Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 170 of 182
Found at i:51372769 original size:15 final size:16
Alignment explanation
Indices: 51372749--51372778 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51372739 CTTCCTTATT
51372749 TTCTA-TTTCTTTTAG
1 TTCTATTTTCTTTTAG
51372764 TTCTATTTTCTTTTA
1 TTCTATTTTCTTTTA
51372779 TTTTTAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.70
Consensus pattern (16 bp):
TTCTATTTTCTTTTAG
Found at i:51372783 original size:22 final size:22
Alignment explanation
Indices: 51372745--51372804 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
51372735 TCAACTTCCT
* *
51372745 TATTTTCTATTT-CTTTTAGTTC
1 TATTTTCT-TTTATTTTTAATTC
51372767 TATTTTCTTTTATTTTTAATTC
1 TATTTTCTTTTATTTTTAATTC
*
51372789 T-GTTTCTTTTATTTTT
1 TATTTTCTTTTATTTTT
51372805 CCTTAGATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.50
22 17 0.50
ACGTcount: A:0.13, C:0.10, G:0.03, T:0.73
Consensus pattern (22 bp):
TATTTTCTTTTATTTTTAATTC
Found at i:51373241 original size:60 final size:61
Alignment explanation
Indices: 51373177--51373515 Score: 167
Period size: 57 Copynumber: 5.8 Consensus size: 61
51373167 AAAAAAGTGA
* * *
51373177 TCAAAAAATGAAGTTTCA-GAGAA-TTTAG-GGTTAAAATGTAATTTTGGAAAAATTTGGGGG
1 TCAAAATATGAA-TTTCATGA-AAGTTTAGAGGTTAAAATATAATTTTGGAAAAATTTAGGGG
* * * * *
51373237 TCAAAATAT-AATTTTATGAAAGTTTGGAGGTTAAAATATGATTTTGGGAAAGTTTAGGGG
1 TCAAAATATGAATTTCATGAAAGTTTAGAGGTTAAAATATAATTTTGGAAAAATTTAGGGG
* * * * * * *
51373297 TCAAAATATG-ATTT-TTAAAAGTTTA-AGGGTCAAATTTAATTTTGG-GAAATTTAAGGG
1 TCAAAATATGAATTTCATGAAAGTTTAGAGGTTAAAATATAATTTTGGAAAAATTTAGGGG
* * * * * * * * *
51373354 TTAAAATA-CAATTT--TGGAAA-TGTTCGGGGTCAAGATGTAATTTTGGAAAAGTTT-TGGG
1 TCAAAATATGAATTTCAT-GAAAGT-TTAGAGGTTAAAATATAATTTTGGAAAAATTTAGGGG
* * * * *
51373412 TCAAAATATG-ATTTTA-GGAAGTTT-GGGGTCAAAAT-TCAATTTTGGAAAAGTTTA-GGG
1 TCAAAATATGAATTTCATGAAAGTTTAGAGGTTAAAATAT-AATTTTGGAAAAATTTAGGGG
* * ** * * * *
51373469 TCAAAATGT-AATTTTAAAAAAGTTTGGGGGATAACATATAATTTTGG
1 TCAAAATATGAATTTCATGAAAGTTTAGAGGTTAAAATATAATTTTGG
51373516 GAAGTTTAGT
Statistics
Matches: 219, Mismatches: 41, Indels: 39
0.73 0.14 0.13
Matches are distributed among these distances:
56 3 0.01
57 68 0.31
58 61 0.28
59 38 0.17
60 49 0.22
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.36
Consensus pattern (61 bp):
TCAAAATATGAATTTCATGAAAGTTTAGAGGTTAAAATATAATTTTGGAAAAATTTAGGGG
Found at i:51373243 original size:30 final size:30
Alignment explanation
Indices: 51373200--51373571 Score: 265
Period size: 29 Copynumber: 12.8 Consensus size: 30
51373190 TTTCAGAGAA
* * *
51373200 TTTA-GGGTTAAAATGTAATTTTGGAAAAA
1 TTTAGGGGTCAAAATATAATTTTGGAAAAG
* *
51373229 TTTGGGGGTCAAAATATAATTTTATG-AAAG
1 TTTAGGGGTCAAAATATAATTTT-GGAAAAG
* * *
51373259 TTT-GGAGGTTAAAATATGATTTTGGGAAAG
1 TTTAGG-GGTCAAAATATAATTTTGGAAAAG
* *
51373289 TTTAGGGGTCAAAATATGATTTT-TAAAAG
1 TTTAGGGGTCAAAATATAATTTTGGAAAAG
* * *
51373318 TTTAAGGGTC-AAATTTAATTTTGGGAAA-
1 TTTAGGGGTCAAAATATAATTTTGGAAAAG
* * * *
51373346 TTTAAGGGTTAAAATACAATTTTGGAAATG
1 TTTAGGGGTCAAAATATAATTTTGGAAAAG
* * *
51373376 -TTCGGGGTCAAGATGTAATTTTGGAAAAG
1 TTTAGGGGTCAAAATATAATTTTGGAAAAG
* *
51373405 TTT-TGGGTCAAAATATGATTTTAGG--AAG
1 TTTAGGGGTCAAAATATAATTTT-GGAAAAG
51373433 TTT-GGGGTCAAAAT-TCAATTTTGGAAAAG
1 TTTAGGGGTCAAAATAT-AATTTTGGAAAAG
* **
51373462 TTTA-GGGTCAAAATGTAATTTTAAAAAAG
1 TTTAGGGGTCAAAATATAATTTTGGAAAAG
* * *
51373491 TTTGGGGGAT-AACATATAATTTTGG-GAAG
1 TTTAGGGG-TCAAAATATAATTTTGGAAAAG
* * * *
51373520 TTTAGTGGTTAAAATGTAATTTT-AAAAAG
1 TTTAGGGGTCAAAATATAATTTTGGAAAAG
* *
51373549 TTTGAGGGCT-AAAATGTAATTTT
1 TTT-AGGGGTCAAAATATAATTTT
51373572 TAGATAAAAC
Statistics
Matches: 273, Mismatches: 50, Indels: 40
0.75 0.14 0.11
Matches are distributed among these distances:
27 3 0.01
28 41 0.15
29 142 0.52
30 83 0.30
31 4 0.01
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.37
Consensus pattern (30 bp):
TTTAGGGGTCAAAATATAATTTTGGAAAAG
Found at i:51375748 original size:18 final size:18
Alignment explanation
Indices: 51375725--51375761 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
51375715 AGCAGACCAT
51375725 AGTGAATCCAATATGTGA
1 AGTGAATCCAATATGTGA
51375743 AGTGAATCCAATATGTGA
1 AGTGAATCCAATATGTGA
51375761 A
1 A
51375762 TCGATAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.27
Consensus pattern (18 bp):
AGTGAATCCAATATGTGA
Found at i:51379673 original size:27 final size:25
Alignment explanation
Indices: 51379625--51379686 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 25
51379615 TAAAAGTTGA
*
51379625 TAAATAAATATTTTAACCTTTAAAAGT
1 TAAA-AAA-ATTTTAACCTTTAAAAAT
51379652 TAAAAAAATTTTAGACCTTTTAAAAAT
1 TAAAAAAATTTTA-ACC-TTTAAAAAT
*
51379679 AAAAAAAA
1 TAAAAAAA
51379687 ACAAAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 6 0.19
26 6 0.19
27 19 0.61
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.34
Consensus pattern (25 bp):
TAAAAAAATTTTAACCTTTAAAAAT
Found at i:51379681 original size:26 final size:25
Alignment explanation
Indices: 51379623--51379685 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
51379613 CTTAAAAGTT
51379623 GATAAATAAATATTTTAACCTTTAAAA
1 GATAAA-AAA-ATTTTAACCTTTAAAA
*
51379650 GTTAAAAAAATTTTAGACCTTTTAAAA
1 GATAAAAAAATTTTA-ACC-TTTAAAA
51379677 -ATAAAAAAA
1 GATAAAAAAA
51379686 AACAAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 6 0.19
26 14 0.44
27 12 0.38
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (25 bp):
GATAAAAAAATTTTAACCTTTAAAA
Found at i:51380742 original size:27 final size:27
Alignment explanation
Indices: 51380689--51380742 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
51380679 TAGCCAATAT
*
51380689 AAGAAAGTGCCATGTGTGACAAGTCAA
1 AAGAAAGTGCCATGTGTCACAAGTCAA
**
51380716 AAGAAAGTGTTATGTGTCATCAA-TCAA
1 AAGAAAGTGCCATGTGTCA-CAAGTCAA
51380743 TTGGCTCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.24
Consensus pattern (27 bp):
AAGAAAGTGCCATGTGTCACAAGTCAA
Found at i:51383542 original size:58 final size:58
Alignment explanation
Indices: 51383463--51383863 Score: 271
Period size: 59 Copynumber: 6.8 Consensus size: 58
51383453 TCAAAAACAA
* * * ** *
51383463 AATTTTTGGACA-TCTGAGGGTAAAAGGGTAA-TTTTGGGAGTTTCCGTGTCAAAAATGG
1 AATTTTTGGA-AGTTTGGGGGTAAAA-GGTAATTTTTGGAAGTTTAGGGGTCAAAAATGG
* * *** *
51383521 AATTTTTGGAAGTTTAGGGGTAAATGGTAATTTTCAAAAGTTTAGGGGTC-AAAATTG
1 AATTTTTGGAAGTTTGGGGGTAAAAGGTAATTTTTGGAAGTTTAGGGGTCAAAAATGG
* * *
51383578 AGATTTTTGGAAGTTTGGGGGTAAAATGTAATTTTTGGAAGTTTTA-AGGTTAAAAATGG
1 A-ATTTTTGGAAGTTTGGGGGTAAAAGGTAATTTTTGGAAG-TTTAGGGGTCAAAAATGG
* * ** * *
51383637 ATTTTTTAGAAGTTTGGGGGTAAAAATATAATTTTTGGAAGTTTTGGGGTTAAAAATGG
1 AATTTTTGGAAGTTTGGGGGT-AAAAGGTAATTTTTGGAAGTTTAGGGGTCAAAAATGG
* * * * * * **
51383696 AATTTTTGGAAGTTCGAGTGTAAAAATGTAATTTTTAGG-AGTTTCGAGGTCAAAAATAT
1 AATTTTTGGAAGTTTGGGGGT-AAAAGGTAATTTTT-GGAAGTTTAGGGGTCAAAAATGG
* * * * *
51383755 AATTTTAGAGAAGTTTGGGGGTTAAAATGTATTTTTTAGG-AGTTTCA-AGGTTAAAATAT--
1 AATTTTTG-GAAGTTTGGGGG-TAAAAGGTAATTTTT-GGAAGTTT-AGGGGTCAAAA-ATGG
* **
51383814 AATTTTGGAGAAGTTTGGGGGTCAAAATATAATTTTTGGATAGTTTAGGG
1 AATTTTTG-GAAGTTTGGGGGT-AAAAGGTAATTTTTGGA-AGTTTAGGG
51383864 ACCTTCAGGG
Statistics
Matches: 279, Mismatches: 48, Indels: 30
0.78 0.13 0.08
Matches are distributed among these distances:
57 13 0.05
58 91 0.33
59 126 0.45
60 46 0.16
61 3 0.01
ACGTcount: A:0.32, C:0.03, G:0.27, T:0.38
Consensus pattern (58 bp):
AATTTTTGGAAGTTTGGGGGTAAAAGGTAATTTTTGGAAGTTTAGGGGTCAAAAATGG
Found at i:51383613 original size:29 final size:29
Alignment explanation
Indices: 51383513--51383859 Score: 256
Period size: 30 Copynumber: 11.8 Consensus size: 29
51383503 TTTCCGTGTC
* *
51383513 AAAAATGGAATTTTTGGAAGTTTAGGGGT
1 AAAAATGTAATTTTTGGAAGTTTGGGGGT
*** *
51383542 --AAATGGTAATTTTCAAAAGTTTAGGGGT
1 AAAAAT-GTAATTTTTGGAAGTTTGGGGGT
*
51383570 CAAAAT-TGAGATTTTTGGAAGTTTGGGGGT
1 AAAAATGT-A-ATTTTTGGAAGTTTGGGGGT
** *
51383600 -AAAATGTAATTTTTGGAAGTTTTAAGGTT
1 AAAAATGTAATTTTTGGAAG-TTTGGGGGT
* * *
51383629 AAAAATGGATTTTTTAGAAGTTTGGGGGT
1 AAAAATGTAATTTTTGGAAGTTTGGGGGT
* *
51383658 AAAAATATAATTTTTGGAAGTTTTGGGGTT
1 AAAAATGTAATTTTTGGAAG-TTTGGGGGT
* * * *
51383688 AAAAATGGAATTTTTGGAAGTTCGAGTGT
1 AAAAATGTAATTTTTGGAAGTTTGGGGGT
* *
51383717 AAAAATGTAATTTTTAGG-AGTTTCGAGGT
1 AAAAATGTAATTTTT-GGAAGTTTGGGGGT
* *
51383746 CAAAAATATAATTTTAGAGAAGTTTGGGGGT
1 -AAAAATGTAATTTTTG-GAAGTTTGGGGGT
* * ***
51383777 TAAAATGTATTTTTTAGG-AGTTTCAAGGT
1 AAAAATGTAATTTTT-GGAAGTTTGGGGGT
* * *
51383806 TAAAATATAATTTTGGAGAAGTTTGGGGGT
1 AAAAATGTAATTTTTG-GAAGTTTGGGGGT
* *
51383836 CAAAATATAATTTTTGGATAGTTT
1 AAAAATGTAATTTTTGGA-AGTTT
51383860 AGGGACCTTC
Statistics
Matches: 248, Mismatches: 53, Indels: 33
0.74 0.16 0.10
Matches are distributed among these distances:
27 4 0.02
28 32 0.13
29 84 0.34
30 118 0.48
31 10 0.04
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.39
Consensus pattern (29 bp):
AAAAATGTAATTTTTGGAAGTTTGGGGGT
Found at i:51389479 original size:12 final size:12
Alignment explanation
Indices: 51389462--51389489 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
51389452 TGTGACATAT
51389462 TAATCAATTGAA
1 TAATCAATTGAA
51389474 TAATCAATTGAA
1 TAATCAATTGAA
51389486 TAAT
1 TAAT
51389490 AGCACGTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (12 bp):
TAATCAATTGAA
Found at i:51391822 original size:23 final size:23
Alignment explanation
Indices: 51391796--51391841 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
51391786 TGATTGGAGG
*
51391796 AAAGTTTTAAATACTCAAATTGA
1 AAAGATTTAAATACTCAAATTGA
51391819 AAAGATTTAAATACTCAAATTGA
1 AAAGATTTAAATACTCAAATTGA
51391842 GTGGGAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.33
Consensus pattern (23 bp):
AAAGATTTAAATACTCAAATTGA
Found at i:51394995 original size:22 final size:23
Alignment explanation
Indices: 51394976--51395018 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
51394966 ATTGTTTTCT
51394976 TGCT-ATTTTCCTATTTTTTTGC
1 TGCTGATTTTCCTATTTTTTTGC
* *
51394998 TGCTGTTTTTCCTGTTTTTTT
1 TGCTGATTTTCCTATTTTTTT
51395019 TCAATTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.05, C:0.16, G:0.12, T:0.67
Consensus pattern (23 bp):
TGCTGATTTTCCTATTTTTTTGC
Found at i:51406667 original size:29 final size:29
Alignment explanation
Indices: 51406631--51406833 Score: 191
Period size: 29 Copynumber: 7.0 Consensus size: 29
51406621 TTAGACATCC
*
51406631 GGGGT-AAAATGATAACTTTGGAAAGTTTG
1 GGGGTAAAAATG-TAATTTTGGAAAGTTTG
*
51406660 GGGGTAAAAATGTAATTTTTGGAAAATTT-
1 GGGGTAAAAATGTAA-TTTTGGAAAGTTTG
* *
51406689 AGGGTAAAAATGGAATTTTGGAAAGTTT-
1 GGGGTAAAAATGTAATTTTGGAAAGTTTG
* * *
51406717 GGGGCAAAAATGTAATTTTTAGAAAG-TTC
1 GGGGTAAAAATGTAA-TTTTGGAAAGTTTG
* * *
51406746 GAGGTCAAAAATGGAATTTTGGAAAG-TTC
1 GGGGT-AAAAATGTAATTTTGGAAAGTTTG
* * *
51406775 GAGGTCAAAAATGGAATTTTGGAAAGTTTA
1 GGGGT-AAAAATGTAATTTTGGAAAGTTTG
*
51406805 GGGGTAAAAATGTAATTTTTGGATAGTTT
1 GGGGTAAAAATGTAA-TTTTGGAAAGTTT
51406834 AGGGACCTTC
Statistics
Matches: 150, Mismatches: 17, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
28 26 0.17
29 80 0.53
30 44 0.29
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (29 bp):
GGGGTAAAAATGTAATTTTGGAAAGTTTG
Found at i:51406709 original size:58 final size:57
Alignment explanation
Indices: 51406647--51406833 Score: 216
Period size: 58 Copynumber: 3.2 Consensus size: 57
51406637 AAATGATAAC
51406647 TTTGGAAAGTTTGGGGGTAAAAATGTAATTTTTGGAAAATTTAGGGTAAAAATGGAAT
1 TTTGGAAAGTTT-GGGGTAAAAATGTAATTTTTGGAAAATTTAGGGTAAAAATGGAAT
* * * *
51406705 TTTGGAAAGTTTGGGGCAAAAATGTAATTTTTAG-AAAGTTCGAGGTCAAAAATGGAAT
1 TTTGGAAAGTTTGGGGTAAAAATGTAATTTTTGGAAAATTTAG-GGT-AAAAATGGAAT
* * * * *
51406763 TTTGGAAAGTTCGAGGTCAAAAATGGAA-TTTTGGAAAGTTTAGGGGTAAAAATGTAATT
1 TTTGGAAAGTTTGGGGT-AAAAATGTAATTTTTGGAAAATTTA-GGGTAAAAATGGAA-T
*
51406822 TTTGGATAGTTT
1 TTTGGAAAGTTT
51406834 AGGGACCTTC
Statistics
Matches: 108, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
56 6 0.06
57 23 0.21
58 51 0.47
59 27 0.25
60 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.27, T:0.34
Consensus pattern (57 bp):
TTTGGAAAGTTTGGGGTAAAAATGTAATTTTTGGAAAATTTAGGGTAAAAATGGAAT
Found at i:51406727 original size:87 final size:87
Alignment explanation
Indices: 51406571--51406833 Score: 261
Period size: 87 Copynumber: 3.0 Consensus size: 87
51406561 CTTTGGACAC
* * * * * **
