Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 34 of 182
Found at i:13058642 original size:59 final size:59
Alignment explanation
Indices: 13058403--13058605 Score: 295
Period size: 59 Copynumber: 3.5 Consensus size: 59
13058393 TTTATTTATT
* *
13058403 AAAAAATAAAAAAATAATATTATATTAGTGAAGGATTATCAAATGGCAGTATTACAAGG
1 AAAAAATAAAAAAATAATATTATATTAGTGAAGGATTATCAAATGACAGTACTACAAGG
*
13058462 AAAAAATAAAAAAATAAAATTATATTAGTGGAA-GATTATCAAATGACAGTACTACAAGG
1 AAAAAATAAAAAAATAATATTATATTAGT-GAAGGATTATCAAATGACAGTACTACAAGG
* * * * *
13058521 AAAGAAAT-AAAAAA-AATATTGTATTAGTGAAGGATTATCAAATGACAGCACCATAGGG
1 AAA-AAATAAAAAAATAATATTATATTAGTGAAGGATTATCAAATGACAGTACTACAAGG
13058579 AAAAAATAAAAAAATAATATTATATTA
1 AAAAAATAAAAAAATAATATTATATTA
13058606 ATAGAGGGTT
Statistics
Matches: 129, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
57 7 0.05
58 43 0.33
59 72 0.56
60 7 0.05
ACGTcount: A:0.55, C:0.06, G:0.14, T:0.25
Consensus pattern (59 bp):
AAAAAATAAAAAAATAATATTATATTAGTGAAGGATTATCAAATGACAGTACTACAAGG
Found at i:13058661 original size:21 final size:21
Alignment explanation
Indices: 13058637--13058713 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 21
13058627 ATATTATAGG
13058637 GAAAAATTATATAAAATACAC
1 GAAAAATTATATAAAATACAC
****
13058658 GAAAAA--ATACCTGA-ACAC
1 GAAAAATTATATAAAATACAC
13058676 TGAAAAATTATATAAAATACAC
1 -GAAAAATTATATAAAATACAC
* *
13058698 GTAAAATTAAATAAAA
1 GAAAAATTATATAAAA
13058714 AATCAATTAA
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
18 4 0.10
19 10 0.24
21 24 0.57
22 4 0.10
ACGTcount: A:0.61, C:0.10, G:0.06, T:0.22
Consensus pattern (21 bp):
GAAAAATTATATAAAATACAC
Found at i:13058764 original size:54 final size:54
Alignment explanation
Indices: 13058703--13059028 Score: 351
Period size: 54 Copynumber: 6.5 Consensus size: 54
13058693 TACACGTAAA
* *
13058703 ATTAAATAAAAAATCAATTAAAAATAACTTAAAAATTAAATAACAAACAAAAAC
1 ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAATAACAAATAAAAAC
* *
13058757 ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAATAAGAAATAAAAAT
1 ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAATAACAAATAAAAAC
* * * *
13058811 ATTAAATAATAAATCAATT--AAA-AA-TT--AAATTTACT--CAACTAAAAAC
1 ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAATAACAAATAAAAAC
13058857 ATTAAATAACAAATCAATT--AAA-AA-TT--AAA-T--A-AA-AAATAAAAAC
1 ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAATAACAAATAAAAAC
*
13058900 ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAATAACAAATAAAAAT
1 ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAATAACAAATAAAAAC
* *
13058954 ATTAAATAACAAATCAATT--AAA-AA-TT--AAATTTACTCAACTAAATAAAAAC
1 ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAAT-AAC-AAATAAAAAC
*
13059004 ATTAAATAACAAATCACTTAAAAAT
1 ATTAAATAACAAATCAATTAAAAAT
13059029 TAAATTGAAC
Statistics
Matches: 236, Mismatches: 18, Indels: 37
0.81 0.06 0.13
Matches are distributed among these distances:
43 28 0.12
45 4 0.02
46 38 0.16
47 2 0.01
48 14 0.06
49 6 0.03
50 32 0.14
51 4 0.02
52 10 0.04
53 2 0.01
54 96 0.41
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (54 bp):
ATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAAATAACAAATAAAAAC
Found at i:13058836 original size:43 final size:43
Alignment explanation
Indices: 13058785--13058924 Score: 199
Period size: 43 Copynumber: 3.2 Consensus size: 43
13058775 TAAAAATAAC
* * *
13058785 TTAAAAATTAAATAAGAAATAAAAATATTAAATAATAAATCAA
1 TTAAAAATTAAATAAAAAATAAAAACATTAAATAACAAATCAA
** *
13058828 TTAAAAATTAAATTTACTCAACTAAAAACATTAAATAACAAATCAA
1 TTAAAAATTAAA--TA-AAAAATAAAAACATTAAATAACAAATCAA
13058874 TTAAAAATTAAATAAAAAATAAAAACATTAAATAACAAATCAA
1 TTAAAAATTAAATAAAAAATAAAAACATTAAATAACAAATCAA
13058917 TTAAAAAT
1 TTAAAAAT
13058925 AACTTAAAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
43 46 0.53
44 2 0.02
45 2 0.02
46 36 0.42
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (43 bp):
TTAAAAATTAAATAAAAAATAAAAACATTAAATAACAAATCAA
Found at i:13058902 original size:143 final size:144
Alignment explanation
Indices: 13058731--13059064 Score: 528
Period size: 143 Copynumber: 2.3 Consensus size: 144
13058721 TAAAAATAAC
*
13058731 TTAAAAATTAAATAACAAACAAAAACATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAA
1 TTAAAAATTAAATAAAAAACAAAAACATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAA
* *
13058796 ATAAGAAATAAAAATATTAAATAATAAATCAATTAAAAATTAAATTTACTCAAC-TAAAAACATT
66 ATAACAAATAAAAATATTAAATAACAAATCAATTAAAAATTAAATTTACTCAACATAAAAACATT
13058860 AAATAACAAATCAA
131 AAATAACAAATCAA
*
13058874 TTAAAAATTAAATAAAAAATAAAAACATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAA
1 TTAAAAATTAAATAAAAAACAAAAACATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAA
13058939 ATAACAAATAAAAATATTAAATAACAAATCAATTAAAAATTAAATTTACTCAACTAAATAAAAAC
66 ATAACAAATAAAAATATTAAATAACAAATCAATTAAAAATTAAATTTACTCAAC---ATAAAAAC
*
13059004 ATTAAATAACAAATCAC
128 ATTAAATAACAAATCAA
*
13059021 TTAAAAATTAAATTGAACAAAACAAATAAC-TTAAAATAATAAAT
1 TTAAAAATTAAA-T-AA-AAAACAAA-AACATT-AAATAACAAAT
13059065 ACTAAACAAA
Statistics
Matches: 175, Mismatches: 7, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
143 115 0.66
147 35 0.20
148 1 0.01
149 2 0.01
150 9 0.05
151 13 0.07
ACGTcount: A:0.64, C:0.09, G:0.01, T:0.26
Consensus pattern (144 bp):
TTAAAAATTAAATAAAAAACAAAAACATTAAATAACAAATCAATTAAAAATAACTTAAAAATTAA
ATAACAAATAAAAATATTAAATAACAAATCAATTAAAAATTAAATTTACTCAACATAAAAACATT
AAATAACAAATCAA
Found at i:13058933 original size:43 final size:43
Alignment explanation
Indices: 13058785--13058944 Score: 187
Period size: 43 Copynumber: 3.6 Consensus size: 43
13058775 TAAAAATAAC
* * * *
13058785 TTAAAAATTAAATAAGAAATAAAAATATTAAATAATAAATCAA
1 TTAAAAATTAATTAAAAAATAAAAACATTAAATAACAAATCAA
** *
13058828 TTAAAAATTAAATTTACTCAACTAAAAACATTAAATAACAAATCAA
1 TTAAAAATT-AA-TTA-AAAAATAAAAACATTAAATAACAAATCAA
*
13058874 TTAAAAATTAAATAAAAAATAAAAACATTAAATAACAAATCAA
1 TTAAAAATTAATTAAAAAATAAAAACATTAAATAACAAATCAA
*
13058917 TTAAAAA-TAACTTAAAAATTAAATAACA
1 TTAAAAATTAA-TTAAAAAATAAA-AACA
13058945 AATAAAAATA
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
42 3 0.03
43 52 0.52
44 8 0.08
45 4 0.04
46 33 0.33
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (43 bp):
TTAAAAATTAATTAAAAAATAAAAACATTAAATAACAAATCAA
Found at i:13059008 original size:50 final size:48
Alignment explanation
Indices: 13058878--13059049 Score: 200
Period size: 50 Copynumber: 3.4 Consensus size: 48
13058868 AATCAATTAA
*
13058878 AAATTAAATAAAAAATAAAAACATTAAATAACAAATCAATTAAAAATAACTT
1 AAATTAAATAACAAATAAAAACATTAAATAACAAATCAATT--AAA-AA-TT
*
13058930 AAAAATTAAATAACAAATAAAAATATTAAATAACAAATCAATTAAAAATT
1 --AAATTAAATAACAAATAAAAACATTAAATAACAAATCAATTAAAAATT
* * *
13058980 AAATTTACTCAACTAAATAAAAACATTAAATAACAAATCACTTAAAAATT
1 AAATTAAAT-AAC-AAATAAAAACATTAAATAACAAATCAATTAAAAATT
*
13059030 AAATTGAACAAAACAAATAA
1 AAATT-AA-ATAACAAATAA
13059050 CTTAAAATAA
Statistics
Matches: 105, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
48 7 0.07
49 3 0.03
50 47 0.45
51 6 0.06
52 3 0.03
54 39 0.37
ACGTcount: A:0.65, C:0.09, G:0.01, T:0.25
Consensus pattern (48 bp):
AAATTAAATAACAAATAAAAACATTAAATAACAAATCAATTAAAAATT
Found at i:13059041 original size:25 final size:23
Alignment explanation
Indices: 13058921--13059033 Score: 97
Period size: 23 Copynumber: 4.9 Consensus size: 23
13058911 AATCAATTAA
*
13058921 AAATAACTTAAAAATTAAATAAC
1 AAATAAATTAAAAATTAAATAAC
*
13058944 AAAT-AA--AAATATTAAATAAC
1 AAATAAATTAAAAATTAAATAAC
* *
13058964 AAATCAATTAAAAATTAAATTTACTC
1 AAATAAATTAAAAATTAAA--TA-AC
* *
13058990 AACTAAATAAAAACATTAAATAAC
1 AAATAAATTAAAA-ATTAAATAAC
* *
13059014 AAATCACTTAAAAATTAAAT
1 AAATAAATTAAAAATTAAAT
