Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 2 of 182
Found at i:411667 original size:18 final size:19
Alignment explanation
Indices: 411644--411679 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
411634 TAAACTTTAA
*
411644 TTCAATTTATA-ATATAAC
1 TTCAATTGATACATATAAC
411662 TTCAATTGATACATATAA
1 TTCAATTGATACATATAA
411680 AAAAATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.42
Consensus pattern (19 bp):
TTCAATTGATACATATAAC
Found at i:415984 original size:18 final size:19
Alignment explanation
Indices: 415961--415998 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
415951 AATATTTTTA
*
415961 TTAACT-AATAATTATATT
1 TTAACTAAATAATTAAATT
415979 TTAACTAAATAATTAAATT
1 TTAACTAAATAATTAAATT
415998 T
1 T
415999 AAAGGGTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
TTAACTAAATAATTAAATT
Found at i:415999 original size:18 final size:18
Alignment explanation
Indices: 415961--416000 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
415951 AATATTTTTA
*
415961 TTAACTAATAATTATATT
1 TTAACTAATAATTATAAT
415979 TTAACTAAATAATTA-AAT
1 TTAACT-AATAATTATAAT
415997 TTAA
1 TTAA
416001 AGGGTTGACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAACTAATAATTATAAT
Found at i:429565 original size:2 final size:2
Alignment explanation
Indices: 429560--429589 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
429550 TAAAAAAATC
429560 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
429590 TGTTTTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:450206 original size:19 final size:18
Alignment explanation
Indices: 450172--450227 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
450162 GCAAATCGAT
450172 TTATTTTTTGTATACAATA
1 TTATTTTTT-TATACAATA
*
450191 TTCATTTTTTTGTAC-ATA
1 TT-ATTTTTTTATACAATA
450209 TTATATTTTTTATACAATA
1 TTAT-TTTTTTATACAATA
450228 AAATATCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 2 0.06
18 14 0.44
19 9 0.28
20 7 0.22
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (18 bp):
TTATTTTTTTATACAATA
Found at i:450318 original size:118 final size:117
Alignment explanation
Indices: 450097--450319 Score: 261
Period size: 118 Copynumber: 1.9 Consensus size: 117
450087 ATATTAGATT
* * * * *
450097 TTTTTTGATACAGTAGAATATCAAATTATCACACACCCATTTTAATCACCTTACAGACACAACTT
1 TTTTTTGATACAATAAAATATCAAATTATCACACACCCATATAAATCACCTCACAGACACAACTT
* * * *
450162 GCAAATCGATTTATTTTTTGTATACAATATTCATTTTTTTGTACATATTATA
66 ACAAATCGATTTATTTTTTGTATACAACATTAAATTTTTTGTACATATTATA
** *
450214 TTTTTT-ATACAATAAAATATCAAATTATCACACACACCCATATAAATCACCTCACAGGTATAAC
1 TTTTTTGATACAATAAAATATCAAATTAT--CACACACCCATATAAATCACCTCACAGACACAAC
* * **
450278 TTACGAATTGATTTATATTTTT-TATGTAACATTAAATTTTTT
64 TTACAAATCGATTTAT-TTTTTGTATACAACATTAAATTTTTT
450320 TGATATTATA
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
116 20 0.23
117 6 0.07
118 56 0.64
119 5 0.06
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.41
Consensus pattern (117 bp):
TTTTTTGATACAATAAAATATCAAATTATCACACACCCATATAAATCACCTCACAGACACAACTT
ACAAATCGATTTATTTTTTGTATACAACATTAAATTTTTTGTACATATTATA
Found at i:453559 original size:18 final size:17
Alignment explanation
Indices: 453538--453581 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
453528 GATCAATTCG
*
453538 AATAATTATCTTAATTAA
1 AATAATTAT-TTAATAAA
453556 AATAATTAATTTAATAAA
1 AATAATT-ATTTAATAAA
*
453574 AAAAATTA
1 AATAATTA
453582 AAATGACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 20 0.87
19 2 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAATTATTTAATAAA
Found at i:461617 original size:68 final size:68
Alignment explanation
Indices: 461508--461654 Score: 267
Period size: 68 Copynumber: 2.1 Consensus size: 68
461498 AGATGCCGGT
461508 CACTATCTTATCCTTCAAAGAAGGGAAGGCTCTTGAAACTACTAGGCTTCCCACAATCTGATGGA
1 CACTATCTTATCCTTCAAAGAAGGGAAGGCTCTTGAAACTACTAGGCTTCCCACAATCTGATGGA
461573 CCC
66 CCC
*
461576 CACTATCTTATCCTTCAAAGAAGGGAAGGCTCTTGAAACTACTAGGCTTCCCACAATCTGATGGG
1 CACTATCTTATCCTTCAAAGAAGGGAAGGCTCTTGAAACTACTAGGCTTCCCACAATCTGATGGA
461641 CCC
66 CCC
461644 CAGCCTATCTT
1 CA--CTATCTT
461655 CTGTTTCTCA
Statistics
Matches: 76, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
68 69 0.91
70 7 0.09
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (68 bp):
CACTATCTTATCCTTCAAAGAAGGGAAGGCTCTTGAAACTACTAGGCTTCCCACAATCTGATGGA
CCC
Found at i:466822 original size:29 final size:27
Alignment explanation
Indices: 466751--466822 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 27
466741 ATTTTTTTAC
*
466751 TTTTTTATTTAAAA-AATAAATAAATTA
1 TTTTTTA-TTAAAATAAAAAATAAATTA
466778 TTTATATATATT-AAATAAAAAATAAATTAA
1 TTT-T-T-TATTAAAATAAAAAATAAATT-A
466808 TCTTTTTATTAAAAT
1 T-TTTTTATTAAAAT
466823 TTTTATTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
27 3 0.08
28 8 0.22
29 19 0.51
30 5 0.14
31 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (27 bp):
TTTTTTATTAAAATAAAAAATAAATTA
Found at i:466862 original size:26 final size:24
Alignment explanation
Indices: 466779--466883 Score: 65
Period size: 24 Copynumber: 4.3 Consensus size: 24
466769 AATAAATTAT
* *
466779 TTATATATATTAAATAAAAAATAAA
1 TTATATAT-TTAATTAAAAAATATA
* * ** *
466804 TTA-ATCTTTTTATTAAAATTTTTA
1 TTATAT-ATTTAATTAAAAAATATA
466828 TTAT-T-TTTACTATTAAAAAATA-A
1 TTATATATTTA--ATTAAAAAATATA
*
466851 TCTATATATTTAATTATAAAATATA
1 T-TATATATTTAATTAAAAAATATA
466876 TTATATAT
1 TTATATAT
466884 ATATATGTGG
Statistics
Matches: 60, Mismatches: 12, Indels: 17
0.67 0.13 0.19
Matches are distributed among these distances:
22 3 0.05
23 2 0.03
24 44 0.73
25 7 0.12
26 4 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.50
Consensus pattern (24 bp):
TTATATATTTAATTAAAAAATATA
Found at i:478000 original size:17 final size:18
Alignment explanation
Indices: 477967--478000 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
477957 GTAATTAGTA
*
477967 GGTTTTAATTCAAAAAGT
1 GGTTTTAATTAAAAAAGT
477985 GGTTTTAA-TAAAAAAG
1 GGTTTTAATTAAAAAAG
478001 AAGATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (18 bp):
GGTTTTAATTAAAAAAGT
Found at i:478822 original size:31 final size:30
Alignment explanation
Indices: 478787--478877 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 30
478777 CCCAATAATA
* * *
478787 TAAATAAAAACCTTCGAATAATTTAATGACT
1 TAAATAAAAA-TTTCAAATAATTTAATAACT
* *
478818 TAAATAAATTATTTTAAATAATTTAATAACT
1 TAAATAAA-AATTTCAAATAATTTAATAACT
*
478849 TAAATAAAAATTTTCTAATAATTTAATAA
1 TAAATAAAAA-TTTCAAATAATTTAATAA
478878 TCATTTTGTA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
30 1 0.02
31 48 0.96
32 1 0.02
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (30 bp):
TAAATAAAAATTTCAAATAATTTAATAACT
Found at i:478853 original size:17 final size:16
Alignment explanation
Indices: 478803--478855 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
478793 AAAACCTTCG
478803 AATAATTTAATGACTTA
1 AATAATTTAAT-ACTTA
* *
478820 AATAAATT-AT-TTTA
1 AATAATTTAATACTTA
478834 AATAATTTAATAACTTA
1 AATAATTTAAT-ACTTA
478851 AATAA
1 AATAA
478856 AAATTTTCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 10 0.34
15 2 0.07
16 2 0.07
17 15 0.52
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (16 bp):
AATAATTTAATACTTA
Found at i:489725 original size:31 final size:29
Alignment explanation
Indices: 489670--489733 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 29
489660 ACCCTTTTTT
* *
489670 AATTTGGTACTTGTGTTTTGTTTTGATATTC
1 AATTTGGTACATGGGTTTTGTTTTG-T-TTC
489701 AATTTGGTACATGAGGTTTT-TTTTGTTTC
1 AATTTGGTACATG-GGTTTTGTTTTGTTTC
489730 AATT
1 AATT
489734 AAGCGTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 7 0.23
30 1 0.03
31 17 0.57
32 5 0.17
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (29 bp):
AATTTGGTACATGGGTTTTGTTTTGTTTC
Found at i:490004 original size:14 final size:15
Alignment explanation
Indices: 489975--490005 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
489965 TTAATAATGT
489975 AATTTTATTATTTTC
1 AATTTTATTATTTTC
489990 AATTTTATT-TTTTC
1 AATTTTATTATTTTC
490004 AA
1 AA
490006 CAAAGATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (15 bp):
AATTTTATTATTTTC
Found at i:492336 original size:27 final size:27
Alignment explanation
Indices: 492298--492357 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
492288 GTTGATCGAC
* *
492298 CATTGACGGTTGACCGTTGACTTTGAT
1 CATTGACCGTTGACCGTTGACTTTAAT
* **
492325 CGTTGACCGTTGATTGTTGACTTTAAT
1 CATTGACCGTTGACCGTTGACTTTAAT
492352 CATTGA
1 CATTGA
492358 GTTTTTTTGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (27 bp):
CATTGACCGTTGACCGTTGACTTTAAT
Found at i:493435 original size:3 final size:3
Alignment explanation
Indices: 493427--493475 Score: 80
Period size: 3 Copynumber: 16.0 Consensus size: 3
493417 GAACATTTTG
*
493427 ATT ATT ATT ATTT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
493473 ATT
1 ATT
493476 TTGGAATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:496744 original size:2 final size:2
Alignment explanation
Indices: 496737--496762 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
496727 TGTAAAATCG
496737 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
496763 CCTATAAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:500497 original size:33 final size:33
Alignment explanation
Indices: 500450--500537 Score: 108
Period size: 33 Copynumber: 2.7 Consensus size: 33
500440 AGGGTGCTGT
* *
500450 TGAGCAGGTAGTGGGTACTGCGGAT-GCTGCA-GC
1 TGAGCAGGTGGTGGGTATTGCGG-TGGCTG-ATGC
**
500483 TGAGTTGGTGGTGGGTATTGCGGTGGCTGATGC
1 TGAGCAGGTGGTGGGTATTGCGGTGGCTGATGC
500516 TGAGCAGGTGGTGGGTATTGCG
1 TGAGCAGGTGGTGGGTATTGCG
500538 ATGGTTGCTG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
32 2 0.04
33 45 0.96
ACGTcount: A:0.14, C:0.12, G:0.47, T:0.27
Consensus pattern (33 bp):
TGAGCAGGTGGTGGGTATTGCGGTGGCTGATGC
Found at i:503472 original size:31 final size:31
Alignment explanation
Indices: 503434--503502 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
503424 TTATAAAATG
*
503434 ATCACTAAATTATTCAAAAGCTTTTGTTTAA
1 ATCACTAAATTATTCAAAAGCTTTTATTTAA
* * *
503465 ATTACTAAATTATTCCAAAGTTTTTATTTAA
1 ATCACTAAATTATTCAAAAGCTTTTATTTAA
503496 ATCACTA
1 ATCACTA
503503 GGTTGTTAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.43