51406571 TCGAGGGC-AAAATGGTAATTTTGGAAAAGTTCAGGGTCAAATATGGAATTTTAGACA-TCCGGG
1 TCGAGGTCAAAAAT-GTAATTTTGGAAAA-TTTAGGGTCAAAAATGGAATTTTGGAAAGTTTGGG
* *
51406634 GTAAAATGATAA-CTTTGGAAAGTT
64 GAAAAATG-TAATTTTTGGAAAGTT
* *
51406658 TGGGGGT-AAAAATGTAATTTTTGGAAAATTTAGGGT-AAAAATGGAATTTTGGAAAGTTTGGGG
1 TCGAGGTCAAAAATGTAA-TTTTGGAAAATTTAGGGTCAAAAATGGAATTTTGGAAAGTTTGGGG
*
51406721 CAAAAATGTAATTTTTAGAAAG-T
65 -AAAAATGTAATTTTTGGAAAGTT
* * *
51406744 TCGAGGTCAAAAATGGAATTTTGG-AAAGTTCGAGGTCAAAAATGGAATTTTGGAAAGTTTAGGG
1 TCGAGGTCAAAAATGTAATTTTGGAAAATTTAG-GGTCAAAAATGGAATTTTGGAAAGTTT-GGG
*
51406808 GTAAAAATGTAATTTTTGGATAGTT
64 G-AAAAATGTAATTTTTGGAAAGTT
51406833 T
1 T
51406834 AGGGACCTTC
Statistics
Matches: 146, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
85 22 0.15
86 34 0.23
87 65 0.45
88 23 0.16
89 2 0.01
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.32
Consensus pattern (87 bp):
TCGAGGTCAAAAATGTAATTTTGGAAAATTTAGGGTCAAAAATGGAATTTTGGAAAGTTTGGGGA
AAAATGTAATTTTTGGAAAGTT
Found at i:51409735 original size:48 final size:47
Alignment explanation
Indices: 51409683--51409885 Score: 131
Period size: 49 Copynumber: 4.2 Consensus size: 47
51409673 CGACTTAAAC
*
51409683 CTTTCCCTTGTATCTTCGTGGTACTGGATCCGCCGTCGCGGCTTAGAT
1 CTTTCCCTT-TATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* * * * * ** * *
51409731 CTTTCCCTTCATGTCTCTGAGGTACTAGG-TTCGCCATTGCAACTTAAAC
1 CTTTCCCTTTATCT-TC-GTGGTACT-GGATCCGCCGTTGCGGCTTAGAT
* * * *
51409780 CTTTCCCTTATGTCTTTGTTGTATTGGATCCGCCGTTGCGGCTTAGAT
1 CTTTCCCTT-TATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
* * * * * **
51409828 CTTTCCTTTTATGTCTCTGAGGTACTAGG-TTCGCCATTGCAACTTAGAT
1 CTTTCCCTTTATCT-TC-GTGGTACT-GGATCCGCCGTTGCGGCTTAGAT
51409877 CTTTCCCTT
1 CTTTCCCTT
51409886 CATGCTTCTA
Statistics
Matches: 112, Mismatches: 35, Indels: 15
0.69 0.22 0.09
Matches are distributed among these distances:
47 8 0.07
48 39 0.35
49 59 0.53
50 6 0.05
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39
Consensus pattern (47 bp):
CTTTCCCTTTATCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGAT
Found at i:51409784 original size:49 final size:49
Alignment explanation
Indices: 51409731--51409937 Score: 213
Period size: 49 Copynumber: 4.2 Consensus size: 49
51409721 CGGCTTAGAT
51409731 CTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCAACTTAAAC
1 CTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCAACTTAAAC
* ** * * * ** * *
51409780 CTTTCCCTT-ATGTCTTTGTTGTA-TTGGATCCGCCGTTGCGGCTTAGAT
1 CTTTCCCTTCATGTCTCTGAGGTACTAGG-TTCGCCATTGCAACTTAAAC
* * * *
51409828 CTTTCCTTTTATGTCTCTGAGGTACTAGGTTCGCCATTGCAACTTAGAT
1 CTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCAACTTAAAC
* * *
51409877 CTTTCCCTTCATG-CTTCTAAGGTACTAGGTTCACTATTGCAACTTAAAC
1 CTTTCCCTTCATGTC-TCTGAGGTACTAGGTTCGCCATTGCAACTTAAAC
*
51409926 CTTGCCCTTCAT
1 CTTTCCCTTCAT
51409938 ATCTTCTTGG
Statistics
Matches: 127, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
47 3 0.02
48 34 0.27
49 87 0.69
50 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (49 bp):
CTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCAACTTAAAC
Found at i:51409784 original size:97 final size:97
Alignment explanation
Indices: 51409662--51409885 Score: 340
Period size: 97 Copynumber: 2.3 Consensus size: 97
51409652 AAGGTACCGA
* * *
51409662 GTTCGCTATTGCGACTTAAACCTTTCCCTTGTATCTTCGTGGTACTGGATCCGCCGTCGCGGCTT
1 GTTCGCCATTGCAACTTAAACCTTTCCCTTATATCTTCGTGGTACTGGATCCGCCGTCGCGGCTT
51409727 AGATCTTTCCCTTCATGTCTCTGAGGTACTAG
66 AGATCTTTCCCTTCATGTCTCTGAGGTACTAG
* * * * *
51409759 GTTCGCCATTGCAACTTAAACCTTTCCCTTATGTCTTTGTTGTATTGGATCCGCCGTTGCGGCTT
1 GTTCGCCATTGCAACTTAAACCTTTCCCTTATATCTTCGTGGTACTGGATCCGCCGTCGCGGCTT
* *
51409824 AGATCTTTCCTTTTATGTCTCTGAGGTACTAG
66 AGATCTTTCCCTTCATGTCTCTGAGGTACTAG
* *
51409856 GTTCGCCATTGCAACTTAGATCTTTCCCTT
1 GTTCGCCATTGCAACTTAAACCTTTCCCTT
51409886 CATGCTTCTA
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
97 115 1.00
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (97 bp):
GTTCGCCATTGCAACTTAAACCTTTCCCTTATATCTTCGTGGTACTGGATCCGCCGTCGCGGCTT
AGATCTTTCCCTTCATGTCTCTGAGGTACTAG
Found at i:51412048 original size:92 final size:92
Alignment explanation
Indices: 51411943--51412110 Score: 205
Period size: 92 Copynumber: 1.8 Consensus size: 92
51411933 CAGAATATCC
* * * * *
51411943 TTTTGGTCCCGATTTTTAAGCTA-AGT-ATCGATATTTGAGGAAAATTATCGATACCTTTGAGAA
1 TTTTGGTCCCGATTATTAAG-TACAGTAAT-GATATTTGAGGAAAAATATCAATACCTTTCAAAA
51412006 GGTATCAATACCAGAGTTCCAGAGAGTCT
64 GGTATCAATACCAGAGTTCCAGAGAGTCT
* * * **
51412035 TTTTGGTCTCGATTATTCAGTACATTAATGATATTTTTGGAAAAATATCAATACCTTTCAAAAGG
1 TTTTGGTCCCGATTATTAAGTACAGTAATGATATTTGAGGAAAAATATCAATACCTTTCAAAAGG
*
51412100 TATCGATACCA
66 TATCAATACCA
51412111 ATTTGATAGA
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
91 2 0.03
92 59 0.94
93 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (92 bp):
TTTTGGTCCCGATTATTAAGTACAGTAATGATATTTGAGGAAAAATATCAATACCTTTCAAAAGG
TATCAATACCAGAGTTCCAGAGAGTCT
Found at i:51417050 original size:99 final size:98
Alignment explanation
Indices: 51416858--51417050 Score: 235
Period size: 99 Copynumber: 2.0 Consensus size: 98
51416848 ATATAATATA
* *
51416858 TTTAATTATAAATATTGACTGTGTGATTAAATGATAAAATTGTGAAATTAATTGAGAAAATAAAG
1 TTTAATTATAAATATTGACTATATGATTAAATGATAAAATTGTGAAATTAATTGAGAAAATAAAG
* * *
51416923 GTAAGGAATACTTGATGATATATTTGTGATGTG
66 GTAAGGAATACATGATAATATATATGTGATGTG
* * * * * * *
51416956 TTTATTTATAAATATTGATTATATGATTAAATTGGTGATATTGTGGAATTATTTGAGAAAATAAA
1 TTTAATTATAAATATTGACTATATGATTAAA-TGATAAAATTGTGAAATTAATTGAGAAAATAAA
* *
51417021 GGTAA-GACTTACATGATAATGTATATGTGA
65 GGTAAGGA-ATACATGATAATATATATGTGA
51417051 AGTATAAATT
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
98 29 0.37
99 50 0.63
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.39
Consensus pattern (98 bp):
TTTAATTATAAATATTGACTATATGATTAAATGATAAAATTGTGAAATTAATTGAGAAAATAAAG
GTAAGGAATACATGATAATATATATGTGATGTG
Found at i:51417182 original size:23 final size:23
Alignment explanation
Indices: 51417153--51417299 Score: 154
Period size: 23 Copynumber: 6.3 Consensus size: 23
51417143 CCTTAGCGCT
51417153 CTCTCCGTTTAGCACTTTGTGTG
1 CTCTCCGTTTAGCACTTTGTGTG
* *
51417176 CTCTCCGTTTAGTACTTTATGTG
1 CTCTCCGTTTAGCACTTTGTGTG
* * *
51417199 CTCTCCGATTAGTACTTTGTGTA
1 CTCTCCGTTTAGCACTTTGTGTG
* * *
51417222 CTCTTCATTTAGTACTTTGTGTG
1 CTCTCCGTTTAGCACTTTGTGTG
* *
51417245 CTCTCTGTTACCTAGCACGTT-TGTG
1 CTCTCCGTT---TAGCACTTTGTGTG
*
51417270 CTCTCCGTTTAGCACCTTG-GTG
1 CTCTCCGTTTAGCACTTTGTGTG
51417292 CTCTCCGT
1 CTCTCCGT
51417300 ATTTGTTCCA
Statistics
Matches: 104, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
22 19 0.18
23 66 0.63
25 12 0.12
26 7 0.07
ACGTcount: A:0.12, C:0.26, G:0.19, T:0.44
Consensus pattern (23 bp):
CTCTCCGTTTAGCACTTTGTGTG
Found at i:51417992 original size:92 final size:90
Alignment explanation
Indices: 51417831--51418047 Score: 226
Period size: 92 Copynumber: 2.4 Consensus size: 90
51417821 AAAAATTAAT
* * * *
51417831 GAAAATTATCGATACCATTTGATATGGTATCGATACCCAATTGACAGAATGTCTTTTTGGTCTCG
1 GAAAATTATCGATACC-TTTGAAAAGGTATCGATACCCAATT-ACAGAAAGTCCTTTTGGTCTC-
* * *
51417896 ATTTTTAAGCTA-AGTATCAATATTTGAG
63 AATTTTAAG-AACAGTACCAATATTTGAG
*
51417924 GAAAATTATCGATACCTTTGAGAAGGTATCGATA-CCAGAGTT-CTAGAAAGTCCTTTTGGTCTC
1 GAAAATTATCGATACCTTTGAAAAGGTATCGATACCCA-A-TTAC-AGAAAGTCCTTTTGGTCTC
* *
51417987 AATTTTCAGAACAGTACCAATATTTTAG
63 AATTTTAAGAACAGTACCAATATTTGAG
* * *
51418015 GAAAA-TATTGATAACTTTCAAAAGGTATCGATA
1 GAAAATTATCGATACCTTTGAAAAGGTATCGATA
51418048 ACAATTTGAC
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
90 25 0.23
91 30 0.28
92 34 0.32
93 18 0.17
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (90 bp):
GAAAATTATCGATACCTTTGAAAAGGTATCGATACCCAATTACAGAAAGTCCTTTTGGTCTCAAT
TTTAAGAACAGTACCAATATTTGAG
Found at i:51418082 original size:90 final size:89
Alignment explanation
Indices: 51417831--51418082 Score: 224
Period size: 90 Copynumber: 2.8 Consensus size: 89
51417821 AAAAATTAAT
* * * *
51417831 GAAAATTATCGATACCATTTGATATGGTATCGATACCCAATTGACAGAATGTCTTTTTGGTCTCG
1 GAAAATTATCGATAAC-TTTCAAAAGGTATCGATA-CCAATTGACAGAATGTCTTTTT-GTCTCG
* * *
51417896 ATTTTTAAGCTAAGTATCAATATTTGAG
63 ATTTTCAAAC-AAGTACCAATATTTGAG
* * * * *
51417924 GAAAATTATCGATACCTTTGAGAAGGTATCGATACCAGAGTT--CTAGAAAGTCCTTTTGGTCTC
1 GAAAATTATCGATAACTTTCAAAAGGTATCGATACCA-A-TTGAC-AGAATGT-CTTTTTGTCTC
* *
51417987 AATTTTCAGAAC-AGTACCAATATTTTAG
62 GATTTTCA-AACAAGTACCAATATTTGAG
* * *
51418015 GAAAA-TATTGATAACTTTCAAAAGGTATCGATAACAATTTGACAGAATGTCTTGTTTGTTTCGA
1 GAAAATTATCGATAACTTTCAAAAGGTATCGATACCAA-TTGACAGAATGTCTT-TTTGTCTCGA
51418079 TTTT
64 TTTT
51418083 TACTTTTGGT
Statistics
Matches: 132, Mismatches: 19, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
89 6 0.05
90 43 0.33
91 24 0.18
92 34 0.26
93 25 0.19
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (89 bp):
GAAAATTATCGATAACTTTCAAAAGGTATCGATACCAATTGACAGAATGTCTTTTTGTCTCGATT
TTCAAACAAGTACCAATATTTGAG
Found at i:51420983 original size:28 final size:28
Alignment explanation
Indices: 51420963--51421040 Score: 129
Period size: 28 Copynumber: 2.8 Consensus size: 28
51420953 TTTAGGTACC
51420963 CAGGGGAAAAATGGTAATTTTGGACACT
1 CAGGGGAAAAATGGTAATTTTGGACACT
*
51420991 CAGGGGTAAAATGGTAATTTTGGACACT
1 CAGGGGAAAAATGGTAATTTTGGACACT
* *
51421019 TAGGGGCAAAATGGTAATTTTG
1 CAGGGGAAAAATGGTAATTTTG
51421041 TGAAATTTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (28 bp):
CAGGGGAAAAATGGTAATTTTGGACACT
Found at i:51421147 original size:28 final size:28
Alignment explanation
Indices: 51421115--51421243 Score: 105
Period size: 29 Copynumber: 4.5 Consensus size: 28
51421105 ATCGAGGTCA
*
51421115 AAAATGGATTTTTTGGAAGTTTAAGGGT
1 AAAATGGAATTTTTGGAAGTTTAAGGGT
* * ** * *
51421143 AAAATAGAAATTTTGGGAAAATTGAGGTT
1 AAAAT-GGAATTTTTGGAAGTTTAAGGGT
* * *
51421172 AAAAATGGAATTTTAGGAAGTTCAGGGGT
1 -AAAATGGAATTTTTGGAAGTTTAAGGGT
* * *
51421201 AAAATGTAATTTTTGGAAGTTTGAGGGCA
1 AAAATGGAATTTTTGGAAGTTTAAGGG-T
*
51421230 AAAATGTAATTTTT
1 AAAATGGAATTTTT
51421244 TGAAAATCAG
Statistics
Matches: 77, Mismatches: 21, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
28 27 0.35
29 45 0.58
30 5 0.06
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.35
Consensus pattern (28 bp):
AAAATGGAATTTTTGGAAGTTTAAGGGT
Found at i:51421215 original size:58 final size:60
Alignment explanation
Indices: 51420998--51421242 Score: 213
Period size: 58 Copynumber: 4.2 Consensus size: 60
51420988 ACTCAGGGGT
* * * * * *
51420998 AAAATGGTAATTTT-GGACACTT-AGGGGCAAAATGGTAA-TTTTGTGAAATTTTGGGGTTA
1 AAAATGG-AATTTTAGGACAGTTCAGGGGTAAAATGGTAATTTTTGGGAAA-ATTGAGGTCA
* * * *
51421057 AAAATGGAATTTTA-GATA-TTCGGGGGTAAAATGGTAATTTTTGGAAAAATCGAGGTCA
1 AAAATGGAATTTTAGGACAGTTCAGGGGTAAAATGGTAATTTTTGGGAAAATTGAGGTCA
* * * * * * *
51421115 AAAATGGATTTTTTGGA-AGTTTAAGGGTAAAATAG-AAATTTTGGGAAAATTGAGGTTA
1 AAAATGGAATTTTAGGACAGTTCAGGGGTAAAATGGTAATTTTTGGGAAAATTGAGGTCA
** *
51421173 AAAATGGAATTTTAGGA-AGTTCAGGGGTAAAAT-GTAATTTTT-GGAAGTTTGAGGGCA
1 AAAATGGAATTTTAGGACAGTTCAGGGGTAAAATGGTAATTTTTGGGAAAATTGAGGTCA
*
51421230 AAAATGTAATTTT
1 AAAATGGAATTTT
51421243 TTGAAAATCA
Statistics
Matches: 151, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
57 26 0.17
58 96 0.64
59 29 0.19
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (60 bp):
AAAATGGAATTTTAGGACAGTTCAGGGGTAAAATGGTAATTTTTGGGAAAATTGAGGTCA
Found at i:51421255 original size:28 final size:30
Alignment explanation
Indices: 51421084--51421303 Score: 102
Period size: 29 Copynumber: 7.5 Consensus size: 30
51421074 ATTCGGGGGT
*
51421084 AAAATGGTAATTTTTGGAAAAATC-GAGGTCA
1 AAAAT-GTAATTTTTGGAAGAATCAG-GGTCA
* * ** *
51421115 AAAATGGATTTTTTGGAAGTTTAAGGGT--
1 AAAATGTAATTTTTGGAAGAATCAGGGTCA
* * * *
51421143 AAAATAGAAATTTTGGGAA-AAT-TGAGGTTA
1 AAAAT-GTAATTTTTGGAAGAATCAG-GGTCA
* * *
51421173 AAAATGGAATTTTAGGAAG-TTCAGGGGT--
1 AAAATGTAATTTTTGGAAGAATCA-GGGTCA
** *
51421201 AAAATGTAATTTTTGGAAGTTTGAGGG-CA
1 AAAATGTAATTTTTGGAAGAATCAGGGTCA
*
51421230 AAAATGTAATTTTTTGAA-AATCAGGGTCA
1 AAAATGTAATTTTTGGAAGAATCAGGGTCA
* * ** *
51421259 AAAATATAATTTTGGAGAAGTTTGAGGGGTC-
1 AAAATGTAATTTTTG-GAAGAATCA-GGGTCA
51421290 AAAATGTAATTTTT
1 AAAATGTAATTTTT
51421304 AGATAGTTCA
Statistics
Matches: 143, Mismatches: 31, Indels: 30
0.70 0.15 0.15
Matches are distributed among these distances:
27 1 0.01
