Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 25 of 182
Found at i:10384466 original size:38 final size:37
Alignment explanation
Indices: 10384410--10384499 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 37
10384400 CACAAAAAAA
* * *
10384410 TATGTTTACGTTTATATTTGTATTTAATTA-ATTATGTT
1 TATGTTTATGTTTATA-TT-TAATTAATTAGATTATGCT
* *
10384448 TATGTTTATGTTTGTATTTAATTAATTATGTTTATGCT
1 TATGTTTATGTTTATATTTAATTAATTA-GATTATGCT
10384486 TATGTTTATGTTTA
1 TATGTTTATGTTTA
10384500 GGGTATAAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
36 9 0.20
37 2 0.05
38 33 0.75
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.61
Consensus pattern (37 bp):
TATGTTTATGTTTATATTTAATTAATTAGATTATGCT
Found at i:10384489 original size:32 final size:32
Alignment explanation
Indices: 10384410--10384492 Score: 139
Period size: 32 Copynumber: 2.6 Consensus size: 32
10384400 CACAAAAAAA
* *
10384410 TATGTTTACGTTTATATTTGTATTTAATTAAT
1 TATGTTTATGTTTATGTTTGTATTTAATTAAT
10384442 TATGTTTATGTTTATGTTTGTATTTAATTAAT
1 TATGTTTATGTTTATGTTTGTATTTAATTAAT
*
10384474 TATGTTTATGCTTATGTTT
1 TATGTTTATGTTTATGTTT
10384493 ATGTTTAGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.61
Consensus pattern (32 bp):
TATGTTTATGTTTATGTTTGTATTTAATTAAT
Found at i:10386198 original size:21 final size:21
Alignment explanation
Indices: 10386174--10386225 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
10386164 TGAGACAATA
10386174 CTACCGATACAAGT-ATGACTT
1 CTACCGATACAAGTAATG-CTT
* * *
10386195 CTACCGAAACATGTAATGTTT
1 CTACCGATACAAGTAATGCTT
10386216 CTACCGATAC
1 CTACCGATAC
10386226 TAAAAACTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (21 bp):
CTACCGATACAAGTAATGCTT
Found at i:10387415 original size:201 final size:192
Alignment explanation
Indices: 10386978--10387431 Score: 518
Period size: 201 Copynumber: 2.3 Consensus size: 192
10386968 TACCAGTACT
* * * * *
10386978 CGATGCTGCTCACACGAGCTGCCGAGGACTTGCAACGTATGCGATACC-CTAGCCATCGGTACGG
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTC-AGCCATCGATACGG
* * *
10387042 TTCCTATCTGTACTATAAACTGTTCCCTAACTATGCTGCTCACACGAGCTGTCAAGAGTATGCAA
65 ---CTATCTGTACTATAAACTGTTCCCTAACGATACTGCTCACACGAGCTGTCAAGAATATGCAA
* * *
10387107 TAAGCATAGTCCCAGCCATCGTAGGGCCTGTAATCCATTTAGGATCCATATCTCTTTCTCGAGTC
127 TAAGCATAATCCCAGCCATCGTAGGGCCTGTAATCCATTTAGGATCCATATCTCTTTCCCGACTC
10387172 A
192 A
* * *
10387173 TGATGCTGCTCACACGAGCTATCGAGGACTCGTAACATATGCGGTACCTCAGCCATCGATACGG-
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAGCCATCGATACGGC
* ** * * * *
10387237 TATCTGTGC-ATATAACTGTTTTCTAACGATATTGCTCACATGAGCTGTCGAGAATATGCACTTA
66 TATCTGTACTATA-AACTGTTCCCTAACGATACTGCTCACACGAGCTGTCAAGAATATGCA-ATA
* * *
10387301 TGCATAAATCTCAGCCATCGTAGGGCTTGTAATCCATTTAGGATCCATATTTCTTTTCTCATTTC
129 AGCAT-AATCCCAGCCATCGTAGGGCCTGTAATCCATTTAGGATCCATA-------TCTC-TTTC
10387366 CCGACTCA
185 CCGACTCA
* *
10387374 CGATGCTGCTCGCACGAGCTGTCGAGGACTCGCAACATATGCGGTACATCAGCCATCG
1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAGCCATCG
10387432 CCTTGGTTTC
Statistics
Matches: 218, Mismatches: 29, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
190 3 0.01
191 47 0.22
192 6 0.03
193 40 0.18
195 54 0.25
196 1 0.00
200 4 0.02
201 63 0.29
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (192 bp):
CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAGCCATCGATACGGC
TATCTGTACTATAAACTGTTCCCTAACGATACTGCTCACACGAGCTGTCAAGAATATGCAATAAG
CATAATCCCAGCCATCGTAGGGCCTGTAATCCATTTAGGATCCATATCTCTTTCCCGACTCA
Found at i:10389445 original size:135 final size:135
Alignment explanation
Indices: 10389199--10389469 Score: 384
Period size: 135 Copynumber: 2.0 Consensus size: 135
10389189 GGTCAAACCA
* ** * *
10389199 GGTTTTGCATGTGAAGGCGTTGCAAAACCAGAAAGGTTTAGTTTCAGTGCCATTGATGATTCAAC
1 GGTTTTGCATGTGAAGGCGTCGCAAAACCAGAAAGGAATAGTTCCAGTGCCACTGATGATTCAAC
10389264 CATCCCTTGAGATCGTGATGTACATGTTAAGAAAGGTCGTGCTGCTAAAGCTGGACTTGGCTGCC
66 CATCCCTTGAGATCGTGATGTACATGTTAAGAAAGGTCGTGCTGCTAAAGCTGGACTTGGCTGCC
10389329 TTAGC
131 TTAGC
* * * * *
10389334 GGTTTTGCATGTGAAGGCGTCGCATAACCA-AAACGGAATAGTTCCTGTGGCACTGATGATTTAG
1 GGTTTTGCATGTGAAGGCGTCGCAAAACCAGAAA-GGAATAGTTCCAGTGCCACTGATGATTCAA
* * * *
10389398 CCATCCCTTGAGATTGTGATGTACAT-TCTAAGACAGGTCGTGTTGCTAAAGTTGGACTTGGCTG
65 CCATCCCTTGAGATCGTGATGTACATGT-TAAGAAAGGTCGTGCTGCTAAAGCTGGACTTGGCTG
10389462 CCTTAGC
129 CCTTAGC
10389469 G
1 G
10389470 ATCTTAGACG
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
134 4 0.03
135 116 0.97
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (135 bp):
GGTTTTGCATGTGAAGGCGTCGCAAAACCAGAAAGGAATAGTTCCAGTGCCACTGATGATTCAAC
CATCCCTTGAGATCGTGATGTACATGTTAAGAAAGGTCGTGCTGCTAAAGCTGGACTTGGCTGCC
TTAGC
Found at i:10389760 original size:18 final size:18
Alignment explanation
Indices: 10389739--10389815 Score: 84
Period size: 18 Copynumber: 4.3 Consensus size: 18
10389729 GCGTCTAATA
*
10389739 GGTGGAGGCAAAGAAAGT
1 GGTGGAGGCCAAGAAAGT
* *
10389757 GGTGGAGGCGAAGAAGGT
1 GGTGGAGGCCAAGAAAGT
*
10389775 GGTGGATGCCAAG-AAGAT
1 GGTGGAGGCCAAGAAAG-T
* *
10389793 GGTGAAGGCCAAGAAGGT
1 GGTGGAGGCCAAGAAAGT
10389811 GGTGG
1 GGTGG
10389816 TGAGGAGAGC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
17 2 0.04
18 44 0.92
19 2 0.04
ACGTcount: A:0.31, C:0.08, G:0.48, T:0.13
Consensus pattern (18 bp):
GGTGGAGGCCAAGAAAGT
Found at i:10389779 original size:36 final size:36
Alignment explanation
Indices: 10389739--10389815 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
10389729 GCGTCTAATA
* *
10389739 GGTGGAGGCAAAGAA-AGTGGTGGAGGCGAAGAAGGT
1 GGTGGAGGCAAAGAAGA-TGGTGAAGGCCAAGAAGGT
* *
10389775 GGTGGATGCCAAGAAGATGGTGAAGGCCAAGAAGGT
1 GGTGGAGGCAAAGAAGATGGTGAAGGCCAAGAAGGT
10389811 GGTGG
1 GGTGG
10389816 TGAGGAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 35 0.97
37 1 0.03
ACGTcount: A:0.31, C:0.08, G:0.48, T:0.13
Consensus pattern (36 bp):
GGTGGAGGCAAAGAAGATGGTGAAGGCCAAGAAGGT
Found at i:10390373 original size:47 final size:47
Alignment explanation
Indices: 10390238--10390375 Score: 186
Period size: 48 Copynumber: 2.9 Consensus size: 47
10390228 CCTTTTTTAT
*
10390238 ATCTGCCCTCTCTGGATTTTGAGGTATAAGATTGGATATGGTGACTTCA
1 ATCTG-CCTCTCTGGATTTTG-GGTATAAGATTGGATGTGGTGACTTCA
* * * * *
10390287 ATCTACCCCTCTGAATTTTAGGGTATAAGACTGGATGTGGTGGCTTCA
1 ATCTGCCTCTCTGGATTTT-GGGTATAAGATTGGATGTGGTGACTTCA
*
10390335 ATCTGCCTCTTTGGATTTTGGGTATAAGATTGGATGTGGTG
1 ATCTGCCTCTCTGGATTTTGGGTATAAGATTGGATGTGGTG
10390376 TTTCATTGGT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
47 21 0.27
48 51 0.66
49 5 0.06
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.37
Consensus pattern (47 bp):
ATCTGCCTCTCTGGATTTTGGGTATAAGATTGGATGTGGTGACTTCA
Found at i:10392849 original size:112 final size:112
Alignment explanation
Indices: 10392652--10392877 Score: 452
Period size: 112 Copynumber: 2.0 Consensus size: 112
10392642 GTAGGTTGAT
10392652 ATAGCCCAAATTTAATGTGAGCTCTATGAACTTCATCTTGTAGATTAGAAGGGTAATCTCATATT
1 ATAGCCCAAATTTAATGTGAGCTCTATGAACTTCATCTTGTAGATTAGAAGGGTAATCTCATATT
10392717 GATTTTCGAAATCCTAGATCATGCTCTATGGAAGAAACATGAAAGTC
66 GATTTTCGAAATCCTAGATCATGCTCTATGGAAGAAACATGAAAGTC
10392764 ATAGCCCAAATTTAATGTGAGCTCTATGAACTTCATCTTGTAGATTAGAAGGGTAATCTCATATT
1 ATAGCCCAAATTTAATGTGAGCTCTATGAACTTCATCTTGTAGATTAGAAGGGTAATCTCATATT
10392829 GATTTTCGAAATCCTAGATCATGCTCTATGGAAGAAACATGAAAGTC
66 GATTTTCGAAATCCTAGATCATGCTCTATGGAAGAAACATGAAAGTC
10392876 AT
1 AT
10392878 TTTATTTAGA
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 114 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (112 bp):
ATAGCCCAAATTTAATGTGAGCTCTATGAACTTCATCTTGTAGATTAGAAGGGTAATCTCATATT
GATTTTCGAAATCCTAGATCATGCTCTATGGAAGAAACATGAAAGTC
Found at i:10393721 original size:18 final size:17
Alignment explanation
Indices: 10393694--10393728 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10393684 CCTAGAATAC
*
10393694 CATCTAACTCTTTTTCT
1 CATCTAACTCTTCTTCT
10393711 CATCTTAACTCTTCTTCT
1 CATC-TAACTCTTCTTCT
10393729 TTCGTTTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.51
Consensus pattern (17 bp):
CATCTAACTCTTCTTCT
Found at i:10405550 original size:83 final size:83
Alignment explanation
Indices: 10405411--10405577 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 83
10405401 TGCATAACTG
10405411 AAGCCACAATAAGGAGATACATACGAATACATACAGCAATTGAAGAAAAGCAGAAAAATATTGTC
1 AAGCCACAATAAGGAGATACATACGAATACATACAGCAATTGAAGAAAAGCAGAAAAATATTGTC
10405476 ACCAGGTTAAGTATAAAT
66 ACCAGGTTAAGTATAAAT
*
10405494 AAGCCACAATAAGGAGATACATACGTATACATACAGCAATTGAAGAAAAGCAGAAAAATATTGTC
1 AAGCCACAATAAGGAGATACATACGAATACATACAGCAATTGAAGAAAAGCAGAAAAATATTGTC
10405559 ACCAGGTTAAGTATAAAT
66 ACCAGGTTAAGTATAAAT
10405577 A
1 A
10405578 TCTGTTTTAT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (83 bp):
AAGCCACAATAAGGAGATACATACGAATACATACAGCAATTGAAGAAAAGCAGAAAAATATTGTC
ACCAGGTTAAGTATAAAT
Found at i:10410593 original size:14 final size:14
Alignment explanation
Indices: 10410576--10410607 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10410566 GGCATTGCAG
10410576 AACACGCATGGAAC
1 AACACGCATGGAAC
*
10410590 AACATGCATGGAAC
1 AACACGCATGGAAC
10410604 AACA
1 AACA
10410608 ACTTTCTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.25, G:0.19, T:0.09
Consensus pattern (14 bp):
AACACGCATGGAAC
Found at i:10410879 original size:23 final size:25
Alignment explanation
Indices: 10410853--10410898 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10410843 CCAATTAGGG
10410853 AATTAT-TGTTTAG-ATTTAATTCT
1 AATTATCTGTTTAGAATTTAATTCT
*
10410876 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
10410899 TGGATCCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCT
Found at i:10416953 original size:23 final size:24
Alignment explanation
Indices: 10416926--10416970 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
10416916 CTAATTAGGG
10416926 AATTATTGTTTAG-ATTTAATTCT
1 AATTATTGTTTAGAATTTAATTCT
*
10416949 AATTATTTTTTAGAATTTAATT
1 AATTATTGTTTAGAATTTAATT
10416971 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (24 bp):
AATTATTGTTTAGAATTTAATTCT
Found at i:10433486 original size:168 final size:168
Alignment explanation
Indices: 10433208--10433680 Score: 804
Period size: 168 Copynumber: 2.8 Consensus size: 168
10433198 CGAGGATGAG
* *
10433208 AGGACAACATCCATCACAACAGATTCAAGCATCAGCTCTGCATACAAATTCAGCACAAATAAATA
1 AGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACAAATGAATA
*
10433273 ACAATCAGCAGTTGACCAGCTCACAGGCTGGATTAGACTTCAATTTTACAGGTCATCCGAATAGT
66 ACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCGAATAGT
* *
10433338 ACATCTTCCAGACCATGACCAATGCCAGGGGTGATAGA
131 TCATCTTCCAAACCATGACCAATGCCAGGGGTGATAGA
* *
10433376 AGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACTAATGAGTA
1 AGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACAAATGAATA
*
10433441 ACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCGTCCGAATAGT
66 ACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCGAATAGT
* *
10433506 TCATCTTCCAAACCATGTCCAATGCCAGGGGTGATTGA
131 TCATCTTCCAAACCATGACCAATGCCAGGGGTGATAGA
* *
10433544 AGGACAACATCCATGACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAATA
1 AGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACAAATGAATA
* * *
10433609 ACGATCAGCAGTTGACCGGCTCAC-GGCTGGCTTAGACTTCAATTTTACAGGTCATCCAAATAGT
66 ACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCGAATAGT
10433673 TCATCTTC
131 TCATCTTC
10433681 TAGAGTCTAG
Statistics
Matches: 288, Mismatches: 17, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
167 46 0.16
168 242 0.84
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (168 bp):
AGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACAAATGAATA
ACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCGAATAGT
TCATCTTCCAAACCATGACCAATGCCAGGGGTGATAGA
Found at i:10450336 original size:20 final size:21
Alignment explanation
Indices: 10450293--10450336 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
10450283 ACTTTCATCA
*
10450293 TTAAGCCTTAATTAAACATTT
1 TTAAGCCTTAATTAAACATAT
* *
10450314 TTAA-CCTTTATTAAACCTAT
1 TTAAGCCTTAATTAAACATAT
10450334 TTA
1 TTA
10450337 TAAATAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.45
