Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 172 of 182
Found at i:51951842 original size:28 final size:29
Alignment explanation
Indices: 51951787--51951845 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
51951777 AAAATTGAAT
*
51951787 CAAATAAAAATACCATATATAAAATTACA
1 CAAATAAAAATACCATATACAAAATTACA
* **
51951816 CAAATAAAAAT-TCATATACAATTTTACA
1 CAAATAAAAATACCATATACAAAATTACA
51951844 CA
1 CA
51951846 CTAAATCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (29 bp):
CAAATAAAAATACCATATACAAAATTACA
Found at i:51953114 original size:31 final size:29
Alignment explanation
Indices: 51953048--51953114 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 29
51953038 AGTTAGGCCT
* *
51953048 AATTTTAAATTTCTTATTAAATCTTTTAA
1 AATTTTAAATTTCTTATTAAACCTTTCAA
51953077 ATATTTTAAAATTT-TTAATTAAACCCTTTCAA
1 A-ATTTT-AAATTTCTT-ATTAAA-CCTTTCAA
51953109 AATTTT
1 AATTTT
51953115 TGTTAATTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 1 0.03
30 7 0.22
31 17 0.53
32 7 0.22
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (29 bp):
AATTTTAAATTTCTTATTAAACCTTTCAA
Found at i:51954321 original size:29 final size:30
Alignment explanation
Indices: 51954289--51954345 Score: 91
Period size: 29 Copynumber: 1.9 Consensus size: 30
51954279 GATCATCATA
51954289 GTATATGA-GTTGATTAATC-TATTCTTAAC
1 GTATAT-ACGTTGATTAATCTTATTCTTAAC
51954318 GTATATACGTTGATTAATCTTATTCTTA
1 GTATATACGTTGATTAATCTTATTCTTA
51954346 TTCTTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 1 0.04
29 17 0.65
30 8 0.31
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (30 bp):
GTATATACGTTGATTAATCTTATTCTTAAC
Found at i:51961580 original size:278 final size:280
Alignment explanation
Indices: 51961057--51961612 Score: 902
Period size: 278 Copynumber: 2.0 Consensus size: 280
51961047 GTTCTAAGAT
* **
51961057 CTATTGGTCAATTGGGCGTTAAAACATTGAAATTTAGACATGTGAATTAAGTGGGTTGGTTTTGA
1 CTATTGGCCAATTGGGCGTTAAAACATTGAAAACTAGACATGTGAATTAAGTGGGTTGGTTTTGA
* * *
51961122 TTTTGATCGATTTAAGTTATAAAAATTTCTGGTAATTACGGTTTTTGGGCTTAGGTTTGAGTTTG
66 TTTTGATCGATTTAAGTTATAAAAATTTCTGATAATTACGGTTTTGGGGATTAGGTTTGA---TG
*
51961187 AGGGTTGGATTTTTCATGTTAAATCTTTATAGATTACAATCATTCCGGGTTACTTATTTAGATAA
128 A-GGTTGGATTTTTCATGTTAAATCTTTATAGATTACAATCATTCCGGATTACTTATTTAGATAA
51961252 TATTAGATTTAAATTATTTTAGATTTGAATTGCTTTAGGATTGGATTTAATTAGATAAATTCGTG
192 TATTAGATTTAAATTATTTTAGATTTGAATTGCTTTAGGATTGGATTTAATTAGATAAATTCGTG
*
51961317 CAATTTTTTTTCTTATGTCGTGCA
257 CAATTTTTATTCTTATGTCGTGCA
51961341 CTATTGGCCAATTGGGCGTTAAAACATTGAAAACTAGACATGTGAATTAAGTGGGTTGGTTTTGA
1 CTATTGGCCAATTGGGCGTTAAAACATTGAAAACTAGACATGTGAATTAAGTGGGTTGGTTTTGA
*
51961406 TTTTGATCGATTTAAGTTAT-AAAATTTTTAGATAATTACGGTTTTGGGGATTAGGTTTGA-GA-
66 TTTTGATCGATTTAAGTTATAAAAATTTCT-GATAATTACGGTTTTGGGGATTAGGTTTGATGAG
* * * *
51961468 GTTGGATTTTTCATGTTAGATCTTTATAGATTACAATCATTTCGGATTACTTGTTTAGATAATTT
130 GTTGGATTTTTCATGTTAAATCTTTATAGATTACAATCATTCCGGATTACTTATTTAGATAATAT
* * *
51961533 TGGATTTAAATTATTTTAGATTTGAATTGCTTTAGGATTGGATTTAATTAGATAAATTTGTGCAC
195 TAGATTTAAATTATTTTAGATTTGAATTGCTTTAGGATTGGATTTAATTAGATAAATTCGTGCAA
51961598 TTTTTATTCTTATGT
260 TTTTTATTCTTATGT
51961613 TGGGTTCGGG
Statistics
Matches: 255, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
278 136 0.53
280 2 0.01
283 8 0.03
284 109 0.43
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (280 bp):
CTATTGGCCAATTGGGCGTTAAAACATTGAAAACTAGACATGTGAATTAAGTGGGTTGGTTTTGA
TTTTGATCGATTTAAGTTATAAAAATTTCTGATAATTACGGTTTTGGGGATTAGGTTTGATGAGG
TTGGATTTTTCATGTTAAATCTTTATAGATTACAATCATTCCGGATTACTTATTTAGATAATATT
AGATTTAAATTATTTTAGATTTGAATTGCTTTAGGATTGGATTTAATTAGATAAATTCGTGCAAT
TTTTATTCTTATGTCGTGCA
Found at i:51972969 original size:80 final size:77
Alignment explanation
Indices: 51972827--51973055 Score: 195
Period size: 80 Copynumber: 3.0 Consensus size: 77
51972817 TGAAAATTTG
* * * *
51972827 ATTTGCTCAATCTTTTTAA-AAGGAGTGATTAAATTAACCATAAAA-AGAAAGAATAATTCTATT
1 ATTTACTCAATC-TTTTAATAA-CAGTGATTAAATTAA-C-TAAAACA-AAAGAATGATCCTATT
51972890 TAGAGTAAGTAACGGCA
61 TAGAGTAAGTAACGGCA
* * *
51972907 GTTTACTCAATGGTTTTAATAACAGTGATTAAATTAACTAAAACATATAAGAATGATCCTATTAA
1 ATTTACTCAAT-CTTTTAATAACAGTGATTAAATTAACTAAAACA-A-AAGAATGATCCTATTTA
* * * **
51972972 AAATAAATAACGATA
63 GAGTAAGTAACGGCA
* * *
51972987 ATTTATTTAATCTTTTAATAACAGTGATTAAATTAA-T----CAAAA-AATGATCTTATTTAGAG
1 ATTTACTCAATCTTTTAATAACAGTGATTAAATTAACTAAAACAAAAGAATGATCCTATTTAGAG
51973046 TAAGTAACGG
66 TAAGTAACGG
51973056 ACAAAAAGAT
Statistics
Matches: 122, Mismatches: 23, Indels: 17
0.75 0.14 0.10
Matches are distributed among these distances:
71 21 0.17
72 2 0.02
73 1 0.01
74 2 0.02
78 6 0.05
79 27 0.22
80 61 0.50
81 2 0.02
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (77 bp):
ATTTACTCAATCTTTTAATAACAGTGATTAAATTAACTAAAACAAAAGAATGATCCTATTTAGAG
TAAGTAACGGCA
Found at i:51981562 original size:26 final size:26
Alignment explanation
Indices: 51981509--51981562 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
51981499 TCACGTTGTT
* *
51981509 TTTTTTTAAAATTAATATTTAAATTA
1 TTTTTTTAAAATTAATATATAAACTA
* *
51981535 TTTTTTTACAATTAATATATAGACTA
1 TTTTTTTAAAATTAATATATAAACTA
51981561 TT
1 TT
51981563 AAACTAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (26 bp):
TTTTTTTAAAATTAATATATAAACTA
Found at i:51991642 original size:32 final size:32
Alignment explanation
Indices: 51991601--51991665 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
51991591 AGTAGATTCA
51991601 TATTAGACATATCTATGTTACTCAGACTTGGG
1 TATTAGACATATCTATGTTACTCAGACTTGGG
51991633 TATTAGACATATCTATGTTACTCAGACTTGGG
1 TATTAGACATATCTATGTTACTCAGACTTGGG
51991665 T
1 T
51991666 GTTATTGTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (32 bp):
TATTAGACATATCTATGTTACTCAGACTTGGG
Found at i:51994753 original size:21 final size:21
Alignment explanation
Indices: 51994729--51994768 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
51994719 TATTATTAAT
51994729 ATTTT-AATATATAAAATATAA
1 ATTTTAAATAT-TAAAATATAA
51994750 ATTTTAAATATTAAAATAT
1 ATTTTAAATATTAAAATAT
51994769 GATGAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTTTAAATATTAAAATATAA
Found at i:51995780 original size:92 final size:90
Alignment explanation
Indices: 51995613--51995795 Score: 215
Period size: 92 Copynumber: 2.0 Consensus size: 90
51995603 GCCTTAAACC
* * * ** *
51995613 TGTGGATTTTGAACCCGAAAATGCACTCTTCCAAGGCCAGCCAGGCTAAAAACAATTTAGTGTCC
1 TGTGGATCTTGAACCCGAAAATGCACTCTTCAAAGGCCAGCCAGCCTAAAAACAACCTA-TGTCA
* * *
51995678 CAGGCCAAGACTTGAGCTCTATGCCTG
65 AAGGCCAAGACTAGA-CTCTAAGCCTG
*
51995705 TGTGGATCTTGAACCCGAAAATGCACTCTTCAAAGTCCAGCCAGCCTAAAAACAACCT-TGTCAA
1 TGTGGATCTTGAACCCGAAAATGCACTCTTCAAAGGCCAGCCAGCCTAAAAACAACCTATGTCAA
**
51995769 AGCGGTGAAGACTAGACTCTAAGCCTG
66 A--GGCCAAGACTAGACTCTAAGCCTG
51995796 CACGAATCTT
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
90 5 0.06
91 10 0.13
92 62 0.81
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (90 bp):
TGTGGATCTTGAACCCGAAAATGCACTCTTCAAAGGCCAGCCAGCCTAAAAACAACCTATGTCAA
AGGCCAAGACTAGACTCTAAGCCTG
Found at i:51996769 original size:11 final size:11
Alignment explanation
Indices: 51996753--51996794 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
51996743 AAAGGAAAAT
51996753 AATTAAATAAA
1 AATTAAATAAA
*
51996764 AATTAATATTAA
1 AATTAA-ATAAA
*
51996776 TATTAAATAAA
1 AATTAAATAAA
51996787 AATTAAAT
1 AATTAAAT
51996795 TGAAAACAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATTAAATAAA
Found at i:52003953 original size:16 final size:16
Alignment explanation
Indices: 52003930--52003969 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
52003920 CGTTTGGTTC
52003930 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
52003946 GGTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
52003962 GCTGTAAT
1 GCTGTAAT
52003970 CAGTAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.33, T:0.28
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:52004094 original size:16 final size:16
Alignment explanation
Indices: 52004055--52004094 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
52004045 CGTTTGGTTC
*
52004055 GCTGTAATGGAATTGA
1 GCTGTAATGGAATAGA
* *
52004071 GGTATAATGGAATAGA
1 GCTGTAATGGAATAGA
52004087 GCTGTAAT
1 GCTGTAAT
52004095 CAGTAATTTA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:52004109 original size:125 final size:125
Alignment explanation
Indices: 52003887--52004135 Score: 480
Period size: 125 Copynumber: 2.0 Consensus size: 125
52003877 CCTCCCCTCC
*
52003887 CCTCCCCTCCCTTTTCCTCTCCCACTTCCAGTACGTTTGGTTCGCTGTAATGGAATAGAGGTGTA
1 CCTCCCCTCCCTTTTCCTCTCCCACTTCCAGTACGTTTGGTTCGCTGTAATGGAATAGAGGTATA
52003952 ATGGAATAGAGCTGTAATCAGTAATTTAATTGTTTGGTTGATTGGAATGGAATAGAACTT
66 ATGGAATAGAGCTGTAATCAGTAATTTAATTGTTTGGTTGATTGGAATGGAATAGAACTT
*