28 34 0.24
29 56 0.39
30 26 0.18
31 21 0.15
32 5 0.03
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.34
Consensus pattern (30 bp):
AAAATGTAATTTTTGGAAGAATCAGGGTCA
Found at i:51421284 original size:116 final size:118
Alignment explanation
Indices: 51421026--51421316 Score: 294
Period size: 116 Copynumber: 2.5 Consensus size: 118
51421016 ACTTAGGGGC
* * * *
51421026 AAAATGGTAATTTTGTGA-AATTTTGGGGTTAAAAATGGAATTTTAGATA-TTCGGGGGTAAAAT
1 AAAATAGTAATTTTG-GAGAAATTTGAGGTTAAAAATGGAATTTTAGATAGTTCAGGGGTAAAAT
* * **
51421089 GGTAATTTTTGGAAAAATCGAGGTCAAAAATGGATTTTTTGGAAGTTTAAGGGT
65 GGTAATTTTTGGAAAAATCGAGGGCAAAAATGAATTTTTTGGAAGAATAAGGGT
* *
51421143 AAAATAGAAATTTTGG-GAAAATTGAGGTTAAAAATGGAATTTTAGGA-AGTTCAGGGGTAAAAT
1 AAAATAGTAATTTTGGAGAAATTTGAGGTTAAAAATGGAATTTTA-GATAGTTCAGGGGTAAAAT
** * *
51421206 -GTAATTTTTGG-AAGTTTGAGGGCAAAAATGTAATTTTTT-GAA-AATCAGGGT
65 GGTAATTTTTGGAAAAATCGAGGGCAAAAATG-AATTTTTTGGAAGAATAAGGGT
* * * *
51421257 CAAAAATA-TAATTTTGGAGAAGTTTGAGGGGTCAAAATGTAATTTTTAGATAGTTCAGGG
1 --AAAATAGTAATTTTGGAGAAATTTGA-GGTTAAAAATGGAA-TTTTAGATAGTTCAGGG
51421317 ACCTCTAATG
Statistics
Matches: 144, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
114 6 0.04
115 26 0.18
116 57 0.40
117 41 0.28
118 14 0.10
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (118 bp):
AAAATAGTAATTTTGGAGAAATTTGAGGTTAAAAATGGAATTTTAGATAGTTCAGGGGTAAAATG
GTAATTTTTGGAAAAATCGAGGGCAAAAATGAATTTTTTGGAAGAATAAGGGT
Found at i:51423132 original size:6 final size:6
Alignment explanation
Indices: 51423121--51423190 Score: 81
Period size: 6 Copynumber: 11.8 Consensus size: 6
51423111 TATAATAAGT
* **
51423121 TTTAAA TTTAAA TATAAA TTTAAA TTTAAA TTTAAA TTTTAAA -ACAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA -TTTAAA TTTAAA
*
51423169 TTTAAA TTTAAA -ATAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAA
51423191 TCTTAAAATA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
5 7 0.13
6 40 0.75
7 6 0.11
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:51423142 original size:18 final size:17
Alignment explanation
Indices: 51423129--51423209 Score: 92
Period size: 17 Copynumber: 4.6 Consensus size: 17
51423119 GTTTTAAATT
* *
51423129 TAAATATAAATTTAAATT
1 TAAATTTAAATTTAAA-A
51423147 TAAATTTAAATTTTAAAA
1 TAAATTTAAA-TTTAAAA
*
51423165 CAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
51423182 TAAATTT-AATCTTAAAA
1 TAAATTTAAAT-TTAAAA
51423199 TAAATCTTAAA
1 TAAAT-TTAAA
51423210 AATGGGTTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
16 3 0.05
17 24 0.44
18 20 0.36
19 8 0.15
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:51425833 original size:40 final size:38
Alignment explanation
Indices: 51425765--51425899 Score: 96
Period size: 40 Copynumber: 3.4 Consensus size: 38
51425755 ACCAGAATGG
* *
51425765 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAG-AATAAAGTGA
* *
51425805 CACCCAGTGTCTCATCGGCCTAGCCGAAG--TAAAGTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAATAAAGTGA
* * * * *
51425842 TACCCAGTACCTCATCGAATCTATCCGAAGTAA-AATAATGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAG-AATAA-AGTGA
*
51425883 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
51425900 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
37 21 0.28
38 9 0.12
40 24 0.32
41 20 0.27
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAATAAAGTGA
Found at i:51425897 original size:41 final size:38
Alignment explanation
Indices: 51425797--51425900 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 38
51425787 TTCGAAGCAA
* *
51425797 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
* ** ** * *
51425834 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
51425872 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AATGACACCCAGTGTCTCATCGA
51425901 CTCGAGGTCG
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 21 0.41
38 10 0.20
40 2 0.04
41 18 0.35
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (38 bp):
TAAAATGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:51426214 original size:22 final size:22
Alignment explanation
Indices: 51426186--51426231 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
51426176 TAAACATATA
51426186 ATATTTCACATATACAATGTTC
1 ATATTTCACATATACAATGTTC
*
51426208 ATATTTCACATATACATTGTTC
1 ATATTTCACATATACAATGTTC
51426230 AT
1 AT
51426232 CACATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.43
Consensus pattern (22 bp):
ATATTTCACATATACAATGTTC
Found at i:51438560 original size:80 final size:80
Alignment explanation
Indices: 51438427--51438584 Score: 280
Period size: 80 Copynumber: 2.0 Consensus size: 80
51438417 GTTTCTCAAC
* *
51438427 AATGGAAGTATGGCAACTATCAAAGCTAACCCACCATACGTCAATAAATAATTAAAGAAGAATGA
1 AATGGAAGAATGGCAACTATCAAAGCTAACCCACCATACATCAATAAATAATTAAAGAAGAATGA
51438492 AAATATATAAATAGG
66 AAATATATAAATAGG
* *
51438507 AATGGATGAATGGCAACTATCAAAGGTAACCCACCATACATCAATAAATAATTAAAGAAGAATGA
1 AATGGAAGAATGGCAACTATCAAAGCTAACCCACCATACATCAATAAATAATTAAAGAAGAATGA
51438572 AAATATATAAATA
66 AAATATATAAATA
51438585 ATTATAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.51, C:0.13, G:0.14, T:0.22
Consensus pattern (80 bp):
AATGGAAGAATGGCAACTATCAAAGCTAACCCACCATACATCAATAAATAATTAAAGAAGAATGA
AAATATATAAATAGG
Found at i:51442435 original size:72 final size:71
Alignment explanation
Indices: 51442318--51442555 Score: 370
Period size: 72 Copynumber: 3.3 Consensus size: 71
51442308 AGGAAAAGTA
51442318 CCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACTCTCCTATAGACAAGGG
1 CCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACTC-CCTATAGACAAGGG
51442383 AATTTGG
65 AATTTGG
* *
51442390 CCATTTAATTGATTTTTTGAAACATCAAACAACTCCAAAGATGATAACTGCCCTATGGACAAGGG
1 CCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACT-CCCTATAGACAAGGG
51442455 AATTTGG
65 AATTTGG
* * * *
51442462 CCGTTTAATTGATTTTCTGAAACATCAAGCAACTTCAAAGATGATAACTCCCCTATCA-ACAATG
1 CCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACT-CCCTAT-AGACAAGG
*
51442526 GAATTTGC
64 GAATTTGG
51442534 CCATTTAATTGATTTTCTGAAA
1 CCATTTAATTGATTTTCTGAAA
51442556 GATGAAGGTG
Statistics
Matches: 153, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
72 152 0.99
73 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (71 bp):
CCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACTCCCTATAGACAAGGGA
ATTTGG
Found at i:51445777 original size:31 final size:30
Alignment explanation
Indices: 51445742--51445877 Score: 98
Period size: 30 Copynumber: 4.6 Consensus size: 30
51445732 TTTAAGTTTA
* * * *
51445742 TTAAAAGTTGGAGAAAAAATTTTTAGGTCTC
1 TTAAAAGTTAGAAAAAAAATTTTT-GGACCC
** *
51445773 TTAAAAGTTAGTTAAAAAAGTTTTGGACCC
1 TTAAAAGTTAGAAAAAAAATTTTTGGACCC
* * **
51445803 TTAAAAGTTAAAAAAAAAATTTTGGGTTCC
1 TTAAAAGTTAGAAAAAAAATTTTTGGACCC
* ** *
51445833 TT-AAAGTTGGTCAAAAAATATTTT-GACCT
1 TTAAAAGTTAGAAAAAAAAT-TTTTGGACCC
51445862 TTAAAAGTTA-AAAAAA
1 TTAAAAGTTAGAAAAAA
51445878 TTGAACTCCT
Statistics
Matches: 79, Mismatches: 24, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
29 21 0.27
30 38 0.48
31 20 0.25
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (30 bp):
TTAAAAGTTAGAAAAAAAATTTTTGGACCC
Found at i:51445893 original size:19 final size:20
Alignment explanation
Indices: 51445869--51445909 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
51445859 CCTTTAAAAG
*
51445869 TTAAAAAAA-TTGAACTCCT
1 TTAAAAAAATTTGAACCCCT
51445888 TTAAAAAAATTTGAACCCCT
1 TTAAAAAAATTTGAACCCCT
51445908 TT
1 TT
51445910 TAACCTTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (20 bp):
TTAAAAAAATTTGAACCCCT
Found at i:51448662 original size:9 final size:8
Alignment explanation
Indices: 51448640--51448686 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
51448630 GTTGTCAACA
51448640 ATATTTTT
1 ATATTTTT
51448648 -TATTTTAT
1 ATATTTT-T
51448656 ATATTTTT
1 ATATTTTT
* *
51448664 AAATTTAT
1 ATATTTTT
51448672 -TATTTTT
1 ATATTTTT
51448679 ATATTTTT
1 ATATTTTT
51448687 TTGAATTGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
7 11 0.34
8 15 0.47
9 6 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
ATATTTTT
Found at i:51448684 original size:15 final size:16
Alignment explanation
Indices: 51448640--51448684 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 16
51448630 GTTGTCAACA
51448640 ATAT-TTTTTAT-TTT
1 ATATATTTTTATATTT
*
51448654 ATATATTTTTAAATTT
1 ATATATTTTTATATTT
51448670 AT-TATTTTTATATTT
1 ATATATTTTTATATTT
51448685 TTTTGAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 4 0.15
15 18 0.67
16 5 0.19
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
ATATATTTTTATATTT
Found at i:51448693 original size:25 final size:24
Alignment explanation
Indices: 51448642--51448686 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
51448632 TGTCAACAAT
*
51448642 ATTTTTTATTTTATATATTTTTAA
1 ATTTATTATTTTATATATTTTTAA
51448666 ATTTATTATTTT-TATATTTTT
1 ATTTATTATTTTATATATTTTT
51448687 TTGAATTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (24 bp):
ATTTATTATTTTATATATTTTTAA
Found at i:51449649 original size:10 final size:10
Alignment explanation
Indices: 51449634--51449659 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
51449624 ATTAATTTTT
51449634 TTGTATCTCA
1 TTGTATCTCA
51449644 TTGTATCTCA
1 TTGTATCTCA
51449654 TTGTAT
1 TTGTAT
51449660 GTATCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.15, G:0.12, T:0.54
Consensus pattern (10 bp):
TTGTATCTCA
Found at i:51453251 original size:6 final size:6
Alignment explanation
Indices: 51453234--51453354 Score: 85
Period size: 6 Copynumber: 21.2 Consensus size: 6
51453224 TTTGGACTTT
* * * * *
51453234 AATTTA AA-TTA ATTTTA AATTTA AA-ATA AATTTA GACTCA AA-TTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* *
51453279 AATTCA AATTTA AAGTTT- AATTTA AATTTA AATTTA AA--TA AATCTA
1 AATTTA AATTTA AA-TTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* * * *
51453325 AATTTA TA-TCA AATTTA ATTTTA AAATTA A
1 AATTTA AATTTA AATTTA AATTTA AATTTA A
51453355 TTAAGAAAGG
Statistics
Matches: 88, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
4 4 0.05
5 18 0.20
6 63 0.72
7 3 0.03
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (6 bp):
AATTTA
Found at i:51453305 original size:18 final size:17
Alignment explanation
Indices: 51453273--51453348 Score: 75
Period size: 17 Copynumber: 4.5 Consensus size: 17
51453263 ATTTAGACTC
*
51453273 AAATTAAATTCAAATTT
1 AAATTTAATTCAAATTT
*
51453290 AAAGTTTAATTTAAATTT
1 AAA-TTTAATTCAAATTT
* *
51453308 AAATTTAAAT-AAATCT
1 AAATTTAATTCAAATTT
51453324 AAATTT-ATATCAAATTT
1 AAATTTAAT-TCAAATTT
*
51453341 AATTTTAA
1 AAATTTAA
51453349 AATTAATTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
15 1 0.02
16 12 0.25
17 19 0.40
18 16 0.33
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (17 bp):
AAATTTAATTCAAATTT
Found at i:51453326 original size:16 final size:16
Alignment explanation
Indices: 51453234--51453349 Score: 70
Period size: 17 Copynumber: 6.5 Consensus size: 16
51453224 TTTGGACTTT
*
51453234 AATTTAAATTAATTTTA
1 AATTTAAA-TAAATTTA
51453251 AATTTAAAATAAATTTAGA
1 AATTT-AAATAAATTT--A
*
51453270 CTCAAATTAAATTCAAATTTA
1 ---AATTTAAA-T-AAATTTA
*
51453291 AAGTTTAATTTAAATTTA
1 AA-TTTAA-ATAAATTTA
*
51453309 AATTTAAATAAATCTA
1 AATTTAAATAAATTTA
*
51453325 AATTTATATCAAATTTA
1 AATTTAAAT-AAATTTA
*
51453342 ATTTTAAA
1 AATTTAAA
51453350 ATTAATTAAG
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
16 15 0.19
17 28 0.36
18 14 0.18
19 6 0.08
21 4 0.05
22 5 0.06
23 6 0.08
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (16 bp):
AATTTAAATAAATTTA
Found at i:51460790 original size:19 final size:19
Alignment explanation
Indices: 51460766--51460808 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
51460756 AAACATAAAT
51460766 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
51460785 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
51460804 TAAAT
1 TAAAT
51460809 CCTAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:51462381 original size:23 final size:22
Alignment explanation
Indices: 51462327--51462381 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 22
51462317 TTTCCTGGAC
51462327 AAATAAAAAAAATAAAATAGAA
1 AAATAAAAAAAATAAAATAGAA
*
51462349 AAA-AACAAAAATATAAATATAGTA
1 AAATAA-AAAAA-ATAAA-ATAGAA
51462373 AAATAAAAA
1 AAATAAAAA
51462382 TAATTGGGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 2 0.07
