Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 24 of 182
Found at i:10071213 original size:20 final size:19
Alignment explanation
Indices: 10071188--10071224 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
10071178 TGTAATCTAC
*
10071188 ATATA-AATTTTATTAAAT
1 ATATATAATTTTATGAAAT
10071206 ATATATAATTTTATGAAAT
1 ATATATAATTTTATGAAAT
10071225 TGAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
ATATATAATTTTATGAAAT
Found at i:10084114 original size:3 final size:3
Alignment explanation
Indices: 10084106--10084132 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
10084096 GTAAGCATGC
10084106 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
10084133 CTGTGTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10095682 original size:13 final size:13
Alignment explanation
Indices: 10095650--10095682 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
10095640 AAAAAAGTTC
10095650 ATAAAATAAAAAT
1 ATAAAATAAAAAT
10095663 ACT-AAATAAAAAT
1 A-TAAAATAAAAAT
10095676 ATAAAAT
1 ATAAAAT
10095683 TAAATCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.06
13 16 0.89
14 1 0.06
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAAAATAAAAAT
Found at i:10101123 original size:6 final size:6
Alignment explanation
Indices: 10101112--10101136 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
10101102 TGGAAAAAAT
10101112 AGGAAA AGGAAA AGGAAA AGGAAA A
1 AGGAAA AGGAAA AGGAAA AGGAAA A
10101137 AAAACCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AGGAAA
Found at i:10102017 original size:15 final size:15
Alignment explanation
Indices: 10101980--10102019 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
10101970 CATTTCGAAG
10101980 CGCCGC-AAAAA-AA
1 CGCCGCTAAAAATAA
*
10101993 -GCCACTAAAAATAA
1 CGCCGCTAAAAATAA
10102007 CGCCGCTAAAAAT
1 CGCCGCTAAAAAT
10102020 CGCGACGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 4 0.18
13 5 0.23
14 2 0.09
15 11 0.50
ACGTcount: A:0.50, C:0.28, G:0.12, T:0.10
Consensus pattern (15 bp):
CGCCGCTAAAAATAA
Found at i:10102145 original size:41 final size:41
Alignment explanation
Indices: 10102086--10102175 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 41
10102076 CCCACAAATG
* * *
10102086 CCGCTAATGACCCGACCTTTAGCGGCACTTTGGATAAAGCA
1 CCGCTAATAACCCAACCTTTAGCGGCACTTTGGAGAAAGCA
* * * *
10102127 CCGCTAATAACCCAACCTTTAGTGGCGCTTTGGGGAAAGCG
1 CCGCTAATAACCCAACCTTTAGCGGCACTTTGGAGAAAGCA
10102168 CCGCTAAT
1 CCGCTAAT
10102176 GCTTTACCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (41 bp):
CCGCTAATAACCCAACCTTTAGCGGCACTTTGGAGAAAGCA
Found at i:10102783 original size:6 final size:6
Alignment explanation
Indices: 10102765--10102873 Score: 82
Period size: 6 Copynumber: 18.0 Consensus size: 6
10102755 TTAAATTGAT
* *
10102765 TTTAAA TTT--A TTTAAA TTTAGA TTT-AT TTTAAA TTTAAATA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT-AA-A TTTAAA
* ** *
10102812 TTT-AA TTTGAA TTTAAA TTTAAA TAAAAA TTAAAA TATTAAA TTTAACA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAA-A
*
10102861 TTAAAAA TTTAAA
1 TT-TAAA TTTAAA
10102874 GCCCAATGTC
Statistics
Matches: 83, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
4 4 0.05
5 8 0.10
6 50 0.60
7 15 0.18
8 6 0.07
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (6 bp):
TTTAAA
Found at i:10102795 original size:17 final size:15
Alignment explanation
Indices: 10102769--10102833 Score: 78
Period size: 17 Copynumber: 4.1 Consensus size: 15
10102759 ATTGATTTTA
10102769 AATTTATTTAAATTT
1 AATTTATTTAAATTT
10102784 AGATTTATTTTAAATTT
1 A-ATTTA-TTTAAATTT
*
10102801 AA-ATATTTAAATTT
1 AATTTATTTAAATTT
10102815 AATTTGAATTTAAATTT
1 AATTT--ATTTAAATTT
10102832 AA
1 AA
10102834 ATAAAAATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
14 11 0.26
15 4 0.09
16 6 0.14
17 22 0.51
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
AATTTATTTAAATTT
Found at i:10102811 original size:31 final size:31
Alignment explanation
Indices: 10102773--10102836 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
10102763 ATTTTAAATT
*
10102773 TATTTAAATTTAGATTT-ATTTTAAATTTAAA
1 TATTTAAATTTA-ATTTGAATTTAAATTTAAA
10102804 TATTTAAATTTAATTTGAATTTAAATTTAAA
1 TATTTAAATTTAATTTGAATTTAAATTTAAA
10102835 TA
1 TA
10102837 AAAATTAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (31 bp):
TATTTAAATTTAATTTGAATTTAAATTTAAA
Found at i:10102819 original size:11 final size:11
Alignment explanation
Indices: 10102755--10102835 Score: 64
Period size: 11 Copynumber: 7.5 Consensus size: 11
10102745 GACTTTTGAG
* *
10102755 TTAAATTGATT
1 TTAAATTTAAT
10102766 TTAAATTT-AT
1 TTAAATTTAAT
10102776 TTAAATTTAGAT
1 TTAAATTTA-AT
*
10102788 TT-ATTTTAAAT
1 TTAAATTT-AAT
10102799 TTAAA--T-AT
1 TTAAATTTAAT
10102807 TTAAATTTAAT
1 TTAAATTTAAT
*
10102818 TTGAATTTAAAT
1 TTAAATTT-AAT
10102830 TTAAAT
1 TTAAAT
10102836 AAAAATTAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
8 7 0.12
10 11 0.20
11 24 0.43
12 14 0.25
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:10102832 original size:42 final size:41
Alignment explanation
Indices: 10102765--10102858 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 41
10102755 TTAAATTGAT
* ** * *
10102765 TTTAAATTT-ATTTAAATTTAGATTTATTTTAAATTTAAATA
1 TTTAAATTTAATTTAAATTTAAATTTAAATAAAAATTAAA-A
*
10102806 TTTAAATTTAATTTGAATTTAAATTTAAATAAAAATTAAAA
1 TTTAAATTTAATTTAAATTTAAATTTAAATAAAAATTAAAA
10102847 TATTAAATTTAA
1 T-TTAAATTTAA
10102859 CATTAAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 11 0.24
42 34 0.76
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (41 bp):
TTTAAATTTAATTTAAATTTAAATTTAAATAAAAATTAAAA
Found at i:10102872 original size:20 final size:18
Alignment explanation
Indices: 10102821--10102873 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
10102811 ATTTAATTTG
*
10102821 AATTTAAATTTAAATAAA
1 AATTAAAATTTAAATAAA
*
10102839 AATTAAAATATTAAATTTAA
1 AATTAAAAT-TTAAA-TAAA
*
10102859 CATTAAAAATTTAAA
1 AATT-AAAATTTAAA
10102874 GCCCAATGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.28
19 5 0.17
20 11 0.38
21 5 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTAAAATTTAAATAAA
Found at i:10103084 original size:20 final size:20
Alignment explanation
Indices: 10103037--10103095 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
10103027 CACGTGCCTA
* *
10103037 CTGCTGCTGGCCACCAACTC
1 CTGCTGCTGACCACCAGCTC
*
10103057 CAT-TTGCTGACCACCAGCTC
1 C-TGCTGCTGACCACCAGCTC
*
10103077 CTGCTGCTGCTCCACCAGC
1 CTGCTGCTG-ACCACCAGC
10103096 CGCCTGCTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.03
20 21 0.68
21 9 0.29
ACGTcount: A:0.15, C:0.44, G:0.19, T:0.22
Consensus pattern (20 bp):
CTGCTGCTGACCACCAGCTC
Found at i:10103630 original size:3 final size:3
Alignment explanation
Indices: 10103608--10103663 Score: 51
Period size: 3 Copynumber: 18.3 Consensus size: 3
10103598 GCTAAAACAT
* * * *
10103608 TAA TAA CTAT TAA T-A TAA TAA TAT TAA TAA TAA TAA CAA TAA TTAG
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
10103654 TAA TAA TAA T
1 TAA TAA TAA T
10103664 GCTAGTAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
2 2 0.05
3 36 0.86
4 4 0.10
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:10104704 original size:162 final size:161
Alignment explanation
Indices: 10104515--10104862 Score: 434
Period size: 162 Copynumber: 2.1 Consensus size: 161
10104505 AATTTTAATT
* * * * *
10104515 GGTTTATAATTTAGTCATTTGACTGTTTGACTGTACCATAGGCTGCCACGTGTCACTTTTTTGGA
1 GGTTTATAAATTAGTCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCA-ATTTTTGGA
* * *
10104580 TTATTTATGCATTTAGTCCTTTTTATTTTTAATTTGCTTTAATTTAATGCC-AAATCAAC-TTTA
65 TTATTTATGCATTTAGTCCCTTCTATTTTTAATTTACTTTAATTTAAT-CCTAAATCAACTTTTA
*
10104643 TTTTAATTACGAAATTGGCCCAATA-ATTTTTCAA
129 -TTTAATTACAAAATTGGCCCAA-AGATTTTTCAA
* * *
10104677 GGTTTATAAACTAGTCCTTTGACTGTTTGACTGCACCAGAGGTTGCCACGTGTCAATTTTTGGCT
1 GGTTTATAAATTAGTCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCAATTTTTGGAT
* * * * *
10104742 TATTTCTGCATTTAGTCCCTTCTATTTTTAATTTATTTTTATTTAGTCCTTAAATTAACTTTTAT
66 TATTTATGCATTTAGTCCCTTCTATTTTTAATTTACTTTAATTTAATCC-TAAATCAACTTTTAT
*
10104807 TTAATTACAAAATTGGTCCAAAGATTTTTCAA
130 TTAATTACAAAATTGGCCCAAAGATTTTTCAA
* *
10104839 GATTT-TAAAATTAGTCCCTTGACT
1 GGTTTAT-AAATTAGTCCTTTGACT
10104863 TCTGGATGCC
Statistics
Matches: 160, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
160 2 0.01
161 50 0.31
162 104 0.65
163 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.46
Consensus pattern (161 bp):
GGTTTATAAATTAGTCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCAATTTTTGGAT
TATTTATGCATTTAGTCCCTTCTATTTTTAATTTACTTTAATTTAATCCTAAATCAACTTTTATT
TAATTACAAAATTGGCCCAAAGATTTTTCAA
Found at i:10104989 original size:30 final size:30
Alignment explanation
Indices: 10104932--10105248 Score: 397
