Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 171 of 182
Found at i:51671615 original size:32 final size:29
Alignment explanation
Indices: 51671579--51671644 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
51671569 AGATTATTTA
51671579 AAAATTTTGTAAAAATAAAAAATAAATATTAT
1 AAAATTTT-TAAAAAT-AAAAA-AAATATTAT
**
51671611 AAAATTTTTAAAAATTCAAAAAATATTAT
1 AAAATTTTTAAAAATAAAAAAAATATTAT
51671640 AAAAT
1 AAAAT
51671645 ATTAAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 14 0.44
30 3 0.09
31 7 0.22
32 8 0.25
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (29 bp):
AAAATTTTTAAAAATAAAAAAAATATTAT
Found at i:51671643 original size:10 final size:10
Alignment explanation
Indices: 51671602--51671648 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
51671592 AATAAAAAAT
51671602 AAATATTATA
1 AAATATTATA
*
51671612 AAAT-TTTTA
1 AAATATTATA
*
51671621 AAA-ATTCAAA
1 AAATATT-ATA
51671631 AAATATTATA
1 AAATATTATA
51671641 AAATATTA
1 AAATATTA
51671649 AAATTTTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
9 9 0.30
10 18 0.60
11 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATATTATA
Found at i:51676425 original size:12 final size:12
Alignment explanation
Indices: 51676411--51676543 Score: 101
Period size: 12 Copynumber: 11.2 Consensus size: 12
51676401 AAGACAGCAG
*
51676411 CAAAAATAACAG
1 CAAAAATAACAA
* *
51676423 C-AAAACAATAA
1 CAAAAATAACAA
* *
51676434 GAAAAATAGCAA
1 CAAAAATAACAA
*
51676446 CAAAAACAACAA
1 CAAAAATAACAA
51676458 CAAAAATAACAA
1 CAAAAATAACAA
*
51676470 CAAAAATAGCAA
1 CAAAAATAACAA
* *
51676482 TAAAAA-ACAGAAA
1 CAAAAATA-A-CAA
* *
51676495 CAAAAATAATAG
1 CAAAAATAACAA
*
51676507 CAAAAATAGCAA
1 CAAAAATAACAA
*
51676519 -AAAAACAACAA
1 CAAAAATAACAA
*
51676530 CAAAAATGACAA
1 CAAAAATAACAA
51676542 CA
1 CA
51676544 TCAAAGCAGT
Statistics
Matches: 91, Mismatches: 25, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
11 17 0.19
12 65 0.71
13 8 0.09
14 1 0.01
ACGTcount: A:0.71, C:0.16, G:0.06, T:0.08
Consensus pattern (12 bp):
CAAAAATAACAA
Found at i:51676475 original size:24 final size:24
Alignment explanation
Indices: 51676382--51676543 Score: 114
Period size: 24 Copynumber: 6.8 Consensus size: 24
51676372 ATAACATCCA
* * * *
51676382 AACAACCAAAATAATAACTAAGAC
1 AACAACAAAAATAACAACAAAAAC
* * *
51676406 AGCAGCAAAAATAACAGC-AAAAC
1 AACAACAAAAATAACAACAAAAAC
* * *
51676429 AATAAGAAAAATAGCAACAAAAAC
1 AACAACAAAAATAACAACAAAAAC
*
51676453 AACAACAAAAATAACAACAAAAAT
1 AACAACAAAAATAACAACAAAAAC
* * * *
51676477 AGCAATAAAAA-ACAGAAACAAAAAT
1 AACAACAAAAATA-A-CAACAAAAAC
* * *
51676502 AATAGCAAAAATAGCAA-AAAAAC
1 AACAACAAAAATAACAACAAAAAC
*
51676525 AACAACAAAAATGACAACA
1 AACAACAAAAATAACAACA
51676544 TCAAAGCAGT
Statistics
Matches: 103, Mismatches: 30, Indels: 10
0.72 0.21 0.07
Matches are distributed among these distances:
23 35 0.34
24 51 0.50
25 16 0.16
26 1 0.01
ACGTcount: A:0.69, C:0.17, G:0.07, T:0.08
Consensus pattern (24 bp):
AACAACAAAAATAACAACAAAAAC
Found at i:51676497 original size:37 final size:36
Alignment explanation
Indices: 51676435--51676543 Score: 150
Period size: 37 Copynumber: 3.0 Consensus size: 36
51676425 AAACAATAAG
*
51676435 AAAAATAGCAACAAAAACAACAACAAAAATAACAAC
1 AAAAATAGCAAAAAAAACAACAACAAAAATAACAAC
* *
51676471 AAAAATAGCAATAAAAAACAGA-AACAAAAATAATAGC
1 AAAAATAGCAA-AAAAAACA-ACAACAAAAATAACAAC
*
51676508 AAAAATAGC-AAAAAAACAACAACAAAAATGACAAC
1 AAAAATAGCAAAAAAAACAACAACAAAAATAACAAC
51676543 A
1 A
51676544 TCAAAGCAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
34 1 0.02
35 21 0.33
36 12 0.19
37 29 0.45
38 1 0.02
ACGTcount: A:0.72, C:0.16, G:0.06, T:0.07
Consensus pattern (36 bp):
AAAAATAGCAAAAAAAACAACAACAAAAATAACAAC
Found at i:51676618 original size:17 final size:20
Alignment explanation
Indices: 51676576--51676627 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 20
51676566 AACAGTAACT
51676576 AAAACAGTAAAAAACAACATC
1 AAAACAGTAAAAAACAACA-C
51676597 AAAACAG-AAAAAA-AAC-C
1 AAAACAGTAAAAAACAACAC
51676614 AAAACAGTAAAAAA
1 AAAACAGTAAAAAA
51676628 TAGTACCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.27
18 6 0.20
19 3 0.10
20 6 0.20
21 7 0.23
ACGTcount: A:0.73, C:0.15, G:0.06, T:0.06
Consensus pattern (20 bp):
AAAACAGTAAAAAACAACAC
Found at i:51682077 original size:22 final size:21
Alignment explanation
Indices: 51682052--51682095 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
51682042 ACCTTTGAGA
*
51682052 TTTAATCCTTTTATTTTCAATT
1 TTTAATCCCTTTATTTT-AATT
51682074 TTTAATCCCTTTATTTTAATT
1 TTTAATCCCTTTATTTTAATT
51682095 T
1 T
51682096 GGCAGTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.23, C:0.14, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTAATCCCTTTATTTTAATT
Found at i:51685747 original size:24 final size:24
Alignment explanation
Indices: 51685719--51685779 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
51685709 AATAATCTTC
*
51685719 CAATTAAATTCTTTTTATTTGTTT
1 CAATTAAACTCTTTTTATTTGTTT
* *
51685743 CAATTAAACTATATTTATTTGTTT
1 CAATTAAACTCTTTTTATTTGTTT
51685767 CAATTAAACTCTT
1 CAATTAAACTCTT
51685780 ATCAGTCTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.54
Consensus pattern (24 bp):
CAATTAAACTCTTTTTATTTGTTT
Found at i:51688997 original size:26 final size:26
Alignment explanation
Indices: 51688968--51689034 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
51688958 TATCAAGGCA
51688968 ACATAGCTTTTAAGTTTTTTTTTCCT
1 ACATAGCTTTTAAGTTTTTTTTTCCT
*
51688994 ACATTCAGTCTTTT---TTTTTTTTTGCT
1 ACA-T-AG-CTTTTAAGTTTTTTTTTCCT
51689020 ACATAGCTTTTAAGT
1 ACATAGCTTTTAAGT
51689035 ATTAATGCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
23 5 0.15
24 2 0.06
25 1 0.03
26 18 0.53
27 1 0.03
28 2 0.06
29 5 0.15
ACGTcount: A:0.19, C:0.15, G:0.09, T:0.57
Consensus pattern (26 bp):
ACATAGCTTTTAAGTTTTTTTTTCCT
Found at i:51692085 original size:138 final size:139
Alignment explanation
Indices: 51691884--51692151 Score: 398
Period size: 138 Copynumber: 1.9 Consensus size: 139
51691874 TATTTAGAGA
* *
51691884 TTTATTCTCGCTGTTCAACAGATTTGATTTGATTTTGATTTTGTTTCCAAACAAGAATTAAGTGA
1 TTTACTCTCGCTGTTCAACAGATTTGATTTGATTTTGATTTTGTTTCCAAACAAGAACTAAGTGA
* * *
51691949 ATGATTCTATTTCGGGATTTATTCCCAACGTTCAACA-ATTTTATTCTATATTTGATTTTGTTGA
66 ATAATTCTATTTCGAGATTTATTCCCAACGTTCAACAGATTTTATTATATATTTGATTTTGTTGA
51692013 AAAATTTTG
131 AAAATTTTG
* *
51692022 TTTACTCTCGCTGTTCAACAGATTTTATTCT-A-TTTGATTTTTGTTTCCAAACATGAACTAAGT
1 TTTACTCTCGCTGTTCAACAGATTTGATT-TGATTTTGA-TTTTGTTTCCAAACAAGAACTAAGT
* * * *
51692085 GAATAATTTTGTTTCGAGATTTATTCCCAATGTTTAACAGATTTTATTATATATTTGATTTTGTT
64 GAATAATTCTATTTCGAGATTTATTCCCAACGTTCAACAGATTTTATTATATATTTGATTTTGTT
51692150 GA
129 GA
51692152 TTAATTTTCT
Statistics
Matches: 116, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
137 5 0.04
138 84 0.72
139 27 0.23
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.47
Consensus pattern (139 bp):
TTTACTCTCGCTGTTCAACAGATTTGATTTGATTTTGATTTTGTTTCCAAACAAGAACTAAGTGA
ATAATTCTATTTCGAGATTTATTCCCAACGTTCAACAGATTTTATTATATATTTGATTTTGTTGA
AAAATTTTG
Found at i:51694233 original size:27 final size:28
Alignment explanation
Indices: 51694189--51694242 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
51694179 AAACTGTTTA
*
51694189 TCTCCTCTCTTTTTTAGTTTTCTTTTTG
1 TCTCCTCTCTTTTTTAGTCTTCTTTTTG
*
51694217 TCTCTTCT-TTTTTTAGTCTTCTTTTT
1 TCTCCTCTCTTTTTTAGTCTTCTTTTT
51694243 CTTTTAACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.04, C:0.20, G:0.06, T:0.70
Consensus pattern (28 bp):
TCTCCTCTCTTTTTTAGTCTTCTTTTTG
Found at i:51694247 original size:17 final size:16
Alignment explanation
Indices: 51694206--51694248 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
51694196 TCTTTTTTAG
*
51694206 TTTTCTTTTTGTCTCT
1 TTTTCTTTTAGTCTCT
51694222 TCTTT-TTTTAGTCTTCT
1 T-TTTCTTTTAGTC-TCT
51694239 TTTTCTTTTA
1 TTTTCTTTTA
51694249 ACTATGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.74
Consensus pattern (16 bp):
TTTTCTTTTAGTCTCT
Found at i:51697055 original size:153 final size:153
Alignment explanation
Indices: 51696756--51697056 Score: 338
Period size: 153 Copynumber: 2.0 Consensus size: 153
51696746 TCTAAGGAAC
* * * *
51696756 TGCAATCATGGTGAAGGAGATATTCCTAGTGCTTTTTCTCGTCTATCCTCTTTGATATGTCTTGA
1 TGCAATCATGGTGAAGGAGATATTCCTAGTGATATTTCTCGTCTATCCTCATTGAGATGTCTTGA
* * * * *
51696821 TCTTAGGGGAAACAACTTCAACAGCATACCGGCGTCTCTTATTTGACTCTCCAAGCTTGAATATC
66 TCTTAGGGGAAACAACTTCAACAGCATACCGGCGTCTCTTATCTCACTCTCCAAGCTTCAAAAGC
* *
51696886 TTATATTATCAAATTGCAGCCTG
131 TTAGAGTATCAAATTGCAGCCTG
*
51696909 TGCAAT-ATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGTCTATCCTCATTGAGA-GTTCTT
1 TGCAATCA-TGGTGAAGGAGATATTCCTAGTGATATTTCTCGTCTATCCTCATTGAGATG-TCTT
* * * * * * * * *
51696972 GATCTTAGTGGTAACAATTTCACCAGCGTAGCTGCGTCTCTTA-CTCATCTTTCCAATCTTCAAA