22 8 0.29
23 5 0.18
24 11 0.39
25 2 0.07
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (22 bp):
AAATAAAAAAAATAAAATAGAA
Found at i:51466662 original size:19 final size:19
Alignment explanation
Indices: 51466638--51466680 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
51466628 AAACATAAAT
51466638 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
51466657 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
51466676 TAAAT
1 TAAAT
51466681 CCTAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:51471216 original size:50 final size:51
Alignment explanation
Indices: 51471153--51471300 Score: 135
Period size: 51 Copynumber: 2.9 Consensus size: 51
51471143 TTGTTTAATT
* * *
51471153 TTTTATTTCAAATCTAATATTTTAAATAAATATTCATATTTATTTA-ATGTGA
1 TTTTA-TTGAAATCTAATATTTTAAATAAATATTAATATTTATTTATAT-TAA
* * *
51471205 TTTCT-TT-AAATCTAATGGTTTTATATAAATATAAATATTTATTTATATTAA
1 TTT-TATTGAAATCTAAT-ATTTTAAATAAATATTAATATTTATTTATATTAA
* * *
51471256 TTTTATTGAAATCT--TCTCTTAATATAAATATTTATATTTATTTAT
1 TTTTATTGAAATCTAATATTTTAA-ATAAATATTAATATTTATTTAT
51471301 GTTCGCTGAC
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
49 4 0.05
50 31 0.39
51 33 0.41
52 11 0.14
53 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.54
Consensus pattern (51 bp):
TTTTATTGAAATCTAATATTTTAAATAAATATTAATATTTATTTATATTAA
Found at i:51485738 original size:11 final size:12
Alignment explanation
Indices: 51485720--51485754 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
51485710 AATTCGGTCA
51485720 ACCCATTGACCG
1 ACCCATTGACCG
51485732 A-CCATTGACCCG
1 ACCCATTGA-CCG
51485744 ACCCATTGACC
1 ACCCATTGACC
51485755 ATTGACCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 7 0.33
12 7 0.33
13 7 0.33
ACGTcount: A:0.26, C:0.43, G:0.14, T:0.17
Consensus pattern (12 bp):
ACCCATTGACCG
Found at i:51485751 original size:13 final size:13
Alignment explanation
Indices: 51485720--51485754 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
51485710 AATTCGGTCA
51485720 ACCCATTGA-CCG
1 ACCCATTGACCCG
51485732 A-CCATTGACCCG
1 ACCCATTGACCCG
51485744 ACCCATTGACC
1 ACCCATTGACC
51485755 ATTGACCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 5 0.24
13 9 0.43
ACGTcount: A:0.26, C:0.43, G:0.14, T:0.17
Consensus pattern (13 bp):
ACCCATTGACCCG
Found at i:51485772 original size:13 final size:14
Alignment explanation
Indices: 51485756--51485784 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
51485746 CCATTGACCA
51485756 TTGACC-GTTGACT
1 TTGACCTGTTGACT
51485769 TTGACCTGTTGACT
1 TTGACCTGTTGACT
51485783 TT
1 TT
51485785 TTTTGAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.45
Consensus pattern (14 bp):
TTGACCTGTTGACT
Found at i:51486960 original size:13 final size:13
Alignment explanation
Indices: 51486942--51486971 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51486932 ATTTGGGAGA
*
51486942 TTATTTATTTTAT
1 TTATTTACTTTAT
51486955 TTATTTACTTTAT
1 TTATTTACTTTAT
51486968 TTAT
1 TTAT
51486972 GAATTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (13 bp):
TTATTTACTTTAT
Found at i:51489497 original size:17 final size:16
Alignment explanation
Indices: 51489458--51489490 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51489448 GACGATTAAG
51489458 AATATCTTATTAAAAA
1 AATATCTTATTAAAAA
51489474 AATATCTTATTAAAAA
1 AATATCTTATTAAAAA
51489490 A
1 A
51489491 TTAATCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (16 bp):
AATATCTTATTAAAAA
Found at i:51491275 original size:20 final size:20
Alignment explanation
Indices: 51491226--51491275 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
51491216 CTGCCTAGAC
*
51491226 CATGTCTGGTATTGCTCGATG
1 CATG-CTGGTACTGCTCGATG
*
51491247 C-TTCTTGGTACTGCTCGATG
1 CATGC-TGGTACTGCTCGATG
51491267 CATGCTGGT
1 CATGCTGGT
51491276 GCAGCTGGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.12, C:0.22, G:0.28, T:0.38
Consensus pattern (20 bp):
CATGCTGGTACTGCTCGATG
Found at i:51494033 original size:32 final size:32
Alignment explanation
Indices: 51493997--51494062 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
51493987 AAAATAAGGG
*
51493997 AATAACCCTTTTCTAACAATTGACCAACACTC
1 AATAACCATTTTCTAACAATTGACCAACACTC
* * *
51494029 AATAACCATTTTTTAATAATTGACCAATACTC
1 AATAACCATTTTCTAACAATTGACCAACACTC
51494061 AA
1 AA
51494063 CAGGTTTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (32 bp):
AATAACCATTTTCTAACAATTGACCAACACTC
Found at i:51499637 original size:31 final size:30
Alignment explanation
Indices: 51499599--51499698 Score: 116
Period size: 29 Copynumber: 3.4 Consensus size: 30
51499589 TTAATATAAT
*
51499599 ATTTGGTACTTGAACTTGACACTTTTTCTTA
1 ATTTGGTACCTGAACTTGACA-TTTTTCTTA
** **
51499630 ATTTGGTACCTGAACTT--TTTTTTTACCCA
1 ATTTGGTACCTGAACTTGACATTTTT-CTTA
51499659 ATTTGGTACCTGAACTTGACATTTTT-TTA
1 ATTTGGTACCTGAACTTGACATTTTTCTTA
51499688 ATTTGGTACCT
1 ATTTGGTACCT
51499699 AAGCTTTTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
28 5 0.09
29 31 0.54
31 21 0.37
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTTGGTACCTGAACTTGACATTTTTCTTA
Found at i:51499709 original size:60 final size:57
Alignment explanation
Indices: 51499599--51499726 Score: 163
Period size: 60 Copynumber: 2.2 Consensus size: 57
51499589 TTAATATAAT
* *
51499599 ATTTGGTACTTGAACTTGACACTTTTTCTTAATTTGGTACCTGAACTTTTTTTTTACCCA
1 ATTTGGTACCTGAACTTGACACTTTTTCTTAATTTGGTACCTGAACTTTTTTATT---CA
51499659 ATTTGGTACCTGAACTTGACA-TTTTT-TTAATTTGGTACCT-AAGCTTTTTTTTATTCA
1 ATTTGGTACCTGAACTTGACACTTTTTCTTAATTTGGTACCTGAA-C--TTTTTTATTCA
51499716 ATTTGGTACCT
1 ATTTGGTACCT
51499727 AAATTTATTA
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
57 15 0.24
58 15 0.24
59 5 0.08
60 28 0.44
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.49
Consensus pattern (57 bp):
ATTTGGTACCTGAACTTGACACTTTTTCTTAATTTGGTACCTGAACTTTTTTATTCA
Found at i:51500009 original size:31 final size:31
Alignment explanation
Indices: 51499974--51500078 Score: 117
Period size: 31 Copynumber: 3.4 Consensus size: 31
51499964 TTAAAAGTTT
51499974 AAGTGTCAAGTTTAGGTACCAAATTAGGAAA
1 AAGTGTCAAGTTTAGGTACCAAATTAGGAAA
**
51500005 AAGTGTCAAGTTTAAATACCAAATT-GGACCAA
1 AAGTGTCAAGTTTAGGTACCAAATTAGGA--AA
***
51500037 AAG-AAAAAGTTTAGGTACCAAATTAGGAAA
1 AAGTGTCAAGTTTAGGTACCAAATTAGGAAA
51500067 ATA-TGTCAAGTT
1 A-AGTGTCAAGTT
51500079 CAAATACCAA
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
30 6 0.10
31 45 0.76
32 8 0.14
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (31 bp):
AAGTGTCAAGTTTAGGTACCAAATTAGGAAA
Found at i:51500087 original size:31 final size:30
Alignment explanation
Indices: 51499977--51500090 Score: 106
Period size: 31 Copynumber: 3.7 Consensus size: 30
51499967 AAAGTTTAAG
**
51499977 TGTCAAGTTTAGGTACCAAATTAGGAAAAA
1 TGTCAAGTTTAAATACCAAATTAGGAAAAA
51500007 GTGTCAAGTTTAAATACCAAATT-GGACCAAAA
1 -TGTCAAGTTTAAATACCAAATTAGGA--AAAA
** **
51500039 -GAAAAAGTTTAGGTACCAAATTAGGAAAATA
1 TG-TCAAGTTTAAATACCAAATTAGGAAAA-A
*
51500070 TGTCAAGTTCAAATACCAAAT
1 TGTCAAGTTTAAATACCAAAT
51500091 ATTATATTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
30 7 0.11
31 51 0.77
32 8 0.12
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (30 bp):
TGTCAAGTTTAAATACCAAATTAGGAAAAA
Found at i:51501591 original size:23 final size:24
Alignment explanation
Indices: 51501551--51501595 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
51501541 ATAATATATT
*
51501551 ATATTTATATATGAAAATAATTTG
1 ATATTTATATACGAAAATAATTTG
51501575 ATATTTATATACG-AAATAATT
1 ATATTTATATACGAAAATAATT
51501596 AATTGAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (24 bp):
ATATTTATATACGAAAATAATTTG
Found at i:51507818 original size:54 final size:55
Alignment explanation
Indices: 51507758--51507877 Score: 154
Period size: 55 Copynumber: 2.2 Consensus size: 55
51507748 CATATGCACA
* * * *
51507758 TATTTTTATTTATTTTTTAAA-TAAAATATTAAATTACTC-TTGAATAATATAACT
1 TATTTTTATTAATTTTTTAAACAAAAATATTAAAGTAC-CATCGAATAATATAACT
**
51507812 TATTTTTATTAATTTTTTAAACAAAAATATTAAAGTACCATCGAATAATATAGTT
1 TATTTTTATTAATTTTTTAAACAAAAATATTAAAGTACCATCGAATAATATAACT
*
51507867 TATTTTAATTA
1 TATTTTTATTA
51507878 CGGAATGATA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
54 21 0.37
55 36 0.63
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (55 bp):
TATTTTTATTAATTTTTTAAACAAAAATATTAAAGTACCATCGAATAATATAACT
Found at i:51508338 original size:137 final size:138
Alignment explanation
Indices: 51508092--51508485 Score: 426
Period size: 137 Copynumber: 2.9 Consensus size: 138
51508082 AAAGCAAGAT
*
51508092 AACAGAAGAGCATCAAAATTCAAAAGCAAATGTCCCTACT-TCCACTCCCACCTCCCATGATCTT
1 AACAGAAGAGCATCAAAATTCAAAAGCAAATGTCCCCACTCT-CACTCCCACCTCCCATGATCTT
* *
51508156 CGTTTCTCCTTTCCCATTTAAAGTATTCTCCAACTTCCAACTCATTGCCTCATATA-GGGTCAGC
65 CGTTTCTCCTTTCCCATTCAAAGTATTCTCCAACTTCCAACTCATTGCCTCATATAGGGGTCAAC
51508220 GTTTC-ATCC
130 G-TTCGATCC
* * ** * *
51508229 AACAGAAGAGCATCAAAATTCAGAAGCAAAGGTCCCCACTCTCA-TGTTCACCTCCCATTATTTT
1 AACAGAAGAGCATCAAAATTCAAAAGCAAATGTCCCCACTCTCACT-CCCACCTCCCATGATCTT
* * * * * *
51508293 C-TTTATTCGTTT-CCATTCAAAGTATTCTTTCAACTTTCTACTCATTGCCTCATATAGGGGTGA
65 CGTTT-CTCCTTTCCCATTCAAAGTATTC-TCCAACTTCCAACTCATTGCCTCATATAGGGGTCA
*
51508356 ACGTTCGATCG
128 ACGTTCGATCC
* * * *
51508367 AACAGAAGAGTATCAAAATTCAAAAGAAAATGT-CCCACTCTCACTCCCACCTCCCATGATTTTT
1 AACAGAAGAGCATCAAAATTCAAAAGCAAATGTCCCCACTCTCACTCCCACCTCCCATGATCTTC
** ** * * * *
51508431 GTCACTCGGTTCCCATTAAAAGAATTC-CTCAACTTCCAGCTCATTGCCCCATATA
66 GTTTCTCCTTTCCCATTCAAAGTATTCTC-CAACTTCCAACTCATTGCCTCATATA
51508486 AGAGTGGGCA
Statistics
Matches: 212, Mismatches: 35, Indels: 20
0.79 0.13 0.07
Matches are distributed among these distances:
136 18 0.08
137 139 0.66
138 55 0.26
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.30
Consensus pattern (138 bp):
AACAGAAGAGCATCAAAATTCAAAAGCAAATGTCCCCACTCTCACTCCCACCTCCCATGATCTTC
GTTTCTCCTTTCCCATTCAAAGTATTCTCCAACTTCCAACTCATTGCCTCATATAGGGGTCAACG
TTCGATCC
Found at i:51509937 original size:6 final size:6
Alignment explanation
Indices: 51509926--51509955 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
51509916 GAAAATTATA
51509926 ATATTT ATATTT ATATTT ATATTT ATATTT
1 ATATTT ATATTT ATATTT ATATTT ATATTT
51509956 TTAAATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
ATATTT
Found at i:51512523 original size:29 final size:29
Alignment explanation
Indices: 51512358--51512786 Score: 133
Period size: 29 Copynumber: 14.8 Consensus size: 29
51512348 CCCTAAACAG
* *
51512358 TCCAAAAATT-GCATTTTGACCCCAAAATT
1 TCCAAAAATTACCATTTT-ACCCCAAACTT
* * *
51512387 T-TAGGAAATTA-CATTCTGACCCCGAAAC-T
1 TCCA-AAAATTACCATT-TTACCCC-AAACTT
*
51512416 TCCAAAAATTACCATTTTACCCCCGAACTT
1 TCCAAAAATTACCATTTTA-CCCCAAACTT
51512446 TCC-AAAATT-CCATTTTAACCCC-AA-TT
1 TCCAAAAATTACCATTTT-ACCCCAAACTT
51512472 TCACCAAAAATTACCA-TTTACCCCTAAACTT
1 T--CCAAAAATTACCATTTTACCCC-AAACTT
* *
51512503 TCC-AAAATT-TCATTTTAACCCC-GA-TT
1 TCCAAAAATTACCATTTT-ACCCCAAACTT
* * * *
51512529 TCACCAAAAAATACTATTTTACCCCTGAACTC
1 T--CCAAAAATTACCATTTTACCCC-AAACTT
* * * *
51512561 T-C-TAAATTTCCATTTTTAACCTC-GA-TT
1 TCCAAAAATTACCA-TTTT-ACCCCAAACTT
* * *
51512588 TCACCAAAAAATACCATTTTATCCCGAACTT
1 T--CCAAAAATTACCATTTTACCCCAAACTT
* * *
51512619 ACC-AAAATT-CCATTTTTAACCCTAA-TT
1 TCCAAAAATTACCA-TTTTACCCCAAACTT
51512646 T-CATCAAAATTACCATTTTACCCCTAAACTT
1 TCCA--AAAATTACCATTTTACCCC-AAACTT
* *
51512677 TCC-AAAATT-CCATTTTTAACCTC-GA-TT
1 TCCAAAAATTACCA-TTTT-ACCCCAAACTT
* *
51512704 TCACCAAAAATTACCATTTTACCCTCTAACTC
1 T--CCAAAAATTACCATTTTACCC-CAAACTT
*
51512736 T-CAAAAATT-CCATTTTTAACCCC-GA-TT
1 TCCAAAAATTACCA-TTTT-ACCCCAAACTT
* *
51512763 TCACCAAAATTACCATTTTGCCCC
1 TC-CAAAAATTACCATTTTACCCC
51512787 CGGGTATCCA
Statistics
Matches: 301, Mismatches: 44, Indels: 111
0.66 0.10 0.24
Matches are distributed among these distances:
26 7 0.02
27 17 0.06
28 64 0.21
29 124 0.41
30 64 0.21
31 20 0.07
32 5 0.02
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.34
Consensus pattern (29 bp):
TCCAAAAATTACCATTTTACCCCAAACTT
Found at i:51512595 original size:59 final size:59
Alignment explanation
Indices: 51512417--51512786 Score: 493
Period size: 58 Copynumber: 6.4 Consensus size: 59
51512407 CCCGAAACTT
* *
51512417 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCA-TTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