52004012 CCTCCCCTCCCTTTTCCTCTCCCACTTCCAGTACGTTTGGTTCGCTGTAATGGAATTGAGGTATA
1 CCTCCCCTCCCTTTTCCTCTCCCACTTCCAGTACGTTTGGTTCGCTGTAATGGAATAGAGGTATA
52004077 ATGGAATAGAGCTGTAATCAGTAATTTAATTGTTTGGTTGATTGGAATGGAATAGAACT
66 ATGGAATAGAGCTGTAATCAGTAATTTAATTGTTTGGTTGATTGGAATGGAATAGAACT
52004136 GTAATAATAT
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 122 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (125 bp):
CCTCCCCTCCCTTTTCCTCTCCCACTTCCAGTACGTTTGGTTCGCTGTAATGGAATAGAGGTATA
ATGGAATAGAGCTGTAATCAGTAATTTAATTGTTTGGTTGATTGGAATGGAATAGAACTT
Found at i:52004295 original size:26 final size:26
Alignment explanation
Indices: 52004264--52004348 Score: 73
Period size: 32 Copynumber: 3.0 Consensus size: 26
52004254 AATTTTAATG
52004264 ATTATTATTACATATAATTTAATAAAA
1 ATTATTATTA-ATATAATTTAATAAAA
* *
52004291 A-TATTAATTAATTTAATTATATTTTAACATA
1 ATTATT-ATTAATATAATT-TA--ATAA-A-A
52004322 ATTATTATTAAATATAATTTAATAAAA
1 ATTATTATT-AATATAATTTAATAAAA
52004349 TAATATATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
26 11 0.24
27 8 0.17
28 1 0.02
29 6 0.13
30 1 0.02
31 7 0.15
32 12 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
ATTATTATTAATATAATTTAATAAAA
Found at i:52004337 original size:58 final size:59
Alignment explanation
Indices: 52004264--52004424 Score: 195
Period size: 58 Copynumber: 2.7 Consensus size: 59
52004254 AATTTTAATG
* * *
52004264 ATTATTATTACATATAATTTAATAAAAATATTA-ATTAATTTAATTATA-TTTTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATAATATA-TAATTTAATAATATTTTTAACATA
*
52004322 ATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATAATATTTTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAATATTTTTAACATA
*
52004380 ATTATTATTAAAATATGAATTAGTAA-AAATTATAATATATAATTT
1 ATTATTATT-AAATAT-AATT--TAATAAA-AATAATATATAATTT
52004425 TAGAAAAATA
Statistics
Matches: 90, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
57 20 0.22
58 41 0.46
59 6 0.07
60 4 0.04
62 5 0.06
63 14 0.16
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (59 bp):
ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAATATTTTTAACATA
Found at i:52010780 original size:6 final size:6
Alignment explanation
Indices: 52010747--52010789 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
52010737 ATGCCCTTCA
* *
52010747 TTTCTT CTTCTT TTT-TT TTTCTTT TTTCTT TTTCTA TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTC-TT TTTCTT TTTCTT TTTCTT T
52010790 CTCTCAAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
5 5 0.16
6 20 0.65
7 6 0.19
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTCTT
Found at i:52011729 original size:26 final size:29
Alignment explanation
Indices: 52011670--52011729 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 29
52011660 TATTATATTA
**
52011670 TAAATAAATTATATATATATTTATTAAAC
1 TAAATAAATTATATATATATTTACAAAAC
*
52011699 TAAATAAA-TATATATA-ATTTCCAAAAC
1 TAAATAAATTATATATATATTTACAAAAC
52011726 -AAAT
1 TAAAT
52011730 TCAATCTCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 4 0.14
27 8 0.29
28 8 0.29
29 8 0.29
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (29 bp):
TAAATAAATTATATATATATTTACAAAAC
Found at i:52020711 original size:34 final size:35
Alignment explanation
Indices: 52020657--52020723 Score: 127
Period size: 34 Copynumber: 1.9 Consensus size: 35
52020647 AAACAATTTT
52020657 ACAATATTTTTTAGGAAAAAAATTCAAGAACATTG
1 ACAATATTTTTTAGGAAAAAAATTCAAGAACATTG
52020692 ACAATATTTTTTAGG-AAAAAATTCAAGAACAT
1 ACAATATTTTTTAGGAAAAAAATTCAAGAACAT
52020724 GTTAACTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 17 0.53
35 15 0.47
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.31
Consensus pattern (35 bp):
ACAATATTTTTTAGGAAAAAAATTCAAGAACATTG
Found at i:52028322 original size:30 final size:29
Alignment explanation
Indices: 52028287--52028481 Score: 169
Period size: 30 Copynumber: 6.6 Consensus size: 29
52028277 GGTCAAAACA
* *
52028287 TAATTTTAGACAAGTTAAAGGGTAAAAATG
1 TAATTTTAGAAAAGTTAGAGGGT-AAAATG
** * *
52028317 TAATTTGGGAAAAGTTTGGGGGTCAAAATG
1 TAATTTTAGAAAAGTTAGAGGGT-AAAATG
* * * *
52028347 TAATTTTGGAAAATTTTAGAGGCTAAAATA
1 TAATTTTAGAAAA-GTTAGAGGGTAAAATG
*
52028377 AAATTTTAGAAAAGTTAGAGGGTCAAAATG
1 TAATTTTAGAAAAGTTAGAGGGT-AAAATG
* * *
52028407 TAATTTTAGATAAGTTTGAGGCTAAAATG
1 TAATTTTAGAAAAGTTAGAGGGTAAAATG
* *
52028436 AAATTTTGGAAAAGATTAG-GGGTTAAAATG
1 TAATTTTAGAAAAG-TTAGAGGG-TAAAATG
52028466 TAATTTCTA-AAAAGTT
1 TAATTT-TAGAAAAGTT
52028482 TGACGGTCAA
Statistics
Matches: 131, Mismatches: 29, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
29 29 0.22
30 95 0.73
31 7 0.05
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (29 bp):
TAATTTTAGAAAAGTTAGAGGGTAAAATG
Found at i:52028464 original size:59 final size:58
Alignment explanation
Indices: 52028275--52028484 Score: 224
Period size: 60 Copynumber: 3.5 Consensus size: 58
52028265 CGGAGGATAC
** * ** * * * *
52028275 GGGGTCAAAACATAATTTTAGACAAGTTAAAGGGTAAAAATGTAATTTGGGAAAAGTTTG
1 GGGGTCAAAATGTAATTTTAGAAAAGTTTGAGGCT-AAAATGAAATTTTGGAAAAG-TTA
* * * *
52028335 GGGGTCAAAATGTAATTTTGGAAAATTTTAGAGGCTAAAATAAAATTTTAGAAAAGTTA
1 GGGGTCAAAATGTAATTTTAGAAAAGTTT-GAGGCTAAAATGAAATTTTGGAAAAGTTA
*
52028394 GAGGGTCAAAATGTAATTTTAGATAAGTTTGAGGCTAAAATGAAATTTTGGAAAAGATTA
1 G-GGGTCAAAATGTAATTTTAGAAAAGTTTGAGGCTAAAATGAAATTTTGGAAAAG-TTA
*
52028454 GGGGTTAAAATGTAATTTCTA-AAAAGTTTGA
1 GGGGTCAAAATGTAATTT-TAGAAAAGTTTGA
52028485 CGGTCAAAAT
Statistics
Matches: 126, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
59 52 0.41
60 70 0.56
61 4 0.03
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.31
Consensus pattern (58 bp):
GGGGTCAAAATGTAATTTTAGAAAAGTTTGAGGCTAAAATGAAATTTTGGAAAAGTTA
Found at i:52028494 original size:30 final size:29
Alignment explanation
Indices: 52028276--52028494 Score: 138
Period size: 30 Copynumber: 7.3 Consensus size: 29
52028266 GGAGGATACG
** * **
52028276 GGGTCAAAACATAATTTTAGACAAGTTAAA
1 GGGTCAAAATGTAATTTTA-AAAAGTTTGA
* ** *
52028306 GGGTAAAAATGTAATTTGGGAAAAGTTTGG
1 GGGTCAAAATGTAATTT-TAAAAAGTTTGA
* *
52028336 GGGTCAAAATGTAATTTTGGAAAATTTTAGA
1 GGGTCAAAATGTAATTTT-AAAAAGTTT-GA
* ** *
52028367 GGCT-AAAATAAAATTTTAGAAAAGTTAGA
1 GGGTCAAAATGTAATTTTA-AAAAGTTTGA
*
52028396 GGGTCAAAATGTAATTTTAGATAAGTTTGA
1 GGGTCAAAATGTAATTTTA-AAAAGTTTGA
* * * *
52028426 GGCT-AAAATGAAATTTTGGAAAAGATT-A
1 GGGTCAAAATGTAATTTT-AAAAAGTTTGA
*
52028454 GGGGTTAAAATGTAATTTCTAAAAAGTTTGA
1 -GGGTCAAAATGTAATTT-TAAAAAGTTTGA
*
52028485 CGGTCAAAAT
1 GGGTCAAAAT
52028495 ATGATTTTCA
Statistics
Matches: 144, Mismatches: 35, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
28 1 0.01
29 26 0.18
30 111 0.77
31 6 0.04
ACGTcount: A:0.42, C:0.05, G:0.22, T:0.31
Consensus pattern (29 bp):
GGGTCAAAATGTAATTTTAAAAAGTTTGA
Found at i:52030499 original size:33 final size:33
Alignment explanation
Indices: 52030457--52030530 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
52030447 TGCAGGTGGT
*
52030457 GATTATTTCGAAGATGCTTATGAAGATTTTGAA
1 GATTATTTCGAAGATGCTTATGAAGATTTTCAA
* *
52030490 GATTATTTCGAAGTTGCTTATGCAGATTTTCAA
1 GATTATTTCGAAGATGCTTATGAAGATTTTCAA
*
52030523 TATTATTT
1 GATTATTT
52030531 TAGAAAGCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.45
Consensus pattern (33 bp):
GATTATTTCGAAGATGCTTATGAAGATTTTCAA
Found at i:52031422 original size:22 final size:22
Alignment explanation
Indices: 52031371--52031451 Score: 90
Period size: 23 Copynumber: 3.6 Consensus size: 22
52031361 AAGTACTTAA
*
52031371 CAGTAAGCACACACAGTGCAAT
1 CAGTAGGCACACACAGTGCAAT
*
52031393 CCAGTAGGCACACGCAGTGCAAT
1 -CAGTAGGCACACACAGTGCAAT
* * **
52031416 CAGTAGGCGCACATAACGCAAAT
1 CAGTAGGCACACACAGTGC-AAT
52031439 CAGTAGGCACACA
1 CAGTAGGCACACA
52031452 AGGTGCGAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 14 0.29
23 35 0.71
ACGTcount: A:0.37, C:0.28, G:0.22, T:0.12
Consensus pattern (22 bp):
CAGTAGGCACACACAGTGCAAT
Found at i:52031465 original size:23 final size:23
Alignment explanation
Indices: 52031369--52031492 Score: 76
Period size: 23 Copynumber: 5.4 Consensus size: 23
52031359 CGAAGTACTT
*
52031369 AACAGTAAGCACACACAGTGC-A
1 AACAGTAAGCACACAAAGTGCGA
* * **
52031391 ATCCAGTAGGCACACGCAGTGC-A
1 A-ACAGTAAGCACACAAAGTGCGA
* * * *
52031414 ATCAGTAGGCGCACATAA-CGC-A
1 AACAGTAAGCACACA-AAGTGCGA
* *
52031436 AATCAGTAGGCACACAAGGTGCGA
1 AA-CAGTAAGCACACAAAGTGCGA
*
52031460 AACAGTAAGCATACAAAGTGCGA
1 AACAGTAAGCACACAAAGTGCGA
*
52031483 AATAGTAAGC
1 AACAGTAAGC
52031493 GCGCTAACGT
Statistics
Matches: 81, Mismatches: 16, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
22 17 0.21
23 61 0.75
24 3 0.04
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.13
Consensus pattern (23 bp):
AACAGTAAGCACACAAAGTGCGA
Found at i:52033325 original size:7 final size:7
Alignment explanation