64 GATCTTAGGGGAAACAACTTCAACAGCATACCGGCGTCTCTTATCTCA-CTCTCCAAGCTTCAAA
* * *
51697036 AGCTTGGAGTGTCAGATTGCA
128 AGCTTAGAGTATCAAATTGCA
51697057 ATGAGCTTGA
Statistics
Matches: 121, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
152 4 0.03
153 117 0.97
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (153 bp):
TGCAATCATGGTGAAGGAGATATTCCTAGTGATATTTCTCGTCTATCCTCATTGAGATGTCTTGA
TCTTAGGGGAAACAACTTCAACAGCATACCGGCGTCTCTTATCTCACTCTCCAAGCTTCAAAAGC
TTAGAGTATCAAATTGCAGCCTG
Found at i:51697154 original size:42 final size:42
Alignment explanation
Indices: 51697095--51697180 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
51697085 AGCAAGAATG
51697095 ACAAGTGAGTGGTGGATAAGTTATGGTTCTCTGATTAAAGCC
1 ACAAGTGAGTGGTGGATAAGTTATGGTTCTCTGATTAAAGCC
*
51697137 ACAAGTGAGTGGTGGATAAGTTATGGTTCTCTGATTAAGGCC
1 ACAAGTGAGTGGTGGATAAGTTATGGTTCTCTGATTAAAGCC
51697179 AC
1 AC
51697181 TAACTACTAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (42 bp):
ACAAGTGAGTGGTGGATAAGTTATGGTTCTCTGATTAAAGCC
Found at i:51699370 original size:16 final size:17
Alignment explanation
Indices: 51699338--51699371 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
51699328 ATTTAGTATC
51699338 TAAAATAATTCTTATTA
1 TAAAATAATTCTTATTA
51699355 TAAAATAATT-TTATTA
1 TAAAATAATTCTTATTA
51699371 T
1 T
51699372 GAATAAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAAATAATTCTTATTA
Found at i:51702796 original size:153 final size:153
Alignment explanation
Indices: 51702504--51702805 Score: 351
Period size: 153 Copynumber: 2.0 Consensus size: 153
51702494 TCTAAGCGAC
* * * **
51702504 TGCAATCTTGGTGAAGAAGATATTCCTAGTGCTATTTCTCGTCTATCCTCTTTGCGATGTCTTTT
1 TGCAATATTGGTGAAGAAGATATTCCTAGTGATATTTCTCGTCTATCCTCATTGCGATGTCTTGA
* ***
51702569 TCTTAGGGGAAACAATTTCAACAGCATACCGGCGTCTCTTACTCGACTCTCCAGGCTTCACTTTC
66 TCTTAGGGGAAACAATTTCAACAGCATACCGGCGTCTCTTACTCGACTCTCCAAGCTTCAAAATC
51702634 TTGATTTGTCAAATTGCAGCTTG
131 TTGATTTGTCAAATTGCAGCTTG
* * * * *
51702657 TGCAATATTGGTGAAGGAGATATTCCTGGTGATATTTCTGGTCTATCTTCATTG-GATATTCTTG
1 TGCAATATTGGTGAAGAAGATATTCCTAGTGATATTTCTCGTCTATCCTCATTGCGAT-GTCTTG
* * * * * * *
51702721 ATCTTA-GTGATAACAATTTCACCAGCGTAGCTGCGTTTCTTACTC-ATCTTTCCAAGCTTCAAA
65 ATCTTAGGGGA-AACAATTTCAACAGCATACCGGCGTCTCTTACTCGA-CTCTCCAAGCTTCAAA
51702784 ATCTTAGA-TTGTCAAATTGCAG
128 ATCTT-GATTTGTCAAATTGCAG
51702806 TGAGCTTGAA
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
152 7 0.06
153 115 0.93
154 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (153 bp):
TGCAATATTGGTGAAGAAGATATTCCTAGTGATATTTCTCGTCTATCCTCATTGCGATGTCTTGA
TCTTAGGGGAAACAATTTCAACAGCATACCGGCGTCTCTTACTCGACTCTCCAAGCTTCAAAATC
TTGATTTGTCAAATTGCAGCTTG
Found at i:51707717 original size:22 final size:23
Alignment explanation
Indices: 51707692--51707739 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
51707682 TTTACATTAC
* *
51707692 ATAAAATAAT-ATTTATTTTTAA
1 ATAAAATAATCATATATCTTTAA
51707714 AT-AAATAATCATATATCTTTAA
1 ATAAAATAATCATATATCTTTAA
51707736 ATAA
1 ATAA
51707740 TAATTAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 7 0.32
22 14 0.64
23 1 0.05
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAAAATAATCATATATCTTTAA
Found at i:51707719 original size:21 final size:22
Alignment explanation
Indices: 51707695--51707743 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
51707685 ACATTACATA
* *
51707695 AAATAAT-ATTTATTTTTAAAT
1 AAATAATCATATATCTTTAAAT
51707716 AAATAATCATATATCTTTAAAT
1 AAATAATCATATATCTTTAAAT
51707738 -AATAAT
1 AAATAAT
51707744 TAAATAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATAATCATATATCTTTAAAT
Found at i:51712519 original size:153 final size:153
Alignment explanation
Indices: 51712226--51712527 Score: 342
Period size: 153 Copynumber: 2.0 Consensus size: 153
51712216 TCTAAGGGAC
* * * * *
51712226 TGCAATCTTGGTGAAGGAGATATTCCTAGCGCTATTTCTTGTCTATCATCTTTGAAACATCTTGA
1 TGCAATATGGGTGAAGGAGATATTCCTAGCGATATTTCTGGTCTATCATCATTGAAACATCTTGA
* * *
51712291 TCTTAAGGGTAACAATTTCAACAGCATACCGACATCTCTTACTCGACTCTCCAAGCTTGAATATC
66 TCTTAAGGGAAACAAATTCAACAGCATACCGACATCTCTTACTCGACTCTCCAAGCTTCAATATC
*
51712356 TTACATTGTCAAATTGCAGCCTG
131 TTACAGTGTCAAATTGCAGCCTG
* * * **
51712379 TGCAATATGGGTGAAGGAGATATTCCTAGTGATATTTCTGGTCTATCCTCATTGAGATTTCTT-A
1 TGCAATATGGGTGAAGGAGATATTCCTAGCGATATTTCTGGTCTATCATCATTGAAACATCTTGA
* * * * * *
51712443 GTCTT-AGTGGAAACAAATTCACCAGCATAGCTG-CGTCTCTTACTCGTCTTTCCAATCTTCAA-
66 -TCTTAAG-GGAAACAAATTCAACAGCATA-CCGACATCTCTTACTCGACTCTCCAAGCTTCAAT
**
51712505 AGTCTTGGAGTGTCAAATTGCAG
128 A-TCTTACAGTGTCAAATTGCAG
51712528 TGAGCTTGAA
Statistics
Matches: 123, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
152 4 0.03
153 117 0.95
154 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (153 bp):
TGCAATATGGGTGAAGGAGATATTCCTAGCGATATTTCTGGTCTATCATCATTGAAACATCTTGA
TCTTAAGGGAAACAAATTCAACAGCATACCGACATCTCTTACTCGACTCTCCAAGCTTCAATATC
TTACAGTGTCAAATTGCAGCCTG
Found at i:51718642 original size:17 final size:17
Alignment explanation
Indices: 51718611--51718653 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
51718601 GGAAAAAATA
*
51718611 GTTACAAGAATATGAAAG
1 GTTA-AAGAAGATGAAAG
51718629 GTTAAAGAAGATGAAAG
1 GTTAAAGAAGATGAAAG
*
51718646 ATTAAAGA
1 GTTAAAGA
51718654 TTAAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.53, C:0.02, G:0.23, T:0.21
Consensus pattern (17 bp):
GTTAAAGAAGATGAAAG
Found at i:51722239 original size:30 final size:30
Alignment explanation
Indices: 51722169--51722320 Score: 191
Period size: 30 Copynumber: 5.0 Consensus size: 30
51722159 TGATAAATGA
* *
51722169 TGAAAAAGTTCT-GAGGTCAAAATGTATTTT
1 TGAAAAAGTTTTAG-GGTCAAAATGTAATTT
* *
51722199 TTAGAAAAGTTTTAGGGTCAAAATGTAATTG
1 TGA-AAAAGTTTTAGGGTCAAAATGTAATTT
*
51722230 TGAAAAAGTTTTGGGGTCAAAATGTAATTT
1 TGAAAAAGTTTTAGGGTCAAAATGTAATTT
*
51722260 TCG-GAAAGTTTTAGGGTCAAAATGTAATTT
1 T-GAAAAAGTTTTAGGGTCAAAATGTAATTT
* *
51722290 TGGAAAAGTTTTGGGGTCAAAATGTAATTT
1 TGAAAAAGTTTTAGGGTCAAAATGTAATTT
51722320 T
1 T
51722321 TGAATTGTTT
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
29 1 0.01
30 80 0.75
31 25 0.23
32 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.37
Consensus pattern (30 bp):
TGAAAAAGTTTTAGGGTCAAAATGTAATTT
Found at i:51722285 original size:60 final size:60
Alignment explanation
Indices: 51722169--51722320 Score: 232
Period size: 60 Copynumber: 2.5 Consensus size: 60
51722159 TGATAAATGA
* * *
51722169 TGAAAAAGTTCTGAGGTCAAAATGTATTTTTTAGAAAAGTTTTAGGGTCAAAATGTAATTG
1 TGAAAAAGTTTTGGGGTCAAAATGTA-ATTTTAGAAAAGTTTTAGGGTCAAAATGTAATTG
* * *
51722230 TGAAAAAGTTTTGGGGTCAAAATGTAATTTTCGGAAAGTTTTAGGGTCAAAATGTAATTT
1 TGAAAAAGTTTTGGGGTCAAAATGTAATTTTAGAAAAGTTTTAGGGTCAAAATGTAATTG
*
51722290 TGGAAAAGTTTTGGGGTCAAAATGTAATTTT
1 TGAAAAAGTTTTGGGGTCAAAATGTAATTTT
51722321 TGAATTGTTT
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
60 60 0.71
61 24 0.29
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.37
Consensus pattern (60 bp):
TGAAAAAGTTTTGGGGTCAAAATGTAATTTTAGAAAAGTTTTAGGGTCAAAATGTAATTG
Found at i:51724001 original size:12 final size:14
Alignment explanation
Indices: 51723973--51724032 Score: 83
Period size: 14 Copynumber: 4.5 Consensus size: 14
51723963 TTGGGCCTAT
51723973 TTGGGCCATTGTAA
1 TTGGGCCATTGTAA
51723987 TTGGGCC-TT-TAA
1 TTGGGCCATTGTAA
51723999 TTGGGCC-TT-TAA
1 TTGGGCCATTGTAA
51724011 TTTGGGCCATTGTAA
1 -TTGGGCCATTGTAA
51724026 TTGGGCC
1 TTGGGCC
51724033 CTGGACTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
12 15 0.35
13 9 0.21
14 16 0.37
15 3 0.07
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (14 bp):
TTGGGCCATTGTAA
Found at i:51724100 original size:17 final size:17
Alignment explanation
Indices: 51724078--51724110 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
51724068 TCCAAATTTA
51724078 ACAAATTTAAATTTAAC
1 ACAAATTTAAATTTAAC
51724095 ACAAATTTAAATTTAA
1 ACAAATTTAAATTTAA
51724111 AAATTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
ACAAATTTAAATTTAAC
Found at i:51724141 original size:18 final size:18
Alignment explanation
Indices: 51724120--51724165 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
51724110 AAAATTGATT
51724120 TAAATTTAAATTT-TAAGA
1 TAAATTTAAATTTGTAA-A
*
51724138 TAAATTCAAATTTGTAAA
1 TAAATTTAAATTTGTAAA
*
51724156 TGAATTTAAA
1 TAAATTTAAA
51724166 ATTAATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (18 bp):
TAAATTTAAATTTGTAAA
Found at i:51724148 original size:24 final size:24
Alignment explanation
Indices: 51724096--51724150 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
51724086 AAATTTAACA
**
51724096 CAAATTTAAATTTAAAAATTGATT
1 CAAATTTAAATTTAAAAATAAATT
* * *
51724120 TAAATTTAAATTTTAAGATAAATT
1 CAAATTTAAATTTAAAAATAAATT
51724144 CAAATTT
1 CAAATTT
51724151 GTAAATGAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