51512475 CCAAAAATTACCA-TTTACCCCTAAACTTTCCAAAATTTCA-TTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * * *
51512532 CCAAAAAATACTATTTTACCCCTGAACTCTCTAAATTTCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * **
51512591 CCAAAAAATACCATTTTATCCC-GAACTTACCAAAATTCCATTTTTAACCCTAATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
51512649 TC-AAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
51512707 CCAAAAATTACCATTTTACCCTCT-AACTCTCAAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCC-CTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
*
51512766 CC-AAAATTACCATTTTGCCCC
1 CCAAAAATTACCATTTTACCCC
51512787 CGGGTATCCA
Statistics
Matches: 273, Mismatches: 34, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
57 69 0.25
58 114 0.42
59 88 0.32
60 2 0.01
ACGTcount: A:0.34, C:0.30, G:0.02, T:0.34
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:51512788 original size:29 final size:29
Alignment explanation
Indices: 51512420--51512781 Score: 195
Period size: 29 Copynumber: 12.5 Consensus size: 29
51512410 GAAACTTCCA
*
51512420 AAAATTACCATTTTACCCCCGAACTTT--CC
1 AAAATTACCATTTTAACCCCG-A-TTTCACC
*
51512449 AAAATT-CCATTTTAACCCCAATTTCACC
1 AAAATTACCATTTTAACCCCGATTTCACC
*
51512477 AAAAATTACCA-TTT-ACCCCTAAACTTT--CC
1 -AAAATTACCATTTTAACCCC--GA-TTTCACC
*
51512506 AAAATT-TCATTTTAACCCCGATTTCACC
1 AAAATTACCATTTTAACCCCGATTTCACC
* * ** *
51512534 AAAAAATACTATTTT-ACCCCTGAACTC-TC
1 -AAAATTACCATTTTAACCCC-GATTTCACC
* * *
51512563 TAAATTTCCATTTTTAACCTCGATTTCACC
1 AAAATTACCA-TTTTAACCCCGATTTCACC
* * *
51512593 AAAAAATACCATTTT-ATCCCGAACTT-ACC
1 -AAAATTACCATTTTAACCCCG-ATTTCACC
** *
51512622 AAAATT-CCATTTTTAACCCTAATTTCATC
1 AAAATTACCA-TTTTAACCCCGATTTCACC
*
51512651 AAAATTACCATTTT-ACCCCTAAACTTT--CC
1 AAAATTACCATTTTAACCCC--GA-TTTCACC
*
51512680 AAAATT-CCATTTTTAACCTCGATTTCACC
1 AAAATTACCA-TTTTAACCCCGATTTCACC
* ** * *
51512709 AAAAATTACCATTTT-ACCCTCTAACTCTCA
1 -AAAATTACCATTTTAACCC-CGATTTCACC
51512739 AAAATT-CCATTTTTAACCCCGATTTCACC
1 AAAATTACCA-TTTTAACCCCGATTTCACC
51512768 AAAATTACCATTTT
1 AAAATTACCATTTT
51512782 GCCCCCGGGT
Statistics
Matches: 252, Mismatches: 45, Indels: 72
0.68 0.12 0.20
Matches are distributed among these distances:
26 6 0.02
27 10 0.04
28 59 0.23
29 104 0.41
30 57 0.23
31 16 0.06
ACGTcount: A:0.35, C:0.29, G:0.02, T:0.35
Consensus pattern (29 bp):
AAAATTACCATTTTAACCCCGATTTCACC
Found at i:51517601 original size:60 final size:60
Alignment explanation
Indices: 51517465--51517699 Score: 337
Period size: 60 Copynumber: 3.9 Consensus size: 60
51517455 TCATTTGGTA
* * * *
51517465 ACTCACGATGACATAGAGTCATTAGACCT-ATAATCTGTAATAAGATTCATTTCTCATTTAAT
1 ACTCACGATGACACATAGTCATTGGACCTCATAATCCGTAA-AAGATTCA-TT-TCATTTAAT
* * * * * *
51517527 ACTCACGTTAACACATAGTGATCGGACCTCATAATCCATAAAGGATTCATTTCATTTAAT
1 ACTCACGATGACACATAGTCATTGGACCTCATAATCCGTAAAAGATTCATTTCATTTAAT
51517587 ACTCACGATGACACATAGTCATTGGACCTCATAATCCGTAAAAGATTCATTTCATTTAAT
1 ACTCACGATGACACATAGTCATTGGACCTCATAATCCGTAAAAGATTCATTTCATTTAAT
*
51517647 ACTCACGATGACACATAGTCATTGGATCTCATAATCCGTAAAAGATTCATTTC
1 ACTCACGATGACACATAGTCATTGGACCTCATAATCCGTAAAAGATTCATTTC
51517700 GCTCAAAGCC
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
60 115 0.74
61 2 0.01
62 29 0.19
63 9 0.06
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (60 bp):
ACTCACGATGACACATAGTCATTGGACCTCATAATCCGTAAAAGATTCATTTCATTTAAT
Found at i:51517697 original size:28 final size:28
Alignment explanation
Indices: 51517605--51517697 Score: 69
Period size: 28 Copynumber: 3.2 Consensus size: 28
51517595 TGACACATAG
*
51517605 TCATTGGACCTCATAATCCGTAAAAGAT
1 TCATTGGATCTCATAATCCGTAAAAGAT
** * * * * * *
51517633 TCATTTCATTTAATACTCACGATGACACATAG
1 TCATTGGATCTCATAATC-CG-T-A-AAAGAT
51517665 TCATTGGATCTCATAATCCGTAAAAGAT
1 TCATTGGATCTCATAATCCGTAAAAGAT
51517693 TCATT
1 TCATT
51517698 TCGCTCAAAG
Statistics
Matches: 44, Mismatches: 17, Indels: 8
0.64 0.25 0.12
Matches are distributed among these distances:
28 20 0.45
29 3 0.07
30 2 0.05
31 3 0.07
32 16 0.36
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (28 bp):
TCATTGGATCTCATAATCCGTAAAAGAT
Found at i:51531321 original size:21 final size:21
Alignment explanation
Indices: 51531297--51531339 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
51531287 TATCAATACT
*
51531297 CCTATAACAGAACTACCGATA
1 CCTATAACACAACTACCGATA
* *
51531318 CCTATTATACAACTACCGATA
1 CCTATAACACAACTACCGATA
51531339 C
1 C
51531340 AACTCAAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.30, G:0.07, T:0.23
Consensus pattern (21 bp):
CCTATAACACAACTACCGATA
Found at i:51533690 original size:17 final size:17
Alignment explanation
Indices: 51533668--51533708 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
51533658 ATTACTTATG
51533668 GGAATGTAACTCTCGAC
1 GGAATGTAACTCTCGAC
51533685 GGAATGTAACTCTCGAC
1 GGAATGTAACTCTCGAC
51533702 GGAATGT
1 GGAATGT
51533709 TACATTCCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (17 bp):
GGAATGTAACTCTCGAC
Found at i:51535067 original size:21 final size:22
Alignment explanation
Indices: 51535022--51535081 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
51535012 CATAATAATT
51535022 AAATAAGAACAAAACAGTGGGA
1 AAATAAGAACAAAACAGTGGGA
* *
51535044 AAATAATAGCAAAACAGT-GGA
1 AAATAAGAACAAAACAGTGGGA
51535065 AAA-ACAGCAACAAAACA
1 AAATA-AG-AACAAAACA
51535082 ATTTTTTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 7 0.22
22 24 0.75
ACGTcount: A:0.62, C:0.13, G:0.17, T:0.08
Consensus pattern (22 bp):
AAATAAGAACAAAACAGTGGGA
Found at i:51541217 original size:11 final size:11
Alignment explanation
Indices: 51541203--51541282 Score: 65
Period size: 11 Copynumber: 7.1 Consensus size: 11
51541193 AACTAAACCC
51541203 ATTTTAAATTT
1 ATTTTAAATTT
*
51541214 ATTTTAACTTT
1 ATTTTAAATTT
*
51541225 AAATTT-AATTT
1 -ATTTTAAATTT
*
51541236 AAGTTT-AATTT
1 -ATTTTAAATTT
*
51541247 AAGTTTAAATTT
1 -ATTTTAAATTT
51541259 ATTTTTAAATTT
1 A-TTTTAAATTT
*
51541271 ATTATAAATTT
1 ATTTTAAATTT
51541282 A
1 A
51541283 ATAAAAATCC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
11 41 0.68
12 19 0.32
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (11 bp):
ATTTTAAATTT
Found at i:51541227 original size:17 final size:17
Alignment explanation
Indices: 51541205--51541259 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
51541195 CTAAACCCAT
*
51541205 TTTAAATTTATTTTAAC
1 TTTAAATTTAATTTAAC
*
51541222 TTTAAATTTAATTTAAG
1 TTTAAATTTAATTTAAC
*
51541239 TTT-AATTTAAGTTTAAA
1 TTTAAATTTAA-TTTAAC
51541256 TTTA
1 TTTA
51541260 TTTTTAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
16 7 0.21
17 26 0.79
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (17 bp):
TTTAAATTTAATTTAAC
Found at i:51541271 original size:6 final size:6
Alignment explanation
Indices: 51541205--51541283 Score: 60
Period size: 6 Copynumber: 13.8 Consensus size: 6
51541195 CTAAACCCAT
* * * *
51541205 TTTAAA TTT-AT TTTAAC TTTAAA TTT-AA TTTAAG TTT-AA TTTAAG
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
**
51541250 TTTAAA TTTATT TTTAAA TTT--A TTATAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAA
51541284 TAAAAATCCA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
4 3 0.05
5 14 0.25
6 36 0.64
7 3 0.05
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:51544715 original size:59 final size:58
Alignment explanation
Indices: 51544619--51544988 Score: 310
Period size: 59 Copynumber: 6.3 Consensus size: 58
51544609 CCCTAAACTA
* * * * *
51544619 TCCAAAAATTA-CATTTTGACCCCAAAAC-TTCAAAAAATTACA-TTTTAACCCCGAAACT
1 TCCAAAAATTACCATTTT-ACCCCCAAACTTTC-CAAAATTCCATTTTTGACCCCG-AATT
*
51544677 TCCAAAAATTACCATTTTACCCCCCAAACTTTCCAAAATTCCATTTTTGACCCTG-ATT
1 TCCAAAAATTACCATTTTA-CCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGAATT
* * * *
51544735 TCACCAAAATTTACCATTTTACCCCTAAACTTTCCAAATTTCCATTTTTGACCTCG-ATT
1 T--CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGAATT
* * * *
51544794 TCACCAAAATTCACCATTTTACCCCTAAACTTTCCAAAATTCTA-TTTTGA-CCCTAATT
1 TC-CAAAAATT-ACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGAATT
* * * * * **
51544852 TCACTAAAAATTACCATTTTACCCTCGAACTTTCTAAAATTCAATTTTTGGCATCG-ATT
1 TC-C-AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGAATT
* * * * *
51544911 TCACCAAAAATTACCATTTTACCCCCGAACCTTCCAAAATCCCATTTTTAACCCCAAATTTT
1 T--CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGAA--TT
51544973 TCC-AAAATTA-CATTTT
1 TCCAAAAATTACCATTTT
51544989 TGCCCTCGAA
Statistics
Matches: 258, Mismatches: 37, Indels: 34
0.78 0.11 0.10
Matches are distributed among these distances:
57 3 0.01
58 67 0.26
59 150 0.58
60 34 0.13
61 1 0.00
62 3 0.01
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.35
Consensus pattern (58 bp):
TCCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGAATT
Found at i:51544741 original size:29 final size:30
Alignment explanation
Indices: 51544709--51544871 Score: 98
Period size: 30 Copynumber: 5.5 Consensus size: 30
51544699 CCCAAACTTT
51544709 CCAAAATTCCATTTTTGACCCT-GATTTCA
1 CCAAAATTCCATTTTTGACCCTAGATTTCA
*
51544738 CCAAAATTTACCA-TTTT-ACCCCTAAACTTT--
1 CCAAAA-TT-CCATTTTTGA-CCCTAGA-TTTCA
* *
51544768 CCAAATTTCCATTTTTGA-CCTCGATTTCA
1 CCAAAATTCCATTTTTGACCCTAGATTTCA
*
51544797 CCAAAATTCACCA-TTTT-ACCCCTAAACTTT--
1 CCAAAATT--CCATTTTTGA-CCCTAGA-TTTCA
*
51544827 CCAAAATTCTA-TTTTGACCCTA-ATTTCA
1 CCAAAATTCCATTTTTGACCCTAGATTTCA
*
51544855 CTAAAAATTACCATTTT
1 C-CAAAATT-CCATTTT
51544872 ACCCTCGAAC
Statistics
Matches: 104, Mismatches: 10, Indels: 38
0.68 0.07 0.25
Matches are distributed among these distances:
26 3 0.03
27 4 0.04
28 19 0.18
29 28 0.27
30 30 0.29
31 14 0.13
32 6 0.06
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (30 bp):
CCAAAATTCCATTTTTGACCCTAGATTTCA
Found at i:51544831 original size:30 final size:29
Alignment explanation
Indices: 51544609--51544892 Score: 157
Period size: 29 Copynumber: 9.7 Consensus size: 29
51544599 GTTTATAGGT
*
51544609 CCCTAAACTATCCAAAAATTA-CATTTTGAC
1 CCCTAAACTTTCC-AAAATTACCATTTT-AC
* *
51544639 CCCAAAAC-TTCAAAAAATTA-CATTTTAAC
1 CCCTAAACTTTC-CAAAATTACCATTTT-AC
*
51544668 CCCGAAAC-TTCCAAAAATTACCATTTTACC
1 CCCTAAACTTTCC-AAAATTACCATTTTA-C
*
51544698 CCCCAAACTTTCCAAAATT-CCATTTTTGA-
1 CCCTAAACTTTCCAAAATTACCA-TTTT-AC
*
51544727 CCCT-GA-TTTCACCAAAATTTACCATTTTAC
1 CCCTAAACTTT--CCAAAA-TTACCATTTTAC
* **
51544757 CCCTAAACTTTCC-AAATTTCCATTTTTG
1 CCCTAAACTTTCCAAAATTACCATTTTAC
* **
51544785 ACCTCGA-TTTCACCAAAATTCACCATTTTAC
1 CCCTAAACTTT--CCAAAATT-ACCATTTTAC
*
51544816 CCCTAAACTTTCCAAAATT-CTATTTTGA-
1 CCCTAAACTTTCCAAAATTACCATTTT-AC
51544844 CCCT-AA-TTTCACTAAAAATTACCATTTTA-
1 CCCTAAACTTTC-C--AAAATTACCATTTTAC
* *
51544873 CCCTCGAACTTTCTAAAATT
1 CCCT-AAACTTTCCAAAATT
51544893 CAATTTTTGG
Statistics
Matches: 202, Mismatches: 25, Indels: 55
0.72 0.09 0.20
Matches are distributed among these distances:
26 4 0.02
27 9 0.04
28 24 0.12
29 71 0.35
30 62 0.31
31 22 0.11
32 10 0.05
ACGTcount: A:0.35, C:0.29, G:0.03, T:0.34
Consensus pattern (29 bp):
CCCTAAACTTTCCAAAATTACCATTTTAC
Found at i:51544870 original size:58 final size:60
Alignment explanation
Indices: 51544678--51544964 Score: 354
Period size: 59 Copynumber: 4.8 Consensus size: 60
51544668 CCCGAAACTT
*
51544678 CCAAAAATTACCATTTTACCCCCCAAACTTTCCAAAATTCCATTTTTGACCCT-GATTTCA
1 CCAAAAATTACCATTTTA-CCCCTAAACTTTCCAAAATTCCATTTTTGACCCTCGATTTCA
* *
51544738 CCAAAATTTACCATTTTACCCCTAAACTTTCCAAATTTCCATTTTTGA-CCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCTCGATTTCA
* *
51544797 CC-AAAATTCACCATTTTACCCCTAAACTTTCCAAAATTCTA-TTTTGACCCT-AATTTCA
1 CCAAAAATT-ACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCTCGATTTCA
* * * * * *
51544855 CTAAAAATTACCATTTTA-CCCTCGAACTTTCTAAAATTCAATTTTTG-GCATCGATTTCA
1 CCAAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTTGACCCTCGATTTCA
** * * *
51544914 CCAAAAATTACCATTTTACCCCCGAACCTTCCAAAATCCCATTTTTAACCC
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCC
51544965 CAAATTTTTC
Statistics
Matches: 195, Mismatches: 23, Indels: 18
0.83 0.10 0.08
Matches are distributed among these distances:
57 4 0.02
58 47 0.24
59 123 0.63
60 21 0.11
ACGTcount: A:0.32, C:0.30, G:0.03, T:0.35
Consensus pattern (60 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCTCGATTTCA
Found at i:51544884 original size:117 final size:118
Alignment explanation
Indices: 51544678--51544964 Score: 391