Consensus pattern (21 bp):
TTAAGCCTTAATTAAACATAT
Found at i:10457150 original size:28 final size:29
Alignment explanation
Indices: 10457119--10457182 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 29
10457109 AAAATGAGAC
*
10457119 TTTTGGATAC-CT-GGGGGTAAAATGGTAA
1 TTTTGGA-ACTCTAGGGGGAAAAATGGTAA
10457147 TTTTGG-ACTCTAGGGGGAAAAATGGTAA
1 TTTTGGAACTCTAGGGGGAAAAATGGTAA
10457175 TTTTGGAA
1 TTTTGGAA
10457183 AAATTTAGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 2 0.06
27 2 0.06
28 27 0.84
29 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.31, T:0.33
Consensus pattern (29 bp):
TTTTGGAACTCTAGGGGGAAAAATGGTAA
Found at i:10457343 original size:29 final size:28
Alignment explanation
Indices: 10457277--10457448 Score: 179
Period size: 29 Copynumber: 6.0 Consensus size: 28
10457267 GAAGCATTTG
*
10457277 GGGGT-AAAATGGTAA-TTTTAGAAGTGTT
1 GGGGTAAAAAT-GTAATTTTTGGAAGT-TT
* *
10457305 GTGGTCAAAAATGGAATTTTTGGAAGTTT
1 GGGGT-AAAAATGTAATTTTTGGAAGTTT
10457334 GGGGTTAAAAATGTAATTTTTGGAAGTTT
1 GGGG-TAAAAATGTAATTTTTGGAAGTTT
** * *
10457363 AGTAGCAAAAATGTAATTTTTAGAAGTTT
1 -GGGGTAAAAATGTAATTTTTGGAAGTTT
* *
10457392 ACGGGT-AAAATGTAATTTTTGGAAGTTCG
1 -GGGGTAAAAATGTAATTTTTGGAAGTT-T
10457421 GGGGTAAAAATGTAATTTTTGGAAGTTT
1 GGGGTAAAAATGTAATTTTTGGAAGTTT
10457449 CAATGTAAAA
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
28 28 0.23
29 75 0.62
30 17 0.14
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (28 bp):
GGGGTAAAAATGTAATTTTTGGAAGTTT
Found at i:10457372 original size:58 final size:55
Alignment explanation
Indices: 10457252--10457448 Score: 184
Period size: 57 Copynumber: 3.4 Consensus size: 55
10457242 AAATCAGAAT
* *
10457252 CAAAAATGGGA-TTTT-GAAGCATTTGGGGGTAAAATGGTAA-TTTTAGAAGTGTTGTGG
1 CAAAAATGGAATTTTTGGAAG--TTT-GGGGTAAAAT-GTAATTTTTGGAAGT-TTGTGG
*
10457309 TCAAAAATGGAATTTTTGGAAGTTTGGGGTTAAAAATGTAATTTTTGGAAGTTTAGTAG
1 -CAAAAATGGAATTTTTGGAAGTTTGGGG-T-AAAATGTAATTTTTGGAAGTTT-GTGG
* * * * *
10457368 CAAAAATGTAATTTTTAGAAGTTTACGGGTAAAATGTAATTTTTGGAAGTTCGGGGG
1 CAAAAATGGAATTTTTGGAAGTTT-GGGGTAAAATGTAATTTTTGGAAGTT-TGTGG
* *
10457425 TAAAAATGTAATTTTTGGAAGTTT
1 CAAAAATGGAATTTTTGGAAGTTT
10457449 CAATGTAAAA
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
57 49 0.41
58 43 0.36
59 24 0.20
60 4 0.03
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (55 bp):
CAAAAATGGAATTTTTGGAAGTTTGGGGTAAAATGTAATTTTTGGAAGTTTGTGG
Found at i:10457430 original size:57 final size:58
Alignment explanation
Indices: 10457310--10457449 Score: 185
Period size: 57 Copynumber: 2.4 Consensus size: 58
10457300 GTGTTGTGGT
* * * *
10457310 CAAAAATGGAATTTTTGGAAGTTTGGGGTTAAAAATGTAATTTTTGGAAGTTTAGTAG
1 CAAAAATGTAATTTTTGGAAGTTTCGGGTTAAAAATGTAATTTTTGGAAGTTCAGGAG
* * *
10457368 CAAAAATGTAATTTTTAGAAGTTTACGGG-T-AAAATGTAATTTTTGGAAGTTCGGGGG
1 CAAAAATGTAATTTTTGGAAGTTT-CGGGTTAAAAATGTAATTTTTGGAAGTTCAGGAG
*
10457425 TAAAAATGTAATTTTTGGAAGTTTC
1 CAAAAATGTAATTTTTGGAAGTTTC
10457450 AATGTAAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
56 1 0.01
57 45 0.62
58 23 0.32
59 3 0.04
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (58 bp):
CAAAAATGTAATTTTTGGAAGTTTCGGGTTAAAAATGTAATTTTTGGAAGTTCAGGAG
Found at i:10457457 original size:57 final size:58
Alignment explanation
Indices: 10457311--10457508 Score: 170
Period size: 57 Copynumber: 3.4 Consensus size: 58
10457301 TGTTGTGGTC
* ** * * *
10457311 AAAAATGGAATTTTTGGAAGTTT-GGGGTTAAAAATGTAATTTTTGGAAGTTTAGTA-GC
1 AAAAATGTAATTTTTGGAAGTTTACAGG-TAAAAATGTAATTTTTGGAAG-TTCGGAGGT
* * *
10457369 AAAAATGTAATTTTTAGAAGTTTACGGGT-AAAATGTAATTTTTGGAAGTTCGGGGGT
1 AAAAATGTAATTTTTGGAAGTTTACAGGTAAAAATGTAATTTTTGGAAGTTCGGAGGT
* * **
10457426 AAAAATGTAATTTTTGGAAGTTT-CAATGTAAAAAAAGTAATTTAAGAGAAGTTCGGAGGT
1 AAAAATGTAATTTTTGGAAGTTTAC-AGGT-AAAAATGTAATTTTTG-GAAGTTCGGAGGT
* **
10457486 CAAAATACAATTTTTGGATAGTT
1 AAAAATGTAATTTTTGGA-AGTT
10457509 GAAGTCCGAG
Statistics
Matches: 116, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
56 4 0.03
57 44 0.38
58 22 0.19
59 15 0.13
60 27 0.23
61 4 0.03
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.36
Consensus pattern (58 bp):
AAAAATGTAATTTTTGGAAGTTTACAGGTAAAAATGTAATTTTTGGAAGTTCGGAGGT
Found at i:10458602 original size:21 final size:21
Alignment explanation
Indices: 10458543--10458602 Score: 50
Period size: 21 Copynumber: 2.7 Consensus size: 21
10458533 ATTAATTAAT
*
10458543 ATATTATTAATGAATTTACTATTA
1 ATATTATT-ATGAA-AT-CTATTA
* *
10458567 TTATTATTATTAAATCTATTA
1 ATATTATTATGAAATCTATTA
10458588 ATATTTATTA-GAAAT
1 ATA-TTATTATGAAAT
10458603 ATTAACACCA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
21 12 0.40
22 7 0.23
23 4 0.13
24 7 0.23
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (21 bp):
ATATTATTATGAAATCTATTA
Found at i:10459429 original size:23 final size:22
Alignment explanation
Indices: 10459403--10459491 Score: 76
Period size: 23 Copynumber: 4.0 Consensus size: 22
10459393 TAATGGACAT
10459403 TTTAAATTTACAATAATA-TTAAA
1 TTTAAATTTA-AATAA-ACTTAAA
10459426 TTTAAA-TTAAATTCAAACTTAAA
1 TTTAAATTTAAA-T-AAACTTAAA
* *
10459449 -TTAAAATTAAATAAATTTAAA
1 TTTAAATTTAAATAAACTTAAA
* *
10459470 TTAAAATTTAAAATAAATTTAA
1 TTTAAATTT-AAATAAACTTAA
10459492 TTTCAAAGTA
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
21 10 0.18
22 17 0.30
23 30 0.53
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAAATTTAAATAAACTTAAA
Found at i:10459430 original size:6 final size:6
Alignment explanation
Indices: 10459421--10459491 Score: 62
Period size: 6 Copynumber: 12.7 Consensus size: 6
10459411 TACAATAATA
* * *
10459421 TTAAAT TTAAA- TTAAAT TCAAAC TTAAA- TTAAAA TTAAA- -TAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
10459465 TTAAAT TAAAAT TTAAA- ATAAAT TTAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAA
10459492 TTTCAAAGTA
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
4 4 0.08
5 14 0.26
6 35 0.66
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (6 bp):
TTAAAT
Found at i:10459436 original size:11 final size:11
Alignment explanation
Indices: 10459421--10459491 Score: 74
Period size: 11 Copynumber: 6.4 Consensus size: 11
10459411 TACAATAATA
10459421 TTAAATTTAAA-
1 TTAAA-TTAAAT
*
10459432 TTAAATTCAAAC
1 TTAAATT-AAAT
*
10459444 TTAAATTAAAA
1 TTAAATTAAAT
10459455 TTAAA-TAAAT
1 TTAAATTAAAT
10459465 TTAAATTAAAAT
1 TTAAATT-AAAT
*
10459477 TTAAAATAAAT
1 TTAAATTAAAT
10459488 TTAA
1 TTAA
10459492 TTTCAAAGTA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
10 11 0.21
11 25 0.47
12 17 0.32
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (11 bp):
TTAAATTAAAT
Found at i:10459465 original size:15 final size:15
Alignment explanation
Indices: 10459445--10459474 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10459435 AATTCAAACT
10459445 TAAATTAAAATTAAA
1 TAAATTAAAATTAAA
*
10459460 TAAATTTAAATTAAA
1 TAAATTAAAATTAAA
10459475 ATTTAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATTAAAATTAAA
Found at i:10459471 original size:33 final size:32
Alignment explanation
Indices: 10459414--10459491 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 32
10459404 TTAAATTTAC
* *
10459414 AATAATATTAAATTTAAATTAAATTCAAACTTAA
1 AATAAAATTAAA--TAAATTAAATTAAAACTTAA
* *
10459448 ATTAAAATTAAATAAATTTAAATTAAAATTTAA
1 AATAAAATTAAATAAA-TTAAATTAAAACTTAA
*
10459481 AATAAATTTAA
1 AATAAAATTAA
10459492 TTTCAAAGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
32 4 0.11
33 23 0.62
34 10 0.27
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (32 bp):
AATAAAATTAAATAAATTAAATTAAAACTTAA
Found at i:10459480 original size:28 final size:28
Alignment explanation
Indices: 10459404--10459512 Score: 91
Period size: 28 Copynumber: 3.9 Consensus size: 28
10459394 AATGGACATT
* *
10459404 TTAAATTTACAA-TAATATTAAATTTAAA
1 TTAAATTTA-AATTAAAATTAAAATTAAA
*
10459432 TTAAATTCAAACTT-AAATTAAAATTAAA
1 TTAAATTTAAA-TTAAAATTAAAATTAAA
10459460 -TAAATTTAAATTAAAATTTAAAA-TAAA
1 TTAAATTTAAATTAAAA-TTAAAATTAAA
* * *
10459487 TTTAATTTCAAAGTAAATTTTAAAAT
1 TTAAATTT-AAATTAAA-ATTAAAAT
10459513 GGTTTGGGCC
Statistics
Matches: 66, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
26 2 0.03
27 18 0.27
28 32 0.48
29 14 0.21
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (28 bp):
TTAAATTTAAATTAAAATTAAAATTAAA
Found at i:10459511 original size:29 final size:27
Alignment explanation
Indices: 10459449--10459512 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
10459439 CAAACTTAAA
*
10459449 TTAAAATTAAATAAATTTAAATTAAAAT
1 TTAAAA-TAAATAAATTTAAAGTAAAAT
* *
10459477 TTAAAATAAATTTAATTTCAAAGTAAATT
1 TTAAAATAAA-TAAATTT-AAAGTAAAAT
10459506 TTAAAAT
1 TTAAAAT
10459513 GGTTTGGGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 4 0.13
28 12 0.39
29 15 0.48
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (27 bp):
TTAAAATAAATAAATTTAAAGTAAAAT
Found at i:10460220 original size:92 final size:92
Alignment explanation
Indices: 10460106--10460889 Score: 1234
Period size: 92 Copynumber: 8.6 Consensus size: 92
10460096 ATTTGGTATC
* * *
10460106 GAAGCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGTTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
10460171 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGATGTTT
* *
10460198 GAAACTTCATCTTGCTGTTACTACAACTTCAGAGAGATAAAGACTTGCTATCC-A--TTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
10460260 ACTTCAAGAGGATAGGAATTAATGATT
66 ACTTCAAGAGGATAGGAATTGATGTTT
* * * *
10460287 GAAACTTCATCTTACTCTTACTATAACTTCAGAGAGATAAAAACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
10460352 ACTTCAAGAGGATTGAAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGATGTTT
* * *
10460379 GAACCGTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10460444 ACTTCAAGAGGATGGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGATGTTT
* * *
10460471 AAAGCTTCATCTTACTCTTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10460536 ACTTCAAGAGGATAAGG-ATTAATGTTT
66 ACTTCAAGAGGAT-AGGAATTGATGTTT
* * *
10460563 GAAGCTTCATCTTACTCTTACTACAACTTCAGTGAGATAAAGACTTACTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10460628 ACTTCAAGAGGATAGGGATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGATGTTT
* *
10460655 GAAGCTTCATCTTGCTCTTACTACAACTTCAGTGAGATAAAGACTTGTTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10460720 ACTTCAAGAGGATAGGGATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGATGTTT
* *
10460747 GAAGCTTTATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTATTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
10460812 ACGTCAAGAGGATAGAAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGATGTTT
*
10460839 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTAT
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTAT
10460890 TATTTATTTT
Statistics
Matches: 639, Mismatches: 48, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
89 81 0.13
90 1 0.00
91 4 0.01
92 551 0.86
93 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (92 bp):
GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
ACTTCAAGAGGATAGGAATTGATGTTT
Found at i:10461070 original size:50 final size:49
Alignment explanation
Indices: 10461016--10461305 Score: 207
Period size: 50 Copynumber: 5.8 Consensus size: 49
10461006 AAATCTTCGT
* *
10461016 GGTACTGGATCCACCGTTGCGGTCTTAGATCTTTCCCTTCATGCTTCTGA
1 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCTTCGTG-TTCTGA
* * * ** *
10461066 GGTACACGG-TCCGCCGTTGTGAT-TTAGGCCTTTCCCTTTTGTGTT-TGCA
1 GGTAC-TGGATCCGCCGTTGCGGTCTTAGATCTTTCCC-TTCGTGTTCTG-A
* * * *
10461115 -ATACTGGATCCGCCGTTGCTGTCTTAGCTCTTTCCCTTTGTGTCTTCTGA
1 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCTTCGTG--TTCTGA
* * * *
10461165 GGTACATGG-TCCGCCGTTGC-GACTTAGACCTTTCCCTT-TTGTATCTTTGC
1 GGTAC-TGGATCCGCCGTTGCGGTCTTAGATCTTTCCCTTCGTGT-TC--TGA
* * * * * * *
10461215 GGTATTGGATCCGTCGTTACGGTCTTAGATCTTTCTCATCGTGTTTTTGT
1 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCTTCGTG-TTCTGA
* *
10461265 GGTACTGGATCCGCCATTGTGGTCTTAGATCTTTCCCTTCG
1 GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCTTCG
10461306 AATTTTATGT
Statistics
Matches: 185, Mismatches: 38, Indels: 34
0.72 0.15 0.13