Indices: 52033315--52033344 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
52033305 AGTTTTCGAA
52033315 AAATTTG
1 AAATTTG
52033322 AAATTTG
1 AAATTTG
*
52033329 AAAGTTG
1 AAATTTG
52033336 AAATTTG
1 AAATTTG
52033343 AA
1 AA
52033345 TTGAGAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (7 bp):
AAATTTG
Found at i:52033391 original size:11 final size:11
Alignment explanation
Indices: 52033375--52033401 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
52033365 AACAATATAG
52033375 GATTTTGTTAT
1 GATTTTGTTAT
52033386 GATTTTGTTAT
1 GATTTTGTTAT
52033397 GATTT
1 GATTT
52033402 ATATTCGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.63
Consensus pattern (11 bp):
GATTTTGTTAT
Found at i:52035423 original size:42 final size:39
Alignment explanation
Indices: 52035377--52035454 Score: 93
Period size: 39 Copynumber: 1.9 Consensus size: 39
52035367 TCATAAAATA
* * *
52035377 ATATTTGATTTTATATTATTTTTTAATAAATTTGTTAAAACC
1 ATATTT-AATTTATATT-TTGTTT-ATAAATTTATTAAAACC
*
52035419 ATATTTAATTTGTATTTTGTTTATAAATTTATTAAA
1 ATATTTAATTTATATTTTGTTTATAAATTTATTAAA
52035455 CAAATTTGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 13 0.41
40 5 0.16
41 8 0.25
42 6 0.19
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (39 bp):
ATATTTAATTTATATTTTGTTTATAAATTTATTAAAACC
Found at i:52039595 original size:30 final size:31
Alignment explanation
Indices: 52039530--52039597 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
52039520 ATCTAAAATG
* * **
52039530 CAATTATATATATATATATATTGATTTTGTA
1 CAATTTTATATATATAAATATTGATTTAATA
*
52039561 CAATTTTATATATA-AAATATTGATTTAATC
1 CAATTTTATATATATAAATATTGATTTAATA
52039591 CAATTTT
1 CAATTTT
52039598 TAAATTATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 19 0.59
31 13 0.41
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (31 bp):
CAATTTTATATATATAAATATTGATTTAATA
Found at i:52042123 original size:16 final size:18
Alignment explanation
Indices: 52042101--52042142 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 18
52042091 AATAGTTTAA
52042101 ATAAAAATATAAATTT-T
1 ATAAAAATATAAATTTGT
52042118 -TAAAAA-ATAAATTTGT
1 ATAAAAATATAAATTTGT
52042134 ATAAAAATA
1 ATAAAAATA
52042143 ATATTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 8 0.36
16 7 0.32
17 6 0.27
18 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
ATAAAAATATAAATTTGT
Found at i:52042143 original size:16 final size:15
Alignment explanation
Indices: 52042102--52042148 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
52042092 ATAGTTTAAA
*
52042102 TAAAAATATAAATTTT
1 TAAAAA-ATAAATTTG
52042118 TAAAAAATAAATTTG
1 TAAAAAATAAATTTG
52042133 TATAAAAATAATATTT
1 TA-AAAAATAA-ATTT
52042149 ATTTTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 10 0.36
16 14 0.50
17 4 0.14
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
TAAAAAATAAATTTG
Found at i:52042307 original size:14 final size:14
Alignment explanation
Indices: 52042284--52042317 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
52042274 TGTCATTTCG
*
52042284 TTATTATATTATTA
1 TTATTTTATTATTA
*
52042298 TTATTTTATTGTTA
1 TTATTTTATTATTA
52042312 TTATTT
1 TTATTT
52042318 AGATATTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (14 bp):
TTATTTTATTATTA
Found at i:52043442 original size:20 final size:22
Alignment explanation
Indices: 52043417--52043465 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 22
52043407 ATTTAAAAGA
52043417 TAATATTTTATA-ATTTAT-AT
1 TAATATTTTATATATTTATAAT
52043437 TAATATTTTATATATTTATAAT
1 TAATATTTTATATATTTATAAT
52043459 TAA-ATTT
1 TAATATTT
52043466 AAATGAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 12 0.44
21 10 0.37
22 5 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TAATATTTTATATATTTATAAT
Found at i:52043648 original size:4 final size:4
Alignment explanation
Indices: 52043641--52043680 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
52043631 TATATATATA
52043641 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
52043681 ATTATTTTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:52044256 original size:30 final size:31
Alignment explanation
Indices: 52044216--52044274 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
52044206 GATCTCGATG
52044216 ACAAAACAAT-C-ACTCAACTTTCAAAAAATA
1 ACAAAACAATCCTACT-AACTTTCAAAAAATA
*
52044246 ACAAATCAATCCTACTAACTTTCAAAAAA
1 ACAAAACAATCCTACTAACTTTCAAAAAA
52044275 CCAGACACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 9 0.35
31 14 0.54
32 3 0.12
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (31 bp):
ACAAAACAATCCTACTAACTTTCAAAAAATA
Found at i:52045178 original size:29 final size:29
Alignment explanation
Indices: 52045121--52045178 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
52045111 AAGTATAAAC
*
52045121 ATATTGGGCCATTTACGTAAAAAGTAAAA
1 ATATTGGGCCATTTACGTAAAAAGAAAAA
* *
52045150 ATATTGGGTCATTTA-TTAAAAACGAAAAA
1 ATATTGGGCCATTTACGTAAAAA-GAAAAA
52045179 GGAAAGACGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.29
Consensus pattern (29 bp):
ATATTGGGCCATTTACGTAAAAAGAAAAA
Found at i:52045761 original size:36 final size:36
Alignment explanation
Indices: 52045721--52045817 Score: 98
Period size: 32 Copynumber: 2.8 Consensus size: 36
52045711 TGTTAAATGA
52045721 AATAAAATAAAATATGTTTGATATTTTATTGAATTT
1 AATAAAATAAAATATGTTTGATATTTTATTGAATTT
** **
52045757 AATAAAATACGAT-T-AAT-AT-TTTTATTGAATTT
1 AATAAAATAAAATATGTTTGATATTTTATTGAATTT
*
52045789 AAGT--TATAAAATATGTTTGATATTTTATT
1 AA-TAAAATAAAATATGTTTGATATTTTATT
52045818 TAAAATTAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 11
0.70 0.13 0.16
Matches are distributed among these distances:
31 5 0.11
32 16 0.34
33 4 0.09
34 3 0.06
35 8 0.17
36 11 0.23
ACGTcount: A:0.42, C:0.01, G:0.08, T:0.48
Consensus pattern (36 bp):
AATAAAATAAAATATGTTTGATATTTTATTGAATTT
Found at i:52045764 original size:31 final size:32
Alignment explanation
Indices: 52045725--52045817 Score: 116
Period size: 31 Copynumber: 2.8 Consensus size: 32
52045715 AAATGAAATA
52045725 AAATAAAATATGTTTGATATTTTATTGAATTT
1 AAATAAAATATGTTTGATATTTTATTGAATTT
* * *
52045757 -AATAAAATACGATTAATATTTTTATTGAATTT
1 AAATAAAATATGTTTGATA-TTTTATTGAATTT
52045789 AAGTTATAAAATATGTTTGATATTTTATT
1 AA---ATAAAATATGTTTGATATTTTATT
52045818 TAAAATTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
31 15 0.30
32 13 0.26
33 1 0.02
35 7 0.14
36 14 0.28
ACGTcount: A:0.41, C:0.01, G:0.09, T:0.49
Consensus pattern (32 bp):
AAATAAAATATGTTTGATATTTTATTGAATTT
Found at i:52046531 original size:14 final size:15
Alignment explanation
Indices: 52046497--52046537 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
52046487 TGTAATAAAC
*
52046497 TATTCAATAAAACAT
1 TATTCAATAAAAAAT
*
52046512 TTTTCAA-AAAAAAT
1 TATTCAATAAAAAAT
52046526 TATTCAATAAAA
1 TATTCAATAAAA
52046538 TATCATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
TATTCAATAAAAAAT
Found at i:52046746 original size:26 final size:30
Alignment explanation
Indices: 52046690--52046753 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 30
52046680 TGATTAAAAT
52046690 ATAAATTTATTAATAATTTAATAATATTAA
1 ATAAATTTATTAATAATTTAATAATATTAA
* *
52046720 ATAAATTT-TTAAT-TTTTAA-AATATAAA
1 ATAAATTTATTAATAATTTAATAATATTAA
52046747 ATTAAAT
1 A-TAAAT
52046754 ATTAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 8 0.26
28 10 0.32
29 5 0.16
30 8 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
ATAAATTTATTAATAATTTAATAATATTAA
Found at i:52046758 original size:27 final size:29
Alignment explanation
Indices: 52046690--52046758 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 29
52046680 TGATTAAAAT
*
52046690 ATAAATTTATTAATAATTTAATAATATTAA
1 ATAAA-TTATTAATAATTTAATAATATAAA
* *
52046720 ATAAATTTTTAAT-TTTTAA-AATATAAA
1 ATAAATTATTAATAATTTAATAATATAAA
52046747 ATTAAA-TATTAA
1 A-TAAATTATTAA
52046759 ATATTATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
27 13 0.38
28 9 0.26
29 7 0.21
30 5 0.15
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
ATAAATTATTAATAATTTAATAATATAAA
Found at i:52048337 original size:2 final size:2
Alignment explanation
Indices: 52048330--52048372 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
52048320 TTTTAGCATT
*
52048330 TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52048372 T
1 T
52048373 GTGTGTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:52049747 original size:24 final size:25
Alignment explanation
Indices: 52049718--52049767 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
52049708 GTTAATAAAA
52049718 ATTTGGATT-TCTAAATTC-TTAACT
1 ATTTGGATTGT-TAAATTCTTTAACT
*
52049742 ATTTGGATTGTTAATTTCTTTAACT
1 ATTTGGATTGTTAAATTCTTTAACT
52049767 A
1 A
52049768 AAATTGCGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52
Consensus pattern (25 bp):
ATTTGGATTGTTAAATTCTTTAACT