Period size: 30 Copynumber: 10.5 Consensus size: 30
10104922 CCCTAAATTG
* * **
10104932 TCCAGAAATTACCTTTTAACCAAAAAACTTT
1 TCCA-AAATTACATTTTGACCCCAAAACTTT
* * *
10104963 TCCATAATTATATTTTGACCCTAAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
* *
10104993 TCTAAAATTACATTTTGACCCCGAAAC-TT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
**
10105022 TCTCAAAATTACATTTTGACCTAAAAACTTT
1 TC-CAAAATTACATTTTGACCCCAAAACTTT
* *
10105053 TCCAAAATTATATTTTGACCCTAAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
*
10105083 TCCAAAATTACATTTTGACCCCGAAAC-TT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
*
10105112 TCTCAAAATTACATTTTAACCCCAAAACTTT
1 TC-CAAAATTACATTTTGACCCCAAAACTTT
* *
10105143 TCCAAAATTACATTTTGACCTCAAAATTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
10105173 TCCAAAATTACATTTTGACCCCAAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
* *
10105203 CCCAAAATTACATTTCGACCCCAAAAC-TT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
*
10105232 TCAAAAATTATCATTTT
1 TCCAAAATTA-CATTTT
10105249 TTCCCCGAAT
Statistics
Matches: 248, Mismatches: 33, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
29 18 0.07
30 218 0.88
31 12 0.05
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.36
Consensus pattern (30 bp):
TCCAAAATTACATTTTGACCCCAAAACTTT
Found at i:10105090 original size:90 final size:90
Alignment explanation
Indices: 10104937--10105248 Score: 457
Period size: 90 Copynumber: 3.5 Consensus size: 90
10104927 AATTGTCCAG
* * * *
10104937 AAATTACCTTTTAACCAAAAAACTTTTCCATAATTATATTTTGACCCTAAAACTTTTCTAAAATT
1 AAATTACATTTTAACCCAAAAACTTTTCCAAAATTATATTTTGACCCTAAAACTTTTCCAAAATT
10105002 ACATTTTGACCCCGAAACTTTCTCA
66 ACATTTTGACCCCGAAACTTTCTCA
* *
10105027 AAATTACATTTTGACCTAAAAACTTTTCCAAAATTATATTTTGACCCTAAAACTTTTCCAAAATT
1 AAATTACATTTTAACCCAAAAACTTTTCCAAAATTATATTTTGACCCTAAAACTTTTCCAAAATT
10105092 ACATTTTGACCCCGAAACTTTCTCA
66 ACATTTTGACCCCGAAACTTTCTCA
* * *
10105117 AAATTACATTTTAACCCCAAAACTTTTCCAAAATTACATTTTGA-CCTCAAAATTTTTCCAAAAT
1 AAATTACATTTTAACCCAAAAACTTTTCCAAAATTATATTTTGACCCT-AAAACTTTTCCAAAAT
* *
10105181 TACATTTTGACCCCAAAACTTTCCCA
65 TACATTTTGACCCCGAAACTTTCTCA
** * *
10105207 AAATTACATTTCGACCCCAAAAC-TTTCAAAAATTATCATTTT
1 AAATTACATTTTAACCCAAAAACTTTTCCAAAATTAT-ATTTT
10105249 TTCCCCGAAT
Statistics
Matches: 204, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
89 14 0.07
90 190 0.93
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.36
Consensus pattern (90 bp):
AAATTACATTTTAACCCAAAAACTTTTCCAAAATTATATTTTGACCCTAAAACTTTTCCAAAATT
ACATTTTGACCCCGAAACTTTCTCA
Found at i:10105283 original size:29 final size:29
Alignment explanation
Indices: 10105243--10105399 Score: 99
Period size: 29 Copynumber: 5.4 Consensus size: 29
10105233 CAAAAATTAT
* *
10105243 CATTTTT-TCCCCGAATCTTTTAAAATTC
1 CATTTTTAACCCCGAATCTTCTAAAATTC
* ** *
10105271 CATTTTTAACCCCGATTTCACCGAAAATTAC
1 CATTTTTAACCCCGA-ATCTTCTAAAATT-C
* *
10105302 CA-TTTTACCCCCGAAGCTTCTAAAATTC
1 CATTTTTAACCCCGAATCTTCTAAAATTC
* * * * *
10105330 CGTTTTTAACCTCGATTAC-ACCAAAATTAC
1 CATTTTTAACCCCGAAT-CTTCTAAAATT-C
* *
10105360 CA-TTTT-ACCCTCGAATCTTTTAAAATTT
1 CATTTTTAACCC-CGAATCTTCTAAAATTC
10105388 CATTTTTAACCC
1 CATTTTTAACCC
10105400 TGATTACACC
Statistics
Matches: 93, Mismatches: 26, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
28 15 0.16
29 49 0.53
30 26 0.28
31 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.05, T:0.38
Consensus pattern (29 bp):
CATTTTTAACCCCGAATCTTCTAAAATTC
Found at i:10105298 original size:59 final size:58
Alignment explanation
Indices: 10105235--10105423 Score: 256
Period size: 58 Copynumber: 3.2 Consensus size: 58
10105225 AAAACTTTCA
* * *
10105235 AAAATTATCATTTTTTCCCCGAATCTTTTAAAATTCCATTTTTAACCCCGATTTCACC
1 AAAATTACCATTTTTACCCCGAATCTTTTAAAATTCCATTTTTAACCCCGATTACACC
* * * *
10105293 GAAAATTACCA-TTTTACCCCCGAAGCTTCTAAAATTCCGTTTTTAACCTCGATTACACC
1 -AAAATTACCATTTTTA-CCCCGAATCTTTTAAAATTCCATTTTTAACCCCGATTACACC
* *
10105352 AAAATTACCA-TTTTACCCTCGAATCTTTTAAAATTTCATTTTTAACCCTGATTACACC
1 AAAATTACCATTTTTACCC-CGAATCTTTTAAAATTCCATTTTTAACCCCGATTACACC
10105410 AAAATTACCATTTT
1 AAAATTACCATTTT
10105424 GCCCCCGGGT
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
57 3 0.03
58 62 0.54
59 49 0.43
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (58 bp):
AAAATTACCATTTTTACCCCGAATCTTTTAAAATTCCATTTTTAACCCCGATTACACC
Found at i:10105308 original size:30 final size:28
Alignment explanation
Indices: 10105264--10105423 Score: 85
Period size: 29 Copynumber: 5.5 Consensus size: 28
10105254 CGAATCTTTT
*
10105264 AAAATTCCATTTTTAACCCCGATTTCACC
1 AAAATTCCA-TTTTAACCCCGATTACACC
* * *
10105293 GAAAATTACCATTTTACCCCCGA--AGCTTCT
1 -AAAATT-CCATTTTAACCCCGATTA-C-ACC
* *
10105323 AAAATTCCGTTTTTAACCTCGATTACACC
1 AAAATTCC-ATTTTAACCCCGATTACACC
* ***
10105352 AAAATTACCATTTT-ACCCTCGAAT-CTTTT
1 AAAATT-CCATTTTAACCC-CGATTAC-ACC
* *
10105381 AAAATTTCATTTTTAACCCTGATTACACC
1 AAAATTCCA-TTTTAACCCCGATTACACC
10105410 AAAATTACCATTTT
1 AAAATT-CCATTTT
10105424 GCCCCCGGGT
Statistics
Matches: 95, Mismatches: 22, Indels: 27
0.66 0.15 0.19
Matches are distributed among these distances:
28 8 0.08
29 55 0.58
30 28 0.29
31 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (28 bp):
AAAATTCCATTTTAACCCCGATTACACC
Found at i:10105452 original size:58 final size:58
Alignment explanation
Indices: 10105265--10105462 Score: 188
Period size: 58 Copynumber: 3.4 Consensus size: 58
10105255 GAATCTTTTA
* * *
10105265 AAATTCCATTTTTAACCCCGATTTCACCGAAAATTACCATTTTACCCCCGAAGCT-TCTA-
1 AAATTCCGTTTTTAACCCCGATTACACC-AAAATTACCATTTTACCCCCG--GGTATCTAT
* * * *
10105324 AAATTCCGTTTTTAACCTCGATTACACCAAAATTACCATTTTACCCTC--GAATCTTTT
1 AAATTCCGTTTTTAACCCCGATTACACCAAAATTACCATTTTACCCCCGGGTATC-TAT
* * * * *
10105381 AAAATTTCATTTTTAACCCTGATTACACCAAAATTACCATTTTGCCCCCGGGTATCCAT
1 -AAATTCCGTTTTTAACCCCGATTACACCAAAATTACCATTTTACCCCCGGGTATCTAT
* * *
10105440 AAGTCCCGTTTTTCACCCCGATT
1 AAATTCCGTTTTTAACCCCGATT
10105463 TCATCATTTA
Statistics
Matches: 111, Mismatches: 22, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
55 2 0.02
56 1 0.01
58 78 0.70
59 26 0.23
60 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.35
Consensus pattern (58 bp):
AAATTCCGTTTTTAACCCCGATTACACCAAAATTACCATTTTACCCCCGGGTATCTAT
Found at i:10107132 original size:18 final size:18
Alignment explanation
Indices: 10107097--10107134 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
10107087 TGAATTTTCG
*
10107097 AATTCGAATAACTTGAAT
1 AATTCGAATAACTCGAAT
10107115 AATTCGAATAAAC-CGAAT
1 AATTCGAAT-AACTCGAAT
10107133 AA
1 AA
10107135 AATTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.50, C:0.13, G:0.11, T:0.26
Consensus pattern (18 bp):
AATTCGAATAACTCGAAT
Found at i:10110351 original size:16 final size:16
Alignment explanation
Indices: 10110332--10110384 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
10110322 TAATAGGACG
*
10110332 GTAATGGAATAGAGCT
1 GTAATTGAATAGAGCT
* *
10110348 GTAATTGAAAAGAGTT
1 GTAATTGAATAGAGCT
*
10110364 GTAATTGAATAGAACT
1 GTAATTGAATAGAGCT
10110380 GTAAT
1 GTAAT
10110385 AAGTAATTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.30
Consensus pattern (16 bp):
GTAATTGAATAGAGCT
Found at i:10110625 original size:24 final size:23
Alignment explanation
Indices: 10110582--10110667 Score: 75
Period size: 24 Copynumber: 3.6 Consensus size: 23
10110572 ATGAATAAAT
*
10110582 TTAATTATATTTTAATATAATTATTA
1 TTAAATATATTTTAATA-AA--ATTA
*
10110608 TTAAATATATTTTAATAAAAATA
1 TTAAATATATTTTAATAAAATTA
* * *
10110631 ATAATATATAATTTAATAACATTA
1 TTAA-ATATATTTTAATAAAATTA
10110655 TT-AATATAATTTT
1 TTAAATAT-ATTTT
10110668 TTATATTAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
22 4 0.08
23 11 0.22
24 17 0.34
25 2 0.04
26 16 0.32
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAAATATATTTTAATAAAATTA
Found at i:10110675 original size:65 final size:65
Alignment explanation
Indices: 10110551--10110684 Score: 152
Period size: 62 Copynumber: 2.0 Consensus size: 65
10110541 TTGTTATTAA
* *
10110551 ATTTTAATAAGATTAATAATAATGAATAAATTTAATTATATTTTAATATAATTATTATTAAA-TA
1 ATTTTAATAAGA-TAATAATAATGAATAAATTTAATAACATTTTAATATAATTATTATTAAACTA
10110615 T
65 T
*
10110616 ATTTTAATAA-A-AATAATAAT--ATATAATTTAATAACATTATTAATATAATTTTTTATATTAA
1 ATTTTAATAAGATAATAATAATGAATA-AATTTAATAACATT-TTAATATAA--TTAT-TATTAA
10110677 ACTAT
61 ACTAT
10110682 ATT
1 ATT
10110685 AAAAGATTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
60 3 0.05
61 12 0.20
62 18 0.30
64 4 0.07
65 17 0.28
66 6 0.10
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (65 bp):
ATTTTAATAAGATAATAATAATGAATAAATTTAATAACATTTTAATATAATTATTATTAAACTAT
Found at i:10119674 original size:4 final size:4
Alignment explanation
Indices: 10119665--10119694 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
10119655 TGACGAGGCT