Consensus pattern (31 bp):
ATCACTAAATTATTCAAAAGCTTTTATTTAA
Found at i:507421 original size:24 final size:22
Alignment explanation
Indices: 507367--507429 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 22
507357 CTATATATTC
507367 TTTAGAATTTTTTAAAAAAAAA
1 TTTAGAATTTTTTAAAAAAAAA
*
507389 TCATA-AATTTTTTAAAATATAAAA
1 T-TTAGAATTTTTTAAAA-A-AAAA
507413 TTTAGAATTTTTATAAA
1 TTTAGAATTTTT-TAAA
507430 TATTTTGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
22 13 0.38
23 5 0.15
24 12 0.35
25 4 0.12
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (22 bp):
TTTAGAATTTTTTAAAAAAAAA
Found at i:507430 original size:24 final size:23
Alignment explanation
Indices: 507367--507432 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 23
507357 CTATATATTC
*
507367 TTTAGAATTTTTTAAA-AAAAAA
1 TTTAGAATTTTTTAAATATAAAA
*
507389 TCATA-AATTTTTTAAAATATAAAA
1 T-TTAGAATTTTTT-AAATATAAAA
507413 TTTAGAATTTTTATAAATAT
1 TTTAGAATTTTT-TAAATAT
507433 TTTGATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 9 0.25
23 7 0.19
24 19 0.53
25 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (23 bp):
TTTAGAATTTTTTAAATATAAAA
Found at i:510412 original size:2 final size:2
Alignment explanation
Indices: 510399--510450 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
510389 AAAATAATAC
*
510399 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
510441 AT AT AT AT AT
1 AT AT AT AT AT
510451 TAAAATAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:510681 original size:13 final size:13
Alignment explanation
Indices: 510663--510688 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
510653 ATCATTCAAC
510663 TATGAAAAATTAT
1 TATGAAAAATTAT
510676 TATGAAAAATTAT
1 TATGAAAAATTAT
510689 AAAATGGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
TATGAAAAATTAT
Found at i:514383 original size:16 final size:16
Alignment explanation
Indices: 514362--514398 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
514352 TATCATTTAT
514362 TAGGTGTAATAATATG
1 TAGGTGTAATAATATG
514378 TAGGTGTAATAATATG
1 TAGGTGTAATAATATG
514394 TAGGT
1 TAGGT
514399 AGGGATGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (16 bp):
TAGGTGTAATAATATG
Found at i:519918 original size:21 final size:22
Alignment explanation
Indices: 519888--519931 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
519878 CTTATTTACT
*
519888 TGTATCCG-AATTTTTTTTGAA
1 TGTATCCGAAACTTTTTTTGAA
*
519909 TGTATTCGAAACTTTTTTTGAA
1 TGTATCCGAAACTTTTTTTGAA
519931 T
1 T
519932 AAATTGTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.14, T:0.52
Consensus pattern (22 bp):
TGTATCCGAAACTTTTTTTGAA
Found at i:521168 original size:241 final size:239
Alignment explanation
Indices: 520733--521187 Score: 752
Period size: 241 Copynumber: 1.9 Consensus size: 239
520723 AAATTCTCAC
* *
520733 CAAAAAATCAATCAAATTCTTCAATTATAGATTTAAAATCAAAAGAAACAATGAGACAATAAAAT
1 CAAAAAACCAATCAAATTCCTCAATTATAGATTTAAAATCAAAAGAAACAATGAGACAATAAAAT
** *
520798 TACCCAAAAAAATGTAGAAATTCAAGCAATGAACAATCCAAAAACTCTAAAAACAAATAACAGTT
66 TACCCAAAAAAATGTAGAAATTCAAGCAATGAACAATAAAAAAACTCTAAAAACAAATAACAGTA
*
520863 TAATAAAGTCCATCTCAAGTTTATATAGTAAAAAAAAGCTCACCTTTTGTTTTTCCAAAGAGAAA
131 TAATAAAGTCCATCTCAAGTTTATACAGTAAAAAAAAGCTCACCTTTTGTTTTTCCAAAGAG--A
520928 AAAAATCAAAGAGACAACAAGCTCTCCACGATAATGGAGCAATTCT
194 AAAAATCAAAGAGACAACAAGCTCTCCACGATAATGGAGCAATTCT
* *
520974 CAAAAAAGCCAATCAAATTCCTCAATTATAGATTTAAAATCAAAAGAGACAATGAGACGATAAAA
1 CAAAAAA-CCAATCAAATTCCTCAATTATAGATTTAAAATCAAAAGAAACAATGAGACAATAAAA
* *
521039 TTACCCAAAAAAAATGTAGAAATTCAAGCAATGAACAATAAAAAAACT-TTAAAA-AAATGACAG
65 TTACCC-AAAAAAATGTAGAAATTCAAGCAATGAACAATAAAAAAACTCTAAAAACAAATAACAG
* *
521102 TATAATAAAGTCCATCTCAAGTTTATACGGTATAAAAAAGCTCACCTTTTGTTTTTCCAAAGAGA
129 TATAATAAAGTCCATCTCAAGTTTATACAGTAAAAAAAAGCTCACCTTTTGTTTTTCCAAAGAGA
521167 AAAAATCAAAGAGACAACAAG
194 AAAAATCAAAGAGACAACAAG
521188 TTATCCACAA
Statistics
Matches: 200, Mismatches: 12, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
239 22 0.11
241 75 0.38
242 64 0.32
243 39 0.19
ACGTcount: A:0.51, C:0.16, G:0.10, T:0.23
Consensus pattern (239 bp):
CAAAAAACCAATCAAATTCCTCAATTATAGATTTAAAATCAAAAGAAACAATGAGACAATAAAAT
TACCCAAAAAAATGTAGAAATTCAAGCAATGAACAATAAAAAAACTCTAAAAACAAATAACAGTA
TAATAAAGTCCATCTCAAGTTTATACAGTAAAAAAAAGCTCACCTTTTGTTTTTCCAAAGAGAAA
AAATCAAAGAGACAACAAGCTCTCCACGATAATGGAGCAATTCT
Found at i:521561 original size:11 final size:11
Alignment explanation
Indices: 521545--521576 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
521535 ATTTTGATTC
521545 TGATATCATTA
1 TGATATCATTA
*
521556 TGATATCATCA
1 TGATATCATTA
521567 TGATATCATT
1 TGATATCATT
521577 TATGTTACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.44
Consensus pattern (11 bp):
TGATATCATTA
Found at i:522571 original size:19 final size:19
Alignment explanation
Indices: 522547--522585 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
522537 TTTTTTATGA
522547 AAAATTTGACTAA-ATTGAT
1 AAAATTTGA-TAACATTGAT
*
522566 AAAATTTTATAACATTGAT
1 AAAATTTGATAACATTGAT
522585 A
1 A
522586 TGATAGCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (19 bp):
AAAATTTGATAACATTGAT
Found at i:529135 original size:35 final size:35
Alignment explanation
Indices: 529096--529169 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
529086 GTACAAAAAC
*
529096 CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG
1 CATGCATTTCCATGTGTTTTAGCTTTTGGAATTGG
529131 CATGCATTTCCATGTGTTTTAGCTTTTGGAATTGG
1 CATGCATTTCCATGTGTTTTAGCTTTTGGAATTGG
529166 CATG
1 CATG
529170 TATCTTGTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.16, C:0.15, G:0.23, T:0.46
Consensus pattern (35 bp):
CATGCATTTCCATGTGTTTTAGCTTTTGGAATTGG
Found at i:529286 original size:4 final size:4
Alignment explanation
Indices: 529277--529311 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
529267 TAATTAGTGA
*
529277 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
529312 TGAAGCGCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:530092 original size:26 final size:26
Alignment explanation
Indices: 530063--530116 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
530053 ATTTGAGAAT
530063 ATGAGTTTGTAATTGTCTTAATCTTA
1 ATGAGTTTGTAATTGTCTTAATCTTA
530089 ATGAGTTTGTAATTGTCTTAATCTTA
1 ATGAGTTTGTAATTGTCTTAATCTTA
530115 AT
1 AT
530117 CATGAGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (26 bp):
ATGAGTTTGTAATTGTCTTAATCTTA
Found at i:532326 original size:1 final size:1
Alignment explanation
Indices: 532320--532344 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
532310 CCATGCAAAT
532320 CCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCC
532345 ACAAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:543307 original size:127 final size:127
Alignment explanation
Indices: 542993--543372 Score: 604
Period size: 127 Copynumber: 3.0 Consensus size: 127
542983 TCACATATAA
542993 TTGTCTTGTTATTTCATCAACAATGCCAATTTTTAATAGTAGAAATGAATGAAATTTTTAATAGA
1 TTGTCTTGTTATTTCATCAACAATGCCAATTTTTAATAGTAGAAATGAATGAAATTTTTAATAGA
* * * *
543058 AATGATCAATTTACTTTTTGATCCAAAATAGAGAAACTAATTTA-CCAAATTTTAAGTAAAT
66 AATGATCAATTTGCTCTTTGATCCAAAATAGAAAAACTAATTTACCCAATTTTTAAGTAAAT
* *
543119 TTGTCTTGTTATTTCATCAACAATACCAATTTTTAATAGTAGAAATGAATGAAATTTTTAATAAA
1 TTGTCTTGTTATTTCATCAACAATGCCAATTTTTAATAGTAGAAATGAATGAAATTTTTAATAGA
*
543184 AATGATCAATTTGCTCTTTGATCC-AAA-AGAACCAAACTAATTTACCCATTTTTTAAGTAAAT
66 AATGATCAATTTGCTCTTTGATCCAAAATAGAA--AAACTAATTTACCCAATTTTTAAGTAAAT
543246 TTGTCTTGTTATTTCATCAACAATGCCAATTTTTAATAGTAGAAATGAATGAAATTTTTAATAGA
1 TTGTCTTGTTATTTCATCAACAATGCCAATTTTTAATAGTAGAAATGAATGAAATTTTTAATAGA
* * * * * *
543311 AATGATCAATTTGTTCTTTAATCCAAAATATAAAAATTTATTTACCCACTTTTTAAGTAAAT
66 AATGATCAATTTGCTCTTTGATCCAAAATAGAAAAACTAATTTACCCAATTTTTAAGTAAAT
543373 AAGATAAAAT
Statistics
Matches: 234, Mismatches: 15, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
124 3 0.01
125 3 0.01
126 96 0.41
127 126 0.54
128 3 0.01
129 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (127 bp):
TTGTCTTGTTATTTCATCAACAATGCCAATTTTTAATAGTAGAAATGAATGAAATTTTTAATAGA
AATGATCAATTTGCTCTTTGATCCAAAATAGAAAAACTAATTTACCCAATTTTTAAGTAAAT
Found at i:546737 original size:28 final size:28
Alignment explanation
Indices: 546697--546754 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
546687 AAGAAACTTA
* * *
546697 ATGGGAAGAAGATATTGGAATCAAAGAT
1 ATGGGAAGAAGATATCGGAATAAAAAAT
546725 ATGGGAAGAAGATATCGGAATAAAAAAT
1 ATGGGAAGAAGATATCGGAATAAAAAAT
546753 AT
1 AT
546755 TGTATCTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.50, C:0.03, G:0.26, T:0.21
Consensus pattern (28 bp):
ATGGGAAGAAGATATCGGAATAAAAAAT
Found at i:546738 original size:13 final size:13
Alignment explanation
Indices: 546697--546744 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
546687 AAGAAACTTA
546697 ATGGGAAGAAGAT
1 ATGGGAAGAAGAT
* *
546710 ATTGGAATCAAAGAT
1 ATGGGAA--GAAGAT
546725 ATGGGAAGAAGAT
1 ATGGGAAGAAGAT
*
546738 ATCGGAA
1 ATGGGAA
546745 TAAAAAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
13 17 0.61
15 11 0.39
ACGTcount: A:0.46, C:0.04, G:0.31, T:0.19
Consensus pattern (13 bp):
ATGGGAAGAAGAT
Found at i:547931 original size:104 final size:103
Alignment explanation
Indices: 547751--547959 Score: 364
Period size: 104 Copynumber: 2.0 Consensus size: 103
547741 TTTTTAAGTC
*
547751 TCAAAGAAACTTTGATCCCTTTGTATTCTCCGCTCATATCCCAAATCCCCATACCCCTTCTGTAA
1 TCAAAGAAACTTTGATCCCTTTGTATTCTCCGCTCATATCCCAAATCCCCATACCCCTTCTATAA
*
547816 GCTCTTTATCCCCTTTTTCCTTCATCCTTACTTATATGA
66 GCTCTCTATCCCC-TTTTCCTTCATCCTTACTTATATGA
* *
547855 TCAAAGAAACTTTGATCCCTTTGTATTCTCCGCTCATATCCCAAATCCTCATACCCCTTTTATAA
1 TCAAAGAAACTTTGATCCCTTTGTATTCTCCGCTCATATCCCAAATCCCCATACCCCTTCTATAA
*
547920 GCTCTCTATCCCCTTTTCCTTCATCTTTACTTATATGA
66 GCTCTCTATCCCCTTTTCCTTCATCCTTACTTATATGA
547958 TC
1 TC
547960 TGTTTTTCTG
Statistics
Matches: 100, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
103 26 0.26
104 74 0.74
ACGTcount: A:0.22, C:0.32, G:0.06, T:0.39
Consensus pattern (103 bp):
TCAAAGAAACTTTGATCCCTTTGTATTCTCCGCTCATATCCCAAATCCCCATACCCCTTCTATAA
GCTCTCTATCCCCTTTTCCTTCATCCTTACTTATATGA
Found at i:550052 original size:12 final size:13
Alignment explanation
