTA
62 ATTTATATTTTAACCCCAAAACTTTCTA
* * * * * * * *
48275868 AAAATCATATTTTGACCCCTAAACTTCTCCAAAATTACATTTTGACCCATAAACTTTTCCAAAAT
1 AAAATTATATTTT-AACCCTAAAATTTTTCAAAATTACATTTTAACCCGTAAACTTTTCCAAATT
* *
48275933 TATATTTTGACACCAAAACTTTCTA
65 TATATTTTAACCCCAAAACTTTCTA
* * * * *
48275958 AAAATTATACTTTGACCCTAAAAATTTTTGAAAATTATATTTTAACCCGTAAACTTTTTCAAATT
1 AAAATTATATTTTAACCCT-AAAATTTTTCAAAATTACATTTTAACCCGTAAACTTTTCCAAATT
* *
48276023 TATATTTTAACCCCAAAACTTTTTG
65 TATATTTTAACCCCAAAACTTTCTA
* *
48276048 AAAATTACATTTTAACCCGTAAAA-TTTTCAAAATTATATTTTAACCTCG-AAACTTTT
1 AAAATTATATTTTAACCC-TAAAATTTTTCAAAATTACATTTTAACC-CGTAAACTTTT
48276105 TGAATTACCA
Statistics
Matches: 197, Mismatches: 34, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
89 38 0.19
90 154 0.78
91 5 0.03
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.39
Consensus pattern (89 bp):
AAAATTATATTTTAACCCTAAAATTTTTCAAAATTACATTTTAACCCGTAAACTTTTCCAAATTT
ATATTTTAACCCCAAAACTTTCTA
Found at i:48276117 original size:29 final size:28
Alignment explanation
Indices: 48275989--48276131 Score: 119
Period size: 30 Copynumber: 4.9 Consensus size: 28
48275979 AAATTTTTGA
*
48275989 AAATTATATTTTAACCCGTAAACTTTTT
1 AAATTACATTTTAACCCGTAAACTTTTT
* **
48276017 CAAATTTATATTTTAACCCCAAAACTTTTT
1 -AAA-TTACATTTTAACCCGTAAACTTTTT
* *
48276047 GAAAATTACATTTTAACCCGTAAAATTTTCA
1 --AAATTACATTTTAACCCGTAAACTTTT-T
*
48276078 AAATTATATTTTAACCTCG-AAACTTTTT
1 AAATTACATTTTAACC-CGTAAACTTTTT
* * *
48276106 GAATTACCA-TTTCACCCCTAAACTTT
1 AAATTA-CATTTTAACCCGTAAACTTT
48276132 CCAAAATTAC
Statistics
Matches: 93, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.01
28 18 0.19
29 26 0.28
30 45 0.48
31 3 0.03
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.41
Consensus pattern (28 bp):
AAATTACATTTTAACCCGTAAACTTTTT
Found at i:48276660 original size:97 final size:97
Alignment explanation
Indices: 48276541--48276717 Score: 225
Period size: 98 Copynumber: 1.8 Consensus size: 97
48276531 AAAACTTTAA
* * *
48276541 AATCGAGGTAATATTCTTTTA-TTTCGAGTT-TCGAAATTTTGCGCCCTAACTTACTAGATGCAA
1 AATCGAGGCAATATTCTTTTATTTTCGA-TTATCGAAAATTTACGCCCTAACTTACTAGATGCAA
**
48276604 TTTTTCTTCAAAATCGAAATTATCGAATAGCTGT
65 CCTTTCTTC-AAATCGAAATTATCGAATAGCTGT
* * * *
48276638 AATCGAGGCAATGTT-TTCTTATTTTCGATTATGGAAAATTTACGCCTTAACTTACTAGGTGCAA
1 AATCGAGGCAATATTCTT-TTATTTTCGATTATCGAAAATTTACGCCCTAACTTACTAGATGCAA
48276702 CCTTTCTTCAAATCGA
65 CCTTTCTTCAAATCGA
48276718 GATAATCAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
96 2 0.03
97 25 0.37
98 41 0.60
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (97 bp):
AATCGAGGCAATATTCTTTTATTTTCGATTATCGAAAATTTACGCCCTAACTTACTAGATGCAAC
CTTTCTTCAAATCGAAATTATCGAATAGCTGT
Found at i:48281735 original size:15 final size:15
Alignment explanation
Indices: 48281713--48281797 Score: 75
Period size: 15 Copynumber: 5.6 Consensus size: 15
48281703 TTCAATGAAT
*
48281713 AAAAGAAAAAAAAGA
1 AAAAGAAAAAAAAAA
*
48281728 AGAAGAAAAATAAAAA
1 AAAAGAAAAA-AAAAA
*
48281744 GAAAA-AAAAAGAAAA
1 -AAAAGAAAAAAAAAA
*
48281759 AAACGAAAAAAAACAA
1 AAAAGAAAAAAAA-AA
* *
48281775 ACAAG-AAAAAAAGA
1 AAAAGAAAAAAAAAA
48281789 AAAAGAAAA
1 AAAAGAAAA
48281798 GGAGAGGTCG
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
14 8 0.15
15 30 0.55
16 14 0.25
17 3 0.05
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.01
Consensus pattern (15 bp):
AAAAGAAAAAAAAAA
Found at i:48281744 original size:18 final size:17
Alignment explanation
Indices: 48281721--48281795 Score: 84
Period size: 16 Copynumber: 4.5 Consensus size: 17
48281711 ATAAAAGAAA
*
48281721 AAAAAGAAGAAGAAAAAT
1 AAAAAGAAGAA-AAAAAG
48281739 AAAAAGAA-AAAAAAAG
1 AAAAAGAAGAAAAAAAG
48281755 AAAAA-AACGAAAAAAA-
1 AAAAAGAA-GAAAAAAAG
* *
48281771 ACAAACAAGAAAAAAAG
1 AAAAAGAAGAAAAAAAG
48281788 AAAAAGAA
1 AAAAAGAA
48281796 AAGGAGAGGT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
15 2 0.04
16 22 0.45
17 17 0.35
18 8 0.16
ACGTcount: A:0.83, C:0.04, G:0.12, T:0.01
Consensus pattern (17 bp):
AAAAAGAAGAAAAAAAG
Found at i:48281755 original size:25 final size:24
Alignment explanation
Indices: 48281713--48281797 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 24
48281703 TTCAATGAAT
*
48281713 AAAAGAAAAAAAAGAAGAAGAAAAATA
1 AAAAG-AAAAAAA-AAGAA-AAAAAGA
48281740 AAAAGAAAAAAAAAGAAAAAAACGA
1 AAAAGAAAAAAAAAGAAAAAAA-GA
*
48281765 AAAA-AAACAAACAAGAAAAAAAGA
1 AAAAGAAA-AAAAAAGAAAAAAAGA
48281789 AAAAGAAAA
1 AAAAGAAAA
48281798 GGAGAGGTCG
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
24 15 0.28
25 26 0.49
26 7 0.13
27 5 0.09
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.01
Consensus pattern (24 bp):
AAAAGAAAAAAAAAGAAAAAAAGA
Found at i:48281781 original size:35 final size:37
Alignment explanation
Indices: 48281713--48281797 Score: 100
Period size: 37 Copynumber: 2.2 Consensus size: 37
48281703 TTCAATGAAT
48281713 AAAAGAAAAAAAAGAAGAAGAAAAATAAAAAGAAAAA
1 AAAAGAAAAAAAAGAAGAAGAAAAATAAAAAGAAAAA
* * * *
48281750 AAAAGAAAAAAACGAAAAAAAACAAACAAGAAA-AAAAGA
1 AAAAGAAAAAAAAGAAGAAGAA-AAATAA-AAAGAAAA-A
48281789 AAAAGAAAA
1 AAAAGAAAA
48281798 GGAGAGGTCG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
37 19 0.46
38 9 0.22
39 13 0.32
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.01
Consensus pattern (37 bp):
AAAAGAAAAAAAAGAAGAAGAAAAATAAAAAGAAAAA
Found at i:48281784 original size:33 final size:31
Alignment explanation
Indices: 48281715--48281792 Score: 88
Period size: 33 Copynumber: 2.5 Consensus size: 31
48281705 CAATGAATAA
* * * *
48281715 AAGAAAAAAA-AGAAGAAGAAAAATAAAAAG
1 AAGAAAAAAAGAAAAAAAGAAAAAAAAAAAC
48281745 AA-AAAAAAAGAAAAAAACGAAAAAAAACAAAC
1 AAGAAAAAAAGAAAAAAA-GAAAAAAAA-AAAC
48281777 AAGAAAAAAAGAAAAA
1 AAGAAAAAAAGAAAAA
48281793 GAAAAGGAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 7 0.17
30 7 0.17
31 8 0.20
32 5 0.12
33 13 0.32
ACGTcount: A:0.83, C:0.04, G:0.12, T:0.01
Consensus pattern (31 bp):
AAGAAAAAAAGAAAAAAAGAAAAAAAAAAAC
Found at i:48283158 original size:51 final size:51
Alignment explanation
Indices: 48283102--48283267 Score: 151
Period size: 51 Copynumber: 3.3 Consensus size: 51
48283092 AAGACACGAC
*
48283102 GGGAAAGATCTAAGATCGTAATGACAGATCTAGTACCGTAAAAACAGAAAA
1 GGGAAAGATCTAAGATCGTAATGGCAGATCTAGTACCGTAAAAACAGAAAA
* * * * * *
48283153 GGGAAAGGTCTAAG-TCATAACGGCGGGTCGT-GTACC-TCAGAAACATGAAAA
1 GGGAAAGATCTAAGATCGTAATGGCAGATC-TAGTACCGT-AAAAACA-GAAAA
* * * * * *
48283204 -GGAAATATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAA
1 GGGAAAGATCTAAGATCGTAATGGCAGATCTAGTACCGTAAAAACAGAAAA
*
48283254 GGGAAAGGTCTAAG
1 GGGAAAGATCTAAG
48283268 TCGCAACGGC
Statistics
Matches: 87, Mismatches: 21, Indels: 14
0.71 0.17 0.11
Matches are distributed among these distances:
49 1 0.01
50 36 0.41
51 50 0.57
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.16
Consensus pattern (51 bp):
GGGAAAGATCTAAGATCGTAATGGCAGATCTAGTACCGTAAAAACAGAAAA
Found at i:48283175 original size:101 final size:100
Alignment explanation
Indices: 48283001--48283661 Score: 804
Period size: 101 Copynumber: 6.6 Consensus size: 100
48282991 CAGGTTCGAC
* * * *
48283001 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCGCAAAGATACTAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
* * *
48283066 TCGCAACGGAGGACTGTGTACCTCAGAAGACACGAC
66 TCGCAACGGCGGACTGTGTACCTCAGAAG-CATGAA
* * * * * *
48283102 GGGAAAGATCTAAGATCGTAATGACAGATCTAGTACCGTAAAAACAGAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
** * *
48283167 TCATAACGGCGG-GTCGTGTACCTCAGAAACATGAAA
66 TCGCAACGGCGGACT-GTGTACCTCAGAAGCATG-AA
* *
48283203 AGGAAATATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
* * *
48283268 TCGCAACGGCGGACCGTGTACCTCAGAAGACACGAC
66 TCGCAACGGCGGACTGTGTACCTCAGAAG-CATGAA
* * *** * * *
48283304 GGGAAAGATATAAGACCGCAATGACAGATCCAGTACAATAAAAATAGAAAAGGGAAAGGTTTAAG
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
* * *
48283369 TCACAACGGCGGATTGTGTACCTCAGAAGCATGAG
66 TCGCAACGGCGGACTGTGTACCTCAGAAGCATGAA
* * * * * * *
48283404 GGGAAAGATCTAAGACTGCAACGGCGGATCCAATACCGCAAAGATACAGAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
* *
48283469 TCGCAATGGTGGA-TCGTGTACCTCAGAAGCATGAAA
66 TCGCAACGGCGGACT-GTGTACCTCAGAAGCATG-AA
*
48283505 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAGAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
* * * *
48283570 TCGGAACGGCAGACCGTGTAGCTCAGAAGCATGAA
66 TCGCAACGGCGGACTGTGTACCTCAGAAGCATGAA
* * *
48283605 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAA
1 GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAA
48283662 AGTTTTTATC
Statistics
Matches: 473, Mismatches: 80, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
99 1 0.00
100 143 0.30
101 326 0.69
102 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (100 bp):
GGGAAAGATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
TCGCAACGGCGGACTGTGTACCTCAGAAGCATGAA
Found at i:48283355 original size:202 final size:201
Alignment explanation
Indices: 48283001--48283661 Score: 919
Period size: 201 Copynumber: 3.3 Consensus size: 201
48282991 CAGGTTCGAC
* * *
48283001 GGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCGCAAAGATACTAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAATACAAAAGGGAAAGGTCTAAG
* * *
48283066 TCGCAACGGAGGACTGTGTACCTCAGAAGACACGACGGGAAAGATCTAAGATCGTAATGACAGAT