10119665 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
10119695 CGTACTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:10121321 original size:30 final size:29
Alignment explanation
Indices: 10121278--10121335 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
10121268 AACTAACTAT
* *
10121278 TTAAAATTAAATAATTTAATAATATTTTC
1 TTAAAATCAAATAATTAAATAATATTTTC
10121307 TTAAAATCATAATAATTAAATAATATTTT
1 TTAAAATCA-AATAATTAAATAATATTTT
10121336 TTATTATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TTAAAATCAAATAATTAAATAATATTTTC
Found at i:10121459 original size:28 final size:27
Alignment explanation
Indices: 10121417--10121472 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
10121407 TGAATAAAGA
*
10121417 ATTTAGAATTTAGAATAAAAAATCGAG
1 ATTTAGAATTGAGAATAAAAAATCGAG
*
10121444 ATTTGAGAATTGAGAATAAGAAATCGAG
1 ATTT-AGAATTGAGAATAAAAAATCGAG
10121472 A
1 A
10121473 AAAATAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.50, C:0.04, G:0.20, T:0.27
Consensus pattern (27 bp):
ATTTAGAATTGAGAATAAAAAATCGAG
Found at i:10128186 original size:20 final size:20
Alignment explanation
Indices: 10128160--10128226 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 20
10128150 CAAAATAAAC
10128160 CAAAATAATTTTTAAAAATT
1 CAAAATAATTTTTAAAAATT
* *
10128180 GAAAATAAATTTT--AAATT
1 CAAAATAATTTTTAAAAATT
*
10128198 CAAAAT-ATTTATAAAAATT
1 CAAAATAATTTTTAAAAATT
*
10128217 CTAAA-AATTT
1 CAAAATAATTT
10128227 GTATTTTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
17 4 0.11
18 10 0.26
19 13 0.34
20 11 0.29
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.39
Consensus pattern (20 bp):
CAAAATAATTTTTAAAAATT
Found at i:10129003 original size:2 final size:2
Alignment explanation
Indices: 10128996--10129032 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10128986 TCAATCTTTG
10128996 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10129033 TCTTTTACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10139017 original size:14 final size:14
Alignment explanation
Indices: 10138998--10139024 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10138988 TTTGCTCTTT
10138998 GATCTAATGTATAA
1 GATCTAATGTATAA
10139012 GATCTAATGTATA
1 GATCTAATGTATA
10139025 GGGGTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (14 bp):
GATCTAATGTATAA
Found at i:10139169 original size:89 final size:88
Alignment explanation
Indices: 10139007--10139185 Score: 322
Period size: 89 Copynumber: 2.0 Consensus size: 88
10138997 TGATCTAATG
* *
10139007 TATAAGATCTAATGTATAGGGGTAAATTTGCTCATTTTTTAGTAGAGGGAGGCAAAATGCAATCT
1 TATAAGATCTAATGTATAGGGGTAAATTTACTCATTTTTTAGTAGAGGGAGGCAAAATACAATCT
*
10139072 CACTCCTACTATAAGGACCTCCA
66 CACTCCTACTACAAGGACCTCCA
10139095 TATAAGATCTAATGTATAGGGGTAAATTTACTCATTTTTTTAGTAGAGGGAGGCAAAATACAATC
1 TATAAGATCTAATGTATAGGGGTAAATTTACTCA-TTTTTTAGTAGAGGGAGGCAAAATACAATC
10139160 TCACTCCTACTACAAGGACCTCCA
65 TCACTCCTACTACAAGGACCTCCA
10139184 TA
1 TA
10139186 ATATTTTTAC
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
88 33 0.38
89 54 0.62
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (88 bp):
TATAAGATCTAATGTATAGGGGTAAATTTACTCATTTTTTAGTAGAGGGAGGCAAAATACAATCT
CACTCCTACTACAAGGACCTCCA
Found at i:10140203 original size:5 final size:5
Alignment explanation
Indices: 10140195--10140242 Score: 71
Period size: 5 Copynumber: 9.8 Consensus size: 5
10140185 AGAAAGGGAA
* *
10140195 GATTG GATT- GATTG AATTG AATTG GATTG GATTG GATTG GATTG GATT
1 GATTG GATTG GATTG GATTG GATTG GATTG GATTG GATTG GATTG GATT
10140243 TTCAATGTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
4 4 0.10
5 36 0.90
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (5 bp):
GATTG
Found at i:10140980 original size:18 final size:18
Alignment explanation
Indices: 10140936--10140986 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
10140926 TTAAAAGATG
*
10140936 ATTATATAAAAATT-TTCA
1 ATTAT-TAAAAATTATTAA
* *
10140954 ATAAATAAAAATTATTAA
1 ATTATTAAAAATTATTAA
*
10140972 ATTATTAAATATTAT
1 ATTATTAAAAATTAT
10140987 AATAAAACAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTATTAAAAATTATTAA
Found at i:10149860 original size:5 final size:5
Alignment explanation
Indices: 10149850--10149874 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
10149840 GCAGCACATT
10149850 TTTTG TTTTG TTTTG TTTTG TTTTG
1 TTTTG TTTTG TTTTG TTTTG TTTTG
10149875 AAGGAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (5 bp):
TTTTG
Found at i:10151847 original size:6 final size:6
Alignment explanation
Indices: 10151833--10151864 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
10151823 TTCCTCACTT
*
10151833 CCTTCG CCTTTG CCTTTG CCTTTG CCTTTG CC
1 CCTTTG CCTTTG CCTTTG CCTTTG CCTTTG CC
10151865 GCCGTTAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.41, G:0.16, T:0.44
Consensus pattern (6 bp):
CCTTTG
Found at i:10158976 original size:20 final size:20
Alignment explanation
Indices: 10158951--10158988 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10158941 GGAATTTATG
10158951 TTTTAATTTAATATTTAATT
1 TTTTAATTTAATATTTAATT
*
10158971 TTTTAATTTAGTATTTAA
1 TTTTAATTTAATATTTAA
10158989 ATTTAGTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTAATTTAATATTTAATT
Found at i:10159764 original size:40 final size:43
Alignment explanation
Indices: 10159687--10159776 Score: 114
Period size: 41 Copynumber: 2.1 Consensus size: 43
10159677 ATAAAAATTT
**
10159687 AAATAACCCTAAATCCCAAACAATAGCAATCAAAATCC-AATCA
1 AAATAACCCTAAAT-CCAAACAATAAAAATCAAAATCCAAATCA
* *
10159730 AAATAACCCTGAAT-CAAA-AATAAAAATCATAATCCAAATCA
1 AAATAACCCTAAATCCAAACAATAAAAATCAAAATCCAAATCA
10159771 AAATAA
1 AAATAA
10159777 AATAAACCCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 14 0.33
41 15 0.36
43 13 0.31
ACGTcount: A:0.58, C:0.22, G:0.02, T:0.18
Consensus pattern (43 bp):
AAATAACCCTAAATCCAAACAATAAAAATCAAAATCCAAATCA
Found at i:10166833 original size:38 final size:38
Alignment explanation
Indices: 10166789--10166864 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
10166779 TCGATATGAA
*
10166789 ACAATTATAGTAATTATTTTATTCATCCTGCTT-ACCAT
1 ACAATTATAGTAATTATTTTATTCACCCTG-TTCACCAT
*
10166827 ACAATTATGGTAATTATTTTATTCACCCTGTTCACCAT
1 ACAATTATAGTAATTATTTTATTCACCCTGTTCACCAT
10166865 GTTAGATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 2 0.06
38 33 0.94
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (38 bp):
ACAATTATAGTAATTATTTTATTCACCCTGTTCACCAT
Found at i:10171759 original size:20 final size:20
Alignment explanation
Indices: 10171722--10171760 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10171712 AAGAGTTTTA
*
10171722 ATTTTTATACATTTAATTAC
1 ATTTTTATACATTCAATTAC
10171742 ATTTTTATAC-TCTCAATTA
1 ATTTTTATACAT-TCAATTA
10171761 AAAAAATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTTATACATTCAATTAC
Found at i:10172005 original size:17 final size:18
Alignment explanation
Indices: 10171985--10172018 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10171975 TTAAATGATT
*
10171985 GAATGAATT-AATATTAC
1 GAATCAATTAAATATTAC
10172002 GAATCAATTAAATATTA
1 GAATCAATTAAATATTA
10172019 GAAAATTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (18 bp):
GAATCAATTAAATATTAC
Found at i:10174026 original size:23 final size:22
Alignment explanation
Indices: 10173979--10174026 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
10173969 TAATAAATTT
10173979 AAATTTAAATTTAAAACATAAA
1 AAATTTAAATTTAAAACATAAA
*
10174001 AAATTATAATATTT-AAATATAAA
1 AAATT-TAA-ATTTAAAACATAAA
10174024 AAA
1 AAA
10174027 CACTTTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 14 0.61
24 4 0.17
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATTTAAATTTAAAACATAAA
Found at i:10174270 original size:19 final size:20
Alignment explanation
Indices: 10174227--10174262 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
10174217 TTATAAAATT
10174227 TAAAAAGTCAAAATAATATA
1 TAAAAAGTCAAAATAATATA
10174247 T-AAAAGT-AAAA-AATAT
1 TAAAAAGTCAAAATAATAT
10174263 TGTAAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 6 0.38
20 1 0.06
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.25
Consensus pattern (20 bp):
TAAAAAGTCAAAATAATATA
Found at i:10174302 original size:12 final size:14
Alignment explanation
Indices: 10174275--10174312 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
10174265 TAAAAATGAA
10174275 TTATATATTAATTT
1 TTATATATTAATTT
10174289 TTATATATT-ATTT
1 TTATATATTAATTT
* *
10174302 TGATTTATTAA
1 TTATATATTAA
10174313 AATATATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (14 bp):
TTATATATTAATTT
Found at i:10177580 original size:29 final size:29
Alignment explanation
Indices: 10177506--10177797 Score: 194
Period size: 29 Copynumber: 9.9 Consensus size: 29
10177496 AGTAGTCCCC
* * * *
10177506 AAACTTTCCCAAAATCATATTTTAATCCCC
1 AAACTTTCCTAAAATTACATTTTAA-CCCT