Indices: 550034--550067 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
550024 GCTTGTGTTT
550034 TATTTTTTATAAA
1 TATTTTTTATAAA
*
550047 -ATTTTTAATAAA
1 TATTTTTTATAAA
550059 TATTTTTTA
1 TATTTTTTA
550068 ATAATTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTTTTTATAAA
Found at i:550067 original size:14 final size:14
Alignment explanation
Indices: 550034--550071 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
550024 GCTTGTGTTT
550034 TATTTTTT-ATAAA
1 TATTTTTTAATAAA
550047 -A-TTTTTAATAAA
1 TATTTTTTAATAAA
550059 TATTTTTTAATAA
1 TATTTTTTAATAA
550072 TTTCATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 5 0.23
12 6 0.27
13 1 0.05
14 10 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TATTTTTTAATAAA
Found at i:557162 original size:31 final size:33
Alignment explanation
Indices: 557102--557167 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 33
557092 TGAGGGTTTA
* * * *
557102 TTTTTTTTTATTTTTATCGTGTGAGATTTGGAC
1 TTTTTTTTAATTTTTATAGTGTGAAATTTGAAC
557135 TTTTTTTTAATTTTTA-AG-GTGAAATTTGAAC
1 TTTTTTTTAATTTTTATAGTGTGAAATTTGAAC
557166 TT
1 TT
557168 AAGAGATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 13 0.45
32 1 0.03
33 15 0.52
ACGTcount: A:0.21, C:0.05, G:0.15, T:0.59
Consensus pattern (33 bp):
TTTTTTTTAATTTTTATAGTGTGAAATTTGAAC
Found at i:558399 original size:3 final size:3
Alignment explanation
Indices: 558391--558432 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
558381 CTTAAAAGTG
*
558391 CTT CTT CTT CTT CTT CTT CTT CAT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
558433 TTTGTATTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:566177 original size:19 final size:18
Alignment explanation
Indices: 566135--566177 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
566125 AATTATTTTT
*
566135 ATTTTTAATTTTTTAAAA
1 ATTTATAATTTTTTAAAA
* *
566153 ACTTATAATTTTATTAATA
1 ATTTATAATTTT-TTAAAA
566172 ATTTAT
1 ATTTAT
566178 TTAATTGAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTATAATTTTTTAAAA
Found at i:571335 original size:16 final size:17
Alignment explanation
Indices: 571314--571348 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
571304 ATAAACATTA
571314 TAATTAATT-TAAATAT
1 TAATTAATTATAAATAT
*
571330 TAATTAATTATAATTAT
1 TAATTAATTATAAATAT
571347 TA
1 TA
571349 TAAATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATTAATTATAAATAT
Found at i:571340 original size:26 final size:26
Alignment explanation
Indices: 571310--571361 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
571300 ATAAATAAAC
571310 ATTATAATTAATT-TAAATATTA-ATTA
1 ATTATAATT-ATTATAAAT-TTATATTA
571336 ATTATAATTATTATAAATTTATATTA
1 ATTATAATTATTATAAATTTATATTA
571362 TCACAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
ATTATAATTATTATAAATTTATATTA
Found at i:573569 original size:31 final size:30
Alignment explanation
Indices: 573494--573579 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 30
573484 TGGTGAGGGT
*
573494 TAAATTTATTAAATTTTTTAAA-ATTAGAAC
1 TAAATTTATT-AATTTTTTAAATATTAAAAC
* * * *
573524 TAAAATAATAAATTTTGTAAATATTGAAAAC
1 TAAATTTATTAATTTTTTAAATATT-AAAAC
*
573555 TAAATTTATTAATTTTTTTAATATT
1 TAAATTTATTAATTTTTTAAATATT
573580 TAATATCAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
29 10 0.23
30 10 0.23
31 24 0.55
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (30 bp):
TAAATTTATTAATTTTTTAAATATTAAAAC
Found at i:578759 original size:2 final size:2
Alignment explanation
Indices: 578752--578796 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
578742 CGAAAAACAA
*
578752 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
578793 AT AT
1 AT AT
578797 TGAAAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:585017 original size:2 final size:2
Alignment explanation
Indices: 585010--585056 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
585000 ATGAAACCAA
585010 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
585052 AG AG A
1 AG AG A
585057 ACAGTAACTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:585591 original size:31 final size:31
Alignment explanation
Indices: 585547--585635 Score: 101
Period size: 31 Copynumber: 2.8 Consensus size: 31
585537 TACTTAAATT
* *
585547 TTTTTCTCTAATTTGATA-TTCAAATTTGACAC
1 TTTTT-TCTAATTTGATACTT-AAACTTGACAA
585579 TTTTTTCTAATTT-AGTACTTAAACTTGACAA
1 TTTTTTCTAATTTGA-TACTTAAACTTGACAA
* *
585610 TTTTTTTTAAGTTGATACTTAAACTT
1 TTTTTTCTAATTTGATACTTAAACTT
585636 TTTGAGATCT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
30 1 0.02
31 41 0.82
32 8 0.16
ACGTcount: A:0.29, C:0.12, G:0.07, T:0.52
Consensus pattern (31 bp):
TTTTTTCTAATTTGATACTTAAACTTGACAA
Found at i:586021 original size:60 final size:59
Alignment explanation
Indices: 585835--586025 Score: 224
Period size: 59 Copynumber: 3.2 Consensus size: 59
585825 ATTTAATAAA
* * * *
585835 TTTAGGTATCAAATTGAATCTAAAAAAAA-CTTAGGTACCAAATTAGAAAAAATGTCAAG
1 TTTAGGTACCAAATTGGATC-AAAAAAAAGTTTAGGTACCAAATTAGGAAAAATGTCAAG
* * * * *
585894 TTCAGGTACCAAATT-GAGTCCAAAAAAGGTTTAGGTACTAAAATAGGAAAAATGTCAAG
1 TTTAGGTACCAAATTGGA-TCAAAAAAAAGTTTAGGTACCAAATTAGGAAAAATGTCAAG
* ** *
585953 TTTAGGTACCAACTTGGATCAAAAAAAAGTTTAGACACCAAATTAGGAAAAAGTGTTAAG
1 TTTAGGTACCAAATTGGATCAAAAAAAAGTTTAGGTACCAAATTAGGAAAAA-TGTCAAG
586013 TTTAGGTACCAAA
1 TTTAGGTACCAAA
586026 ATTTATATTA
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
58 7 0.06
59 82 0.75
60 20 0.18
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.26
Consensus pattern (59 bp):
TTTAGGTACCAAATTGGATCAAAAAAAAGTTTAGGTACCAAATTAGGAAAAATGTCAAG
Found at i:601406 original size:21 final size:21
Alignment explanation
Indices: 601368--601409 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
601358 AAATAAATAA
*
601368 TTTAAAAATATAATTAAAATG
1 TTTAAAAATACAATTAAAATG
601389 TTTAAAAAT-CAATATAAAATG
1 TTTAAAAATACAAT-TAAAATG
601410 GTGATCATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (21 bp):
TTTAAAAATACAATTAAAATG
Found at i:617796 original size:14 final size:14
Alignment explanation
Indices: 617779--617813 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
617769 TGTAAAAAAA
*
617779 TTGTTGTTTTACTG
1 TTGTTGTTTCACTG
617793 TTGTTGTTTCACTG
1 TTGTTGTTTCACTG
617807 TT-TTGTT
1 TTGTTGTT
617814 ATCATTTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.06, C:0.09, G:0.20, T:0.66
Consensus pattern (14 bp):
TTGTTGTTTCACTG
Found at i:620916 original size:17 final size:17
Alignment explanation
Indices: 620894--620954 Score: 77
Period size: 17 Copynumber: 3.4 Consensus size: 17
620884 AAATTGATTC
620894 AAATTTATTTTAAATTT
1 AAATTTATTTTAAATTT
620911 AAATTTATCTTTTTAAATTT
1 AAATTTA---TTTTAAATTT
**
620931 AAATTTGCTTTAAATTT
1 AAATTTATTTTAAATTT
620948 AAATTTA
1 AAATTTA
620955 AACAAATTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
17 22 0.58
20 16 0.42
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (17 bp):
AAATTTATTTTAAATTT
Found at i:620926 original size:20 final size:19
Alignment explanation
Indices: 620901--620954 Score: 76
Period size: 20 Copynumber: 2.9 Consensus size: 19
620891 TTCAAATTTA
*
620901 TTTTAAATTTAAATTTATC
1 TTTTAAATTTAAATTTAGC
620920 TTTTTAAATTTAAATTT-GC
1 -TTTTAAATTTAAATTTAGC
620939 -TTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
620955 AACAAATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 15 0.47
19 1 0.03
20 16 0.50
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTTAAATTTAAATTTAGC
Found at i:622653 original size:23 final size:22
Alignment explanation
Indices: 622551--622704 Score: 168
Period size: 23 Copynumber: 6.7 Consensus size: 22
622541 CGAAGTACTT
*
622551 AACAGTAAGCACACAAGTGCTGGGGA
1 AACAGTAGGCACACAAGTGC----GA
*
622577 AACAGTAAGCACACACAGTGC-A
1 AACAGTAGGCACACA-AGTGCGA
*
622599 ATCAGTAGGCACACACAGTGC-A
1 AACAGTAGGCACACA-AGTGCGA
*
622621 ATCAGTAGGCACACGAAGTGCGA
1 AACAGTAGGCACAC-AAGTGCGA
622644 AACAGTAGGCACACAAAGTGCGA
1 AACAGTAGGCACAC-AAGTGCGA
622667 AACAGTAGGCACACAAAGTGCGA
1 AACAGTAGGCACAC-AAGTGCGA
*
622690 AACAGTAAGCACACA
1 AACAGTAGGCACACA
622705 CAGTACTGAA
Statistics
Matches: 120, Mismatches: 5, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
22 41 0.34
23 59 0.49
26 15 0.12
27 5 0.04
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.10
Consensus pattern (22 bp):
AACAGTAGGCACACAAGTGCGA
Found at i:624392 original size:3 final size:3
Alignment explanation
Indices: 624386--624414 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
624376 ACCTTTTAAC
624386 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
624415 ATGTTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:625705 original size:29 final size:29
Alignment explanation
Indices: 625665--625846 Score: 190
Period size: 29 Copynumber: 6.2 Consensus size: 29
625655 AAACTTCTTC
*
625665 AAAATTACATTTT-CCCCCTAAAACTTTCA
1 AAAATTACATTTTGCCCCC-AAAACTTCCA
* *
625694 AAAATCACATTTTGTCCCCAAAACTTCCA
1 AAAATTACATTTTGCCCCCAAAACTTCCA
*
625723 AAAATTACATTTTGACCCCAAAACTTCCA
1 AAAATTACATTTTGCCCCCAAAACTTCCA
* *
625752 CAAATTACATTTTTACCCCC-AAACTTCCA
1 AAAATTACA-TTTTGCCCCCAAAACTTCCA
* * *
625781 AAAATTCCATTTTGAACCTCAAAACTTCCA
1 AAAATTACATTTTG-CCCCCAAAACTTCCA
* * * *
625811 AAAATTCCATTTTTACCCTC-GAACTTCCA
1 AAAATTACA-TTTTGCCCCCAAAACTTCCA
625840 AAAATTA
1 AAAATTA
625847 TCATGTTATC
Statistics
Matches: 131, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
28 4 0.03
29 89 0.68
30 34 0.26
31 4 0.03
ACGTcount: A:0.38, C:0.29, G:0.02, T:0.31
Consensus pattern (29 bp):
AAAATTACATTTTGCCCCCAAAACTTCCA
Found at i:625816 original size:59 final size:58
Alignment explanation
Indices: 625665--625846 Score: 233
Period size: 58 Copynumber: 3.1 Consensus size: 58
625655 AAACTTCTTC
* * * *
625665 AAAATTACATTTT-CCCCCTAAAACTTTCAAAAATCACATTTTGT-CCCCAAAACTTCCA
1 AAAATTACATTTTGACCCC-AAAACTTCCAAAAATTACATTTT-TACCCCCAAACTTCCA
*
625723 AAAATTACATTTTGACCCCAAAACTTCCACAAATTACATTTTTACCCCCAAACTTCCA
1 AAAATTACATTTTGACCCCAAAACTTCCAAAAATTACATTTTTACCCCCAAACTTCCA
* * * * *
625781 AAAATTCCATTTTGAACCTCAAAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCA
1 AAAATTACATTTTG-ACCCCAAAACTTCCAAAAATTACATTTTTACCCCCAAACTTCCA
625840 AAAATTA
1 AAAATTA
625847 TCATGTTATC
Statistics
Matches: 109, Mismatches: 12, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