CAAATTTAAATTTAAAAATAAATT
Found at i:51724163 original size:42 final size:41
Alignment explanation
Indices: 51724080--51724175 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 41
51724070 CAAATTTAAC
*
51724080 AAATTTAAATTTAACACAAATTTAAATTTAAAAATTGATTT
1 AAATTTAAATTTAACACAAATTCAAATTTAAAAATTGATTT
* * **
51724121 AAATTTAAATTTTAAGATAAATTCAAATTTGTAAA-TGAATTT
1 AAATTTAAA-TTTAACACAAATTCAAATTTAAAAATTG-ATTT
*
51724163 AAAATT-AATTTAA
1 AAATTTAAATTTAA
51724176 ACCAAATATA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
40 5 0.11
41 13 0.28
42 29 0.62
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (41 bp):
AAATTTAAATTTAACACAAATTCAAATTTAAAAATTGATTT
Found at i:51724851 original size:76 final size:76
Alignment explanation
Indices: 51724701--51724843 Score: 223
Period size: 76 Copynumber: 1.9 Consensus size: 76
51724691 CTTTATCCTA
* **
51724701 CTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCCGCTTTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAAATAAAGACTTAATATCCAACTTTACTTCAATTTCAAGAGGATAGG
51724766 AAACGATCTTG
66 AAACGATCTTG
* * * *
51724777 CTCTTACTTCAATTTCAGAAATAACGGCTTGATATCCAACTTTACTTCATTTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAAATAAAGACTTAATATCCAACTTTACTTCAATTTCAAGAGGATAGG
51724842 AA
66 AA
51724844 TTGATCTTAG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 60 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.34
Consensus pattern (76 bp):
CTCTTACTTCAATTTCAGAAATAAAGACTTAATATCCAACTTTACTTCAATTTCAAGAGGATAGG
AAACGATCTTG
Found at i:51724991 original size:159 final size:161
Alignment explanation
Indices: 51724688--51724997 Score: 378
Period size: 159 Copynumber: 1.9 Consensus size: 161
51724678 CGTTGAGTTG
* * * *
51724688 GTGCTTTATCCTACTCTTACTTCAATTTCAGAGATAAAGACTTAATATCCCGCTTTACTTCAATT
1 GTGCTTCATCCTACTCTTACTTCAATTTCAGAGACAAAGACTTAATATCCCACTCTACTTCAATT
* *
51724753 TCAAGAGGATAGGAAACGATCTTGCTCTTACTTCAATTTCAGAAATAACGGCTTGATATCCAACT
66 TCAAGAGGATA-G-AACGA--TTGCTCTTACTTCAATTTCAGAAATAACAGATTGATATCCAACT
* *
51724818 TTACTTCATTTTCAAGAGGATAGGAATTGATCTTA
127 CTACTTCAATTTCAAGAGGATAGGAATTGATCTTA
* ** **
51724853 GTGCTTCATCTTACTCTTACTTCAATTTCAGATAGACAAAGGTTTGTTAT-CCACTCTACTTCAA
1 GTGCTTCATCCTACTCTTACTTCAATTTCAG--AGACAAAGACTTAATATCCCACTCTACTTCAA
* *
51724917 TTTCAAGAGGAT-G-ACG-TTGCTCTTACTTCAATTTCAGAGATAA-AGATGTGTTATCCAACTC
64 TTTCAAGAGGATAGAACGATTGCTCTTACTTCAATTTCAGAAATAACAGAT-TGATATCCAACTC
*
51724978 TACTTCAATTTCAAGCGGAT
128 TACTTCAATTTCAAGAGGAT
51724998 GATGTCGCTC
Statistics
Matches: 126, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
158 2 0.02
159 55 0.44
162 3 0.02
164 1 0.01
165 29 0.23
166 24 0.19
167 12 0.10
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (161 bp):
GTGCTTCATCCTACTCTTACTTCAATTTCAGAGACAAAGACTTAATATCCCACTCTACTTCAATT
TCAAGAGGATAGAACGATTGCTCTTACTTCAATTTCAGAAATAACAGATTGATATCCAACTCTAC
TTCAATTTCAAGAGGATAGGAATTGATCTTA
Found at i:51724992 original size:69 final size:68
Alignment explanation
Indices: 51724866--51725141 Score: 390
Period size: 69 Copynumber: 4.0 Consensus size: 68
51724856 CTTCATCTTA
* * *
51724866 CTCTTACTTCAATTTCAGATAGACAAAGGTTTGTTATCCACTCTACTTCAATTTCAAGAGGATGA
1 CTCTTACTTCAATTTCAG--AGATAAAGATGTGTTATCCACTCTACTTCAATTTCAAGAGGATGA
51724931 CGTTG
64 CGTTG
* *
51724936 CTCTTACTTCAATTTCAGAGATAAAGATGTGTTATCCAACTCTACTTCAATTTCAAGCGGATGAT
1 CTCTTACTTCAATTTCAGAGATAAAGATGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGAC
*
51725001 GTCG
65 GTTG
* *
51725005 CTCTTACTTCAATTTCGGAGATAAAGATGTGTTATCCAACTCTACTTCAATTTCAAGGGGATGAC
1 CTCTTACTTCAATTTCAGAGATAAAGATGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGAC
*
51725070 ATTG
65 GTTG
* * * * *
51725074 CTCTTACTTCAATTTCAGAGATGAAGACGTATTATTCACTCTACTTTAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATAAAGATGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
51725139 TTG
66 TTG
51725142 GGACCTGCAG
Statistics
Matches: 186, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
68 44 0.24
69 124 0.67
70 18 0.10
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (68 bp):
CTCTTACTTCAATTTCAGAGATAAAGATGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
TTG
Found at i:51747603 original size:30 final size:30
Alignment explanation
Indices: 51747533--51747654 Score: 163
Period size: 30 Copynumber: 4.0 Consensus size: 30
51747523 TGATAAATGA
* *
51747533 TGAAAAAGTTCTGGGGTCAAAATGTATTTT
1 TGAAAAAGTTTTGGGGTCAAAATGTAATTT
* ** *
51747563 TTAGAAAAGTTTTAAGGTCAAAATGTAATTG
1 TGA-AAAAGTTTTGGGGTCAAAATGTAATTT
*
51747594 TGAAAAAGTTTTGTGGTCAAAATGTAATTT
1 TGAAAAAGTTTTGGGGTCAAAATGTAATTT
*
51747624 TGGAAAAGTTTTGGGGTCAAAATGTAATTT
1 TGAAAAAGTTTTGGGGTCAAAATGTAATTT
51747654 T
1 T
51747655 TGAATTGTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
30 55 0.70
31 24 0.30
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (30 bp):
TGAAAAAGTTTTGGGGTCAAAATGTAATTT
Found at i:51748705 original size:32 final size:32
Alignment explanation
Indices: 51748657--51748719 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
51748647 TCTTCTTTTT
*
51748657 TTTATTATTACAAAAAA-ATTTCATTATTAATA
1 TTTATTATTACAAAAAATATTT-ATTAATAATA
**
51748689 TTTATTATTATTAAAAATATTTATTAATAAT
1 TTTATTATTACAAAAAATATTTATTAATAAT
51748720 GTTATTCCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (32 bp):
TTTATTATTACAAAAAATATTTATTAATAATA
Found at i:51749334 original size:12 final size:14
Alignment explanation
Indices: 51749306--51749365 Score: 83
Period size: 14 Copynumber: 4.5 Consensus size: 14
51749296 TTGGGCCTAT
51749306 TTGGGCCATTGTAA
1 TTGGGCCATTGTAA
51749320 TTGGGCC-TT-TAA
1 TTGGGCCATTGTAA
51749332 TTGGGCC-TT-TAA
1 TTGGGCCATTGTAA
51749344 TTTGGGCCATTGTAA
1 -TTGGGCCATTGTAA
51749359 TTGGGCC
1 TTGGGCC
51749366 CTGGACTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
12 15 0.35
13 9 0.21
14 16 0.37
15 3 0.07
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (14 bp):
TTGGGCCATTGTAA
Found at i:51749433 original size:17 final size:17
Alignment explanation
Indices: 51749411--51749443 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
51749401 TCCAAATTTA
51749411 ACAAATTTAAATTTAAC
1 ACAAATTTAAATTTAAC
51749428 ACAAATTTAAATTTAA
1 ACAAATTTAAATTTAA
51749444 AAATTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
ACAAATTTAAATTTAAC
Found at i:51749474 original size:18 final size:18
Alignment explanation
Indices: 51749453--51749498 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
51749443 AAAATTGATT
51749453 TAAATTTAAATTT-TAAGA
1 TAAATTTAAATTTGTAA-A
*
51749471 TAAATTCAAATTTGTAAA
1 TAAATTTAAATTTGTAAA
*
51749489 TGAATTTAAA
1 TAAATTTAAA
51749499 ATTAATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (18 bp):
TAAATTTAAATTTGTAAA
Found at i:51749481 original size:24 final size:24
Alignment explanation
Indices: 51749429--51749483 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
51749419 AAATTTAACA
**
51749429 CAAATTTAAATTTAAAAATTGATT
1 CAAATTTAAATTTAAAAATAAATT
* * *
51749453 TAAATTTAAATTTTAAGATAAATT
1 CAAATTTAAATTTAAAAATAAATT
51749477 CAAATTT
1 CAAATTT
51749484 GTAAATGAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
CAAATTTAAATTTAAAAATAAATT
Found at i:51749496 original size:42 final size:41
Alignment explanation
Indices: 51749413--51749508 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 41
51749403 CAAATTTAAC
*
51749413 AAATTTAAATTTAACACAAATTTAAATTTAAAAATTGATTT
1 AAATTTAAATTTAACACAAATTCAAATTTAAAAATTGATTT
* * **
51749454 AAATTTAAATTTTAAGATAAATTCAAATTTGTAAA-TGAATTT
1 AAATTTAAA-TTTAACACAAATTCAAATTTAAAAATTG-ATTT
*
51749496 AAAATT-AATTTAA
1 AAATTTAAATTTAA
51749509 ACCAAATATA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
40 5 0.11
41 13 0.28
42 29 0.62
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (41 bp):
AAATTTAAATTTAACACAAATTCAAATTTAAAAATTGATTT
Found at i:51754349 original size:21 final size:21
Alignment explanation
Indices: 51754325--51754366 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
51754315 TAAATCTGAT
51754325 TCTTCAATGCTGC-TGATAAGC
1 TCTTC-ATGCTGCATGATAAGC
*
51754346 TCTTCATGCTGCATGCTAAGC
1 TCTTCATGCTGCATGATAAGC
51754367 CATCAGTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33
Consensus pattern (21 bp):
TCTTCATGCTGCATGATAAGC
Found at i:51760500 original size:3 final size:3
Alignment explanation
Indices: 51760492--51760520 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51760482 TATGAATAAG
51760492 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
51760521 GAGGTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:51761420 original size:153 final size:153
Alignment explanation
Indices: 51761128--51761429 Score: 358
Period size: 153 Copynumber: 2.0 Consensus size: 153
51761118 TCTTAGCGAC
* * * * * *
51761128 TGCAATCTTGGTGAAGGAGATATTCCTAGTGCTATTTCTTGTCTATCCTCCTTGATAACTCTTGA