* * * *
10177536 AAAGTTTTCTAAAATTGCATTTTAGCCCT
1 AAACTTTCCTAAAATTACATTTTAACCCT
*
10177565 AAACTTTCCTAAAATTACATTTTGACCCCT
1 AAACTTTCCTAAAATTACATTTT-AACCCT
10177595 AAACTTATCC-AAAATTACATTTTAACCCAT
1 AAACTT-TCCTAAAATTACATTTTAACCC-T
* *
10177625 AAACTTT-CTAAAATCATATTTTAACCCT
1 AAACTTTCCTAAAATTACATTTTAACCCT
* * * *
10177653 AAAATTTTCC-AAAATTGCATTCTAACCTT
1 -AAACTTTCCTAAAATTACATTTTAACCCT
* * * * *
10177682 CGAACTTTCCCAAAGTCATATTTTAACCCT
1 -AAACTTTCCTAAAATTACATTTTAACCCT
* ** * *
10177712 AAACTTTTCTAAAACAATATTTTGACCCT
1 AAACTTTCCTAAAATTACATTTTAACCCT
* * * * * *
10177741 CAAACTTCCCCAAAATCATATTTTGACCCC
1 -AAACTTTCCTAAAATTACATTTTAACCCT
* **
10177771 AAACTTTTCTAAAATTATGTTTTAACC
1 AAACTTTCCTAAAATTACATTTTAACC
10177798 TCGAAATCTT
Statistics
Matches: 205, Mismatches: 49, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
28 2 0.01
29 114 0.56
30 86 0.42
31 3 0.01
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36
Consensus pattern (29 bp):
AAACTTTCCTAAAATTACATTTTAACCCT
Found at i:10177609 original size:59 final size:59
Alignment explanation
Indices: 10177506--10177786 Score: 223
Period size: 59 Copynumber: 4.8 Consensus size: 59
10177496 AGTAGTCCCC
* * * *
10177506 AAACTTTCCCAAAATCATATTTTAATCCCC-AAAGTTTTCTAAAATTGCATTTTAGCCC-T
1 AAACTTTCCTAAAATCATATTTT-A-CCCCTAAAATTTTCCAAAATTGCATTTTAACCCAT
* * * * *
10177565 AAACTTTCCTAAAATTACATTTTGACCCCTAAACTTATCCAAAATTACATTTTAACCCAT
1 AAACTTTCCTAAAATCATATTTT-ACCCCTAAAATTTTCCAAAATTGCATTTTAACCCAT
* * *
10177625 AAACTTT-CTAAAATCATATTTTAACCCTAAAATTTTCCAAAATTGCATTCTAA-CCTT
1 AAACTTTCCTAAAATCATATTTTACCCCTAAAATTTTCCAAAATTGCATTTTAACCCAT
* * * * * * **** *
10177682 CGAACTTTCCCAAAGTCATATTTTAACCCTAAACTTTTCTAAAACAATATTTTGACCC-T
1 -AAACTTTCCTAAAATCATATTTTACCCCTAAAATTTTCCAAAATTGCATTTTAACCCAT
* * * *
10177741 CAAACTTCCCCAAAATCATATTTTGACCCC-AAACTTTTCTAAAATT
1 -AAACTTTCCTAAAATCATATTTT-ACCCCTAAAATTTTCCAAAATT
10177787 ATGTTTTAAC
Statistics
Matches: 182, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
57 3 0.02
58 36 0.20
59 129 0.71
60 14 0.08
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (59 bp):
AAACTTTCCTAAAATCATATTTTACCCCTAAAATTTTCCAAAATTGCATTTTAACCCAT
Found at i:10180066 original size:22 final size:22
Alignment explanation
Indices: 10180041--10180098 Score: 55
Period size: 26 Copynumber: 2.5 Consensus size: 22
10180031 AAAATATTAA
10180041 GATAAATAATAGTTATATTTAT
1 GATAAATAATAGTTATATTTAT
*
10180063 GATAATTAAATAATATTTATATTTAT
1 G---A-TAAATAATAGTTATATTTAT
*
10180089 GGT-AATAATA
1 GATAAATAATA
10180099 TATGATTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
21 7 0.23
22 2 0.07
25 1 0.03
26 20 0.67
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (22 bp):
GATAAATAATAGTTATATTTAT
Found at i:10180106 original size:26 final size:26
Alignment explanation
Indices: 10180043--10180094 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10180033 AATATTAAGA
*
10180043 TAAATAATAGTTATATTTATGATAAT
1 TAAATAATATTTATATTTATGATAAT
*
10180069 TAAATAATATTTATATTTATGGTAAT
1 TAAATAATATTTATATTTATGATAAT
10180095 AATATATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (26 bp):
TAAATAATATTTATATTTATGATAAT
Found at i:10203589 original size:30 final size:30
Alignment explanation
Indices: 10203485--10203591 Score: 78
Period size: 30 Copynumber: 3.4 Consensus size: 30
10203475 TTAATGACTA
* *
10203485 TATTTAAATATTTAAAATATAGTTTATA-TAAT
1 TATTAAAATATTT-AAATA-A-TTAATATTAAT
10203517 CTAATTAAAAT-TTTAAATAATTAATATTAAT
1 -T-ATTAAAATATTTAAATAATTAATATTAAT
*
10203548 TACTTAGAAATATTT-AA-AATTAATATTTCAT
1 TA-TTA-AAATATTTAAATAATTAATA-TTAAT
10203579 ATATTAAAATATT
1 -TATTAAAATATT
10203592 AACAATAAGT
Statistics
Matches: 64, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
29 1 0.02
30 24 0.38
31 18 0.28
32 10 0.16
33 4 0.06
34 7 0.11
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.47
Consensus pattern (30 bp):
TATTAAAATATTTAAATAATTAATATTAAT
Found at i:10203784 original size:13 final size:13
Alignment explanation
Indices: 10203767--10203830 Score: 51
Period size: 13 Copynumber: 5.0 Consensus size: 13
10203757 TCTTTAACCA
*
10203767 AACTTTTTAAAAG
1 AACTTTTCAAAAG
* *
10203780 TACTTCTCAAAAG
1 AACTTTTCAAAAG
**
10203793 AACTTTTCCACCA-
1 AACTTTT-CAAAAG
*
10203806 AACTTTTTAAAAG
1 AACTTTTCAAAAG
10203819 AAC-TTTCAAAAG
1 AACTTTTCAAAAG
10203831 CAATGCTAAA
Statistics
Matches: 38, Mismatches: 11, Indels: 5
0.70 0.20 0.09
Matches are distributed among these distances:
12 10 0.26
13 25 0.66
14 3 0.08
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33
Consensus pattern (13 bp):
AACTTTTCAAAAG
Found at i:10205317 original size:40 final size:39
Alignment explanation
Indices: 10205235--10205319 Score: 93
Period size: 41 Copynumber: 2.2 Consensus size: 39
10205225 GGCTAGCCTG
** *
10205235 AATTTAATT-TAAATAATAAAAAATATTTTTAAAATTTA
1 AATTTAATTATAAATAATAAAAAATATAATTAAAATATA
10205273 AATTTAATTATAAA-AATACATAAAATATCAATTAAAATATA
1 AATTTAATTATAAATAATA-A-AAAATAT-AATTAAAATATA
*
10205314 ATTTTA
1 AATTTA
10205320 TTACTTTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
38 13 0.33
39 5 0.13
40 7 0.18
41 14 0.36
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (39 bp):
AATTTAATTATAAATAATAAAAAATATAATTAAAATATA
Found at i:10206026 original size:30 final size:29
Alignment explanation
Indices: 10205992--10206050 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
10205982 GCGATTTGTG
*
10205992 AAAATTGAATC-AAATTAAAATTTCATATAT
1 AAAATTGAA-CAAAATCAAAA-TTCATATAT
*
10206022 AAAATTGCACAAAATCAAAATTCATATAT
1 AAAATTGAACAAAATCAAAATTCATATAT
10206051 GACATTACTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.32
Consensus pattern (29 bp):
AAAATTGAACAAAATCAAAATTCATATAT
Found at i:10206244 original size:14 final size:14
Alignment explanation
Indices: 10206225--10206263 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
10206215 TTGTTTGACT
*
10206225 GAAAATAATTTTTG
1 GAAAATAATTTCTG
10206239 GAAAATAATTTCTG
1 GAAAATAATTTCTG
*
10206253 AAAAATGAATT
1 GAAAAT-AATT
10206264 ACTTTTCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (14 bp):
GAAAATAATTTCTG
Found at i:10206290 original size:19 final size:18
Alignment explanation
Indices: 10206242--10206291 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 18
10206232 ATTTTTGGAA
*
10206242 AATAATTTCTGAAAAATG
1 AATATTTTCTGAAAAATG
*
10206260 AATTACTTTTCTAGAAAAATT
1 AA-TA-TTTTCT-GAAAAATG
10206281 AATATTTTCTG
1 AATATTTTCTG
10206292 GTGTTTAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 3 0.11
19 8 0.30
20 7 0.26
21 9 0.33
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (18 bp):
AATATTTTCTGAAAAATG
Found at i:10211420 original size:31 final size:29
Alignment explanation
Indices: 10211375--10211439 Score: 76
Period size: 31 Copynumber: 2.2 Consensus size: 29
10211365 AAATAAATGG
* * *
10211375 TTAATATTTTATTTGGTATTTAAATTTGATT
1 TTAACATTTAATTTGATATTTAAATTT--TT
*
10211406 TTAACATTTAATTTGATATTTCAATTTTT
1 TTAACATTTAATTTGATATTTAAATTTTT
10211435 TTAAC
1 TTAAC
10211440 TCACTGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 7 0.23
31 23 0.77
ACGTcount: A:0.31, C:0.05, G:0.06, T:0.58
Consensus pattern (29 bp):
TTAACATTTAATTTGATATTTAAATTTTT
Found at i:10212153 original size:24 final size:24
Alignment explanation
Indices: 10212125--10212187 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
10212115 AGAAATAATC
*
10212125 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAGTTAAACTCTGTTTATCTG
*
10212149 TTTCAATTAAACTCTGTTTATCTG
1 TTTCAGTTAAACTCTGTTTATCTG
* *
10212173 TTTGAGTCAAACTCT
1 TTTCAGTTAAACTCT
10212188 TATTACTCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.49
Consensus pattern (24 bp):
TTTCAGTTAAACTCTGTTTATCTG
Found at i:10214138 original size:24 final size:24
Alignment explanation
Indices: 10214110--10214172 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
10214100 AAAAATAATT
*
10214110 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAGTTAAACTCTGTTTATTTA
*
10214134 TTTCAATTAAACTCTGTTTATTTA
1 TTTCAGTTAAACTCTGTTTATTTA
* *
10214158 TTTGAGTCAAACTCT
1 TTTCAGTTAAACTCT
10214173 TATTACTCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.25, C:0.14, G:0.10, T:0.51
Consensus pattern (24 bp):
TTTCAGTTAAACTCTGTTTATTTA
Found at i:10224199 original size:2 final size:2
Alignment explanation
Indices: 10224192--10224221 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10224182 TGTAAGACTT
10224192 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
10224222 TATGTATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10228014 original size:37 final size:37
Alignment explanation
Indices: 10227964--10228047 Score: 159
Period size: 37 Copynumber: 2.3 Consensus size: 37
10227954 ACATGATTAA
10227964 AGCAAATTACCAACTATATTTATTAGTTATACGAAAT
1 AGCAAATTACCAACTATATTTATTAGTTATACGAAAT
*