Matches are distributed among these distances:
47 3 0.02
48 24 0.13
49 30 0.16
50 89 0.48
51 32 0.17
52 6 0.03
53 1 0.01
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.40
Consensus pattern (49 bp):
GGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCTTCGTGTTCTGA
Found at i:10461131 original size:48 final size:49
Alignment explanation
Indices: 10461046--10461206 Score: 145
Period size: 49 Copynumber: 3.3 Consensus size: 49
10461036 GGTCTTAGAT
* * *
10461046 CTTTCCCTTCATG-CTTCTGAGGTACACGGTCCGCCGTTGTGATTTAGGC
1 CTTTCCCTT-TTGTCTTCTGAGATACATGGTCCGCCGTTGTGATTTAGGC
*
10461095 CTTTCCCTTTTGTGTT-TGCA-ATAC-TGGATCCGCCGTTGCTG-TCTTA-GC
1 CTTTCCCTTTTGTCTTCTG-AGATACATGG-TCCGCCGTTG-TGAT-TTAGGC
* * * *
10461143 TCTTTCCCTTTGTGTCTTCTGAGGTACATGGTCCGCCGTTGCGACTTAGAC
1 -CTTTCCCTTT-TGTCTTCTGAGATACATGGTCCGCCGTTGTGATTTAGGC
10461194 CTTTCCCTTTTGT
1 CTTTCCCTTTTGT
10461207 ATCTTTGCGG
Statistics
Matches: 91, Mismatches: 9, Indels: 24
0.73 0.07 0.19
Matches are distributed among these distances:
47 2 0.02
48 20 0.22
49 30 0.33
50 20 0.22
51 16 0.18
52 3 0.03
ACGTcount: A:0.11, C:0.28, G:0.22, T:0.40
Consensus pattern (49 bp):
CTTTCCCTTTTGTCTTCTGAGATACATGGTCCGCCGTTGTGATTTAGGC
Found at i:10461141 original size:98 final size:100
Alignment explanation
Indices: 10460982--10461249 Score: 306
Period size: 99 Copynumber: 2.7 Consensus size: 100
10460972 CGGGTTCGTT
* *** * *** *
10460982 GTTGCGACTTAAACCTTTCCCTTCAAATCTTCGTGGTACTGGATCCACCGTTGCGGTCTTAGATC
1 GTTGCGACTTAGACCTTTCCCTTTTGATCTTTGCAATACTGGATCCGCCGTTGCGGTCTTAGATC
10461047 TTTCCCTTCATG-CTTCTGAGGTACACGGTCCGCC
66 TTTCCCTTCATGTCTTCTGAGGTACACGGTCCGCC
* * * * * *
10461081 GTTGTGATTTAGGCCTTTCCCTTTTG-TGTTTGCAATACTGGATCCGCCGTTGCTGTCTTAGCTC
1 GTTGCGACTTAGACCTTTCCCTTTTGATCTTTGCAATACTGGATCCGCCGTTGCGGTCTTAGATC
** *
10461145 TTTCCCTTTGTGTCTTCTGAGGTACATGGTCCGCC
66 TTTCCCTTCATGTCTTCTGAGGTACACGGTCCGCC
** * * *
10461180 GTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGCGGTATTGGATCCGTCGTTACGGTCTTAGAT
1 GTTGCGACTTAGACCTTTCCCTTTTG-ATCTTTGCAATACTGGATCCGCCGTTGCGGTCTTAGAT
10461245 CTTTC
65 CTTTC
10461250 TCATCGTGTT
Statistics
Matches: 137, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
98 40 0.29
99 63 0.46
101 34 0.25
ACGTcount: A:0.13, C:0.26, G:0.22, T:0.39
Consensus pattern (100 bp):
GTTGCGACTTAGACCTTTCCCTTTTGATCTTTGCAATACTGGATCCGCCGTTGCGGTCTTAGATC
TTTCCCTTCATGTCTTCTGAGGTACACGGTCCGCC
Found at i:10461612 original size:29 final size:29
Alignment explanation
Indices: 10461572--10461857 Score: 208
Period size: 29 Copynumber: 9.7 Consensus size: 29
10461562 CGTTTGGGGT
10461572 AAAATGGTAA-TTTTGGAAGTGTCGGGGTCA
1 AAAAT-GTAATTTTTGGAAGT-TCGGGGTCA
* ** *
10461602 AAAATGGAATTTTTGGAAGTTTAGGGTTA
1 AAAATGTAATTTTTGGAAGTTCGGGGTCA
* * *
10461631 AAAATGTAGTTTTTGTAAGTTTAGGGG-CA
1 AAAATGTAATTTTTGGAAG-TTCGGGGTCA
* * *
10461660 AAAATGTAGTTTTTGGAAGTTTGGGGGCA
1 AAAATGTAATTTTTGGAAGTTCGGGGTCA
* * * *
10461689 AAAATGTAATTTTTGGAATTTTTGAGGT-T
1 AAAATGTAATTTTTGGAA-GTTCGGGGTCA
* * *
10461718 AAAATGGAATTTTTTGAAGTTCGAAGG-CA
1 AAAATGTAATTTTTGGAAGTTCG-GGGTCA
*
10461747 AAAATGTAATTTTTGGAAATTCGGGGGT-A
1 AAAATGTAATTTTTGGAAGTTC-GGGGTCA
* **
10461776 AAAATGTAATTTTTAGAAGTTACAAGG-CTA
1 AAAATGTAATTTTTGGAAGTT-CGGGGTC-A
* *
10461806 AAAATGTAATTTTTGAAAAGTTTGGGGGTC-
1 AAAATGTAATTTTTG-GAAG-TTCGGGGTCA
*
10461836 AAAATATAATTTTTGGATAGTT
1 AAAATGTAATTTTTGGA-AGTT
10461858 TAGGGACCTT
Statistics
Matches: 204, Mismatches: 37, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
28 9 0.04
29 128 0.63
30 59 0.29
31 5 0.02
32 3 0.01
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAGTTCGGGGTCA
Found at i:10461663 original size:58 final size:57
Alignment explanation
Indices: 10461572--10461862 Score: 237
Period size: 58 Copynumber: 5.0 Consensus size: 57
10461562 CGTTTGGGGT
* * *
10461572 AAAATGGTAA-TTTTGGAAGTGTCGGGGTCAAAAATGGAATTTTTGGAAGTTTAGGGTTA
1 AAAAT-GTAATTTTTGGAAGT-TTGGGGGCAAAAATGGAATTTTTGGAAGTTTAGGG-CA
* * * * * *
10461631 AAAATGTAGTTTTTGTAAGTTTAGGGGCAAAAATGTAGTTTTTGGAAGTTTGGGGGCA
1 AAAATGTAATTTTTGGAAGTTTGGGGGCAAAAATGGAATTTTTGGAAGTTT-AGGGCA
* * * ** * * *
10461689 AAAATGTAATTTTTGGAATTTTTGAGGTTAAAATGGAATTTTTTGAAGTTCGAAGGCA
1 AAAATGTAATTTTTGGAAGTTTGGGGGCAAAAATGGAATTTTTGGAAGTT-TAGGGCA
* * * * * * *
10461747 AAAATGTAATTTTTGGAAATTCGGGGGTAAAAATGTAATTTTTAGAAGTTACAAGGCTA
1 AAAATGTAATTTTTGGAAGTTTGGGGGCAAAAATGGAATTTTTGGAAGTT-TAGGGC-A
*
10461806 AAAATGTAATTTTTGAAAAGTTTGGGGGTCAAAATAT--AATTTTTGGATAGTTTAGGG
1 AAAATGTAATTTTTG-GAAGTTTGGGGG-CAAAA-ATGGAATTTTTGGA-AGTTTAGGG
10461863 ACCTTTAGGG
Statistics
Matches: 186, Mismatches: 38, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
58 122 0.66
59 33 0.18
60 21 0.11
61 8 0.04
62 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.36
Consensus pattern (57 bp):
AAAATGTAATTTTTGGAAGTTTGGGGGCAAAAATGGAATTTTTGGAAGTTTAGGGCA
Found at i:10461703 original size:87 final size:87
Alignment explanation
Indices: 10461572--10461857 Score: 285
Period size: 87 Copynumber: 3.2 Consensus size: 87
10461562 CGTTTGGGGT
* *
10461572 AAAATGGTAA-TTTTGGAAGTGTCGGGGTCAAAAATGGAATTTTTGGAAGTTTAGGGTTAAAAAT
1 AAAAT-GTAATTTTTGGAAGT-TCGGGGGCAAAAATGTAATTTTTGGAAGTTTAGGGTTAAAAAT
*
10461636 GTAGTTTTTGTAAGTTTAGGGGCA
64 GTAATTTTTGTAAGTTTAGGGGCA
* * * *
10461660 AAAATGTAGTTTTTGGAAGTTTGGGGGCAAAAATGTAATTTTTGGAATTTTTGAGGTT-AAAATG
1 AAAATGTAATTTTTGGAAGTTCGGGGGCAAAAATGTAATTTTTGGAAGTTTAG-GGTTAAAAATG
* * *
10461724 GAATTTTT-TGAAG-TTCGAAGGCA
65 TAATTTTTGT-AAGTTTAG-GGGCA
* * * * * *
10461747 AAAATGTAATTTTTGGAAATTCGGGGGTAAAAATGTAATTTTTAGAAGTTACAAGGCTAAAAATG
1 AAAATGTAATTTTTGGAAGTTCGGGGGCAAAAATGTAATTTTTGGAAGTT-TAGGGTTAAAAATG
* *
10461812 TAATTTTTGAAAAGTTTGGGGGTC-
65 TAATTTTTG-TAAGTTTAGGGG-CA
*
10461836 AAAATATAATTTTTGGATAGTT
1 AAAATGTAATTTTTGGA-AGTT
10461858 TAGGGACCTT
Statistics
Matches: 161, Mismatches: 26, Indels: 20
0.78 0.13 0.10
Matches are distributed among these distances:
86 4 0.02
87 97 0.60
88 32 0.20
89 21 0.13
90 7 0.04
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (87 bp):
AAAATGTAATTTTTGGAAGTTCGGGGGCAAAAATGTAATTTTTGGAAGTTTAGGGTTAAAAATGT
AATTTTTGTAAGTTTAGGGGCA
Found at i:10463085 original size:21 final size:21
Alignment explanation
Indices: 10463026--10463085 Score: 50
Period size: 21 Copynumber: 2.7 Consensus size: 21
10463016 ATTAATTAAT
*
10463026 ATATTATTAATGAATTTACTATTA
1 ATATTATT-ATGAA-AT-CTATTA
* *
10463050 TTATTATTATTAAATCTATTA
1 ATATTATTATGAAATCTATTA
10463071 ATATTTATTA-GAAAT
1 ATA-TTATTATGAAAT
10463086 ATTAACACCA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
21 12 0.40
22 7 0.23
23 4 0.13
24 7 0.23
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (21 bp):
ATATTATTATGAAATCTATTA
Found at i:10463857 original size:17 final size:16
Alignment explanation
Indices: 10463835--10463886 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
10463825 AATGGACATT
*
10463835 TTAAATTTACAATAATA
1 TTAAATTTAAAATAA-A
10463852 TTAAATTTAAAATAAA
1 TTAAATTTAAAATAAA
* *
10463868 TTTAATTTCAAAGTAAA
1 TTAAATTT-AAAATAAA
10463885 TT
1 TT
10463887 TTAAAATGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 8 0.26
17 23 0.74
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (16 bp):
TTAAATTTAAAATAAA
Found at i:10470501 original size:16 final size:16
Alignment explanation
Indices: 10470451--10470501 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
10470441 TATTGAGAAA
10470451 AAAATGTAATACAAAAT
1 AAAATGTAATAC-AAAT
*
10470468 AAAAT-TAGATA-ATTAT
1 AAAATGTA-ATACA-AAT
10470484 AAAATGTAATACAAAT
1 AAAATGTAATACAAAT
10470500 AA
1 AA
10470502 TGCAAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
15 1 0.04
16 16 0.57
17 11 0.39
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (16 bp):
AAAATGTAATACAAAT
Found at i:10482713 original size:148 final size:148
Alignment explanation
Indices: 10482478--10482771 Score: 543
Period size: 148 Copynumber: 2.0 Consensus size: 148
10482468 GCTTAATTCT
10482478 CTCGAGTGCTAAGCAACCAGCAAAGAAAAAAAGAGAACCATAGACTTCCCTGTTTTCACATTAAA
1 CTCGAGTGCTAAGCAACCAGCAAAGAAAAAAAGAGAACCATAGACTTCCCTGTTTTCACATTAAA
*
10482543 AACAAGAAAAGGAGACCACCCAGATGAAGAACAGCTGAAAATTATTCATAAGAAAACAGGGAGAA
66 AACAAGAAAAGGAGACCACCCAGATGAAGAACAGCTGAAAATTATTCACAAGAAAACAGGGAGAA
10482608 GAAATGCACGAGAAATCG
131 GAAATGCACGAGAAATCG
* *
10482626 CTCGAGTGCTAAGCGACCAGCAAAGAAAAAAAGAGAACCATAGACTTCCCTGTTTTCACGTTAAA
1 CTCGAGTGCTAAGCAACCAGCAAAGAAAAAAAGAGAACCATAGACTTCCCTGTTTTCACATTAAA
* *
10482691 AACAAGAAAAGGAGACCACCCAGATGAAGAGCAGCTGCAAATTATTCACAAGAAAACAGGGAGAA
66 AACAAGAAAAGGAGACCACCCAGATGAAGAACAGCTGAAAATTATTCACAAGAAAACAGGGAGAA
10482756 GAAATGCACGAGAAAT
131 GAAATGCACGAGAAAT
10482772 ATATAAACAA
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
148 141 1.00
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.15
Consensus pattern (148 bp):
CTCGAGTGCTAAGCAACCAGCAAAGAAAAAAAGAGAACCATAGACTTCCCTGTTTTCACATTAAA
AACAAGAAAAGGAGACCACCCAGATGAAGAACAGCTGAAAATTATTCACAAGAAAACAGGGAGAA
GAAATGCACGAGAAATCG
Found at i:10492090 original size:21 final size:21
Alignment explanation
Indices: 10492064--10492105 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10492054 TTGATCGATG
10492064 GCTTACCATGCAACAT-GAAGA
1 GCTTACCA-GCAACATGGAAGA
*
10492085 GCTTACCAGCAGCATGGAAGA
1 GCTTACCAGCAACATGGAAGA
10492106 ATTAGATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.17
Consensus pattern (21 bp):
GCTTACCAGCAACATGGAAGA
Found at i:10494353 original size:20 final size:21
Alignment explanation
Indices: 10494310--10494353 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
10494300 ACTTTCATCA
*
10494310 TTAAGCCTTAATTAAACATTT
1 TTAAGCCTTAATTAAACATAT
* *
10494331 TTAA-CCTTTATTAAACCTAT
1 TTAAGCCTTAATTAAACATAT
10494351 TTA
1 TTA
10494354 TAAATAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.45
Consensus pattern (21 bp):
TTAAGCCTTAATTAAACATAT
Found at i:10496924 original size:41 final size:41
Alignment explanation
Indices: 10496879--10497238 Score: 259
Period size: 41 Copynumber: 8.8 Consensus size: 41
10496869 AAAGGTAAAG
**
10496879 CATTAGCGGCGCTT-TGTGGAAAGCGCCGCTAAAGGTCGGGT
1 CATTAGCGGCGCTTAT-TAAAAAGCGCCGCTAAAGGTCGGGT
* * * * ****
10496920 CATTAGCGGCGCTTTTTTATAAGCGCCGCAAAAGGT-AAAA
1 CATTAGCGGCGCTTATTAAAAAGCGCCGCTAAAGGTCGGGT
* * ***
10496960 CATTAGCGGCGCTT-TTCACAAAGCGCCGCAAAAGGTAAAG-
1 CATTAGCGGCGCTTATT-AAAAAGCGCCGCTAAAGGTCGGGT
* * * *
10497000 CATTAGCGGCGCTTAGTAGAAAGCACCGCTAAAGGTCGGAT
1 CATTAGCGGCGCTTATTAAAAAGCGCCGCTAAAGGTCGGGT
* *
10497041 CATTAGCGGCACTTA-TATAAAAGCACCGCTAAAGGTCGGGT
1 CATTAGCGGCGCTTATTA-AAAAGCGCCGCTAAAGGTCGGGT
* * *
10497082 CATTAGCGGCACTTATAAAAAAGCGCCGCTAAAGGTAGGGT
1 CATTAGCGGCGCTTATTAAAAAGCGCCGCTAAAGGTCGGGT
* * * * *
10497123 CAATAGCGGCACTTATAAAAAAAGCGCCGCTAAAGGTAAGAG-
1 CATTAGCGGCGCTTAT-TAAAAAGCGCCGCTAAAGGT-CGGGT
* ** * * *
10497165 AATTAGCGGCGCTTATGGAAAAGCGCTGCTAAAAGTCGAAG-
1 CATTAGCGGCGCTTATTAAAAAGCGCCGCTAAAGGTCG-GGT
** *
10497206 CAATT-GCGGCGCTTATGGAAAAGCACCGCTAAA
1 C-ATTAGCGGCGCTTATTAAAAAGCGCCGCTAAA
10497239 ATTTATACAT
Statistics
Matches: 269, Mismatches: 39, Indels: 22
0.82 0.12 0.07
Matches are distributed among these distances:
39 2 0.01
40 63 0.23
41 163 0.61
42 38 0.14
43 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (41 bp):
CATTAGCGGCGCTTATTAAAAAGCGCCGCTAAAGGTCGGGT
Found at i:10497075 original size:121 final size:121
Alignment explanation
Indices: 10496856--10497076 Score: 352
Period size: 121 Copynumber: 1.8 Consensus size: 121
10496846 GCGTTTGGAA
* * * *
10496856 ACAAAGCGCCGCAAAAGGTAAAGCATTAGCGGCGCTTTGTGGAAAGCGCCGCTAAAGGTCGGGTC
1 ACAAAGCGCCGCAAAAGGTAAAGCATTAGCGGCGCTTAGTAGAAAGCACCGCTAAAGGTCGGATC
* * * * *
10496921 ATTAGCGGCGCTTTTTTATAAGCGCCGCAAAAGGTAAAACATTAGCGGCGCTTTTC
66 ATTAGCGGCACTTATATAAAAGCACCGCAAAAGGTAAAACATTAGCGGCGCTTTTC
10496977 ACAAAGCGCCGCAAAAGGTAAAGCATTAGCGGCGCTTAGTAGAAAGCACCGCTAAAGGTCGGATC
1 ACAAAGCGCCGCAAAAGGTAAAGCATTAGCGGCGCTTAGTAGAAAGCACCGCTAAAGGTCGGATC
*
10497042 ATTAGCGGCACTTATATAAAAGCACCGCTAAAGGT
66 ATTAGCGGCACTTATATAAAAGCACCGCAAAAGGT
10497077 CGGGTCATTA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
121 90 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (121 bp):
ACAAAGCGCCGCAAAAGGTAAAGCATTAGCGGCGCTTAGTAGAAAGCACCGCTAAAGGTCGGATC