66 TCGCAACGGAGGACCGTGTACCTCAGAAGACACGACGGGAAAGATCTAAGACCGCAATGACAGAT
* * * *
48283131 CTAGTACCGTAAAAACAGAAAAGGGAAAGGTCTAAGTCATAACGGCGGGTCGTGTACCTCAGAAA
131 CCAGTACCGTAAAAACAGAAAAGGGAAAGGTCTAAGTCACAACGGCGGATCGTGTACCTCAGAAG
48283196 CATGAAA
196 CATG-AA
* * * * *
48283203 AGGAAATATCTAAGACCGCAATGGCAGATCCAGTACCGCAAAAACACAAAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAATACAAAAGGGAAAGGTCTAAG
* *
48283268 TCGCAACGGCGGACCGTGTACCTCAGAAGACACGACGGGAAAGATATAAGACCGCAATGACAGAT
66 TCGCAACGGAGGACCGTGTACCTCAGAAGACACGACGGGAAAGATCTAAGACCGCAATGACAGAT
** * * *
48283333 CCAGTACAATAAAAATAGAAAAGGGAAAGGTTTAAGTCACAACGGCGGATTGTGTACCTCAGAAG
131 CCAGTACCGTAAAAACAGAAAAGGGAAAGGTCTAAGTCACAACGGCGGATCGTGTACCTCAGAAG
*
48283398 CATGAG
196 CATGAA
* * * *
48283404 GGGAAAGATCTAAGACTGCAACGGCGGATCCAATACCGCAAAGATACAGAAGGGAAAGGTCTAAG
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAATACAAAAGGGAAAGGTCTAAG
* * * * * *
48283469 TCGCAATGGTGGATCGTGTACCTCAGAAG-CATGAAAGGGAAAGATCTAAGACCGCAATGGCAGA
66 TCGCAACGGAGGACCGTGTACCTCAGAAGACACG-ACGGGAAAGATCTAAGACCGCAATGACAGA
* * * ** * * *
48283533 TCCAGTACCGCAAAAACACAGAAGGGAAAGGTCTAAGTCGGAACGGCAGACCGTGTAGCTCAGAA
130 TCCAGTACCGTAAAAACAGAAAAGGGAAAGGTCTAAGTCACAACGGCGGATCGTGTACCTCAGAA
48283598 GCATGAA
195 GCATGAA
*
48283605 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAAGACAAAAGGGAAA
1 GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAATACAAAAGGGAAA
48283662 AGTTTTTATC
Statistics
Matches: 402, Mismatches: 56, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
200 3 0.01
201 220 0.55
202 179 0.45
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (201 bp):
GGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAAATACAAAAGGGAAAGGTCTAAG
TCGCAACGGAGGACCGTGTACCTCAGAAGACACGACGGGAAAGATCTAAGACCGCAATGACAGAT
CCAGTACCGTAAAAACAGAAAAGGGAAAGGTCTAAGTCACAACGGCGGATCGTGTACCTCAGAAG
CATGAA
Found at i:48283886 original size:92 final size:92
Alignment explanation
Indices: 48283666--48283937 Score: 413
Period size: 92 Copynumber: 3.0 Consensus size: 92
48283656 GGGAAAAGTT
* * * **
48283666 TTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATAAAGCTTTAAACATCAATTCTTATCCTCTCAA
1 TTTATCTCTCTGAAGTTATAGTAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGA
*
48283731 AGTTAT-A-GAAGTTGGATAACGAACC
66 AGTTATAATAAAGTTGGATAACGAACC
*
48283756 TTTATATCTCTGAAGTTATAGTAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGA
1 TTTATCTCTCTGAAGTTATAGTAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGA
** *
48283821 AGTTATAATAAAGTTGGATAGTGAATC
66 AGTTATAATAAAGTTGGATAACGAACC
* *
48283848 TTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCATCCTCTTGA
1 TTTATCTCTCTGAAGTTATAGTAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGA
*
48283913 AGTTATAGTAAAGTTGGATAACGAA
66 AGTTATAATAAAGTTGGATAACGAA
48283938 GCTTCAAATG
Statistics
Matches: 164, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
90 65 0.40
91 1 0.01
92 98 0.60
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (92 bp):
TTTATCTCTCTGAAGTTATAGTAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGA
AGTTATAATAAAGTTGGATAACGAACC
Found at i:48283951 original size:54 final size:54
Alignment explanation
Indices: 48283881--48283989 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
48283871 AGAGCAAGAT
48283881 GAAGCTTCAAACGTCAATTCTCATCCTCTTGAAGTTATAGTAAAGTTGGATAAC
1 GAAGCTTCAAACGTCAATTCTCATCCTCTTGAAGTTATAGTAAAGTTGGATAAC
* *
48283935 GAAGCTTCAAATGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAAC
1 GAAGCTTCAAACGTCAATTCTCATCCTCTTGAAGTTATAGTAAAGTTGGATAAC
48283989 G
1 G
48283990 TACCTTTATC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (54 bp):
GAAGCTTCAAACGTCAATTCTCATCCTCTTGAAGTTATAGTAAAGTTGGATAAC
Found at i:48283999 original size:40 final size:39
Alignment explanation
Indices: 48283955--48284107 Score: 103
Period size: 40 Copynumber: 3.6 Consensus size: 39
48283945 ATGTCAATTC
48283955 TTATCCTCTTGAAGTTATAGTAAAGTTGGATAACGTACCT
1 TTAT-CTCTTGAAGTTATAGTAAAGTTGGATAACGTACCT
* * * **
48283995 TTATCT-TTAAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATT
1 TTATCTCTTGAAGTTATAGT---A--AAGTTG--G-AT--AACGT-ACCT
48284044 CTTATCCTCTTGAAGTTATAGTAAAGTTGGATAACG-ATCCT
1 -TTAT-CTCTTGAAGTTATAGTAAAGTTGGATAACGTA-CCT
48284085 TTATCTCTCTGAAGTTATAGTAA
1 TTATCTCT-TGAAGTTATAGTAA
48284108 GAGCAAGATG
Statistics
Matches: 87, Mismatches: 10, Indels: 32
0.67 0.08 0.25
Matches are distributed among these distances:
38 12 0.14
39 6 0.07
40 23 0.26
41 2 0.02
42 4 0.05
43 5 0.06
44 1 0.01
45 2 0.02
46 1 0.01
47 5 0.06
48 5 0.06
49 3 0.03
50 4 0.05
51 2 0.02
52 12 0.14
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (39 bp):
TTATCTCTTGAAGTTATAGTAAAGTTGGATAACGTACCT
Found at i:48284051 original size:144 final size:146
Alignment explanation
Indices: 48283790--48284080 Score: 496
Period size: 144 Copynumber: 2.0 Consensus size: 146
48283780 GAGCAAGATA
** *
48283790 AAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAATAAAGTTGGATAGTGAATCTTTATCT
1 AAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAATAAAGTTGGATAACGAACCTTTATCT
*
48283855 CTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCATCCTCTTGAAGTTATA
66 CTCTAAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCATCCTCTTGAAGTTATA
48283920 GTAAAGTTGGATAACG
131 GTAAAGTTGGATAACG
* * *
48283936 AAGCTTCAAATGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAACGTACCTTTATCT
1 AAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAATAAAGTTGGATAACGAACCTTTATCT
*
48284001 -T-TAAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATA
66 CTCTAAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCATCCTCTTGAAGTTATA
48284064 GTAAAGTTGGATAACG
131 GTAAAGTTGGATAACG
48284080 A
1 A
48284081 TCCTTTATCT
Statistics
Matches: 137, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
144 77 0.56
145 1 0.01
146 59 0.43
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (146 bp):
AAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAATAAAGTTGGATAACGAACCTTTATCT
CTCTAAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCATCCTCTTGAAGTTATA
GTAAAGTTGGATAACG
Found at i:48284061 original size:52 final size:52
Alignment explanation
Indices: 48284004--48284159 Score: 160
Period size: 52 Copynumber: 3.2 Consensus size: 52
48283994 TTTATCTTTA
48284004 AAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
1 AAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
* * *
48284056 AAGTTATAGT---A--AAGTTG--G-AT--AACGATC--CT-TTATCTCTC-TG
1 AAGTTATAGTAAGAGCAAGATGAAGCTTCAAACG-TCAATTCTTATC-CTCTTG
*
48284096 AAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTA
1 AAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
48284148 AAGTTATAGTAA
1 AAGTTATAGTAA
48284160 AGCCGGATAA
Statistics
Matches: 81, Mismatches: 7, Indels: 32
0.68 0.06 0.27
Matches are distributed among these distances:
40 17 0.21
41 4 0.05
42 4 0.05
43 3 0.04
44 1 0.01
45 6 0.07
47 6 0.07
48 1 0.01
49 3 0.04
50 4 0.05
51 4 0.05
52 28 0.35
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (52 bp):
AAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTG
Found at i:48284067 original size:90 final size:91
Alignment explanation
Indices: 48283935--48284213 Score: 436
Period size: 92 Copynumber: 3.1 Consensus size: 91
48283925 GTTGGATAAC
*
48283935 GAAGCTTCAAATGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAACGTACCTTTATC
1 GAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAACG-ACCTTTATC
*
48284000 T-T-TAAAGTTATAGTAAGAGCAAGAT
65 TCTCTGAAGTTATAGTAAGAGCAAGAT
48284025 GAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAACGATCCTTTATC
1 GAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAACGA-CCTTTATC
48284090 TCTCTGAAGTTATAGTAAGAGCAAGAT
65 TCTCTGAAGTTATAGTAAGAGCAAGAT
* ** * *
48284117 GAAGCTTCAAACGTCAATTCTTATCCTCTTAAAGTTATAGTAAAGCCGGATAACAAATCTTTATC
1 GAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAAC-GACCTTTATC
* *
48284182 TCTCTGAAGTTGTAATAAGAGCAAGAT
65 TCTCTGAAGTTATAGTAAGAGCAAGAT
48284209 GAAGC
1 GAAGC
48284214 CTAGACGTCA
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
89 1 0.01
90 63 0.36
91 1 0.01
92 110 0.62
93 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (91 bp):
GAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAACGACCTTTATCT
CTCTGAAGTTATAGTAAGAGCAAGAT
Found at i:48284125 original size:236 final size:236
Alignment explanation
Indices: 48283712--48284170 Score: 753
Period size: 236 Copynumber: 1.9 Consensus size: 236
48283702 GCTTTAAACA
*
48283712 TCAATTCTTATCCTCTCAAAGTTATAGAAGTTGGATAACGAACCTTTATATCTCTGAAGTTATAG
1 TCAATTCTTATCCTCTCAAAGTTATAGAAGTTGGATAACGAACCTTTATATCTCTAAAGTTATAG
*
48283777 TAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAATAAAGTTGGATAG
66 TAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAATAAAGTTGGATAA
*
48283842 TGAATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCATCC
131 CGAATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCATCC
* **
48283907 TCTTGAAGTTATAGTAAAGTTGGATAACGAAGCTTCAAATG
196 TCTTAAAGTTATAGTAAAGCCGGATAACGAAGCTTCAAATG
** * *
48283948 TCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGATAACGTACC-TT-TATCTTTAAAGTTAT
1 TCAATTCTTATCCTCTCAAAGTTATAG--AAGTTGGATAACGAACCTTTATATCTCTAAAGTTAT
* *