10228001 AGCAAATTACCAACTATATTTATTAGTTATATGAAAT
1 AGCAAATTACCAACTATATTTATTAGTTATACGAAAT
10228038 AGCAAATTAC
1 AGCAAATTAC
10228048 TTTTTGACTG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (37 bp):
AGCAAATTACCAACTATATTTATTAGTTATACGAAAT
Found at i:10228680 original size:145 final size:145
Alignment explanation
Indices: 10228424--10228717 Score: 543
Period size: 145 Copynumber: 2.0 Consensus size: 145
10228414 AAAGAGGAAA
* *
10228424 AAATAAAGCACCTTGACATAAAATGTTTATCGAAAAAGATGACATTTGGTTTCGTAAAGTGTTAT
1 AAATAAAGCACCTTGACATAAAATGTTTACCGAAAAAGATGACATTTAGTTTCGTAAAGTGTTAT
10228489 GTACCGAATAGGATAATTCCAATCATAAACACAATAATTAATAAATGTAGAATACCTTTTGGTTA
66 GTACCGAATAGGATAATTCCAATCATAAACACAATAATTAATAAATGTAGAATACCTTTTGGTTA
10228554 GGAAGTTTGAGGATC
131 GGAAGTTTGAGGATC
10228569 AAATAAAGCACCTTGACATAAAATGTTTACCGAAAAAGATGACATTTAGTTTCGTAAAGTGTTAT
1 AAATAAAGCACCTTGACATAAAATGTTTACCGAAAAAGATGACATTTAGTTTCGTAAAGTGTTAT
* * *
10228634 GTACTGAATAGTATAATTCCAATCATAAACACAATAATTAATAAATGTAGAATGCCTTTTGGTTA
66 GTACCGAATAGGATAATTCCAATCATAAACACAATAATTAATAAATGTAGAATACCTTTTGGTTA
10228699 GGAAGTTTGAGGATC
131 GGAAGTTTGAGGATC
10228714 AAAT
1 AAAT
10228718 TAATAGAATT
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 144 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (145 bp):
AAATAAAGCACCTTGACATAAAATGTTTACCGAAAAAGATGACATTTAGTTTCGTAAAGTGTTAT
GTACCGAATAGGATAATTCCAATCATAAACACAATAATTAATAAATGTAGAATACCTTTTGGTTA
GGAAGTTTGAGGATC
Found at i:10232754 original size:3 final size:3
Alignment explanation
Indices: 10232746--10232771 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10232736 AGGGGTTTTC
10232746 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
10232772 CACTGCTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:10236336 original size:2 final size:2
Alignment explanation
Indices: 10236329--10236353 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10236319 GAGTCTTGTT
10236329 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10236354 CCTTAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10236776 original size:2 final size:2
Alignment explanation
Indices: 10236771--10236809 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
10236761 TTTTCTGGTT
10236771 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10236810 TGAAAAAGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10240282 original size:12 final size:13
Alignment explanation
Indices: 10240265--10240293 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
10240255 TTTTCAATTT
10240265 TTTTATTTTTTA-
1 TTTTATTTTTTAC
10240277 TTTTATTTTTTAC
1 TTTTATTTTTTAC
10240290 TTTT
1 TTTT
10240294 TCCAACAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTATTTTTTAC
Found at i:10246027 original size:24 final size:24
Alignment explanation
Indices: 10246000--10246045 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
10245990 TATTATAATA
*
10246000 ATAAAATATAATAATA-GTAATATC
1 ATAAAAAATAA-AATATGTAATATC
10246024 ATAAAAAATAAAATATGTAATA
1 ATAAAAAATAAAATATGTAATA
10246046 AAATATTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
ATAAAAAATAAAATATGTAATATC
Found at i:10251896 original size:17 final size:17
Alignment explanation
Indices: 10251876--10251911 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
10251866 TTAAAAAATT
10251876 TAAAATT-CAAATATTTA
1 TAAAATTCCAAA-ATTTA
10251893 TAAAATTCCAAAATTTA
1 TAAAATTCCAAAATTTA
10251910 TA
1 TA
10251912 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAAATTCCAAAATTTA
Found at i:10251930 original size:25 final size:24
Alignment explanation
Indices: 10251864--10251930 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 24
10251854 TTTAAATTAA
10251864 TTTTAAAAAATTTAAAATTCAAAT
1 TTTTAAAAAATTTAAAATTCAAAT
* * * * *
10251888 ATTTATAAAATTCCAAAATTTATAT
1 TTTTAAAAAATT-TAAAATTCAAAT
10251913 TTTTAAAAAATTATAAAA
1 TTTTAAAAAATT-TAAAA
10251931 ATCTAAAAAT
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
24 10 0.30
25 23 0.70
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
TTTTAAAAAATTTAAAATTCAAAT
Found at i:10262547 original size:6 final size:6
Alignment explanation
Indices: 10262536--10262586 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
10262526 TGAGCAAAAT
* * *
10262536 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG
10262584 TGA
1 TGA
10262587 TATGAATTGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (6 bp):
TGAAAG
Found at i:10263961 original size:40 final size:38
Alignment explanation
Indices: 10263893--10264027 Score: 105
Period size: 40 Copynumber: 3.4 Consensus size: 38
10263883 TCCAGAATGG
* *
10263893 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAAAGTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAG-AATAAAGTGA
* *
10263933 CACCCAGTGTCTCATCGGCCTAGCCGAAG--TAAAGTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAATAAAGTGA
* * * *
10263970 TACCCAGTACCTCATCGAATCTATCCGAAGTAA-AATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAG-AATAA-AGTGA
*
10264011 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
10264028 ACTCGAAGTC
Statistics
Matches: 75, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
37 21 0.28
38 9 0.12
40 24 0.32
41 21 0.28
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAATAAAGTGA
Found at i:10264025 original size:41 final size:38
Alignment explanation
Indices: 10263925--10264028 Score: 111
Period size: 37 Copynumber: 2.7 Consensus size: 38
10263915 TTCGAAGCAA
*
10263925 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAGTGACACCCAGTGTCTCATCGAACCTAGCCGAAG
** ** * *
10263962 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAGTGACACCCAGTGTCTCATCGAACCTAGCCGAAG
10264000 TAAAATAGTGACACCCAGTGTCTCATCGA
1 T--AA-AGTGACACCCAGTGTCTCATCGA
10264029 CTCGAAGTCG
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
37 21 0.40
38 10 0.19
40 2 0.04
41 19 0.37
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (38 bp):
TAAAGTGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:10264325 original size:15 final size:15
Alignment explanation
Indices: 10264293--10264332 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
10264283 TATAATTAAC
10264293 CACATA-ATATTTCA
1 CACATATATATTTCA
* *
10264307 CACATATATTTTTCT
1 CACATATATATTTCA
10264322 CACATATATAT
1 CACATATATAT
10264333 CATTATATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (15 bp):
CACATATATATTTCA
Found at i:10268791 original size:5 final size:5
Alignment explanation
Indices: 10268781--10268808 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
10268771 TACCCACCTA
10268781 TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA
10268809 CGTTGGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:10279807 original size:3 final size:3
Alignment explanation
Indices: 10279799--10279826 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
10279789 TCATTATCTT
10279799 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
10279827 TGGTTTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:10283757 original size:31 final size:33
Alignment explanation
Indices: 10283716--10283780 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
10283706 CTTCGAGCTT
*
10283716 CTTAATTTGCACA-TTG-AAGCAATCATTTGAG
1 CTTAATTTGCACATTTGAAAGCAAGCATTTGAG
*
10283747 CTTATTTTGCACATTTGAAAAGCAAGCATTTGAG
1 CTTAATTTGCACATTTG-AAAGCAAGCATTTGAG
10283781 GGATAACTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 12 0.41
32 3 0.10
34 14 0.48
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (33 bp):
CTTAATTTGCACATTTGAAAGCAAGCATTTGAG
Found at i:10294113 original size:20 final size:21
Alignment explanation
Indices: 10294075--10294121 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
10294065 ATTTTAATAA
*
10294075 TTTTATAATTTTATTATGATT
1 TTTTATAATTTTATAATGATT
*
10294096 TTTTGTAATTTT-TAATGATT
1 TTTTATAATTTTATAATGATT
10294116 TTTTAT
1 TTTTAT
10294122 GAGAAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (21 bp):
TTTTATAATTTTATAATGATT
Found at i:10297403 original size:37 final size:37
Alignment explanation
Indices: 10297353--10297423 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
10297343 CTGCACACCA
10297353 TCATAGGAACCTGCACATGTTGCAGAAAACAATCGTG
1 TCATAGGAACCTGCACATGTTGCAGAAAACAATCGTG
10297390 TCATAGGAACCTGCACATGTTGCAGAAAACAATC
1 TCATAGGAACCTGCACATGTTGCAGAAAACAATC
10297424 ATGTATGCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.21
Consensus pattern (37 bp):
TCATAGGAACCTGCACATGTTGCAGAAAACAATCGTG
Found at i:10298242 original size:24 final size:24
Alignment explanation
Indices: 10298174--10298242 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
10298164 ATTAATAATA
10298174 AAAT-CTATGTAATTTAGTTAAAAT
1 AAATACTATGTAATTTAGTT-AAAT
* **
10298198 TAATA-TAAATAATTTA--T-AAT
1 AAATACTATGTAATTTAGTTAAAT
10298218 AAATACTATGTAATTTAGTTAAAT
1 AAATACTATGTAATTTAGTTAAAT