Period size: 117 Copynumber: 2.4 Consensus size: 118
51544668 CCCGAAACTT
*
51544678 CCAAAAATTACCATTTTACCCCCCAAACTTTCCAAAATTCCATTTTTGACCCTGATTTCACCAAA
1 CCAAAAATTACCATTTTA-CCCCCAAACTTTCCAAAATTCCATTTTTGACCCTAATTTCACCAAA
* * * *
51544743 ATTTACCATTTTACCCCTAAACTTTCCAAATTTCCATTTTTGACCTCGATTTCA
65 AATTACCATTTTACCCCTAAACTTTCCAAAATTCAATTTTTGACATCGATTTCA
* * *
51544797 CC-AAAATTCACCATTTTACCCCTAAACTTTCCAAAATTCTA-TTTTGACCCTAATTTCACTAAA
1 CCAAAAATT-ACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCTAATTTCACCAAA
* * *
51544860 AATTACCATTTTA-CCCTCGAACTTTCTAAAATTCAATTTTTGGCATCGATTTCA
65 AATTACCATTTTACCCCT-AAACTTTCCAAAATTCAATTTTTGACATCGATTTCA
* * * *
51544914 CCAAAAATTACCATTTTACCCCCGAACCTTCCAAAATCCCATTTTTAACCC
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCC
51544965 CAAATTTTTC
Statistics
Matches: 147, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
116 4 0.03
117 91 0.62
118 41 0.28
119 11 0.07
ACGTcount: A:0.32, C:0.30, G:0.03, T:0.35
Consensus pattern (118 bp):
CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCTAATTTCACCAAAA
ATTACCATTTTACCCCTAAACTTTCCAAAATTCAATTTTTGACATCGATTTCA
Found at i:51544890 original size:29 final size:30
Alignment explanation
Indices: 51544614--51545019 Score: 131
Period size: 29 Copynumber: 13.8 Consensus size: 30
51544604 TAGGTCCCTA
* *
51544614 AACTATCCAAAAATTA-CATTTTGACCC-CAA
1 AACTTTCC-AAAATTACCATTTTGACCCTC-G
* *
51544644 AAC-TTCAAAAAATTA-CATTTTAACCC-CG
1 AACTTTC-CAAAATTACCATTTTGACCCTCG
* *
51544672 AAAC-TTCCAAAAATTACCATTTT-ACCCCCCA
1 -AACTTTCC-AAAATTACCATTTTGA-CCCTCG
51544703 AACTTTCCAAAATT-CCATTTTTGACCCT-G
1 AACTTTCCAAAATTACCA-TTTTGACCCTCG
*
51544732 -A-TTTCACCAAAATTTACCATTTT-ACCC-CTA
1 AACTTT--CCAAAA-TTACCATTTTGACCCTC-G
*
51544762 AACTTTCC-AAATTTCCATTTTTGA-CCTCG
1 AACTTTCCAAAATTACCA-TTTTGACCCTCG
*
51544791 -A-TTTCACCAAAATTCACCATTTT-ACCC-CTA
1 AACTTT--CCAAAATT-ACCATTTTGACCCTC-G
*
51544821 AACTTTCCAAAATT-CTATTTTGACCCT--
1 AACTTTCCAAAATTACCATTTTGACCCTCG
51544848 AA-TTTCACTAAAAATTACCATTTT-ACCCTCG
1 AACTTTC-C--AAAATTACCATTTTGACCCTCG
* * * *
51544879 AACTTTCTAAAATT-CAATTTTTG-GCATCG
1 AACTTTCCAAAATTACCA-TTTTGACCCTCG
*
51544908 -A-TTTCACCAAAAATTACCATTTT-ACCCCCG
1 AACTTT--CC-AAAATTACCATTTTGACCCTCG
* * * *
51544938 AACCTTCCAAAA-TCCCATTTTTAACCC-CA
1 AACTTTCCAAAATTACCA-TTTTGACCCTCG
*
51544967 AATTTTTCCAAAATTA-CATTTTTG-CCCTCG
1 AA-CTTTCCAAAATTACCA-TTTTGACCCTCG
** **
51544997 AAAGTTAAAAAATTACCATTTTG
1 AACTTTCCAAAATTACCATTTTG
51545020 CCCCCAGGTA
Statistics
Matches: 288, Mismatches: 36, Indels: 105
0.67 0.08 0.24
Matches are distributed among these distances:
26 4 0.01
27 12 0.04
28 20 0.07
29 118 0.41
30 102 0.35
31 20 0.07
32 12 0.04
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.34
Consensus pattern (30 bp):
AACTTTCCAAAATTACCATTTTGACCCTCG
Found at i:51544987 original size:117 final size:117
Alignment explanation
Indices: 51544678--51544998 Score: 389
Period size: 117 Copynumber: 2.7 Consensus size: 117
51544668 CCCGAAACTT
*
51544678 CCAAAAATTACCATTTTACCCCCCAAACTTTCCAAAATTCCATTTTTGACCCTGATTTCACCAAA
1 CCAAAAATTACCATTTTA-CCCCCAAACTTTCCAAAATTCCATTTTTGACCCTAATTTCACCAAA
* * * *
51544743 ATTTACCATTTTACCC-CTAAACTTTCCAAATTTCCATTTTTGACCTCGATTTCA
65 A-TTACCATTTTACCCTC-GAACTTTCCAAAATTCAATTTTTGACATCGATTTCA
* * *
51544797 CC-AAAATTCACCATTTTACCCCTAAACTTTCCAAAATTCTA-TTTTGACCCTAATTTCACTAAA
1 CCAAAAATT-ACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCTAATTTCAC-CAA
* *
51544860 AATTACCATTTTACCCTCGAACTTTCTAAAATTCAATTTTTGGCATCGATTTCA
64 AATTACCATTTTACCCTCGAACTTTCCAAAATTCAATTTTTGACATCGATTTCA
* * * * * **
51544914 CCAAAAATTACCATTTTACCCCCGAACCTTCCAAAATCCCATTTTTAACCCCAAATTTTTCCAAA
1 CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGA-CCCTAATTTCACCAAA
*
51544979 ATTA-CATTTTTGCCCTCGAA
65 ATTACCA-TTTTACCCTCGAA
51544999 AGTTAAAAAA
Statistics
Matches: 174, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
117 92 0.53
118 62 0.36
119 20 0.11
ACGTcount: A:0.32, C:0.29, G:0.04, T:0.36
Consensus pattern (117 bp):
CCAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCTAATTTCACCAAAA
TTACCATTTTACCCTCGAACTTTCCAAAATTCAATTTTTGACATCGATTTCA
Found at i:51546536 original size:30 final size:28
Alignment explanation
Indices: 51546488--51546599 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 28
51546478 GTTCTAAAAA
* *
51546488 TTTCCAAAATTCCATTTTTTACCCTAATT
1 TTTCAAAAATTAC-TTTTTTACCCTAATT
**
51546517 TTTCTAAAAATTACTTTTTTACCCCTAAAC
1 TTTC-AAAAATTACTTTTTTA-CCCTAATT
* * *
51546547 TTTCCAAAATT-CTATTTTTGACCTTGATT
1 TTTCAAAAATTACT-TTTTT-ACCCTAATT
**
51546576 TTTCCAAAAATTACCATTTTACCC
1 TTT-CAAAAATTACTTTTTTACCC
51546600 CAAACTTCCA
Statistics
Matches: 64, Mismatches: 13, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
28 2 0.03
29 32 0.50
30 29 0.45
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.02, T:0.46
Consensus pattern (28 bp):
TTTCAAAAATTACTTTTTTACCCTAATT
Found at i:51546634 original size:58 final size:58
Alignment explanation
Indices: 51546489--51546794 Score: 306
Period size: 59 Copynumber: 5.3 Consensus size: 58
51546479 TTCTAAAAAT
* * * **
51546489 TTCCAAAATTCCATTTTTTACC-CTAATTTTTCTAAAAATTACTTTTTTACCCCTAAAC
1 TTCCAAAATTCCATTTTTGACCTC-GATTTTTCCAAAAATTACCATTTTACCCCTAAAC
* *
51546547 TTTCCAAAATTCTATTTTTGACCTTGATTTTTCCAAAAATTACCATTTTACCCC-AAAC
1 -TTCCAAAATTCCATTTTTGACCTCGATTTTTCCAAAAATTACCATTTTACCCCTAAAC
51546605 TTCCAAAATTTCCATTTTTGACCTCGA-TTTTCCAAAAATTACCATTTTACCCCTAAAC
1 TTCCAAAA-TTCCATTTTTGACCTCGATTTTTCCAAAAATTACCATTTTACCCCTAAAC
* ** *
51546663 TTCCAAAAATTCCATTTTTGACC-C-CTTTTT--TTAAATTACCATTTTACCCCTGAA-
1 TTCC-AAAATTCCATTTTTGACCTCGATTTTTCCAAAAATTACCATTTTACCCCTAAAC
* ** * * * * *
51546717 TGTCTAAAAATTCCATTTTTGACCTCGAACTTTCCCAAAATTATCATTTTGCCCC-CAAG
1 T-TC-CAAAATTCCATTTTTGACCTCGATTTTTCCAAAAATTACCATTTTACCCCTAAAC
51546776 TGTCCAAAATTACCATTTT
1 T-TCCAAAATT-CCATTTT
51546795 GCCCCTCGGG
Statistics
Matches: 211, Mismatches: 23, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
54 1 0.00
55 41 0.19
56 1 0.00
57 42 0.20
58 50 0.24
59 76 0.36
ACGTcount: A:0.30, C:0.25, G:0.04, T:0.41
Consensus pattern (58 bp):
TTCCAAAATTCCATTTTTGACCTCGATTTTTCCAAAAATTACCATTTTACCCCTAAAC
Found at i:51546640 original size:29 final size:30
Alignment explanation
Indices: 51546547--51546766 Score: 108
Period size: 29 Copynumber: 7.7 Consensus size: 30
51546537 ACCCCTAAAC
* *
51546547 TTTCC-AAAATT-CTATTTTTGACCTTGATT
1 TTTCCAAAAATTACCATTTTTGACCTCGA-T
* * *
51546576 TTTCCAAAAATTACCA-TTTT-ACCCCAAA
1 TTTCCAAAAATTACCATTTTTGACCTCGAT
* *
51546604 CTTCC-AAAATTTCCATTTTTGACCTCGAT
1 TTTCCAAAAATTACCATTTTTGACCTCGAT
* * *
51546633 TTTCCAAAAATTACCA-TTTT-ACCCCTAAA
1 TTTCCAAAAATTACCATTTTTGACCTC-GAT
* *
51546662 CTTCCAAAAATT-CCATTTTTGACC-C-CT
1 TTTCCAAAAATTACCATTTTTGACCTCGAT
*** * *
51546689 TTT-TTTAAATTACCA-TTTT-ACCCCTGAA
1 TTTCCAAAAATTACCATTTTTGACCTC-GAT
* * *
51546717 TGTCTAAAAATT-CCATTTTTGACCTCGAAC
1 TTTCCAAAAATTACCATTTTTGACCTCG-AT
* *
51546747 TTTCCCAAAATTATCATTTT
1 TTTCCAAAAATTACCATTTT
51546767 GCCCCCAAGT
Statistics
Matches: 141, Mismatches: 33, Indels: 32
0.68 0.16 0.16
Matches are distributed among these distances:
25 3 0.02
26 10 0.07
27 14 0.10
28 20 0.14
29 50 0.35
30 36 0.26
31 8 0.06
ACGTcount: A:0.30, C:0.25, G:0.04, T:0.41
Consensus pattern (30 bp):
TTTCCAAAAATTACCATTTTTGACCTCGAT
Found at i:51554303 original size:72 final size:72
Alignment explanation
Indices: 51554227--51554367 Score: 185
Period size: 72 Copynumber: 2.0 Consensus size: 72
51554217 TTCTGGTCCC
* *
51554227 ATTCCATCATCGATAGGGAAGTTGTCATCTTTGGAA-ATCTTTGATGTTTCAAAAAATCAATTAA
1 ATTCCATCATCGATAGGGAAGTTATCATCTTT-GAAGATCTTTGATATTTCAAAAAATCAATTAA
*
51554291 CTGGTCAA
65 ATGGTCAA
** * * * *
51554299 ATTCCATTGTCTATAGGGGAGTTATCATCTTTGAAGTTCTTTGATATTTCAGAAAATCAATTAAA
1 ATTCCATCATCGATAGGGAAGTTATCATCTTTGAAGATCTTTGATATTTCAAAAAATCAATTAAA
51554364 TGGT
66 TGGT
51554368 ACTTTTCCTC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
71 3 0.05
72 56 0.95
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (72 bp):
ATTCCATCATCGATAGGGAAGTTATCATCTTTGAAGATCTTTGATATTTCAAAAAATCAATTAAA
TGGTCAA
Found at i:51555860 original size:14 final size:15
Alignment explanation
Indices: 51555832--51555860 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51555822 TGCGAATAAT
51555832 GGAAGTAGCAGTGAA
1 GGAAGTAGCAGTGAA
51555847 GGAAGTAG-AGTGAA
1 GGAAGTAGCAGTGAA
51555861 TTGGCTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.03, G:0.41, T:0.14
Consensus pattern (15 bp):
GGAAGTAGCAGTGAA
Found at i:51562390 original size:17 final size:17
Alignment explanation
Indices: 51562368--51562400 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51562358 TAATTCTTTA
51562368 AAACTATCG-AACTTACT
1 AAACTAT-GAAACTTACT
51562385 AAACTATGAAACTTAC
1 AAACTATGAAACTTAC
51562401 CAAATATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.27
Consensus pattern (17 bp):
AAACTATGAAACTTACT
Found at i:51562966 original size:21 final size:20
Alignment explanation
Indices: 51562907--51562971 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
51562897 GGAGTTTTTA
**
51562907 GTATCAGTAGAAGTAAAACTT
1 GTATCAGTAGAA-TATCACTT
* *
51562928 GT-TCGGTAGAAGAGTCACTT
1 GTATCAGTAGAATA-TCACTT
51562948 GTATCAGTAGAACTATCACTT
1 GTATCAGTAGAA-TATCACTT
51562969 GTA
1 GTA
51562972 CCGATAGAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 1 0.03
20 14 0.40
21 19 0.54
22 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31
Consensus pattern (20 bp):
GTATCAGTAGAATATCACTT
Found at i:51565546 original size:18 final size:17
Alignment explanation
Indices: 51565517--51565559 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
51565507 AAAATATATA
51565517 AAAAAATC-AAAAATTT
1 AAAAAATCTAAAAATTT
51565533 AAAAAATCTAAAAAATTT
1 AAAAAATCT-AAAAATTT
*
51565551 AAAATATCT
1 AAAAAATCT
51565560 TATAATTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 8 0.33
18 16 0.67
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (17 bp):
AAAAAATCTAAAAATTT
Found at i:51578097 original size:30 final size:30
Alignment explanation
Indices: 51578061--51578290 Score: 203
Period size: 30 Copynumber: 7.7 Consensus size: 30
51578051 TTTTTGAAGA
51578061 TTTAGGGGTAAAATGGTAATTTT-GAAAAGT
1 TTTAGGGGTAAAAT-GTAATTTTGGAAAAGT
*
51578091 TTTA-GGGTCAAAATCTAATTTTGGAAAAG-
1 TTTAGGGGT-AAAATGTAATTTTGGAAAAGT
* **
51578120 TATAGGGGTTAAAATGTAATTTTCAAAAAGT
1 TTTAGGGG-TAAAATGTAATTTTGGAAAAGT
* *
51578151 TTT-GGGGT-CAATATAATTTTGGAAAAG-
1 TTTAGGGGTAAAATGTAATTTTGGAAAAGT
* *
51578178 TTTAGAGGTCAAAATGTAATTTT-CAGAAAGT
1 TTTAGGGGT-AAAATGTAATTTTGGA-AAAGT
* *
51578209 TTTAAGGTTAAAATGTAATTTTGGAAAAG-
1 TTTAGGGGTAAAATGTAATTTTGGAAAAGT
*
51578238 TTTAGGGGTTAAAATGTAATTTT-TAGAAAGT
1 TTTAGGGG-TAAAATGTAATTTTGGA-AAAGT
51578269 TTT-GGGGTCAAAATAG-AATTTT
1 TTTAGGGGT-AAAAT-GTAATTTT
51578291 TTGACAGTTT
Statistics
Matches: 163, Mismatches: 21, Indels: 32
0.75 0.10 0.15
Matches are distributed among these distances:
27 3 0.02
28 19 0.12
29 24 0.15
30 103 0.63
31 14 0.09
ACGTcount: A:0.37, C:0.03, G:0.22, T:0.37
Consensus pattern (30 bp):
TTTAGGGGTAAAATGTAATTTTGGAAAAGT
Found at i:51578152 original size:60 final size:60
Alignment explanation
Indices: 51578061--51578290 Score: 297
Period size: 60 Copynumber: 3.9 Consensus size: 60
51578051 TTTTTGAAGA
* *
51578061 TTTAGGGG-TAAAATGGTAATTTT-GAAAAGTTTTAGGGTCAAAATCTAATTTTGGAAAAG
1 TTTAGGGGTTAAAAT-GTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAG
* *
51578120 TATAGGGGTTAAAATGTAATTTTCAAAAAGTTTTGGGGTC--AATATAATTTTGGAAAAG
1 TTTAGGGGTTAAAATGTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAG
* * * * * *
51578178 TTTAGAGGTCAAAATGTAATTTTCAGAAAGTTTTAAGGTTAAAATGTAATTTTGGAAAAG
1 TTTAGGGGTTAAAATGTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAG
* * * *
51578238 TTTAGGGGTTAAAATGTAATTTTTAGAAAGTTTTGGGGTCAAAATAGAATTTT
1 TTTAGGGGTTAAAATGTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTT
51578291 TTGACAGTTT
Statistics
Matches: 147, Mismatches: 20, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
58 50 0.34
59 15 0.10
60 82 0.56
ACGTcount: A:0.37, C:0.03, G:0.22, T:0.37
Consensus pattern (60 bp):
TTTAGGGGTTAAAATGTAATTTTCAAAAAGTTTTAGGGTCAAAATATAATTTTGGAAAAG
Found at i:51578192 original size:118 final size:117
Alignment explanation
Indices: 51578061--51578279 Score: 341
Period size: 118 Copynumber: 1.9 Consensus size: 117