1 TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
* *
51761193 ACTCAGCGGTAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAGGCTTCACTATC
66 ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAAGCTTCACTATC
51761258 TTGATTTGTCAAATTGCAGCCTG
131 TTGATTTGTCAAATTGCAGCCTG
* **
51761281 TGCAATATTGGTGAAGGAGATATTCCTGGTGATATTTCTGGCCTATCCTCATTGACATTTCTTGA
1 TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
* * * * * * * * * *
51761346 TCTTAGTGATAACAATTTCACCAGCATAGCTGCGTTTCTTACTC-ATCTTTCCAAGCTTGGAC-A
66 ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGA-CTCTCCAAGCTT-CACTA
*
51761409 TGTTAGA-TTGTCAAATTGCAG
129 TCTT-GATTTGTCAAATTGCAG
51761430 TGAGCTTGAA
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
152 1 0.01
153 119 0.96
154 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.35
Consensus pattern (153 bp):
TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAAGCTTCACTATC
TTGATTTGTCAAATTGCAGCCTG
Found at i:51763802 original size:21 final size:23
Alignment explanation
Indices: 51763778--51763830 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 23
51763768 TTTACATTAC
51763778 ATAAAATAAT-ATACT-T-TTTAA
1 ATAAAATAATCATA-TATCTTTAA
51763799 AT-AAATAATCATATATCTTTAA
1 ATAAAATAATCATATATCTTTAA
51763821 ATAATAATAA
1 ATAA-AATAA
51763831 AATAAACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 8 0.30
21 6 0.22
22 7 0.26
23 1 0.04
24 5 0.19
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.40
Consensus pattern (23 bp):
ATAAAATAATCATATATCTTTAA
Found at i:51767046 original size:69 final size:69
Alignment explanation
Indices: 51766932--51767061 Score: 188
Period size: 69 Copynumber: 1.9 Consensus size: 69
51766922 CCATCAACTC
* * ** ** *
51766932 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAGTTTTGCAGGGGTGAGCTGCTGCTGCCTTACCTT
1 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTACCTT
51766997 GGAA
66 GGAA
*
51767001 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGTTGCTGCTACCTTA
1 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTA
51767062 ACAAGTAGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (69 bp):
CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTACCTT
GGAA
Found at i:51767723 original size:11 final size:11
Alignment explanation
Indices: 51767707--51767731 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51767697 ACCACCTTTT
51767707 TCTTCGTTATC
1 TCTTCGTTATC
51767718 TCTTCGTTATC
1 TCTTCGTTATC
51767729 TCT
1 TCT
51767732 CGCGTGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.08, T:0.56
Consensus pattern (11 bp):
TCTTCGTTATC
Found at i:51768302 original size:17 final size:17
Alignment explanation
Indices: 51768280--51768313 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51768270 TTCAAACCTT
51768280 CCATTGAGATGCCAAAA
1 CCATTGAGATGCCAAAA
51768297 CCATTGAGATGCCAAAA
1 CCATTGAGATGCCAAAA
51768314 ATCATGTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (17 bp):
CCATTGAGATGCCAAAA
Found at i:51769107 original size:14 final size:16
Alignment explanation
Indices: 51769073--51769106 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
51769063 TACGACGCCC
51769073 AAAATTGACAACTTAA
1 AAAATTGACAACTTAA
*
51769089 AAAATTGA-AATTTAA
1 AAAATTGACAACTTAA
51769104 AAA
1 AAA
51769107 TACGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (16 bp):
AAAATTGACAACTTAA
Found at i:51772373 original size:24 final size:24
Alignment explanation
Indices: 51772320--51772382 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
51772310 TAGATTAATA
* *
51772320 AGAGTTTGACTTAAACAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
* * *
51772344 ATAGTTTAATTGAAACAAATAAAT
1 AGAGTTTAACTGAAACAAATAAAC
51772368 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
51772383 GATTATTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.29
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:51777214 original size:30 final size:30
Alignment explanation
Indices: 51777144--51777265 Score: 163
Period size: 30 Copynumber: 4.0 Consensus size: 30
51777134 TGATAAATGA
* *
51777144 TGAAAAAGTTCTGGGGTCAAAATGTATTTT
1 TGAAAAAGTTTTGGGGTCAAAATGTAATTT
* ** *
51777174 TTAGAAAAGTTTTAAGGTCAAAATGTAATTG
1 TGA-AAAAGTTTTGGGGTCAAAATGTAATTT
*
51777205 TGAAAAAGTTTTGTGGTCAAAATGTAATTT
1 TGAAAAAGTTTTGGGGTCAAAATGTAATTT
*
51777235 TGGAAAAGTTTTGGGGTCAAAATGTAATTT
1 TGAAAAAGTTTTGGGGTCAAAATGTAATTT
51777265 T
1 T
51777266 TGAATTGTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
30 55 0.70
31 24 0.30
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (30 bp):
TGAAAAAGTTTTGGGGTCAAAATGTAATTT
Found at i:51778317 original size:32 final size:32
Alignment explanation
Indices: 51778269--51778331 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
51778259 CTTCTTTTTT
*
51778269 TTTATTATTACAAAAAA-ATTTCATTATTAATA
1 TTTATTATTACAAAAAATATTT-ATTAATAATA
**
51778301 TTTATTATTATTAAAAATATTTATTAATAAT
1 TTTATTATTACAAAAAATATTTATTAATAAT
51778332 GTTATTCCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (32 bp):
TTTATTATTACAAAAAATATTTATTAATAATA
Found at i:51778946 original size:12 final size:14
Alignment explanation
Indices: 51778918--51778977 Score: 83
Period size: 14 Copynumber: 4.5 Consensus size: 14
51778908 TTGGGCCTAT
51778918 TTGGGCCATTGTAA
1 TTGGGCCATTGTAA
51778932 TTGGGCC-TT-TAA
1 TTGGGCCATTGTAA
51778944 TTGGGCC-TT-TAA
1 TTGGGCCATTGTAA
51778956 TTTGGGCCATTGTAA
1 -TTGGGCCATTGTAA
51778971 TTGGGCC
1 TTGGGCC
51778978 CTGGACTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
12 15 0.35
13 9 0.21
14 16 0.37
15 3 0.07
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (14 bp):
TTGGGCCATTGTAA
Found at i:51779045 original size:17 final size:17
Alignment explanation
Indices: 51779023--51779055 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
51779013 TCCAAATTTA
51779023 ACAAATTTAAATTTAAC
1 ACAAATTTAAATTTAAC
51779040 ACAAATTTAAATTTAA
1 ACAAATTTAAATTTAA
51779056 AAATTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
ACAAATTTAAATTTAAC
Found at i:51779086 original size:18 final size:18
Alignment explanation
Indices: 51779065--51779110 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
51779055 AAAATTGATT
51779065 TAAATTTAAATTT-TAAGA
1 TAAATTTAAATTTGTAA-A
*
51779083 TAAATTCAAATTTGTAAA
1 TAAATTTAAATTTGTAAA
*
51779101 TGAATTTAAA
1 TAAATTTAAA
51779111 ATTAATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (18 bp):
TAAATTTAAATTTGTAAA
Found at i:51779093 original size:24 final size:24
Alignment explanation
Indices: 51779041--51779095 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
51779031 AAATTTAACA
**
51779041 CAAATTTAAATTTAAAAATTGATT
1 CAAATTTAAATTTAAAAATAAATT
* * *
51779065 TAAATTTAAATTTTAAGATAAATT
1 CAAATTTAAATTTAAAAATAAATT
51779089 CAAATTT
1 CAAATTT
51779096 GTAAATGAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
CAAATTTAAATTTAAAAATAAATT
Found at i:51779108 original size:42 final size:41
Alignment explanation
Indices: 51779025--51779120 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 41
51779015 CAAATTTAAC
*
51779025 AAATTTAAATTTAACACAAATTTAAATTTAAAAATTGATTT
1 AAATTTAAATTTAACACAAATTCAAATTTAAAAATTGATTT
* * **
51779066 AAATTTAAATTTTAAGATAAATTCAAATTTGTAAA-TGAATTT
1 AAATTTAAA-TTTAACACAAATTCAAATTTAAAAATTG-ATTT
*
51779108 AAAATT-AATTTAA
1 AAATTTAAATTTAA
51779121 ACCAAATATA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
40 5 0.11
41 13 0.28
42 29 0.62
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (41 bp):
AAATTTAAATTTAACACAAATTCAAATTTAAAAATTGATTT
Found at i:51783959 original size:21 final size:21
Alignment explanation
Indices: 51783935--51783976 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
51783925 TAAATCTGAT
51783935 TCTTCAATGCTGC-TGATAAGC
1 TCTTC-ATGCTGCATGATAAGC
*
51783956 TCTTCATGCTGCATGCTAAGC
1 TCTTCATGCTGCATGATAAGC
51783977 CATCAGTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33
Consensus pattern (21 bp):
TCTTCATGCTGCATGATAAGC
Found at i:51789565 original size:3 final size:3
Alignment explanation
Indices: 51789557--51789585 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51789547 TATGAATAAG
51789557 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
51789586 GAGGTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:51790485 original size:153 final size:153
Alignment explanation
Indices: 51790193--51790494 Score: 358
Period size: 153 Copynumber: 2.0 Consensus size: 153
51790183 TCTTAGCGAC
* * * * * *
51790193 TGCAATCTTGGTGAAGGAGATATTCCTAGTGCTATTTCTTGTCTATCCTCCTTGATAACTCTTGA
1 TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
* *
51790258 ACTCAGCGGTAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAGGCTTCACTATC
66 ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAAGCTTCACTATC
51790323 TTGATTTGTCAAATTGCAGCCTG