10298242 A
1 A
10298243 TTTAGTATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 10
0.68 0.12 0.20
Matches are distributed among these distances:
20 7 0.21
21 9 0.26
22 1 0.03
23 1 0.03
24 16 0.47
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (24 bp):
AAATACTATGTAATTTAGTTAAAT
Found at i:10303941 original size:9 final size:9
Alignment explanation
Indices: 10303927--10304058 Score: 55
Period size: 9 Copynumber: 14.6 Consensus size: 9
10303917 ATCTTGGATT
10303927 TTTTTATAA
1 TTTTTATAA
10303936 TTTTTA-AA
1 TTTTTATAA
*
10303944 TATTTGTTTACA
1 T-TTT-TATA-A
10303956 TTTTT-TAA
1 TTTTTATAA
*
10303964 TTTTT-TCAG
1 TTTTTAT-AA
10303973 TTATTTA-AA
1 TT-TTTATAA
10303982 TTTTTTATAA
1 -TTTTTATAA
*
10303992 -TTTTAAATA
1 TTTTTATA-A
*
10304001 TTTTTACAA
1 TTTTTATAA
10304010 TTTTTATAGA
1 TTTTTATA-A
*
10304020 TATTTTTTAA
1 T-TTTTATAA
*
10304030 TTATT-T--
1 TTTTTATAA
*
10304036 TTTTAATAA
1 TTTTTATAA
*
10304045 TTTTTAAAA
1 TTTTTATAA
10304054 TTTTT
1 TTTTT
10304059 TGGTCCGTGA
Statistics
Matches: 95, Mismatches: 12, Indels: 32
0.68 0.09 0.23
Matches are distributed among these distances:
6 3 0.03
7 1 0.01
8 17 0.18
9 43 0.45
10 19 0.20
11 10 0.11
12 2 0.02
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:10304011 original size:28 final size:28
Alignment explanation
Indices: 10303926--10304014 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 28
10303916 GATCTTGGAT
10303926 TTTTTTATAATTTTTAAATATTTGTTTAC-A
1 TTTTTTATAA-TTTTAAATA-TT-TTTACAA
* * * *
10303956 TTTTTTA-ATTTTTTCAGT-TATTTA-AA
1 TTTTTTATA-ATTTTAAATATTTTTACAA
10303982 TTTTTTATAATTTTAAATATTTTTACAA
1 TTTTTTATAATTTTAAATATTTTTACAA
10304010 TTTTT
1 TTTTT
10304015 ATAGATATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
26 18 0.39
27 7 0.15
28 7 0.15
29 7 0.15
30 7 0.15
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.65
Consensus pattern (28 bp):
TTTTTTATAATTTTAAATATTTTTACAA
Found at i:10304035 original size:23 final size:22
Alignment explanation
Indices: 10304009--10304051 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10303999 TATTTTTACA
*
10304009 ATTTTTATAGATATTTTTTAATT
1 ATTTTTATA-ATAATTTTTAATT
*
10304032 ATTTTTTTAATAATTTTTAA
1 ATTTTTATAATAATTTTTAA
10304052 AATTTTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
ATTTTTATAATAATTTTTAATT
Found at i:10308268 original size:21 final size:19
Alignment explanation
Indices: 10308252--10308297 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
10308242 CAGCAACTAC
*
10308252 AAATTCAGCAGCTGCAACT
1 AAATGCAGCAGCTGCAACT
10308271 -AATGCAGCAGCTGCAACT
1 AAATGCAGCAGCTGCAACT
10308289 -AATGCAGCA
1 AAATGCAGCA
10308298 CCGCAATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (19 bp):
AAATGCAGCAGCTGCAACT
Found at i:10308278 original size:18 final size:18
Alignment explanation
Indices: 10308257--10308297 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
10308247 ACTACAAATT
10308257 CAGCAGCTGCAACTAATG
1 CAGCAGCTGCAACTAATG
10308275 CAGCAGCTGCAACTAATG
1 CAGCAGCTGCAACTAATG
10308293 CAGCA
1 CAGCA
10308298 CCGCAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.34, C:0.29, G:0.22, T:0.15
Consensus pattern (18 bp):
CAGCAGCTGCAACTAATG
Found at i:10315534 original size:18 final size:17
Alignment explanation
Indices: 10315511--10315550 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
10315501 TTTCGGTTAA
10315511 AATCGAATTAATTGATT
1 AATCGAATTAATTGATT
* *
10315528 GAATCGATTTATTTGATT
1 -AATCGAATTAATTGATT
10315546 AATCG
1 AATCG
10315551 GTCGGTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (17 bp):
AATCGAATTAATTGATT
Found at i:10315879 original size:15 final size:14
Alignment explanation
Indices: 10315853--10315892 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
10315843 AAAATTAAAA
* *
10315853 AATTCGATTAATTT
1 AATTCAATTAATTC
10315867 AATTCATATTAATTC
1 AATTCA-ATTAATTC
10315882 AATTCAATTAA
1 AATTCAATTAA
10315893 CTAATCGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (14 bp):
AATTCAATTAATTC
Found at i:10316358 original size:10 final size:10
Alignment explanation
Indices: 10316343--10316367 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10316333 GATTCGATTA
10316343 AAAAAAAAAT
1 AAAAAAAAAT
10316353 AAAAAAAAAT
1 AAAAAAAAAT
10316363 AAAAA
1 AAAAA
10316368 TACCCAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:10324190 original size:4 final size:4
Alignment explanation
Indices: 10324183--10324208 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
10324173 TTATTTGATC
10324183 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
10324209 ATTAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:10327503 original size:28 final size:27
Alignment explanation
Indices: 10327449--10327508 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
10327439 GTGGAGTTCA
* * *
10327449 AATTTTGTATTTTTGTATTTTTTTACG
1 AATTTTATATTTTTGTAATTTTATACG
*
10327476 AATTTTATATGTTTTTTAATTTTATACG
1 AATTTTATAT-TTTTGTAATTTTATACG
*
10327504 GATTT
1 AATTT
10327509 CATTTTATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.63
Consensus pattern (27 bp):
AATTTTATATTTTTGTAATTTTATACG
Found at i:10328473 original size:5 final size:5
Alignment explanation
Indices: 10328463--10328488 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10328453 GTACGGTCAC
10328463 ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT A
10328489 ACTTTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:10335588 original size:9 final size:9
Alignment explanation
Indices: 10335509--10335778 Score: 106
Period size: 10 Copynumber: 28.4 Consensus size: 9
10335499 ATTTTCTCAT
10335509 AAAATTATTA
1 AAAATTA-TA
* *
10335519 AAAAATAGA
1 AAAATTATA
*
10335528 AAAA-CATA
1 AAAATTATA
*
10335536 AAAATATCTA
1 AAAAT-TATA
*
10335546 AAAATTTATT
1 AAAA-TTATA
*
10335556 GAAATTAATA
1 AAAATT-ATA
* *
10335566 TAAACTTATG
1 -AAAATTATA
10335576 AAAATTATAA
1 AAAATTAT-A
10335586 AAAATTA-A
1 AAAATTATA
*
10335594 AAACTT-TA
1 AAAATTATA
*
10335602 AATATTATAA
1 AAAATTAT-A
10335612 AAAATCTA-A
1 AAAAT-TATA
*
10335621 TAAAACTA-A
1 -AAAATTATA
*
10335630 TAAATTATAA
1 AAAATTAT-A
10335640 AAAATTAT-
1 AAAATTATA
10335648 AAAATTAATA
1 AAAATT-ATA
*
10335658 ATAAATATTTA
1 A-AAAT-TATA
*
10335669 AAATTTTATA
1 AAA-ATTATA
10335679 AAAATGTATA
1 AAAAT-TATA
*
10335689 AAAATTCTTA
1 AAAATT-ATA
10335699 TAAAATTATAAA
1 -AAAATTAT--A
*
10335711 AAAATCATA
1 AAAATTATA
*
10335720 AAAATTATT
1 AAAATTATA
10335729 AAAA-TAT-
1 AAAATTATA
*
10335736 TAAATTGATA
1 AAAATT-ATA
*
10335746 TAAACTTATA
1 -AAAATTATA
*
10335756 AAATTTATAA
1 AAAATTAT-A
10335766 AAAATTATA
1 AAAATTATA
10335775 AAAA
1 AAAA
10335779 CTTGAATTGG
Statistics
Matches: 195, Mismatches: 37, Indels: 57
0.67 0.13 0.20
Matches are distributed among these distances:
7 3 0.02
8 32 0.16
9 49 0.25
10 77 0.39
11 32 0.16
12 2 0.01
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAATTATA
Found at i:10335610 original size:26 final size:26
Alignment explanation
Indices: 10335577--10335658 Score: 96
Period size: 26 Copynumber: 3.1 Consensus size: 26
10335567 AAACTTATGA
10335577 AAATTATAAAAAATTA-AAAACTTTAA-
1 AAATTATAAAAAATTATAAAAC--TAAT
*
10335603 ATATTATAAAAAATCTAATAAAACTAAT
1 AAATTATAAAAAAT-T-ATAAAACTAAT
*
10335631 AAATTATAAAAAATTATAAAATTAAT
1 AAATTATAAAAAATTATAAAACTAAT
10335657 AA
1 AA
10335659 TAAATATTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
26 25 0.51
27 5 0.10
28 14 0.29
29 5 0.10
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (26 bp):
AAATTATAAAAAATTATAAAACTAAT
Found at i:10335702 original size:22 final size:19
Alignment explanation
Indices: 10335564--10335712 Score: 69
Period size: 18 Copynumber: 7.8 Consensus size: 19
10335554 TTGAAATTAA
* * *
10335564 TATAAACTTATGAAAATTA
1 TATAAAATTATAAAAATTT
* *
10335583 TA-AAAAAT-TAAAAACTT
1 TATAAAATTATAAAAATTT
* *
10335600 TA-AATATTATAAAAAATCT
1 TATAAAATTAT-AAAAATTT
* * * *
10335619 AATAAAACTA-ATAAATTA
1 TATAAAATTATAAAAATTT
*
10335637 TAAAAAATTAT-AAAATTAAT
1 TATAAAATTATAAAAATT--T
*
10335657 AATAAATATT-T-AAAATTT
1 TATAAA-ATTATAAAAATTT
10335675 TATAAAAATGTATAAAAATTCT
1 TAT-AAAAT-TATAAAAATT-T
10335697 TATAAAATTATAAAAA
1 TATAAAATTATAAAAA
10335713 AATCATAAAA
Statistics
Matches: 95, Mismatches: 23, Indels: 23
0.67 0.16 0.16
Matches are distributed among these distances:
17 12 0.13
18 27 0.28
19 13 0.14
20 25 0.26
21 14 0.15
22 4 0.04
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.35
Consensus pattern (19 bp):
TATAAAATTATAAAAATTT
Found at i:10335723 original size:20 final size:20
Alignment explanation
Indices: 10335676--10335732 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
10335666 TTAAAATTTT
*
10335676 ATAAAAATGTAT-AAAAATTC
1 ATAAAAAT-TATAAAAAAATC
*
10335696 TTATAAAATTATAAAAAAATC
1 ATA-AAAATTATAAAAAAATC
10335717 ATAAAAATTATTAAAA
1 ATAAAAATTA-TAAAA