13059034 TGAACAAAAC
Statistics
Matches: 71, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
20 17 0.24
21 2 0.03
22 1 0.01
23 20 0.28
24 10 0.14
25 4 0.06
26 11 0.15
27 6 0.08
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (23 bp):
AAATAAATTAAAAATTAAATAAC
Found at i:13059324 original size:21 final size:21
Alignment explanation
Indices: 13059298--13059364 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
13059288 CTTCGTTATT
13059298 TTTTTCGTGTATTTTATATAA
1 TTTTTCGTGTATTTTATATAA
** * * *
13059319 TTTTTC-AATA-TTCAAATAC
1 TTTTTCGTGTATTTTATATAA
13059338 TTTTTCGTGTATTTTATATAA
1 TTTTTCGTGTATTTTATATAA
*
13059359 ATTTTC
1 TTTTTC
13059365 CCTATAATAC
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
19 12 0.36
20 4 0.12
21 17 0.52
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (21 bp):
TTTTTCGTGTATTTTATATAA
Found at i:13060558 original size:13 final size:14
Alignment explanation
Indices: 13060540--13060574 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
13060530 CCTGGTAAGT
*
13060540 TTTTTTTTC-TTTA
1 TTTTTTTACATTTA
13060553 TTTTTTTACATTTA
1 TTTTTTTACATTTA
13060567 TTTTTTTA
1 TTTTTTTA
13060575 ATTGAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTTTACATTTA
Found at i:13068483 original size:14 final size:14
Alignment explanation
Indices: 13068466--13068493 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13068456 TTATGTTTTG
13068466 AAGTTAATGTTAAA
1 AAGTTAATGTTAAA
13068480 AAGTTAATGTTAAA
1 AAGTTAATGTTAAA
13068494 GGGCTCCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (14 bp):
AAGTTAATGTTAAA
Found at i:13071523 original size:5 final size:5
Alignment explanation
Indices: 13071513--13071616 Score: 68
Period size: 5 Copynumber: 21.0 Consensus size: 5
13071503 TCAATGTAAT
* * * * *
13071513 ATAAA ATAAA AGAAA ATAAT ATAAA GTAAA CTAAA ATAAA ATAAT ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
* ** * * * * *
13071563 GTAAA GCAAA ATAAT ATAAA ACAAA GTAAA GA-AAA A-AAA ACAAT ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA -ATAAA ATAAA ATAAA ATAAA
13071612 ATAAA
1 ATAAA
13071617 GCAAAGTAAT
Statistics
Matches: 75, Mismatches: 22, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
4 5 0.07
5 70 0.93
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.18
Consensus pattern (5 bp):
ATAAA
Found at i:13071542 original size:25 final size:25
Alignment explanation
Indices: 13071514--13071616 Score: 102
Period size: 25 Copynumber: 4.2 Consensus size: 25
13071504 CAATGTAATA
*
13071514 TAAAATAAAAGAAAATAATATAAAG
1 TAAAATAAAATAAAATAATATAAAG
*
13071539 TAAACTAAAATAAAATAATATAAAG
1 TAAAATAAAATAAAATAATATAAAG
** * * *
13071564 TAAAGCAAAATAATATAAAACAAAG
1 TAAAATAAAATAAAATAATATAAAG
* *
13071589 TAAAGA-AAAA-AAAACAATATAAAA
1 TAAA-ATAAAATAAAATAATATAAAG
13071613 TAAA
1 TAAA
13071617 GCAAAGTAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
24 13 0.20
25 51 0.80
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.18
Consensus pattern (25 bp):
TAAAATAAAATAAAATAATATAAAG
Found at i:13071588 original size:20 final size:20
Alignment explanation
Indices: 13071550--13071693 Score: 70
Period size: 20 Copynumber: 7.5 Consensus size: 20
13071540 AAACTAAAAT
**
13071550 AAAATAATATAAAGTAAAGC
1 AAAATAATATAAAACAAAGC
13071570 AAAATAATATAAAACAAAG-
1 AAAATAATATAAAACAAAGC
* *
13071589 TAAA-GA-A-AAAA-AAA-C
1 AAAATAATATAAAACAAAGC
* * * *
13071604 AATATAAAATAAAGCAAAGT
1 AAAATAATATAAAACAAAGC
* * *
13071624 AATATAA-AGCAAAACAAAAC
1 AAAATAATA-TAAAACAAAGC
* *
13071644 AAAGTAATATAAAACAAAGT
1 AAAATAATATAAAACAAAGC
** *
13071664 AAAGCAATATAAAGCAAAG-
1 AAAATAATATAAAACAAAGC
13071683 AAAAGTAATAT
1 AAAA-TAATAT
13071694 TGACATATAT
Statistics
Matches: 93, Mismatches: 22, Indels: 18
0.70 0.17 0.14
Matches are distributed among these distances:
15 5 0.05
16 5 0.05
17 2 0.02
18 4 0.04
19 10 0.11
20 66 0.71
21 1 0.01
ACGTcount: A:0.68, C:0.07, G:0.09, T:0.16
Consensus pattern (20 bp):
AAAATAATATAAAACAAAGC
Found at i:13071630 original size:15 final size:15
Alignment explanation
Indices: 13071612--13071665 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
13071602 ACAATATAAA
13071612 ATAAAGCAAAGTAAT
1 ATAAAGCAAAGTAAT
*
13071627 ATAAAGC-AA--AAC
1 ATAAAGCAAAGTAAT
13071639 A-AAA-CAAAGTAAT
1 ATAAAGCAAAGTAAT
*
13071652 ATAAAACAAAGTAA
1 ATAAAGCAAAGTAA
13071666 AGCAATATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
10 1 0.03
11 5 0.16
12 3 0.09
13 3 0.09
14 5 0.16
15 15 0.47
ACGTcount: A:0.67, C:0.09, G:0.09, T:0.15
Consensus pattern (15 bp):
ATAAAGCAAAGTAAT
Found at i:13071646 original size:25 final size:25
Alignment explanation
Indices: 13071609--13071661 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
13071599 AAAACAATAT
* * *
13071609 AAAATAAAGCAAAGTAATATAAAGC
1 AAAACAAAACAAAGTAATATAAAAC
13071634 AAAACAAAACAAAGTAATATAAAAC
1 AAAACAAAACAAAGTAATATAAAAC
13071659 AAA
1 AAA
13071662 GTAAAGCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.70, C:0.09, G:0.08, T:0.13
Consensus pattern (25 bp):
AAAACAAAACAAAGTAATATAAAAC
Found at i:13081983 original size:15 final size:15
Alignment explanation
Indices: 13081963--13082461 Score: 150
Period size: 15 Copynumber: 32.5 Consensus size: 15
13081953 GTTCAATTTT
13081963 TTTGCTTTATATTGC
1 TTTGCTTTATATTGC
13081978 TTTGCTTGCTTTATATTAG-
1 --T--TTGCTTTATATT-GC
*
13081997 TTTGCTTTATATTGT
1 TTTGCTTTATATTGC
* **
13082012 TTTGCTTTGT-TTTA
1 TTTGCTTTATATTGC
* *
13082026 TATTACTTTGCT-TTGC
1 T-TTGCTTT-ATATTGC
* *
13082042 TTTTCTTTGTATTGC
1 TTTGCTTTATATTGC
13082057 TTTGC----T-TTGC
1 TTTGCTTTATATTGC
*
13082067 TTTGTTTTATATTGC
1 TTTGCTTTATATTGC
13082082 TTTGC----T-TTGC
1 TTTGCTTTATATTGC
*
13082092 TTTGCTTTACATTGC
1 TTTGCTTTATATTGC
13082107 TTTG-TATTACT-TTGC
1 TTTGCT-TTA-TATTGC
13082122 TTTGCTTTATATAGCTTTGC
1 TTTGC-TT-TATA---TTGC
13082142 TTTGCTTTATATTGC
1 TTTGCTTTATATTGC
*
13082157 TTTGCTTTATATTTC
1 TTTGCTTTATATTGC
*
13082172 TTTGCTTTCCT-TTGC
1 TTTGCTTT-ATATTGC
** * *
13082187 TTTATATTTCT-TTAC
1 TTT-GCTTTATATTGC
*
13082202 TTTGCTTTACATTGC
1 TTTGCTTTATATTGC
13082217 TTTG-TATTAT-TTGC
1 TTTGCT-TTATATTGC
* *
13082231 TTTGCTTTGCT-TTGT
1 TTTGCTTT-ATATTGC
* *
13082246 TTTGTTTTATATAGC
1 TTTGCTTTATATTGC
* **
13082261 TTTGCTTTGT-TTTA
1 TTTGCTTTATATTGC
* *
13082275 TATTGCTTTGTATTAC
1 T-TTGCTTTATATTGC
13082291 TTTGCTTTGTATAGCTTTGC
1 TTTGC-TT-TATA---TTGC
*
13082311 TTTGCTTTATATTGA
1 TTTGCTTTATATTGC
*
13082326 TTTGTTTTATTTTATATTGC
1 TTTG-----CTTTATATTGC
* *
13082346 TTTGTTTTATATT-A
1 TTTGCTTTATATTGC
* *
13082360 TTTCGCTTTGTTTTGC
1 TTT-GCTTTATATTGC
* *
13082376 TTTGCTTGTATTGCTTTGT
1 TTTGCTT-TA-T--ATTGC
13082395 TTTGCTTTATATTGC
1 TTTGCTTTATATTGC
*
13082410 TTTGCTTTGCT-TTGC
1 TTTGCTTT-ATATTGC
* *
13082425 -TTG-TATTGCT-TTGT
1 TTTGCT-TT-ATATTGC
13082439 TTTGCTTTATATTGC
1 TTTGCTTTATATTGC
13082454 TTTGCTTT
1 TTTGCTTT
13082462 GTTTTATATA
Statistics
Matches: 369, Mismatches: 57, Indels: 114
0.68 0.11 0.21
Matches are distributed among these distances:
10 17 0.05
11 2 0.01
13 1 0.00
14 39 0.11
15 211 0.57
16 21 0.06
17 10 0.03
18 10 0.03
19 27 0.07
20 31 0.08
ACGTcount: A:0.11, C:0.13, G:0.14, T:0.62
Consensus pattern (15 bp):
TTTGCTTTATATTGC
Found at i:13082025 original size:20 final size:20
Alignment explanation
Indices: 13081963--13082470 Score: 246
Period size: 20 Copynumber: 24.6 Consensus size: 20
13081953 GTTCAATTTT
*
13081963 TTTGCTTTATATTGCTTTGC
1 TTTGTTTTATATTGCTTTGC
*
13081983 -TTGCTTTATATTAG-TTTGC
1 TTTGTTTTATATT-GCTTTGC
* * * * *
13082002 TTTATATTGTTTTGCTTTGT
1 TTTGTTTTATATTGCTTTGC
* *
13082022 TTTATATTACT-TTGCTTTGC
1 TTTGTTTTA-TATTGCTTTGC
* *
13082042 TTTTCTTTGTATTGCTTTGCTTTGC
1 -TTTGTTT-TA-T--ATTGCTTTGC