48284011 AGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAGTAAAGTTGGAT
64 AGTAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAATAAAGTTGGAT
*
48284076 AACG-ATCCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTA
129 AACGAAT-CTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCA
48284140 TCCTCTTAAAGTTATAGTAAAGCCGGATAAC
193 TCCTCTTAAAGTTATAGTAAAGCCGGATAAC
48284171 AAATCTTTAT
Statistics
Matches: 207, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
235 2 0.01
236 187 0.90
237 2 0.01
238 16 0.08
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (236 bp):
TCAATTCTTATCCTCTCAAAGTTATAGAAGTTGGATAACGAACCTTTATATCTCTAAAGTTATAG
TAAGAGCAAGATAAAGCTTCAAACGTCAATTCTTATCCTCTTGAAGTTATAATAAAGTTGGATAA
CGAATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTCATCC
TCTTAAAGTTATAGTAAAGCCGGATAACGAAGCTTCAAATG
Found at i:48284481 original size:11 final size:11
Alignment explanation
Indices: 48284467--48284572 Score: 65
Period size: 11 Copynumber: 9.1 Consensus size: 11
48284457 ACCAAACCAT
*
48284467 TTTAAATTTAT
1 TTTAAATTTAA
*
48284478 TTTAAAATTAAA
1 TTT-AAATTTAA
*
48284490 TTT-ATTTTAAA
1 TTTAAATTT-AA
48284501 TTTAAATTTATTCAA
1 TTTAAA--T-TT-AA
48284516 TTTAAATTTAA
1 TTTAAATTTAA
*
48284527 TTTAAATTTGGA
1 TTTAAATTT-AA
48284539 TTT-AATTTAAA
1 TTTAAATTT-AA
*
48284550 TTTAAAATT-A
1 TTTAAATTTAA
48284560 TTATAAATTTAA
1 TT-TAAATTTAA
48284572 T
1 T
48284573 AAAATATAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
10 6 0.08
11 34 0.46
12 22 0.30
13 1 0.01
14 1 0.01
15 10 0.14
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:48284490 original size:17 final size:17
Alignment explanation
Indices: 48284467--48284571 Score: 124
Period size: 17 Copynumber: 6.3 Consensus size: 17
48284457 ACCAAACCAT
48284467 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
48284484 ATTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
48284501 TTTAAATTTA--TTCAA
1 TTTAAATTTATTTTAAA
*
48284516 TTTAAATTTAATTTAAA
1 TTTAAATTTATTTTAAA
** *
48284533 TTTGGATTTAATTTAAA
1 TTTAAATTTATTTTAAA
* *
48284550 TTTAAAATTATTATAAA
1 TTTAAATTTATTTTAAA
48284567 TTTAA
1 TTTAA
48284572 TAAAATATAA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
15 14 0.19
17 61 0.81
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:48284504 original size:6 final size:6
Alignment explanation
Indices: 48284467--48284555 Score: 78
Period size: 6 Copynumber: 15.0 Consensus size: 6
48284457 ACCAAACCAT
* * *
48284467 TTTAAA TTT-AT TTTAAA ATTAAA TTT-AT TTTAAA TTTAAA TTTATTCAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA---AA
**
48284516 TTTAAA TTT-AA TTTAAA TTTGGA TTT-AA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
48284556 ATTATTATAA
Statistics
Matches: 67, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
5 17 0.25
6 44 0.66
9 6 0.09
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:48284542 original size:49 final size:49
Alignment explanation
Indices: 48284467--48284561 Score: 136
Period size: 49 Copynumber: 1.9 Consensus size: 49
48284457 ACCAAACCAT
* * *
48284467 TTTAAATTTATTTTAAAATTAAATTTATTTTAAATTTAAATTTATTCAA
1 TTTAAATTTAATTTAAAATTAAATTTAATTTAAATTTAAAATTATTCAA
* **
48284516 TTTAAATTTAATTTAAATTTGGATTTAATTTAAATTTAAAATTATT
1 TTTAAATTTAATTTAAAATTAAATTTAATTTAAATTTAAAATTATT
48284562 ATAAATTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (49 bp):
TTTAAATTTAATTTAAAATTAAATTTAATTTAAATTTAAAATTATTCAA
Found at i:48284888 original size:60 final size:59
Alignment explanation
Indices: 48284824--48284986 Score: 186
Period size: 59 Copynumber: 2.8 Consensus size: 59
48284814 TTTAACCAAT
* * *
48284824 AAACTTTTTCAAAATTATATTTTGACCCTAAAACTTTCTAAAAATTATACATTAACCCCA
1 AAACTTTTTAAAAATTACATTTTAACCCTAAAACTTT-TAAAAATTATACATTAACCCCA
* ** * *
48284884 AAACTTTTTAAAAATTACATTTTAACCCTAAAACTTTTTAAAATTATATTTTAACCTCG
1 AAACTTTTTAAAAATTACATTTTAACCCTAAAACTTTTAAAAATTATACATTAACCCCA
* * * *
48284943 AAACTTTTTGAAAATTACCA-TTTCACCC-CAAACTTTCAAAAATT
1 AAACTTTTTAAAAATTA-CATTTTAACCCTAAAACTTTTAAAAATT
48284987 CCATTTTGAA
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
58 13 0.15
59 40 0.45
60 36 0.40
ACGTcount: A:0.41, C:0.19, G:0.02, T:0.38
Consensus pattern (59 bp):
AAACTTTTTAAAAATTACATTTTAACCCTAAAACTTTTAAAAATTATACATTAACCCCA
Found at i:48284946 original size:29 final size:29
Alignment explanation
Indices: 48284795--48284959 Score: 172
Period size: 30 Copynumber: 5.6 Consensus size: 29
48284785 TGCCACCAAT
* * *
48284795 AAAC-TTTTCAAAATTACATTTTAACCAA
1 AAACTTTTTAAAAATTATATTTTAACCCA
* *
48284823 TAAACTTTTTCAAAATTATATTTTGACCCTA
1 -AAACTTTTTAAAAATTATATTTTAACCC-A
* **
48284854 AAACTTTCTAAAAATTATACATTAACCCCA
1 AAACTTTTTAAAAATTATATTTTAA-CCCA
*
48284884 AAACTTTTTAAAAATTACATTTTAACCCTA
1 AAACTTTTTAAAAATTATATTTTAACCC-A
*
48284914 AAACTTTTT-AAAATTATATTTTAACCTCG
1 AAACTTTTTAAAAATTATATTTTAACC-CA
*
48284943 AAACTTTTTGAAAATTA
1 AAACTTTTTAAAAATTA
48284960 CCATTTCACC
Statistics
Matches: 116, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.28
30 80 0.69
31 4 0.03
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.39
Consensus pattern (29 bp):
AAACTTTTTAAAAATTATATTTTAACCCA
Found at i:48284975 original size:29 final size:28
Alignment explanation
Indices: 48284795--48284998 Score: 149
Period size: 30 Copynumber: 6.9 Consensus size: 28
48284785 TGCCACCAAT
* **
48284795 AAACTTTTCAAAATTACATTTTAACCAAT
1 AAACTTTTTAAAATTACATTTTAACC-CC
* * *
48284824 AAACTTTTTCAAAATTATATTTTGACCCTA
1 AAACTTTTT-AAAATTACATTTTAACCC-C
* * **
48284854 AAACTTTCTAAAAATTATACATTAACCCC
1 AAACTTT-TTAAAATTACATTTTAACCCC
*
48284883 AAAACTTTTTAAAAATTACATTTTAACCCTA
1 -AAACTTTTT-AAAATTACATTTTAACCC-C
* *
48284914 AAACTTTTTAAAATTATATTTTAACCTCG
1 AAACTTTTTAAAATTACATTTTAACC-CC
*
48284943 AAACTTTTTGAAAATTACCA-TTTCACCCC
1 AAACTTTTT-AAAATTA-CATTTTAACCCC
** *
48284972 AAACTTTCAAAAATTCCATTTTGAACC
1 AAACTTTTTAAAATTACATTTT-AACC
48284999 TCAATTTCAC
Statistics
Matches: 140, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
27 2 0.01
28 9 0.06
29 45 0.32
30 82 0.59
31 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.38
Consensus pattern (28 bp):
AAACTTTTTAAAATTACATTTTAACCCC
Found at i:48284999 original size:59 final size:59
Alignment explanation
Indices: 48284795--48285000 Score: 193
Period size: 60 Copynumber: 3.5 Consensus size: 59
48284785 TGCCACCAAT
*** * * *
48284795 AAACTTTTC-AAAATTACATTTTAACCAATAAACTTTTTCAAAATTATATTTTGACCCTA
1 AAAC-TTTCAAAAATTACATTTTAACCTCGAAACTTTTTAAAAATTACATTTTAACCCTA
* ** * *
48284854 AAACTTTCTAAAAATTATACATTAACCCCAAAACTTTTTAAAAATTACATTTTAACCCTA
1 AAACTTTC-AAAAATTACATTTTAACCTCGAAACTTTTTAAAAATTACATTTTAACCCTA
** * * * *
48284914 AAACTTTTTAAAATTATATTTTAACCTCGAAACTTTTTGAAAATTACCA-TTTCACCC-C
1 AAACTTTCAAAAATTACATTTTAACCTCGAAACTTTTTAAAAATTA-CATTTTAACCCTA
*
48284972 AAACTTTCAAAAATTCCATTTTGAACCTC
1 AAACTTTCAAAAATTACATTTT-AACCTC
48285001 AATTTCACCA
Statistics
Matches: 121, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
58 22 0.18
59 49 0.40
60 50 0.41
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (59 bp):
AAACTTTCAAAAATTACATTTTAACCTCGAAACTTTTTAAAAATTACATTTTAACCCTA
Found at i:48285015 original size:58 final size:58
Alignment explanation
Indices: 48284953--48285323 Score: 347
Period size: 58 Copynumber: 6.4 Consensus size: 58
48284943 AAACTTTTTG
* * *
48284953 AAAATTACCATTTCA-CCCCAAACTTTCAAAAATTCCA-TTTTGAACCTCAATTTCACC
1 AAAATTACCATTTTACCCCCAAACTTTCTAAAATTCCATTTTTG-ACCCCAATTTCACC
** * * *
48285010 AAAAATTA-CATTTTTACCCCCAAGTTTTCCATAATTCCATTTTTGACCCCAATTTTACC
1 -AAAATTACCA-TTTTACCCCCAAACTTTCTAAAATTCCATTTTTGACCCCAATTTCACC
* ** * * *
48285069 AAAATTACCATTTTATCCTTAAACTTTCTAAAATTTCATTTTTGCCCCCGATTTCACC
1 AAAATTACCATTTTACCCCCAAACTTTCTAAAATTCCATTTTTGACCCCAATTTCACC
** * *
48285127 AAAATTACCATTTTACCCCTCAATTTTTCTAAAATTTCATTTTTG-CTCCCGATTTCACC
1 AAAATTACCATTTTACCCC-CAAACTTTCTAAAATTCCATTTTTGAC-CCCAATTTCACC
* * * * * * *
48285186 AAAATTGCCATTTTTCCCTCAAACTTTCTAAAATTCCACTTTTAACCCCGATTTTACC
1 AAAATTACCATTTTACCCCCAAACTTTCTAAAATTCCATTTTTGACCCCAATTTCACC
* * * * * *
48285244 AAAAATTACCATTTTACCTCCGAACTTTCCACAATCCCGTTTTTGA-CCCAATTTCAACC
1 -AAAATTACCATTTTACCCCCAAACTTTCTAAAATTCCATTTTTGACCCCAATTTC-ACC
* *
48285303 AGAATTACCATTTTGCCCCCA
1 AAAATTACCATTTTACCCCCA
48285324 GATATCCAAA
Statistics
Matches: 255, Mismatches: 49, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
57 2 0.01
58 128 0.50
59 120 0.47
60 5 0.02
ACGTcount: A:0.30, C:0.29, G:0.04, T:0.37
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCCAAACTTTCTAAAATTCCATTTTTGACCCCAATTTCACC
Found at i:48285050 original size:29 final size:29
Alignment explanation
Indices: 48284981--48285258 Score: 130
Period size: 29 Copynumber: 9.4 Consensus size: 29
48284971 CAAACTTTCA
* *
48284981 AAAATTCCA-TTTTGAACCTCAATTTCACC
1 AAAATTCCATTTTTG-ACCCCAATTTTACC
*
48285010 AAAAATTACATTTTT-ACCCCCAAGTTTT-CC
1 -AAAATTCCATTTTTGA-CCCCAA-TTTTACC
*
48285040 ATAATTCCATTTTTGACCCCAATTTTACC
1 AAAATTCCATTTTTGACCCCAATTTTACC
** * *
48285069 AAAATTACCA-TTTT-ATCCTTAAACTTT-CT
1 AAAATT-CCATTTTTGA-CC-CCAATTTTACC
* * * *
48285098 AAAATTTCATTTTTGCCCCCGATTTCACC
1 AAAATTCCATTTTTGACCCCAATTTTACC
* *
48285127 AAAATTACCA-TTTT-ACCCCTCAATTTTTCT
1 AAAATT-CCATTTTTGA-CCC-CAATTTTACC
* * *
48285157 AAAATTTCATTTTTG-CTCCCGATTTCACC
1 AAAATTCCATTTTTGAC-CCCAATTTTACC