ATTAGCGGCACTTATATAAAAGCACCGCAAAAGGTAAAACATTAGCGGCGCTTTTC
Found at i:10498925 original size:40 final size:40
Alignment explanation
Indices: 10498880--10498960 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
10498870 ATCTCTTTTC
10498880 AATTAATGTTCTTATGATTGTTTTATTATTTTTGTTTATG
1 AATTAATGTTCTTATGATTGTTTTATTATTTTTGTTTATG
10498920 AATTAATGTTCTTATGATTGTTTTATTATTTTTGTTTATG
1 AATTAATGTTCTTATGATTGTTTTATTATTTTTGTTTATG
10498960 A
1 A
10498961 TGCTTGTTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.23, C:0.02, G:0.12, T:0.62
Consensus pattern (40 bp):
AATTAATGTTCTTATGATTGTTTTATTATTTTTGTTTATG
Found at i:10499285 original size:8 final size:8
Alignment explanation
Indices: 10499272--10499323 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
10499262 TAATTCAAAA
10499272 TATTTAAT
1 TATTTAAT
10499280 TATTTAAT
1 TATTTAAT
10499288 TATTTAAT
1 TATTTAAT
** *
10499296 TAAATATT
1 TATTTAAT
* *
10499304 TAATTAAA
1 TATTTAAT
10499312 TATTTAAT
1 TATTTAAT
10499320 TATT
1 TATT
10499324 AAAACAACCC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTTAAT
Found at i:10499303 original size:12 final size:12
Alignment explanation
Indices: 10499255--10499321 Score: 80
Period size: 12 Copynumber: 5.1 Consensus size: 12
10499245 AAAACAACCC
10499255 AAATATTTAATT
1 AAATATTTAATT
10499267 CAAAATATTTAATT
1 --AAATATTTAATT
10499281 ATTTAATTATTTAATT
1 A---AA-TATTTAATT
10499297 AAATATTTAATT
1 AAATATTTAATT
10499309 AAATATTTAATT
1 AAATATTTAATT
10499321 A
1 A
10499322 TTAAAACAAC
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
12 23 0.47
13 2 0.04
14 12 0.24
15 2 0.04
16 10 0.20
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (12 bp):
AAATATTTAATT
Found at i:10499303 original size:20 final size:20
Alignment explanation
Indices: 10499258--10499323 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
10499248 ACAACCCAAA
10499258 TATTTAATTCAAAATATTTAAT
1 TATTTAATT--AAATATTTAAT
** * *
10499280 TATTTAATTATTTAATTAAA
1 TATTTAATTAAATATTTAAT
10499300 TATTTAATTAAATATTTAAT
1 TATTTAATTAAATATTTAAT
10499320 TATT
1 TATT
10499324 AAAACAACCC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
20 27 0.75
22 9 0.25
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTTAATTAAATATTTAAT
Found at i:10499377 original size:4 final size:4
Alignment explanation
Indices: 10499368--10499400 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
10499358 AAATCAACTC
10499368 AATT AATT AATT AATT AATT AATT AATT -ATT AA
1 AATT AATT AATT AATT AATT AATT AATT AATT AA
10499401 AAACAACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:10499438 original size:22 final size:21
Alignment explanation
Indices: 10499413--10499518 Score: 84
Period size: 18 Copynumber: 5.3 Consensus size: 21
10499403 ACAACTCAAA
10499413 TATTTAATTCAAAATATTTAAT
1 TATTTAATTC-AAATATTTAAT
*
10499435 TATTTAA-TC--ATATATAAT
1 TATTTAATTCAAATATTTAAT
10499453 TATTTAATT-AAATATTTAAT
1 TATTTAATTCAAATATTTAAT
* *
10499473 TATATTAAAGT-AAATAATT-A-
1 TAT-TT-AATTCAAATATTTAAT
**
10499493 TAAATAATT-AAATATTTAAT
1 TATTTAATTCAAATATTTAAT
10499513 TATTTA
1 TATTTA
10499519 TTTATATTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
18 25 0.37
19 3 0.04
20 17 0.25
21 5 0.07
22 17 0.25
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (21 bp):
TATTTAATTCAAATATTTAAT
Found at i:10499481 original size:155 final size:158
Alignment explanation
Indices: 10499161--10499475 Score: 451
Period size: 163 Copynumber: 2.0 Consensus size: 158
10499151 TAAGTTAGAA
* **
10499161 AAAACAACCGAAATACTTCATTATTTAATTACTTAAATCAACCCAATTAATTAATTAATTAATTT
1 AAAACAACCCAAATACTGAATTATTTAATTACTTAAATCAACCCAATTAATTAATTAATTAA---
*
10499226 TTTATTTATATAAATATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAATTAT
63 TTTA--TATATAAATATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAATCAT
*
10499291 TTAATTAAATATTTAATTAAATATTTAATTATT
126 ATAATTAAATATTTAATTAAATATTTAATTATT
* * *
10499324 AAAACAACCCAAATACTGAATTATTTTATTATTTAAATCAACTCAATTAATTAATTAATTAA-TT
1 AAAACAACCCAAATACTGAATTATTTAATTACTTAAATCAACCCAATTAATTAATTAATTAATTT
* *
10499388 A-AT-TAATTATTAAAAACAACTCAAATATTTAATTCAAAATATTTAATTATTTAATCATAT-A-
66 ATATATAAATATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAATCATATAAT
*
10499449 TAATTATTTAATTAAATATTTAATTAT
131 TAAATATTTAATTAAATATTTAATTAT
10499476 ATTAAAGTAA
Statistics
Matches: 141, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
153 26 0.18
154 1 0.01
155 53 0.38
156 2 0.01
159 3 0.02
163 56 0.40
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (158 bp):
AAAACAACCCAAATACTGAATTATTTAATTACTTAAATCAACCCAATTAATTAATTAATTAATTT
ATATATAAATATTAAAAACAACCCAAATATTTAATTCAAAATATTTAATTATTTAATCATATAAT
TAAATATTTAATTAAATATTTAATTATT
Found at i:10499641 original size:97 final size:96
Alignment explanation
Indices: 10499460--10500175 Score: 1051
Period size: 97 Copynumber: 7.4 Consensus size: 96
10499450 AATTATTTAA
* * * *
10499460 TTAAATATTTAATTATATTAAAGTAAATAATTATAAATAA-TTAAATATTTAATTATTTATTTAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTAT-ATTAACTTAAAGATTTAATTATTTAATTAT
10499524 ATTAAAGTAAATAATTATATTAAGTTAAAAGAT
65 ATTAAAGTAAATAATTATATTAAGTT-AAAGAT
* * *
10499557 ATAA-TATTTAATTATATTAAAGTAAATAATTATAATAACTTGCAAGATTTAATTATTTAATTAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAACTT-AAAGATTTAATTATTTAATTAT
* *
10499621 GTTAAAGTAAATAATTATATTAAGTTAAAGAA
65 ATTAAAGTAAATAATTATATTAAGTTAAAGAT
* * *
10499653 TTAAATATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATTTAAATATTTAATTAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAACTT-AAAGATTTAATTATTTAATTAT
* *
10499718 GTTAAAGTAAATAATTATATTACGTTAAAGAT
65 ATTAAAGTAAATAATTATATTAAGTTAAAGAT
*
10499750 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAACTT-AAAGATTTAATTATTTAATTAT
*
10499815 GTTAAAGTAAATAATTATATTAAGTTAAAAGAT
65 ATTAAAGTAAATAATTATATTAAGTT-AAAGAT
*
10499848 TTAATTATTTAATTATGTTAAAGTAAATAATTATATTAAGC-TAAAGATTTAATTATTTAATTAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAA-CTTAAAGATTTAATTATTTAATTAT
* * *
10499912 ATGAAAGTAAATAATTATATTAAATTAAATAT
65 ATTAAAGTAAATAATTATATTAAGTTAAAGAT
* * *
10499944 TTAATTATTTAATTATGTTAAAGTAAATAATTATATTAATTTAAAAGATATAATTATTTAATTAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAACTT-AAAGATTTAATTATTTAATTAT
* * *
10500009 ATTAAACTAAATAATTATATTAAATTAAATAT
65 ATTAAAGTAAATAATTATATTAAGTTAAAGAT
* * * *
10500041 TTAATTACTTAATTATATTAAAGTAAATAATTATATTAAATTAAATATTTAATTACTTAATTATA
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAACTTAAAGATTTAATTATTTAATTATA
* *
10500106 TTAAAGTAAATAATTATATTAAATTAAATAT
66 TTAAAGTAAATAATTATATTAAGTTAAAGAT
10500137 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAA
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAA
10500176 AATTTTTAAT
Statistics
Matches: 577, Mismatches: 35, Indels: 15
0.92 0.06 0.02
Matches are distributed among these distances:
95 5 0.01
96 172 0.30
97 355 0.62
98 45 0.08
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.45
Consensus pattern (96 bp):
TTAATTATTTAATTATATTAAAGTAAATAATTATATTAACTTAAAGATTTAATTATTTAATTATA
TTAAAGTAAATAATTATATTAAGTTAAAGAT
Found at i:10500176 original size:48 final size:48
Alignment explanation
Indices: 10499460--10500175 Score: 1067
Period size: 48 Copynumber: 14.8 Consensus size: 48
10499450 AATTATTTAA
* * *
10499460 TTAAATATTTAATTATATTAAAGTAAATAATTATAAATAA-TTAAATAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTAT-ATTAAGTTAAAGAT
*
10499508 TTAATTATTTATTTATATTAAAGTAAATAATTATATTAAGTTAAAAGAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGAT
* * * *
10499557 ATAA-TATTTAATTATATTAAAGTAAATAATTATAATAACTTGCAAGAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGAT
* *
10499605 TTAATTATTTAATTATGTTAAAGTAAATAATTATATTAAGTTAAAGAA
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGAT
*
10499653 TTAAATATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGAT
* * *
10499702 TTAAATATTTAATTATGTTAAAGTAAATAATTATATTACGTTAAAGAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGAT
10499750 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGAT
*
10499799 TTAATTATTTAATTATGTTAAAGTAAATAATTATATTAAGTTAAAAGAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGAT
* *
10499848 TTAATTATTTAATTATGTTAAAGTAAATAATTATATTAAGCTAAAGAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGAT
* * *
10499896 TTAATTATTTAATTATATGAAAGTAAATAATTATATTAAATTAAATAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGAT
* *
10499944 TTAATTATTTAATTATGTTAAAGTAAATAATTATATTAATTTAAAAGAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTT-AAAGAT
* * * *
10499993 ATAATTATTTAATTATATTAAACTAAATAATTATATTAAATTAAATAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGAT
* * *
10500041 TTAATTACTTAATTATATTAAAGTAAATAATTATATTAAATTAAATAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGAT
* * *
10500089 TTAATTACTTAATTATATTAAAGTAAATAATTATATTAAATTAAATAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGAT
10500137 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAA
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAA
10500176 AATTTTTAAT
Statistics
Matches: 618, Mismatches: 44, Indels: 12
0.92 0.07 0.02
Matches are distributed among these distances:
47 4 0.01
48 389 0.63
49 225 0.36
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.45
Consensus pattern (48 bp):
TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAGAT
Found at i:10500179 original size:145 final size:145
Alignment explanation
Indices: 10499460--10500176 Score: 1098
Period size: 145 Copynumber: 4.9 Consensus size: 145
10499450 AATTATTTAA
* * *
10499460 TTAAATATTTAATTATATTAAAGTAAATAATTATA-AATAATTAAATATTTAATTATTTATTTAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTA-AATTAAATATTTAATTATTTAATTAT
*
10499524 ATTAAAGTAAATAATTATATTAAGTTAAAAGATATAA-TATTTAATTATATTAAAGTAAATAATT
65 ATTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATATTAAAGTAAATAATT
* * *
10499588 ATAATAACTTGCAAGAT
130 ATATTAAATT-AAAGAT
* * * * *
10499605 TTAATTATTTAATTATGTTAAAGTAAATAATTATATTAAGTTAAAGAATTAAATATTTAATTATA
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAATTAAATATTTAATTATTTAATTATA
* *
10499670 TTAAAGTAAATAATTATATTAAGTTAAAAGATTTAAATATTTAATTATGTTAAAGTAAATAATTA
66 TTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTA
**
10499735 TATTACGTTAAAGAT
131 TATTAAATTAAAGAT
* *
10499750 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTAT
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAATT-AAATATTTAATTATTTAATTAT
* *
10499815 GTTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATGTTAAAGTAAATAATT
65 ATTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATATTAAAGTAAATAATT
**
10499880 ATATTAAGCTAAAGAT
130 ATATTAAATTAAAGAT
* *
10499896 TTAATTATTTAATTATATGAAAGTAAATAATTATATTAAATTAAATATTTAATTATTTAATTATG
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAATTAAATATTTAATTATTTAATTATA
* * *
10499961 TTAAAGTAAATAATTATATTAATTTAAAAGATATAATTATTTAATTATATTAAACTAAATAATTA
66 TTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTA
*
10500026 TATTAAATTAAATAT
131 TATTAAATTAAAGAT
* *
10500041 TTAATTACTTAATTATATTAAAGTAAATAATTATATTAAATTAAATATTTAATTACTTAATTATA
1 TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAATTAAATATTTAATTATTTAATTATA
* *
10500106 TTAAAGTAAATAATTATATTAAATT-AAATATTTAATTATTTAATTATATTAAAGTAAATAATTA
66 TTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTA
10500170 TATTAAA
131 TATTAAA
10500177 ATTTTTAATT
Statistics
Matches: 530, Mismatches: 39, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
144 43 0.08
145 316 0.60
146 171 0.32
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.45
Consensus pattern (145 bp):
TTAATTATTTAATTATATTAAAGTAAATAATTATATTAAATTAAATATTTAATTATTTAATTATA
TTAAAGTAAATAATTATATTAAGTTAAAAGATTTAATTATTTAATTATATTAAAGTAAATAATTA
TATTAAATTAAAGAT
Found at i:10500185 original size:18 final size:18
Alignment explanation
Indices: 10500139--10500187 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
10500129 TTAAATATTT
10500139 AATTATTTAATTATATTAA
1 AATT-TTTAATTATATTAA
* ***
10500158 AGTAAATAATTATATTAA
1 AATTTTTAATTATATTAA
10500176 AATTTTTAATTA
1 AATTTTTAATTA
10500188 AATTTAATCA