57 1 0.01
58 59 0.54
59 49 0.45
ACGTcount: A:0.38, C:0.29, G:0.02, T:0.31
Consensus pattern (58 bp):
AAAATTACATTTTGACCCCAAAACTTCCAAAAATTACATTTTTACCCCCAAACTTCCA
Found at i:625881 original size:88 final size:88
Alignment explanation
Indices: 625665--625859 Score: 204
Period size: 88 Copynumber: 2.2 Consensus size: 88
625655 AAACTTCTTC
* * * *
625665 AAAATTACATTT-T-CCCCCTAAAACTTTCAAAAA-TCACATTTTG-TCCCCAAAACTTCCAAAA
1 AAAATTACATTTATACCCCC--AAACATCCAAAAATTC-CATTTTGAACCTCAAAACTTCCAAAA
625726 ATTACATTTTGACCCCAAAACTTCCA
63 ATTACATTTTGACCCCAAAACTTCCA
* * *
625752 CAAATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTGAACCTCAAAACTTCCAAAAATT
1 AAAATTACATTTATACCCCCAAACATCCAAAAATTCCATTTTGAACCTCAAAACTTCCAAAAATT
* * *
625817 CCATTTTTACCCTC-GAACTTCCA
66 ACATTTTGACCC-CAAAACTTCCA
625840 AAAATTATCATGTTAT-CCCC
1 AAAATTA-CAT-TTATACCCC
625860 GAAAATCTAA
Statistics
Matches: 92, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
87 30 0.33
88 46 0.50
89 13 0.14
90 3 0.03
ACGTcount: A:0.37, C:0.29, G:0.03, T:0.31
Consensus pattern (88 bp):
AAAATTACATTTATACCCCCAAACATCCAAAAATTCCATTTTGAACCTCAAAACTTCCAAAAATT
ACATTTTGACCCCAAAACTTCCA
Found at i:632977 original size:2 final size:2
Alignment explanation
Indices: 632965--632997 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
632955 CACTAGTATT
*
632965 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
632998 TATTTAGAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:633316 original size:3 final size:3
Alignment explanation
Indices: 633308--633332 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
633298 ATACTTTTTA
633308 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
633333 CACTGTGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:633757 original size:21 final size:21
Alignment explanation
Indices: 633731--633774 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
633721 TAATTAAAAT
633731 TTAATA-GTATTAAATAAATTA
1 TTAATATGTATT-AATAAATTA
* *
633752 TTAATATTTATTTATAAATTA
1 TTAATATGTATTAATAAATTA
633773 TT
1 TT
633775 CACAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
TTAATATGTATTAATAAATTA
Found at i:643264 original size:22 final size:22
Alignment explanation
Indices: 643208--643305 Score: 124
Period size: 22 Copynumber: 4.3 Consensus size: 22
643198 TTGCGCGCCC
* *
643208 TCTGTTCAGTACTATGTGTGCT
1 TCTGTTCAGCACTGTGTGTGCT
643230 TCTGTTTCCTCAGCACTGTGTGTGCT
1 TCTG--T--TCAGCACTGTGTGTGCT
643256 TCTGTTCAGCACTGTGTGTGCT
1 TCTGTTCAGCACTGTGTGTGCT
* *
643278 TCTGTTTAGCATTGTGTGTGCT
1 TCTGTTCAGCACTGTGTGTGCT
643300 TCTGTT
1 TCTGTT
643306 AAGTACTTTG
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
22 47 0.69
24 2 0.03
26 19 0.28
ACGTcount: A:0.09, C:0.20, G:0.24, T:0.46
Consensus pattern (22 bp):
TCTGTTCAGCACTGTGTGTGCT
Found at i:643279 original size:48 final size:44
Alignment explanation
Indices: 643208--643305 Score: 133
Period size: 48 Copynumber: 2.1 Consensus size: 44
643198 TTGCGCGCCC
*
643208 TCTGTTCAGTACTATGTGTGCTTCTGTTTCCTCAGCACTGTGTGTGCT
1 TCTGTTCAGCACTATGTGTGCTTCTG-TT--T-AGCACTGTGTGTGCT
* *
643256 TCTGTTCAGCACTGTGTGTGCTTCTGTTTAGCATTGTGTGTGCT
1 TCTGTTCAGCACTATGTGTGCTTCTGTTTAGCACTGTGTGTGCT
643300 TCTGTT
1 TCTGTT
643306 AAGTACTTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
44 20 0.43
45 1 0.02
47 2 0.04
48 24 0.51
ACGTcount: A:0.09, C:0.20, G:0.24, T:0.46
Consensus pattern (44 bp):
TCTGTTCAGCACTATGTGTGCTTCTGTTTAGCACTGTGTGTGCT
Found at i:650335 original size:9 final size:8
Alignment explanation
Indices: 650308--650337 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
650298 AATTAAGCTC
650308 ATTTTATT
1 ATTTTATT
650316 ATTTTATT
1 ATTTTATT
650324 ATTTTGATT
1 ATTTT-ATT
650333 ATTTT
1 ATTTT
650338 TATACTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (8 bp):
ATTTTATT
Found at i:668596 original size:4 final size:4
Alignment explanation
Indices: 668587--668622 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
668577 GCTTATTGCA
668587 GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT
1 GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT
668623 CTCTCTGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (4 bp):
GGTT
Found at i:672507 original size:25 final size:26
Alignment explanation
Indices: 672466--672556 Score: 71
Period size: 31 Copynumber: 3.4 Consensus size: 26
672456 AGATATTAAA
*
672466 TTTT-AATAACAAAAATAGA-TAATT
1 TTTTAAATAACAAAAATAAATTAATT
*
672490 TTTTAAATAA-AAATAATAAATTTATT
1 TTTTAAATAACAAA-AATAAATTAATT
* *
672516 TTTTAATGTAATGAATAAAAATTAATTAATT
1 TTTT-A---AAT-AACAAAAATAAATTAATT
672547 TTTTAAATAA
1 TTTTAAATAA
672557 ATAGAGTAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
24 7 0.13
25 10 0.19
26 10 0.19
27 4 0.07
30 4 0.07
31 16 0.30
32 3 0.06
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (26 bp):
TTTTAAATAACAAAAATAAATTAATT
Found at i:675949 original size:108 final size:108
Alignment explanation
Indices: 675760--675973 Score: 410
Period size: 108 Copynumber: 2.0 Consensus size: 108
675750 CATAATTAAA
675760 CACTAAACCTACTATTCTCTCTGCTCGCTCTCTCAATTACTCCCGTGACCTTTCATCCATCTTTA
1 CACTAAACCTACTATTCTCTCTGCTCGCTCTCTCAATTACTCCCGTGACCTTTCATCCATCTTTA
*
675825 AATATTTCAGCTCTTTGCGCCACCAGAGTGAACCGCCGTCAAG
66 AATATTTCAACTCTTTGCGCCACCAGAGTGAACCGCCGTCAAG
*
675868 CACTAAACCTACTATTTTCTCTGCTCGCTCTCTCAATTACTCCCGTGACCTTTCATCCATCTTTA
1 CACTAAACCTACTATTCTCTCTGCTCGCTCTCTCAATTACTCCCGTGACCTTTCATCCATCTTTA
675933 AATATTTCAACTCTTTGCGCCACCAGAGTGAACCGCCGTCA
66 AATATTTCAACTCTTTGCGCCACCAGAGTGAACCGCCGTCA
675974 GTACCATCGT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 104 1.00
ACGTcount: A:0.22, C:0.34, G:0.11, T:0.32
Consensus pattern (108 bp):
CACTAAACCTACTATTCTCTCTGCTCGCTCTCTCAATTACTCCCGTGACCTTTCATCCATCTTTA
AATATTTCAACTCTTTGCGCCACCAGAGTGAACCGCCGTCAAG
Found at i:693576 original size:180 final size:175
Alignment explanation
Indices: 693337--693705 Score: 474
Period size: 180 Copynumber: 2.1 Consensus size: 175
693327 TGCATGATCG
* **
693337 ACACCCCTTTTTAATCTA-ATAAAAAAATCAAATTTTTTTGTGTTGGCCATGTAATGGTCGACAC
1 ACACCCCTTTTT--TC-AGATAAAAAAATCAAATTTTTTAGTGTTGGCCATACAATGGTCGACA-
* * * *
693401 TCCCTTTTTGTCAGATAAAAAA-TTCAA-TTTTTTGGTGTTGGCCATGCAATGGTCGACACCCCT
62 -CCCTTTTTGTCAGATAAAAAATTTAAATTTTTTTGGTATTGGCAATGCAATGATCGACACCCCT
* *
693464 ATTTATCTGATAAAAAAATCAAATTTTTGGGTGTTGGCTATGCAATGGCCG
126 ATTTATCTGATAAAAAAATC-AATTTTTGGGTGTTGGCCATGCAATGGCCA
*
693515 ACACTCCCTTTTTTCAGATAAAAAAATTTCAAAATTTTTTAGTGTTGGCCATACCATGGTCGACA
1 ACAC-CCCTTTTTTCAGATAAAAAAA--TC-AAATTTTTTAGTGTTGGCCATACAATGGTCGACA
* * * *
693580 CCCTTTTTGTCAGATAAAAAATTTAAATTTTTTTTGTATTGGCAATGCCATGATCGACGCCCCTT
62 CCCTTTTTGTCAGATAAAAAATTTAAATTTTTTTGGTATTGGCAATGCAATGATCGACACCCCTA
* **
693645 TTTATCTGGTAAAAAAATCAATTTTTTTGTGTTGGCCATGCAATGGCCA
127 TTTATCTGATAAAAAAATCAATTTTTGGGTGTTGGCCATGCAATGGCCA
693694 ACACCCCTTTTT
1 ACACCCCTTTTT
693706 ATTTGGTAAA
Statistics
Matches: 167, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
176 1 0.01
177 11 0.07
178 33 0.20
179 44 0.26
180 78 0.47
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (175 bp):
ACACCCCTTTTTTCAGATAAAAAAATCAAATTTTTTAGTGTTGGCCATACAATGGTCGACACCCT
TTTTGTCAGATAAAAAATTTAAATTTTTTTGGTATTGGCAATGCAATGATCGACACCCCTATTTA
TCTGATAAAAAAATCAATTTTTGGGTGTTGGCCATGCAATGGCCA
Found at i:693713 original size:58 final size:58
Alignment explanation
Indices: 693334--693757 Score: 411
Period size: 59 Copynumber: 7.1 Consensus size: 58
693324 CATTGCATGA
* *
693334 TCGACACCCCTTTTTAATCTAATAAAAAAATCAAATTTTTTTGTGTTGGCCATGTAATGG
1 TCGACACCCCTTTTT-ATCTGATAAAAAAATC-AATTTTTTTGTGTTGGCCATGCAATGG
* * * *
693394 TCGACACTCCCTTTTTGTCAGATAAAAAATTCAATTTTTTGGTGTTGGCCATGCAATGG
1 TCGACAC-CCCTTTTTATCTGATAAAAAAATCAATTTTTTTGTGTTGGCCATGCAATGG
* ** *
693453 TCGACACCCCTATTTATCTGATAAAAAAATCAAATTTTTGGGTGTTGGCTATGCAATGG
1 TCGACACCCCTTTTTATCTGATAAAAAAATC-AATTTTTTTGTGTTGGCCATGCAATGG
* * * * *
693512 CCGACACTCCCTTTTT-TCAGATAAAAAAATTTCAAAATTTTTTAGTGTTGGCCATACCATGG
1 TCGACAC-CCCTTTTTATCTGATAAAAAAA--TC--AATTTTTTTGTGTTGGCCATGCAATGG
* * * * * * * *
693574 TCGACA-CCCTTTTTGTCAGATAAAAAATTTAAATTTTTTTTGTATTGGCAATGCCATGA
1 TCGACACCCCTTTTTATCTGATAAAAAA-ATCAA-TTTTTTTGTGTTGGCCATGCAATGG
* *
693633 TCGACGCCCCTTTTTATCTGGTAAAAAAATCAATTTTTTTGTGTTGGCCATGCAATGG
1 TCGACACCCCTTTTTATCTGATAAAAAAATCAATTTTTTTGTGTTGGCCATGCAATGG
* * * * * * * * *
693691 CCAACACCCCTTTTTATTTGGTAAAAAATTAAATTTTTTTGGTGTTGACTATGTAATGG
1 TCGACACCCCTTTTTATCTGATAAAAAAATCAATTTTTTT-GTGTTGGCCATGCAATGG
*
693750 CCGACACC
1 TCGACACC
693758 AACTATTCCT
Statistics
Matches: 305, Mismatches: 48, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
58 77 0.25
59 125 0.41
60 53 0.17
61 22 0.07
62 28 0.09
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (58 bp):
TCGACACCCCTTTTTATCTGATAAAAAAATCAATTTTTTTGTGTTGGCCATGCAATGG
Found at i:694604 original size:31 final size:31
Alignment explanation
Indices: 694569--694628 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
694559 AAAAAATAAT
*
694569 AATTAGAATATACAAGAAATTAGAAATTAGA
1 AATTAAAATATACAAGAAATTAGAAATTAGA
*
694600 AATTAAAATATACAGGAAATTAGAAATTA
1 AATTAAAATATACAAGAAATTAGAAATTA
694629 AATTTGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.58, C:0.03, G:0.12, T:0.27
Consensus pattern (31 bp):
AATTAAAATATACAAGAAATTAGAAATTAGA
Found at i:695842 original size:21 final size:21
Alignment explanation
Indices: 695816--695855 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
695806 TTAAAAATTA
*
695816 GAAAATATAAAAAAATATTTC
1 GAAAATAGAAAAAAATATTTC
*
695837 GAAAATAGAAGAAAATATT
1 GAAAATAGAAAAAAATATT
695856 ATAAAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (21 bp):
GAAAATAGAAAAAAATATTTC
Found at i:695861 original size:10 final size:10
Alignment explanation
Indices: 695808--695874 Score: 55
Period size: 10 Copynumber: 6.7 Consensus size: 10
695798 TTATTTATTT
695808 AAAA-ATTAG
1 AAAATATTAG
* *
695817 AAAATATAAA
1 AAAATATTAG
*
695827 AAAATATTTCG
1 AAAATA-TTAG
**
695838 AAAATAGAAG
1 AAAATATTAG
*
695848 AAAATATTAT
1 AAAATATTAG
*
695858 AAAAAATTAG
1 AAAATATTAG
695868 AAAATAT
1 AAAATAT
695875 ATCTTACATC
Statistics
Matches: 42, Mismatches: 14, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
9 4 0.10
10 31 0.74
11 7 0.17