Found at i:52049947 original size:18 final size:18
Alignment explanation
Indices: 52049924--52050009 Score: 75
Period size: 18 Copynumber: 4.8 Consensus size: 18
52049914 GGTTGGAGGT
52049924 GATTTGAGTAAGCTTGGC
1 GATTTGAGTAAGCTTGGC
** *
52049942 GATTTGAGTAAGCGCGGA
1 GATTTGAGTAAGCTTGGC
* * *
52049960 GATTTGTGCATGCTTGGC
1 GATTTGAGTAAGCTTGGC
* * *
52049978 GATTTCAGTACGCTTGGAG
1 GATTTGAGTAAGCTTGG-C
52049997 GA-TTGAGTAAGCT
1 GATTTGAGTAAGCT
52050010 CGGTGATCTC
Statistics
Matches: 51, Mismatches: 16, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
18 49 0.96
19 2 0.04
ACGTcount: A:0.22, C:0.13, G:0.34, T:0.31
Consensus pattern (18 bp):
GATTTGAGTAAGCTTGGC
Found at i:52054525 original size:17 final size:18
Alignment explanation
Indices: 52054503--52054537 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
52054493 TCCATAATTA
52054503 TATTTTTACATT-ATTTT
1 TATTTTTACATTCATTTT
*
52054520 TATTTTTATATTCATTTT
1 TATTTTTACATTCATTTT
52054538 ATTCCTCACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTTTACATTCATTTT
Found at i:52055357 original size:22 final size:21
Alignment explanation
Indices: 52055322--52055363 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
52055312 AACAATTTTC
52055322 AAAAATAAAAATATATTATTAT
1 AAAAATAAAAATAT-TTATTAT
**
52055344 AAAAATAATTATATTTATTA
1 AAAAATAAAAATATTTATTA
52055364 CTTAATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATAAAAATATTTATTAT
Found at i:52055358 original size:17 final size:16
Alignment explanation
Indices: 52055326--52055355 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
52055316 ATTTTCAAAA
52055326 ATAAAAATATATTATT
1 ATAAAAATATATTATT
52055342 ATAAAAATA-ATTAT
1 ATAAAAATATATTAT
52055356 ATTTATTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAAAAATATATTATT
Found at i:52055877 original size:16 final size:16
Alignment explanation
Indices: 52055842--52055879 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
52055832 TCAAAATTAA
52055842 AATTTTTACAACATTC
1 AATTTTTACAACATTC
*
52055858 -ATTTTTACAATATTC
1 AATTTTTACAACATTC
52055873 AATTTTT
1 AATTTTT
52055880 TAATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTTTACAACATTC
Found at i:52057406 original size:114 final size:113
Alignment explanation
Indices: 52057241--52057669 Score: 468
Period size: 114 Copynumber: 3.9 Consensus size: 113
52057231 GAGCAGCTGG
* * *
52057241 GGGAGGGTCTCCTCAGGTTCAGCATTCTGGACTATTGGGCACTGCCTCTGGATTCATCAAGCAGA
1 GGGAGGGTCTCCTCAGGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAGG
* * *
52057306 TCTCTTCCGATGCCATCTCGGCTGCCCAATTGTCCCCAGGAGTGTTCAA
66 TCTCATCCGATGCCATCTCGGCTGCCCAAATGTCCCCAGGAG-GGTCAA
* * * *
52057355 GGGAGGGTCTCCTCAGGCTCAGCCTTCTGGACTGTTGGGTACTGCATCTGGATTCATCAATCAGG
1 GGGAGGGTCTCCTCAGGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAGG
* * **
52057420 TCTCATCCGATGCCATCTCGGTTGCCCAAATGTCTCCAGGAGGGTCTG
66 TCTCATCCGATGCCATCTCGGCTGCCCAAATGTCCCCAGGAGGGTCAA
* * * *
52057468 GGGAATGGTCTCCTCAGGCTCAGAATTCTGGACTGTTGGGCACTACCTCTGGGTTCATCAAGCAG
1 GGG-AGGGTCTCCTCAGGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
* * *
52057533 GTCTCATCTGATGCCATCTCGACTGCCCAAA-GCTCTCCAGGA----C--
65 GTCTCATCCGATGCCATCTCGGCTGCCCAAATG-TCCCCAGGAGGGTCAA
* * * * ** *
52057576 ----TGG-CTACTCAGGCCCAGCATTCTGGACTGTTCGGTGCTGCCTCTGGATTGATCAAGCAGG
1 GGGAGGGTCTCCTCAGGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAGG
* *
52057636 TCTCATCTGATGCCATCTCAGCTGCCCATAATGT
66 TCTCATCCGATGCCATCTCGGCTGCCCA-AATGT
52057670 GGCTACTGAT
Statistics
Matches: 275, Mismatches: 36, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
102 74 0.27
103 6 0.02
104 1 0.00
110 1 0.00
113 7 0.03
114 186 0.68
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.27
Consensus pattern (113 bp):
GGGAGGGTCTCCTCAGGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAGG
TCTCATCCGATGCCATCTCGGCTGCCCAAATGTCCCCAGGAGGGTCAA
Found at i:52057661 original size:102 final size:102
Alignment explanation
Indices: 52057480--52057663 Score: 280
Period size: 102 Copynumber: 1.8 Consensus size: 102
52057470 GAATGGTCTC
* * *
52057480 CTCAGGCTCAGAATTCTGGACTGTTGGGCACTACCTCTGGGTTCATCAAGCAGGTCTCATCTGAT
1 CTCAGGCCCAGAATTCTGGACTGTTCGGCACTACCTCTGGATTCATCAAGCAGGTCTCATCTGAT
52057545 GCCATCTCGACTGCCCAAAGCTCTCCAGGACTGGCTA
66 GCCATCTCGACTGCCCAAAGCTCTCCAGGACTGGCTA
* ** * *
52057582 CTCAGGCCCAGCATTCTGGACTGTTCGGTGCTGCCTCTGGATTGATCAAGCAGGTCTCATCTGAT
1 CTCAGGCCCAGAATTCTGGACTGTTCGGCACTACCTCTGGATTCATCAAGCAGGTCTCATCTGAT
52057647 GCCATCTC-AGCTGCCCA
66 GCCATCTCGA-CTGCCCA
52057664 TAATGTGGCT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 1 0.01
102 72 0.99
ACGTcount: A:0.19, C:0.31, G:0.24, T:0.26
Consensus pattern (102 bp):
CTCAGGCCCAGAATTCTGGACTGTTCGGCACTACCTCTGGATTCATCAAGCAGGTCTCATCTGAT
GCCATCTCGACTGCCCAAAGCTCTCCAGGACTGGCTA
Found at i:52060639 original size:24 final size:25
Alignment explanation
Indices: 52060610--52060659 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
52060600 GTTAATAAAA
52060610 ATTTGGATT-TCTAAATTC-TTAACT
1 ATTTGGATTGT-TAAATTCTTTAACT
*
52060634 ATTTGGATTGTTAATTTCTTTAACT
1 ATTTGGATTGTTAAATTCTTTAACT
52060659 A
1 A
52060660 AAATTGCGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52
Consensus pattern (25 bp):
ATTTGGATTGTTAAATTCTTTAACT
Found at i:52060839 original size:18 final size:18
Alignment explanation
Indices: 52060816--52060901 Score: 75
Period size: 18 Copynumber: 4.8 Consensus size: 18
52060806 GGTTGGAGGT
52060816 GATTTGAGTAAGCTTGGC
1 GATTTGAGTAAGCTTGGC
** *
52060834 GATTTGAGTAAGCGCGGA
1 GATTTGAGTAAGCTTGGC
* * *
52060852 GATTTGTGCATGCTTGGC
1 GATTTGAGTAAGCTTGGC
* * *
52060870 GATTTCAGTACGCTTGGAG
1 GATTTGAGTAAGCTTGG-C
52060889 GA-TTGAGTAAGCT
1 GATTTGAGTAAGCT
52060902 CGGTGATCTC
Statistics
Matches: 51, Mismatches: 16, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
18 49 0.96
19 2 0.04
ACGTcount: A:0.22, C:0.13, G:0.34, T:0.31
Consensus pattern (18 bp):
GATTTGAGTAAGCTTGGC
Found at i:52069913 original size:24 final size:24
Alignment explanation
Indices: 52069883--52069942 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
52069873 CAATGGTCTG
52069883 GGTCGGGTTCGATCAATGGGTTCA
1 GGTCGGGTTCGATCAATGGGTTCA
* * *
52069907 GGTCGGGTTTGGTCAATGGGTTCG
1 GGTCGGGTTCGATCAATGGGTTCA
*
52069931 GGTTGGG-TCGAT
1 GGTCGGGTTCGAT
52069943 TGGGTTCACA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 3 0.10
24 27 0.90
ACGTcount: A:0.12, C:0.13, G:0.43, T:0.32
Consensus pattern (24 bp):
GGTCGGGTTCGATCAATGGGTTCA
Found at i:52069933 original size:19 final size:20
Alignment explanation
Indices: 52069909--52069949 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
52069899 TGGGTTCAGG
*
52069909 TCGGGTTTGGTC-AATGGGT
1 TCGGGTTGGGTCGAATGGGT
*
52069928 TCGGGTTGGGTCGATTGGGT
1 TCGGGTTGGGTCGAATGGGT
52069948 TC
1 TC
52069950 ACATAGTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.07, C:0.12, G:0.44, T:0.37
Consensus pattern (20 bp):
TCGGGTTGGGTCGAATGGGT
Found at i:52077102 original size:19 final size:19
Alignment explanation
Indices: 52077080--52077117 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
52077070 CAAAAATTTG
52077080 ATAAATAAATA-AAAATAAA
1 ATAAA-AAATATAAAATAAA
*
52077099 ATAAAATATATAAAATAAA
1 ATAAAAAATATAAAATAAA
52077118 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
ATAAAAAATATAAAATAAA
Found at i:52077750 original size:4 final size:4
Alignment explanation
Indices: 52077743--52077784 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
52077733 ATTTATTTAT
* *
52077743 TAAA TAAA TAAA TAAA TAAA GAAA T-AA TAAAA TTAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA T-AAA TAAA TAAA TA
52077785 TATACAAGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 3 0.09
4 26 0.81
5 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:52080374 original size:17 final size:17
Alignment explanation
Indices: 52080345--52080380 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
52080335 TTATTATCTC
52080345 AATTTAAATATATAAAA
1 AATTTAAATATATAAAA
52080362 AATTTCAAA-ATATAAAA
1 AATTT-AAATATATAAAA
52080379 AA
1 AA
52080381 ATCATATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
AATTTAAATATATAAAA
Found at i:52080488 original size:13 final size:13
Alignment explanation
Indices: 52080465--52080498 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
52080455 TAATTCCTTT
*
52080465 TAAAGATTAATAA
1 TAAAAATTAATAA
*
52080478 TCAAAATTAATAA
1 TAAAAATTAATAA
52080491 TAAAAATT
1 TAAAAATT
52080499 GACTTTTTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (13 bp):
TAAAAATTAATAA
Found at i:52080718 original size:2 final size:2
Alignment explanation
Indices: 52080711--52080735 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
52080701 TTAGATGAGA
52080711 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