Statistics
Matches: 22, Mismatches: 8, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
AATTTTTAATTATATTAA
Found at i:10505829 original size:66 final size:66
Alignment explanation
Indices: 10505723--10505879 Score: 217
Period size: 66 Copynumber: 2.4 Consensus size: 66
10505713 CAAATTGCTC
*
10505723 AACTTAAAGAGGAGGCTGCAACGAGAGAAGCAGAGGCTCAAAAAAAATATGATGAACTCCATC-T
1 AACTTAAAGAGGAGGCTGCAACGAGAGAAGCAGAGGCTCAAAAAAAATATGAAGAACTCCA-CAT
10505787 AA
65 AA
* ** *
10505789 AACTTAAAGAGGAGGTTGCATTGAGAGAAGCAGAGTCTCAAAAAAAATATGAAGAACTCCACATA
1 AACTTAAAGAGGAGGCTGCAACGAGAGAAGCAGAGGCTCAAAAAAAATATGAAGAACTCCACATA
*
10505854 C
66 A
* * *
10505855 AACTTAAAGTGGAGGCAGCAGCGAG
1 AACTTAAAGAGGAGGCTGCAACGAG
10505880 GCAAGCGGAG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
65 1 0.01
66 78 0.99
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (66 bp):
AACTTAAAGAGGAGGCTGCAACGAGAGAAGCAGAGGCTCAAAAAAAATATGAAGAACTCCACATA
A
Found at i:10505891 original size:21 final size:21
Alignment explanation
Indices: 10505865--10505917 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
10505855 AACTTAAAGT
10505865 GGAGGCAGCAGCGAGGCAAGC
1 GGAGGCAGCAGCGAGGCAAGC
* *
10505886 GGAGGCAGTAGCTAGGCAAGC
1 GGAGGCAGCAGCGAGGCAAGC
* *
10505907 GAAGGAAGCAG
1 GGAGGCAGCAG
10505918 AGGCTACAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.45, T:0.04
Consensus pattern (21 bp):
GGAGGCAGCAGCGAGGCAAGC
Found at i:10510211 original size:28 final size:29
Alignment explanation
Indices: 10510180--10510240 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
10510170 AAAATGAGAC
10510180 TTTTAGA-TACCCGAGGGC-AAAATGGTAA
1 TTTTAGACT-CCCGAGGGCAAAAATGGTAA
* *
10510208 TTTTGGACTCTCGAGGGCAAAAATGGTAA
1 TTTTAGACTCCCGAGGGCAAAAATGGTAA
10510237 TTTT
1 TTTT
10510241 GGAAAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 14 0.48
29 15 0.52
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (29 bp):
TTTTAGACTCCCGAGGGCAAAAATGGTAA
Found at i:10510399 original size:29 final size:29
Alignment explanation
Indices: 10510354--10510569 Score: 199
Period size: 29 Copynumber: 7.4 Consensus size: 29
10510344 AAAAAGGTAA
* *
10510354 TTTGGAAGTGTCGGGGTCAAAAATGGAATT
1 TTTGGAAGT-TTGGGGTCAAAAATGTAATT
**
10510384 TTTGGAAGTTTGGGGTTTAAAATGTAATT
1 TTTGGAAGTTTGGGGTCAAAAATGTAATT
*
10510413 TTTGGTAGTTTAGGGG-CAAAAATGTAA-T
1 TTTGGAAGTTT-GGGGTCAAAAATGTAATT
*
10510441 TTTGGAAGTTTAGGGT-AAAAATGTAATT
1 TTTGGAAGTTTGGGGTCAAAAATGTAATT
* *
10510469 TTTGTAAGTTCGAGGG-CAAAAATGTAATT
1 TTTGGAAGTTTG-GGGTCAAAAATGTAATT
** * *
10510498 TTTAAAAGTTTTAGGGTTAAAAATGTAATT
1 TTTGGAAG-TTTGGGGTCAAAAATGTAATT
* * *
10510528 TTAGAGAAGTTCGGGGGTCAAAAAT-AAATT
1 TTTG-GAAGTT-TGGGGTCAAAAATGTAATT
10510558 TTTGGACAGTTT
1 TTTGGA-AGTTT
10510570 AGGGACCTCT
Statistics
Matches: 150, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
27 13 0.09
28 21 0.14
29 61 0.41
30 42 0.28
31 13 0.09
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (29 bp):
TTTGGAAGTTTGGGGTCAAAAATGTAATT
Found at i:10512058 original size:11 final size:11
Alignment explanation
Indices: 10512042--10512097 Score: 69
Period size: 11 Copynumber: 5.0 Consensus size: 11
10512032 TTATAATAAT
10512042 ATTAAATTTAA
1 ATTAAATTTAA
*
10512053 ATTAAATTCAA
1 ATTAAATTTAA
10512064 ACTTAAA-TTAA
1 A-TTAAATTTAA
10512075 ATTAAAATTTAA
1 ATT-AAATTTAA
*
10512087 AATAAATTTAA
1 ATTAAATTTAA
10512098 TTTCAAAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
10 2 0.05
11 26 0.67
12 11 0.28
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:10512059 original size:5 final size:5
Alignment explanation
Indices: 10512042--10512099 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
10512032 TTATAATAAT
*
10512042 ATTAA ATTTAA ATTAA ATTCAA ACTTAA ATTAA ATTAAA ATTTAA AATAA
1 ATTAA A-TTAA ATTAA ATT-AA A-TTAA ATTAA ATT-AA A-TTAA ATTAA
*
10512092 ATTTA ATT
1 ATTAA ATT
10512100 TCAAAGTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
5 24 0.53
6 17 0.38
7 4 0.09
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:10512069 original size:17 final size:17
Alignment explanation
Indices: 10512049--10512094 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
10512039 AATATTAAAT
*
10512049 TTAAATTAAATTCAAAC
1 TTAAATTAAATTAAAAC
*
10512066 TTAAATTAAATTAAAAT
1 TTAAATTAAATTAAAAC
*
10512083 TTAAAATAAATT
1 TTAAATTAAATT
10512095 TAATTTCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAATTAAATTAAAAC
Found at i:10512097 original size:28 final size:29
Alignment explanation
Indices: 10512046--10512118 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 29
10512036 AATAATATTA
* *
10512046 AATTTAAA-TTAAATTCAAACTTAAATTA
1 AATTAAAATTTAAAATCAAACTTAAATTA
* *
10512074 AATTAAAATTTAAAAT-AAATTTAATTTCA
1 AATTAAAATTTAAAATCAAACTTAAATT-A
* *
10512103 AAGTAAATTTTAAAAT
1 AATTAAAATTTAAAAT
10512119 GGTTTGGGCC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 16 0.43
29 21 0.57
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (29 bp):
AATTAAAATTTAAAATCAAACTTAAATTA
Found at i:10512109 original size:17 final size:16
Alignment explanation
Indices: 10512029--10512112 Score: 60
Period size: 17 Copynumber: 5.0 Consensus size: 16
10512019 GGACATTTTA
* *
10512029 AATTTATAATAATATTA
1 AATTTAAAATAA-ATTT
* *
10512046 AATTTAAATTAAATTCA
1 AATTTAAAATAAATT-T
* * *
10512063 AACTTAAATTAAATTAA
1 AATTTAAAATAAATT-T
10512080 AATTTAAAATAAATTT
1 AATTTAAAATAAATTT
*
10512096 AATTTCAAAGTAAATTT
1 AATTT-AAAATAAATTT
10512113 TAAAATGGTT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
16 8 0.14
17 49 0.86
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (16 bp):
AATTTAAAATAAATTT
Found at i:10512110 original size:34 final size:34
Alignment explanation
Indices: 10512045--10512111 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
10512035 TAATAATATT
* *
10512045 AAATTTAAATTAAATTCAAACTTAAATTAAATTA
1 AAATTTAAAATAAATTCAAACTTAAAGTAAATTA
* *
10512079 AAATTTAAAATAAATT-TAATTTCAAAGTAAATT
1 AAATTTAAAATAAATTCAAACTT-AAAGTAAATT
10512112 TTAAAATGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.39
Consensus pattern (34 bp):
AAATTTAAAATAAATTCAAACTTAAAGTAAATTA
Found at i:10512830 original size:92 final size:91
Alignment explanation
Indices: 10512716--10513386 Score: 992
Period size: 92 Copynumber: 7.3 Consensus size: 91
10512706 ATTTGGTATC
* * *
10512716 GAAGCTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10512781 ACTTCAAGAGGATAGGAATTTG-GTATC
66 ACTTCAAGAGGATAGGAA-TTGAGT-TT
*
10512808 GAAGTTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
10512873 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
10512900 GAAACTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCTATCC-A--TTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
10512962 ACTTCAAGAGGATTGGAATTAATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * * *
10512989 GAAACTTCATCTTACTCTTACTACAACTTCAAAGAGATAAAAACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10513054 ACTTCAAGAGGATGGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
10513081 GAACCTTCATTTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10513146 ATTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
10513173 AAAGCTTCATCTTACTCTTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
10513238 ACTTCAAGAGGATAAGG-ATTGATGTTT
66 ACTTCAAGAGGAT-AGGAATTGA-GTTT
* *
10513265 GAAGCTTCATCTTACTCTTACTACAACTTCAAAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10513330 ACTTCAAGAGGATAGGGATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
*
10513357 GAAGCTTTATCTTGCTCTTTACTACAACTT
1 GAAGCTTCATCTTGCTC-TTACTACAACTT
10513387 TAGACCTTTC
Statistics
Matches: 535, Mismatches: 36, Indels: 15
0.91 0.06 0.03
Matches are distributed among these distances:
89 82 0.15
90 1 0.00
91 7 0.01
92 428 0.80
93 17 0.03
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (91 bp):
GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
ACTTCAAGAGGATAGGAATTGAGTTT
Found at i:10513234 original size:40 final size:39
Alignment explanation
Indices: 10513190--10513339 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 39
10513180 CATCTTACTC
*
10513190 TTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACT
1 TTACTACAACTTCA-AGAGATAAAGACTTGCTATCCAACT
* **
10513230 TTACTACAACTTCAAGAGGATAAGGATTGATGTTTGAAGCTTCATCTTACT
1 TTACTACAACTTCAAGA-GATAA--A--GA--CTT---GC-T-ATCCAACT
10513281 CTTACTACAACTTCAAAGAGATAAAGACTTGCTATCCAACT
1 -TTACTACAACTTC-AAGAGATAAAGACTTGCTATCCAACT
10513322 TTACTACAACTTCAAGAG
1 TTACTACAACTTCAAGAG
10513340 GATAGGGATT
Statistics
Matches: 89, Mismatches: 7, Indels: 29
0.71 0.06 0.23
Matches are distributed among these distances:
39 8 0.09
40 31 0.35
41 6 0.07
42 2 0.02
43 2 0.02
44 2 0.02
46 4 0.04
48 2 0.02
49 2 0.02
50 2 0.02
51 6 0.07
52 18 0.20
53 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (39 bp):
TTACTACAACTTCAAGAGATAAAGACTTGCTATCCAACT
Found at i:10520247 original size:29 final size:28
Alignment explanation
Indices: 10520173--10520433 Score: 195
Period size: 30 Copynumber: 9.0 Consensus size: 28
10520163 GAAACATCCG
*
10520173 GGGGTTAAAATG-AA-TTTTGGAAGTGTC
1 GGGGTAAAAATGTAATTTTTGGAAGT-TC
* *
10520200 GGGGTCAAAATGGAATTTTTGGAAGTTC
1 GGGGTAAAAATGTAATTTTTGGAAGTTC
* *
10520228 GGGTTAAAAATGTAATTTTTGGAAGTTT
1 GGGGTAAAAATGTAATTTTTGGAAGTTC
* * * *
10520256 GAGGGTAAAAAAGTAATTGTTAGAAGTTTT
1 G-GGGTAAAAATGTAATTTTTGGAAG-TTC
*
10520286 AGGGTCAAAAATGTAATTTTT-GAATGTTC
1 GGGGT-AAAAATGTAATTTTTGGAA-GTTC
*
10520315 GGGGGTAAAAATGTAATTTTTAGAAGTTTC
1 -GGGGTAAAAATGTAATTTTTGGAAG-TTC
* *** *
10520345 GAGGTTAAAAATGTAATTTTCAAAAGTTTT
1 G-GGGTAAAAATGTAATTTTTGGAAG-TTC
* *
10520375 GAGGTTAAAAATGTAATTTTGGAGAAGTTC
1 G-GGGTAAAAATGTAATTTTTG-GAAGTTC
* **
10520405 GAGGGTCAAAATACAATTTTTGGACAGTT
1 G-GGGTAAAAATGTAATTTTTGGA-AGTT
10520434 TAGGGACCTT
Statistics
Matches: 195, Mismatches: 27, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
27 11 0.06
28 29 0.15
29 58 0.30
30 94 0.48
31 3 0.02
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (28 bp):
GGGGTAAAAATGTAATTTTTGGAAGTTC
Found at i:10520296 original size:30 final size:29
Alignment explanation
Indices: 10520201--10520438 Score: 212
Period size: 30 Copynumber: 8.1 Consensus size: 29
10520191 GGAAGTGTCG
* * * *
10520201 GGGTCAAAATGGAATTTTTGGAAGTTCG-
1 GGGTAAAAATGTAATTTTTAGAAGTTTGA
* *
10520229 GGTTAAAAATGTAATTTTTGGAAGTTTGA
1 GGGTAAAAATGTAATTTTTAGAAGTTTGA
* * *
10520258 GGGTAAAAAAGTAATTGTTAGAAGTTTTA
1 GGGTAAAAATGTAATTTTTAGAAGTTTGA
* *
10520287 GGGTCAAAAATGTAATTTTT-GAATGTTCGG
1 GGGT-AAAAATGTAATTTTTAGAA-GTTTGA
10520317 GGGTAAAAATGTAATTTTTAGAAGTTTCGA
1 GGGTAAAAATGTAATTTTTAGAAGTTT-GA
* * *
10520347 GGTTAAAAATGTAATTTTCAAAAGTTTTGA
1 GGGTAAAAATGTAATTTTTAGAAG-TTTGA
* * *
10520377 GGTTAAAAATGTAATTTTGGAGAAGTTCGA
1 GGGTAAAAATGTAATTTT-TAGAAGTTTGA
* ** *
10520407 GGGTCAAAATACAATTTTTGGACAGTTT-A
1 GGGTAAAAATGTAATTTTTAGA-AGTTTGA
10520436 GGG
1 GGG
10520439 ACCTTTAGGG
Statistics
Matches: 173, Mismatches: 29, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
28 24 0.14
29 55 0.32
30 87 0.50
31 7 0.04
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTTAGAAGTTTGA
Found at i:10520307 original size:59 final size:58
Alignment explanation
Indices: 10520179--10520438 Score: 196
Period size: 59 Copynumber: 4.5 Consensus size: 58
10520169 TCCGGGGGTT
* * * * * *
10520179 AAAATG-AA-TTTTGGAAGTGTCG-GGGTCAAAATGGAATTTTTGGAAG--TTCGGGTTA
1 AAAATGTAATTTTTGGAAGT-TTGAGGGTAAAAATGTAA-TTTTAGAAGTTTTAGGGTCA
*
10520234 AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAAAGTAATTGTTAGAAGTTTTAGGGTCA
1 AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTAATT-TTAGAAGTTTTAGGGTCA
* * * *
10520293 AAAATGTAATTTTT-GAATGTTCGGGGGTAAAAATGTAATTTTTAGAAG-TTTCGAGGTTA
1 AAAATGTAATTTTTGGAA-GTTTGAGGGTAAAAATGTAA-TTTTAGAAGTTTTAG-GGTCA
*** * **
10520352 AAAATGTAATTTTCAAAAGTTTTGAGGTTAAAAATGTAATTTTGGAGAAGTTCGAGGGTC-
1 AAAATGTAATTTTTGGAAG-TTTGAGGGTAAAAATGTAATTTT--AGAAGTTTTAGGGTCA
**
10520412 AAAATACAATTTTTGGACAGTTT-AGGG
1 AAAATGTAATTTTTGGA-AGTTTGAGGG
10520439 ACCTTTAGGG
Statistics
Matches: 163, Mismatches: 27, Indels: 26
0.75 0.12 0.12
Matches are distributed among these distances:
55 6 0.04
56 6 0.04
57 27 0.17