* *
48285186 AAAATTGCCATTTTT--CCCTCAAACTTT-CT
1 AAAATT-CCATTTTTGACCC-C-AATTTTACC
* * *
48285215 AAAATTCCACTTTTAACCCCGATTTTACC
1 AAAATTCCATTTTTGACCCCAATTTTACC
48285244 AAAAATTACCATTTT
1 -AAAATT-CCATTTT
48285259 ACCTCCGAAC
Statistics
Matches: 184, Mismatches: 39, Indels: 49
0.68 0.14 0.18
Matches are distributed among these distances:
28 23 0.12
29 85 0.46
30 63 0.34
31 13 0.07
ACGTcount: A:0.31, C:0.27, G:0.03, T:0.40
Consensus pattern (29 bp):
AAAATTCCATTTTTGACCCCAATTTTACC
Found at i:48285093 original size:117 final size:117
Alignment explanation
Indices: 48284953--48285316 Score: 386
Period size: 117 Copynumber: 3.1 Consensus size: 117
48284943 AAACTTTTTG
* * * * *
48284953 AAAATTACCATTTCA-CCCCAAACTTTCAAAAATTCCA-TTTTGAACCTCAATTTCACCAAAAAT
1 AAAATTACCATTTTATCCTCAAACTTTCTAAAATTCCACTTTTGAACCCCGATTTCACCAAAAAT
* *
48285016 TA-CATTTTTACCCCCAAGTTTTCCATAATTCCATTTTTGACCCCAATTTTACC
66 TACCA-TTTTACCCCCAA-TTTTCCAAAATTCCATTTTTGACCCCAATTTAACC
* * * *
48285069 AAAATTACCATTTTATCCTTAAACTTTCTAAAATTTCATTTTTG-CCCCCGATTTCACC-AAAAT
1 AAAATTACCATTTTATCCTCAAACTTTCTAAAATTCCACTTTTGAACCCCGATTTCACCAAAAAT
* * * *
48285132 TACCATTTTACCCCTCAATTTTTCTAAAATTTCATTTTTG-CTCCCGATTTCACC
66 TACCATTTTACCCC-CAA-TTTTCCAAAATTCCATTTTTGAC-CCCAATTTAACC
* *
48285186 AAAATTGCCATTTT-TCCCTCAAACTTTCTAAAATTCCACTTTT-AACCCCGATTTTACCAAAAA
1 AAAATTACCATTTTAT-CCTCAAACTTTCTAAAATTCCACTTTTGAACCCCGATTTCACCAAAAA
* * * * *
48285249 TTACCATTTTACCTCCGAACTTTCCACAATCCCGTTTTTGA-CCCAATTTCAACC
65 TTACCATTTTACC-CCCAATTTTCCAAAATTCCATTTTTGACCCCAATTT-AACC
*
48285303 AGAATTACCATTTT
1 AAAATTACCATTTT
48285317 GCCCCCAGAT
Statistics
Matches: 206, Mismatches: 31, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
116 39 0.19
117 141 0.68
118 24 0.12
119 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.04, T:0.38
Consensus pattern (117 bp):
AAAATTACCATTTTATCCTCAAACTTTCTAAAATTCCACTTTTGAACCCCGATTTCACCAAAAAT
TACCATTTTACCCCCAATTTTCCAAAATTCCATTTTTGACCCCAATTTAACC
Found at i:48287343 original size:23 final size:23
Alignment explanation
Indices: 48287281--48287344 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
48287271 TAATATTTAT
* *
48287281 GAACATGTTCATTTAACA-TAATC
1 GAACATGTTCA-TAAACATTAAAC
**
48287304 GAACATGTTCACGAACATTAAAC
1 GAACATGTTCATAAACATTAAAC
48287327 GAACATGTTCATAAACAT
1 GAACATGTTCATAAACAT
48287345 ATAATTGAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 4 0.11
23 31 0.89
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (23 bp):
GAACATGTTCATAAACATTAAAC
Found at i:48287367 original size:24 final size:24
Alignment explanation
Indices: 48287298--48287367 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 24
48287288 TTCATTTAAC
48287298 ATAATCGAACATGTTCACGAACAT
1 ATAATCGAACATGTTCACGAACAT
* **
48287322 -TAAACGAACATGTTCATAAACAT
1 ATAATCGAACATGTTCACGAACAT
* *
48287345 ATAATTGAATATGTTCACGAACA
1 ATAATCGAACATGTTCACGAACA
48287368 ATATTAATAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 20 0.54
24 17 0.46
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.27
Consensus pattern (24 bp):
ATAATCGAACATGTTCACGAACAT
Found at i:48293692 original size:21 final size:21
Alignment explanation
Indices: 48293666--48293710 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
48293656 GTGATAACTT
*
48293666 TTTTTAATTATGTTATTTAAA
1 TTTTTAAATATGTTATTTAAA
*
48293687 TTTTTAAATATGTTATTTATA
1 TTTTTAAATATGTTATTTAAA
48293708 TTT
1 TTT
48293711 GTATTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTTAAATATGTTATTTAAA
Found at i:48294023 original size:29 final size:31
Alignment explanation
Indices: 48293981--48294042 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 31
48293971 TAGTAAAGAT
*
48293981 AAAATTATACTTTAACCCGCTAAAAA-TATA
1 AAAATTATAATTTAACCCGCTAAAAATTATA
* **
48294011 AAAATT-TAATTTAATCCTTTAAAAATTATA
1 AAAATTATAATTTAACCCGCTAAAAATTATA
48294041 AA
1 AA
48294043 GATATAGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.35
Consensus pattern (31 bp):
AAAATTATAATTTAACCCGCTAAAAATTATA
Found at i:48295207 original size:89 final size:89
Alignment explanation
Indices: 48295056--48295234 Score: 304
Period size: 89 Copynumber: 2.0 Consensus size: 89
48295046 GCATGTCTTC
** * *
48295056 TGGTTTAATTACAAATATTCAATATTGTTGAAAATCAGTATTGTGTTCAATTACTTAGAATGTTT
1 TGGTTTAATTACAAATATTCAATATTAATGAAAATCAATAATGTGTTCAATTACTTAGAATGTTT
48295121 GCATTATCAATTAGAATGGTTAAA
66 GCATTATCAATTAGAATGGTTAAA
*
48295145 TGGTTTAATTACAAATATTCAATATTAATGAAAATCAATAATGTGTTCAGTTACTTAGAATGTTT
1 TGGTTTAATTACAAATATTCAATATTAATGAAAATCAATAATGTGTTCAATTACTTAGAATGTTT
*
48295210 GCATTGTCAATTAGAATGGTTAAA
66 GCATTATCAATTAGAATGGTTAAA
48295234 T
1 T
48295235 ATGTAATTGT
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.41
Consensus pattern (89 bp):
TGGTTTAATTACAAATATTCAATATTAATGAAAATCAATAATGTGTTCAATTACTTAGAATGTTT
GCATTATCAATTAGAATGGTTAAA
Found at i:48300060 original size:31 final size:30
Alignment explanation
Indices: 48300022--48300081 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
48300012 GGTGACTTAA
* *
48300022 AAAACTTTTGAATAGTTTAATGACTTAAATG
1 AAAACTTTCGAATAATTTAATGAC-TAAATG
48300053 AAAACTTTCGAATAATTTAATGACTAAAT
1 AAAACTTTCGAATAATTTAATGACTAAAT
48300082 TGTAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (30 bp):
AAAACTTTCGAATAATTTAATGACTAAATG
Found at i:48300622 original size:17 final size:18
Alignment explanation
Indices: 48300581--48300619 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
48300571 GAAAGCAACT
48300581 CAAAG-ATAAAAAAGTAA
1 CAAAGAATAAAAAAGTAA
*
48300598 CGAAAGAATAAAAAAGTCA
1 C-AAAGAATAAAAAAGTAA
48300617 CAA
1 CAA
48300620 GAAAACAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 6 0.32
19 12 0.63
ACGTcount: A:0.67, C:0.10, G:0.13, T:0.10
Consensus pattern (18 bp):
CAAAGAATAAAAAAGTAA
Found at i:48303239 original size:31 final size:30
Alignment explanation
Indices: 48303144--48303245 Score: 136
Period size: 28 Copynumber: 3.4 Consensus size: 30
48303134 CAAATGATTT
*
48303144 TAAAATTATTAAAGTTATTTTTTTAAAATA
1 TAAAATTATTAAAATTATTTTTTTAAAATA
** *
48303174 TAAAAAAATTTAAATTA--TTTTTAAAATA
1 TAAAATTATTAAAATTATTTTTTTAAAATA
*
48303202 TAAAATTATTAAAATTATTTTTTTGAAATAA
1 TAAAATTATTAAAATTATTTTTTTAAAAT-A
48303233 TAAAATTATTAAA
1 TAAAATTATTAAA
48303246 TAATTTTAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 25 0.41
30 22 0.36
31 14 0.23
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (30 bp):
TAAAATTATTAAAATTATTTTTTTAAAATA
Found at i:48303252 original size:30 final size:29
Alignment explanation
Indices: 48303144--48303252 Score: 132
Period size: 30 Copynumber: 3.7 Consensus size: 29
48303134 CAAATGATTT
48303144 TAAAATTATTAAAGTTATTTTTTTAAAATA
1 TAAAATTATTAAA-TTATTTTTTTAAAATA
**
48303174 TAAAAAAATTTAAATTA--TTTTTAAAATA
1 TAAAATTA-TTAAATTATTTTTTTAAAATA
*
48303202 TAAAATTATTAAAATTATTTTTTTGAAATAA
1 TAAAATTATT-AAATTATTTTTTTAAAAT-A
*
48303233 TAAAATTATTAAATAATTTT
1 TAAAATTATTAAATTATTTT
48303253 AATTTCCAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
27 2 0.03
28 23 0.34
30 27 0.40
31 16 0.24
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (29 bp):
TAAAATTATTAAATTATTTTTTTAAAATA
Found at i:48315214 original size:9 final size:9
Alignment explanation
Indices: 48315200--48315228 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
48315190 ACTTCAAAAA
48315200 AATAATTTT
1 AATAATTTT
48315209 AATAATTTT
1 AATAATTTT
48315218 AATAATTTT
1 AATAATTTT
48315227 AA
1 AA
48315229 AATCATTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
AATAATTTT
Found at i:48318369 original size:31 final size:31
Alignment explanation
Indices: 48318334--48318404 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
48318324 AAAAATTTTG
*
48318334 TGACTTAAATAAAAACTTTTGAATAATCCAA
1 TGACTTAAATAAAAACTTTCGAATAATCCAA
* * * *
48318365 TGACTTAAGTGAAAACTTTCGAATAATTCAG
1 TGACTTAAATAAAAACTTTCGAATAATCCAA
48318396 TGAC-TAAAT
1 TGACTTAAAT
48318405 TATAACTTCT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 4 0.12
31 30 0.88
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCGAATAATCCAA
Found at i:48320719 original size:97 final size:97
Alignment explanation
Indices: 48320544--48320719 Score: 230
Period size: 97 Copynumber: 1.8 Consensus size: 97
48320534 TATTTTGGAA
* * * *
48320544 AAGGATATTCGATTATCTCGATTTGAAGAAAAGTCGCACCTAGTAAGTTAAGCTGCGAATTTTCA
1 AAGGATATTCGATTATCTAGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGCTACAAATTTTCA
*
48320609 GAATCGAAGATAAAGAAACATTGCCTTGATTT
66 AAATCGAAGATAAAGAAACATTGCCTTGATTT
* * * * *
48320641 AAGGGTATTCGATTATTTAGATTTGAGGAAAAATTGTACCTAGTAAGTTAAAGC-ACAAATTTTC
1 AAGGATATTCGATTATCTAGATTTGAAGAAAAATCGCACCTAGTAAGTT-AAGCTACAAATTTTC
48320705 AAAACTCGAA-ATAAA
65 AAAA-TCGAAGATAAA
48320720 AGAATATTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
97 58 0.87
98 9 0.13
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (97 bp):
AAGGATATTCGATTATCTAGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGCTACAAATTTTCA
AAATCGAAGATAAAGAAACATTGCCTTGATTT
Found at i:48320985 original size:28 final size:28
Alignment explanation
Indices: 48320954--48321041 Score: 140
Period size: 28 Copynumber: 3.1 Consensus size: 28
48320944 TAAAAATGAG
* * *
48320954 TTTTGGATACTCGGGGGGAAAACGGCAA
1 TTTTGGACACTCGGGGGCAAAATGGCAA
*