13082067 TTTGTTTTATATTGCTTTGC
1 TTTGTTTTATATTGCTTTGC
* *
13082087 TTTG----CT-TTGCTTTAC
1 TTTGTTTTATATTGCTTTGC
* * * *
13082102 ATTGCTTTGTATTACTTTGC
1 TTTGTTTTATATTGCTTTGC
* *
13082122 TTTGCTTTATATAGCTTTGC
1 TTTGTTTTATATTGCTTTGC
*
13082142 TTTGCTTTATATTGCTTTGC
1 TTTGTTTTATATTGCTTTGC
* * *
13082162 TTTATATTTCT-TTGCTTTCC
1 TTTGT-TTTATATTGCTTTGC
* * *
13082182 TTTGCTTTATATTTCTTTAC
1 TTTGTTTTATATTGCTTTGC
* *
13082202 TTTGCTTTACATTGCTTTG-
1 TTTGTTTTATATTGCTTTGC
* * * *
13082221 TATTATTTGCTTTGCTTTGCTTTGT
1 T-TTGTTT--TAT--ATTGCTTTGC
*
13082246 TTTGTTTTATATAGCTTTGC
1 TTTGTTTTATATTGCTTTGC
13082266 TTTGTTTTATATTGCTTTGTATTAC
1 TTTGTTTTATATTGCTTTG-----C
* * *
13082291 TTTGCTTTGTATAGCTTTGC
1 TTTGTTTTATATTGCTTTGC
* * *
13082311 TTTGCTTTATATTGATTTGT
1 TTTGTTTTATATTGCTTTGC
* *
13082331 TTTATTTTATATTGCTTTGT
1 TTTGTTTTATATTGCTTTGC
* * *
13082351 TTTATATTAT-TTCGCTTTGT
1 TTTGTTTTATATT-GCTTTGC
* *
13082371 TTTGCTTTGCTTGTATTGCTTTGT
1 TTTG--TT--TTATATTGCTTTGC
*
13082395 TTTGCTTTATATTGCTTTGC
1 TTTGTTTTATATTGCTTTGC
* *
13082415 TTTGCTTTGCTTGTATTGCTTTGT
1 TTTG--TT--TTATATTGCTTTGC
*
13082439 TTTGCTTTATATTGCTTTGC
1 TTTGTTTTATATTGCTTTGC
13082459 TTTGTTTTATAT
1 TTTGTTTTATAT
13082471 ACATTTAAAC
Statistics
Matches: 380, Mismatches: 71, Indels: 74
0.72 0.14 0.14
Matches are distributed among these distances:
15 11 0.03
16 1 0.00
19 26 0.07
20 241 0.63
21 10 0.03
22 11 0.03
23 2 0.01
24 49 0.13
25 29 0.08
ACGTcount: A:0.11, C:0.12, G:0.14, T:0.62
Consensus pattern (20 bp):
TTTGTTTTATATTGCTTTGC
Found at i:13082036 original size:35 final size:35
Alignment explanation
Indices: 13081963--13082470 Score: 193
Period size: 35 Copynumber: 14.9 Consensus size: 35
13081953 GTTCAATTTT
*
13081963 TTTGCTTTATATTGCTTTGC-TTGCTTTATATTAG
1 TTTGCTTTATATTGCTTTGCTTTGCTTTATATTAC
* *
13081997 TTTGCTTTATATTGTTTTGCTTTGTTTTATATTAC
1 TTTGCTTTATATTGCTTTGCTTTGCTTTATATTAC
* * * *
13082032 TTTGCTTTGCT-TTTCTTTG-TATTGCTTTGCT-TTGC
1 TTTGCTTT-ATATTGCTTTGCT-TTGCTTT-ATATTAC
* *
13082067 TTTGTTTTATATTGCTTTGCTTTGCTTTGCT-TTAC
1 TTTGCTTTATATTGCTTTGCTTTGCTTT-ATATTAC
* * *
13082102 ATTGCTTTGTATTACTTTGCTTTGCTTTATA-TAGC
1 TTTGCTTTATATTGCTTTGCTTTGCTTTATATTA-C
* * *
13082137 TTTGCTTTGCT-TT-ATATTGCTTTGCTTTATATTTC
1 TTTGCTTT-ATATTGCT-TTGCTTTGCTTTATATTAC
* * * *
13082172 TTTGCTTTCCT-TTGCTTT-ATATTTCTTTACTTTGCTTTAC
1 TTTGCTTT-ATATTGCTTTGCT-TTGCTTTA---T--ATTAC
* * * * **
13082212 ATTGCTTTGTATT-ATTTGCTTTGCTTTGCT-TTGT
1 TTTGCTTTATATTGCTTTGCTTTGCTTT-ATATTAC
* *
13082246 TTTGTTTTATATAGCTTTGCTTTG-TTT-TA-TA-
1 TTTGCTTTATATTGCTTTGCTTTGCTTTATATTAC
* * * *
13082277 -TTGCTTTGTATTACTTTGCTTTG-TATAGCT-TTGC
1 TTTGCTTTATATTGCTTTGCTTTGCTTTA--TATTAC
* * ** *
13082311 TTTGCTTTATATTGATTTGTTTTATTTTATATTGC
1 TTTGCTTTATATTGCTTTGCTTTGCTTTATATTAC
* * *
13082346 TTTGTTTTATATT-ATTTCGCTTTG---T-T-TTGC
1 TTTGCTTTATATTGCTTT-GCTTTGCTTTATATTAC
* * *
13082376 TTTGC-TTGTATTGCTTTGTTTTGCTTTATATTGC
1 TTTGCTTTATATTGCTTTGCTTTGCTTTATATTAC
* *
13082410 TTTGCTTTGCT-TTGC-TTG-TATTGC-TT-T-GT--
1 TTTGCTTT-ATATTGCTTTGCT-TTGCTTTATATTAC
*
13082439 TTTGCTTTATATTGCTTTGCTTTGTTTTATAT
1 TTTGCTTTATATTGCTTTGCTTTGCTTTATAT
13082471 ACATTTAAAC
Statistics
Matches: 361, Mismatches: 66, Indels: 95
0.69 0.13 0.18
Matches are distributed among these distances:
28 1 0.00
29 23 0.06
30 38 0.11
31 5 0.01
32 6 0.02
33 6 0.02
34 61 0.17
35 186 0.52
36 10 0.03
37 1 0.00
38 1 0.00
39 10 0.03
40 13 0.04
ACGTcount: A:0.11, C:0.12, G:0.14, T:0.62
Consensus pattern (35 bp):
TTTGCTTTATATTGCTTTGCTTTGCTTTATATTAC
Found at i:13082039 original size:5 final size:5
Alignment explanation
Indices: 13082031--13082462 Score: 163
Period size: 5 Copynumber: 87.0 Consensus size: 5
13082021 TTTTATATTA
* * *
13082031 CTTTG CTTTG CTTTT CTTTG -TATTG CTTTG CTTTG CTTTG -TTTT ATATTG
1 CTTTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CTTTG CTTTG CT-TTG
* * *
13082081 CTTTG CTTTG CTTTG CTTTA CATTG CTTTG -TATTA CTTTG CTTTG CTTT-
1 CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CTTTG
* * * * *
13082130 ATATAG CTTTG CTTTG CTTT- ATATTG CTTTG CTTT- ATATTT CTTTG
1 CT-TTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CT-TTG CTTTG
* * * * * *
13082176 CTTTC CTTTG CTTT- ATATTT CTTTA CTTTG CTTTA CATTG CTTTG -TATT-
1 CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CTTTG CTTTG CTTTG CT-TTG
* * * * * *
13082225 ATTTG CTTTG CTTTG CTTTG TTTTG -TTTT ATATAG CTTTG CTTTG -TTTT
1 CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CTTTG
* * *
13082274 ATATTG CTTTG -TATTA CTTTG CTTTG -TATAG CTTTG CTTTG CTTT-
1 CT-TTG CTTTG CT-TTG CTTTG CTTTG CT-TTG CTTTG CTTTG CTTTG
* * * * * * * * *
13082319 ATATTG ATTTG -TTTT ATTTT ATATTG CTTTG -TTTT ATATT- ATTTCG
1 CT-TTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CT-TTG CTTT-G
* * *
13082365 CTTTG TTTTG CTTTG C-TTG -TATTG CTTTG TTTTG CTTT- ATATTG CTTTG
1 CTTTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CTTTG CT-TTG CTTTG
* *
13082414 CTTTG CTTTG C-TTG -TATTG CTTTG TTTTG CTTT- ATATTG CTTTG CTTTG
1 CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG
13082463 TTTTATATAC
Statistics
Matches: 324, Mismatches: 60, Indels: 86
0.69 0.13 0.18
Matches are distributed among these distances:
4 37 0.11
5 257 0.79
6 30 0.09
ACGTcount: A:0.10, C:0.13, G:0.15, T:0.62
Consensus pattern (5 bp):
CTTTG
Found at i:13082040 original size:25 final size:25
Alignment explanation
Indices: 13082012--13082446 Score: 213
Period size: 25 Copynumber: 17.3 Consensus size: 25
13082002 TTTATATTGT
*
13082012 TTTGCTTTGTTTTATATTACTTTGC
1 TTTGCTTTGTTTTATATTGCTTTGC
*
13082037 TTTGCTTT-TCTTTGTATTGCTTTGC
1 TTTGCTTTGT-TTTATATTGCTTTGC
13082062 TTTGCTTTGTTTTATATTGCTTTGC
1 TTTGCTTTGTTTTATATTGCTTTGC
* *
13082087 TTTGCTTTGCTTTACATTGCTTTGTATTAC
1 TTTGCTTTGTTTTATATTGCTTTG-----C
* *
13082117 TTTGCTTTGCTTTATATAGCTTTGC
1 TTTGCTTTGTTTTATATTGCTTTGC
13082142 TTTGC-----TTTATATTGCTTTGC
1 TTTGCTTTGTTTTATATTGCTTTGC
** * ** *
13082162 TTTATATTTCTTTGCT-TTCCTTTGC
1 TTT-GCTTTGTTTTATATTGCTTTGC
* *
13082187 TTT-ATATT-TCTTTACT-TTGCTTTAC
1 TTTGCT-TTGT-TTTA-TATTGCTTTGC
* *
13082212 ATTGCTTTGTATTAT-TTGCTTTGC
1 TTTGCTTTGTTTTATATTGCTTTGC
* ** *
13082236 TTTGCTTTGTTTTGT-TTTATATAGC
1 TTTGCTTTGTTTTATATTGCT-TTGC
13082261 TTTGCTTTGTTTTATATTGCTTTG-
1 TTTGCTTTGTTTTATATTGCTTTGC
* * * *
13082285 TATTACTTTGCTTTGTATAGCTTTGC
1 T-TTGCTTTGTTTTATATTGCTTTGC
* * * **
13082311 TTTGCTTTATATTGAT-TTGTTTTATTTTA
1 TTTGCTTTGT-TTTATATTG----CTTTGC
*
13082340 TATTGCTTTGTTTTATATT-ATTTCGC
1 T-TTGCTTTGTTTTATATTGCTTT-GC
* * **
13082366 TTTGTTTTGCTTT-GCTTG-TATTGC
1 TTTGCTTTGTTTTATATTGCT-TTGC
* *
13082390 TTTGTTTTGCTTTATATTGCTTTGC
1 TTTGCTTTGTTTTATATTGCTTTGC
* * *
13082415 TTTGCTTTG-CTTGTATTGCTTTGT
1 TTTGCTTTGTTTTATATTGCTTTGC
13082439 TTTGCTTT
1 TTTGCTTT
13082447 ATATTGCTTT
Statistics
Matches: 318, Mismatches: 58, Indels: 69
0.71 0.13 0.16
Matches are distributed among these distances:
20 17 0.05
23 3 0.01
24 68 0.21
25 174 0.55
26 15 0.05
29 8 0.03
30 33 0.10
ACGTcount: A:0.11, C:0.13, G:0.14, T:0.62
Consensus pattern (25 bp):
TTTGCTTTGTTTTATATTGCTTTGC
Found at i:13082391 original size:44 final size:44
Alignment explanation
Indices: 13082116--13082462 Score: 230
Period size: 44 Copynumber: 8.1 Consensus size: 44
13082106 CTTTGTATTA
* *
13082116 CTTTGCTTTGCTT-TATATAGCTTTGCTTTGCTTTATATTGCTTTG
1 CTTTGCTTTGCTTGTAT-T-GCTTTGTTTTGATTTATATTGCTTTG
* * * ** * * *
13082161 CTTT-ATAT--TTCT-TTGCTTTCCTTTGCTTTATATTTCTTTA
1 CTTTGCTTTGCTTGTATTGCTTTGTTTTGATTTATATTGCTTTG
* * *
13082201 CTTTGCTTTAC----ATTGCTTTGTATT-ATTTGCT-TTGCTTTG
1 CTTTGCTTTGCTTGTATTGCTTTGTTTTGATTT-ATATTGCTTTG
* * * *
13082240 CTTTGTTTTG-TTTTATATAGCTTTGCTTTGTTTTATATTGCTTTG
1 CTTTGCTTTGCTTGTAT-T-GCTTTGTTTTGATTTATATTGCTTTG