58 7 0.04
59 70 0.43
60 35 0.21
61 10 0.06
62 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.35
Consensus pattern (58 bp):
AAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTTAGAAGTTTTAGGGTCA
Found at i:10521601 original size:22 final size:22
Alignment explanation
Indices: 10521570--10521617 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
10521560 GTTTTAAAAA
*
10521570 ATTAAATATTAATTAATATATT
1 ATTAAATATTAACTAATATATT
* * *
10521592 ATTAATTATTTACTATTATATT
1 ATTAAATATTAACTAATATATT
10521614 ATTA
1 ATTA
10521618 TTAAATCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTAAATATTAACTAATATATT
Found at i:10521642 original size:19 final size:20
Alignment explanation
Indices: 10521615--10521652 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
10521605 TATTATATTA
*
10521615 TTATTAAATCTA-TTAATAT
1 TTATAAAATCTATTTAATAT
*
10521634 TTATAAAATGTATTTAATA
1 TTATAAAATCTATTTAATA
10521653 CTCCTTTGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (20 bp):
TTATAAAATCTATTTAATAT
Found at i:10522438 original size:6 final size:6
Alignment explanation
Indices: 10522429--10522481 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
10522419 TACAATAATA
* *
10522429 TTAAAT TTAAA- TTAAAT TCAAAC TTAAA- TTAAAT TT-AA- -TAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
10522472 TTAAAT TTAA
1 TTAAAT TTAA
10522482 TTTCAAAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
3 1 0.03
4 2 0.05
5 12 0.31
6 24 0.62
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (6 bp):
TTAAAT
Found at i:10522445 original size:5 final size:5
Alignment explanation
Indices: 10522428--10522483 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
10522418 TTACAATAAT
*
10522428 ATTAA ATTTAA ATTAA ATTCAA ACTTAA ATTAA ATTTA A-TAA ATTTAA
1 ATTAA A-TTAA ATTAA ATT-AA A-TTAA ATTAA ATTAA ATTAA A-TTAA
*
10522476 ATTTA ATT
1 ATTAA ATT
10522484 TCAAAGTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 3 0.07
5 23 0.53
6 15 0.35
7 2 0.05
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (5 bp):
ATTAA
Found at i:10529033 original size:18 final size:18
Alignment explanation
Indices: 10528979--10529035 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
10528969 ATTAATTAAT
*
10528979 ATATTATTAATTTACTATTA
1 ATATTATTAA-ATA-TATTA
* *
10528999 TTATTATTAAATCTATTA
1 ATATTATTAAATATATTA
10529017 ATATTATTAGAA-ATATTA
1 ATATTATTA-AATATATTA
10529035 A
1 A
10529036 CACCATTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
18 19 0.61
19 3 0.10
20 9 0.29
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (18 bp):
ATATTATTAAATATATTA
Found at i:10529862 original size:28 final size:28
Alignment explanation
Indices: 10529849--10529914 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
10529839 CAATAATATC
10529849 AAATTTAAATTAAATTTAAATTAAATTA
1 AAATTTAAATTAAATTTAAATTAAATTA
* * *
10529877 AAATTTAAAATAAATTTAATTTCAAAGTA
1 AAATTTAAATTAAATTTAAATT-AAATTA
*
10529906 AATTTTAAA
1 AAATTTAAA
10529915 ATGGTTTGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 20 0.61
29 13 0.39
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (28 bp):
AAATTTAAATTAAATTTAAATTAAATTA
Found at i:10529865 original size:11 final size:11
Alignment explanation
Indices: 10529849--10529910 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
10529839 CAATAATATC
10529849 AAATTTAAATT
1 AAATTTAAATT
10529860 AAATTTAAATT
1 AAATTTAAATT
*
10529871 AAATTAAAATTT
1 AAATTTAAA-TT
*
10529883 AAA-ATAAATT
1 AAATTTAAATT
* *
10529893 TAATTTCAAAGT
1 AAATTT-AAATT
10529905 AAATTT
1 AAATTT
10529911 TAAAATGGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
10 4 0.10
11 23 0.56
12 14 0.34
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
AAATTTAAATT
Found at i:10529869 original size:17 final size:17
Alignment explanation
Indices: 10529853--10529910 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
10529843 AATATCAAAT
10529853 TTAAA-TTAAATTTAAA
1 TTAAATTTAAATTTAAA
*
10529869 TTAAATTAAAATTTAAA
1 TTAAATTTAAATTTAAA
*
10529886 ATAAATTT-AATTTCAAA
1 TTAAATTTAAATTT-AAA
*
10529903 GTAAATTT
1 TTAAATTT
10529911 TAAAATGGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
16 10 0.28
17 26 0.72
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (17 bp):
TTAAATTTAAATTTAAA
Found at i:10551277 original size:168 final size:168
Alignment explanation
Indices: 10550999--10551517 Score: 860
Period size: 168 Copynumber: 3.1 Consensus size: 168
10550989 TCGAGGATGA
* *
10550999 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACAAATAAAT
1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT
*
10551064 AACAATCAGCAGTTGACCAGCTCACAGGCTGGATTAGACTTCAATTTTACAGGTCATCCAAATAG
66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCAAATAG
*
10551129 TACATCTTCCAGACCATGTCCAATGCCAGGGGTGATAG
131 TTCATCTTCCAGACCATGTCCAATGCCAGGGGTGATAG
* *
10551167 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACCAATTCAGCACCAATGAGT
1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT
* *
10551232 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCGTCCGAATAG
66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCAAATAG
* *
10551297 TTCATCTTCCAAACCATGTCCAATGCCAGGGGTGATTG
131 TTCATCTTCCAGACCATGTCCAATGCCAGGGGTGATAG
*
10551335 AAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT
1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT
*
10551400 AACGATCAGCAGTTGACCAGCTCAC-GGCTGGCTTAGACTTCAATTTTACAGGTCATCCAAATAG
66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCAAATAG
10551464 TTCATCTTCCGGAGTCCAGACCATGTCCAATGCCAGGGGTGATAG
131 TTCATC-T------TCCAGACCATGTCCAATGCCAGGGGTGATAG
10551509 GAGGACAAC
1 GAGGACAAC
10551518 CATCATCTTC
Statistics
Matches: 325, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
167 43 0.13
168 245 0.75
174 37 0.11
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (168 bp):
GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT
AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCAAATAG
TTCATCTTCCAGACCATGTCCAATGCCAGGGGTGATAG
Found at i:10561333 original size:168 final size:168
Alignment explanation
Indices: 10561055--10561573 Score: 797
Period size: 168 Copynumber: 3.1 Consensus size: 168
10561045 GTCGAGGTGA
* * * *
10561055 GAGGACAACATCCATCACAACAGATTCAATCATCAGCTCTGCATTCTAATTCAGCACAAATGAAT
1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCTGCATACAAATTCAGCACCAATGAAT
* *
10561120 AACAATCAGCAGTTGACCAGCTCACAGGCTGGATTAGACTTCAATTTTACAGGTTATCCGAATAG
66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCGAATAG
*
10561185 TACATCTTCCAGACCATGTCCAATGCCAGGGGTGATAG
131 TTCATCTTCCAGACCATGTCCAATGCCAGGGGTGATAG
* *
10561223 GAGGACAACATCCATCACAACAGATTCAAGCATCAACTCTGCATACAAATTCAGCACCAATGAGT
1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCTGCATACAAATTCAGCACCAATGAAT
*
10561288 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCGTCCGAATAG
66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCGAATAG
* *
10561353 TTCATCTTCCACACCATGTCCAATGCCAGGGGTGATTG
131 TTCATCTTCCAGACCATGTCCAATGCCAGGGGTGATAG
* * **
10561391 AAGGACAACATCCATAACAACAGATTCAAGCATCAGCTCCACATACAAATTCAGCACCAATGAAT
1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCTGCATACAAATTCAGCACCAATGAAT
* * *
10561456 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCGATTTTACAGGTCAT-CAAAAAG
66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCGAATAG
10561520 TTCATCTTCCAGAGTCCAGACCATGTCCAATGCCAGGGGTGATAG
131 TTCATC-T------TCCAGACCATGTCCAATGCCAGGGGTGATAG
10561565 GAGGACAAC
1 GAGGACAAC
10561574 CATCATCTTC
Statistics
Matches: 319, Mismatches: 25, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
167 11 0.03
168 271 0.85
174 37 0.12
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (168 bp):
GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCTGCATACAAATTCAGCACCAATGAAT
AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAGGTCATCCGAATAG
TTCATCTTCCAGACCATGTCCAATGCCAGGGGTGATAG
Found at i:10566493 original size:24 final size:24
Alignment explanation
Indices: 10566461--10566506 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
10566451 TCATTTAATT
*
10566461 TAATCGAACATGTTCATGAACATA
1 TAATCGAACATGTTCACGAACATA
*
10566485 TAATTGAACATGTTCACGAACA
1 TAATCGAACATGTTCACGAACA
10566507 ATGTTAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (24 bp):
TAATCGAACATGTTCACGAACATA
Found at i:10572882 original size:21 final size:21
Alignment explanation
Indices: 10572842--10572883 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10572832 TTGATCGATG
*
10572842 GCTTAGCATGCAGCATGAAGA
1 GCTTACCATGCAGCATGAAGA
10572863 GCTTACCA-GCAGCATGGAAGA
1 GCTTACCATGCAGCAT-GAAGA
10572884 ATTAGATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (21 bp):
GCTTACCATGCAGCATGAAGA
Found at i:10575129 original size:20 final size:21
Alignment explanation
Indices: 10575086--10575129 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
10575076 ACTTTCATCA
*
10575086 TTAAGCCTTAATTAAACATTT
1 TTAAGCCTTAATTAAACATAT
* *
10575107 TTAA-CCTTTATTAAACCTAT
1 TTAAGCCTTAATTAAACATAT
10575127 TTA
1 TTA
10575130 TAAATAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.45
Consensus pattern (21 bp):
TTAAGCCTTAATTAAACATAT
Found at i:10581423 original size:28 final size:29
Alignment explanation
Indices: 10581392--10581452 Score: 90
Period size: 28 Copynumber: 2.1 Consensus size: 29
10581382 AAAATGAGAC
10581392 TTTTAGA-TACTCGAGGGC-AAAATGGTAA
1 TTTTAGACT-CTCGAGGGCAAAAATGGTAA
*
10581420 TTTTGGACTCTCGAGGGCAAAAATGGTAA
1 TTTTAGACTCTCGAGGGCAAAAATGGTAA
10581449 TTTT
1 TTTT
10581453 GGAAAAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (29 bp):
TTTTAGACTCTCGAGGGCAAAAATGGTAA
Found at i:10581451 original size:29 final size:28
Alignment explanation
Indices: 10581401--10581455 Score: 101
Period size: 29 Copynumber: 1.9 Consensus size: 28
10581391 CTTTTAGATA
10581401 CTCGAGGGCAAAATGGTAATTTTGGACT
1 CTCGAGGGCAAAATGGTAATTTTGGACT
10581429 CTCGAGGGCAAAAATGGTAATTTTGGA
1 CTCGAGGGC-AAAATGGTAATTTTGGA
10581456 AAAATTTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (28 bp):
CTCGAGGGCAAAATGGTAATTTTGGACT
Found at i:10581582 original size:28 final size:28
Alignment explanation
Indices: 10581551--10581809 Score: 218
Period size: 29 Copynumber: 9.0 Consensus size: 28
10581541 AAAACATCTG
*
10581551 GGGGTAAAAAGGTAA-TTTTGGAAGTGTC
1 GGGGTAAAAATGTAATTTTTGGAAGT-TC
*
10581579 GGGGTCAAAAATGGAATTTTTGGAAGTTC
1 GGGGT-AAAAATGTAATTTTTGGAAGTTC
* *
10581608 GGGGTTAAAAATGTAATTTTTGGTAGTTTA
1 GGGG-TAAAAATGTAATTTTTGGAAG-TTC
* * * *
10581638 GTGGCAAAAATGTAATTTTTGGTAGTTTA
1 GGGGTAAAAATGTAATTTTTGGAAG-TTC
* *
10581667 GGGGCAAAATTGTAATTTTT-GAAGTTC
1 GGGGTAAAAATGTAATTTTTGGAAGTTC
* *
10581694 GAGAGAAAAAATGTAATTTTTGGAAGTTC
1 G-GGGTAAAAATGTAATTTTTGGAAGTTC
* * *
10581723 GAGGG-CAAAATGTAATTTTTGAAAGTTTTA
1 G-GGGTAAAAATGTAATTTTTGGAAG--TTC
* *
10581753 GGGTTAAAAATGTAATTTTAGAGAAGTTC
1 GGGGTAAAAATGTAATTTTTG-GAAGTTC
* * *
10581782 AGGGTCAAAATATAATTTTTGGACAGTT
1 GGGGTAAAAATGTAATTTTTGGA-AGTT
10581810 TAGGGACCTT
Statistics
Matches: 192, Mismatches: 28, Indels: 21
0.80 0.12 0.09
Matches are distributed among these distances:
27 3 0.02
28 44 0.23
29 109 0.57
30 33 0.17
31 3 0.02
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (28 bp):
GGGGTAAAAATGTAATTTTTGGAAGTTC
Found at i:10581707 original size:86 final size:87
Alignment explanation
Indices: 10581556--10581809 Score: 252
Period size: 86 Copynumber: 2.9 Consensus size: 87
10581546 ATCTGGGGGT
* * * * * *
10581556 AAAAAGGTAA-TTTTGGAAGTGTCGGGGTCAAAAATGGAATTTTTGGAAGTTCGGGGTTAAAAAT
1 AAAAATGTAATTTTTGGAAGTTTAGGGG-CAAAAATGTAATTTTTGGAAGTTCGGAGTAAAAAAT
* *
10581620 GTAATTTTTGGTAGTT-TAGTGGC
65 GTAATTTTTGGAAGTTCGAG-GGC
* *
10581643 AAAAATGTAATTTTTGGTAGTTTAGGGGCAAAATTGTAATTTTT-GAAGTTCGAGAG-AAAAAAT
1 AAAAATGTAATTTTTGGAAGTTTAGGGGCAAAAATGTAATTTTTGGAAGTTCG-GAGTAAAAAAT
10581706 GTAATTTTTGGAAGTTCGAGGGC
65 GTAATTTTTGGAAGTTCGAGGGC
* ** * *
10581729 -AAAATGTAATTTTTGAAAGTTTTAGGGTTAAAAATGTAATTTTAGAGAAGTTCAGG-GT-CAAA
1 AAAAATGTAATTTTTGGAAG-TTTAGGGGCAAAAATGTAATTTTTG-GAAGTTC-GGAGTAAAAA
*
10581791 ATATAATTTTTGGACAGTT
63 ATGTAATTTTTGGA-AGTT
10581810 TAGGGACCTT
Statistics