48320982 TTTTGGACACTCGGGGGCAAAATGGTAA
1 TTTTGGACACTCGGGGGCAAAATGGCAA
48321010 TTTTGGACACTCGGGGGCAAAATGGCAA
1 TTTTGGACACTCGGGGGCAAAATGGCAA
48321038 TTTT
1 TTTT
48321042 TGGAAGGTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (28 bp):
TTTTGGACACTCGGGGGCAAAATGGCAA
Found at i:48321043 original size:29 final size:29
Alignment explanation
Indices: 48320954--48321103 Score: 139
Period size: 28 Copynumber: 5.2 Consensus size: 29
48320944 TAAAAATGAG
* * *
48320954 TTTTGGATACTCGGGGGGAAAACGGCAA-
1 TTTTGGACACTCGGGGGCAAAATGGCAAT
*
48320982 TTTTGGACACTCGGGGGCAAAATGGTAA-
1 TTTTGGACACTCGGGGGCAAAATGGCAAT
48321010 TTTTGGACACTCGGGGGCAAAATGGCAAT
1 TTTTGGACACTCGGGGGCAAAATGGCAAT
* * *
48321039 TTTTGGA-AGGTTCGGAGCCAAAATGG-AAT
1 TTTTGGACA--CTCGGGGGCAAAATGGCAAT
* * * *
48321068 TTTTAGACA-TCCAGGGGTAAAATGGTAAT
1 TTTTGGACACT-CGGGGGCAAAATGGCAAT
48321097 TTTTGGA
1 TTTTGGA
48321104 AGGTTCAGGA
Statistics
Matches: 102, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.01
28 62 0.61
29 25 0.25
30 14 0.14
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (29 bp):
TTTTGGACACTCGGGGGCAAAATGGCAAT
Found at i:48321090 original size:58 final size:57
Alignment explanation
Indices: 48321023--48321304 Score: 264
Period size: 59 Copynumber: 4.9 Consensus size: 57
48321013 TGGACACTCG
* * *
48321023 GGGGCAAAATGGCAATTTTTGGAAGGTTCGGAGCCAAAATGGAATTTTTAGACATCCA
1 GGGGTAAAATGGTAATTTTTGGAAGGTTCGG-GCAAAAATGGAATTTTTAGACATCCA
* * * **
48321081 GGGGTAAAATGGTAATTTTTGGAAGGTTCAGGATCAAAAATGGAGTTTTTTGACATCTG
1 GGGGTAAAATGGTAATTTTTGGAAGGTTC-GG-GCAAAAATGGAATTTTTAGACATCCA
* ***
48321140 GGGGTAAAATGGTAATTTTTGGAAGGTTCGGGTCAAAAATAGAATTTTTAGACATTTG
1 GGGGTAAAATGGTAATTTTTGGAAGGTTCGGG-CAAAAATGGAATTTTTAGACATCCA
* * * * * * *
48321198 GGGGT-AAATGGTAATTTTTAGAAGTTTTGGTCAAAAATGGAATTTTTGGAAAATTCA
1 GGGGTAAAATGGTAATTTTTGGAAGGTTCGGGCAAAAATGGAATTTTTAG-ACATCCA
* * **
48321255 GGGTTAAAAATGG-AA-TTTTGGAAAGTTCGAGGGCAAAAATATAATTTTTA
1 GGGGT-AAAATGGTAATTTTTGGAAGGTTC--GGGCAAAAATGGAATTTTTA
48321305 AAAAGTTTAG
Statistics
Matches: 186, Mismatches: 31, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
56 16 0.09
57 39 0.21
58 57 0.31
59 74 0.40
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.33
Consensus pattern (57 bp):
GGGGTAAAATGGTAATTTTTGGAAGGTTCGGGCAAAAATGGAATTTTTAGACATCCA
Found at i:48321148 original size:59 final size:58
Alignment explanation
Indices: 48321000--48321244 Score: 300
Period size: 58 Copynumber: 4.2 Consensus size: 58
48320990 ACTCGGGGGC
* * * * *
48321000 AAAATGGTAA-TTTTGGACA-CTCGGGGGCAAAATGGCAATTTTTGGAAGGTTCGGAGCC
1 AAAATGG-AATTTTTAGACATCT-GGGGGTAAAATGGTAATTTTTGGAAGGTTCGGATCA
**
48321058 AAAATGGAATTTTTAGACATCCAGGGGTAAAATGGTAATTTTTGGAAGGTTCAGGATCA
1 AAAATGGAATTTTTAGACATCTGGGGGTAAAATGGTAATTTTTGGAAGGTTC-GGATCA
* * *
48321117 AAAATGGAGTTTTTTGACATCTGGGGGTAAAATGGTAATTTTTGGAAGGTTCGGGTCA
1 AAAATGGAATTTTTAGACATCTGGGGGTAAAATGGTAATTTTTGGAAGGTTCGGATCA
* * * * *
48321175 AAAATAGAATTTTTAGACATTTGGGGGT-AAATGGTAATTTTTAGAAGTTTTGG-TCA
1 AAAATGGAATTTTTAGACATCTGGGGGTAAAATGGTAATTTTTGGAAGGTTCGGATCA
48321231 AAAATGGAATTTTT
1 AAAATGGAATTTTT
48321245 GGAAAATTCA
Statistics
Matches: 164, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
56 16 0.10
57 24 0.15
58 71 0.43
59 53 0.32
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.33
Consensus pattern (58 bp):
AAAATGGAATTTTTAGACATCTGGGGGTAAAATGGTAATTTTTGGAAGGTTCGGATCA
Found at i:48321158 original size:28 final size:29
Alignment explanation
Indices: 48321058--48321219 Score: 86
Period size: 28 Copynumber: 5.6 Consensus size: 29
48321048 GTTCGGAGCC
**
48321058 AAAATGG-AATTTTTAGACATCCAGGGGT
1 AAAATGGTAATTTTTAGACATCTGGGGGT
* ** *
48321086 AAAATGGTAATTTTTGGA-AGGT-TCAGGAT
1 AAAATGGTAATTTTTAGACA--TCTGGGGGT
* *
48321115 CAAAAATGG-AGTTTTTTGACATCTGGGGGT
1 --AAAATGGTAATTTTTAGACATCTGGGGGT
* ** **
48321145 AAAATGGTAATTTTTGGA-AGGTTCGGGT
1 AAAATGGTAATTTTTAGACATCTGGGGGT
* *
48321173 CAAAAATAG-AATTTTTAGACATTTGGGGGT
1 --AAAATGGTAATTTTTAGACATCTGGGGGT
48321203 -AAATGGTAATTTTTAGA
1 AAAATGGTAATTTTTAGA
48321220 AGTTTTGGTC
Statistics
Matches: 99, Mismatches: 23, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
27 5 0.05
28 31 0.31
29 30 0.30
30 25 0.25
31 8 0.08
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.34
Consensus pattern (29 bp):
AAAATGGTAATTTTTAGACATCTGGGGGT
Found at i:48321391 original size:29 final size:30
Alignment explanation
Indices: 48321145--48321458 Score: 206
Period size: 29 Copynumber: 10.8 Consensus size: 30
48321135 ATCTGGGGGT
* * * *
48321145 AAAATGGTAATTTTT-GGAAGGTTCGGGTCA
1 AAAAT-GTAATTTTTAGAAAGTTTAGGGTTA
* * *
48321175 AAAATAG-AATTTTTAGACA-TTTGGGGGT-
1 AAAAT-GTAATTTTTAGAAAGTTTAGGGTTA
* *
48321203 -AAATGGTAATTTTTAG-AAGTTT-TGGTCA
1 AAAAT-GTAATTTTTAGAAAGTTTAGGGTTA
* * * *
48321231 AAAATGGAATTTTTGGAAAATTCAGGGTTA
1 AAAATGTAATTTTTAGAAAGTTTAGGGTTA
* * * *
48321261 AAAATGGAA-TTTTGGAAAGTTCGAGGG-CA
1 AAAATGTAATTTTTAGAAAGTT-TAGGGTTA
* * *
48321290 AAAATATAATTTTTAAAAAGTTTAGGGTCA
1 AAAATGTAATTTTTAGAAAGTTTAGGGTTA
* * * *
48321320 AAAATGGAA-TTTTGGAAAGTTT-GGGGTC
1 AAAATGTAATTTTTAGAAAGTTTAGGGTTA
* *
48321348 AAAATGTAACTTTTAGAAAGTTTAAGGTTA
1 AAAATGTAATTTTTAGAAAGTTTAGGGTTA
* *
48321378 AAAATGTAA-TTTTAAAAATTTTAGGGTT-
1 AAAATGTAATTTTTAGAAAGTTTAGGGTTA
* * *
48321406 AAAATGGAA-TTTTAGAAAATTTAGGGGTA
1 AAAATGTAATTTTTAGAAAGTTTAGGGTTA
*
48321435 AAAATGTAATTTTTAGACAGTTTA
1 AAAATGTAATTTTTAGAAAGTTTA
48321459 AGGACCTTTA
Statistics
Matches: 222, Mismatches: 48, Indels: 28
0.74 0.16 0.09
Matches are distributed among these distances:
27 8 0.04
28 56 0.25
29 90 0.41
30 68 0.31
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (30 bp):
AAAATGTAATTTTTAGAAAGTTTAGGGTTA
Found at i:48321457 original size:145 final size:143
Alignment explanation
Indices: 48321140--48321458 Score: 328
Period size: 145 Copynumber: 2.2 Consensus size: 143
48321130 TTGACATCTG
* * * *
48321140 GGGGT-AAAATGGTAATTTTTGGAAGGTTCGGGTCAAAAATAGAATTTTTAGACATTTGGGGGTA
1 GGGGTAAAAAT-GTAATTTTTAGAAGTTTAGGGTCAAAAATAGAATTTTTAGAAATTTGGGGGTA
* * *
48321204 AATGGTAATTTTTAGAAGTTTTGGTCAAAAATGGAATTTTTGGAAAATTCAGGGTTAAAAATGGA
65 AATGGTAACTTTTAGAAGTTTAGGTCAAAAATGGAATTTTTGAAAAATTCAGGGTTAAAAATGGA
* *
48321269 ATTTTGGAAAGTTC
130 ATTTTGAAAAGTTA
* * * * *
48321283 GAGGGCAAAAATATAATTTTTAAAAAGTTTAGGGTCAAAAATGGAA-TTTTGGAAAGTTT-GGGG
1 G-GGGTAAAAATGTAATTTTT-AGAAGTTTAGGGTCAAAAATAGAATTTTTAGAAA-TTTGGGGG
* * *
48321346 TCAAAAT-GTAACTTTTAGAAAGTTTAAGGTTAAAAATGTAA-TTTT-AAAAATTTTAGGGTT-A
63 T--AAATGGTAACTTTTAG-AAGTTT-AGGTCAAAAATGGAATTTTTGAAAAA-TTCAGGGTTAA
*
48321407 AAATGGAATTTTAGAAAATTTA
123 AAATGGAATTTT-GAAAAGTTA
48321429 GGGGTAAAAATGTAATTTTTAGACAGTTTA
1 GGGGTAAAAATGTAATTTTTAGA-AGTTTA
48321459 AGGACCTTTA
Statistics
Matches: 144, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
143 1 0.01
144 25 0.17
145 77 0.53
146 29 0.20
147 12 0.08
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.35
Consensus pattern (143 bp):
GGGGTAAAAATGTAATTTTTAGAAGTTTAGGGTCAAAAATAGAATTTTTAGAAATTTGGGGGTAA
ATGGTAACTTTTAGAAGTTTAGGTCAAAAATGGAATTTTTGAAAAATTCAGGGTTAAAAATGGAA
TTTTGAAAAGTTA
Found at i:48330128 original size:27 final size:27
Alignment explanation
Indices: 48330090--48330146 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
48330080 TTCATATTCG
48330090 TTTGTTTAATATTCACGAACATGTTCA
1 TTTGTTTAATATTCACGAACATGTTCA
48330117 TTTGTTTAATATTCACGAACATGTTCA
1 TTTGTTTAATATTCACGAACATGTTCA
48330144 TTT
1 TTT
48330147 AACATAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.14, G:0.11, T:0.47
Consensus pattern (27 bp):
TTTGTTTAATATTCACGAACATGTTCA
Found at i:48330195 original size:23 final size:23
Alignment explanation
Indices: 48330131--48330196 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 23
48330121 TTTAATATTC
*
48330131 ACGAACATGTTCATTTAACA-TAA
1 ACGAACATGTTCA-TAAACATTAA
** * *
48330154 TTGAACATGTTTACAAACATTAA
1 ACGAACATGTTCATAAACATTAA
*
48330177 ACGAACATGTTCATGAACAT
1 ACGAACATGTTCATAAACAT
48330197 ATAATTGAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
22 4 0.12
23 28 0.88
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (23 bp):
ACGAACATGTTCATAAACATTAA
Found at i:48332006 original size:20 final size:19
Alignment explanation
Indices: 48331973--48332014 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
48331963 AAACAACTCA
* *
48331973 ATAAAAAATTAAATATAAT
1 ATAAAAAATAAAATAAAAT
48331992 ATAAATAAATAAAATAAAAT
1 ATAAA-AAATAAAATAAAAT
48332012 ATA
1 ATA
48332015 TTACATCGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
ATAAAAAATAAAATAAAAT
Found at i:48335183 original size:245 final size:245
Alignment explanation
Indices: 48334736--48335188 Score: 594
Period size: 245 Copynumber: 1.8 Consensus size: 245
48334726 CATTATCTAA
* * * ** *
48334736 ATTCTTTACCATTTTAGGTGGAGATGAAAGGAAAGTATTTCCCCAAACATCAGGATGAAAATTGG
1 ATTCGTTACCATTTTAGATGGAGATGAAAAGAAAGTATCCCCCCAAACAGCA-GATGAAAATTGG
* * *
48334801 CTGAGGGACGATTCTGGTGGGACATGGATTCATTAGTTGAAAGAGGAAGCTTTGATGAAGATATT
65 CTAAGGGACGATTCTGGTGGGACATGGATCCATGAGTTGAAAGAGGAAGCTTTGATGAAGATATT
* *
48334866 TGAGAAGCCATTTCTTTAGCTAGTAAGTATGTCGGAAACACTACAAAAAGAGATGAATTGATGTG
130 TGAGAAGCCATTTCTTTAGCTAGCAAGTATGTCGGAAACACTACAAAAAGAGATGAAATGATGTG
48334931 AGCCAAAGAGCTCCTATGTTGTAGTATTTATAGAATTTTCTCGACATGGAG