* * * * *
13082285 -TATTACTTTGCTTTGTATAGCTTTGCTTTGCTTTATATTGATTTG
1 CT-TTGCTTTGC-TTGTATTGCTTTGTTTTGATTTATATTGCTTTG
*
13082330 -TTT--TATT--TTATATTGCTTTGTTTT-ATATTAT-TTCGCTTTG
1 CTTTGCT-TTGCTTGTATTGCTTTGTTTTGAT-TTATATT-GCTTTG
* *
13082370 TTTTGCTTTGCTTGTATTGCTTTGTTTTGCTTTATATTGCTTTG
1 CTTTGCTTTGCTTGTATTGCTTTGTTTTGATTTATATTGCTTTG
*
13082414 CTTTGCTTTGCTTGTATTGCTTTGTTTTGCTTTATATTGCTTTG
1 CTTTGCTTTGCTTGTATTGCTTTGTTTTGATTTATATTGCTTTG
13082458 CTTTG
1 CTTTG
13082463 TTTTATATAC
Statistics
Matches: 241, Mismatches: 34, Indels: 55
0.73 0.10 0.17
Matches are distributed among these distances:
39 20 0.08
40 60 0.25
41 6 0.02
42 8 0.03
43 5 0.02
44 88 0.37
45 49 0.20
47 5 0.02
ACGTcount: A:0.11, C:0.13, G:0.14, T:0.62
Consensus pattern (44 bp):
CTTTGCTTTGCTTGTATTGCTTTGTTTTGATTTATATTGCTTTG
Found at i:13082947 original size:97 final size:97
Alignment explanation
Indices: 13082846--13083042 Score: 394
Period size: 97 Copynumber: 2.0 Consensus size: 97
13082836 TATACAAATA
13082846 AATATATTTATTCAATATACAAAAATTTAGTTCATTTATTTCTTTAATTATGTAAAATTGAATCA
1 AATATATTTATTCAATATACAAAAATTTAGTTCATTTATTTCTTTAATTATGTAAAATTGAATCA
13082911 AAATTAAACTTTTATGCATACATTTAAATCAT
66 AAATTAAACTTTTATGCATACATTTAAATCAT
13082943 AATATATTTATTCAATATACAAAAATTTAGTTCATTTATTTCTTTAATTATGTAAAATTGAATCA
1 AATATATTTATTCAATATACAAAAATTTAGTTCATTTATTTCTTTAATTATGTAAAATTGAATCA
13083008 AAATTAAACTTTTATGCATACATTTAAATCAT
66 AAATTAAACTTTTATGCATACATTTAAATCAT
13083040 AAT
1 AAT
13083043 CAAAATTTTA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 100 1.00
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (97 bp):
AATATATTTATTCAATATACAAAAATTTAGTTCATTTATTTCTTTAATTATGTAAAATTGAATCA
AAATTAAACTTTTATGCATACATTTAAATCAT
Found at i:13088683 original size:22 final size:23
Alignment explanation
Indices: 13088631--13088687 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
13088621 GCTGGGGAAA
*
13088631 TAGTAAGCACACACAGTGCAATC
1 TAGTAGGCACACACAGTGCAATC
13088654 TAGTAGGCACACACAGTGCAATC
1 TAGTAGGCACACACAGTGCAATC
13088677 -AGTAGGCACAC
1 TAGTAGGCACAC
13088688 GAGGTGCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 11 0.33
23 22 0.67
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (23 bp):
TAGTAGGCACACACAGTGCAATC
Found at i:13088708 original size:23 final size:23
Alignment explanation
Indices: 13088632--13088729 Score: 96
Period size: 23 Copynumber: 4.3 Consensus size: 23
13088622 CTGGGGAAAT
*
13088632 AGTAAGCACAC-ACAGTGC-AATC
1 AGTAAGCACACGA-AGTGCAAAAC
* *
13088654 TAGTAGGCACAC-ACAGTGC-AATC
1 -AGTAAGCACACGA-AGTGCAAAAC
* *
13088677 AGTAGGCACACGAGGTGCAAAAC
1 AGTAAGCACACGAAGTGCAAAAC
13088700 AGTAAGCACACGAAGTGCAAAAC
1 AGTAAGCACACGAAGTGCAAAAC
13088723 AGTAAGC
1 AGTAAGC
13088730 GCGCTAGCGT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
22 15 0.22
23 53 0.78
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.12
Consensus pattern (23 bp):
AGTAAGCACACGAAGTGCAAAAC
Found at i:13089595 original size:18 final size:19
Alignment explanation
Indices: 13089560--13089601 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
13089550 AAACTGATTT
13089560 TCTTCTCTCTTTAACTTTGC
1 TCTTCTCTCTTTAACTTT-C
*
13089580 TCTTCTCT-TTT-CCTTTC
1 TCTTCTCTCTTTAACTTTC
13089597 TCTTC
1 TCTTC
13089602 AATTTGATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 4 0.19
19 3 0.14
20 8 0.38
ACGTcount: A:0.05, C:0.33, G:0.02, T:0.60
Consensus pattern (19 bp):
TCTTCTCTCTTTAACTTTC
Found at i:13092366 original size:103 final size:103
Alignment explanation
Indices: 13092219--13092424 Score: 324
Period size: 103 Copynumber: 2.0 Consensus size: 103
13092209 ATATAAAATT
* *
13092219 TCATCACGTGGTTCAAATAGTTAGCATAATTATGTTGGAAATTTGAAAATTTAGGAACAATG-TA
1 TCATCACATGGTTCAAATAGTTAGAATAATTATGTTGGAAATTTGAAAATTTAGGAACAA-GATA
*
13092283 CAAATCAATTATATTCAAGTCACTTATGATGAAAACTTG
65 CAAACCAATTATATTCAAGTCACTTATGATGAAAACTTG
* * * *
13092322 TCATCACATGGTTCAGATAGTTAGAATAATTATGTTGTAAATTTGAAAATTTAGTAACGAGATAC
1 TCATCACATGGTTCAAATAGTTAGAATAATTATGTTGGAAATTTGAAAATTTAGGAACAAGATAC
*
13092387 AAACCCATTATATTCAAGTCACTTATGATGAAAACTTG
66 AAACCAATTATATTCAAGTCACTTATGATGAAAACTTG
13092425 ATTCGATGCT
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
102 1 0.01
103 93 0.99
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (103 bp):
TCATCACATGGTTCAAATAGTTAGAATAATTATGTTGGAAATTTGAAAATTTAGGAACAAGATAC
AAACCAATTATATTCAAGTCACTTATGATGAAAACTTG
Found at i:13095089 original size:19 final size:19
Alignment explanation
Indices: 13095065--13095120 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
13095055 TTATGTAAAA
13095065 TTAAATCATAATTAAAATT
1 TTAAATCATAATTAAAATT
*
13095084 TTAAAT-ATATATTTAAATT
1 TTAAATCATA-ATTAAAATT
* *
13095103 AT-AATCAAAATTACAAAT
1 TTAAATCATAATTA-AAAT
13095121 ATATAATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
18 9 0.30
19 21 0.70
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
TTAAATCATAATTAAAATT
Found at i:13095107 original size:31 final size:31
Alignment explanation
Indices: 13095063--13095146 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 31
13095053 AATTATGTAA
*
13095063 AATTAAATCATAATTAAAATTTTAAATATAT
1 AATTAAATTATAATTAAAATTTTAAATATAT
* * **
13095094 ATTTAAATTATAATCAAAATTACAAATATAT
1 AATTAAATTATAATTAAAATTTTAAATATAT
* *
13095125 AATTATA-TA-AAATAAAATTTTA
1 AATTAAATTATAATTAAAATTTTA
13095147 TGTATTAAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 9 0.21
30 2 0.05
31 31 0.74
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (31 bp):
AATTAAATTATAATTAAAATTTTAAATATAT
Found at i:13095132 original size:37 final size:36
Alignment explanation
Indices: 13095062--13095133 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
13095052 TAATTATGTA
* *
13095062 AAATTAAATCATAATTAAAATTTTAAATATATATTT
1 AAATTAAATCAAAATTAAAATTATAAATATATATTT
*
13095098 AAATTATAATCAAAATTACAAATATATAATTATATA
1 AAATTA-AATCAAAATTA-AAAT-TATAAATATATA
13095134 AAATAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 6 0.20
37 10 0.33
38 4 0.13
39 10 0.33
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (36 bp):
AAATTAAATCAAAATTAAAATTATAAATATATATTT
Found at i:13095222 original size:18 final size:18
Alignment explanation
Indices: 13095201--13095235 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13095191 TATCTATCCC
*
13095201 AAAATTAAATAAAAGAGA
1 AAAAATAAATAAAAGAGA
*
13095219 AAAAATACATAAAAGAG
1 AAAAATAAATAAAAGAG
13095236 GGTCACCGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.11, T:0.14
Consensus pattern (18 bp):
AAAAATAAATAAAAGAGA
Found at i:13119162 original size:14 final size:12
Alignment explanation
Indices: 13119153--13119185 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
13119143 TCATAATAAC
13119153 ATATTAATAAAA
1 ATATTAATAAAA
13119165 AT-TTAATTAAAA
1 ATATTAA-TAAAA
13119177 ATATTAATA
1 ATATTAATA
13119186 TTATAACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.21
12 11 0.58
13 4 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATATTAATAAAA
Found at i:13122184 original size:13 final size:13
Alignment explanation
Indices: 13122168--13122192 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13122158 CATATAACAA
13122168 AAATTAACCGAAG
1 AAATTAACCGAAG
13122181 AAATTAACCGAA
1 AAATTAACCGAA
13122193 TGATTAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATTAACCGAAG
Found at i:13137702 original size:25 final size:24
Alignment explanation
Indices: 13137674--13137736 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
13137664 AATTTAAAAG
* *
13137674 AAAAGCATTTTAAGTATATTTATTT
1 AAAAGCATTTCAAGTATA-TTAATT
* * *
13137699 AAAATCAATTCAATTATATTAATT
1 AAAAGCATTTCAAGTATATTAATT
13137723 AAAAGCTATTTCAA
1 AAAAGC-ATTTCAA