Matches: 140, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
85 17 0.12
86 52 0.37
87 44 0.31
88 26 0.19
89 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (87 bp):
AAAAATGTAATTTTTGGAAGTTTAGGGGCAAAAATGTAATTTTTGGAAGTTCGGAGTAAAAAATG
TAATTTTTGGAAGTTCGAGGGC
Found at i:10583886 original size:11 final size:11
Alignment explanation
Indices: 10583870--10583925 Score: 69
Period size: 11 Copynumber: 5.0 Consensus size: 11
10583860 TTATAATAAT
10583870 ATTAAATTTAA
1 ATTAAATTTAA
*
10583881 ATTAAATTCAA
1 ATTAAATTTAA
10583892 ACTTAAA-TTAA
1 A-TTAAATTTAA
10583903 ATTAAAATTTAA
1 ATT-AAATTTAA
*
10583915 AATAAATTTAA
1 ATTAAATTTAA
10583926 TTTTAAAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
10 2 0.05
11 26 0.67
12 11 0.28
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:10583887 original size:5 final size:5
Alignment explanation
Indices: 10583870--10583927 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
10583860 TTATAATAAT
*
10583870 ATTAA ATTTAA ATTAA ATTCAA ACTTAA ATTAA ATTAAA ATTTAA AATAA
1 ATTAA A-TTAA ATTAA ATT-AA A-TTAA ATTAA ATT-AA A-TTAA ATTAA
*
10583920 ATTTA ATT
1 ATTAA ATT
10583928 TTAAAGTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
5 24 0.53
6 17 0.38
7 4 0.09
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:10583925 original size:28 final size:30
Alignment explanation
Indices: 10583866--10583946 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 30
10583856 AAATTTATAA
* *
10583866 TAATATTAAATTTAAA-TTAAATTCAAACT
1 TAATATTAAATTAAAATTTAAAATCAAACT
*
10583895 TAA-ATTAAATTAAAATTTAAAAT-AAATT
1 TAATATTAAATTAAAATTTAAAATCAAACT
* * *
10583923 TAATTTTAAAGTAAATTTTAAAAT
1 TAATATTAAATTAAAATTTAAAAT
10583947 GGTTTGGGCC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 18 0.41
29 26 0.59
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (30 bp):
TAATATTAAATTAAAATTTAAAATCAAACT
Found at i:10583930 original size:17 final size:17
Alignment explanation
Indices: 10583853--10583940 Score: 88
Period size: 17 Copynumber: 5.2 Consensus size: 17
10583843 TAATGGACAT
*
10583853 TTTAAATTTATAAT-AA
1 TTTAAATTTAAAATAAA
*
10583869 TATTAAATTTAAATTAAA
1 T-TTAAATTTAAAATAAA
* * *
10583887 TTCAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
*
10583904 TTAAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
* *
10583921 TTTAATTTTAAAGTAAA
1 TTTAAATTTAAAATAAA
10583938 TTT
1 TTT
10583941 TAAAATGGTT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
16 1 0.02
17 56 0.93
18 3 0.05
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:10584643 original size:92 final size:91
Alignment explanation
Indices: 10584542--10585211 Score: 1008
Period size: 92 Copynumber: 7.3 Consensus size: 91
10584532 ATTTGGTATC
* *
10584542 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10584607 ACTTCAAGAGGATAGGAATTTG-GTATC
66 ACTTCAAGAGGATAGGAA-TTGAGT-TT
* *
10584634 GAAGTTTCATCTTGCTCTTACTACAACTTCAAAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
10584699 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
10584726 GAAACTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCTATCC-A--TTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
10584788 ACTTCAAGAGGATTGGAATTAATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
10584815 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAAACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10584880 ACTTCAAGAGGATGGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
10584907 GAACCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10584972 ATTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
10584999 AAAGCTTCATCTTACTCTTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
10585064 ACTTCAAGAGGATAAGG-ATTGATGTTT
66 ACTTCAAGAGGAT-AGGAATTGA-GTTT
* *
10585091 GAAACTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10585156 ACTTCAAGAGGATAGGGATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
10585183 GAAGCTTTATCTTGCTTTTACTACAACTT
1 GAAGCTTCATCTTGCTCTTACTACAACTT
10585212 TAGACCTTTC
Statistics
Matches: 536, Mismatches: 35, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
89 83 0.15
90 1 0.00
91 7 0.01
92 440 0.82
93 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (91 bp):
GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
ACTTCAAGAGGATAGGAATTGAGTTT
Found at i:10585060 original size:40 final size:39
Alignment explanation
Indices: 10585016--10585165 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 39
10585006 CATCTTACTC
*
10585016 TTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACT
1 TTACTACAACTTCA-AGAGATAAAGACTTGCTATCCAACT
* **
10585056 TTACTACAACTTCAAGAGGATAAGGATTGATGTTTGAAACTTCATCTTACT
1 TTACTACAACTTCAAGA-GATAA--A--GA--CTTG---C-T-ATCCAACT
10585107 CTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACT
1 -TTACTACAACTTCA-AGAGATAAAGACTTGCTATCCAACT
10585148 TTACTACAACTTCAAGAG
1 TTACTACAACTTCAAGAG
10585166 GATAGGGATT
Statistics
Matches: 89, Mismatches: 7, Indels: 29
0.71 0.06 0.23
Matches are distributed among these distances:
39 7 0.08
40 32 0.36
41 6 0.07
42 2 0.02
43 1 0.01
44 2 0.02
46 6 0.07
48 2 0.02
49 1 0.01
50 2 0.02
51 6 0.07
52 19 0.21
53 3 0.03
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (39 bp):
TTACTACAACTTCAAGAGATAAAGACTTGCTATCCAACT
Found at i:10585305 original size:50 final size:50
Alignment explanation
Indices: 10585247--10585376 Score: 154
Period size: 50 Copynumber: 2.6 Consensus size: 50
10585237 AGGTACACAG
* * *
10585247 TCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATTTTTGCGGTACTGGA
1 TCCGCCGTTGCGTCTTAGATCTTTCCCTTTCGTATTTTTGCGGTACTGGA
* * * * *
10585297 TTCTCCGTTGCGGTCTTAGATCTTTCCC-GTCGTGTTTTTGTGGTACTGGA
1 TCCGCCGTTGC-GTCTTAGATCTTTCCCTTTCGTATTTTTGCGGTACTGGA
*
10585347 TCCGCCGTTGTGGTCTTAGATCTTTCCCTT
1 TCCGCCGTTG-CGTCTTAGATCTTTCCCTT
10585377 CGAATTTCAT
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
50 51 0.78
51 14 0.22
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.42
Consensus pattern (50 bp):
TCCGCCGTTGCGTCTTAGATCTTTCCCTTTCGTATTTTTGCGGTACTGGA
Found at i:10586309 original size:12 final size:13
Alignment explanation
Indices: 10586261--10586310 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 13
10586251 GACCTCTCCT
10586261 TTTTTCTATT-TTG
1 TTTTTCT-TTCTTG
10586274 TTTTTC-TTCTTG
1 TTTTTCTTTCTTG
10586286 TTTTTGCATTTCTT-
1 TTTTT-C-TTTCTTG
10586300 TTTTTCTTTCT
1 TTTTTCTTTCT
10586311 CTTCTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
11 2 0.06
12 13 0.39
13 8 0.24
14 5 0.15
15 5 0.15
ACGTcount: A:0.04, C:0.14, G:0.06, T:0.76
Consensus pattern (13 bp):
TTTTTCTTTCTTG
Found at i:10588067 original size:11 final size:12
Alignment explanation
Indices: 10588041--10588068 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
10588031 AATGAACGGT
10588041 AAAATGCATGCA
1 AAAATGCATGCA
10588053 AAAATGCATGCA
1 AAAATGCATGCA
10588065 AAAA
1 AAAA
10588069 GTCCTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (12 bp):
AAAATGCATGCA
Found at i:10591876 original size:28 final size:27
Alignment explanation
Indices: 10591845--10591906 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
10591835 AAAATGAGAC
*
10591845 TTTTGGATACCCGGGGGCAAAATGGTAA
1 TTTTGGAT-CCCGGGGGAAAAATGGTAA
* * **
10591873 TTTTAGATTCTTGGGGAAAAATGGTAA
1 TTTTGGATCCCGGGGGAAAAATGGTAA
10591900 TTTTGGA
1 TTTTGGA
10591907 AAAATTTGGG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (27 bp):
TTTTGGATCCCGGGGGAAAAATGGTAA
Found at i:10592085 original size:29 final size:28
Alignment explanation
Indices: 10592008--10592226 Score: 170
Period size: 29 Copynumber: 7.4 Consensus size: 28
10591998 TCCGGGGGTT
* * * *
10592008 AAATGGTAATTTTGGAAGTGTCGGGGTCA
1 AAAT-GTAATTTTTGAAGTTTGGGGGTAA
* *
10592037 AAATGGAATTTTTGGAAGTTTGGGGGCAA
1 AAATGTAATTTTT-GAAGTTTGGGGGTAA
* *
10592066 AAATGTAATTTTTGGTAGTTTGAGGGTAA
1 AAATGTAATTTTT-GAAGTTTGGGGGTAA
* *
10592095 AAATGTAATTGTTAT-AAGTTTTAGGGTTAA
1 AAATGTAATT-TT-TGAAG-TTTGGGGGTAA
*
10592125 AAATGTAATTTTTGAATGTTCGGGGGTAA
1 AAATGTAATTTTTGAA-GTTTGGGGGTAA
* *
10592154 AAATGTAATTTTTAGAAGTTTCGAAGGTTAA
1 AAATGTAATTTTT-GAAGTTT-G-GGGGTAA
** * *
10592185 AAATGTAATTTTCAAAAGTTTTGAGGTTAA
1 AAATGTAATTTT-TGAAG-TTTGGGGGTAA
10592215 AAATGTAATTTT
1 AAATGTAATTTT
10592227 GGAGAAGTGC
Statistics
Matches: 157, Mismatches: 22, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
28 8 0.05
29 80 0.51
30 44 0.28
31 22 0.14
32 3 0.02
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (28 bp):
AAATGTAATTTTTGAAGTTTGGGGGTAA
Found at i:10592128 original size:30 final size:29
Alignment explanation
Indices: 10592064--10592226 Score: 147
Period size: 30 Copynumber: 5.5 Consensus size: 29
10592054 GTTTGGGGGC
*
10592064 AAAAATGTAATTTT-TGGTAGTTTGAGGG-T
1 AAAAATGTAATTTTAT--AAGTTTGAGGGTT
*
10592093 AAAAATGTAATTGTTATAAGTTTTAGGGTT
1 AAAAATGTAATT-TTATAAGTTTGAGGGTT
* *
10592123 AAAAATGTAATTTT-TGAATGTTCG-GGGGT
1 AAAAATGTAATTTTAT-AA-GTTTGAGGGTT
* *
10592152 AAAAATGTAATTTTTAGAAGTTTCGAAGGTT
1 AAAAATGTAA-TTTTATAAGTTT-GAGGGTT
*
10592183 AAAAATGTAATTTTCAAAAGTTTTGA-GGTT
1 AAAAATGTAATTTT-ATAAG-TTTGAGGGTT
10592213 AAAAATGTAATTTT
1 AAAAATGTAATTTT
10592227 GGAGAAGTGC
Statistics
Matches: 113, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
28 1 0.01
29 42 0.37
30 47 0.42
31 20 0.18
32 3 0.03
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40
Consensus pattern (29 bp):
AAAAATGTAATTTTATAAGTTTGAGGGTT
Found at i:10592138 original size:59 final size:59
Alignment explanation
Indices: 10592064--10592224 Score: 189
Period size: 59 Copynumber: 2.7 Consensus size: 59
10592054 GTTTGGGGGC
* * * *
10592064 AAAAATGTAATTTTTGGTAGTTTGAGGGTAAAAATGTAATTGTTATAAGTTT-TAGGGTT
1 AAAAATGTAATTTTT-GAAGTTTGAGGGTAAAAATGTAATTGTTAGAAGTTTCGAAGGTT
* * *
10592123 AAAAATGTAATTTTTGAATGTTCGGGGGTAAAAATGTAATTTTTAGAAGTTTCGAAGGTT
1 AAAAATGTAATTTTTGAA-GTTTGAGGGTAAAAATGTAATTGTTAGAAGTTTCGAAGGTT
** *
10592183 AAAAATGTAATTTTCAAAAGTTTTGAGGTTAAAAATGTAATT
1 AAAAATGTAATTTT-TGAAG-TTTGAGGGTAAAAATGTAATT
10592225 TTGGAGAAGT
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
58 2 0.02
59 44 0.51
60 20 0.23
61 20 0.23
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40
Consensus pattern (59 bp):
AAAAATGTAATTTTTGAAGTTTGAGGGTAAAAATGTAATTGTTAGAAGTTTCGAAGGTT
Found at i:10592582 original size:32 final size:33
Alignment explanation
Indices: 10592532--10592602 Score: 110
Period size: 32 Copynumber: 2.2 Consensus size: 33
10592522 AATTACTGGG
10592532 CTAAATTAAAATTAATT-AAAAATACAAGAAGGA
1 CTAAATTAAAATTAATTAAAAAATAC-AGAAGGA
*
10592565 CTAAATTGAAA-TAATTAAAAAATACAGAAGGA
1 CTAAATTAAAATTAATTAAAAAATACAGAAGGA
10592597 CTAAAT
1 CTAAAT
10592603 ACGCAAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
32 18 0.50
33 18 0.50
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.24
Consensus pattern (33 bp):
CTAAATTAAAATTAATTAAAAAATACAGAAGGA
Found at i:10592586 original size:33 final size:32
Alignment explanation
Indices: 10592499--10592602 Score: 108
Period size: 32 Copynumber: 3.3 Consensus size: 32
10592489 AAAAGTCAAG
** * *
10592499 GGACTAAATTGAAAAGAAATTAAAATTACTG--
1 GGACTAAATT-AAAATTAATTAAAAATACAGAA
10592530 GG-CTAAATTAAAATTAATTAAAAATACAAGAA
1 GGACTAAATTAAAATTAATTAAAAATAC-AGAA
*
10592562 GGACTAAATTGAAA-TAATTAAAAAATACAGAA
1 GGACTAAATTAAAATTAATT-AAAAATACAGAA
10592594 GGACTAAAT
1 GGACTAAAT
10592603 ACGCAAATAA
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
29 15 0.24
30 8 0.13
31 2 0.03
32 20 0.32
33 18 0.29
ACGTcount: A:0.56, C:0.07, G:0.13, T:0.24
Consensus pattern (32 bp):
GGACTAAATTAAAATTAATTAAAAATACAGAA
Found at i:10593647 original size:11 final size:11
Alignment explanation
Indices: 10593631--10593695 Score: 71
Period size: 11 Copynumber: 5.8 Consensus size: 11
10593621 TTACAGTAAT
10593631 ATTAAATTTAA
1 ATTAAATTTAA
*
10593642 ATTAAATTCAA
1 ATTAAATTTAA
10593653 ACTTAAA-TTAA
1 A-TTAAATTTAA
10593664 ATTTAAA-TTAA
1 A-TTAAATTTAA
10593675 ATTAAATTTCAA
1 ATTAAATTT-AA
*
10593687 AGTAAATTT
1 ATTAAATTT
10593696 TAAAATGGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
10 5 0.11
11 27 0.57
12 15 0.32
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:10593648 original size:5 final size:5