195 AGCCAAAGAGCTCCTATGTTGTAGTATTTATAGAATTTTCTCGACATGGAG
*
48334982 ATTCGTTACCATTTTAGATGGAGATGAAAAGAAAGTGTCCCCCCAAAC-GCA-ATGAGAAAGTTG
1 ATTCGTTACCATTTTAGATGGAGATGAAAAGAAAGTATCCCCCCAAACAGCAGATGA-AAA-TTG
* * * *
48335045 GCTAAGGGACGATTGTGGTTGGACATGGATCCATGGGTTG-AAGAAGGAAGCTTTGATGAATATA
64 GCTAAGGGACGATTCTGGTGGGACATGGATCCATGAGTTGAAAG-AGGAAGCTTTGATGAAGATA
* * * * *
48335109 TTTGAGAAGACC-TTTGC-TTAGCTAGCAATTATGGT-GGAAACAGTACAATATGTGATGAAATG
128 TTTGAGAAG-CCATTT-CTTTAGCTAGCAAGTAT-GTCGGAAACACTACAAAAAGAGATGAAATG
* *
48335171 GTGTGGGCCAAAGAGCTC
190 ATGTGAGCCAAAGAGCTC
48335189 GTTTGTGGTA
Statistics
Matches: 178, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
243 4 0.02
244 6 0.03
245 121 0.68
246 47 0.26
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (245 bp):
ATTCGTTACCATTTTAGATGGAGATGAAAAGAAAGTATCCCCCCAAACAGCAGATGAAAATTGGC
TAAGGGACGATTCTGGTGGGACATGGATCCATGAGTTGAAAGAGGAAGCTTTGATGAAGATATTT
GAGAAGCCATTTCTTTAGCTAGCAAGTATGTCGGAAACACTACAAAAAGAGATGAAATGATGTGA
GCCAAAGAGCTCCTATGTTGTAGTATTTATAGAATTTTCTCGACATGGAG
Found at i:48337906 original size:29 final size:32
Alignment explanation
Indices: 48337874--48337954 Score: 91
Period size: 30 Copynumber: 2.7 Consensus size: 32
48337864 ACGGAGCTTC
* *
48337874 GAAGAATTT-AGGATGAAAA-CATAATTTTT-
1 GAAGAATTTGAGGATCAAAATCAAAATTTTTA
*
48337903 GAAGAATTTGAGGGTCAAAATCAAAATTTTTA
1 GAAGAATTTGAGGATCAAAATCAAAATTTTTA
*
48337935 GAA-AATTTGA-GATTAAAATC
1 GAAGAATTTGAGGATCAAAATC
48337955 GAACTTTTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 9 0.20
30 16 0.36
31 16 0.36
32 3 0.07
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (32 bp):
GAAGAATTTGAGGATCAAAATCAAAATTTTTA
Found at i:48338019 original size:27 final size:30
Alignment explanation
Indices: 48337959--48338024 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 30
48337949 AAAATCGAAC
*
48337959 TTTTGGAAATTTTGAGGTGGAAAATGTGAC
1 TTTTGGAAATTTTGAGGTGGAAAATGTGAA
48337989 TTTTGGAAA-TTTG-GG-GGAAAATAGT-AA
1 TTTTGGAAATTTTGAGGTGGAAAAT-GTGAA
48338016 TTTTGGAAA
1 TTTTGGAAA
48338025 AGTTTAGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
27 17 0.50
28 4 0.12
29 4 0.12
30 9 0.26
ACGTcount: A:0.33, C:0.02, G:0.29, T:0.36
Consensus pattern (30 bp):
TTTTGGAAATTTTGAGGTGGAAAATGTGAA
Found at i:48338077 original size:29 final size:29
Alignment explanation
Indices: 48338006--48338256 Score: 222
Period size: 30 Copynumber: 8.4 Consensus size: 29
48337996 AATTTGGGGG
* *
48338006 AAAATAGTAATTTTGGAAAAGTTTAGGGGTA
1 AAAATA-TAATTTTAGAAAAGTTTA-GGGTT
* * *
48338037 AAAATGTTATTTTGGAAAAGTTTAGGGTT
1 AAAATATAATTTTAGAAAAGTTTAGGGTT
* * *
48338066 AAAATGTAATTTTAGAAAAATTTAGGGTC
1 AAAATATAATTTTAGAAAAGTTTAGGGTT
* * *
48338095 AAAATGTAATTCTAGAAGAGTTTAGGGGTT
1 AAAATATAATTTTAGAAAAGTTTA-GGGTT
* *
48338125 AAAATATAATTTTA-AAAGAATTTAGGAGTC
1 AAAATATAATTTTAGAAA-AGTTTAGG-GTT
*
48338155 AAAATATAATTTTAGAGAAA-TTCAAGGGTT
1 AAAATATAATTTTAGA-AAAGTT-TAGGGTT
*
48338185 AAAATATAATTTT-GAAAAAGTTTGGGGTT
1 AAAATATAATTTTAG-AAAAGTTTAGGGTT
* * *
48338214 AAAATATAATTCTA-AAAGAGTTTGAAGATT
1 AAAATATAATTTTAGAAA-AGTTT-AGGGTT
48338244 AAAATATAATTTT
1 AAAATATAATTTT
48338257 TGTGAAGTTC
Statistics
Matches: 184, Mismatches: 25, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
28 3 0.02
29 80 0.43
30 89 0.48
31 10 0.05
32 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.35
Consensus pattern (29 bp):
AAAATATAATTTTAGAAAAGTTTAGGGTT
Found at i:48338084 original size:59 final size:59
Alignment explanation
Indices: 48338006--48338256 Score: 244
Period size: 59 Copynumber: 4.2 Consensus size: 59
48337996 AATTTGGGGG
* * * * *
48338006 AAAATAGTAATTTTGGAAAAGTTTAGGGGTAAAAATGTTATTTTGGAAAAGTTTAGGGTT
1 AAAATA-TAATTTTAGAAAAATTTAGGGGTCAAAATGTAATTTTAGAAAAGTTTAGGGTT
* * *
48338066 AAAATGTAATTTTAGAAAAATTTA-GGGTCAAAATGTAATTCTAGAAGAGTTTAGGGGTT
1 AAAATATAATTTTAGAAAAATTTAGGGGTCAAAATGTAATTTTAGAAAAGTTTA-GGGTT
* * *
48338125 AAAATATAATTTTA-AAAGAATTTAGGAGTCAAAATATAATTTTAGAGAAA-TTCAAGGGTT
1 AAAATATAATTTTAGAAA-AATTTAGGGGTCAAAATGTAATTTTAGA-AAAGTT-TAGGGTT
* * * * *
48338185 AAAATATAATTTT-GAAAAAGTTT-GGGGTTAAAATATAATTCTA-AAAGAGTTTGAAGATT
1 AAAATATAATTTTAGAAAAA-TTTAGGGGTCAAAATGTAATTTTAGAAA-AGTTT-AGGGTT
48338244 AAAATATAATTTT
1 AAAATATAATTTT
48338257 TGTGAAGTTC
Statistics
Matches: 161, Mismatches: 20, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
57 2 0.01
58 29 0.18
59 78 0.48
60 49 0.30
61 3 0.02
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.35
Consensus pattern (59 bp):
AAAATATAATTTTAGAAAAATTTAGGGGTCAAAATGTAATTTTAGAAAAGTTTAGGGTT
Found at i:48338212 original size:89 final size:89
Alignment explanation
Indices: 48338006--48338286 Score: 286
Period size: 89 Copynumber: 3.1 Consensus size: 89
48337996 AATTTGGGGG
* * * *
48338006 AAAATAGTAATTTTGGAAAAGTTTAGGGGTAAAAATGTTATTTTGGAAAAG-TTTAGG-GTTAAA
1 AAAATA-TAATTTTGAAAAAGTTTAGGGGTTAAAATATAATTTT--AAAAGATTTAGGAGTTAAA
* * *
48338069 ATGTAATTTTAGAAAAATT-TAGGGTC
63 ATATAATTTTAGAGAAATTCAAGGGTC
* * * *
48338095 AAAATGTAATTCT-AGAAGAGTTTAGGGGTTAAAATATAATTTTAAAAGAATTTAGGAGTCAAAA
1 AAAATATAATTTTGA-AAAAGTTTAGGGGTTAAAATATAATTTTAAAAG-ATTTAGGAGTTAAAA
*
48338159 TATAATTTTAGAGAAATTCAAGGGTT
64 TATAATTTTAGAGAAATTCAAGGGTC
* *
48338185 AAAATATAATTTTGAAAAAGTTT-GGGGTTAAAATATAATTCTAAAAGAGTTT-GAAGATTAAAA
1 AAAATATAATTTTGAAAAAGTTTAGGGGTTAAAATATAATTTTAAAAGA-TTTAGGAG-TTAAAA
* * * * *
48338248 TATAATTTTTGTGAAGTTCAAAGATC
64 TATAATTTTAGAGAAATTCAAGGGTC
48338274 AAAATATAATTTT
1 AAAATATAATTTT
48338287 ATGAAATTCG
Statistics
Matches: 160, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
86 5 0.03
88 40 0.25
89 91 0.57
90 23 0.14
91 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (89 bp):
AAAATATAATTTTGAAAAAGTTTAGGGGTTAAAATATAATTTTAAAAGATTTAGGAGTTAAAATA
TAATTTTAGAGAAATTCAAGGGTC
Found at i:48338276 original size:119 final size:118
Alignment explanation
Indices: 48338060--48338295 Score: 282
Period size: 119 Copynumber: 2.0 Consensus size: 118
48338050 GGAAAAGTTT
* * * * *
48338060 AGGGTTAAAATGTAATTTTAGAAAAATTTAGGGTCAAAATGTAATTCTAGAAGAGTTTAGGGGTT
1 AGGGTTAAAATATAATTTTAGAAAAATTTAGGGTCAAAATATAATTCTAAAAGAGTTTAGAGATT
* *
48338125 AAAATATAATTTTAAAAGAATTTAGGAGTCAAAATATAATTTTAGAGAAATTCA
66 AAAATATAATTTTAAAAGAATTAAAGAGTCAAAATATAATTTTA-AGAAATTCA
* *
48338179 AGGGTTAAAATATAATTTT-GAAAAAGTTTGGGGTTAAAATATAATTCTAAAAGAGTTT-GAAGA
1 AGGGTTAAAATATAATTTTAGAAAAA-TTTAGGGTCAAAATATAATTCTAAAAGAGTTTAG-AGA
*** *
48338242 TTAAAATATAATTTT-TGTGAAGTTCAAAGA-TCAAAATATAATTTTATGAAATTC
64 TTAAAATATAATTTTAAAAGAA-TT-AAAGAGTCAAAATATAATTTTAAGAAATTC
48338296 GATCCTTATG
Statistics
Matches: 100, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
118 17 0.17
119 80 0.80
120 3 0.03
ACGTcount: A:0.44, C:0.03, G:0.17, T:0.35
Consensus pattern (118 bp):
AGGGTTAAAATATAATTTTAGAAAAATTTAGGGTCAAAATATAATTCTAAAAGAGTTTAGAGATT
AAAATATAATTTTAAAAGAATTAAAGAGTCAAAATATAATTTTAAGAAATTCA
Found at i:48344872 original size:6 final size:6
Alignment explanation
Indices: 48344863--48344898 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
48344853 GAAAATTCCT
48344863 GGTGGG GGTGGG GGTGGG GGTGGG GGTGGG GGTGGG
1 GGTGGG GGTGGG GGTGGG GGTGGG GGTGGG GGTGGG
48344899 TGTTACAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.83, T:0.17
Consensus pattern (6 bp):
GGTGGG
Found at i:48346148 original size:7 final size:7
Alignment explanation
Indices: 48346100--48346155 Score: 53
Period size: 7 Copynumber: 8.0 Consensus size: 7
48346090 ATCTCAATCC
*
48346100 TCAATTC
1 TCAATTT
48346107 TCAATTT
1 TCAATTT
**
48346114 TCAATCC
1 TCAATTT
48346121 TCAATTT
1 TCAATTT
48346128 GT-AATTT
1 -TCAATTT
48346135 T-ATATTT
1 TCA-ATTT
48346142 TCAATTT
1 TCAATTT
48346149 TCAATTT
1 TCAATTT
48346156 AGCATTTTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
6 2 0.05
7 37 0.90
8 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.02, T:0.54
Consensus pattern (7 bp):
TCAATTT
Found at i:48356829 original size:5 final size:5
Alignment explanation
Indices: 48356821--48356849 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
48356811 CATAAAAACA
48356821 TAGAT TAGAT TAGAT TAGAT TAGAT TAGA
1 TAGAT TAGAT TAGAT TAGAT TAGAT TAGA
48356850 AAAGAAGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (5 bp):
TAGAT
Found at i:48357962 original size:26 final size:24
Alignment explanation
Indices: 48357916--48357965 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
48357906 AAAATTCAAA
*
48357916 ATATTTATAAAAAATTCAAATTTT
1 ATATTTATAAAAAATTAAAATTTT
*
48357940 ATATTTTTAAAAAATTATAAAATTTT
1 ATATTTATAAAAAA-T-TAAAATTTT
48357966 CAAAAAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 13 0.59
25 1 0.05
26 8 0.36
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
ATATTTATAAAAAATTAAAATTTT
Found at i:48357979 original size:19 final size:19
Alignment explanation
Indices: 48357942--48357980 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
48357932 CAAATTTTAT
* *
48357942 ATTTTTAAAAAATTATAAA
1 ATTTTCAAAAAAATATAAA
*
48357961 ATTTTCAAAAAAATCTAAA
1 ATTTTCAAAAAAATATAAA
48357980 A
1 A
48357981 ATATATAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (19 bp):
ATTTTCAAAAAAATATAAA
Found at i:48358307 original size:21 final size:19
Alignment explanation
Indices: 48358252--48358308 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