13137737 CACTACAATT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
24 10 0.33
25 20 0.67
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (24 bp):
AAAAGCATTTCAAGTATATTAATT
Found at i:13141485 original size:26 final size:26
Alignment explanation
Indices: 13141455--13141508 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
13141445 AAATTTCATC
*
13141455 AAGATTGAACCAAATTTTAAACTTTA
1 AAGATTGAAACAAATTTTAAACTTTA
13141481 AAGATTGAAACAAATTTTAAACTTTA
1 AAGATTGAAACAAATTTTAAACTTTA
13141507 AA
1 AA
13141509 TTTGGAGTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.33
Consensus pattern (26 bp):
AAGATTGAAACAAATTTTAAACTTTA
Found at i:13148553 original size:3 final size:3
Alignment explanation
Indices: 13148545--13148573 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
13148535 TCTAGACTGT
13148545 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
13148574 TTTTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:13158268 original size:23 final size:23
Alignment explanation
Indices: 13158225--13158269 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13158215 GTATATTTCA
* *
13158225 AAGATATTATTTTTAAGCAAGTT
1 AAGATAATATTTATAAGCAAGTT
13158248 AAGATAATATGTTATAA-CAAGT
1 AAGATAATAT-TTATAAGCAAGT
13158270 GACGGAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.44, C:0.04, G:0.13, T:0.38
Consensus pattern (23 bp):
AAGATAATATTTATAAGCAAGTT
Found at i:13170719 original size:17 final size:16
Alignment explanation
Indices: 13170691--13170732 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
13170681 TGGACATCTA
13170691 ATTTTAATTTGAGACTTT
1 ATTTT-ATTTGAG-CTTT
*
13170709 ATTTTATTTGAGTTTT
1 ATTTTATTTGAGCTTT
13170725 A-TTTATTT
1 ATTTTATTT
13170733 AGAATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 7 0.30
16 4 0.17
17 7 0.30
18 5 0.22
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.64
Consensus pattern (16 bp):
ATTTTATTTGAGCTTT
Found at i:13170752 original size:6 final size:6
Alignment explanation
Indices: 13170741--13170810 Score: 72
Period size: 6 Copynumber: 12.0 Consensus size: 6
13170731 TTAGAATAAT
** * *
13170741 TTTAAA TTTAAA CATAAA TTTAAA TTTAAA TTTTAA --TAAA TTCAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
**
13170787 TTTAAA AATAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA
13170811 ATAAATCCAA
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
4 3 0.06
6 47 0.94
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (6 bp):
TTTAAA
Found at i:13170762 original size:18 final size:18
Alignment explanation
Indices: 13170735--13170816 Score: 94
Period size: 18 Copynumber: 4.4 Consensus size: 18
13170725 ATTTATTTAG
*
13170735 AATAATTTTAAATTTAAA
1 AATAAATTTAAATTTAAA
*
13170753 CATAAATTTAAATTTAAA
1 AATAAATTTAAATTTAAA
*
13170771 TTTTAATAAATTCAAATTTAAA
1 ----AATAAATTTAAATTTAAA
13170793 AATAAATTTAAATTT-AA
1 AATAAATTTAAATTTAAA
13170810 AATAAAT
1 AATAAAT
13170817 CCAAAATGGG
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
17 9 0.16
18 30 0.55
22 16 0.29
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
AATAAATTTAAATTTAAA
Found at i:13170788 original size:40 final size:40
Alignment explanation
Indices: 13170735--13170810 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
13170725 ATTTATTTAG
* * *
13170735 AATAATTTTAAATTTAAACATAAATTTAAATTTAAATTTT
1 AATAAATTCAAATTTAAAAATAAATTTAAATTTAAATTTT
13170775 AATAAATTCAAATTTAAAAATAAATTTAAATTTAAA
1 AATAAATTCAAATTTAAAAATAAATTTAAATTTAAA
13170811 ATAAATCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (40 bp):
AATAAATTCAAATTTAAAAATAAATTTAAATTTAAATTTT
Found at i:13171422 original size:49 final size:50
Alignment explanation
Indices: 13171256--13171495 Score: 215
Period size: 49 Copynumber: 4.8 Consensus size: 50
13171246 AGCTATAATG
* * * *
13171256 TCTTCGTGGTACTAGATTCGTCGTTGCGGCTTAAATCTTTCCCTTAGCGTT
1 TCTTCATGGTACTGGATTCGTCGTTGCGGCTTAAATCTTT-CCTTACCGTA
* * * * * **
13171307 TC-TGA-GGTACACGG-TCCGTCGTTGCGACTTAGATCTTTCCCTT-TTGTA
1 TCTTCATGGTAC-TGGATTCGTCGTTGCGGCTTAAATCTTT-CCTTACCGTA
* *
13171355 TCTT--TGCAGTACTAGATTCGTCGTTGAGGCTTAAATCTTTCCTT-CCGTA
1 TCTTCATG--GTACTGGATTCGTCGTTGCGGCTTAAATCTTTCCTTACCGTA
* * * *
13171404 TCTTCATGGTACTGGATTCGTCGTTGCGGCTGAAATTTTTTCTTACCATA
1 TCTTCATGGTACTGGATTCGTCGTTGCGGCTTAAATCTTTCCTTACCGTA
* *
13171454 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCC
1 TCTTCATGGTACTGGATTCGTCGTTGCGGCTTAAATCTTTCC
13171496 CTTCATGTTT
Statistics
Matches: 151, Mismatches: 29, Indels: 19
0.76 0.15 0.10
Matches are distributed among these distances:
48 5 0.03
49 75 0.50
50 67 0.44
51 4 0.03
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.40
Consensus pattern (50 bp):
TCTTCATGGTACTGGATTCGTCGTTGCGGCTTAAATCTTTCCTTACCGTA
Found at i:13171514 original size:99 final size:99
Alignment explanation
Indices: 13171256--13171600 Score: 299
Period size: 99 Copynumber: 3.5 Consensus size: 99
13171246 AGCTATAATG
13171256 TCTTCGTGGTACTAGATTCGTCGTTGCGGCTTAAATCTTTCCCTT-AGCGTTTCTGAGGTACACG
1 TCTTCGTGGTACTAGATTCGTCGTTGCGGCTTAAATCTTTCCCTTCA-CGTTTCTGAGGTACACG
* * ***
13171320 GTCCGTCGTTGCGACTTAGATCTTTCCCTTTTGTA
65 GTCCGTCGTTGCGACTGAAATCTTTCCCTTCCATA
* ** * * * *
13171355 TCTTTGCAGTACTAGATTCGTCGTTGAGGCTTAAATCTTT-CCTTC-CGTATCTTCATGGTAC-T
1 TCTTCGTGGTACTAGATTCGTCGTTGCGGCTTAAATCTTTCCCTTCACGTTTC-TGA-GGTACAC
* * **
13171417 GGATTCGTCGTTGCGGCTGAAAT-TTTTTCTTACCATA
64 GG-TCCGTCGTTGCGACTGAAATCTTTCCCTT-CCATA
* * *
13171454 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACACGG
1 TCTTCGTGGTACTAGATTCGTCGTTGCGGCTTAAATCTTTCCCTTCACGTTTCTGAGGTACACGG
*** * * *
13171519 TCTACCGTTGCGACTTAGA-CATTTCCCTT-TAGTA
66 TCCGTCGTTGCGACTGAAATC-TTTCCCTTCCA-TA
* * * * *
13171553 TCTTTGTGATACTGGATCCGTCGTTGTGGTCTTAAATCTTTCCCTTCA
1 TCTTCGTGGTACTAGATTCGTCGTTGCGG-CTTAAATCTTTCCCTTCA
13171601 TGTCTTCATG
Statistics
Matches: 193, Mismatches: 41, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
97 5 0.03
98 15 0.08
99 136 0.70
100 33 0.17
101 4 0.02
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.40
Consensus pattern (99 bp):
TCTTCGTGGTACTAGATTCGTCGTTGCGGCTTAAATCTTTCCCTTCACGTTTCTGAGGTACACGG
TCCGTCGTTGCGACTGAAATCTTTCCCTTCCATA
Found at i:13171714 original size:50 final size:50
Alignment explanation
Indices: 13171312--13172295 Score: 263
Period size: 50 Copynumber: 19.7 Consensus size: 50
13171302 GCGTTTCTGA
* *
13171312 GGTACACGGTCCGTCGTTGCGACTTAGATCTTTCCCTTTTGTATCTTTGC
1 GGTACACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTTTGT
* * * * * * * ** **
13171362 AGTACTA-GATTCGTCGTTGAGGCTTAAATCTTT-CCTTCCGTATCTTCAT
1 GGTAC-ACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTTTGT
* * * * * * ** *** *
13171411 GGTAC-TGGATTCGTCGTTGCGGCTGAAAT-TTTTTCTTACCATATCTTCGT
1 GGTACACGG-TCCGCCGTTGCGACTTAGATCTTTCCCTT-TTGTATCTTTGT
* * * * * * *
13171461 GGTAC-TGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGT-T-TCTGA
1 GGTACACGG-TCCGCCGTTGCGACTTAGATCTTTCCCTT-TTGTATCTTTGT
** *
13171510 GGTACACGGTCTACCGTTGCGACTTAGA-CATTTCCCTTTAGTATCTTTGT
1 GGTACACGGTCCGCCGTTGCGACTTAGATC-TTTCCCTTTTGTATCTTTGT
* * * * * * * **
13171560 GATAC-TGGATCCGTCGTTGTGGTCTTAAATCTTTCCCTTCATG--TCTTCAT
1 GGTACACGG-TCCGCCGTTG-CGACTTAGATCTTTCCCTT-TTGTATCTTTGT
** ** * * * * * *
13171610 GGTACTA-AATTTGCCATTGCGGCTTAAATCTTTCTCTTCT-TATCTTCTGA
1 GGTAC-ACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTT-TGT
* *
13171660 GGTACACGGTCCGCCATTGCGACTTAGACCTTTCCCTTTTGTATCTTTGT
1 GGTACACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTTTGT
* * * * **
13171710 GGTACTA-GATCCGCCGTTGTGGTCTTAGATCTTTCCCTTCATG--TCTTCAT
1 GGTAC-ACGGTCCGCCGTTG-CGACTTAGATCTTTCCCTT-TTGTATCTTTGT
* * * * * * *
13171760 GGTAC-TGGATTCGCCGTTGCGGCTTAAATCTTT-TCTTTAT-TATTTTCTGA