Alignment explanation
Indices: 10593631--10593682 Score: 68
Period size: 5 Copynumber: 9.6 Consensus size: 5
10593621 TTACAGTAAT
10593631 ATTAA ATTTAA ATTAA ATTCAA ACTTAA ATTAA ATTTAA ATTAA ATTAA
1 ATTAA A-TTAA ATTAA ATT-AA A-TTAA ATTAA A-TTAA ATTAA ATTAA
10593680 ATT
1 ATT
10593683 TCAAAGTAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
5 25 0.58
6 16 0.37
7 2 0.05
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (5 bp):
ATTAA
Found at i:10593658 original size:17 final size:16
Alignment explanation
Indices: 10593638--10593694 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 16
10593628 AATATTAAAT
10593638 TTAAATTAAATTCAAA
1 TTAAATTAAATTCAAA
*
10593654 CTTAAATTAAATTTAAA
1 -TTAAATTAAATTCAAA
10593671 TTAAATTAAATTTCAAA
1 TTAAATTAAA-TTCAAA
*
10593688 GTAAATT
1 TTAAATT
10593695 TTAAAATGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
16 10 0.28
17 26 0.72
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (16 bp):
TTAAATTAAATTCAAA
Found at i:10593662 original size:28 final size:28
Alignment explanation
Indices: 10593631--10593695 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
10593621 TTACAGTAAT
10593631 ATTAAATTTAAATTAAATTCAAACTT-AA
1 ATTAAATTTAAATTAAATT-AAACTTCAA
*
10593659 ATTAAATTTAAATTAAATTAAATTTCAA
1 ATTAAATTTAAATTAAATTAAACTTCAA
*
10593687 AGTAAATTT
1 ATTAAATTT
10593696 TAAAATGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 5 0.15
28 29 0.85
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (28 bp):
ATTAAATTTAAATTAAATTAAACTTCAA
Found at i:10600303 original size:16 final size:16
Alignment explanation
Indices: 10600253--10600303 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
10600243 TATTGAGAAA
10600253 AAAATGTAATACAAAAT
1 AAAATGTAATAC-AAAT
*
10600270 AAAAT-TAGATA-ATTAT
1 AAAATGTA-ATACA-AAT
10600286 AAAATGTAATACAAAT
1 AAAATGTAATACAAAT
10600302 AA
1 AA
10600304 TGCAAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
15 1 0.04
16 16 0.57
17 11 0.39
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (16 bp):
AAAATGTAATACAAAT
Found at i:10614727 original size:21 final size:21
Alignment explanation
Indices: 10614687--10614728 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10614677 TTGATCGATG
*
10614687 GCTTAGCATGCAGCATGAAGA
1 GCTTACCATGCAGCATGAAGA
10614708 GCTTACCA-GCAGCATGGAAGA
1 GCTTACCATGCAGCAT-GAAGA
10614729 ATTAGATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (21 bp):
GCTTACCATGCAGCATGAAGA
Found at i:10616977 original size:20 final size:21
Alignment explanation
Indices: 10616934--10616977 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
10616924 ACTTTCATCA
*
10616934 TTAAGCCTTAATTAAACATTT
1 TTAAGCCTTAATTAAACATAT
* *
10616955 TTAA-CCTTTATTAAACCTAT
1 TTAAGCCTTAATTAAACATAT
10616975 TTA
1 TTA
10616978 TAAATAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.45
Consensus pattern (21 bp):
TTAAGCCTTAATTAAACATAT
Found at i:10623277 original size:28 final size:28
Alignment explanation
Indices: 10623246--10623305 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
10623236 AAAATGAGAC
*
10623246 TTTTAGA-TACCCGAGGGAAAAATGGTAA
1 TTTTAGACT-CCCAAGGGAAAAATGGTAA
* * *
10623274 TTTTGGACTCTCAAGGGCAAAATGGTAA
1 TTTTAGACTCCCAAGGGAAAAATGGTAA
10623302 TTTT
1 TTTT
10623306 GGAAAAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 26 0.96
29 1 0.04
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (28 bp):
TTTTAGACTCCCAAGGGAAAAATGGTAA
Found at i:10623573 original size:29 final size:29
Alignment explanation
Indices: 10623406--10623596 Score: 192
Period size: 29 Copynumber: 6.6 Consensus size: 29
10623396 ACATCTGGGA
*
10623406 GTAAAAAGGTAA-TTTTGGAAGTGTCG-GG
1 GTAAAAATGTAATTTTTGGAAGT-TCGAGG
*
10623434 GTCAAAAATGGAATTTTTGGAAGTTC-AGG
1 GT-AAAAATGTAATTTTTGGAAGTTCGAGG
* *
10623463 GTTAAAAATGTAATTTTTGGTAGTT-TAGGG
1 G-TAAAAATGTAATTTTTGGAAGTTCGA-GG
* * *
10623493 GCAAAATTGTAATTTCTGGAAGTTCGAGG
1 GTAAAAATGTAATTTTTGGAAGTTCGAGG
*
10623522 GTAAAAATGTAATTTTTGTAAGTTCGAGG
1 GTAAAAATGTAATTTTTGGAAGTTCGAGG
** **
10623551 GTAAAAATGTAATTTTTAAAAGTTTTAGG
1 GTAAAAATGTAATTTTTGGAAGTTCGAGG
*
10623580 GTTAAAAATATAATTTT
1 G-TAAAAATGTAATTTT
10623597 AGAAAAGTTT
Statistics
Matches: 137, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
28 2 0.01
29 106 0.77
30 29 0.21
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.37
Consensus pattern (29 bp):
GTAAAAATGTAATTTTTGGAAGTTCGAGG
Found at i:10623575 original size:87 final size:88
Alignment explanation
Indices: 10623414--10623580 Score: 234
Period size: 87 Copynumber: 1.9 Consensus size: 88
10623404 GAGTAAAAAG
10623414 GTAATTTTGGAAGTGTCGGGGTCAAAAATGGAATTTTTGGAAGTTCAGGGTTAAAAATGTAATTT
1 GTAATTTTGGAAGTGTCGGGGTCAAAAATGGAATTTTTGGAAGTTCAGGGTTAAAAATGTAATTT
***
10623479 TTGGTAG-TTTAGGGGCAAAATT
66 TTAAAAGTTTTAGGGGCAAAATT
* *
10623501 GTAATTTCTGGAAGT-TCGAGGGT-AAAAATGTAATTTTTGTAAGTTCGAGGG-TAAAAATGTAA
1 GTAATTT-TGGAAGTGTCG-GGGTCAAAAATGGAATTTTTGGAAGTTC-AGGGTTAAAAATGTAA
10623563 TTTTTAAAAGTTTTAGGG
63 TTTTTAAAAGTTTTAGGG
10623581 TTAAAAATAT
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
87 49 0.69
88 22 0.31
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.37
Consensus pattern (88 bp):
GTAATTTTGGAAGTGTCGGGGTCAAAAATGGAATTTTTGGAAGTTCAGGGTTAAAAATGTAATTT
TTAAAAGTTTTAGGGGCAAAATT
Found at i:10623597 original size:29 final size:30
Alignment explanation
Indices: 10623519--10623626 Score: 87
Period size: 29 Copynumber: 3.6 Consensus size: 30
10623509 TGGAAGTTCG
* ** **
10623519 AGGGTAAAAATGTAATTTTT-GTAAGTTCG
1 AGGGTAAAAATATAATTTTTAAAAAGTTTT
*
10623548 AGGGTAAAAATGTAATTTTT-AAAAGTTTT
1 AGGGTAAAAATATAATTTTTAAAAAGTTTT
*
10623577 AGGGTTAAAAATATAA-TTTTAGAAAAGTTTG
1 AGGG-TAAAAATATAATTTTTA-AAAAGTTTT
* * *
10623608 GGGGTCAAAATAAAATTTT
1 AGGGTAAAAATATAATTTT
10623627 GGACAGTTTA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
29 33 0.50
30 19 0.29
31 14 0.21
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.37
Consensus pattern (30 bp):
AGGGTAAAAATATAATTTTTAAAAAGTTTT
Found at i:10623618 original size:30 final size:30
Alignment explanation
Indices: 10623549--10623627 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
10623539 GTAAGTTCGA
* *
10623549 GGGTAAAAATGTAATTTTTAAAAGTTTTAG
1 GGGTAAAAATATAATTTTGAAAAGTTTTAG
* *
10623579 GGTTAAAAATATAATTTTAGAAAAG-TTTGG
1 GGGTAAAAATATAATTTT-GAAAAGTTTTAG
* *
10623609 GGGTCAAAATAAAATTTTG
1 GGGTAAAAATATAATTTTG
10623628 GACAGTTTAG
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 1 0.02
30 35 0.85
31 5 0.12
ACGTcount: A:0.42, C:0.01, G:0.20, T:0.37
Consensus pattern (30 bp):
GGGTAAAAATATAATTTTGAAAAGTTTTAG
Found at i:10625702 original size:29 final size:29
Alignment explanation
Indices: 10625643--10625711 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
10625633 TGGACATTTT
* *
10625643 AAATTTATAATAATATTAAATTAAAATTA
1 AAATTTAAAATAATATTAAATTAAAAGTA
* *
10625672 AAATTTAAAATAA-ATTTAATTTCAAAGTA
1 AAATTTAAAATAATA-TTAAATTAAAAGTA
*
10625701 AATTTTAAAAT
1 AAATTTAAAAT
10625712 GGTTTGGGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 1 0.03
29 33 0.97
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (29 bp):
AAATTTAAAATAATATTAAATTAAAAGTA
Found at i:10626407 original size:92 final size:91
Alignment explanation
Indices: 10626306--10626975 Score: 1008
Period size: 92 Copynumber: 7.3 Consensus size: 91
10626296 ATTTGGTATC
* *
10626306 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGTTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10626371 ACTTCAAGAGGATAGGAATTTG-GTATC
66 ACTTCAAGAGGATAGGAA-TTGAGT-TT
*
10626398 GAAGTTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
10626463 ACTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* *
10626490 GAAACTTCATCTTGCTCTTACTGCAACTTCAGAGAGATAAAGACTTGCTATCC-A--TTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
10626552 ACTTCAAGAGGATTGGAATTAATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * * *
10626579 GAAACTTCATCTTACTCTTACTACAACTTTAGAGAGATAAAAACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
* *
10626644 ACTTCAAGAGGATGGGAACTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
10626671 GAACCTTCATCTTGTTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10626736 ATTTCAAGAGGATAGGAATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
* * *
10626763 AAAGCTTCATCTTACTCTTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
10626828 ACTTCAAGAGGATAAGG-ATTGATGTTT
66 ACTTCAAGAGGAT-AGGAATTGA-GTTT
*
10626855 GAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
*
10626920 ACTTCAAGAGGATAGGGATTGATGTTT
66 ACTTCAAGAGGATAGGAATTGA-GTTT
*
10626947 GAAGCTTTATCTTGCTCTTACTACAACTT
1 GAAGCTTCATCTTGCTCTTACTACAACTT
10626976 TAGACCTTTC
Statistics
Matches: 535, Mismatches: 36, Indels: 14
0.91 0.06 0.02
Matches are distributed among these distances:
89 82 0.15
90 1 0.00
91 7 0.01
92 440 0.82
93 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (91 bp):
GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACA
ACTTCAAGAGGATAGGAATTGAGTTT
Found at i:10626824 original size:40 final size:39
Alignment explanation
Indices: 10626780--10626929 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 39
10626770 CATCTTACTC
*
10626780 TTACTACATCTTCAGAGAGATAAAGACTTGCTATCCAACT
1 TTACTACAACTTCA-AGAGATAAAGACTTGCTATCCAACT
* **
10626820 TTACTACAACTTCAAGAGGATAAGGATTGATGTTTGAAGCTTCATCTTACT
1 TTACTACAACTTCAAGA-GATAA--A--GA--CTT---GC-T-ATCCAACT
10626871 CTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACT
1 -TTACTACAACTTCA-AGAGATAAAGACTTGCTATCCAACT
10626912 TTACTACAACTTCAAGAG
1 TTACTACAACTTCAAGAG
10626930 GATAGGGATT
Statistics
Matches: 89, Mismatches: 7, Indels: 29
0.71 0.06 0.23
Matches are distributed among these distances:
39 7 0.08
40 32 0.36
41 6 0.07
42 2 0.02
43 2 0.02
44 2 0.02
46 4 0.04
48 2 0.02
49 2 0.02
50 2 0.02
51 6 0.07
52 19 0.21
53 3 0.03
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.31
Consensus pattern (39 bp):
TTACTACAACTTCAAGAGATAAAGACTTGCTATCCAACT
Found at i:10627056 original size:50 final size:51
Alignment explanation
Indices: 10626975--10627142 Score: 137
Period size: 50 Copynumber: 3.3 Consensus size: 51
10626965 TACTACAACT
*
10626975 TTAGACCTTTCCCTTCGTGTCTTCTGAGGTACACGATCCGCCGTTGC-GAC
1 TTAGACCTTTCCCTTCGTATCTTCTGAGGTACACGATCCGCCGTTGCGGAC
* * ** * * *
10627025 TTAGACCTTTCCCTTTTGTATCTT-TGCGGTACTGGATTCTCCGTTGCGGTC
1 TTAGACCTTTCCC-TTCGTATCTTCTGAGGTACACGATCCGCCGTTGCGGAC
* * * * * * * *
10627076 TTAGATCTTTCCCGTCGTGT-TTTTGTGGTACTA-GATCCGTCGTTGTGGTC
1 TTAGACCTTTCCCTTCGTATCTTCTGAGGTAC-ACGATCCGCCGTTGCGGAC
*
10627126 TTAGATCTTTCCCTTCG
1 TTAGACCTTTCCCTTCG
10627143 AATTTCATGT
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
49 2 0.02
50 71 0.75
51 22 0.23
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.40
Consensus pattern (51 bp):
TTAGACCTTTCCCTTCGTATCTTCTGAGGTACACGATCCGCCGTTGCGGAC
Found at i:10629292 original size:27 final size:28
Alignment explanation
Indices: 10629262--10629320 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
10629252 AAAATGAGAC
*
10629262 TTTTAGA-TACCCGAGGG-AAAATGGTAA
1 TTTTAGACT-CCCAAGGGCAAAATGGTAA
* *
10629289 TTTTGGACTCTCAAGGGCAAAATGGTAA
1 TTTTAGACTCCCAAGGGCAAAATGGTAA
10629317 TTTT
1 TTTT
10629321 GGAAAATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (28 bp):
TTTTAGACTCCCAAGGGCAAAATGGTAA
Found at i:10629455 original size:29 final size:28
Alignment explanation
Indices: 10629421--10629580 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 28
10629411 ACATCTGGGA
*
10629421 GTAAAAAGGTAA-TTTTGGAAGTGTCGGG
1 GTAAAAATGTAATTTTTGGAAGT-TCGGG
* *
10629449 GTCAAAAATGGAATTTTTGGAAGTTCAGG
1 GT-AAAAATGTAATTTTTGGAAGTTCGGG
* * *
10629478 GTTAAAATGTAATTTTTGGTAGTTTAGGG
1 GTAAAAATGTAATTTTTGGAAG-TTCGGG
* * *
10629507 GCAAAATTGTAATTTCTGGAAGTTCGAGG
1 GTAAAAATGTAATTTTTGGAAGTTCG-GG
*
10629536 GTAAAAATGTAATTTTTGTAAGTTCGAGG
1 GTAAAAATGTAATTTTTGGAAGTTCG-GG
10629565 GTAAAAATGTAATTTT
1 GTAAAAATGTAATTTT
10629581 AAAAGTTTTT
Statistics
Matches: 110, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
28 22 0.20
29 78 0.71
30 10 0.09
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (28 bp):
GTAAAAATGTAATTTTTGGAAGTTCGGG
Done.