52080736 ACACATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:52084801 original size:17 final size:16
Alignment explanation
Indices: 52084781--52084822 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
52084771 ATTTTAATAT
*
52084781 TTAATAATTTTTATTTA
1 TTAATAATTTTT-TATA
52084798 TTAA-AATTTTTTATA
1 TTAATAATTTTTTATA
52084813 -TAATAATTTT
1 TTAATAATTTT
52084823 GATATGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 9 0.39
16 7 0.30
17 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTAATAATTTTTTATA
Found at i:52084820 original size:15 final size:17
Alignment explanation
Indices: 52084771--52084827 Score: 59
Period size: 16 Copynumber: 3.6 Consensus size: 17
52084761 ATATGATATT
*
52084771 ATTTTAATAT-TTAATA
1 ATTTTTATATATTAATA
*
52084787 ATTTTTATTTATTAA-A
1 ATTTTTATATATTAATA
52084803 ATTTTT-TATA-TAATA
1 ATTTTTATATATTAATA
*
52084818 ATTTTGATAT
1 ATTTTTATAT
52084828 GATTTTAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 3 0.09
15 9 0.26
16 18 0.53
17 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
ATTTTTATATATTAATA
Found at i:52085209 original size:15 final size:15
Alignment explanation
Indices: 52085189--52085219 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
52085179 TTTAATGGAT
52085189 GGATTGAGATATTTA
1 GGATTGAGATATTTA
52085204 GGATTGAGATATTTA
1 GGATTGAGATATTTA
52085219 G
1 G
52085220 ATCGCAACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.39
Consensus pattern (15 bp):
GGATTGAGATATTTA
Found at i:52085937 original size:25 final size:25
Alignment explanation
Indices: 52085907--52085960 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
52085897 ATTTTAAAAT
52085907 ATAAATACAATTATTTTTATATTG-A
1 ATAAATACAATTATTTTTAT-TTGTA
52085932 ATAAATACAATTATTTTTATTTGTA
1 ATAAATACAATTATTTTTATTTGTA
52085957 ATAA
1 ATAA
52085961 GCTAATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 3 0.11
25 25 0.89
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (25 bp):
ATAAATACAATTATTTTTATTTGTA
Found at i:52086241 original size:31 final size:31
Alignment explanation
Indices: 52086206--52086267 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
52086196 AATTTGGTTC
52086206 TTGAACTATTCAAAAATTTTCATTTAAGTCA
1 TTGAACTATTCAAAAATTTTCATTTAAGTCA
* * * *
52086237 TTGAATTATTTAAAAGTTTTTATTTAAGTCA
1 TTGAACTATTCAAAAATTTTCATTTAAGTCA
52086268 CTAGACTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (31 bp):
TTGAACTATTCAAAAATTTTCATTTAAGTCA
Found at i:52087769 original size:8 final size:8
Alignment explanation
Indices: 52087748--52087778 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
52087738 ATTTATGTTG
52087748 TTTAAAATT
1 TTTAAAA-T
52087757 TTTAAAAT
1 TTTAAAAT
52087765 TTTAAAAT
1 TTTAAAAT
52087773 TTTAAA
1 TTTAAA
52087779 TTAATAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.68
9 7 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTAAAAT
Found at i:52088309 original size:18 final size:18
Alignment explanation
Indices: 52088282--52088324 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
52088272 TAATTAATTT
*
52088282 TTAATCAAATTAAATTAA
1 TTAATCAAATTAAATCAA
*
52088300 TTAATTAAATTAAATCAA
1 TTAATCAAATTAAATCAA
52088318 TTCAATC
1 TT-AATC
52088325 CATTAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAATCAAATTAAATCAA
Found at i:52099331 original size:23 final size:23
Alignment explanation
Indices: 52099305--52099357 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
52099295 TACATGGATA
*
52099305 AAATAAAATAAATAGATA-CAATT
1 AAATAAAATAAATA-ATATAAATT
* *
52099328 AAATACAATTAATAATATAAATT
1 AAATAAAATAAATAATATAAATT
52099351 -AATAAAA
1 AAATAAAA
52099358 CATAATAGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (23 bp):
AAATAAAATAAATAATATAAATT
Found at i:52099568 original size:15 final size:14
Alignment explanation
Indices: 52099548--52099588 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
52099538 ATGACATAAG
52099548 AAATAAATAACAAAC
1 AAATAAATAA-AAAC
52099563 AAATAAATAAAAAC
1 AAATAAATAAAAAC
52099577 AAA-ATAATAAAA
1 AAATA-AATAAAA
52099589 TAATAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 1 0.04
14 14 0.56
15 10 0.40
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (14 bp):
AAATAAATAAAAAC
Found at i:52102034 original size:17 final size:16
Alignment explanation
Indices: 52102012--52102081 Score: 68
Period size: 17 Copynumber: 4.1 Consensus size: 16
52102002 CGCAAAACTA
52102012 CGAGCTCACCATATCTG
1 CGAGCTCACCA-ATCTG
*
52102029 CGAGCTCACCAAGTTTG
1 CGAGCTCACCAA-TCTG
*
52102046 CGAGCTCATCCAAACATG
1 CGAGCTCA-CCAATC-TG
*
52102064 TGAGCTCACCAAATCTG
1 CGAGCTCACC-AATCTG
52102081 C
1 C
52102082 TAAGTCACAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
16 1 0.02
17 26 0.60
18 16 0.37
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (16 bp):
CGAGCTCACCAATCTG
Found at i:52103445 original size:12 final size:12
Alignment explanation
Indices: 52103428--52103469 Score: 84
Period size: 12 Copynumber: 3.5 Consensus size: 12
52103418 AGCACATCTT
52103428 TGTGAACCCTAC
1 TGTGAACCCTAC
52103440 TGTGAACCCTAC
1 TGTGAACCCTAC
52103452 TGTGAACCCTAC
1 TGTGAACCCTAC
52103464 TGTGAA
1 TGTGAA
52103470 GTCTAGTTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (12 bp):
TGTGAACCCTAC
Found at i:52108373 original size:153 final size:153
Alignment explanation
Indices: 52108107--52108382 Score: 374
Period size: 153 Copynumber: 1.8 Consensus size: 153
52108097 TTTGATAATC
* * * * * *
52108107 CAAGGAATTGAAGGTTGGATAGTCGAGTAAGAGATGCAGGTATGCTGACGAAATTGTTCTCTCTA
1 CAAGAAATTCAAGCTTGGAAAGTCGAGTAAGAGAGGCAGGTATGCTGACGAAATTGTTCTCCCTA
*** ** * *
52108172 AGATCAAGTTTTTTCAAAGAGGATAGACAAGAAATATCATTAGTAATATCTCCTTCACCAAAATG
66 AGATCAAGACGTCCCAAAGAGGATAGACAAGAAATATCACTAGGAATATCTCCTTCACCAAAATG
52108237 GCACAAGCCGCAATTAGCCAATA
131 GCACAAGCCGCAATTAGCCAATA
* * *
52108260 CAAGAAATTCAAGCTTGGAAAGTCGAGTAAGAGGGGCAGGTATGTTGATGAAATTGTTAC-CCCT
1 CAAGAAATTCAAGCTTGGAAAGTCGAGTAAGAGAGGCAGGTATGCTGACGAAATTGTT-CTCCCT
* *
52108324 AAGATTAAGACGTCCCAAAGAGGATAGACCAGAAATATCACTAGGAATATCTCCTTCAC
65 AAGATCAAGACGTCCCAAAGAGGATAGACAAGAAATATCACTAGGAATATCTCCTTCAC
52108383 AAAGACTGCG
Statistics
Matches: 104, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
153 103 0.99
154 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (153 bp):
CAAGAAATTCAAGCTTGGAAAGTCGAGTAAGAGAGGCAGGTATGCTGACGAAATTGTTCTCCCTA
AGATCAAGACGTCCCAAAGAGGATAGACAAGAAATATCACTAGGAATATCTCCTTCACCAAAATG
GCACAAGCCGCAATTAGCCAATA
Found at i:52121142 original size:99 final size:99
Alignment explanation
Indices: 52121027--52121223 Score: 243
Period size: 99 Copynumber: 2.0 Consensus size: 99
52121017 GTAGAGATGG
* * * * * *
52121027 AGAAGAAAAGAAAAAAAATAAAAAAAATACCTTAATCCTTAAATCTCTTCCTCACACATGATGGA
1 AGAAGAAAAGAAAAAAAATAAAAAAAATACCCTAATCCCTAAATCCCTTACTAACACATGATGAA
*
52121092 TTGAAAAA-AAGGCTCAAAATTAAATATGAGGTGA
66 TTGAAAAACAA-ACTCAAAATTAAATATGAGGTGA
* ** * * **
52121126 AGAAGAAAAGAGAAAAAATTGAGAAAATACCCTAATCCCTAAATCCCTTATTAACTTATGATGAA
1 AGAAGAAAAGAAAAAAAATAAAAAAAATACCCTAATCCCTAAATCCCTTACTAACACATGATGAA
*
52121191 TTGAAAAACAAACTCAAAATTTAATATGAGGTG
66 TTGAAAAACAAACTCAAAATTAAATATGAGGTG
52121224 GAAATTTCCT
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
99 80 0.98
100 2 0.02
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.23
Consensus pattern (99 bp):
AGAAGAAAAGAAAAAAAATAAAAAAAATACCCTAATCCCTAAATCCCTTACTAACACATGATGAA
TTGAAAAACAAACTCAAAATTAAATATGAGGTGA
Found at i:52121412 original size:14 final size:14
Alignment explanation
Indices: 52121393--52121428 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
52121383 TTGTTTGACT
*
52121393 GAAAATGGTTTCTA
1 GAAAATGATTTCTA
*
52121407 GAAAATGATTTCTG
1 GAAAATGATTTCTA
52121421 GAAAATGA
1 GAAAATGA
52121429 ATTATCTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:52126272 original size:17 final size:17
Alignment explanation
Indices: 52126250--52126296 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
52126240 CGCAAAACTA
*
52126250 CGAGCTCACCATA-TTTG
1 CGAGCTCACCA-AGTCTG
*
52126267 CGAGCTCTCCAAGTCTG
1 CGAGCTCACCAAGTCTG
52126284 CGAGCTCATCCAA
1 CGAGCTCA-CCAA
52126297 ACATGTAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 1 0.04
17 20 0.80
18 4 0.16
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (17 bp):
CGAGCTCACCAAGTCTG
Found at i:52140526 original size:153 final size:153
Alignment explanation
Indices: 52140264--52140549 Score: 412
Period size: 153 Copynumber: 1.9 Consensus size: 153
52140254 TCACTCACTC
52140264 CAAGATATTCAAGATTGGAAAGACGAGTAAGAGACGCAGCTATGCTGGTGAAATTGTTACCACTA
1 CAAGATATTCAAGATTGGAAAGACGAGTAAGAGACGCAGCTATGCTGGTGAAATTGTTACCACTA
* * * * * *
52140329 AGAACAAGAGATCTCAATGAAGATAGACCAGAAATATCACTAGGAATATCTCCTTCACCCATATT
66 AGAACAAGAGATATCAAAGAAGATAGACAAGAAATAGCACTAGGAATATCTCCTTCACCAAGATT