131 TTGATTTGTCAAATTGCAGCCTG
* **
51790346 TGCAATATTGGTGAAGGAGATATTCCTGGTGATATTTCTGGCCTATCCTCATTGACATTTCTTGA
1 TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
* * * * * * * * * *
51790411 TCTTAGTGATAACAATTTCACCAGCATAGCTGCGTTTCTTACTC-ATCTTTCCAAGCTTGGAC-A
66 ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGA-CTCTCCAAGCTT-CACTA
*
51790474 TGTTAGA-TTGTCAAATTGCAG
129 TCTT-GATTTGTCAAATTGCAG
51790495 TGAGCTTGAA
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
152 1 0.01
153 119 0.96
154 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.35
Consensus pattern (153 bp):
TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAAGCTTCACTATC
TTGATTTGTCAAATTGCAGCCTG
Found at i:51792867 original size:21 final size:23
Alignment explanation
Indices: 51792843--51792895 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 23
51792833 TTTACATTAC
51792843 ATAAAATAAT-ATACT-T-TTTAA
1 ATAAAATAATCATA-TATCTTTAA
51792864 AT-AAATAATCATATATCTTTAA
1 ATAAAATAATCATATATCTTTAA
51792886 ATAATAATAA
1 ATAA-AATAA
51792896 AATAAACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 8 0.30
21 6 0.22
22 7 0.26
23 1 0.04
24 5 0.19
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.40
Consensus pattern (23 bp):
ATAAAATAATCATATATCTTTAA
Found at i:51796110 original size:69 final size:69
Alignment explanation
Indices: 51795996--51796125 Score: 188
Period size: 69 Copynumber: 1.9 Consensus size: 69
51795986 CCATCAACTC
* * ** ** *
51795996 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAGTTTTGCAGGGGTGAGCTGCTGCTGCCTTACCTT
1 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTACCTT
51796061 GGAA
66 GGAA
*
51796065 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGTTGCTGCTACCTTA
1 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTA
51796126 ACAAGTAGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (69 bp):
CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTACCTT
GGAA
Found at i:51796787 original size:11 final size:11
Alignment explanation
Indices: 51796771--51796795 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51796761 ACCACCTTTT
51796771 TCTTCGTTATC
1 TCTTCGTTATC
51796782 TCTTCGTTATC
1 TCTTCGTTATC
51796793 TCT
1 TCT
51796796 CGCGTGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.08, T:0.56
Consensus pattern (11 bp):
TCTTCGTTATC
Found at i:51797366 original size:17 final size:17
Alignment explanation
Indices: 51797344--51797377 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51797334 TTCAAACCTT
51797344 CCATTGAGATGCCAAAA
1 CCATTGAGATGCCAAAA
51797361 CCATTGAGATGCCAAAA
1 CCATTGAGATGCCAAAA
51797378 ATCATGTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (17 bp):
CCATTGAGATGCCAAAA
Found at i:51798172 original size:14 final size:16
Alignment explanation
Indices: 51798138--51798171 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
51798128 TACGACGCCC
51798138 AAAATTGACAACTTAA
1 AAAATTGACAACTTAA
*
51798154 AAAATTGA-AATTTAA
1 AAAATTGACAACTTAA
51798169 AAA
1 AAA
51798172 TACGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (16 bp):
AAAATTGACAACTTAA
Found at i:51801431 original size:24 final size:24
Alignment explanation
Indices: 51801378--51801440 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
51801368 TAGATTAATA
* *
51801378 AGAGTTTGACTTAAACAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
* * *
51801402 ATAGTTTAATTGAAACAAATAAAT
1 AGAGTTTAACTGAAACAAATAAAC
51801426 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
51801441 GATTATTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.29
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:51804815 original size:3 final size:3
Alignment explanation
Indices: 51804807--51804835 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51804797 AATGAATAAG
51804807 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
51804836 GAGGTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:51805734 original size:153 final size:153
Alignment explanation
Indices: 51805442--51805743 Score: 358
Period size: 153 Copynumber: 2.0 Consensus size: 153
51805432 TCTTAGCGAC
* * * * * *
51805442 TGCAATCTTGGTGAAGGAGATATTCCTAGTGCTATTTCTTGTCTATCCTCCTTGATAACTCTTGA
1 TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
* *
51805507 ACTCAGCGGTAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAGGCTTCACTATC
66 ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAAGCTTCACTATC
51805572 TTGATTTGTCAAATTGCAGCCTG
131 TTGATTTGTCAAATTGCAGCCTG
* **
51805595 TGCAATATTGGTGAAGGAGATATTCCTGGTGATATTTCTGGCCTATCCTCATTGACATTTCTTGA
1 TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
* * * * * * * * * *
51805660 TCTTAGTGATAACAATTTCACCAGCATAGCTGCGTTTCTTACTC-ATCTTTCCAAGCTTGGAC-A
66 ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGA-CTCTCCAAGCTT-CACTA
*
51805723 TGTTAGA-TTGTCAAATTGCAG
129 TCTT-GATTTGTCAAATTGCAG
51805744 TGAGCTTGAA
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
152 1 0.01
153 119 0.96
154 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.35
Consensus pattern (153 bp):
TGCAATATTGGTGAAGGAGATATTCCTAGTGATATTTCTGGCCTATCCTCATTGACAACTCTTGA
ACTCAGCGATAACAATTTCAACAGCATACCGGAGTCTCTTACTCGACTCTCCAAGCTTCACTATC
TTGATTTGTCAAATTGCAGCCTG
Found at i:51808115 original size:21 final size:23
Alignment explanation
Indices: 51808091--51808143 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 23
51808081 TTTACATTAC
51808091 ATAAAATAAT-ATACT-T-TTTAA
1 ATAAAATAATCATA-TATCTTTAA
51808112 AT-AAATAATCATATATCTTTAA
1 ATAAAATAATCATATATCTTTAA
51808134 ATAATAATAA
1 ATAA-AATAA
51808144 AATAAACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 8 0.30
21 6 0.22
22 7 0.26
23 1 0.04
24 5 0.19
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.40
Consensus pattern (23 bp):
ATAAAATAATCATATATCTTTAA
Found at i:51811358 original size:69 final size:69
Alignment explanation
Indices: 51811244--51811373 Score: 188
Period size: 69 Copynumber: 1.9 Consensus size: 69
51811234 CCATCAACTC
* * ** ** *
51811244 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAGTTTTGCAGGGGTGAGCTGCTGCTGCCTTACCTT
1 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTACCTT
51811309 GGAA
66 GGAA
*
51811313 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGTTGCTGCTACCTTA
1 CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTA
51811374 ACAAGTAGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (69 bp):
CTCCTTCAGCTTATCCCAAGCTTGTTTGGGAATCTCACAAAGGTGAGCTGCTGCTACCTTACCTT
GGAA
Found at i:51812035 original size:11 final size:11
Alignment explanation
Indices: 51812019--51812043 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51812009 ACCACCTTTT
51812019 TCTTCGTTATC
1 TCTTCGTTATC
51812030 TCTTCGTTATC
1 TCTTCGTTATC
51812041 TCT
1 TCT
51812044 CGCGTGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.08, T:0.56
Consensus pattern (11 bp):
TCTTCGTTATC
Found at i:51812614 original size:17 final size:17
Alignment explanation
Indices: 51812592--51812625 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51812582 TTCAAACCTT
51812592 CCATTGAGATGCCAAAA
1 CCATTGAGATGCCAAAA
51812609 CCATTGAGATGCCAAAA
1 CCATTGAGATGCCAAAA
51812626 ATCATGTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (17 bp):
CCATTGAGATGCCAAAA
Found at i:51813420 original size:14 final size:16
Alignment explanation
Indices: 51813386--51813419 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
51813376 TACGACGCCC
51813386 AAAATTGACAACTTAA
1 AAAATTGACAACTTAA
*
51813402 AAAATTGA-AATTTAA
1 AAAATTGACAACTTAA
51813417 AAA
1 AAA
51813420 TACGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (16 bp):
AAAATTGACAACTTAA
Found at i:51816680 original size:24 final size:24
Alignment explanation
Indices: 51816627--51816689 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
51816617 TAGATTAATA
* *
51816627 AGAGTTTGACTTAAACAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
* * *
51816651 ATAGTTTAATTGAAACAAATAAAT
1 AGAGTTTAACTGAAACAAATAAAC
51816675 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
51816690 GATTATTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.29
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:51821505 original size:14 final size:15
Alignment explanation
Indices: 51821486--51821514 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51821476 CAAGAAATGG
51821486 GAAGAAAAAT-TGTT
1 GAAGAAAAATGTGTT
51821500 GAAGAAAAATGTGTT
1 GAAGAAAAATGTGTT
51821515 AATGAACCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (15 bp):
GAAGAAAAATGTGTT
Found at i:51832372 original size:14 final size:15
Alignment explanation
Indices: 51832353--51832382 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51832343 CAAGAAATGG
51832353 GAAGAAAAAT-TGTT
1 GAAGAAAAATGTGTT
51832367 GAAGAAAAATGTGTT