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.25
Consensus pattern (10 bp):
AAAATATTAG
Found at i:696977 original size:22 final size:22
Alignment explanation
Indices: 696920--696978 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
696910 TTGAGGTGTT
* *
696920 GGTGTGCTGAAATTTCGATTTT
1 GGTGAGCTGAAATTTCGATTTA
*
696942 GCTGAGCT-AGAATTTC-AGTTTA
1 GGTGAGCTGA-AATTTCGA-TTTA
696964 GGTGAGCTGAAATTT
1 GGTGAGCTGAAATTT
696979 GGGTGGTGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
21 2 0.07
22 27 0.90
23 1 0.03
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.39
Consensus pattern (22 bp):
GGTGAGCTGAAATTTCGATTTA
Found at i:697176 original size:45 final size:43
Alignment explanation
Indices: 697116--698094 Score: 137
Period size: 45 Copynumber: 23.4 Consensus size: 43
697106 TTAAATATTT
697116 AAAATTAGTAAATAATGTATTATCAAATCAAAACATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAAAA-ATTATTTGATA
*** **
697161 AAAATT-GTAATATAATAGTAATTTTTTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT-ATTTCAAATCAAAAATTATTTGATA
*
697200 AAAATTAGTAAATAATGTATTGTCAAATCAACATATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* *** **
697245 AAAATT-GTAATATAATAATAATTTTTTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT-ATTTCAAATCAAAAATTATTTGATA
*
697284 AAAATTAGTAAATAATG-ATTATCAAATCAACATATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* *** **
697328 AAAATTA-TAATATAATAATAATTTTTTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT-ATTTCAAATCAAAAATTATTTGATA
* *
697367 AAAATTAGTAAATAGTGTATTATCAAATCAATACATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* *** **
697412 AAAATT-GTAATATAATAATATCTTTTTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GTAT-TTCAAATCAAAAATTATTTGATA
* *
697451 AAAATTAGTAAATAATTTATTATCAAATCAACATATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* ** **
697496 AAAATTA-TAATATAATAATAATTT-TTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT-ATTTCAAATCAAAAATTATTTGATA
* * *
697534 AAAATTAGTAAATAATTTATTATCAAATCAACACATTATTTAATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* *** **
697579 AAAATT-GTAATATAATAATAATTTTTTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT-ATTTCAAATCAAAAATTATTTGATA
* * *
697618 AAAATTAATAAATAATTTATTATCAAATCAACATATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* *** **
697663 AAAATTA-TAATATAATAATAATTTTTGAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT-ATTTCAAATCAAAAATTATTTGATA
* *
697702 AAATTTAGTAAATAATGTATTGTCAAATCAACACATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* *** **
697747 AAAATT-GTAATATAATAATAATTTTTTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT-ATTTCAAATCAAAAATTATTTGATA
*
697786 AAAATTAGTAAATAATGTATTGTCAAATCAATATATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* *** **
697831 AAAATTA-TAATATAATAATAATTTTTTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT-ATTTCAAATCAAAAATTATTTGATA
* *
697870 AAAATTAGTAAATAATATATTGTCAAATCAACACATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
** **
697915 AAAATT-GT-AATATAT-TAATTT-TTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAAATA-ATGT-ATTTCAAATCAAAAATTATTTGATA
*
697950 AAAATTAGTAAATAATGTATTATCAAATCAACACATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
* ** **
697995 AAAATTA-TAATATAATAATAAATTT-TTAT-TTAAA-TA-TT--T-
1 AAAATTAGTAA-ATAAT-GT--ATTTCAAATCAAAAATTATTTGATA
698034 AAAATTAGTAAATAATGTATTATCAAATCAATAAATTATTTGATA
1 AAAATTAGTAAATAATGTATT-TCAAATCAA-AAATTATTTGATA
698079 AAAATT-GTAATATAAT
1 AAAATTAGTAA-ATAAT
698095 AATAAATTTT
Statistics
Matches: 649, Mismatches: 146, Indels: 278
0.60 0.14 0.26
Matches are distributed among these distances:
35 6 0.01
36 17 0.03
37 31 0.05
38 53 0.08
39 109 0.17
40 65 0.10
41 24 0.04
42 42 0.06
43 30 0.05
44 82 0.13
45 122 0.19
46 39 0.06
47 26 0.04
48 3 0.00
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (43 bp):
AAAATTAGTAAATAATGTATTTCAAATCAAAAATTATTTGATA
Found at i:697215 original size:84 final size:84
Alignment explanation
Indices: 697070--698620 Score: 2492
Period size: 84 Copynumber: 18.5 Consensus size: 84
697060 TAAATTTAAA
697070 ATTTGATAAAAATTGTAATATAATAATAA-TTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697134 ATTATCAAATCAAAACATT
66 ATTATCAAATCAACACATT
*
697153 ATTTGATAAAAATTGTAATATAATAGTAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* *
697218 ATTGTCAAATCAACATATT
66 ATTATCAAATCAACACATT
697237 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATG-
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697301 ATTATCAAATCAACATATT
66 ATTATCAAATCAACACATT
* *
697320 ATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAGTGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697385 ATTATCAAATCAATACATT
66 ATTATCAAATCAACACATT
*
697404 ATTTGATAAAAATTGTAATATAATAAT-ATCTTTTTATTTAAATATTTAAAATTAGTAAATAATT
1 ATTTGATAAAAATTGTAATATAATAATAAT-TTTTTATTTAAATATTTAAAATTAGTAAATAATG
*
697468 TATTATCAAATCAACATATT
65 TATTATCAAATCAACACATT
* *
697488 ATTTGATAAAAATTATAATATAATAATAA-TTTTTATTTAAATATTTAAAATTAGTAAATAATTT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
697552 ATTATCAAATCAACACATT
66 ATTATCAAATCAACACATT
* * *
697571 ATTTAATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAATAAATAATTT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697636 ATTATCAAATCAACATATT
66 ATTATCAAATCAACACATT
* * *
697655 ATTTGATAAAAATTATAATATAATAATAATTTTTGATTTAAATATTTAAATTTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697720 ATTGTCAAATCAACACATT
66 ATTATCAAATCAACACATT
697739 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* * *
697804 ATTGTCAAATCAATATATT
66 ATTATCAAATCAACACATT
* *
697823 ATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATAT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697888 ATTGTCAAATCAACACATT
66 ATTATCAAATCAACACATT
697907 ATTTGATAAAAATTGTAATAT-AT--TAA-TTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
697968 ATTATCAAATCAACACATT
66 ATTATCAAATCAACACATT
* *
697987 ATTTGATAAAAATTATAATATAATAATAAATTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* *
698052 ATTATCAAATCAATAAATT
66 ATTATCAAATCAACACATT
*
698071 ATTTGATAAAAATTGTAATATAATAATAAATTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
698136 GTTATCAAATCAACACATT
66 ATTATCAAATCAACACATT
* *
698155 ATTTGATAAAATTTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATAT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* *
698220 ATTATCAAATCAATATATT
66 ATTATCAAATCAACACATT
* *
698239 ATTTGATAAAAATTGTAATATAATAATAA-CTTTTATTTAAATATTTAAAATTAGTAAATAATTT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
698303 ATTATCAAATCAACATATT
66 ATTATCAAATCAACACATT
* * *
698322 ATTTGGTAAAAATTGTAATATAATAATAATTTTTGATTTAAATATTTAAATTTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
698387 ATTATCAAATTAACACATT
66 ATTATCAAATCAACACATT
* *
698406 ATTTGATAAAAATTGTAATATAATAATAATTTTTTTATTTAAATATTTAAATTTAGTAAATAATT
1 ATTTGATAAAAATTGTAATATAATAATAA-TTTTTTATTTAAATATTTAAAATTAGTAAATAATG
*
698471 TATTATCAAATCAACACTTT
65 TATTATCAAATCAACACATT
* * * * *
698491 ATTTGATAAAAATTGTAATATAATAATAATTTGTAATTTAAATA-TGAAAATTTGATAAAAAATG
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAG-TAAATAATG
* * *
698555 TATTGTCAAATGAACACAAT
65 TATTATCAAATCAACACATT
*
698575 ATTTGATATAAATTGTAATATAATAATAATCTTTTTTATTTAAATA
1 ATTTGATAAAAATTGTAATATAATAATAA--TTTTTTATTTAAATA
698621 ATATTAAATT
Statistics
Matches: 1370, Mismatches: 84, Indels: 25
0.93 0.06 0.02
Matches are distributed among these distances:
80 72 0.05
81 5 0.00
83 281 0.21
84 918 0.67
85 81 0.06
86 13 0.01
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.44
Consensus pattern (84 bp):
ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
ATTATCAAATCAACACATT
Found at i:697262 original size:167 final size:168
Alignment explanation
Indices: 697070--698620 Score: 2512
Period size: 167 Copynumber: 9.3 Consensus size: 168
697060 TAAATTTAAA
697070 ATTTGATAAAAATTGTAATATAATAATAA-TTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* * * *
697134 ATTATCAAATCAAAACATTATTTGATAAAAATTGTAATATAATAGTAATTTTTTATTTAAATATT
66 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
* *
697199 TAAAATTAGTAAATAATGTATTGTCAAATCAACATATT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACACATT
697237 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATG-
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
697301 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
66 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
* *
697366 TAAAATTAGTAAATAGTGTATTATCAAATCAATACATT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACACATT
*
697404 ATTTGATAAAAATTGTAATATAATAAT-ATCTTTTTATTTAAATATTTAAAATTAGTAAATAATT
1 ATTTGATAAAAATTGTAATATAATAATAAT-TTTTTATTTAAATATTTAAAATTAGTAAATAATG
697468 TATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAA-TTTTTATTTAAATAT
65 TATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATAT
*
697532 TTAAAATTAGTAAATAATTTATTATCAAATCAACACATT
130 TTAAAATTAGTAAATAATGTATTATCAAATCAACACATT
* * *
697571 ATTTAATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAATAAATAATTT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697636 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTGATTTAAATATT
66 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
* *
697701 TAAATTTAGTAAATAATGTATTGTCAAATCAACACATT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACACATT
697739 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* *
697804 ATTGTCAAATCAATATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
66 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
* *
697869 TAAAATTAGTAAATAATATATTGTCAAATCAACACATT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACACATT
697907 ATTTGATAAAAATTGTAATAT-AT--TAA-TTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* *
697968 ATTATCAAATCAACACATTATTTGATAAAAATTATAATATAATAATAAATTTTTATTTAAATATT
66 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
* *
698033 TAAAATTAGTAAATAATGTATTATCAAATCAATAAATT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACACATT
*
698071 ATTTGATAAAAATTGTAATATAATAATAAATTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* * * *
698136 GTTATCAAATCAACACATTATTTGATAAAATTTGTAATATAATAATAATTTTTTATTTAAATATT