1 GGTACACGG-TCCGCCGTTGCGACTTAGATCTTTCCCTTT-TGTATCTT-TGT
* * * * *
13171810 GGTACACGGCCCGTCGTTACAACTTAGACCTTTCCCTTTTGTATCTTTGT
1 GGTACACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTTTGT
* * ** * * * **
13171860 GGTAC-TGGATTCGTAGTTGTGGTCTTAGATCTTTCCCTTCATG--TCTTCAT
1 GGTACACGG-TCCGCCGTTG-CGACTTAGATCTTTCCCTT-TTGTATCTTTGT
* ** * * * * * * *
13171910 GATACTA-AATTCACCGTTGCGGCTTAAATCTTTCACTTTT-TGTCTTCTGA
1 GGTAC-ACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTT-TGT
* * *
13171960 GGTACACAGTCCGCCGTTGCGAATTAGACCTTTCCCTTTTGTATCTTTGT
1 GGTACACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTTTGT
* * * * * **
13172010 GGTAC-TGGATTCGCCGTTGTGGTCTTAGATCTTTCCCTTCATG--TCTTCAT
1 GGTACACGG-TCCGCCGTTG-CGACTTAGATCTTTCCCTT-TTGTATCTTTGT
* * * * * * *
13172060 GGTAC-TGGATTCGCCATTGCGGCTTAAATCTTTCCCTTCTTGTCT-TTTGA
1 GGTACACGG-TCCGCCGTTGCGACTTAGATCTTTCCCTT-TTGTATCTTTGT
* *
13172110 GGTACACGGTCCACCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGT
1 GGTACACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTTTGT
** * * * **
13172160 GGTA-GTGGATCCGCCGTCGCGGTCTTAGATCTTTCCCTTCATG--TCTTCAT
1 GGTACACGG-TCCGCCGTTGC-GACTTAGATCTTTCCCTT-TTGTATCTTTGT
* * * * * * *
13172210 GGTAC-TGGATTCGCTGTTGCGGCTTAAATCTTTCCCTTCTTGTCT-TTTGA
1 GGTACACGG-TCCGCCGTTGCGACTTAGATCTTTCCCTT-TTGTATCTTTGT
* * * *
13172260 GGTACACGGTCTGCCATCGCGGTCTTAGATCTTTCC
1 GGTACACGGTCCGCCGTTGC-GACTTAGATCTTTCC
13172296 TTTCATGCAC
Statistics
Matches: 680, Mismatches: 196, Indels: 115
0.69 0.20 0.12
Matches are distributed among these distances:
48 13 0.02
49 172 0.25
50 359 0.53
51 126 0.19
52 10 0.01
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.40
Consensus pattern (50 bp):
GGTACACGGTCCGCCGTTGCGACTTAGATCTTTCCCTTTTGTATCTTTGT
Found at i:13172280 original size:100 final size:101
Alignment explanation
Indices: 13171880--13172302 Score: 330
Period size: 100 Copynumber: 4.2 Consensus size: 101
13171870 TCGTAGTTGT
* ** *
13171880 GGTCTTAGATCTTTCCCTTCATGTCTTCATGATACTAAATTCACCGTTGCGGCTTAAATCTTTCA
1 GGTCTTAGATCTTTCCCTTCATGTCTTCATGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCC
* * * * *
13171945 CTTTTTGTCTTCTGAGGTACACAG-TCCGCCGTTGC
66 CTTCTTGTCTTTTGAGGTACACGGATCCGCCATCGC
** * * ** * * *
13171980 -GAATTAGACCTTTCCCTT-TTGTATCTTTGTGGTACTGGATTCGCCGTTGTGGTCTTAGATCTT
1 GGTCTTAGATCTTTCCCTTCATG--TCTTCATGGTACTGGATTCACCGTTGCGG-CTTAAATCTT
* * * * *
13172043 TCCCTTCATGTC--TTCATGGTAC-TGGATTCGCCATTGC
63 TCCCTTCTTGTCTTTTGA-GGTACACGGATCCGCCATCGC
* * * * * * * *
13172080 GG-CTTAAATCTTTCCCTTCTTGTCTT-TTGAGGTACACGG-TCCACCGTTGCGACTTAGACCTT
1 GGTCTTAGATCTTTCCCTTCATGTCTTCAT--GGTAC-TGGATTCACCGTTGCGGCTTAAATCTT
* * ** *
13172142 TCCCTT-TTGTATCTTTGTGGTA-GTGGATCCGCCGTCGC
63 TCCCTTCTTGTCT-TTTGAGGTACACGGATCCGCCATCGC
* *
13172180 GGTCTTAGATCTTTCCCTTCATGTCTTCATGGTACTGGATTCGCTGTTGCGGCTTAAATCTTTCC
1 GGTCTTAGATCTTTCCCTTCATGTCTTCATGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCC
*
13172245 CTTCTTGTCTTTTGAGGTACACGG-TCTGCCATCGC
66 CTTCTTGTCTTTTGAGGTACACGGATCCGCCATCGC
*
13172280 GGTCTTAGATCTTTCCTTTCATG
1 GGTCTTAGATCTTTCCCTTCATG
13172303 CACGGTATTG
Statistics
Matches: 249, Mismatches: 55, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
98 6 0.02
99 39 0.16
100 148 0.59
101 55 0.22
102 1 0.00
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.40
Consensus pattern (101 bp):
GGTCTTAGATCTTTCCCTTCATGTCTTCATGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCC
CTTCTTGTCTTTTGAGGTACACGGATCCGCCATCGC
Found at i:13172298 original size:150 final size:150
Alignment explanation
Indices: 13171454--13172270 Score: 1213
Period size: 150 Copynumber: 5.5 Consensus size: 150
13171444 TCTTACCATA
* *
13171454 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGT-TTCTGAGGTACACG
1 TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCTTGTCTTCTGAGGTACACG
** * * * *
13171518 GTCTACCGTTGCGACTTAGACATTTCCCTTTAGTATCTTTGTGATACTGGATCCGTCGTTGTGGT
66 GTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCCGTTGTGGT
*
13171583 CTTAAATCTTTCCCTTCATG
131 CTTAGATCTTTCCCTTCATG
** * * * *
13171603 TCTTCATGGTACTAAATTTGCCATTGCGGCTTAAATCTTTCTCTTCTTATCTTCTGAGGTACACG
1 TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCTTGTCTTCTGAGGTACACG
* *
13171668 GTCCGCCATTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTACTAGATCCGCCGTTGTGGT
66 GTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCCGTTGTGGT
13171733 CTTAGATCTTTCCCTTCATG
131 CTTAGATCTTTCCCTTCATG
* * * * *
13171753 TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTTCTTTATTATTTTCTGAGGTACACG
1 TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCTTGTCTTCTGAGGTACACG
* * * * * **
13171818 GCCCGTCGTTACAACTTAGACCTTTCCCTTTTGTATCTTTGTGGTACTGGATTCGTAGTTGTGGT
66 GTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCCGTTGTGGT
13171883 CTTAGATCTTTCCCTTCATG
131 CTTAGATCTTTCCCTTCATG
* ** * * * *
13171903 TCTTCATGATACTAAATTCACCGTTGCGGCTTAAATCTTTCACTTTTTGTCTTCTGAGGTACACA
1 TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCTTGTCTTCTGAGGTACACG
* *
13171968 GTCCGCCGTTGCGAATTAGACCTTTCCCTTTTGTATCTTTGTGGTACTGGATTCGCCGTTGTGGT
66 GTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCCGTTGTGGT
13172033 CTTAGATCTTTCCCTTCATG
131 CTTAGATCTTTCCCTTCATG
* *
13172053 TCTTCATGGTACTGGATTCGCCATTGCGGCTTAAATCTTTCCCTTCTTGTCTTTTGAGGTACACG
1 TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCTTGTCTTCTGAGGTACACG
* * * *
13172118 GTCCACCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTAGTGGATCCGCCGTCGCGGT
66 GTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCCGTTGTGGT
13172183 CTTAGATCTTTCCCTTCATG
131 CTTAGATCTTTCCCTTCATG
* *
13172203 TCTTCATGGTACTGGATTCGCTGTTGCGGCTTAAATCTTTCCCTTCTTGTCTTTTGAGGTACACG
1 TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCTTGTCTTCTGAGGTACACG
13172268 GTC
66 GTC
13172271 TGCCATCGCG
Statistics
Matches: 597, Mismatches: 70, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
149 42 0.07
150 555 0.93
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (150 bp):
TCTTCATGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCTTGTCTTCTGAGGTACACG
GTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCCGTTGTGGT
CTTAGATCTTTCCCTTCATG
Found at i:13180403 original size:6 final size:6
Alignment explanation
Indices: 13180392--13180443 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
13180382 TTAGAATAAT
** * *
13180392 TTTAAA TTTAAA CATAAA TTTAAA TTTAAA TTTTAA --CAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
13180438 TTTAAA
1 TTTAAA
13180444 ATAAATCTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
4 2 0.06
6 34 0.94
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:13180413 original size:18 final size:18
Alignment explanation
Indices: 13180387--13180421 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
13180377 TTTATTTAGA
*
13180387 ATAATTTTAAATTTAAAC
1 ATAAATTTAAATTTAAAC
13180405 ATAAATTTAAATTTAAA
1 ATAAATTTAAATTTAAA
13180422 TTTTAACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
ATAAATTTAAATTTAAAC
Found at i:13185694 original size:6 final size:6
Alignment explanation
Indices: 13185680--13185710 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
13185670 TGAATTCATC
*
13185680 TTCTAT TTCTTT TTCTTT TTCTTT TTCTTT T
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT T
13185711 AAATCTTCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (6 bp):
TTCTTT
Found at i:13195592 original size:2 final size:2
Alignment explanation
Indices: 13195587--13195614 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13195577 AAACAGTGAA
13195587 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