1 GAAGAAAAATGTGTT
51832382 G
1 G
51832383 GTGAACCTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (15 bp):
GAAGAAAAATGTGTT
Found at i:51840252 original size:14 final size:15
Alignment explanation
Indices: 51840233--51840263 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
51840223 CAAGAAGTGG
51840233 GAAGAAAAAT-TGTT
1 GAAGAAAAATGTGTT
51840247 GAAGAAAAATGTGTT
1 GAAGAAAAATGTGTT
51840262 GA
1 GA
51840264 CGAACCTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (15 bp):
GAAGAAAAATGTGTT
Found at i:51851166 original size:14 final size:15
Alignment explanation
Indices: 51851147--51851177 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
51851137 CAAGAAGTGG
51851147 GAAGAAAAAT-TGTT
1 GAAGAAAAATGTGTT
51851161 GAAGAAAAATGTGTT
1 GAAGAAAAATGTGTT
51851176 GA
1 GA
51851178 CGAACCTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (15 bp):
GAAGAAAAATGTGTT
Found at i:51853189 original size:9 final size:9
Alignment explanation
Indices: 51853175--51853200 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
51853165 CATTAACCAA
51853175 AAAACTCTT
1 AAAACTCTT
51853184 AAAACTCTT
1 AAAACTCTT
51853193 AAAACTCT
1 AAAACTCT
51853201 ATAATTATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (9 bp):
AAAACTCTT
Found at i:51859230 original size:2 final size:2
Alignment explanation
Indices: 51859223--51859265 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
51859213 TTATTTTCAT
51859223 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51859265 T
1 T
51859266 TCACTTACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:51862059 original size:9 final size:9
Alignment explanation
Indices: 51862047--51862090 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
51862037 TAGTATTACA
51862047 TATAAAAAT
1 TATAAAAAT
51862056 TATAAAAAT
1 TATAAAAAT
* *
51862065 TGTAAAATTT
1 TATAAAA-AT
51862075 TATAAAAAT
1 TATAAAAAT
51862084 TATAAAA
1 TATAAAA
51862091 TAGATCGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 23 0.77
10 7 0.23
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (9 bp):
TATAAAAAT
Found at i:51862079 original size:19 final size:19
Alignment explanation
Indices: 51862055--51862091 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
51862045 CATATAAAAA
*
51862055 TTATAAAAATTGTAAAATT
1 TTATAAAAATTATAAAATT
51862074 TTATAAAAATTATAAAAT
1 TTATAAAAATTATAAAAT
51862092 AGATCGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (19 bp):
TTATAAAAATTATAAAATT
Found at i:51870067 original size:23 final size:23
Alignment explanation
Indices: 51870003--51870068 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
51869993 TTTAACGTTC
*
51870003 ACGAACATATTCATTTAAC-TTAA
1 ACGAACATATTCA-TCAACATTAA
* * *
51870026 TCGAACATGTTCAACAACATTAA
1 ACGAACATATTCATCAACATTAA
*
51870049 ACGAACATATTCATGAACAT
1 ACGAACATATTCATCAACAT
51870069 ATAATTGAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 3 0.09
23 31 0.91
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.29
Consensus pattern (23 bp):
ACGAACATATTCATCAACATTAA
Found at i:51873252 original size:29 final size:25
Alignment explanation
Indices: 51873209--51873270 Score: 65
Period size: 24 Copynumber: 2.4 Consensus size: 25
51873199 ATTATTTGAA
51873209 ATTA-ATTAATAATAATACATACAATATAT
1 ATTATATTAATAATAA-A-A-A-AAT-TAT
51873238 ATTATATTAA-AATAAAAAAATTAT
1 ATTATATTAATAATAAAAAAATTAT
51873262 ATTATATTA
1 ATTATATTA
51873271 TGAGTAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
24 12 0.38
25 3 0.09
26 1 0.03
27 1 0.03
28 1 0.03
29 9 0.28
30 5 0.16
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (25 bp):
ATTATATTAATAATAAAAAAATTAT
Found at i:51873567 original size:3 final size:3
Alignment explanation
Indices: 51873561--51873586 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51873551 ATAATTTTAT
51873561 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
51873587 TGACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:51881278 original size:20 final size:21
Alignment explanation
Indices: 51881242--51881280 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51881232 TCAGTAAAAT
51881242 AAATAATTGATAAAATATATC
1 AAATAATTGATAAAATATATC
*
51881263 AAATAATTTA-AAAATATA
1 AAATAATTGATAAAATATA
51881281 AATTCAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (21 bp):
AAATAATTGATAAAATATATC
Found at i:51883346 original size:161 final size:159
Alignment explanation
Indices: 51883014--51883626 Score: 693
Period size: 161 Copynumber: 3.8 Consensus size: 159
51883004 GAAAAATAAC
* * * * * * *
51883014 CGAACTTTTTGAGTTTCAACCTCACCATATAAGTCTTTTTTTTATCTCACAATTGAGTTCGGAGG
1 CGAACTTTTTGGGTTTCAACCTCACCCTATAAGGCTTTCTTTTATCTGACAATCGAGTTTGGAGG
* * * * ** *
51883079 CTAGGTATGTTGGTTTCTTATCTGAAATTTTCGGGGCAAGTTGTGGGGCAGTTCTAGATAGAATC
66 CTA-GCATGTTGGTTTCTTAGCTGAAATTTTCAGGGCAGGTTG-GGGGTGGTTCTAGATAAAATC
* * *
51883144 CACCTTGCCTGAACTTATATGGGGGAAACAGT
129 CACCTTGCC-CAACTTATATGGGAGAAACAAT
*
51883176 CGAACTTTTTGGGTTTCAACCTCACCCTATAAGGCTTTCTTTTATCTGACAATCGAGTTTGGAAG
1 CGAACTTTTTGGGTTTCAACCTCACCCTATAAGGCTTTCTTTTATCTGACAATCGAGTTTGGAGG
* *
51883241 CTAGCGTGTTGGTTTCTTAGCTGAAATTTTCAGGGCAGGTTGGGGGTGGTTCTACATAAAATCCA
66 CTAGCATGTTGGTTTCTTAGCTGAAATTTTCAGGGCAGGTTGGGGGTGGTTCTAGATAAAATCCA
51883306 CCTTGCCCAAACTTATATGGGAGAAACGAAT
131 CCTTGCCC-AACTTATATGGGAGAAAC-AAT
* * * *
51883337 AGAACTTTTTGGGTTTCAACCTGACACTATAGGGCTTTCTTTTATCTGACAATCGAGTTTGGAGG
1 CGAACTTTTTGGGTTTCAACCTCACCCTATAAGGCTTTCTTTTATCTGACAATCGAGTTTGGAGG
* * * *
51883402 CTAGCATGTTGGCTTCTTAGCTGAAATTTTCAGAGCAGGTTGCGGGTGGTTCTAGATAAAATTCA
66 CTAGCATGTTGGTTTCTTAGCTGAAATTTTCAGGGCAGGTTGGGGGTGGTTCTAGATAAAATCCA
* * * *
51883467 CCTTGCCC--C---GATGAGGAAAAATAAC
131 CCTTGCCCAACTTATATG-GGAGAAACAAT
* ** * * *
51883492 CCAACTTTTCAGGTTTCAACCTGACCTTAT-AGGTCTTTCTTTTATCTGACAATCGAGTTCAGG-
1 CGAACTTTTTGGGTTTCAACCTCACCCTATAAGG-CTTTCTTTTATCTGACAATCGAGTT-TGGA
* * ** *
51883555 GGCTAGGCATGTTAGTTAT-TTAGCTGAAACTTTCAGGGCATATTGGGGGTGGTTTTAGATAAAA
64 GGCTA-GCATGTTGGTT-TCTTAGCTGAAATTTTCAGGGCAGGTTGGGGGTGGTTCTAGATAAAA
51883619 TCCACCTT
127 TCCACCTT
51883627 CTCAATATTT
Statistics
Matches: 392, Mismatches: 52, Indels: 20
0.84 0.11 0.04
Matches are distributed among these distances:
154 2 0.01
155 59 0.15
156 63 0.16
157 1 0.00
158 1 0.00
160 43 0.11
161 163 0.42
162 60 0.15
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (159 bp):
CGAACTTTTTGGGTTTCAACCTCACCCTATAAGGCTTTCTTTTATCTGACAATCGAGTTTGGAGG
CTAGCATGTTGGTTTCTTAGCTGAAATTTTCAGGGCAGGTTGGGGGTGGTTCTAGATAAAATCCA
CCTTGCCCAACTTATATGGGAGAAACAAT
Found at i:51885426 original size:19 final size:20
Alignment explanation
Indices: 51885404--51885441 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
51885394 ATATTAATTA
51885404 ATTTAAATATTA-TTTAAAT
1 ATTTAAATATTACTTTAAAT
**
51885423 ATTTATTTATTACTTTAAA
1 ATTTAAATATTACTTTAAA
51885442 CACATGTCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTAAATATTACTTTAAAT
Found at i:51885551 original size:14 final size:13
Alignment explanation
Indices: 51885519--51885550 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
51885509 CTTAAACCAA
51885519 ACTTTTAAAAATC
1 ACTTTTAAAAATC
*
51885532 ACTTTTGAAAATC
1 ACTTTTAAAAATC
51885545 ACTTTT
1 ACTTTT
51885551 TCAAAGTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.44
Consensus pattern (13 bp):
ACTTTTAAAAATC
Found at i:51888507 original size:6 final size:6
Alignment explanation
Indices: 51888462--51888490 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
51888452 TAAAATGTTC
51888462 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
51888491 ATTCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:51888623 original size:29 final size:30
Alignment explanation
Indices: 51888591--51888647 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
51888581 TTCGTTAAAA
*
51888591 AATAAC-AATTCA-ATTCTTTTTAAAAGTTT
1 AATAACAAATT-AGATTATTTTTAAAAGTTT
*
51888620 AATATCAAATTAGATTATTTTTAAAAGT
1 AATAACAAATTAGATTATTTTTAAAAGT
51888648 ATAAGAGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (30 bp):
AATAACAAATTAGATTATTTTTAAAAGTTT
Found at i:51892416 original size:24 final size:22
Alignment explanation
Indices: 51892389--51892433 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
51892379 AAATTCGTTA
*
51892389 AAAGAAATGAAAAAGAGAAAAAAT
1 AAAG-AAT-AAAAAAAGAAAAAAT
51892413 AAAGAATAAAAAAAGAAAAAA
1 AAAGAATAAAAAAAGAAAAAA
51892434 GAATATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 3 0.15
24 4 0.20
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (22 bp):
AAAGAATAAAAAAAGAAAAAAT
Found at i:51892443 original size:17 final size:18
Alignment explanation
Indices: 51892413--51892450 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
51892403 GAGAAAAAAT
51892413 AAAGAATAAAAAAAGAAA
1 AAAGAATAAAAAAAGAAA
*
51892431 AAAGAAT-ATAAAAGAAA