66 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
* * *
698201 TAAAATTAGTAAATAATATATTATCAAATCAATATATT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACACATT
* *
698239 ATTTGATAAAAATTGTAATATAATAATAA-CTTTTATTTAAATATTTAAAATTAGTAAATAATTT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* * *
698303 ATTATCAAATCAACATATTATTTGGTAAAAATTGTAATATAATAATAATTTTTGATTTAAATATT
66 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
* *
698368 TAAATTTAGTAAATAATGTATTATCAAATTAACACATT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACACATT
* *
698406 ATTTGATAAAAATTGTAATATAATAATAATTTTTTTATTTAAATATTTAAATTTAGTAAATAATT
1 ATTTGATAAAAATTGTAATATAATAATAA-TTTTTTATTTAAATATTTAAAATTAGTAAATAATG
* * *
698471 TATTATCAAATCAACACT-TTATTTGATAAAAATTGTAATATAATAATAATTTGTAATTTAAATA
65 TATTATCAAATCAACA-TATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATA
* * * * * *
698535 -TGAAAATTTGATAAAAAATGTATTGTCAAATGAACACAAT
129 TTTAAAATTAG-TAAATAATGTATTATCAAATCAACACATT
*
698575 ATTTGATATAAATTGTAATATAATAATAATCTTTTTTATTTAAATA
1 ATTTGATAAAAATTGTAATATAATAATAA--TTTTTTATTTAAATA
698621 ATATTAAATT
Statistics
Matches: 1304, Mismatches: 66, Indels: 25
0.93 0.05 0.02
Matches are distributed among these distances:
164 151 0.12
165 5 0.00
166 2 0.00
167 503 0.39
168 483 0.37
169 144 0.11
170 16 0.01
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.44
Consensus pattern (168 bp):
ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATT
TAAAATTAGTAAATAATGTATTATCAAATCAACACATT
Found at i:697512 original size:251 final size:252
Alignment explanation
Indices: 697070--698620 Score: 2503
Period size: 251 Copynumber: 6.2 Consensus size: 252
697060 TAAATTTAAA
697070 ATTTGATAAAAATTGTAATATAATAATAA-TTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* *
697134 ATTATCAAATCAAAACATTATTTGATAAAAATTGTAATATAATAGTAATTTTTTATTTAAATATT
66 ATTATCAAATCAACACATTATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATT
*
697199 TAAAATTAGTAAATAATGTATTGTCAAATCAACATATTATTTGATAAAAATTGTAATATAATAAT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACATATTATTTGATAAAAATTGTAATATAATAAT
697264 AATTTTTTATTTAAATATTTAAAATTAGTAAATAATG-ATTATCAAATCAACATATT
196 AATTTTTTATTTAAATATTTAAAATTAGTAAATAATGTATTATCAAATCAACATATT
* *
697320 ATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAGTGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697385 ATTATCAAATCAATACATTATTTGATAAAAATTGTAATATAATAAT-ATCTTTTTATTTAAATAT
66 ATTATCAAATCAACACATTATTTGATAAAAATTGTAATATAATAATAAT-TTTTTATTTAAATAT
* *
697449 TTAAAATTAGTAAATAATTTATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAA
130 TTAAAATTAGTAAATAATGTATTATCAAATCAACATATTATTTGATAAAAATTGTAATATAATAA
* *
697514 TAA-TTTTTATTTAAATATTTAAAATTAGTAAATAATTTATTATCAAATCAACACATT
195 TAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGTATTATCAAATCAACATATT
* * *
697571 ATTTAATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAATAAATAATTT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* * *
697636 ATTATCAAATCAACATATTATTTGATAAAAATTATAATATAATAATAATTTTTGATTTAAATATT
66 ATTATCAAATCAACACATTATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATT
* * *
697701 TAAATTTAGTAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAATATAATAAT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACATATTATTTGATAAAAATTGTAATATAATAAT
* *
697766 AATTTTTTATTTAAATATTTAAAATTAGTAAATAATGTATTGTCAAATCAATATATT
196 AATTTTTTATTTAAATATTTAAAATTAGTAAATAATGTATTATCAAATCAACATATT
* *
697823 ATTTGATAAAAATTATAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATAT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
697888 ATTGTCAAATCAACACATTATTTGATAAAAATTGTAATAT-AT--TAA-TTTTTATTTAAATATT
66 ATTATCAAATCAACACATTATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATT
* *
697949 TAAAATTAGTAAATAATGTATTATCAAATCAACACATTATTTGATAAAAATTATAATATAATAAT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACATATTATTTGATAAAAATTGTAATATAATAAT
* * *
698014 AAATTTTTATTTAAATATTTAAAATTAGTAAATAATGTATTATCAAATCAATAAATT
196 AATTTTTTATTTAAATATTTAAAATTAGTAAATAATGTATTATCAAATCAACATATT
*
698071 ATTTGATAAAAATTGTAATATAATAATAAATTTTTATTTAAATATTTAAAATTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
* *
698136 GTTATCAAATCAACACATTATTTGATAAAATTTGTAATATAATAATAATTTTTTATTTAAATATT
66 ATTATCAAATCAACACATTATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATT
* *
698201 TAAAATTAGTAAATAATATATTATCAAATCAATATATTATTTGATAAAAATTGTAATATAATAAT
131 TAAAATTAGTAAATAATGTATTATCAAATCAACATATTATTTGATAAAAATTGTAATATAATAAT
* *
698266 AA-CTTTTATTTAAATATTTAAAATTAGTAAATAATTTATTATCAAATCAACATATT
196 AATTTTTTATTTAAATATTTAAAATTAGTAAATAATGTATTATCAAATCAACATATT
* * *
698322 ATTTGGTAAAAATTGTAATATAATAATAATTTTTGATTTAAATATTTAAATTTAGTAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
*
698387 ATTATCAAATTAACACATTATTTGATAAAAATTGTAATATAATAATAATTTTTTTATTTAAATAT
66 ATTATCAAATCAACACATTATTTGATAAAAATTGTAATATAATAATAA-TTTTTTATTTAAATAT
* *
698452 TTAAATTTAGTAAATAATTTATTATCAAATCAACACT-TTATTTGATAAAAATTGTAATATAATA
130 TTAAAATTAGTAAATAATGTATTATCAAATCAACA-TATTATTTGATAAAAATTGTAATATAATA
* * * * * * * * *
698516 ATAATTTGTAATTTAAATA-TGAAAATTTGATAAAAAATGTATTGTCAAATGAACACAAT
194 ATAATTTTTTATTTAAATATTTAAAATTAG-TAAATAATGTATTATCAAATCAACATATT
*
698575 ATTTGATATAAATTGTAATATAATAATAATCTTTTTTATTTAAATA
1 ATTTGATAAAAATTGTAATATAATAATAA--TTTTTTATTTAAATA
698621 ATATTAAATT
Statistics
Matches: 1207, Mismatches: 79, Indels: 25
0.92 0.06 0.02
Matches are distributed among these distances:
248 230 0.19
249 5 0.00
250 63 0.05
251 517 0.43
252 316 0.26
253 62 0.05
255 14 0.01
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.44
Consensus pattern (252 bp):
ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATTTAAAATTAGTAAATAATGT
ATTATCAAATCAACACATTATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATATT
TAAAATTAGTAAATAATGTATTATCAAATCAACATATTATTTGATAAAAATTGTAATATAATAAT
AATTTTTTATTTAAATATTTAAAATTAGTAAATAATGTATTATCAAATCAACATATT
Found at i:698236 original size:16 final size:15
Alignment explanation
Indices: 698211--698240 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
698201 TAAAATTAGT
698211 AAATAATATATTATC
1 AAATAATATATTATC
698226 AAATCAATATATTAT
1 AAAT-AATATATTAT
698241 TTGATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAATAATATATTATC
Found at i:698791 original size:28 final size:28
Alignment explanation
Indices: 698737--698792 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
698727 TATGTTCATT
* **
698737 AATTTTTAAATTAATTTCAACTTAAATA
1 AATTTTCAAATTAATTTCAACACAAATA
**
698765 AATTTTCAAATTAATTTTTACACAAATA
1 AATTTTCAAATTAATTTCAACACAAATA
698793 TTCTTCATGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.45
Consensus pattern (28 bp):
AATTTTCAAATTAATTTCAACACAAATA
Found at i:700233 original size:23 final size:23
Alignment explanation
Indices: 700180--700293 Score: 135
Period size: 23 Copynumber: 5.0 Consensus size: 23
700170 AAGTGCTGGG
*
700180 GAAACAGTAAGCACACACAGTGC
1 GAAACAGTAGGCACACACAGTGC
* * *
700203 -AATCAGTAGGCGCACATAGTGC
1 GAAACAGTAGGCACACACAGTGC
700225 -AAATCAGTAGGCACACGA-AGTGC
1 GAAA-CAGTAGGCACAC-ACAGTGC
*
700248 GAAACAGTAGGCACACAAAGTGC
1 GAAACAGTAGGCACACACAGTGC
*
700271 GAAACAGTAAGCACACACAGTGC
1 GAAACAGTAGGCACACACAGTGC
700294 TGAACGGTAA
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
22 21 0.27
23 54 0.68
24 4 0.05
ACGTcount: A:0.40, C:0.24, G:0.25, T:0.11
Consensus pattern (23 bp):
GAAACAGTAGGCACACACAGTGC
Found at i:700279 original size:46 final size:45
Alignment explanation
Indices: 700180--700293 Score: 151
Period size: 46 Copynumber: 2.5 Consensus size: 45
700170 AAGTGCTGGG
* * *
700180 GAAACAGTAAGCACACACAGTGCAATCAGTAGGCGCACATAGTGC
1 GAAACAGTAAGCACACACAGTGCAAACAGTAGGCACACAAAGTGC
*
700225 -AAATCAGTAGGCACACGA-AGTGCGAAACAGTAGGCACACAAAGTGC
1 GAAA-CAGTAAGCACAC-ACAGTGC-AAACAGTAGGCACACAAAGTGC
700271 GAAACAGTAAGCACACACAGTGC
1 GAAACAGTAAGCACACACAGTGC
700294 TGAACGGTAA
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
44 3 0.05
45 17 0.29
46 36 0.61
47 3 0.05
ACGTcount: A:0.40, C:0.24, G:0.25, T:0.11
Consensus pattern (45 bp):
GAAACAGTAAGCACACACAGTGCAAACAGTAGGCACACAAAGTGC
Found at i:700305 original size:23 final size:23
Alignment explanation
Indices: 700156--700293 Score: 129
Period size: 23 Copynumber: 5.9 Consensus size: 23
700146 CGAAGTACTT
700156 AACAGTAAGCACAC-AAGTGCTGGGGA
1 AACAGTAAGCACACAAAGTGC----GA
*
700182 AACAGTAAGCACACACAGTGC-A
1 AACAGTAAGCACACAAAGTGCGA
* * * *
700204 ATCAGTAGGCGCACATAGTGC-A
1 AACAGTAAGCACACAAAGTGCGA
* *
700226 AATCAGTAGGCACACGAAGTGCGA
1 AA-CAGTAAGCACACAAAGTGCGA
*
700250 AACAGTAGGCACACAAAGTGCGA
1 AACAGTAAGCACACAAAGTGCGA
*
700273 AACAGTAAGCACACACAGTGC
1 AACAGTAAGCACACAAAGTGC
700294 TGAACGGTAA
Statistics
Matches: 97, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
22 20 0.21
23 55 0.57
24 3 0.03
26 14 0.14
27 5 0.05
ACGTcount: A:0.40, C:0.23, G:0.25, T:0.12
Consensus pattern (23 bp):
AACAGTAAGCACACAAAGTGCGA
Found at i:705207 original size:60 final size:61
Alignment explanation
Indices: 705143--705349 Score: 176
Period size: 62 Copynumber: 3.4 Consensus size: 61
705133 ATTACATGAC
*
705143 CAACACAAAAAAAAATT-AATTTTTTACTAAATAAAAAGAAGGTGTCGACTATGGTATGGT
1 CAACACAAAAAAAAATTGAATTTTTTACTAAATAAAAAGGAGGTGTCGACTATGGTATGGT
* * ** * * *
705203 CAACACCCAAAAAAAATTGAATTTTTTATTTCACAAAAATGGA-GTGTC-AGCCATTGTATGGT
1 CAACA-CAAAAAAAAATTGAATTTTTTACTAAATAAAAA-GGAGGTGTCGA-CTATGGTATGGT
* * * * * *
705265 CAACAC--AAAAAAATT-AATTTTTTTACCAGATAAAAAAGGGGGTGTCG-GTCATGGCATGAT
1 CAACACAAAAAAAAATTGAA-TTTTTTACTAAAT-AAAAAGGAGGTGTCGACT-ATGGTATGGT
*
705325 CAACACAAAAAAAATTTGAATTTTT
1 CAACACAAAAAAAAATTGAATTTTT
705350 CATCTGACAA
Statistics
Matches: 115, Mismatches: 20, Indels: 22
0.73 0.13 0.14
Matches are distributed among these distances:
58 2 0.02
59 19 0.17
60 28 0.24
61 13 0.11
62 49 0.43
63 4 0.03
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (61 bp):
CAACACAAAAAAAAATTGAATTTTTTACTAAATAAAAAGGAGGTGTCGACTATGGTATGGT
Found at i:705396 original size:60 final size:59
Alignment explanation
Indices: 705123--705605 Score: 368
Period size: 61 Copynumber: 8.0 Consensus size: 59
705113 AGGGGAAGTT
** * * * **
705123 GGTGTCGGCCATTACATGACCAACACAAAAAAAAATT-AATTTTTTA-CTAAATAAAAAGAA