48358242 TTATATTTTT
*
48358252 TAAAAAAAATTATAAAAATT
1 TAAAAAAAATTA-AAAAATA
*
48358272 TCAAAAAAATCTAAAAATATA
1 TAAAAAAAAT-TAAAAA-ATA
48358293 TAAAAAAAAGTTAAAA
1 TAAAAAAAA-TTAAAA
48358309 TATTACAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 13 0.42
21 17 0.55
22 1 0.03
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (19 bp):
TAAAAAAAATTAAAAAATA
Found at i:48360348 original size:63 final size:64
Alignment explanation
Indices: 48360194--48360351 Score: 223
Period size: 63 Copynumber: 2.4 Consensus size: 64
48360184 TTATTTATTT
* *
48360194 ATAATAATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATATTCATAA
1 ATAATAATAAATAAATAATAAAATAAAATAAATATTATTTTA-A-TTATTTATTTATATTCATAA
48360259 A
64 A
*
48360260 ATAATAAATAAATAAATAATAAAATAAAATAAATATTATTTT-A-TATTTATTTATGTTCATAAA
1 ATAAT-AATAAATAAATAATAAAATAAAATAAATATTATTTTAATTATTTATTTATATTCAT-AA
48360323 A
64 A
48360324 ATAATAATAAATAAATAA-ATAAATAAAA
1 ATAATAATAAATAAATAATA-AAATAAAA
48360352 ATAATAAGAA
Statistics
Matches: 86, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
62 1 0.01
63 37 0.43
64 8 0.09
65 1 0.01
66 5 0.06
67 34 0.40
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.39
Consensus pattern (64 bp):
ATAATAATAAATAAATAATAAAATAAAATAAATATTATTTTAATTATTTATTTATATTCATAAA
Found at i:48360358 original size:67 final size:65
Alignment explanation
Indices: 48360194--48360351 Score: 212
Period size: 67 Copynumber: 2.4 Consensus size: 65
48360184 TTATTTATTT
* *
48360194 ATAAT-AATAAATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATATTCATA
1 ATAATAAATAAATAAATAATAAAACAAAATAAATATTATTTTACATTTATTTATTTATA-T-AAA
48360258 AA
64 AA
* *
48360260 ATAATAAATAAATAAATAATAAAATAAAATAAATATTATTTTATATTTATTTATGTTCATA-AAA
1 ATAATAAATAAATAAATAATAAAACAAAATAAATATTATTTTACATTTATTTAT-TT-ATATAAA
48360324 ATA
64 A-A
48360327 ATAATAAATAAATAAATAAATAAAA
1 ATAATAAATAAATAAAT-AATAAAA
48360352 ATAATAAGAA
Statistics
Matches: 83, Mismatches: 4, Indels: 8
0.87 0.04 0.08
Matches are distributed among these distances:
66 8 0.10
67 63 0.76
68 9 0.11
69 3 0.04
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.39
Consensus pattern (65 bp):
ATAATAAATAAATAAATAATAAAACAAAATAAATATTATTTTACATTTATTTATTTATATAAAAA
Found at i:48360365 original size:22 final size:22
Alignment explanation
Indices: 48360322--48360365 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
48360312 ATGTTCATAA
* *
48360322 AAATAATAATAAATAAATAAAT
1 AAATAAAAATAAATAAAAAAAT
48360344 AAATAAAAAT-AATAAGAAAAAT
1 AAATAAAAATAAATAA-AAAAAT
48360366 GGAATTGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (22 bp):
AAATAAAAATAAATAAAAAAAT
Found at i:48361071 original size:80 final size:80
Alignment explanation
Indices: 48360885--48362013 Score: 1910
Period size: 80 Copynumber: 14.2 Consensus size: 80
48360875 ATAACTTTAG
* * * * *
48360885 GGGTAAAAGATTAGATTGT-TTCAA-CTTGCCCCATGGTCGAGGTAAGAGATCTGATGGTCTTCA
1 GGGTAAAAGATTGGATT-TCTTCAATC-TGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCA
* *
48360948 ATC-TGCCTTTTGGTTA
64 ATCTTGCCCTCTGGTTA
* *
48360964 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCACGATCGGGGTAAAAGATCAGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48361029 CTTGCCCTCTAGTTA
66 CTTGCCCTCTGGTTA
*
48361044 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTTTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
48361109 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
*
48361124 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAGAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48361189 ATTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
*
48361204 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGACGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
48361269 CTT-CCCTCTGGTTA
66 CTTGCCCTCTGGTTA
** *
48361283 GGGTAAAAGATTGGATTTCTTCAATCTGCCCTTTGATCGGGATAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
48361348 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
* *
48361363 GGGTAAAAGATTGGATTTCTTCAATTTGCCCCATGATCGGGGTAGAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
48361428 CTT-CCCTCTGGTTA
66 CTTGCCCTCTGGTTA
*
48361442 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
48361507 CTT-CCCTCTGGTTA
66 CTTGCCCTCTGGTTA
*
48361521 GGGTAAAAGATTGGATTTCTTCAATCTACCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48361586 CTTGCCCTCTAGTTA
66 CTTGCCCTCTGGTTA
*
48361601 GGGTAAAAGATTGGATTTCTTCAATCCGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48361666 CTTGCCTTCTGGTTA
66 CTTGCCCTCTGGTTA
48361681 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48361746 CTTACCCTCTGGTTA
66 CTTGCCCTCTGGTTA
*
48361761 GGGTAAAAGATTAGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
48361826 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
*
48361841 GGGTAAAAGATTGGATTTCTTCAATCTACCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
48361906 CTTGCCCTCTGGTTA
66 CTTGCCCTCTGGTTA
* * * *
48361921 GGGTAAAAGATTGGATTTCTTCAATTTGCCCCATGATCGGGGTAAAAGATCTGATGGTTTTTAAT
1 GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
*
48361986 CTTGCCCTCTGGTGA
66 CTTGCCCTCTGGTTA
48362001 GGGTAAAAGATTG
1 GGGTAAAAGATTG
48362014 AAGGTTGTAA
Statistics
Matches: 994, Mismatches: 51, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
78 1 0.00
79 284 0.29
80 709 0.71
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (80 bp):
GGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGATCGGGGTAAAAGATCGGATGGTCTTCAAT
CTTGCCCTCTGGTTA
Found at i:48362155 original size:50 final size:50
Alignment explanation
Indices: 48362101--48362246 Score: 211
Period size: 50 Copynumber: 2.9 Consensus size: 50
48362091 TTTAAATGAC
* * * * *
48362101 TGAGATTTGCCATTACAGCTTCATTCTGCCCCTCTACAGCTTTAGGTGTA
1 TGAGATTTGCCATTGCAGTTTCAATCTGCACCTCCACAGCTTTAGGTGTA
* *
48362151 TGAGATTTGACATTGCGGTTTCAATCTGCACCTCCACAGCTTTAGGTGTA
1 TGAGATTTGCCATTGCAGTTTCAATCTGCACCTCCACAGCTTTAGGTGTA
* *
48362201 TGAGATTTACCATTGCAGTTTCAATCTGCACCTCCACCGCTTTAGG
1 TGAGATTTGCCATTGCAGTTTCAATCTGCACCTCCACAGCTTTAGG
48362247 GGTAAAAGAT
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 85 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.34
Consensus pattern (50 bp):
TGAGATTTGCCATTGCAGTTTCAATCTGCACCTCCACAGCTTTAGGTGTA
Found at i:48363191 original size:8 final size:7
Alignment explanation
Indices: 48363176--48363225 Score: 55
Period size: 7 Copynumber: 6.6 Consensus size: 7
48363166 CCCCTTTTTC
48363176 TTTTCTT
1 TTTTCTT
48363183 TTCTTCTT
1 TT-TTCTT
*
48363191 TTTCCTT
1 TTTTCTT
48363198 TTCTGTCTTT
1 TT-T-TC-TT
48363208 TTTTCTT
1 TTTTCTT
48363215 TTTTCTT
1 TTTTCTT
48363222 TTTT
1 TTTT
48363226 TAATTTTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 21 0.57
8 10 0.27
9 2 0.05
10 4 0.11
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (7 bp):
TTTTCTT
Found at i:48363191 original size:19 final size:18
Alignment explanation
Indices: 48363169--48363216 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
48363159 TCGACCTCCC
*
48363169 CTTTTTCTTTTCTTTTCTT
1 CTTTTTCTTTTC-TGTCTT
48363188 CTTTTTCCTTTTCTGTCTT
1 CTTTTT-CTTTTCTGTCTT
48363207 -TTTTTCTTTT
1 CTTTTTCTTTT
48363217 TTCTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 5 0.19
18 5 0.19
19 11 0.41
20 6 0.22
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (18 bp):
CTTTTTCTTTTCTGTCTT
Found at i:48363207 original size:9 final size:8
Alignment explanation
Indices: 48363178--48363223 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
48363168 CCTTTTTCTT
48363178 TTCTTTTC
1 TTCTTTTC
48363186 TTCTTTT-
1 TTCTTTTC
*
48363193 TCCTTTTC
1 TTCTTTTC
*
48363201 TGTCTTTTT
1 T-TCTTTTC
48363210 TTCTTTT-
1 TTCTTTTC
48363217 TTCTTTT
1 TTCTTTT
48363224 TTTAATTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
7 13 0.39
8 14 0.42
9 6 0.18
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (8 bp):
TTCTTTTC
Found at i:48363225 original size:15 final size:16
Alignment explanation
Indices: 48363176--48363226 Score: 70
Period size: 15 Copynumber: 3.2 Consensus size: 16
48363166 CCCCTTTTTC
48363176 TTTTCTTTTCTTC-TT
1 TTTTCTTTTCTTCTTT
*
48363191 TTTCCTTTTCTGTCTTT
1 TTTTCTTTTCT-TCTTT
48363208 TTTTCTTTT-TTCTTT
1 TTTTCTTTTCTTCTTT
48363223 TTTT
1 TTTT
48363227 AATTTTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 19 0.59
16 3 0.09
17 10 0.31
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTCTTCTTT
Found at i:48363226 original size:8 final size:8
Alignment explanation
Indices: 48363170--48363244 Score: 62
Period size: 9 Copynumber: 8.6 Consensus size: 8
48363160 CGACCTCCCC
48363170 TTTTTCTTT
1 TTTTTC-TT
48363179 TCTTTTCTT
1 T-TTTTCTT
48363188 CTTTTTCCTT
1 -TTTTT-CTT
*
48363198 TTCTGTCTT
1 TT-TTTCTT
48363207 TTTTTC-T
1 TTTTTCTT
48363214 TTTTTCTT
1 TTTTTCTT
*
48363222 TTTTTAATT
1 TTTTT-CTT
48363231 TTTTATCTT
1 TTTT-TCTT
48363240 TTTTT
1 TTTTT
48363245 TTGAAATTTC
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
7 7 0.13
8 10 0.18
9 26 0.47
10 12 0.22
ACGTcount: A:0.04, C:0.15, G:0.01, T:0.80
Consensus pattern (8 bp):
TTTTTCTT
Found at i:48368308 original size:8 final size:8
Alignment explanation
Indices: 48368297--48368328 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
48368287 ATTTATATTC
48368297 ATAAAATA
1 ATAAAATA
48368305 AT-AAATA
1 ATAAAATA