52140394 GCACAGGCTGCACTTTGACAATA
131 GCACAGGCTGCACTTTGACAATA
* * * * * * *
52140417 CAAGATCTTCAAGCTTGGAGAGTCGAGTAAGAGACGCCGGTATGCTGTTGAAATTGTTACCACTA
1 CAAGATATTCAAGATTGGAAAGACGAGTAAGAGACGCAGCTATGCTGGTGAAATTGTTACCACTA
* * *
52140482 AGATCAAGACG-TATCAAAGAGGATAGACAAGAAATAGCAGTAGGAATATCTCCTTCACCAAGAT
66 AGAACAAGA-GATATCAAAGAAGATAGACAAGAAATAGCACTAGGAATATCTCCTTCACCAAGAT
52140546 TGCA
130 TGCA
52140550 GTCCCTTAGT
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
153 115 0.99
154 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (153 bp):
CAAGATATTCAAGATTGGAAAGACGAGTAAGAGACGCAGCTATGCTGGTGAAATTGTTACCACTA
AGAACAAGAGATATCAAAGAAGATAGACAAGAAATAGCACTAGGAATATCTCCTTCACCAAGATT
GCACAGGCTGCACTTTGACAATA
Found at i:52151309 original size:38 final size:38
Alignment explanation
Indices: 52151265--52151340 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
52151255 GCTAAATGGA
52151265 CTTGGCGTTTTGCGGGAGAAAAAGAAGCATTATGGAGG
1 CTTGGCGTTTTGCGGGAGAAAAAGAAGCATTATGGAGG
52151303 CTTGGCGTTTTGCGGGAGAAAAAGAAGCATTATGGAGG
1 CTTGGCGTTTTGCGGGAGAAAAAGAAGCATTATGGAGG
52151341 AAAGTCATTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.11, G:0.37, T:0.24
Consensus pattern (38 bp):
CTTGGCGTTTTGCGGGAGAAAAAGAAGCATTATGGAGG
Found at i:52158435 original size:24 final size:24
Alignment explanation
Indices: 52158367--52158436 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
52158357 ACAAAGATTT
* *
52158367 TTATACTAATAAATGTAAAAATATG
1 TTATACTAATAAATGT-TAAATATA
** *
52158392 TTATGTTAATAAATGCTAAATATA
1 TTATACTAATAAATGTTAAATATA
*
52158416 TTATACTAATAAATATTAAAT
1 TTATACTAATAAATGTTAAAT
52158437 GTTTTAGTCA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
24 23 0.64
25 13 0.36
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (24 bp):
TTATACTAATAAATGTTAAATATA
Found at i:52159802 original size:41 final size:41
Alignment explanation
Indices: 52159745--52159840 Score: 156
Period size: 41 Copynumber: 2.3 Consensus size: 41
52159735 GAATTTTATT
*
52159745 TTAACAAGATTTCTAGTCACCCAATTCTAAAAATCTCCACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAAAAATCTCCACC
*
52159786 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAAAAATCTCCACC
* *
52159827 TTGACAACAATTCT
1 TTAACAAGAATTCT
52159841 CTACGAATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.36, C:0.29, G:0.05, T:0.29
Consensus pattern (41 bp):
TTAACAAGAATTCTAGTCACCCAATTCTAAAAATCTCCACC
Found at i:52169467 original size:15 final size:15
Alignment explanation
Indices: 52169444--52169478 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
52169434 TAACAATTAG
* *
52169444 TTAATTTTTAAAATT
1 TTAAATTTTAAAAAT
52169459 TTAAATTTTAAAAAT
1 TTAAATTTTAAAAAT
52169474 TTAAA
1 TTAAA
52169479 AATTAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTAAATTTTAAAAAT
Found at i:52172048 original size:2 final size:2
Alignment explanation
Indices: 52172041--52172072 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
52172031 CATATTCATA
52172041 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52172073 CTAAGAGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:52172572 original size:96 final size:97
Alignment explanation
Indices: 52172386--52172572 Score: 245
Period size: 96 Copynumber: 1.9 Consensus size: 97
52172376 GATTTTCCTT
* * *
52172386 TTTTTTACCTTAACAATATATTGGACTTTTTGACGCGAAATGAAATGACAACCCAAGCACTTCAT
1 TTTTTTACCTTAAAAATATATTGGACTTTTTGACGCGAAATGAAATAACAACACAAGCACTTCAT
* *
52172451 CTCGGTTACTCAGCTCAACATACTCCTAATCA
66 CCCGGTTACTCAGCTCAACACACTCCTAATCA
* * * *
52172483 TTTTTTA-CTTAAAAATATATTGGCCCTTTTT-ATGTGAAATGAAATAATAACACAAGCACTTCA
1 TTTTTTACCTTAAAAATATATTGG-ACTTTTTGACGCGAAATGAAATAACAACACAAGCACTTCA
*
52172546 TCCCGGTTACTC-GGTCTAACACACTCC
65 TCCCGGTTACTCAGCTC-AACACACTCC
52172573 AAATTTATTT
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
95 3 0.04
96 62 0.79
97 13 0.17
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (97 bp):
TTTTTTACCTTAAAAATATATTGGACTTTTTGACGCGAAATGAAATAACAACACAAGCACTTCAT
CCCGGTTACTCAGCTCAACACACTCCTAATCA
Found at i:52176708 original size:13 final size:13
Alignment explanation
Indices: 52176674--52176714 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
52176664 AAATTAAATA
52176674 TAAATAAT-ATCC
1 TAAATAATAATCC
*
52176686 T-AATAATAATTC
1 TAAATAATAATCC
*
52176698 TAAATATTAATCC
1 TAAATAATAATCC
52176711 TAAA
1 TAAA
52176715 ACTAGAGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
11 6 0.25
12 5 0.21
13 13 0.54
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (13 bp):
TAAATAATAATCC
Found at i:52180382 original size:14 final size:15
Alignment explanation
Indices: 52180352--52180384 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
52180342 GCATTTTTAA
52180352 TTTAA-TTTTTCTAT
1 TTTAATTTTTTCTAT
*
52180366 TTTAATTTTTTCTTT
1 TTTAATTTTTTCTAT
52180381 TTTA
1 TTTA
52180385 TTTGCTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTAATTTTTTCTAT
Found at i:52204211 original size:21 final size:21
Alignment explanation
Indices: 52204185--52204295 Score: 115
Period size: 20 Copynumber: 5.4 Consensus size: 21
52204175 GTACATTCTC
*
52204185 AATTTTTTGGTATTCCCTAGT
1 AATTTTTTGATATTCCCTAGT
*
52204206 AATTTTTT-ATATTCCCTCGT
1 AATTTTTTGATATTCCCTAGT
*
52204226 -ATTTTTTTATATTCCCTAGT
1 AATTTTTTGATATTCCCTAGT
*
52204246 AATTTTTT-ATATTCCCTCGT
1 AATTTTTTGATATTCCCTAGT
* *
52204266 ATTTTTTTGTTACTT-CCTCA-T
1 AATTTTTTGATA-TTCCCT-AGT
52204287 AATTTTTTG
1 AATTTTTTG
52204296 GTACTTCTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
19 7 0.09
20 39 0.51
21 29 0.38
22 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.07, T:0.58
Consensus pattern (21 bp):
AATTTTTTGATATTCCCTAGT
Found at i:52204273 original size:20 final size:20
Alignment explanation
Indices: 52204185--52204272 Score: 124
Period size: 20 Copynumber: 4.4 Consensus size: 20
52204175 GTACATTCTC
*
52204185 AATTTTTTGGTATTCCCTAGT
1 AATTTTTT-ATATTCCCTAGT
*
52204206 AATTTTTTATATTCCCTCGT
1 AATTTTTTATATTCCCTAGT
*
52204226 ATTTTTTTATATTCCCTAGT
1 AATTTTTTATATTCCCTAGT
*
52204246 AATTTTTTATATTCCCTCGT
1 AATTTTTTATATTCCCTAGT
52204266 -ATTTTTT
1 AATTTTTT
52204273 TGTTACTTCC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
19 7 0.11
20 46 0.75
21 8 0.13
ACGTcount: A:0.19, C:0.16, G:0.07, T:0.58
Consensus pattern (20 bp):
AATTTTTTATATTCCCTAGT
Found at i:52204293 original size:40 final size:40
Alignment explanation
Indices: 52204186--52204273 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
52204176 TACATTCTCA
**
52204186 ATTTTTTGGTATTCCCTAGTAATTTTTTATATTCCCTCGT
1 ATTTTTTTATATTCCCTAGTAATTTTTTATATTCCCTCGT
52204226 ATTTTTTTATATTCCCTAGTAATTTTTTATATTCCCTCGT
1 ATTTTTTTATATTCCCTAGTAATTTTTTATATTCCCTCGT
52204266 ATTTTTTT
1 ATTTTTTT
52204274 GTTACTTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.18, C:0.16, G:0.07, T:0.59
Consensus pattern (40 bp):
ATTTTTTTATATTCCCTAGTAATTTTTTATATTCCCTCGT
Found at i:52214692 original size:19 final size:19
Alignment explanation
Indices: 52214670--52214714 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
52214660 TTATATTAGG
52214670 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
52214689 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
52214708 ATTTAAT
1 ATTTAAT
52214715 TTATGTTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:52215539 original size:15 final size:15
Alignment explanation
Indices: 52215521--52215571 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
52215511 CCCTATTTTC
52215521 TATTTCTTTTAATTT
1 TATTTCTTTTAATTT
*
52215536 TATTTTCTTTTATTTT
1 TA-TTTCTTTTAATTT
* *
52215552 TAATTCTGTTT-CTTT
1 TATTTCT-TTTAATTT
52215567 TATTT
1 TATTT
52215572 TTCCTTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 13 0.43
16 17 0.57
ACGTcount: A:0.16, C:0.08, G:0.02, T:0.75
Consensus pattern (15 bp):
TATTTCTTTTAATTT
Found at i:52215541 original size:22 final size:22
Alignment explanation
Indices: 52215514--52215573 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
52215504 TCGACTTCCC
52215514 TATTTTCTATTT-CTTTTAATTT
1 TATTTTCT-TTTACTTTTAATTT
* *
52215536 TATTTTCTTTTATTTTTAATTC
1 TATTTTCTTTTACTTTTAATTT
* *
52215558 T-GTTTCTTTTATTTTT
1 TATTTTCTTTTACTTTT
52215574 CCTTAAATCG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.50
22 17 0.50
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (22 bp):
TATTTTCTTTTACTTTTAATTT
Found at i:52215544 original size:16 final size:16
Alignment explanation
Indices: 52215523--52215553 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
52215513 CTATTTTCTA
52215523 TTTCTTTTAATTTTAT
1 TTTCTTTTAATTTTAT
*
52215539 TTTCTTTTATTTTTA
1 TTTCTTTTAATTTTA
52215554 ATTCTGTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTCTTTTAATTTTAT
Found at i:52217403 original size:36 final size:36