51578051 TTTTTGAAGA
* * *
51578061 TTTAGGGGTAAAATGGTAATTTTGA-AAAGTTTTAGGGTCAAAATCTAATTTTGGAAAAGTATAG
1 TTTAGAGGTAAAAT-GTAATTTTCAGAAAGTTTTAAGGTCAAAATCTAATTTTGGAAAAGTATAG
51578125 GGGTTAAAATGTAATTTTCAAAAAGTTTTGGGGTCAATATAATTTTGGAAAAG
65 GGGTTAAAATGTAATTTTCAAAAAGTTTTGGGGTCAATATAATTTTGGAAAAG
* * *
51578178 TTTAGAGGTCAAAATGTAATTTTCAGAAAGTTTTAAGGTTAAAATGTAATTTTGGAAAAGTTTAG
1 TTTAGAGGT-AAAATGTAATTTTCAGAAAGTTTTAAGGTCAAAATCTAATTTTGGAAAAGTATAG
* *
51578243 GGGTTAAAATGTAATTTTTAGAAAGTTTTGGGGTCAA
65 GGGTTAAAATGTAATTTTCAAAAAGTTTTGGGGTCAA
51578280 AATAGAATTT
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
117 17 0.18
118 75 0.82
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.37
Consensus pattern (117 bp):
TTTAGAGGTAAAATGTAATTTTCAGAAAGTTTTAAGGTCAAAATCTAATTTTGGAAAAGTATAGG
GGTTAAAATGTAATTTTCAAAAAGTTTTGGGGTCAATATAATTTTGGAAAAG
Found at i:51580174 original size:35 final size:33
Alignment explanation
Indices: 51580134--51580263 Score: 154
Period size: 35 Copynumber: 3.7 Consensus size: 33
51580124 TGGATATTTG
*
51580134 AATTTAAATTTATAATAATTTTAAATTTGAAAACA
1 AATTTAAATTTA-AATAAATTTAAATTT-AAAACA
* *
51580169 AATTTAAACTTAAATTAAATTTAAATTTAAAAATA
1 AATTTAAATTTAAA-TAAATTTAAATTT-AAAACA
51580204 AATTTAAATTTAAAATAAATTTAAACTTTAAAACA
1 AATTTAAATTT-AAATAAATTTAAA-TTTAAAACA
51580239 AATTT-AATCTTAAGATAAATTTAAA
1 AATTTAAAT-TTAA-ATAAATTTAAA
51580264 ATGGGTTTGG
Statistics
Matches: 84, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
34 7 0.08
35 71 0.85
36 6 0.07
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (33 bp):
AATTTAAATTTAAATAAATTTAAATTTAAAACA
Found at i:51580176 original size:18 final size:17
Alignment explanation
Indices: 51580134--51580263 Score: 154
Period size: 17 Copynumber: 7.5 Consensus size: 17
51580124 TGGATATTTG
*
51580134 AATTTAAATTTATAATA
1 AATTTAAATTTAAAATA
* *
51580151 ATTTTAAATTTGAAAACA
1 AATTTAAATTT-AAAATA
* *
51580169 AATTTAAACTTAAATTA
1 AATTTAAATTTAAAATA
51580186 AATTTAAATTTAAAAATA
1 AATTTAAATTT-AAAATA
51580204 AATTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
*
51580221 AATTTAAACTTTAAAACA
1 AATTTAAA-TTTAAAATA
*
51580239 AATTT-AATCTTAAGATA
1 AATTTAAAT-TTAAAATA
51580256 AATTTAAA
1 AATTTAAA
51580264 ATGGGTTTGG
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
16 1 0.01
17 51 0.53
18 44 0.46
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:51580233 original size:7 final size:6
Alignment explanation
Indices: 51580129--51580235 Score: 80
Period size: 6 Copynumber: 18.2 Consensus size: 6
51580119 TAATTTGGAT
* * **
51580129 ATTTGA ATTTAA ATTTATA A--TAA TTTTAA ATTTGAA A-ACAA ATTTAA
1 ATTTAA ATTTAA ATTTA-A ATTTAA ATTTAA ATTT-AA ATTTAA ATTTAA
* ** *
51580176 ACTTAA A-TTAA ATTTAA ATTTAA AAATAA ATTTAA ATTTAA A-ATAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
51580222 ATTTAA ACTTTAA A
1 ATTTAA A-TTTAA A
51580236 ACAAATTTAA
Statistics
Matches: 79, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
4 1 0.01
5 14 0.18
6 53 0.67
7 11 0.14
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (6 bp):
ATTTAA
Found at i:51590511 original size:9 final size:9
Alignment explanation
Indices: 51590497--51590585 Score: 51
Period size: 9 Copynumber: 9.8 Consensus size: 9
51590487 ATTATTCTAG
51590497 AAATTTTTA
1 AAATTTTTA
51590506 AAA-TTTTA
1 AAATTTTTA
*
51590514 AATTTTTTA
1 AAATTTTTA
*
51590523 TATATATTTTA
1 -AAAT-TTTTA
*
51590534 TAATTTTTA
1 AAATTTTTA
*
51590543 TAATTTTTTA
1 -AAATTTTTA
*
51590553 AAA--TAT-
1 AAATTTTTA
*
51590559 AAATTTTGA
1 AAATTTTTA
51590568 AAATTTTATA
1 AAATTTT-TA
51590578 AATATTTT
1 AA-ATTTT
51590586 GAATTTTTGG
Statistics
Matches: 59, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
6 3 0.05
7 2 0.03
8 8 0.14
9 22 0.37
10 14 0.24
11 10 0.17
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (9 bp):
AAATTTTTA
Found at i:51590533 original size:20 final size:18
Alignment explanation
Indices: 51590497--51590613 Score: 75
Period size: 20 Copynumber: 6.4 Consensus size: 18
51590487 ATTATTCTAG
51590497 AAATTTTTA-AA-ATTTT
1 AAATTTTTATAATATTTT
51590513 AAATTTTTTATATATATTTT
1 AAA-TTTTTATA-ATATTTT
*
51590533 ATAATTTTTATAATTTTTT
1 A-AATTTTTATAATATTTT
*
51590552 AAA---ATATAA-ATTTT
1 AAATTTTTATAATATTTT
*
51590566 GAAAATTTTATAAATATTTT
1 -AAATTTTTAT-AATATTTT
* *
51590586 GAATTTTTGGATATTATTTT
1 AAATTTTT--ATAATATTTT
*
51590606 GAATTTTT
1 AAATTTTT
51590614 TTGTGTAATT
Statistics
Matches: 81, Mismatches: 7, Indels: 22
0.74 0.06 0.20
Matches are distributed among these distances:
14 4 0.05
15 8 0.10
16 3 0.04
17 6 0.07
18 6 0.07
19 16 0.20
20 34 0.42
21 4 0.05
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (18 bp):
AAATTTTTATAATATTTT
Found at i:51599593 original size:31 final size:31
Alignment explanation
Indices: 51599534--51599665 Score: 115
Period size: 31 Copynumber: 4.1 Consensus size: 31
51599524 ACAAAAATTT
*
51599534 TAATAAA-AATA-TTACAAAAATTTAAATATAA
1 TAATAAATAATATTTA-AATAATTT-AATATAA
* *
51599565 TAATAAATAACATTTAAGTAATTTAATATAA
1 TAATAAATAATATTTAAATAATTTAATATAA
* *
51599596 TGATATTTGTAAATAATATATAAATAATTTAACATAA
1 T-A-A----TAAATAATATTTAAATAATTTAATATAA
* *
51599633 TAATATATGATATTTAAATAATTTAATATAA
1 TAATAAATAATATTTAAATAATTTAATATAA
51599664 TA
1 TA
51599666 CATTTATATA
Statistics
Matches: 82, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
31 41 0.50
32 10 0.12
33 4 0.05
35 1 0.01
36 1 0.01
37 25 0.30
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.39
Consensus pattern (31 bp):
TAATAAATAATATTTAAATAATTTAATATAA
Found at i:51599624 original size:37 final size:36
Alignment explanation
Indices: 51599537--51599665 Score: 100
Period size: 37 Copynumber: 3.8 Consensus size: 36
51599527 AAAATTTTAA
*
51599537 TAAA-AATATTACAAAAATTTAA-AT-ATAATA-A--
1 TAAATAATATTA-AATAATTTAATATAATAATATATG
* * * *
51599568 TAAATAACATTTAAGTAATTTAATATAATGATATTTG
1 TAAATAATA-TTAAATAATTTAATATAATAATATATG
*
51599605 TAAATAATATATAAATAATTTAACATAATAATATATG
1 TAAATAATAT-TAAATAATTTAATATAATAATATATG
51599642 ---AT-AT-TTAAATAATTTAATATAATA
1 TAAATAATATTAAATAATTTAATATAATA
51599666 CATTTATATA
Statistics
Matches: 79, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
31 22 0.28
32 12 0.15
33 7 0.09
34 7 0.09
36 1 0.01
37 30 0.38
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (36 bp):
TAAATAATATTAAATAATTTAATATAATAATATATG
Found at i:51599653 original size:21 final size:21
Alignment explanation
Indices: 51599561--51599654 Score: 66
Period size: 21 Copynumber: 4.2 Consensus size: 21
51599551 AAATTTAAAT
* *
51599561 ATAATAATAAATAACATTTAA
1 ATAATAATATATAATATTTAA
* *
51599582 GTAATTTAATATAATGATATTTGTAA
1 ATAA--TAATAT-ATAATA-TT-TAA
51599608 ATAAT-ATATA-AATAATTTAA
1 ATAATAATATATAAT-ATTTAA
*
51599628 CATAATAATATATGATATTTAA
1 -ATAATAATATATAATATTTAA
51599650 ATAAT
1 ATAAT
51599655 TTAATATAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 18
0.70 0.09 0.22
Matches are distributed among these distances:
20 3 0.05
21 17 0.30
22 13 0.23
23 11 0.19
24 5 0.09
25 2 0.04
26 6 0.11
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (21 bp):
ATAATAATATATAATATTTAA
Found at i:51605801 original size:23 final size:23
Alignment explanation
Indices: 51605771--51605826 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
51605761 TTTCAGCAGA
51605771 AAAGTGTGCAGATTTTCTGAACT
1 AAAGTGTGCAGATTTTCTGAACT
* * *
51605794 AAATTGTGCTGATTTTCTGCACT
1 AAAGTGTGCAGATTTTCTGAACT
51605817 AAAGTGTGCA
1 AAAGTGTGCA
51605827 AGAAAACATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (23 bp):
AAAGTGTGCAGATTTTCTGAACT
Found at i:51606845 original size:19 final size:19
Alignment explanation
Indices: 51606821--51606866 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
51606811 TAAATTTTAA
51606821 AATTTTT-ATAAATATTTTG
1 AATTTTTGAT-AATATTTTG
*
51606840 AATTTTTGGATATTATTTTG
1 AATTTTT-GATAATATTTTG
51606860 AATTTTT
1 AATTTTT
51606867 TGTTTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 7 0.29
20 15 0.62
21 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (19 bp):
AATTTTTGATAATATTTTG
Found at i:51606846 original size:20 final size:19
Alignment explanation
Indices: 51606809--51606867 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
51606799 TTTTTTAAAA
* *
51606809 TATAA-ATTTTAAAATTTT
1 TATAATATTTTGAATTTTT
51606827 TATAAATATTTTGAATTTTT
1 TAT-AATATTTTGAATTTTT
* *
51606847 GGATATTATTTTGAATTTTT
1 -TATAATATTTTGAATTTTT
51606867 T
1 T
51606868 GTTTAATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
18 3 0.09
19 2 0.06
20 26 0.79
21 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
TATAATATTTTGAATTTTT
Found at i:51607419 original size:23 final size:23
Alignment explanation
Indices: 51607393--51607436 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
51607383 AAATAAATAC
*
51607393 TCATA-TTTATATTATTAAAATTT
1 TCATATTTTATACTA-TAAAATTT
51607416 TCATATTTTATACTATAAAAT
1 TCATATTTTATACTATAAAAT
51607437 ATTTATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (23 bp):
TCATATTTTATACTATAAAATTT
Found at i:51616681 original size:40 final size:40
Alignment explanation
Indices: 51616584--51616672 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 40
51616574 AAAAAATCGA
* * *
51616584 TGATTCGACCCAATTTAAACGGATGGAATTCAATTAATTT
1 TGATTCGATCCAATTTGAACAGATGGAATTCAATTAATTT
* *
51616624 TGATTCGATCCAATTTGAACAGATGGAATTCGATTAGTTT
1 TGATTCGATCCAATTTGAACAGATGGAATTCAATTAATTT
51616664 TGATTCGAT
1 TGATTCGAT
51616673 TTTCTTTGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.37
Consensus pattern (40 bp):
TGATTCGATCCAATTTGAACAGATGGAATTCAATTAATTT
Found at i:51619745 original size:73 final size:72
Alignment explanation
Indices: 51619627--51619767 Score: 219
Period size: 73 Copynumber: 1.9 Consensus size: 72
51619617 AGGAAAAGTA
* *
51619627 CCATTTAATTGATTTTCTGAAACATCAAATAACTCCAAAGATGATAACTCTCCTATCGACAATGG
1 CCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACTCCCCTATCGACAATGG
51619692 AATTTGG
66 AATTTGG
* * **
51619699 CCATTTAATTGATTTTTTTGAAACATCAAACAACTTCAAAGATGATAACTCCCCTATCGATGATG
1 CCATTTAATTGA-TTTTCTGAAACATCAAACAACTCCAAAGATGATAACTCCCCTATCGACAATG
51619764 GAAT
65 GAAT
51619768 GGGACCAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 12 0.19
73 50 0.81
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (72 bp):
CCATTTAATTGATTTTCTGAAACATCAAACAACTCCAAAGATGATAACTCCCCTATCGACAATGG
AATTTGG
Found at i:51628693 original size:15 final size:15
Alignment explanation
Indices: 51628673--51628710 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
51628663 TTTTAAATTA
51628673 ATTTTAAAATAAAAT
1 ATTTTAAAATAAAAT
* *
51628688 ATTTTATATTAAAAT
1 ATTTTAAAATAAAAT
51628703 ATTTTAAA
1 ATTTTAAA
51628711 TATTTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTTAAAATAAAAT
Found at i:51630026 original size:29 final size:31
Alignment explanation
Indices: 51629978--51630058 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 31
51629968 GAATTGGATC
* **
51629978 AAATCAAATTTTCACGTATAAAATTACACA-
1 AAATCAAAGTTTCATATATAAAATTACACAT
* *
51630008 AAATCAAA-TTTCATATATACAATTGCACATT
1 AAATCAAAGTTTCATATATAAAATTACACA-T
*
51630039 AAACCAAAGTTT-ATATATAA
1 AAATCAAAGTTTCATATATAA
51630059 TTTTAAGATT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
29 17 0.40
30 8 0.19
31 14 0.33
32 3 0.07
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (31 bp):
AAATCAAAGTTTCATATATAAAATTACACAT
Found at i:51635635 original size:18 final size:18
Alignment explanation
Indices: 51635585--51635627 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
51635575 TGTCCCTTTC
*
51635585 TTTTTTATA-TTCAGTTTT
1 TTTTTTATATTTTA-TTTT
51635603 TTTTTTATATTTTATTTT
1 TTTTTTATATTTTATTTT
51635621 TTTTTTA
1 TTTTTTA
51635628 GTTTTTATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTTTATATTTTATTTT
Found at i:51636017 original size:20 final size:21
Alignment explanation
Indices: 51635980--51636021 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
51635970 CACTGACGTA
*
51635980 TCTTATGTTTTGTAATTTTTC
1 TCTTATGTTCTGTAATTTTTC
*
51636001 TCTT-TGTTCTGTTATTTTTC
1 TCTTATGTTCTGTAATTTTTC
51636021 T
1 T
51636022 GCTACATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.10, C:0.12, G:0.10, T:0.69
Consensus pattern (21 bp):
TCTTATGTTCTGTAATTTTTC
Found at i:51647581 original size:12 final size:12
Alignment explanation
Indices: 51647564--51647602 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