10335733 TATTAAATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 12 0.39
21 19 0.61
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.32
Consensus pattern (20 bp):
ATAAAAATTATAAAAAAATC
Found at i:10336400 original size:21 final size:21
Alignment explanation
Indices: 10336376--10336419 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
10336366 TTTGTACCTT
10336376 TTTTATAAAATTTTA-AATATG
1 TTTTAT-AAATTTTATAATATG
* *
10336397 TTTTATTAATTTTATAATTTG
1 TTTTATAAATTTTATAATATG
10336418 TT
1 TT
10336420 AAAATTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (21 bp):
TTTTATAAATTTTATAATATG
Found at i:10336458 original size:18 final size:18
Alignment explanation
Indices: 10336435--10336515 Score: 58
Period size: 18 Copynumber: 4.3 Consensus size: 18
10336425 TTGTTAAATT
10336435 TTTATATTTTTAATAATA
1 TTTATATTTTTAATAATA
**
10336453 TTTATAAGTTTATATAA-A
1 TTTATATTTTTA-ATAATA
*
10336471 TTTTAATTATTTTTTAA-AATT
1 -TTT-A-TA-TTTTTAATAATA
* *
10336492 TTTAAATTTTTAATAATT
1 TTTATATTTTTAATAATA
10336510 TTTATA
1 TTTATA
10336516 ATGATTTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
17 7 0.14
18 21 0.43
19 8 0.16
20 6 0.12
21 3 0.06
22 4 0.08
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (18 bp):
TTTATATTTTTAATAATA
Found at i:10336484 original size:10 final size:9
Alignment explanation
Indices: 10336481--10336513 Score: 50
Period size: 8 Copynumber: 3.7 Consensus size: 9
10336471 TTTTAATTAT
10336481 TTTTTAAAA
1 TTTTTAAAA
10336490 TTTTT-AAA
1 TTTTTAAAA
10336498 TTTTTAATAA
1 TTTTTAA-AA
10336508 TTTTTA
1 TTTTTA
10336514 TAATGATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 6 0.27
10 8 0.36
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:10336516 original size:9 final size:9
Alignment explanation
Indices: 10336397--10336517 Score: 88
Period size: 10 Copynumber: 13.0 Consensus size: 9
10336387 TTTAAATATG
10336397 TTTTATTAA-
1 TTTTA-TAAT
10336406 TTTTATAAT
1 TTTTATAAT
*
10336415 TTGTTAAAAT
1 TT-TTATAAT
10336425 TTGTTA-AAT
1 TT-TTATAAT
10336434 TTTTAT-AT
1 TTTTATAAT
10336442 TTTTAATAAT
1 TTTT-ATAAT
*
10336452 ATTTATAAGT
1 TTTTATAA-T
*
10336462 TTATATAAAT
1 TTTTAT-AAT
* *
10336472 TTTAATTATT
1 TTTTA-TAAT
*
10336482 TTTTAAAAT
1 TTTTATAAT
10336491 TTTTA-AAT
1 TTTTATAAT
10336499 TTTTAATAAT
1 TTTT-ATAAT
10336509 TTTTATAAT
1 TTTTATAAT
10336518 GATTTTTTTA
Statistics
Matches: 92, Mismatches: 10, Indels: 20
0.75 0.08 0.16
Matches are distributed among these distances:
8 19 0.21
9 31 0.34
10 39 0.42
11 3 0.03
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (9 bp):
TTTTATAAT
Found at i:10336754 original size:25 final size:25
Alignment explanation
Indices: 10336726--10336773 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
10336716 GAATTTGACA
* *
10336726 TTTTTT-TCTAATTTTGTAACTAAT
1 TTTTTTATCCAATTTGGTAACTAAT
*
10336750 TTTTTTATCCAATTTGGTACCTAA
1 TTTTTTATCCAATTTGGTAACTAA
10336774 ACTTGGCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (25 bp):
TTTTTTATCCAATTTGGTAACTAAT
Found at i:10336764 original size:56 final size:57
Alignment explanation
Indices: 10336720--10336833 Score: 158
Period size: 56 Copynumber: 2.0 Consensus size: 57
10336710 GTATTTGAAT
* *
10336720 TTGACATTTTTTTCTAATTTTGTAACTAA-TTTTTTTATCCAATTTGGTACCTAAAC
1 TTGACATTTTTTTCTAACTTAGTAACTAAGTTTTTTTATCCAATTTGGTACCTAAAC
* * *
10336776 TTGGCATTTTTTTCTAACTTAGTACCTAAGTTTTTTTATATTCAATTTGGTACCTAAA
1 TTGACATTTTTTTCTAACTTAGTAACTAAG-TTTTTT-TATCCAATTTGGTACCTAAA
10336834 TTTATTAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 25 0.50
58 6 0.12
59 19 0.38
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (57 bp):
TTGACATTTTTTTCTAACTTAGTAACTAAGTTTTTTTATCCAATTTGGTACCTAAAC
Found at i:10337111 original size:31 final size:30
Alignment explanation
Indices: 10337040--10337112 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 30
10337030 CAAAAATTTA
*
10337040 AGTACCAACTTAAAAAAAAGTGTCAAGTTT
1 AGTACCAAATTAAAAAAAAGTGTCAAGTTT
* **
10337070 AGGTATCAAATTAGGAAAAAGTGTCAAGTTT
1 A-GTACCAAATTAAAAAAAAGTGTCAAGTTT
10337101 GAGTACCAAATT
1 -AGTACCAAATT
10337113 GGATCAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 1 0.03
31 34 0.94
32 1 0.03
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (30 bp):
AGTACCAAATTAAAAAAAAGTGTCAAGTTT
Found at i:10337145 original size:89 final size:89
Alignment explanation
Indices: 10336979--10337157 Score: 236
Period size: 89 Copynumber: 2.0 Consensus size: 89
10336969 TAAAAAAAGA
* **
10336979 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACTAAATTGGACCCCAAAAATTTAAGTA
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACCAAATTGGACCAAAAAAATTTAAGTA
*
10337044 CCAACTTAAAAAAAAGTGTCAAGT
66 CCAACTTAAAAAAAAATGTCAAGT
* * * *
10337068 TTAGGTATCAAATTAGGAAAAAGTGTCAAGTT-TGAGTACCAAATTGGATCAAAAAAAGTTTAAG
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAG-GTACCAAATTGGACCAAAAAAA-TTTAAG
* *
10337132 TATCAAGTT-AAAAAAAATGTCAAGT
64 TACCAACTTAAAAAAAAATGTCAAGT
10337157 T
1 T
10337158 CAAATATCAA
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
88 1 0.01
89 64 0.82
90 13 0.17
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.26
Consensus pattern (89 bp):
TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACCAAATTGGACCAAAAAAATTTAAGTA
CCAACTTAAAAAAAAATGTCAAGT
Found at i:10345542 original size:25 final size:24
Alignment explanation
Indices: 10345478--10345542 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 24
10345468 TTCAATTAAT
* *
10345478 ATAAATATTATTATTAAAAAAATAT
1 ATAAATATTAATA-TAAAAAAATAA
*
10345503 TTAAAT-TTAAATATAAATAAAATAA
1 ATAAATATT-AATATAAA-AAAATAA
*
10345528 ATAAATATTACTATA
1 ATAAATATTAATATA
10345543 TAATCATATC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
24 6 0.19
25 24 0.75
26 2 0.06
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
ATAAATATTAATATAAAAAAATAA
Found at i:10349968 original size:120 final size:120
Alignment explanation
Indices: 10349755--10349978 Score: 412
Period size: 120 Copynumber: 1.9 Consensus size: 120
10349745 CATTTCAAAC
10349755 ATAAGTAACTAAAGTATAATCTGAGACAAACAAAAGTGACTATTTTTATAGTTTACCCTAATTTT
1 ATAAGTAACTAAAGTATAATCTGAGACAAACAAAAGTGACTATTTTTATAGTTTACCCTAATTTT
10349820 AATTTATAATATACTTTTGCATGTGTAGATTTTCTTATAATATACTTTAGTTTTT
66 AATTTATAATATACTTTTGCATGTGTAGATTTTCTTATAATATACTTTAGTTTTT
* * * *
10349875 ATAAGTAACTAAAGTGTAATCTGAGACAAATAAAAGTGATTATTTTTATGGTTTACCCTAATTTT
1 ATAAGTAACTAAAGTATAATCTGAGACAAACAAAAGTGACTATTTTTATAGTTTACCCTAATTTT
10349940 AATTTATAATATACTTTTGCATGTGTAGATTTTCTTATA
66 AATTTATAATATACTTTTGCATGTGTAGATTTTCTTATA
10349979 TTTAAGAAAA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (120 bp):
ATAAGTAACTAAAGTATAATCTGAGACAAACAAAAGTGACTATTTTTATAGTTTACCCTAATTTT
AATTTATAATATACTTTTGCATGTGTAGATTTTCTTATAATATACTTTAGTTTTT
Found at i:10374176 original size:19 final size:22
Alignment explanation
Indices: 10374140--10374186 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
10374130 ATAATTGTGT
10374140 TTATTTTCTTTAAATTAA-GGA
1 TTATTTTCTTTAAATTAATGGA
*
10374161 TTATTTT-TTT-AATTAATGTA
1 TTATTTTCTTTAAATTAATGGA
10374181 TTATTT
1 TTATTT
10374187 ATTTCATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 6 0.25
20 11 0.46
21 7 0.29
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (22 bp):
TTATTTTCTTTAAATTAATGGA
Found at i:10374875 original size:15 final size:15
Alignment explanation
Indices: 10374857--10374898 Score: 56
Period size: 13 Copynumber: 3.1 Consensus size: 15
10374847 TAATATGAAA
10374857 TAAATAAATAAATAT
1 TAAATAAATAAATAT
10374872 TAAAT-AATAAA-AT
1 TAAATAAATAAATAT
10374885 TAAA-AAA-AAATAT
1 TAAATAAATAAATAT
10374898 T
1 T
10374899 GATACGAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.12
13 11 0.44
14 6 0.24
15 5 0.20
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAATAAATAAATAT
Found at i:10376637 original size:6 final size:6
Alignment explanation
Indices: 10376617--10376675 Score: 54
Period size: 6 Copynumber: 10.3 Consensus size: 6
10376607 TTGATTAATG
* *
10376617 TTTAAA -TTAAT TTTAAA TTT--A TCTTAAA TTTAAA TTT-AC TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTAAA TTTAAA
*
10376662 TTTAAA ATTAAA TT
1 TTTAAA TTTAAA TT
10376676 AAACTTAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
4 2 0.05
5 10 0.24
6 28 0.67
7 2 0.05
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:10376677 original size:17 final size:17
Alignment explanation
Indices: 10376617--10376683 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
10376607 TTGATTAATG
*
10376617 TTTAAATTAATTTTAAA
1 TTTAAATTAAATTTAAA
**
10376634 TTTATCTTAAATTTAAA
1 TTTAAATTAAATTTAAA
**
10376651 TTTACTTTAAATTTAAA
1 TTTAAATTAAATTTAAA
* *
10376668 ATTAAATTAAACTTAA
1 TTTAAATTAAATTTAA
10376684 TTAAATGAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTAAATTAAATTTAAA
Found at i:10376757 original size:14 final size:14