Alignment explanation
Indices: 52217363--52217437 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
52217353 ATATCAAGTA
52217363 GGTGGAAAATTGCATATATGGGTATCTGACAAAATG
1 GGTGGAAAATTGCATATATGGGTATCTGACAAAATG
52217399 GGTGGAAAATTGCATATATGGGTATCTGACAAAATG
1 GGTGGAAAATTGCATATATGGGTATCTGACAAAATG
52217435 GGT
1 GGT
52217438 AATTAGAGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (36 bp):
GGTGGAAAATTGCATATATGGGTATCTGACAAAATG
Found at i:52223817 original size:44 final size:44
Alignment explanation
Indices: 52223767--52223867 Score: 193
Period size: 44 Copynumber: 2.3 Consensus size: 44
52223757 TCGTTGTTAG
52223767 TTATGCTTTTAGAGAATGAGTCAATATTCTATAGCGATAATAAT
1 TTATGCTTTTAGAGAATGAGTCAATATTCTATAGCGATAATAAT
*
52223811 TTATGCTTTTTGAGAATGAGTCAATATTCTATAGCGATAATAAT
1 TTATGCTTTTAGAGAATGAGTCAATATTCTATAGCGATAATAAT
52223855 TTATGCTTTTAGA
1 TTATGCTTTTAGA
52223868 AAATAATTTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.42
Consensus pattern (44 bp):
TTATGCTTTTAGAGAATGAGTCAATATTCTATAGCGATAATAAT
Found at i:52242774 original size:24 final size:24
Alignment explanation
Indices: 52242733--52242807 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
52242723 AGTTTGACTT
*
52242733 AAACAAATAAACATAGTTTAATTG
1 AAACAAATAAACAAAGTTTAATTG
* *
52242757 AAACAAATAAATAGAGTTTAATTG
1 AAACAAATAAACAAAGTTTAATTG
* * *
52242781 AAACTATTAAACAAAGTTTAACTG
1 AAACAAATAAACAAAGTTTAATTG
52242805 AAA
1 AAA
52242808 GATTATTTCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.55, C:0.08, G:0.09, T:0.28
Consensus pattern (24 bp):
AAACAAATAAACAAAGTTTAATTG
Found at i:52244779 original size:24 final size:24
Alignment explanation
Indices: 52244740--52244806 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
52244730 TGACTCAAAT
* *
52244740 AAATAAATAGATTTTAATTGAAAC
1 AAATAAACAGAATTTAATTGAAAC
52244764 AAATAAACAGAATTTAATTGAAAC
1 AAATAAACAGAATTTAATTGAAAC
* *
52244788 AATTAAACAGAGTTTAATT
1 AAATAAACAGAATTTAATT
52244807 AAAAGATTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (24 bp):
AAATAAACAGAATTTAATTGAAAC
Found at i:52250494 original size:18 final size:17
Alignment explanation
Indices: 52250462--52250496 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
52250452 ATTGAAATTA
52250462 TCAAAATTATATTTTTT
1 TCAAAATTATATTTTTT
*
52250479 TCAAATATTTTATTTTTT
1 TCAAA-ATTATATTTTTT
52250497 CTTTGCTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (17 bp):
TCAAAATTATATTTTTT
Found at i:52251228 original size:14 final size:15
Alignment explanation
Indices: 52251202--52251232 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
52251192 TCCAGGTTCA
52251202 TCAACACATTTTTCT
1 TCAACACATTTTTCT
52251217 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
52251231 TC
1 TC
52251233 CCATTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:52256185 original size:18 final size:17
Alignment explanation
Indices: 52256158--52256196 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
52256148 GGATGTTCAA
*
52256158 CCTTACACCTTTCATCTT
1 CCTTAAACCTTTCATC-T
52256176 CCTTAAACCTTTCATCT
1 CCTTAAACCTTTCATCT
52256193 CCTT
1 CCTT
52256197 GTAACATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.18, C:0.38, G:0.00, T:0.44
Consensus pattern (17 bp):
CCTTAAACCTTTCATCT
Found at i:52262129 original size:43 final size:43
Alignment explanation
Indices: 52262076--52262208 Score: 187
Period size: 43 Copynumber: 3.1 Consensus size: 43
52262066 AAAAATGCCA
* *
52262076 CTAAAAAACATGATCTTTAGCGGCACTTTTCTTCCAAACGCCG
1 CTAAAGAACATGGTCTTTAGCGGCACTTTTCTTCCAAACGCCG
* *
52262119 CTAAAGAACATGGTCTTTAGCGGGACTTTCCTTCCAAACGCCG
1 CTAAAGAACATGGTCTTTAGCGGCACTTTTCTTCCAAACGCCG
* * *
52262162 CTAAAGAACATGGTATTTAGCGACACTTTT-TCCACAAACGCCG
1 CTAAAGAACATGGTCTTTAGCGGCACTTTTCTTC-CAAACGCCG
52262205 CTAA
1 CTAA
52262209 CATTAACAGA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 2 0.03
43 78 0.98
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
CTAAAGAACATGGTCTTTAGCGGCACTTTTCTTCCAAACGCCG
Found at i:52268560 original size:16 final size:16
Alignment explanation
Indices: 52268541--52268578 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
52268531 GTCTTTCTGG
52268541 TTTTCTATCCTTCCAA
1 TTTTCTATCCTTCCAA
* *
52268557 TTTTCCATCCTTCTAA
1 TTTTCTATCCTTCCAA
52268573 TTTTCT
1 TTTTCT
52268579 TTCTACTCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.16, C:0.29, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTCTATCCTTCCAA
Found at i:52269190 original size:14 final size:15
Alignment explanation
Indices: 52269164--52269194 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
52269154 TCCAGGTTCA
52269164 TCAACACATTTTTCT
1 TCAACACATTTTTCT
52269179 TCAACA-ATTTTTCT
1 TCAACACATTTTTCT
52269193 TC
1 TC
52269195 CCAATTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (15 bp):
TCAACACATTTTTCT
Found at i:52273679 original size:17 final size:17
Alignment explanation
Indices: 52273659--52273711 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
52273649 TGTTATTAAT
52273659 TAATTTTCATCACCTCA
1 TAATTTTCATCACCTCA
* * *
52273676 TAATGTT-ATTA-AT--
1 TAATTTTCATCACCTCA
52273689 TAATTTTCATCACCTCA
1 TAATTTTCATCACCTCA
52273706 TAATTT
1 TAATTT
52273712 ATTTATTAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 8
0.65 0.15 0.20
Matches are distributed among these distances:
13 6 0.23
14 3 0.12
15 2 0.08
16 3 0.12
17 12 0.46
ACGTcount: A:0.32, C:0.19, G:0.02, T:0.47
Consensus pattern (17 bp):
TAATTTTCATCACCTCA
Found at i:52273683 original size:30 final size:30
Alignment explanation
Indices: 52273647--52273721 Score: 134
Period size: 30 Copynumber: 2.5 Consensus size: 30
52273637 TACCGTAATC
52273647 AATGTTATTAATTAATTTTCATCACCTCAT
1 AATGTTATTAATTAATTTTCATCACCTCAT
52273677 AATGTTATTAATTAATTTTCATCACCTCAT
1 AATGTTATTAATTAATTTTCATCACCTCAT
*
52273707 AAT-TTATTTATTAAT
1 AATGTTATTAATTAAT
52273722 CTTTTATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
29 11 0.25
30 33 0.75
ACGTcount: A:0.35, C:0.13, G:0.03, T:0.49
Consensus pattern (30 bp):
AATGTTATTAATTAATTTTCATCACCTCAT
Found at i:52274503 original size:23 final size:24
Alignment explanation
Indices: 52274477--52274523 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
52274467 TATTTGAATT
*
52274477 ATTCAAGTT-ATTTAAATTCGAAA
1 ATTCAAGTTGATTTAAACTCGAAA
* *
52274500 ATTCAATTTGATTTGAACTCGAAA
1 ATTCAAGTTGATTTAAACTCGAAA
52274524 TTCGAAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (24 bp):
ATTCAAGTTGATTTAAACTCGAAA
Found at i:52277235 original size:9 final size:9
Alignment explanation
Indices: 52277195--52277236 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
52277185 TTAAAATGTT
*
52277195 AAATTTAAA
1 AAATTTTAA
52277204 AAATTTTATA
1 AAATTTTA-A
52277214 AATATTTT-A
1 AA-ATTTTAA
52277223 AAATTTTAA
1 AAATTTTAA
52277232 AAATT
1 AAATT
52277237 ATTGTGAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 5 0.17
9 16 0.55
10 3 0.10
11 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AAATTTTAA
Found at i:52281907 original size:21 final size:23
Alignment explanation
Indices: 52281881--52281924 Score: 74
Period size: 21 Copynumber: 2.0 Consensus size: 23
52281871 TGTGCTAGCA
52281881 CTACTGATACAAGT-ATG-ATTT
1 CTACTGATACAAGTCATGCATTT
52281902 CTACTGATACAAGTCATGCATTT
1 CTACTGATACAAGTCATGCATTT
52281925 ACCAATACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 14 0.67
22 3 0.14
23 4 0.19
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (23 bp):
CTACTGATACAAGTCATGCATTT
Found at i:52285446 original size:3 final size:3
Alignment explanation
Indices: 52285438--52285464 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
52285428 ACTTCTCTCC
52285438 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
52285465 GTGCCATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:52294085 original size:20 final size:20
Alignment explanation
Indices: 52294060--52294115 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
52294050 AGACCATGTC
*
52294060 TGGTATTGCTTGATGCTCCT
1 TGGTATTGCTCGATGCTCCT
*
52294080 TGGTATTGCTCGATGCTTCT
1 TGGTATTGCTCGATGCTCCT
* *
52294100 TGATGTTGCTCGATGC
1 TGGTATTGCTCGATGC
52294116 ATGCTGGTGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.20, G:0.27, T:0.43
Consensus pattern (20 bp):
TGGTATTGCTCGATGCTCCT
Found at i:52298161 original size:31 final size:31
Alignment explanation
Indices: 52298119--52298206 Score: 99
Period size: 31 Copynumber: 2.8 Consensus size: 31
52298109 GATACTTTTT
* *
52298119 TTTTTGTCTAATTTAGTA-CTAAAATTTGACAC
1 TTTTT-TCTAATTTAATACCT-AAACTTGACAC
52298151 TTTTTTCTAATTTAATACCTAAACTTGACAC
1 TTTTTTCTAATTTAATACCTAAACTTGACAC
* * *
52298182 TTTTTT-TAAGTTGATACTTAAACTT
1 TTTTTTCTAATTTAATACCTAAACTT
52298207 TTTGGGTACA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
30 16 0.32