51647554 ACACGTGCCA
51647564 GGCACAATAAGG
1 GGCACAATAAGG
* *
51647576 GGCACAATGAGA
1 GGCACAATAAGG
51647588 GGCACAAATAAGG
1 GGCAC-AATAAGG
51647601 GG
1 GG
51647603 TAGAAGATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 15 0.68
13 7 0.32
ACGTcount: A:0.41, C:0.15, G:0.36, T:0.08
Consensus pattern (12 bp):
GGCACAATAAGG
Found at i:51647860 original size:12 final size:12
Alignment explanation
Indices: 51647843--51647867 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51647833 TTTAAAGTGA
51647843 TGAAAAAATTAT
1 TGAAAAAATTAT
51647855 TGAAAAAATTAT
1 TGAAAAAATTAT
51647867 T
1 T
51647868 AATTATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (12 bp):
TGAAAAAATTAT
Found at i:51650838 original size:30 final size:31
Alignment explanation
Indices: 51650798--51650869 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 31
51650788 GTTACATTTA
* *
51650798 ACAAAGCAGTCACTCAACTT-T-GAAAATGTG
1 ACAAAACAGTCACTAAACTTATCGAAAA-GTG
*
51650828 ACAAAACAGTCACTAAAGTTATCGAAAAGTG
1 ACAAAACAGTCACTAAACTTATCGAAAAGTG
51650859 ACAAAACAGTC
1 ACAAAACAGTC
51650870 CTATTGGCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 17 0.46
31 15 0.41
32 5 0.14
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.19
Consensus pattern (31 bp):
ACAAAACAGTCACTAAACTTATCGAAAAGTG
Found at i:51654292 original size:138 final size:138
Alignment explanation
Indices: 51654064--51654325 Score: 361
Period size: 138 Copynumber: 1.9 Consensus size: 138
51654054 ACCTGTTGCT
* * *
51654064 GGACATGAAGAGCCGTCAGAAATGCTAGATAAACGACCTCTCCTCCAAGGAGAAGAGCCACATGT
1 GGACATGAAGAGCCATCAGAAATGCTAGATAAACGACCTCTACTCCAAGCAGAAGAGCCACATGT
* * *
51654129 TCCTGGACATGAAGAACCGTTGGAAATGTTAGATAAACAACGTCGAA-TCCAAGAAAATGGACTC
66 TCATGGACATGAAGAACCGTCGGAAATGCTAGATAAACAACGTC-AACTCCAAGAAAATGGACTC
51654193 CATATAACC
130 CATATAACC
* * *
51654202 GGACATGAAGAGCCATCGGAAATGCTAGATAAGCGACGTCTACTCCAAGCA-AATGAGCTC-CAT
1 GGACATGAAGAGCCATCAGAAATGCTAGATAAACGACCTCTACTCCAAGCAGAA-GAGC-CACAT
* *
51654265 GTTGATGGACATGAAGAGCTC-TCGGAAATGCTAGATAAACAACGTCAACTCCAAGAAAATG
64 GTTCATGGACATGAAGAAC-CGTCGGAAATGCTAGATAAACAACGTCAACTCCAAGAAAATG
51654326 AGCTCCTTGT
Statistics
Matches: 109, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
137 4 0.04
138 103 0.94
139 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (138 bp):
GGACATGAAGAGCCATCAGAAATGCTAGATAAACGACCTCTACTCCAAGCAGAAGAGCCACATGT
TCATGGACATGAAGAACCGTCGGAAATGCTAGATAAACAACGTCAACTCCAAGAAAATGGACTCC
ATATAACC
Found at i:51654337 original size:69 final size:69
Alignment explanation
Indices: 51654040--51654347 Score: 313
Period size: 69 Copynumber: 4.5 Consensus size: 69
51654030 TCGTTTTCTT
* * * * *
51654040 CAAGAAAAAGAG-TCACCTGTTGCTGGACATGAAGAGCCGTCAGAAATGCTAGATAAACGACCTC
1 CAAGAAAATGAGCTC-CATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTC
**
51654104 TCCTC
65 AACTC
* * * * *
51654109 CAAGGAGAA-GAGC-CACATGTTCCTGGACATGAAGAACCGTTGGAAATGTTAGATAAACAACGT
1 CAA-GAAAATGAGCTC-CATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGT
51654172 CGAA-TC
64 C-AACTC
* ** * * * *
51654178 CAAGAAAATG-GACTCCATATAACCGGACATGAAGAGCCATCGGAAATGCTAGATAAGCGACGTC
1 CAAGAAAATGAG-CTCCATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTC
*
51654242 TACTC
65 AACTC
* *
51654247 CAAGCAAATGAGCTCCATGTTGATGGACATGAAGAGCTC-TCGGAAATGCTAGATAAACAACGTC
1 CAAGAAAATGAGCTCCATGTTGCTGGACATGAAGAGC-CGTCGGAAATGCTAGATAAACAACGTC
51654311 AACTC
65 AACTC
*
51654316 CAAGAAAATGAGCTCCTTGTTGCTGGACATGA
1 CAAGAAAATGAGCTCCATGTTGCTGGACATGA
51654348 GCTAGATAAA
Statistics
Matches: 195, Mismatches: 35, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
68 6 0.03
69 182 0.93
70 7 0.04
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (69 bp):
CAAGAAAATGAGCTCCATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTCA
ACTC
Found at i:51654344 original size:138 final size:138
Alignment explanation
Indices: 51654040--51654347 Score: 358
Period size: 138 Copynumber: 2.2 Consensus size: 138
51654030 TCGTTTTCTT
* * *
51654040 CAAGAAAAAGAG-TCACCTGTTGCTGGACATGAAGAGCCGTCAGAAATGCTAGATAAACGACCTC
1 CAAGAAAATGAGCTC-CATGTTGCTGGACATGAAGAGCCATCAGAAATGCTAGATAAACGACCTC
* * * * *
51654104 TCCTCCAAGGAGAAGAGCCACATGTTCCTGGACATGAAGAACCGTTGGAAATGTTAGATAAACAA
65 TACTCCAAGCAGAAGAGCCACATGTTCATGGACATGAAGAACCGTCGGAAATGCTAGATAAACAA
51654169 CGTCGAATC
130 CGTCGAATC
* ** * * * *
51654178 CAAGAAAATG-GACTCCATATAACCGGACATGAAGAGCCATCGGAAATGCTAGATAAGCGACGTC
1 CAAGAAAATGAG-CTCCATGTTGCTGGACATGAAGAGCCATCAGAAATGCTAGATAAACGACCTC
* *
51654242 TACTCCAAGCA-AATGAGCTC-CATGTTGATGGACATGAAGAGCTC-TCGGAAATGCTAGATAAA
65 TACTCCAAGCAGAA-GAGC-CACATGTTCATGGACATGAAGAAC-CGTCGGAAATGCTAGATAAA
51654304 CAACGTC-AACTC
127 CAACGTCGAA-TC
*
51654316 CAAGAAAATGAGCTCCTTGTTGCTGGACATGA
1 CAAGAAAATGAGCTCCATGTTGCTGGACATGA
51654348 GCTAGATAAA
Statistics
Matches: 141, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
137 5 0.04
138 131 0.93
139 5 0.04
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (138 bp):
CAAGAAAATGAGCTCCATGTTGCTGGACATGAAGAGCCATCAGAAATGCTAGATAAACGACCTCT
ACTCCAAGCAGAAGAGCCACATGTTCATGGACATGAAGAACCGTCGGAAATGCTAGATAAACAAC
GTCGAATC
Found at i:51654559 original size:120 final size:120
Alignment explanation
Indices: 51654422--51657123 Score: 3741
Period size: 120 Copynumber: 22.5 Consensus size: 120
51654412 AAAAAGCCAC
* * * * * * * *
51654422 ATAAAAGACATCAACTCCAAGAAGATGTTGATGGGCACGAAGAGCCTTCGAAAATTCTAGATAAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* * * * * *
51654487 AGACGTCGACTCCGAGAAGATGTTGATGGGCACGAAGAGCCCTCGAAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * * * *
51654542 ATGAAAGACATCGACTCCGAGAACATGTTGATGGCCACGAAGTGCCCTCAAAAATGCTAGATAAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* * * * * *
51654607 AGACGTCAACTTCGAGAAGATGTTGACGGCCAC-AATGAGCCCTCGGAAATGCTAT
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAA-GTGCCCTCGGAAATGCTAG
* * * * * *
51654662 ATGAAAGACATCAACTCCAAGAACATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* * * *
51654727 AGACATCAACTGCGAGAACATGTTGATGGCCACGAAGTTCCCTCTGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
*
51654782 ATAAAAGACGTCGACTCCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* * *
51654847 AGACACCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGAAAATGCTAA
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * *
51654902 ATAAAAGACGTCGACTTCGAGAACATATTGATGGCCATGAAGTGCCCTC-AGAAATGCTAGATGA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGA-AAATGCTAGATGA
* * * * *
51654966 AAGACGTCGACTTCGAGAAGATGTTGATGCCCATGAAGTGCCTTCGGAAATGCTAG
65 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* *
51655022 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCATCGGAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* *
51655087 AGACATCGACTTCGAGAACATATTGATGGCCACGAAGTACCCTCGGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * * *
51655142 ATAACAGACGTCGACTTCGAGAAGATATCGATGGGCACGAAGAGCCCT-TAGAAATGGTAGATGA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGA-AAATGCTAGATGA
* * *
51655206 AAGACATCGACTCCGAGAACATGTTGATGGCCATGAAGTGCCCTTGGAAATGCTAG
65 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * *
51655262 ATAGAAGACGTCAACTTCGAGAAGATGTTAATGGCCACAAAGAGCCCTCGAAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* * *
51655327 AGACATCGACTTCGAGAACATATTGATGGCCATGAAGTGCCCTCAGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * * *
51655382 ATAATAGACATCGACTTCAAGAAGATGTTGATGGGCACGAAGAGCCCTCAAAAATGGTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* *
51655447 AGACATCGACTCCGAGAACATGTTGATGGCCATGAAGTGCCCTCGGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * *
51655502 ATAAAAGACGTCGACTTCGAGAACATGTTGATGGCCATGAAGTGCCCTC-AGAAATGCTAGATGA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGA-AAATGCTAGATGA
* * *
51655566 AAGACGTCGACTTCGAGAACATGTTGATGGCCATGAAGTGCCTTCGGAAATGCTAG
65 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
*
51655622 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCATCGAAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
*
51655687 AGACATCGACTTCGAGAACATATTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * *
51655742 ATAATAGACGTCGACTTCGAGAAGATATTGATGGGCACGAAGAGCCCTC-AGAAATGGTAGATGA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGA-AAATGCTAGATGA
* * * *
51655806 AAGGCATCGACTCCGAGAACATGTTGATGGCCATGAAGTGCCCTCGGAAATCCTAG
65 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * * *
51655862 ATAGAAGACGTCGACTTCGGGAAGATGTTAATAGCCACAAAAAGCCCTCGAAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* *
51655927 AGACATCGACTTCGAGAACATATTGATGGCCACGAAGTGCCCTCAGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * * *
51655982 ATAATAGACGTCGACTTCAAGAAGATGTTGATGGGCACGAAGAGCGCTCAAAAATGGTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* * *
51656047 AGACATCGACTCCGAGAACATGTTGATGGCCATGAAGTGCCTTCGGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * *
51656102 ATAAAAGACGTCGACTTCGAGAACATGTTGATGGCCATGAAGTGCCCTC-AGAAATGCTAGATGA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGA-AAATGCTAGATGA
* * * *
51656166 AAGACGTCGACTTCGAGAACATGTTGATGGCCATGAAGTACCTTCGGAAATGCTAG
65 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * *
51656222 ATAAAAGACGGCGACTTCGAGAAGACGTTGATGGCCACGAAGAGCCATCGAAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
*
51656287 AGACATCGACTTCGAGAACATATTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * *
51656342 ATAATAGACGTCAACTTCGAGAAGATGTTGATGGGCACGAAGAGCCCTC-AGAAATGGTAGATGA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGA-AAATGCTAGATGA
* *
51656406 AAGACATCGA-TTCCGAGAACATGTTGATGGCCACGAAGTTCCCTCAGAAATGCTAG
65 AAGACATCGACTT-CGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * * *
51656462 ATAAAAGACATCGTCTCCAAGAAGATGTTGATGGCCACAAAGAGCCCTCGAAAATGCTAAATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* *
51656527 AGACATCGACTCCGAGAACATGTTGATGGCCACGAAGTGCCCTCAGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * *
51656582 ATAAAAGACGTCGACTCCAAGAAGATGTTGATGGGCACGAAGAGTCCTCGGAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
**
51656647 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTTAGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * *
51656702 ATAAAAGACGTCGACTCCAAGAAGATGTTGATGAG-CACGAAGAGCCCTCGGAAATGCTAGATGA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATG-GCCACGAAGAGCCCTCGAAAATGCTAGATGA
* *
51656766 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCAGCAATGCTAG
65 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * * *
51656822 ATAAAAGACGTCGTCTCCAAGAAGATGTTGATGGGCACGAAGAGCCCTTGGAAATGCTAGATGAA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
* *
51656887 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAATGCCCTCCGAAATGCTAG
66 AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * *
51656942 ATAAAAGACGCCGACTCCGAGAAGATGTTGATGGCCACGAAGAGCCCAT-GGAAATGCTAGATGA
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCC-TCGAAAATGCTAGATGA
51657006 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
65 AAGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
* * * * * * * *
51657062 ATAAAAGACGTCGACTCCAAGAAAATGTTGATGGACATGAGGAGCCCTGGGAAATGCTAGAT
1 ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGAT
51657124 AAACGACGTC
Statistics
Matches: 2321, Mismatches: 241, Indels: 40
0.89 0.09 0.02
Matches are distributed among these distances:
119 11 0.00
120 2300 0.99
121 10 0.00
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (120 bp):
ATAAAAGACGTCGACTTCGAGAAGATGTTGATGGCCACGAAGAGCCCTCGAAAATGCTAGATGAA
AGACATCGACTTCGAGAACATGTTGATGGCCACGAAGTGCCCTCGGAAATGCTAG
Found at i:51658988 original size:2 final size:2
Alignment explanation
Indices: 51658981--51659018 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
51658971 TTATATTTGA
51658981 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51659019 GTGGTTGGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51669855 original size:15 final size:15
Alignment explanation
Indices: 51669831--51669867 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
51669821 ACAAAGAGTT
51669831 TCATCATCATCGTAA
1 TCATCATCATCGTAA
* *
51669846 TCATCGTCATCGTCA
1 TCATCATCATCGTAA
51669861 TCATCAT
1 TCATCAT
51669868 AATTAGATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (15 bp):
TCATCATCATCGTAA
Done.