13195615 ACTGGAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:13202101 original size:15 final size:15
Alignment explanation
Indices: 13202081--13202140 Score: 79
Period size: 15 Copynumber: 4.1 Consensus size: 15
13202071 AATAAACTGC
*
13202081 ATAATCTGCTCTTGA
1 ATAATCTGCTATTGA
13202096 ATAATCTGCTATTGA
1 ATAATCTGCTATTGA
*
13202111 ATAATCTGCTATAG-
1 ATAATCTGCTATTGA
*
13202125 A-AATCTGCTAGTGA
1 ATAATCTGCTATTGA
13202139 AT
1 AT
13202141 TCTCTGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
13 10 0.26
14 2 0.05
15 27 0.69
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (15 bp):
ATAATCTGCTATTGA
Found at i:13207598 original size:58 final size:58
Alignment explanation
Indices: 13207502--13207647 Score: 183
Period size: 58 Copynumber: 2.5 Consensus size: 58
13207492 ATATATTATA
* *
13207502 ATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAA-AT-ATT-ATTAAATTACAT
1 ATTTTTATTAAATT-ATA-TTTAATAATAATTATATTAAAATATAATTAAATAAATTA-AT
* *
13207559 ATTATTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATAATTAAATAAATTAAT
1 A-T-TTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
13207619 ATTTTTATTAAATTATATTTAATAATAAT
1 ATTTTTATTAAATTATATTTAATAATAAT
13207648 CATTAAAATT
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
57 1 0.01
58 48 0.62
59 11 0.14
60 10 0.13
61 8 0.10
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (58 bp):
ATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAATAAATTAAT
Found at i:13207838 original size:16 final size:16
Alignment explanation
Indices: 13207817--13207888 Score: 90
Period size: 16 Copynumber: 4.5 Consensus size: 16
13207807 TGAATTACTG
13207817 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
13207833 ATTACAGCTATATTCT
1 ATTACAGCTCTATTCC
* *
13207849 ATTACAGTTTTATTCC
1 ATTACAGCTCTATTCC
* *
13207865 ATTACACCTCTATTCT
1 ATTACAGCTCTATTCC
13207881 ATTACAGC
1 ATTACAGC
13207889 GAACCAAACG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:13207863 original size:32 final size:32
Alignment explanation
Indices: 13207817--13207888 Score: 108
Period size: 32 Copynumber: 2.2 Consensus size: 32
13207807 TGAATTACTG
*
13207817 ATTACAGCTCTATTCCATTACAGCTATATTCT
1 ATTACAGCTCTATTCCATTACACCTATATTCT
* * *
13207849 ATTACAGTTTTATTCCATTACACCTCTATTCT
1 ATTACAGCTCTATTCCATTACACCTATATTCT
13207881 ATTACAGC
1 ATTACAGC
13207889 GAACCAAACG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (32 bp):
ATTACAGCTCTATTCCATTACACCTATATTCT
Found at i:13211046 original size:62 final size:63
Alignment explanation
Indices: 13210930--13211057 Score: 240
Period size: 62 Copynumber: 2.0 Consensus size: 63
13210920 AATGATATCA
13210930 TTTCTTGTAACTAATTATGGTTTTCATATAATGGTATGAGTGGTTAAATAGTTCAATTACTAGT
1 TTTCTTGTAACTAATTATGGTTTTCA-ATAATGGTATGAGTGGTTAAATAGTTCAATTACTAGT
13210994 TTTCTTGTAACTAATTATGGTTTTC-ATAATGGTATGAGTGGTTAAATAGTTCAATTACTAGT
1 TTTCTTGTAACTAATTATGGTTTTCAATAATGGTATGAGTGGTTAAATAGTTCAATTACTAGT
13211056 TT
1 TT
13211058 GATTGCCTGA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 39 0.61
64 25 0.39
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (63 bp):
TTTCTTGTAACTAATTATGGTTTTCAATAATGGTATGAGTGGTTAAATAGTTCAATTACTAGT
Found at i:13215717 original size:23 final size:23
Alignment explanation
Indices: 13215669--13215735 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
13215659 CATTAAATCG
* * *
13215669 TTTAGAATAGTTTTTTATTATTA-
1 TTTAAAATA-TTTTTTATAATAAT
13215692 TTTAAAATGATTTTTTATAATAAT
1 TTTAAAAT-ATTTTTTATAATAAT
*
13215716 TTTAAACTA-TTTTTATAATA
1 TTTAAAATATTTTTTATAATA
13215736 GTCAACAACC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
22 11 0.29
23 19 0.50
24 8 0.21
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (23 bp):
TTTAAAATATTTTTTATAATAAT
Found at i:13217343 original size:27 final size:27
Alignment explanation
Indices: 13217303--13217364 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
13217293 TAAGGGTGTA
* * * *
13217303 AGATCGGGATCTGATGTGGTGGATATT
1 AGATCGGAAACTGAAGTGGTGGATATC
13217330 AGATCGGAAACTGAAGTGGTGGATATC
1 AGATCGGAAACTGAAGTGGTGGATATC
*
13217357 AAATCGGA
1 AGATCGGA
13217365 CGATGTCGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.34, T:0.26
Consensus pattern (27 bp):
AGATCGGAAACTGAAGTGGTGGATATC
Found at i:13220148 original size:26 final size:26
Alignment explanation
Indices: 13220112--13220169 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
13220102 AATTTTATTA
* * * *
13220112 TTTTAGTAATTTATATGTTTATGATT
1 TTTTAATAATTAAAATGTTTATCATT
*
13220138 TTTTAATAATTAAAATTTTTATCATT
1 TTTTAATAATTAAAATGTTTATCATT
13220164 TTTTAA
1 TTTTAA
13220170 GCTTCAAGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (26 bp):
TTTTAATAATTAAAATGTTTATCATT
Found at i:13229180 original size:18 final size:18
Alignment explanation
Indices: 13229157--13229191 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
13229147 TTGACCGGTA
13229157 AAAAAGTCAAAAAAATAC
1 AAAAAGTCAAAAAAATAC
13229175 AAAAAGTCAAAAAAATA
1 AAAAAGTCAAAAAAATA
13229192 GTTATGGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.74, C:0.09, G:0.06, T:0.11
Consensus pattern (18 bp):
AAAAAGTCAAAAAAATAC
Found at i:13229312 original size:53 final size:53
Alignment explanation
Indices: 13229155--13229273 Score: 156
Period size: 53 Copynumber: 2.3 Consensus size: 53
13229145 TGTTGACCGG
* ** *
13229155 TAAAAAAGTCA-AAAAAATACAAA-AAGTCA-AAAAAATAG-TTATGGTGACGTT
1 TAAAAACGTCACAAAAAATA-AAATAAGTCACCGAGAATAGCTT-TGGTGACGTT
13229206 TAAAAACGTCACAAAAAATAAAATAAGTCACCGAGAATAGCTTTGGTGACGTT
1 TAAAAACGTCACAAAAAATAAAATAAGTCACCGAGAATAGCTTTGGTGACGTT
13229259 TAAAAACGTCACAAA
1 TAAAAACGTCACAAA
13229274 TAATCTTAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
51 13 0.22
52 14 0.23
53 31 0.52
54 2 0.03
ACGTcount: A:0.52, C:0.13, G:0.14, T:0.21
Consensus pattern (53 bp):
TAAAAACGTCACAAAAAATAAAATAAGTCACCGAGAATAGCTTTGGTGACGTT
Found at i:13231400 original size:2 final size:2
Alignment explanation
Indices: 13231393--13231423 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13231383 TTTCTATCTT
13231393 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13231424 GTTATAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13237979 original size:3 final size:3
Alignment explanation
Indices: 13237971--13237999 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
13237961 AAGAGGCAGA
13237971 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
13238000 AAGAGAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:13241406 original size:3 final size:3
Alignment explanation
Indices: 13241398--13241423 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
13241388 TCTCCATACT
13241398 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
13241424 TTTTAACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:13246768 original size:17 final size:17
Alignment explanation
Indices: 13246743--13246776 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13246733 TCATTTTACT
13246743 TATAATTTAAATACATA
1 TATAATTTAAATACATA
*
13246760 TATATTTTAAATACATA
1 TATAATTTAAATACATA
13246777 ATTTTTACGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
TATAATTTAAATACATA
Found at i:13252282 original size:28 final size:29
Alignment explanation
Indices: 13252203--13252281 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
13252193 ATATCATAAT
* * *
13252203 TATACATTAATTATAATTTAATATGTAATTG
1 TATACATAAATTTTAATTT--TGTGTAATTG
*
13252234 TATATATAAATTTTAATTTTGTGTAATT-
1 TATACATAAATTTTAATTTTGTGTAATTG
13252262 TATACATAAAATTTTAATTT
1 TATACAT-AAATTTTAATTT
13252282 GATCCAATTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 6 0.14
29 20 0.48
31 16 0.38