31 27 0.54
32 7 0.14
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.49
Consensus pattern (31 bp):
TTTTTTCTAATTTAATACCTAAACTTGACAC
Found at i:52298526 original size:30 final size:31
Alignment explanation
Indices: 52298490--52298596 Score: 114
Period size: 30 Copynumber: 3.5 Consensus size: 31
52298480 TGGGTCAAAA
52298490 AAATTTAGGTACCAAATTAA-AAAAAATATC
1 AAATTTAGGTACCAAATTAAGAAAAAATATC
* * *
52298520 AAATTTAGATACTAAATT-AGATAAAAA-A-A
1 AAATTTAGGTACCAAATTAAGA-AAAAATATC
** *
52298549 AAATTTAGGTGTCAAATTAAGAAAAATTATC
1 AAATTTAGGTACCAAATTAAGAAAAAATATC
*
52298580 AAATTTAAGTACCAAAT
1 AAATTTAGGTACCAAAT
52298597 ATTATATTAA
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
29 19 0.32
30 22 0.37
31 19 0.32
ACGTcount: A:0.55, C:0.07, G:0.08, T:0.29
Consensus pattern (31 bp):
AAATTTAGGTACCAAATTAAGAAAAAATATC
Found at i:52298878 original size:19 final size:18
Alignment explanation
Indices: 52298802--52298906 Score: 70
Period size: 18 Copynumber: 5.7 Consensus size: 18
52298792 TTATTTTAAC
* *
52298802 ATTTTTAAACTTTTAATA
1 ATTTTTAAATTTTTTATA
* *
52298820 ATTTTCAAA-TATTTATA
1 ATTTTTAAATTTTTTATA
** **
52298837 ATTTATTGTATTTTTCTGGA
1 ATTT-TTAAATTTTT-TATA
52298857 ATTTTTAAATTTTTTAATA
1 ATTTTTAAATTTTTT-ATA
*
52298876 A-TTTTCAATTTTTTATA
1 ATTTTTAAATTTTTTATA
*
52298893 TTTTTTAAAATTTT
1 ATTTTT-AAATTTT
52298907 GGATAATTAA
Statistics
Matches: 65, Mismatches: 16, Indels: 11
0.71 0.17 0.12
Matches are distributed among these distances:
17 13 0.20
18 27 0.42
19 19 0.29
20 6 0.09
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTTTTAAATTTTTTATA
Found at i:52298906 original size:56 final size:55
Alignment explanation
Indices: 52298802--52298906 Score: 131
Period size: 56 Copynumber: 1.9 Consensus size: 55
52298792 TTATTTTAAC
**
52298802 ATTTTTAAACTTTTAATAATTTTCAAATATTTATAATTTATTGTATTTTTCTGGA
1 ATTTTTAAACTTTTAATAATTTTCAAATATTTATAATTTATTAAATTTTTCTGGA
* * * * *
52298857 ATTTTTAAATTTTTTAATAATTTTCAATTTTTTAT-ATTTTTTAAAATTTT
1 ATTTTTAAA-CTTTTAATAATTTTCAAATATTTATAATTTATTAAATTTTT
52298907 GGATAATTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
55 20 0.48
56 22 0.52
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (55 bp):
ATTTTTAAACTTTTAATAATTTTCAAATATTTATAATTTATTAAATTTTTCTGGA
Found at i:52298959 original size:25 final size:22
Alignment explanation
Indices: 52298926--52298976 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
52298916 ATTTTTTGAA
*
52298926 TTTATTAATTTTTATATTTCAATT
1 TTTATTAATATTTA-ATTT-AATT
*
52298950 TTTATATAATATTTAATTTTATT
1 TTTAT-TAATATTTAATTTAATT
52298973 TTTA
1 TTTA
52298977 AAATTCAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 7 0.29
24 9 0.38
25 8 0.33
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATTAATATTTAATTTAATT
Found at i:52299287 original size:54 final size:54
Alignment explanation
Indices: 52299224--52299331 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
52299214 GGTGTTATTA
52299224 TCTTTCTTGCGTGTAAGAAATTCTCAAACCTAATTTTTCTTTAGATTCCAACAC
1 TCTTTCTTGCGTGTAAGAAATTCTCAAACCTAATTTTTCTTTAGATTCCAACAC
52299278 TCTTTCTTGCGTGTAAGAAATTCTCAAACCTAATTTTTCTTTAGATTCCAACAC
1 TCTTTCTTGCGTGTAAGAAATTCTCAAACCTAATTTTTCTTTAGATTCCAACAC
52299332 CGACCTTGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TCTTTCTTGCGTGTAAGAAATTCTCAAACCTAATTTTTCTTTAGATTCCAACAC
Found at i:52311751 original size:14 final size:15
Alignment explanation
Indices: 52311727--52311755 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
52311717 CAGGTTCATT
52311727 AACACATTTTTCTTC
1 AACACATTTTTCTTC
52311742 AACA-ATTTTTCTTC
1 AACACATTTTTCTTC
52311756 CCATTTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (15 bp):
AACACATTTTTCTTC
Found at i:52317018 original size:21 final size:21
Alignment explanation
Indices: 52316992--52317036 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
52316982 ACAATCATAT
* *
52316992 AAAAAATTTGAATTATATGAA
1 AAAAAATTTAAATGATATGAA
*
52317013 AAAAAATTTAAATGGTATGAA
1 AAAAAATTTAAATGATATGAA
52317034 AAA
1 AAA
52317037 CCGTCATCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29
Consensus pattern (21 bp):
AAAAAATTTAAATGATATGAA
Found at i:52327884 original size:19 final size:19
Alignment explanation
Indices: 52327836--52327916 Score: 92
Period size: 19 Copynumber: 4.2 Consensus size: 19
52327826 ACTAAGATAG
* *
52327836 TTTAGGGTTTAGGATTTAAGA
1 TTTAAGGTTTAGGATTT--TA
*
52327857 TTTAGGGTTTAGGATTTTA
1 TTTAAGGTTTAGGATTTTA
52327876 TTTAAGGTTTAAGG-TTTTA
1 TTTAAGGTTT-AGGATTTTA
*
52327895 TTTAAGGTTTAGGGTTTTA
1 TTTAAGGTTTAGGATTTTA
52327914 TTT
1 TTT
52327917 GAGATTTAAG
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
18 3 0.05
19 33 0.59
20 3 0.05
21 17 0.30
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.52
Consensus pattern (19 bp):
TTTAAGGTTTAGGATTTTA
Found at i:52327924 original size:19 final size:19
Alignment explanation
Indices: 52327856--52327973 Score: 112
Period size: 19 Copynumber: 5.9 Consensus size: 19
52327846 AGGATTTAAG
*
52327856 ATTTAGGGTTT-AGGATTTT
1 ATTTAAGGTTTAAGG-TTTT
52327875 ATTTAAGGTTTAAGGTTTT
1 ATTTAAGGTTTAAGGTTTT
*
52327894 ATTTAAGGTTTAGGGTTTT
1 ATTTAAGGTTTAAGGTTTT
* *
52327913 ATTTGAGATTTAAGGTTAGTGTTTT
1 ATTTAAGGTTT-A----AG-GTTTT
*
52327938 ATTTAGGGTTTAAGGTTTT
1 ATTTAAGGTTTAAGGTTTT
*
52327957 ATTTAGGGTTTAAGGTT
1 ATTTAAGGTTTAAGGTT
52327974 AGGTTTTTAT
Statistics
Matches: 84, Mismatches: 8, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
19 63 0.75
20 6 0.07
24 2 0.02
25 13 0.15
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.52
Consensus pattern (19 bp):
ATTTAAGGTTTAAGGTTTT
Found at i:52327948 original size:63 final size:65
Alignment explanation
Indices: 52327835--52327995 Score: 188
Period size: 63 Copynumber: 2.5 Consensus size: 65
52327825 CACTAAGATA
*
52327835 GTTTAGGGTTTAGGATTTAAGATTTAGGGTTTAGGATTTTATTTAAGGTTTAAGGTTTTATTTAA
1 GTTTAGGGTTTA-GATTTAAGATTTAAGGTTTAGGATTTTATTTAAGGTTTAAGGTTTTATTTAA
52327900 G
65 G
* * * *
52327901 GTTTAGGGTTT-TATTTGAGATTTAAGG-TTAGTG-TTTTATTTAGGGTTTAAGGTTTTATTTAG
1 GTTTAGGGTTTAGATTTAAGATTTAAGGTTTAG-GATTTTATTTAAGGTTTAAGGTTTTATTTAA
52327963 G
65 G
* * **
52327964 GTTTAAGG-TTAGGTTT-TTATTTAAGGTTTAGG
1 GTTTAGGGTTTAGATTTAAGATTTAAGGTTTAGG
52327996 GTTTAGTTAT
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
62 11 0.13
63 46 0.56
64 14 0.17
66 11 0.13
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (65 bp):
GTTTAGGGTTTAGATTTAAGATTTAAGGTTTAGGATTTTATTTAAGGTTTAAGGTTTTATTTAAG
Found at i:52327955 original size:44 final size:43
Alignment explanation
Indices: 52327875--52327999 Score: 171
Period size: 44 Copynumber: 2.8 Consensus size: 43
52327865 TTAGGATTTT
52327875 ATTTAAGGTTTAAGGTTTTATTTAAGGTTTAGGGTTTTATTT-GAG
1 ATTTAAGG-TT-AGGTTTTATTTAAGGTTTAGGGTTTTATTTAG-G
* *
52327920 ATTTAAGGTTAGTGTTTTATTTAGGGTTTAAGGTTTTATTTAGG
1 ATTTAAGGTTAG-GTTTTATTTAAGGTTTAGGGTTTTATTTAGG
*
52327964 GTTTAAGGTTAGGTTTTTATTTAAGGTTTAGGGTTT
1 ATTTAAGGTTAGG-TTTTATTTAAGGTTTAGGGTTT
52328000 AGTTATTTAT
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
43 3 0.04
44 60 0.83
45 9 0.12
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (43 bp):
ATTTAAGGTTAGGTTTTATTTAAGGTTTAGGGTTTTATTTAGG
Found at i:52327991 original size:25 final size:25
Alignment explanation
Indices: 52327895--52328019 Score: 106
Period size: 25 Copynumber: 5.2 Consensus size: 25
52327885 TAAGGTTTTA
* *
52327895 TTTAAGGTTTAGGGTTTTATTT-GAGA
1 TTTAAGG-TTAGGTTTTTATTTAG-GG
52327921 TTTAAGGTTA-GTGTTTTATTTAGGG
1 TTTAAGGTTAGGT-TTTTATTTAGGG
52327946 TTT-A----AGG-TTTTATTTAGGG
1 TTTAAGGTTAGGTTTTTATTTAGGG
*
52327965 TTTAAGGTTAGGTTTTTATTTAAGG
1 TTTAAGGTTAGGTTTTTATTTAGGG
*
52327990 TTTAGGGTTTA-GTTATTTATTTAGGG
1 TTTAAGG-TTAGGTT-TTTATTTAGGG
52328016 TTTA
1 TTTA
52328020 GTTTTTAGTG
Statistics
Matches: 83, Mismatches: 5, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
19 15 0.18
20 2 0.02
21 1 0.01
24 5 0.06
25 35 0.42
26 25 0.30
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.53
Consensus pattern (25 bp):
TTTAAGGTTAGGTTTTTATTTAGGG
Found at i:52328008 original size:26 final size:26
Alignment explanation
Indices: 52327939--52328064 Score: 141
Period size: 26 Copynumber: 4.9 Consensus size: 26
52327929 TAGTGTTTTA
*
52327939 TTTAGGGTTTAAGGT-TTTATTTAGGG
1 TTTAGGGTTT-AGTTATTTATTTAGGG
* *
52327965 TTTAAGG-TTAGGTT-TTTATTTAAGG
1 TTTAGGGTTTA-GTTATTTATTTAGGG
52327990 TTTAGGGTTTAGTTATTTATTTAGGG
1 TTTAGGGTTTAGTTATTTATTTAGGG
** *
52328016 TTTAGTTTTTAGTGATTTATTTAGGG
1 TTTAGGGTTTAGTTATTTATTTAGGG
* *
52328042 TTTAGTGTTTAGTGATTTATTTA
1 TTTAGGGTTTAGTTATTTATTTA
52328065 ATGTTTAGAG
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
24 1 0.01
25 23 0.26
26 64 0.73
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.55
Consensus pattern (26 bp):
TTTAGGGTTTAGTTATTTATTTAGGG
Done.