1 AAAGAATAAAAAAAGAAA
51892448 AAA
1 AAA
51892451 AATTAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.08
Consensus pattern (18 bp):
AAAGAATAAAAAAAGAAA
Found at i:51892451 original size:18 final size:17
Alignment explanation
Indices: 51892406--51892452 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
51892396 TGAAAAAGAG
*
51892406 AAAAAATAAAGAATAAA
1 AAAAAAAAAAGAATAAA
51892423 AAAAGAAAAAAGAATATAA
1 AAAA-AAAAAAGAATA-AA
51892442 AAGAAAAAAAA
1 AA-AAAAAAAA
51892453 TTAAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 4 0.15
18 10 0.38
19 10 0.38
20 2 0.08
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (17 bp):
AAAAAAAAAAGAATAAA
Found at i:51893162 original size:1 final size:1
Alignment explanation
Indices: 51893158--51893186 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
51893148 ACTCCCCCAA
51893158 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
51893187 AAAAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:51901210 original size:30 final size:31
Alignment explanation
Indices: 51901174--51901241 Score: 111
Period size: 30 Copynumber: 2.2 Consensus size: 31
51901164 TTAATGTAAT
* *
51901174 ATTTGGTATTTGAATTTGAC-ATTTTTTTTA
1 ATTTGGTACTTGAATTTGACAATTTTTCTTA
51901204 ATTTGGTACTTGAATTTGACAATTTTTCTTA
1 ATTTGGTACTTGAATTTGACAATTTTTCTTA
51901235 ATTTGGT
1 ATTTGGT
51901242 TCCTAAACTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 19 0.54
31 16 0.46
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.56
Consensus pattern (31 bp):
ATTTGGTACTTGAATTTGACAATTTTTCTTA
Found at i:51901268 original size:60 final size:61
Alignment explanation
Indices: 51901202--51901342 Score: 160
Period size: 62 Copynumber: 2.3 Consensus size: 61
51901192 ACATTTTTTT
* * * *
51901202 TAATTTGGTACTTGAATTTGACA-ATTTTTCTTAATTTGGTTCCTAAACTTTTTTTGGATC
1 TAATTTGCTACCTAAATTTGACATATTTTTCTTAATTTGGTACCTAAACTTTTTTTGGATC
* * ** *
51901262 TAATTTGCTACCTAAATTTGATATTTTTTTTCTTAATTTGGTACCTAAGTTTTTTTTAGAT-
1 TAATTTGCTACCTAAATTTGACA-TATTTTTCTTAATTTGGTACCTAAACTTTTTTTGGATC
*
51901323 TCAATTTGATACCTAAATTT
1 T-AATTTGCTACCTAAATTT
51901343 ATTAAATATT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
60 19 0.28
61 1 0.01
62 48 0.71
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (61 bp):
TAATTTGCTACCTAAATTTGACATATTTTTCTTAATTTGGTACCTAAACTTTTTTTGGATC
Found at i:51901309 original size:62 final size:62
Alignment explanation
Indices: 51901226--51901342 Score: 173
Period size: 62 Copynumber: 1.9 Consensus size: 62
51901216 AATTTGACAA
* * *
51901226 TTTTTCTTAATTTGGTTCCTAAACTTTTTTTGGA-TCTAATTTGCTACCTAAATTTGATATTT
1 TTTTTCTTAATTTGGTACCTAAACTTTTTTTAGATTC-AATTTGATACCTAAATTTGATATTT
**
51901288 TTTTTCTTAATTTGGTACCTAAGTTTTTTTTAGATTCAATTTGATACCTAAATTT
1 TTTTTCTTAATTTGGTACCTAAACTTTTTTTAGATTCAATTTGATACCTAAATTT
51901343 ATTAAATATT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
62 47 0.96
63 2 0.04
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.55
Consensus pattern (62 bp):
TTTTTCTTAATTTGGTACCTAAACTTTTTTTAGATTCAATTTGATACCTAAATTTGATATTT
Found at i:51901549 original size:58 final size:60
Alignment explanation
Indices: 51901480--51901592 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
51901470 AATATTAAAA
*
51901480 AAAAAGATTAAGTAT-CAAATT-AAAAAAAAA-GTCAAGTTCGGGTACCAAATTAGATTCC
1 AAAAAGATTAAGT-TCCAAATTAAAAAAAAAATGTCAAGTTCAGGTACCAAATTAGATTCC
* * * *
51901538 AAAAAGTTTAAGTTCCAACTTAAAAAAAAAATGTCAAGTTTAGGTACCAAGTTAG
1 AAAAAGATTAAGTTCCAAATTAAAAAAAAAATGTCAAGTTCAGGTACCAAATTAG
51901593 GAAACAGTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
57 1 0.02
58 17 0.36
59 9 0.19
60 20 0.43
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.26
Consensus pattern (60 bp):
AAAAAGATTAAGTTCCAAATTAAAAAAAAAATGTCAAGTTCAGGTACCAAATTAGATTCC
Found at i:51906078 original size:17 final size:17
Alignment explanation
Indices: 51906043--51906078 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51906033 TTTAAAATAA
* *
51906043 ATTTAAAAAAGATTTAT
1 ATTTAAAAAACATTAAT
51906060 ATTTAAAAAACATTAAT
1 ATTTAAAAAACATTAAT
51906077 AT
1 AT
51906079 AGGTCAAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (17 bp):
ATTTAAAAAACATTAAT
Found at i:51906079 original size:19 final size:19
Alignment explanation
Indices: 51906038--51906079 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
51906028 ACAAATTTAA
* *
51906038 AATAAATTTAAAAAAGATT
1 AATATATTTAAAAAACATT
51906057 --TATATTTAAAAAACATT
1 AATATATTTAAAAAACATT
51906074 AATATA
1 AATATA
51906080 GGTCAAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
17 15 0.79
19 4 0.21
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
AATATATTTAAAAAACATT
Found at i:51906141 original size:22 final size:20
Alignment explanation
Indices: 51906109--51906158 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
51906099 ATACCTCAAA
*
51906109 AATAATAACAAAATTAAAAT
1 AATAATAACAAAATTAAAAC
* *
51906129 AATAACTATACAATATTCAAAC
1 AATAA-TA-ACAAAATTAAAAC
51906151 AATAATAA
1 AATAATAA
51906159 TAATATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 6 0.24
21 4 0.16
22 15 0.60
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (20 bp):
AATAATAACAAAATTAAAAC
Found at i:51906435 original size:13 final size:13
Alignment explanation
Indices: 51906417--51906443 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51906407 AAATGTTATA
51906417 TATTTTTATTTTT
1 TATTTTTATTTTT
51906430 TATTTTTATTTTT
1 TATTTTTATTTTT
51906443 T
1 T
51906444 TACTACACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:51910091 original size:87 final size:87
Alignment explanation
Indices: 51909997--51910258 Score: 400
Period size: 87 Copynumber: 3.0 Consensus size: 87
51909987 TGGCAAATAG
* * *
51909997 AAAAAATATGTTTTAAATTCAAGTTGATTTAACAATCAATGTCAAATATTGAAAATAAAAATTAT
1 AAAAAATATATTTTAAATTCAAGTTGATTTAACAATTAATGTCAAAGATTGAAAATAAAAATTAT
51910062 TTAAATTTTAATTTGTAGATTT
66 TTAAATTTTAATTTGTAGATTT
* * * * * *
51910084 AAAAAATATATTTTAGATTGAAGTTGATCTAACAATTAATGTCAAAGATCGAAAATGAAAATTGT
1 AAAAAATATATTTTAAATTCAAGTTGATTTAACAATTAATGTCAAAGATTGAAAATAAAAATTAT
*
51910149 TTGAATTTTAATTTGTAGATTT
66 TTAAATTTTAATTTGTAGATTT
*
51910171 AAAAAATATACTTTAAATTCAAGTTGATTTAA-AGATTAATGTCAAAGATTGAAAATAAAAATTA
1 AAAAAATATATTTTAAATTCAAGTTGATTTAACA-ATTAATGTCAAAGATTGAAAATAAAAATTA
*
51910235 TTTAAATTTTAATTTGTAAATTT
65 TTTAAATTTTAATTTGTAGATTT
51910258 A
1 A
51910259 TAACATTTAA
Statistics
Matches: 155, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
86 1 0.01
87 154 0.99
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (87 bp):
AAAAAATATATTTTAAATTCAAGTTGATTTAACAATTAATGTCAAAGATTGAAAATAAAAATTAT
TTAAATTTTAATTTGTAGATTT
Found at i:51912506 original size:29 final size:30
Alignment explanation
Indices: 51912456--51912514 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
51912446 ACCAATATAA
51912456 TACAAAAATAATAATTAAATACCAAAATGG
1 TACAAAAATAATAATTAAATACCAAAATGG
* *
51912486 TACAAAAA-AATATTTATATACCAAAATGG
1 TACAAAAATAATAATTAAATACCAAAATGG
51912515 GTTATTTATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 19 0.70
30 8 0.30
ACGTcount: A:0.58, C:0.10, G:0.07, T:0.25
Consensus pattern (30 bp):
TACAAAAATAATAATTAAATACCAAAATGG
Found at i:51913821 original size:21 final size:21
Alignment explanation
Indices: 51913797--51913849 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
51913787 TTATTTTTTT
51913797 ATATAAAATAAATTTAAAAAA
1 ATATAAAATAAATTTAAAAAA
* * **
51913818 ATATATAATACA-TTAAAAGT
1 ATATAAAATAAATTTAAAAAA
51913838 AT-TAAAATAAAT
1 ATATAAAATAAAT
51913850 GTTTCCCAAC
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
19 7 0.28
20 8 0.32
21 10 0.40
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
ATATAAAATAAATTTAAAAAA
Found at i:51914360 original size:18 final size:18
Alignment explanation
Indices: 51914337--51914371 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
51914327 TGATTAAAAC
51914337 CTTACACCTCAAAAACTT
1 CTTACACCTCAAAAACTT
51914355 CTTACACCTCAAAAACT
1 CTTACACCTCAAAAACT
51914372 CCCTCCAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.34, G:0.00, T:0.26
Consensus pattern (18 bp):
CTTACACCTCAAAAACTT
Found at i:51916646 original size:14 final size:15
Alignment explanation
Indices: 51916627--51916658 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
51916617 TTTTTCATTG
51916627 AAAATCATTTTT-GA
1 AAAATCATTTTTAGA
51916641 AAAATCATTTTTAGA
1 AAAATCATTTTTAGA
51916656 AAA
1 AAA
51916659 TAAATTGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (15 bp):
AAAATCATTTTTAGA
Found at i:51916659 original size:14 final size:13
Alignment explanation
Indices: 51916624--51916659 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
51916614 ATTTTTTTCA
51916624 TTGAAAATCATTT
1 TTGAAAATCATTT
51916637 TTGAAAAATCATTT
1 TTG-AAAATCATTT
51916651 TTAGAAAAT