1 GGTGTCGGCCATGGCATGGCCAACAC-AAAAAAATTTGAATTTTTTATCT-GA-AAAAAGGG
* * * * * * * *
705183 GGTGTCGACTATGGTATGGTCAACACCCAAAAAAAATTGAATTTTTTATTTCACAAAAATGG
1 GGTGTCGGCCATGGCATGGCCAACA--CAAAAAAATTTGAATTTTTTATCTGA-AAAAAGGG
* * * * * * *
705245 AGTGTCAGCCATTGTATGGTCAACACAAAAAAA-TT-AATTTTTTTACCAGATAAAAAAGGG
1 GGTGTCGGCCATGGCATGGCCAACACAAAAAAATTTGAA-TTTTTTATCTG--AAAAAAGGG
* ** *
705305 GGTGTCGGTCATGGCATGATCAACACAAAAAAAATTTGAATTTTTCATCTGACAAAAAGGG
1 GGTGTCGGCCATGGCATGGCCAACAC-AAAAAAATTTGAATTTTTTATCTGA-AAAAAGGG
* * *
705366 GGTGTCGGCCATGACATGGCCAACAC-AAAAATTTTGAAATTTTTTTATTTGAAAAAA-GG
1 GGTGTCGGCCATGGCATGGCCAACACAAAAAAATTTG-AA-TTTTTTATCTGAAAAAAGGG
* * * * *
705425 GTTGTCGGCAATTGAATGGCCAACACAAAAAAATTTAAATTTTTTATCTGACAAAAAGGG
1 GGTGTCGGCCATGGCATGGCCAACACAAAAAAATTTGAATTTTTTATCTGA-AAAAAGGG
* * *
705485 GGTGTCGGACATGGCATGGCCAACACCAAAAAATTTTGAAATTTTTTTATCTG-AAAAAGAG
1 GGTGTCGGCCATGGCATGGCCAACA-CAAAAAAATTTG-AA-TTTTTTATCTGAAAAAAGGG
* * * * *
705546 AGTGTCGGCCATGGCATTGCTAACACCAAAAAATTTTAAAATTTTTTATCTGAAAAAAGG
1 GGTGTCGGCCATGGCATGGCCAACA-CAAAAAAATTT-GAATTTTTTATCTGAAAAAAGG
705606 ACACCAAAAA
Statistics
Matches: 341, Mismatches: 61, Indels: 41
0.77 0.14 0.09
Matches are distributed among these distances:
58 13 0.04
59 48 0.14
60 102 0.30
61 116 0.34
62 48 0.14
63 14 0.04
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (59 bp):
GGTGTCGGCCATGGCATGGCCAACACAAAAAAATTTGAATTTTTTATCTGAAAAAAGGG
Found at i:705500 original size:180 final size:181
Alignment explanation
Indices: 705123--705606 Score: 468
Period size: 180 Copynumber: 2.7 Consensus size: 181
705113 AGGGGAAGTT
* ** * * *
705123 GGTGTCGGCCATTACATGACCAACACAAAAAAAAATT--AATTTTTT-A-CTAAATAAAAAGAAG
1 GGTGTCGGACATGGCATGACCAACACAAAAAAAATTTGAAATTTTTTCATCTGAA-AAAGAG-A-
* * ** * ** * *
705184 GTGTCGACTATGGTATGGTCAACACCCAAAAAAAATT-GAATTTTTTATTTCACAAAAATGGAGT
63 GTGTCGGCCATGACATGGCCAACA-CCAAAAAATTTTAAAATTTTTTATTTGA-AAAAA-GGAGT
* * * *
705248 GTCAGCCATTGTATGGTCAACACAAAAAAATTAATTTTTTTACCAGATAAAAAAGGG
125 GTCAGCAATTGAATGGCCAACACAAAAAAATTAAATTTTTTACCAGATAAAAAAGGG
* * * *
705305 GGTGTCGGTCATGGCATGATCAACACAAAAAAAATTTG-AA-TTTTTCATCTGACAAAAAGGGGG
1 GGTGTCGGACATGGCATGACCAACACAAAAAAAATTTGAAATTTTTTCATCTG--AAAAAGAGAG
*
705368 TGTCGGCCATGACATGGCCAACA-C-AAAAATTTTGAAATTTTTTTATTTGAAAAAAGG-GTTGT
64 TGTCGGCCATGACATGGCCAACACCAAAAAATTTT-AAAATTTTTTATTTGAAAAAAGGAG-TGT
* * * *
705430 CGGCAATTGAATGGCCAACACAAAAAAATTTAAATTTTTTATCTGA-CAAAAAGGG
127 CAGCAATTGAATGGCCAACACAAAAAAA-TTAAATTTTTTACCAGATAAAAAAGGG
* * * *
705485 GGTGTCGGACATGGCATGGCCAACACCAAAAAATTTTGAAATTTTTTTATCTGAAAAAGAGAGTG
1 GGTGTCGGACATGGCATGACCAACACAAAAAAAATTTGAAATTTTTTCATCTGAAAAAGAGAGTG
* * * *
705550 TCGGCCATGGCATTGCTAACACCAAAAAATTTTAAAATTTTTTATCTGAAAAAAGGA
66 TCGGCCATGACATGGCCAACACCAAAAAATTTTAAAATTTTTTATTTGAAAAAAGGA
705607 CACCAAAAAA
Statistics
Matches: 248, Mismatches: 40, Indels: 28
0.78 0.13 0.09
Matches are distributed among these distances:
179 1 0.00
180 105 0.42
181 44 0.18
182 68 0.27
183 22 0.09
184 2 0.01
185 4 0.02
186 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (181 bp):
GGTGTCGGACATGGCATGACCAACACAAAAAAAATTTGAAATTTTTTCATCTGAAAAAGAGAGTG
TCGGCCATGACATGGCCAACACCAAAAAATTTTAAAATTTTTTATTTGAAAAAAGGAGTGTCAGC
AATTGAATGGCCAACACAAAAAAATTAAATTTTTTACCAGATAAAAAAGGG
Found at i:705610 original size:38 final size:39
Alignment explanation
Indices: 705568--705644 Score: 129
Period size: 38 Copynumber: 2.0 Consensus size: 39
705558 GGCATTGCTA
705568 ACACCAAAAAATTTTAAAAT-TTTTTATCTGAAAAAAGG
1 ACACCAAAAAATTTTAAAATATTTTTATCTGAAAAAAGG
* *
705606 ACACCAAAAAATTTTGAAATATTTTTATCTGAAAGAAGG
1 ACACCAAAAAATTTTAAAATATTTTTATCTGAAAAAAGG
705645 GAGTGTCGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 19 0.53
39 17 0.47
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.31
Consensus pattern (39 bp):
ACACCAAAAAATTTTAAAATATTTTTATCTGAAAAAAGG
Found at i:705832 original size:60 final size:60
Alignment explanation
Indices: 705622--705850 Score: 227
Period size: 59 Copynumber: 3.9 Consensus size: 60
705612 AAAAATTTTG
* * *
705622 AAATATTTTTATCTGA-AAGAAGGGAGTGTCGACCATTGCATGGCCAACACCCAAAAATT
1 AAATTTTTTTATCAGATAAAAAGGGAGTGTCGACCATTGCATGGCCAACACCCAAAAATT
** * * *
705681 TGATTTTTTTATCAGATAAATAA--GAGTGTCGGCCATTGCATGACCAACACCAAAAAATT
1 AAATTTTTTTATCAGATAAA-AAGGGAGTGTCGACCATTGCATGGCCAACACCCAAAAATT
* * * * * * *
705740 GAA-GTTTTTATCTGATAAAAAGGGAGTGTCGATCATTTCATGGTCAACACCCAAAAATA
1 AAATTTTTTTATCAGATAAAAAGGGAGTGTCGACCATTGCATGGCCAACACCCAAAAATT
* * *
705799 AAATTTTTTTATCAGATTAAAAAGGG-GTATCGATCA-TGCAATGACCAACACC
1 AAATTTTTTTATCAGA-TAAAAAGGGAGTGTCGACCATTGC-ATGGCCAACACC
705851 AATTTTTTTT
Statistics
Matches: 137, Mismatches: 26, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
57 2 0.01
58 14 0.10
59 79 0.58
60 31 0.23
61 11 0.08
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (60 bp):
AAATTTTTTTATCAGATAAAAAGGGAGTGTCGACCATTGCATGGCCAACACCCAAAAATT
Found at i:717578 original size:16 final size:15
Alignment explanation
Indices: 717559--717592 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
717549 CCAAAACTTT
717559 AAAAATGAAAACAAAA
1 AAAAATGAAAA-AAAA
*
717575 AAAAATTAAAAAAAA
1 AAAAATGAAAAAAAA
717590 AAA
1 AAA
717593 CCTCTGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.85, C:0.03, G:0.03, T:0.09
Consensus pattern (15 bp):
AAAAATGAAAAAAAA
Found at i:724332 original size:24 final size:24
Alignment explanation
Indices: 724291--724336 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
724281 TTAAGTTTAA
*
724291 GTTTTAAAAATAATTTTAAAATAT
1 GTTTTAAAAATAAATTTAAAATAT
**
724315 GTTTTAAATTTAAATTTAAAAT
1 GTTTTAAAAATAAATTTAAAAT
724337 TTGTATTGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
GTTTTAAAAATAAATTTAAAATAT
Found at i:728803 original size:23 final size:23
Alignment explanation
Indices: 728787--728830 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
728777 AGCACGTTTC
728787 ATGCCCTCTGTTCAGCACTGTGT
1 ATGCCCTCTGTTCAGCACTGTGT
* *
728810 GTGCCCTTTGTTCAGCACTGT
1 ATGCCCTCTGTTCAGCACTGT
728831 ATGCTTCTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.11, C:0.30, G:0.23, T:0.36
Consensus pattern (23 bp):
ATGCCCTCTGTTCAGCACTGTGT
Found at i:730366 original size:4 final size:4
Alignment explanation
Indices: 730359--730388 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
730349 TATGTATTTA
730359 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TT
1 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TT
730389 ATTATTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTGT
Found at i:731468 original size:39 final size:39
Alignment explanation
Indices: 731424--731501 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
731414 TGTCTCAAAC
731424 AAGTTTATAATATCACCCATAATTTCAAATTATTATGCT
1 AAGTTTATAATATCACCCATAATTTCAAATTATTATGCT
* * *
731463 AAGTTTCTAATTTCACCCATATTTTCAAATTATTATGCT
1 AAGTTTATAATATCACCCATAATTTCAAATTATTATGCT
731502 TACATTAATG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.44
Consensus pattern (39 bp):
AAGTTTATAATATCACCCATAATTTCAAATTATTATGCT
Found at i:734401 original size:29 final size:29
Alignment explanation
Indices: 734339--734402 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
734329 TAATCTACTG
* ** *
734339 AATTAAGTATAATTTGAATTTTTTTGGGTG
1 AATT-AGTATAATTTGAACTTTTTAAGGTA
734369 AATTAGTATAATTTGAACTTTTTAAGGTA
1 AATTAGTATAATTTGAACTTTTTAAGGTA
734398 AATTA
1 AATTA
734403 TCCGTCACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.47
Consensus pattern (29 bp):
AATTAGTATAATTTGAACTTTTTAAGGTA
Found at i:735345 original size:2 final size:2
Alignment explanation
Indices: 735333--735362 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
735323 CTCCTCCATT
*
735333 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
735363 CTCCTAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:737748 original size:2 final size:2
Alignment explanation
Indices: 737741--737769 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
737731 AGAAAAAGGA
737741 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
737770 AAAGGGGCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:739330 original size:10 final size:10
Alignment explanation
Indices: 739313--739343 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
739303 TTAACTGTAC
739313 TATACTATAT
1 TATACTATAT
*
739323 TGTACTATAT
1 TATACTATAT
739333 TATACTATAT
1 TATACTATAT
739343 T
1 T
739344 TAAAACTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.52
Consensus pattern (10 bp):
TATACTATAT
Found at i:740464 original size:19 final size:18
Alignment explanation
Indices: 740426--740484 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
740416 TCATTTGATA
740426 TAAATACTAAATTTAATAT
1 TAAAT-CTAAATTTAATAT
*
740445 TAAATCTAAATTTATGTAT
1 TAAATCTAAATTTA-ATAT
*
740464 TAAAT-TAAATATTAAAAT
1 TAAATCTAAAT-TTAATAT
740482 TAA
1 TAA
740485 TAAATAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 19 0.54
19 16 0.46
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (18 bp):
TAAATCTAAATTTAATAT
Found at i:742587 original size:14 final size:16
Alignment explanation
Indices: 742559--742590 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
742549 GGATTTAACT
742559 TTATTGATTTATAAAA
1 TTATTGATTTATAAAA
742575 TTATT-ATTT-TAAAA
1 TTATTGATTTATAAAA
742589 TT
1 TT
742591 TTAATGACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 4 0.25
16 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TTATTGATTTATAAAA
Found at i:747354 original size:3 final size:3
Alignment explanation
Indices: 747346--747370 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
747336 TCAAACCATG
747346 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
747371 ATTGTACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:747694 original size:15 final size:15
Alignment explanation
Indices: 747674--747704 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
747664 GGGCAGTAGT
747674 CTAGCAGCGGCGGCA
1 CTAGCAGCGGCGGCA
747689 CTAGCAGCGGCGGCA
1 CTAGCAGCGGCGGCA
747704 C
1 C
747705 GAATATCAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.35, G:0.39, T:0.06
Consensus pattern (15 bp):
CTAGCAGCGGCGGCA
Found at i:749267 original size:52 final size:51