48368312 ATAAAATA
1 ATAAAATA
48368320 ATAAAATA
1 ATAAAATA
48368328 A
1 A
48368329 AATTAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
ATAAAATA
Found at i:48368317 original size:15 final size:14
Alignment explanation
Indices: 48368297--48368336 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
48368287 ATTTATATTC
48368297 ATAAAATAATAAATA
1 ATAAAATAATAAA-A
48368312 ATAAAATAAT-AAA
1 ATAAAATAATAAAA
48368325 ATAAAATTAATA
1 ATAAAA-TAATA
48368337 TTATTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.30
14 6 0.26
15 10 0.43
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
ATAAAATAATAAAA
Found at i:48368372 original size:67 final size:65
Alignment explanation
Indices: 48368236--48368392 Score: 194
Period size: 67 Copynumber: 2.3 Consensus size: 65
48368226 TTATTTATTT
*
48368236 ATAAT-AATAA-ATAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATATTCAT
1 ATAATAAATAATA-AAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATA-T-AA
48368299 AAA
63 AAA
* *
48368302 ATAATAAATAATAAAATAATAAAATAAAATTAATATTATTTTATATTTATTTATGTTCATA-AAA
1 ATAATAAATAATAAAATAATAAAACAAAATTAATATTATTTTACATTTATTTAT-TT-ATATAAA
48368366 ATA
64 A-A
48368369 ATAATAAATAAATAAAAATAATAA
1 ATAATAAAT-AAT-AAAATAATAA
48368393 GAAAAATGAA
Statistics
Matches: 81, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
66 8 0.10
67 54 0.67
68 6 0.07
69 13 0.16
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (65 bp):
ATAATAAATAATAAAATAATAAAACAAAATTAATATTATTTTACATTTATTTATTTATATAAAAA
Found at i:48371238 original size:25 final size:24
Alignment explanation
Indices: 48371207--48371266 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 24
48371197 AAATATATTT
48371207 ATTTATTAAAT-TACATCTATTTTA
1 ATTTATTAAATATA-ATCTATTTTA
* *
48371231 ATGTTATTTAAATATAATTTTTTTTA
1 AT-TTA-TTAAATATAATCTATTTTA
48371257 ATTTATTAAA
1 ATTTATTAAA
48371267 AATCATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
24 7 0.23
25 6 0.19
26 16 0.52
27 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (24 bp):
ATTTATTAAATATAATCTATTTTA
Found at i:48371274 original size:24 final size:26
Alignment explanation
Indices: 48371226--48371274 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
48371216 ATTACATCTA
*
48371226 TTTTAATGTTATTTAAATATAATTTT
1 TTTTAATGTTATTTAAAAATAATTTT
*
48371252 TTTTAAT-TTA-TTAAAAATCATTT
1 TTTTAATGTTATTTAAAAATAATTT
48371275 ATTTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.52
25 3 0.14
26 7 0.33
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (26 bp):
TTTTAATGTTATTTAAAAATAATTTT
Found at i:48377287 original size:21 final size:21
Alignment explanation
Indices: 48377244--48377289 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
48377234 ATCCGATCGG
* *
48377244 TTTAGGATCTAATGTTCAGGA
1 TTTAGGATCTAAGGTTCAAGA
* *
48377265 TTTAGGATTTAAGGTTTAAGA
1 TTTAGGATCTAAGGTTCAAGA
48377286 TTTA
1 TTTA
48377290 TATATATTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.43
Consensus pattern (21 bp):
TTTAGGATCTAAGGTTCAAGA
Found at i:48386806 original size:9 final size:9
Alignment explanation
Indices: 48386787--48386838 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
48386777 AGAATTTTTT
48386787 AAAATAGTAA
1 AAAATA-TAA
48386797 AAAATAT-A
1 AAAATATAA
48386805 AAAATATTAA
1 AAAATA-TAA
48386815 AAGAACTATAA
1 AA-AA-TATAA
*
48386826 AAATTATAA
1 AAAATATAA
48386835 AAAA
1 AAAA
48386839 AAATTAGAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
8 7 0.19
9 10 0.28
10 10 0.28
11 7 0.19
12 2 0.06
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (9 bp):
AAAATATAA
Found at i:48386826 original size:20 final size:18
Alignment explanation
Indices: 48386787--48386838 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
48386777 AGAATTTTTT
48386787 AAAATAGTAAAAAATATA
1 AAAATAGTAAAAAATATA
*
48386805 AAAATATTAAAAGAACTATA
1 AAAATAGTAAAA-AA-TATA
48386825 AAAATTA-TAAAAAA
1 AAAA-TAGTAAAAAA
48386839 AAATTAGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 11 0.37
19 4 0.13
20 13 0.43
21 2 0.07
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAATAGTAAAAAATATA
Found at i:48386900 original size:38 final size:38
Alignment explanation
Indices: 48386841--48386916 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 38
48386831 ATAAAAAAAA
* * * *
48386841 ATTAGAGATTGTAAAATATTGTAGAAAAT-TATAAAATT
1 ATTAGAAATTGGAAAAGATTGTAAAAAATAT-TAAAATT
48386879 ATTAGAAATTGGAAAAGATTGTAAAAAATATTAAAATT
1 ATTAGAAATTGGAAAAGATTGTAAAAAATATTAAAATT
48386917 TAAAAAATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 32 0.97
39 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
ATTAGAAATTGGAAAAGATTGTAAAAAATATTAAAATT
Found at i:48387380 original size:9 final size:9
Alignment explanation
Indices: 48387352--48387386 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
48387342 ACATACGATT
48387352 TTATAAAAA
1 TTATAAAAA
*
48387361 TGTATACAAA
1 T-TATAAAAA
48387371 TTATAAAAA
1 TTATAAAAA
48387380 TTATAAA
1 TTATAAA
48387387 TAAATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:48409048 original size:304 final size:306
Alignment explanation
Indices: 48407845--48409178 Score: 1331
Period size: 304 Copynumber: 4.4 Consensus size: 306
48407835 ATTTATGTGT
* * * *
48407845 CTTTTTTAGACTGTCAACAATTGTAAAGAAACGATGCTACATATCATTAGAAAGTTGTTGGATTA
1 CTTTCTTAGACTGTCAACAATTGCAAATAAGCGATGCTACATATCATTAGAAAGTTGTTGGATTA
* * * *
48407910 G-TAACTCATTGTGTAGTAATTATATATATATATATATATTGCCAAATATTTTCTTAAACATTTA
66 GCT-ACCCATTGTGTAG------CA-AT-TATATATATAGTGCCAAATATTTCCTTAAACATTTA
*
48407974 TATGTTTCACATTTGGTAAATTCAATTTCAAGT-AA-TTT-TTTTTATTTGTTAAAAAATTAATT
122 TATGTTTCACATTTGGTAAATTCAATTTCAAGTAAAGTTTCTTTTTATTTGCTAAAAAATTAATT
* * * * * * * *
48408036 TTGGAGAACTGATAGTTATAGTGTCATTGATCACATAACGACTAATAGAAAGATTGGGTCACATA
187 TTGGAGAATTGATAATTATAATGTCACTGATCACATAACGACTAAGAGAGAGATTGGTTCACAGA
* ** * *
48408101 CGGTTGAGAATAAAAAGATGCCATAATC-CTCCTAGCCAAAAGGGCCACATTACATCC
252 CAGCCGAGATTAAAAAGAT--CATAATCAC-CCTAGCGAAAAGGGCCACATTACATCC
* * * * *
48408158 CTTTCTTAGACTGTCAATAATTGCAAATAAGCGATGCTACATGTCATTACAAAGTTTTTGGCTTA
1 CTTTCTTAGACTGTCAACAATTGCAAATAAGCGATGCTACATATCATTAGAAAGTTGTTGGATTA
* * * * * ** * * *
48408223 GCTACCTAGTGTGTAGCAATTATATACATA-T-----ATATGT-GTGT--GTATTTGTGTCTTTC
66 GCTACCCATTGTGTAGCAATTATATATATAGTGCCAAATATTTCCT-TAAACATTTATATGTTTC
* * * **
48408279 ACATTTGGTAAATCCAATTTTAAGTAAAATTTCTTTTTATTTTTTTAAAAAATTAATTTTGGAGA
130 ACATTTGGTAAATTCAATTTCAAGTAAAGTTTCTTTTTA-TTTGCTAAAAAATTAATTTTGGAGA
* * * * * *
48408344 ATTGATGATTATAATATCTCTGATCACATAATGACTGAGAGAGAGATTAGG-TCATAGACAGCCG
194 ATTGATAATTATAATGTCACTGATCACATAACGACTAAGAGAGAGATT-GGTTCACAGACAGCCG
* * * ** * * *
48408408 AGAGTAAAAAAAACCATAATCACCCTAGAAAAAAGGGCCACGTTAAATCT
258 AGA-TTAAAAAGATCATAATCACCCTAGCGAAAAGGGCCACATTACATCC
* * ** *
48408458 TTTTCTTAGACTGTGAACAATTATAAATAAGCGATACTACATATCATTAGAAAGTTGTTGGATTA
1 CTTTCTTAGACTGTCAACAATTGCAAATAAGCGATGCTACATATCATTAGAAAGTTGTTGGATTA
* *
48408523 GCTACCCATTGTGTAACAATTATATATATATGTTGTCAAATATTTCCTTAAACATTTATATGTTT
66 GCTACCCATTGTGTAGCAATTATATATATA-G-TGCCAAATATTTCCTTAAACATTTATATGTTT
*
48408588 CACATTTGGTAAATTCAATTTCAAGTAAAGTTTCTTTTTATTTTCTAAAAAATTAATTTTGGAGA
129 CACATTTGGTAAATTCAATTTCAAGTAAAGTTTCTTTTTATTTGCTAAAAAATTAATTTTGGAGA
** * * * * * * *
48408653 ATTGACGATTATAATGTCACTAATCTCGTAACAACTGAGAGAGAGACT-GTGTCACAGATAGCCG
194 ATTGATAATTATAATGTCACTGATCACATAACGACTAAGAGAGAGATTGGT-TCACAGACAGCCG
* * * * * * *
48408717 AGAGTAAAAAGATCATAATTACCCTAGCGAAACGGTCTACATTATATTC
258 AGATTAAAAAGATCATAATCACCCTAGCGAAAAGGGCCACATTACATCC
* *
48408766 CTTTCTTAGATTGTCAACAATTGCAAAGAAGCGATGCTACATATCATTAGAAAGTTGTTGGATTA
1 CTTTCTTAGACTGTCAACAATTGCAAATAAGCGATGCTACATATCATTAGAAAGTTGTTGGATTA
* * * * *
48408831 ACTACCCATTATGTAGCAATTATATATATAGTGCCAAATATTCCCTT-AA-ATTTTTATGTTCCA
66 GCTACCCATTGTGTAGCAATTATATATATAGTGCCAAATATTTCCTTAAACATTTATATGTTTCA
* * * * *
48408894 CATTTGGCAAATTCAATTTTAAGTAAAGTTTCTTTTTGTTTGCTAAAAAAATAATTTTGAAGAAT
131 CATTTGGTAAATTCAATTTCAAGTAAAGTTTCTTTTTATTTGCTAAAAAATTAATTTTGGAGAAT
* * * * * * * * **
48408959 TGATAATTATAGTGTTACTGATCACGTAACGATTAAAAGACAGATTGGTTTACAAACAATCGAGA
196 TGATAATTATAATGTCACTGATCACATAACGACTAAGAGAGAGATTGGTTCACAGACAGCCGAGA
* * *
48409024 TTAAAAACATCATAATCGCCCTAGCGAAAAGGGGCACATTACATCC
261 TTAAAAAGATCATAATCACCCTAGCGAAAAGGGCCACATTACATCC
* * * * * * *
48409070 CATTCTTAGACTGTCAACAATTGCAAATAAGTGATGTTACATGTCATTAGAAAGCTATTCGATTA
1 CTTTCTTAGACTGTCAACAATTGCAAATAAGCGATGCTACATATCATTAGAAAGTTGTTGGATTA
* *
48409135 GCTATCCATTGTGTAGCAATTATATATAT--TGTCAAATATTTCCT
66 GCTACCCATTGTGTAGCAATTATATATATAGTGCCAAATATTTCCT
48409179 GGTAAAGTTT
Statistics
Matches: 838, Mismatches: 160, Indels: 57
0.79 0.15 0.05
Matches are distributed among these distances:
297 33 0.04
298 3 0.00
299 9 0.01
300 116 0.14
301 73 0.09
302 21 0.03
303 1 0.00
304 235 0.28
305 13 0.02
306 16 0.02
307 3 0.00
308 123 0.15
309 78 0.09
310 46 0.05
313 67 0.08
314 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (306 bp):
CTTTCTTAGACTGTCAACAATTGCAAATAAGCGATGCTACATATCATTAGAAAGTTGTTGGATTA
GCTACCCATTGTGTAGCAATTATATATATAGTGCCAAATATTTCCTTAAACATTTATATGTTTCA
CATTTGGTAAATTCAATTTCAAGTAAAGTTTCTTTTTATTTGCTAAAAAATTAATTTTGGAGAAT
TGATAATTATAATGTCACTGATCACATAACGACTAAGAGAGAGATTGGTTCACAGACAGCCGAGA
TTAAAAAGATCATAATCACCCTAGCGAAAAGGGCCACATTACATCC
Done.