1 TT-GAAAAT
51916660 AAATTGGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 3 0.14
14 17 0.81
15 1 0.05
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (13 bp):
TTGAAAATCATTT
Found at i:51917035 original size:23 final size:23
Alignment explanation
Indices: 51917004--51917064 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 23
51916994 ATATTATTAT
*
51917004 TATTATTAAAATATTAATATA-AA
1 TATTTTTAAAATATTAATA-AGAA
*
51917027 TATTTTTAATAATA-TATTAAGAA
1 TATTTTTAA-AATATTAATAAGAA
51917050 TATTGTTTAAAATAT
1 TATT-TTTAAAATAT
51917065 AAAGTTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
22 1 0.03
23 22 0.69
24 9 0.28
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (23 bp):
TATTTTTAAAATATTAATAAGAA
Found at i:51919405 original size:12 final size:12
Alignment explanation
Indices: 51919388--51919415 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
51919378 ATTTCATAAA
51919388 TTAAAAATTTAT
1 TTAAAAATTTAT
51919400 TTAAAAATTTAT
1 TTAAAAATTTAT
51919412 TTAA
1 TTAA
51919416 GACGCCAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTAAAAATTTAT
Found at i:51921059 original size:22 final size:21
Alignment explanation
Indices: 51921033--51921073 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51921023 TGACAATGGG
*
51921033 AAAATAATTTAAATTTATATGA
1 AAAATAA-TTAAAATTATATGA
*
51921055 AAAATGATTAAAATTATAT
1 AAAATAATTAAAATTATAT
51921074 TCAGAAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (21 bp):
AAAATAATTAAAATTATATGA
Found at i:51921284 original size:31 final size:31
Alignment explanation
Indices: 51921230--51921294 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
51921220 GTGAAAATTG
* *
51921230 AATAAAATTAAAATTTATATATAATATTATA
1 AATAAAATTAAAATTTACATATAATATTAAA
* *
51921261 AATAAAATTAAAATTTACGTATAATTTTAAA
1 AATAAAATTAAAATTTACATATAATATTAAA
51921292 AAT
1 AAT
51921295 TATTTTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (31 bp):
AATAAAATTAAAATTTACATATAATATTAAA
Found at i:51929096 original size:18 final size:20
Alignment explanation
Indices: 51929064--51929106 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
51929054 TTAATTTCTC
*
51929064 AAAAAATATTAAATATTA-T
1 AAAAAATATTAAATAATATT
*
51929083 AAAAAATA-TCAATAATATT
1 AAAAAATATTAAATAATATT
51929102 AAAAA
1 AAAAA
51929107 GAATCTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAAATATTAAATAATATT
Found at i:51933340 original size:25 final size:23
Alignment explanation
Indices: 51933314--51933398 Score: 116
Period size: 23 Copynumber: 3.6 Consensus size: 23
51933304 TACTGTTCAG
* *
51933314 CACTGTGTGTGCTCTCTGTTATTAG
1 CACTTTGTGTGCTCTCTG--ATTAA
* *
51933339 CACTTCGTGTCCTCTCTGATTAA
1 CACTTTGTGTGCTCTCTGATTAA
51933362 CACTTTGTGTGCTCTCTGATTAA
1 CACTTTGTGTGCTCTCTGATTAA
51933385 CACTTTGTGTGCTC
1 CACTTTGTGTGCTC
51933399 AGTACTTTGT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
23 39 0.72
25 15 0.28
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.42
Consensus pattern (23 bp):
CACTTTGTGTGCTCTCTGATTAA
Found at i:51936823 original size:17 final size:17
Alignment explanation
Indices: 51936803--51936836 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
51936793 AATATTAAAG
51936803 TTAATATAGTATT-TATT
1 TTAATA-AGTATTATATT
51936820 TTAATAAGTATTATATT
1 TTAATAAGTATTATATT
51936837 AATTTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (17 bp):
TTAATAAGTATTATATT
Found at i:51936838 original size:15 final size:17
Alignment explanation
Indices: 51936803--51936839 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
51936793 AATATTAAAG
*
51936803 TTAATATAGTATTTATT
1 TTAATATAGTATTTATA
51936820 TTAATA-AGTA-TTATA
1 TTAATATAGTATTTATA
51936835 TTAAT
1 TTAAT
51936840 TTAATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 9 0.47
16 4 0.21
17 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (17 bp):
TTAATATAGTATTTATA
Found at i:51940935 original size:17 final size:17
Alignment explanation
Indices: 51940913--51940951 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
51940903 GAGGGGATTT
51940913 TGTTTTAGAAAAACAGG
1 TGTTTTAGAAAAACAGG
51940930 TGTTTTAGAAAAACAGG
1 TGTTTTAGAAAAACAGG
51940947 TGTTT
1 TGTTT
51940952 GCTTGACATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (17 bp):
TGTTTTAGAAAAACAGG
Found at i:51945211 original size:44 final size:44
Alignment explanation
Indices: 51945161--51945251 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 44
51945151 ATAATTGTAA
* *
51945161 ATTAAATTCA-AAATATTTTTAAATGTGTAATAATCACAATTTCT
1 ATTAAATT-ATAAATATTTTTAAATGTATAATAATCACAAGTTCT
*
51945205 ATTAAATTATAAATATTTTTAAATGTATAATTATCACAAGTTCT
1 ATTAAATTATAAATATTTTTAAATGTATAATAATCACAAGTTCT
51945249 ATT
1 ATT
51945252 TTATTTCAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 1 0.02
44 42 0.98
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (44 bp):
ATTAAATTATAAATATTTTTAAATGTATAATAATCACAAGTTCT
Found at i:51945396 original size:15 final size:15
Alignment explanation
Indices: 51945376--51945417 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
51945366 ATTATATAAT
51945376 ATATAAAATAATGTA
1 ATATAAAATAATGTA
* * *
51945391 ATATAATATATTATA
1 ATATAAAATAATGTA
51945406 ATATAAAA-AATG
1 ATATAAAATAATG
51945418 GTCCGGGTCA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (15 bp):
ATATAAAATAATGTA
Found at i:51946326 original size:12 final size:12
Alignment explanation
Indices: 51946309--51946350 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
51946299 TTTATAAATT
51946309 ATAAAAAATTAA
1 ATAAAAAATTAA
**
51946321 AT-AAAAATTTT
1 ATAAAAAATTAA
*
51946332 TTAAAAAATTAA
1 ATAAAAAATTAA
51946344 ATAAAAA
1 ATAAAAA
51946351 TTTTTTCATT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
ATAAAAAATTAA
Found at i:51946340 original size:23 final size:23
Alignment explanation
Indices: 51946310--51946356 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
51946300 TTATAAATTA
51946310 TAAAAAATTAAATAAAAATTTTT
1 TAAAAAATTAAATAAAAATTTTT
51946333 TAAAAAATTAAATAAAAATTTTT
1 TAAAAAATTAAATAAAAATTTTT
51946356 T
1 T
51946357 CATTTTAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAAAAATTAAATAAAAATTTTT
Found at i:51948630 original size:92 final size:92
Alignment explanation
Indices: 51948473--51948663 Score: 364
Period size: 92 Copynumber: 2.1 Consensus size: 92
51948463 ATGTTTGTCC
*
51948473 AATTATTTGTCTTGTTACAAAACAGACACGTACATGCAATCTGTTTACTTGTATATCCATGAAGA
1 AATTATTAGTCTTGTTACAAAACAGACACGTACATGCAATCTGTTTACTTGTATATCCATGAAGA
51948538 AGGAAATCCGTTGACACAAACTTTAAT
66 AGGAAATCCGTTGACACAAACTTTAAT
51948565 AATTATTAGTCTTGTTACAAAACAGACACGTACATGCAATCTGTTTACTTGTATATCCATGAAGA
1 AATTATTAGTCTTGTTACAAAACAGACACGTACATGCAATCTGTTTACTTGTATATCCATGAAGA
51948630 AGGAAATCCGTTGACACAAACTTTAAT
66 AGGAAATCCGTTGACACAAACTTTAAT
*
51948657 AACTATT
1 AATTATT
51948664 CCTAGGTACA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 97 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (92 bp):
AATTATTAGTCTTGTTACAAAACAGACACGTACATGCAATCTGTTTACTTGTATATCCATGAAGA
AGGAAATCCGTTGACACAAACTTTAAT
Found at i:51951425 original size:161 final size:161
Alignment explanation
Indices: 51951149--51951639 Score: 883
Period size: 161 Copynumber: 3.0 Consensus size: 161
51951139 ATTTATTAAA
* * * * *
51951149 ATAATTATAATTACTTATTTTTTATTAATGAAAACATATTTAAAATTATTTTTTAAAAACCACAA
1 ATAATTATAATTACTTATTTTTTATAAATTAAAATATAGTTAAATTTATTTTTTAAAAACCACAA
51951214 ATGTTATGCATAATTAGTACAAGATAAATATAAAATTTATACATTAACTTTGATTTAATTTGTAA
66 ATGTTATGC-----T-GTACAAGATAAATATAAAATTTATACATTAACTTTGATTTAATTTGTAA
51951279 TTTGATACATAAATTTTGATTTTGTACAATTATATAT
125 TTTGATACATAAATTTTGATTTTGTACAATTATATAT
51951316 ATAATTATAATTACTTATTTTTTATAAATTAAAATATAGTTAAATTTATTTTTTAAAAACCACAA
1 ATAATTATAATTACTTATTTTTTATAAATTAAAATATAGTTAAATTTATTTTTTAAAAACCACAA
51951381 ATGTTATGCTGTACAAGATAAATATAAAATTTATACATTAACTTTGATTTAATTTGTAATTTGAT
66 ATGTTATGCTGTACAAGATAAATATAAAATTTATACATTAACTTTGATTTAATTTGTAATTTGAT
51951446 ACATAAATTTTGATTTTGTACAATTATATAT
131 ACATAAATTTTGATTTTGTACAATTATATAT
51951477 ATAATTATAATTACTTATTTTTTATAAATTAAAATATAGTTAAATTTATTTTTTAAAAACCACAA
1 ATAATTATAATTACTTATTTTTTATAAATTAAAATATAGTTAAATTTATTTTTTAAAAACCACAA
51951542 ATGTTATGCTGTACAAGATAAATATAAAATTTATACATTAACTTTGATTTAATTTGTAATTTGAT
66 ATGTTATGCTGTACAAGATAAATATAAAATTTATACATTAACTTTGATTTAATTTGTAATTTGAT
51951607 ACATAAATTTTGATTTTGTACAATTATATAT
131 ACATAAATTTTGATTTTGTACAATTATATAT
51951638 AT
1 AT
51951640 TTAAAAAAAT
Statistics
Matches: 319, Mismatches: 5, Indels: 6
0.97 0.02 0.02
Matches are distributed among these distances:
161 249 0.78
162 1 0.00
167 69 0.22
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (161 bp):
ATAATTATAATTACTTATTTTTTATAAATTAAAATATAGTTAAATTTATTTTTTAAAAACCACAA
ATGTTATGCTGTACAAGATAAATATAAAATTTATACATTAACTTTGATTTAATTTGTAATTTGAT
ACATAAATTTTGATTTTGTACAATTATATAT
Done.