Alignment explanation
Indices: 749172--749269 Score: 124
Period size: 52 Copynumber: 1.9 Consensus size: 51
749162 TGTCACAATG
* * *
749172 TAAAAACAAGACCAAATTATAAAATATGTAAATATTGAGGGTTAATTTTTT
1 TAAAAACAAGACCAAATTACAAAATATATAAATATTAAGGGTTAATTTTTT
* * * *
749223 TAAAATCAAGACTAAATTGACACAATATATAAATATTAATGGTTAAT
1 TAAAAACAAGACCAAATT-ACAAAATATATAAATATTAAGGGTTAAT
749270 ATTACTATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
51 16 0.41
52 23 0.59
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (51 bp):
TAAAAACAAGACCAAATTACAAAATATATAAATATTAAGGGTTAATTTTTT
Found at i:750434 original size:2 final size:2
Alignment explanation
Indices: 750427--750472 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
750417 ACGTACCTTT
750427 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
750469 CA CA
1 CA CA
750473 TATATATATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:753044 original size:150 final size:150
Alignment explanation
Indices: 752771--753070 Score: 573
Period size: 150 Copynumber: 2.0 Consensus size: 150
752761 CCCTTCATTT
*
752771 TTCTATTCCAACATATTAATATATCCTAATTATTTTATTTTATTTTATTTTTTTAATATACGGGT
1 TTCTATTCCAACATATTAATATATCCTAATTATTTTATTTTATTTTATTTTTTTAATATACGAGT
752836 GTGATTAAATGGTAGTATCTGTTCATACTTTCTTAACCCTTTGATAATGCACACGCACCTTACAC
66 GTGATTAAATGGTAGTATCTGTTCATACTTTCTTAACCCTTTGATAATGCACACGCACCTTACAC
*
752901 ACACAAGCGCTTGAACTCAG
131 ACACAAGCGCTCGAACTCAG
752921 TTCTATTCCAACATATTAATATATCCTAATTATTTTATTTTATTTTATTTTTTTAATATACGAGT
1 TTCTATTCCAACATATTAATATATCCTAATTATTTTATTTTATTTTATTTTTTTAATATACGAGT
*
752986 GTGATTAAATGGTAGTATCTGTTCATACTTTCTTAACCCTTTGATAATGCACATGCACCTTACAC
66 GTGATTAAATGGTAGTATCTGTTCATACTTTCTTAACCCTTTGATAATGCACACGCACCTTACAC
753051 ACACAAGCGCTCGAACTCAG
131 ACACAAGCGCTCGAACTCAG
753071 GACCTCTAAG
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (150 bp):
TTCTATTCCAACATATTAATATATCCTAATTATTTTATTTTATTTTATTTTTTTAATATACGAGT
GTGATTAAATGGTAGTATCTGTTCATACTTTCTTAACCCTTTGATAATGCACACGCACCTTACAC
ACACAAGCGCTCGAACTCAG
Found at i:753184 original size:29 final size:29
Alignment explanation
Indices: 753147--753203 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
753137 TTTTAAAATT
753147 ATATATAAAATTTT-ATTTAATATAATTTG
1 ATATAT-AAATTTTAATTTAATATAATTTG
*
753176 ATATATAAATTTTAATTTAATTTAATTT
1 ATATATAAATTTTAATTTAATATAATTT
753204 AATTGTACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (29 bp):
ATATATAAATTTTAATTTAATATAATTTG
Found at i:755289 original size:30 final size:31
Alignment explanation
Indices: 755237--755294 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
755227 AAAATGTTTA
*
755237 ATTAAAACCTCAAAATGTTTTAAAAATTCCT
1 ATTAAAACCTCAAAATGATTTAAAAATTCCT
* *
755268 ATTAAACCCTCTAAA-GATTTAAAAATT
1 ATTAAAACCTCAAAATGATTTAAAAATT
755295 TTAATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (31 bp):
ATTAAAACCTCAAAATGATTTAAAAATTCCT
Found at i:755302 original size:30 final size:31
Alignment explanation
Indices: 755227--755306 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 31
755217 ATTTTTTTTG
*
755227 AAAATGTTTAATTAAAACCTCAAAATGTTTTA
1 AAAAT-TTTAATTAAAACCTCAAAATGATTTA
* * *
755259 AAAATTCCT-ATTAAACCCTCTAAA-GATTTA
1 AAAATT-TTAATTAAAACCTCAAAATGATTTA
755289 AAAATTTTAATTAAAACC
1 AAAATTTTAATTAAAACC
755307 ATTAATTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
29 1 0.03
30 19 0.47
31 14 0.35
32 6 0.15
ACGTcount: A:0.47, C:0.14, G:0.04, T:0.35
Consensus pattern (31 bp):
AAAATTTTAATTAAAACCTCAAAATGATTTA
Found at i:755933 original size:19 final size:20
Alignment explanation
Indices: 755906--755945 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
755896 ATAATAGTAT
*
755906 AAATAT-AAATTCCTATAAA
1 AAATATAAAATTCATATAAA
*
755925 AAATTTAAAATTCATATAAA
1 AAATATAAAATTCATATAAA
755945 A
1 A
755946 TATGTATGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATATAAAATTCATATAAA
Found at i:756043 original size:2 final size:2
Alignment explanation
Indices: 756036--756063 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
756026 ATTTGATTTG
756036 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
756064 GTTTTCTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:769965 original size:6 final size:6
Alignment explanation
Indices: 769954--769979 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
769944 CACCGACGAT
769954 TGTTGC TGTTGC TGTTGC TGTTGC TG
1 TGTTGC TGTTGC TGTTGC TGTTGC TG
769980 ATTATAGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.35, T:0.50
Consensus pattern (6 bp):
TGTTGC
Found at i:770396 original size:165 final size:161
Alignment explanation
Indices: 770163--770486 Score: 540
Period size: 165 Copynumber: 2.0 Consensus size: 161
770153 ATGATTTCGG
770163 GTTGTAAGTTTTATTTTTAGAAAAAAAAAGTAATACAGCACATTCGCAAACATAAATTTATGTCC
1 GTTGTAAGTTTTATTTTTAGAAAAAAAAAGTAATACAGCACATTCGCAAACATAAATTTATGTCC
* *
770228 AATCAATTGAAATGTAAAAATATCGTAAAAATTCTTGTACTAAAAGTAGACTAACATTTTGTCTT
66 AATCAATTGAAATGTAAAAATATAGTAAAAATTCTTGTACTAAAAGTAGACTAACATTTTGTCTC
770293 CTCTACTTAAAAAATGACAAATTAATCTTGA
131 CTCTACTTAAAAAATGACAAATTAATCTTGA
* * *
770324 GTTGTAAGTTTTTTTTTTTTAAGAAAAAAAAAAGTAATACAGCACATTTGCAAATATAAATTTAT
1 GTTGTAAG--TTTTATTTTT-AG-AAAAAAAAAGTAATACAGCACATTCGCAAACATAAATTTAT
* **
770389 GTCCAATCAATTGAAATGTAAAAATATAGTAAAAGTTCTTGTACTAAAAGTAGGTTAACATTTTG
62 GTCCAATCAATTGAAATGTAAAAATATAGTAAAAATTCTTGTACTAAAAGTAGACTAACATTTTG
770454 TCTCCTCTACTTAAAAAATGACAAATTAATCTT
127 TCTCCTCTACTTAAAAAATGACAAATTAATCTT
770487 AATACAATAG
Statistics
Matches: 151, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
161 8 0.05
163 9 0.06
164 2 0.01
165 132 0.87
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.35
Consensus pattern (161 bp):
GTTGTAAGTTTTATTTTTAGAAAAAAAAAGTAATACAGCACATTCGCAAACATAAATTTATGTCC
AATCAATTGAAATGTAAAAATATAGTAAAAATTCTTGTACTAAAAGTAGACTAACATTTTGTCTC
CTCTACTTAAAAAATGACAAATTAATCTTGA
Found at i:773876 original size:20 final size:20
Alignment explanation
Indices: 773839--773877 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
773829 GATTAATGAT
*
773839 ATTAATATTTTGATAATTTA
1 ATTAATATTTTGAAAATTTA
773859 ATTAATTATTTT-AAAATTT
1 ATTAA-TATTTTGAAAATTT
773878 TAAATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
ATTAATATTTTGAAAATTTA
Found at i:774726 original size:2 final size:2
Alignment explanation
Indices: 774719--774776 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
774709 ATACAATTAC
774719 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
774761 GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA
774777 ATAAAACCCC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:780694 original size:14 final size:13
Alignment explanation
Indices: 780675--780706 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
780665 ACGACAGGGA
780675 TGAGATGAAACAC
1 TGAGATGAAACAC
780688 TTGAGATGAAACAC
1 -TGAGATGAAACAC
780702 TGAGA
1 TGAGA
780707 AAGTAAGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (13 bp):
TGAGATGAAACAC
Found at i:796050 original size:31 final size:31
Alignment explanation
Indices: 796002--796071 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
795992 GGTAAGTGTT
* *
796002 CCCACATTGAGATCTGAA-TTAGGCAATTGTA
1 CCCATATTGAGACCTGAACTTA-GCAATTGTA
*
796033 CCCATATTGAGACCTGAACTTAGCAATTGTT
1 CCCATATTGAGACCTGAACTTAGCAATTGTA
*
796064 TCCATATT
1 CCCATATT
796072 AAGATTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 31 0.91
32 3 0.09
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (31 bp):
CCCATATTGAGACCTGAACTTAGCAATTGTA
Found at i:796984 original size:21 final size:22
Alignment explanation
Indices: 796944--796985 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
796934 ATCAGCCAGA
* *
796944 TTAATAGGAATAAATGAAATTT
1 TTAATAGGAAAAAATCAAATTT
796966 TTAATA-GAAAAAATCAAATT
1 TTAATAGGAAAAAATCAAATT
796986 ACTTCATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.33
Consensus pattern (22 bp):
TTAATAGGAAAAAATCAAATTT
Found at i:798363 original size:33 final size:30
Alignment explanation
Indices: 798321--798393 Score: 74
Period size: 33 Copynumber: 2.3 Consensus size: 30
798311 TATCCAAAAA
* * *
798321 TTTTCATTTAAGTTACTAAACTATTCAAAAGTT
1 TTTTAATTTAAATCACTAAACTATT---AAGTT
*
798354 TTTTAATTTAAATCACTAAGCTATTAAGTT
1 TTTTAATTTAAATCACTAAACTATTAAGTT
798384 TTTCTAATTT
1 TTT-TAATTT
798394 CGATTAACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
30 8 0.23
31 6 0.17
33 21 0.60
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.49
Consensus pattern (30 bp):
TTTTAATTTAAATCACTAAACTATTAAGTT
Found at i:798907 original size:24 final size:23
Alignment explanation
Indices: 798880--798924 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
798870 TTGATAATAT
*
798880 TTATTTTTAGTATATTATTTAAAA
1 TTATTTTTAATATATT-TTTAAAA
798904 TTATTTTTAATATATTTTTAA
1 TTATTTTTAATATATTTTTAA
798925 TTTTTAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TTATTTTTAATATATTTTTAAAA
Found at i:798921 original size:11 final size:11
Alignment explanation
Indices: 798881--798925 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
798871 TGATAATATT
*
798881 TATTTTTAGTA
1 TATTTTTAATA
*
798892 TATTATTTAAAA
1 TATT-TTTAATA
798904 TTATTTTTAATA
1 -TATTTTTAATA
798916 TATTTTTAAT
1 TATTTTTAAT
798926 TTTTAAGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 14 0.48
12 11 0.38
13 4 0.14
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTTAATA
Found at i:799954 original size:2 final size:2
Alignment explanation
Indices: 799947--799978 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
799937 AGAAATAGCG
799947 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
799979 TCTTCTCAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:800951 original size:12 final size:12
Alignment explanation
Indices: 800934--800989 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
800924 TATTTTTACA
800934 TAAAAATAAATT
1 TAAAAATAAATT
* *
800946 TAAAAAAATAATA
1 TAAAAATA-AATT
800959 TAACAAATAAA-T
1 TAA-AAATAAATT
*
800971 TGAAAATAAATT
1 TAAAAATAAATT
*
800983 AAAAAAT
1 TAAAAAT
800990 CTTTATACTT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
11 7 0.21
12 15 0.44
13 8 0.24
14 4 0.12
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (12 bp):
TAAAAATAAATT
Done.