Alignment explanation
Indices: 10376738--10376778 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
10376728 AGCCCGAATG
10376738 AAAGGCCCAATTAC
1 AAAGGCCCAATTAC
* *
10376752 AAAGG-CCAAATAG
1 AAAGGCCCAATTAC
10376765 AAA-GCCCAATTAC
1 AAAGGCCCAATTAC
10376778 A
1 A
10376779 TCAGCCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
12 1 0.05
13 16 0.73
14 5 0.23
ACGTcount: A:0.49, C:0.24, G:0.15, T:0.12
Consensus pattern (14 bp):
AAAGGCCCAATTAC
Found at i:10377489 original size:7 final size:7
Alignment explanation
Indices: 10377477--10377518 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
10377467 TCAATATTTG
10377477 TTAATAA
1 TTAATAA
10377484 TTAATAA
1 TTAATAA
10377491 -TAATAA
1 TTAATAA
*
10377497 TTAATAT
1 TTAATAA
10377504 TATAATAA
1 T-TAATAA
10377512 TTAATAA
1 TTAATAA
10377519 AAAGGAAGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 6 0.19
7 19 0.61
8 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TTAATAA
Found at i:10377510 original size:15 final size:13
Alignment explanation
Indices: 10377478--10377518 Score: 64
Period size: 13 Copynumber: 3.0 Consensus size: 13
10377468 CAATATTTGT
10377478 TAATAATTAATAA
1 TAATAATTAATAA
10377491 TAATAATTAATATTA
1 TAATAATTAATA--A
10377506 TAATAATTAATAA
1 TAATAATTAATAA
10377519 AAAGGAAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 13 0.50
15 13 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATAATTAATAA
Found at i:10378596 original size:30 final size:27
Alignment explanation
Indices: 10378552--10378706 Score: 134
Period size: 30 Copynumber: 5.3 Consensus size: 27
10378542 AAAATTATCG
10378552 TTTTACCCCTAAACTTCCTAAAATTCCA
1 TTTTACCCCTAAACTTCC-AAAATTCCA
* *
10378580 TATTTGACCCCAAAACTTCTAAAAATTACCA
1 T-TTT-ACCCCTAAACTTC-CAAAATT-CCA
10378611 -TTTACCCCTAAACTTTCCAAAATTCCA
1 TTTTACCCCTAAAC-TTCCAAAATTCCA
* * *
10378638 TTTTTGATCTCGAAACTTCCAAAAATTACCA
1 -TTTT-ACCCCTAAACTTCC-AAAATT-CCA
10378669 TTTTA-CCCTCAAACTTTCCAAAATTCCA
1 TTTTACCCCT-AAAC-TTCCAAAATTCCA
10378697 TTTTAACCCC
1 TTTT-ACCCC
10378707 GATTTCACTA
Statistics
Matches: 104, Mismatches: 9, Indels: 26
0.75 0.06 0.19
Matches are distributed among these distances:
27 3 0.03
28 25 0.24
29 28 0.27
30 42 0.40
31 6 0.06
ACGTcount: A:0.34, C:0.30, G:0.02, T:0.34
Consensus pattern (27 bp):
TTTTACCCCTAAACTTCCAAAATTCCA
Found at i:10378634 original size:58 final size:58
Alignment explanation
Indices: 10378539--10378706 Score: 216
Period size: 58 Copynumber: 2.9 Consensus size: 58
10378529 TCCAGTTTCA
* *
10378539 CCAAAAATTATCGTTTTACCCCTAAAC-TTCCTAAAATTCCATATTTGACCCCAAAACTT
1 CCAAAAATTACCATTTTACCCCTAAACTTTCC-AAAATTCCAT-TTTGACCCCAAAACTT
* * * *
10378598 CTAAAAATTACCA-TTTACCCCTAAACTTTCCAAAATTCCATTTTTGATCTCGAAACTT
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCA-TTTTGACCCCAAAACTT
*
10378656 CCAAAAATTACCATTTTA-CCCTCAAACTTTCCAAAATTCCATTTTAACCCC
1 CCAAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTGACCCC
10378707 GATTTCACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
58 58 0.61
59 37 0.39
ACGTcount: A:0.35, C:0.29, G:0.02, T:0.33
Consensus pattern (58 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTGACCCCAAAACTT
Found at i:10378747 original size:28 final size:28
Alignment explanation
Indices: 10378687--10378756 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
10378677 TCAAACTTTC
**
10378687 CAAAATTCCA-TTTTAACCCCGATTTCA
1 CAAAATTCCATTTTTAACCCCGAAGTCA
10378714 CTAAAATTCCATTTTTAACCCCGAAAGTCA
1 C-AAAATTCCATTTTTAACCCCG-AAGTCA
10378744 -AAAATTACCATTT
1 CAAAATT-CCATTT
10378757 CAGCCCCGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 1 0.03
28 15 0.41
29 17 0.46
30 4 0.11
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (28 bp):
CAAAATTCCATTTTTAACCCCGAAGTCA
Found at i:10381608 original size:23 final size:22
Alignment explanation
Indices: 10381578--10381682 Score: 104
Period size: 23 Copynumber: 4.6 Consensus size: 22
10381568 ACACTAGCGC
* *
10381578 GCTCTCTGTTTAGCACGTCTCGT
1 GCTCTCTGATTAGCAC-TTTCGT
*
10381601 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTTT-CGT
10381624 GCTCTCTGATTAGCACTTTCTGT
1 GCTCTCTGATTAGCACTTTC-GT
* *
10381647 GCTCTCTAATTAGTACTTT-GT
1 GCTCTCTGATTAGCACTTTCGT
*
10381668 GTACTCTCTGTTTAG
1 G--CTCTCTGATTAG
10381683 TACTGTGTGT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
21 3 0.04
22 2 0.03
23 65 0.93
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.44
Consensus pattern (22 bp):
GCTCTCTGATTAGCACTTTCGT
Found at i:10381649 original size:46 final size:46
Alignment explanation
Indices: 10381578--10381682 Score: 149
Period size: 46 Copynumber: 2.3 Consensus size: 46
10381568 ACACTAGCGC
*
10381578 GCTCTCTGTTTAGCACGTCTCGTGCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACGTCTCGTGCTCTCTAATTAGCACTTTGTGT
* * *
10381624 GCTCTCTGATTAGCAC-TTTCTGTGCTCTCTAATTAGTACTTTGTGT
1 GCTCTCTGTTTAGCACGTCTC-GTGCTCTCTAATTAGCACTTTGTGT
*
10381670 ACTCTCTGTTTAG
1 GCTCTCTGTTTAG
10381683 TACTGTGTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 3 0.06
46 49 0.94
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.44
Consensus pattern (46 bp):
GCTCTCTGTTTAGCACGTCTCGTGCTCTCTAATTAGCACTTTGTGT
Found at i:10381683 original size:23 final size:23
Alignment explanation
Indices: 10381602--10381700 Score: 117
Period size: 23 Copynumber: 4.3 Consensus size: 23
10381592 ACGTCTCGTG
*
10381602 CTCTCTGATTAGCACTTTGTGTG
1 CTCTCTGATTAGCACTTTGTGTA
* *
10381625 CTCTCTGATTAGCACTTTCTGTG
1 CTCTCTGATTAGCACTTTGTGTA
* *
10381648 CTCTCTAATTAGTACTTTGTGTA
1 CTCTCTGATTAGCACTTTGTGTA
* * *
10381671 CTCTCTGTTTAGTACTGTGTGTA
1 CTCTCTGATTAGCACTTTGTGTA
*
10381694 ATCTCTG
1 CTCTCTG
10381701 TTGCCCAGCA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.45
Consensus pattern (23 bp):
CTCTCTGATTAGCACTTTGTGTA
Found at i:10381692 original size:69 final size:66
Alignment explanation
Indices: 10381602--10381749 Score: 154
Period size: 69 Copynumber: 2.2 Consensus size: 66
10381592 ACGTCTCGTG
* * ** *
10381602 CTCTCTGATTAGCACTTTGTGTGCTCTCTGATT-AGCACTTTCTGTGCTCTCTAATTAGTACTTT
1 CTCTCTGTTTAGCACTGTGTGTAATCTCTG-TTCAGCAC-TTATGTGCTCTCT-ATTAGTACTTT
10381666 GTGTA
63 G-GTA
* *
10381671 CTCTCTGTTTAGTACTGTGTGTAATCTCTGTTGCCCAGCACTTATGTGCTCTCTGTTAGTACTTT
1 CTCTCTGTTTAGCACTGTGTGTAATCTCTGTT---CAGCACTTATGTGCTCTCTATTAGTACTTT
10381736 GGTA
63 GGTA
*
10381740 CTTTCTGTTT
1 CTCTCTGTTT
10381750 GTTCCGTATA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
68 2 0.03
69 37 0.55
70 11 0.16
71 12 0.18
72 5 0.07
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (66 bp):
CTCTCTGTTTAGCACTGTGTGTAATCTCTGTTCAGCACTTATGTGCTCTCTATTAGTACTTTGGT
A
Found at i:10381699 original size:46 final size:46
Alignment explanation
Indices: 10381579--10381699 Score: 118
Period size: 46 Copynumber: 2.6 Consensus size: 46
10381569 CACTAGCGCG
* ** * *
10381579 CTCTCTGTTTAGCAC-GTCTCGTGCTCTCTGATTAGCACTTTGTGTG
1 CTCTCTGATTAGCACTGTCT-GTAATCTCTAATTAGCACTTTGTGTA
* ** *
10381625 CTCTCTGATTAGCACTTTCTGTGCTCTCTAATTAGTACTTTGTGTA
1 CTCTCTGATTAGCACTGTCTGTAATCTCTAATTAGCACTTTGTGTA
* * *
10381671 CTCTCTGTTTAGTACTGTGTGTAATCTCT
1 CTCTCTGATTAGCACTGTCTGTAATCTCT
10381700 GTTGCCCAGC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 60 0.95
47 3 0.05
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (46 bp):
CTCTCTGATTAGCACTGTCTGTAATCTCTAATTAGCACTTTGTGTA
Found at i:10383232 original size:26 final size:26
Alignment explanation
Indices: 10383203--10383257 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
10383193 TCTGCTAACC
*
10383203 TTTTGTTTTCTTTCCTTCTTCAAAAA
1 TTTTGCTTTCTTTCCTTCTTCAAAAA
10383229 TTTTGCTTTCTTTCCTTCTTCAAAAA
1 TTTTGCTTTCTTTCCTTCTTCAAAAA
10383255 TTT
1 TTT
10383258 ACTGTTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.18, C:0.20, G:0.04, T:0.58
Consensus pattern (26 bp):
TTTTGCTTTCTTTCCTTCTTCAAAAA
Found at i:10383440 original size:14 final size:14
Alignment explanation
Indices: 10383420--10383454 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
10383410 ACCTGTCAAA
10383420 TTTTAATTTT-TTT
1 TTTTAATTTTCTTT
10383433 TATTTAATTTTCTTT
1 T-TTTAATTTTCTTT
10383448 TTTTAAT
1 TTTTAAT
10383455 ATAAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 1 0.05
14 15 0.75
15 4 0.20
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTAATTTTCTTT
Found at i:10384450 original size:6 final size:6
Alignment explanation
Indices: 10384441--10384499 Score: 57
Period size: 6 Copynumber: 9.5 Consensus size: 6
10384431 ATTTAATTAA
* * *
10384441 TTATGT TTATGT TTATGT TTGTAT TTAAT-T AATTATGT TTATGC TTATGT
1 TTATGT TTATGT TTATGT TTATGT TT-ATGT --TTATGT TTATGT TTATGT
10384491 TTATGT TTA
1 TTATGT TTA
10384500 GGGTATAAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
6 38 0.86
7 3 0.07
8 3 0.07
ACGTcount: A:0.22, C:0.02, G:0.14, T:0.63
Consensus pattern (6 bp):
TTATGT
Done.