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATACATAAATTTTAATTTTGTGTAATTG
Found at i:13255052 original size:21 final size:20
Alignment explanation
Indices: 13255028--13255066 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
13255018 TTAAAAAAAT
13255028 TATAACATTTTTATGAATAAG
1 TATAACATTTTTAT-AATAAG
**
13255049 TATATTATTTTTATAATA
1 TATAACATTTTTATAATA
13255067 TGTAACATGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (20 bp):
TATAACATTTTTATAATAAG
Found at i:13256664 original size:24 final size:24
Alignment explanation
Indices: 13256627--13256673 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
13256617 GCACTTAGAT
* *
13256627 CTTGCAAACCTGTTTGTGAACCTA
1 CTTGCAAACATGTTTGCGAACCTA
*
13256651 CTTGCGAACATGTTTGCGAACCT
1 CTTGCAAACATGTTTGCGAACCT
13256674 GCCTCTAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (24 bp):
CTTGCAAACATGTTTGCGAACCTA
Found at i:13275511 original size:12 final size:12
Alignment explanation
Indices: 13275494--13275529 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
13275484 ACAATTTAAT
13275494 TATTATATTTTA
1 TATTATATTTTA
13275506 TATTATATTTTA
1 TATTATATTTTA
* *
13275518 CATAATATTTTA
1 TATTATATTTTA
13275530 ACAATTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (12 bp):
TATTATATTTTA
Found at i:13275781 original size:13 final size:14
Alignment explanation
Indices: 13275763--13275791 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
13275753 AATTAGACTG
13275763 AATTGATTGG-TCA
1 AATTGATTGGATCA
13275776 AATTGATTGGATCA
1 AATTGATTGGATCA
13275790 AA
1 AA
13275792 AGTCAATCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (14 bp):
AATTGATTGGATCA
Found at i:13279376 original size:55 final size:55
Alignment explanation
Indices: 13279260--13279373 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 55
13279250 CATCGCCGTT
* *
13279260 TAATATTTTTCACAAAACCCTTCTCTAATATCTGATTTGTAAAGTTGCCCCAAAA
1 TAATATTTTTCACAAAACCCTTCTCTAATATCTGATTTCTAAAGTGGCCCCAAAA
* * * *
13279315 TAATATTTTTCACAAAACCCTTTTTTAATGTCTGATTTCT-AAGTGGCCCCCAAA
1 TAATATTTTTCACAAAACCCTTCTCTAATATCTGATTTCTAAAGTGGCCCCAAAA
13279369 -AATAT
1 TAATAT
13279374 ATTCACATGA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 5 0.09
54 12 0.23
55 36 0.68
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (55 bp):
TAATATTTTTCACAAAACCCTTCTCTAATATCTGATTTCTAAAGTGGCCCCAAAA
Found at i:13283881 original size:27 final size:28
Alignment explanation
Indices: 13283815--13283885 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 28
13283805 TTTGGAGCTC
*
13283815 TTTTTTAA-TTTTTAATTAATATACATA
1 TTTTTTAAGTTTTTAATTAACATACATA
13283842 TTATTTTCAAGTTTTTAATTAACA-AGCATA
1 TT-TTTT-AAGTTTTTAATTAACATA-CATA
13283872 -TTTTTAAGTTTTTA
1 TTTTTTAAGTTTTTA
13283886 GTTCATGTCG
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
27 11 0.28
28 8 0.21
29 4 0.10
30 16 0.41
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (28 bp):
TTTTTTAAGTTTTTAATTAACATACATA
Found at i:13284041 original size:14 final size:16
Alignment explanation
Indices: 13284017--13284049 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
13284007 ATAAACTAAC
13284017 TTTTTGATATAT-ATT
1 TTTTTGATATATAATT
13284032 TTTTTG-TATATAATT
1 TTTTTGATATATAATT
13284047 TTT
1 TTT
13284050 ATATGTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (16 bp):
TTTTTGATATATAATT
Found at i:13291793 original size:79 final size:79
Alignment explanation
Indices: 13291697--13291850 Score: 308
Period size: 79 Copynumber: 1.9 Consensus size: 79
13291687 TCATGTCAAT
13291697 ATTTATTTTTGGTGGAATTTAGACTTATACCCTTATATGACATTTATAGATAAAACATTAACTTC
1 ATTTATTTTTGGTGGAATTTAGACTTATACCCTTATATGACATTTATAGATAAAACATTAACTTC
13291762 TCATCTCCTTTGAC
66 TCATCTCCTTTGAC
13291776 ATTTATTTTTGGTGGAATTTAGACTTATACCCTTATATGACATTTATAGATAAAACATTAACTTC
1 ATTTATTTTTGGTGGAATTTAGACTTATACCCTTATATGACATTTATAGATAAAACATTAACTTC
13291841 TCATCTCCTT
66 TCATCTCCTT
13291851 AAGTTTTAGG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.44
Consensus pattern (79 bp):
ATTTATTTTTGGTGGAATTTAGACTTATACCCTTATATGACATTTATAGATAAAACATTAACTTC
TCATCTCCTTTGAC
Found at i:13291851 original size:41 final size:41
Alignment explanation
Indices: 13291727--13291851 Score: 111
Period size: 41 Copynumber: 3.1 Consensus size: 41
13291717 AGACTTATAC
13291727 CCTTATATGACATTTATAGATAAAACATTAACTTCTCATCT
1 CCTTATATGACATTTATAGATAAAACATTAACTTCTCATCT
* * ** * *
13291768 CC-T-T-TGACATTTATTTTTGGTGGAA-TTTAGACTTAT-A-C-
1 CCTTATATGACATTTA---TAGATAAAACATTA-ACTTCTCATCT
13291806 CCTTATATGACATTTATAGATAAAACATTAACTTCTCATCT
1 CCTTATATGACATTTATAGATAAAACATTAACTTCTCATCT
13291847 CCTTA
1 CCTTA
13291852 AGTTTTAGGA
Statistics
Matches: 61, Mismatches: 12, Indels: 22
0.64 0.13 0.23
Matches are distributed among these distances:
38 21 0.34
39 7 0.11
40 7 0.11
41 26 0.43
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (41 bp):
CCTTATATGACATTTATAGATAAAACATTAACTTCTCATCT
Found at i:13299542 original size:13 final size:13
Alignment explanation
Indices: 13299526--13299550 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13299516 TTACTCTATT
13299526 TTATTTATTTTAG
1 TTATTTATTTTAG
13299539 TTATTTATTTTA
1 TTATTTATTTTA
13299551 ATTGCTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TTATTTATTTTAG
Found at i:13315929 original size:18 final size:18
Alignment explanation
Indices: 13315906--13315940 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13315896 AAGTTAAACA
*
13315906 AATTAAGTTATTCGAGTT
1 AATTAAATTATTCGAGTT
*
13315924 AATTAAATTATTTGAGT
1 AATTAAATTATTCGAGT
13315941 CAACTCGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (18 bp):
AATTAAATTATTCGAGTT
Found at i:13316110 original size:29 final size:31
Alignment explanation
Indices: 13316078--13316139 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
13316068 ACATTTTTAT
*
13316078 TTTTCTCCC-AAAACTTTTACTCCTC-CCCA
1 TTTTCTCCCAAAAACTTTTACTCATCTCCCA
13316107 TTTTCTCCCAAAAACTTTTACTCATCTCCCA
1 TTTTCTCCCAAAAACTTTTACTCATCTCCCA
13316138 TT
1 TT
13316140 CCATCATCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 9 0.30
30 15 0.50
31 6 0.20
ACGTcount: A:0.23, C:0.37, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCTCCCAAAAACTTTTACTCATCTCCCA
Found at i:13316866 original size:16 final size:16
Alignment explanation
Indices: 13316845--13316879 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
13316835 GTGATGAAAG
13316845 TTAATAACAAATTTAA
1 TTAATAACAAATTTAA
13316861 TTAATAACAAATTTAA
1 TTAATAACAAATTTAA
13316877 TTA
1 TTA
13316880 CGATTGATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAATAACAAATTTAA
Found at i:13316905 original size:20 final size:20
Alignment explanation
Indices: 13316877--13316921 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
13316867 ACAAATTTAA
* *
13316877 TTACGATTGATGAGAATAAC
1 TTACAATTGATGACAATAAC
13316897 TTACAATTGATGACAATAAC
1 TTACAATTGATGACAATAAC
13316917 -TACAA
1 TTACAA
13316922 GGAGCCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (20 bp):
TTACAATTGATGACAATAAC
Found at i:13317487 original size:23 final size:23
Alignment explanation
Indices: 13317461--13317508 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
13317451 ACAAAACTGC
13317461 AATGCCTGTAGGGGCAAGGCAGA
1 AATGCCTGTAGGGGCAAGGCAGA
13317484 AATGCCTGTAGGGGCAAGGCAGA
1 AATGCCTGTAGGGGCAAGGCAGA
13317507 AA
1 AA
13317509 AGGCACATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.17, G:0.38, T:0.12
Consensus pattern (23 bp):
AATGCCTGTAGGGGCAAGGCAGA
Found at i:13322715 original size:78 final size:77
Alignment explanation
Indices: 13322606--13322756 Score: 241
Period size: 79 Copynumber: 1.9 Consensus size: 77
13322596 GCGGAAGGCA
* *
13322606 TAGGCATGTCTGATCAAATGCAACTCGCCCAAAAGG-TATGAGGTGCTTTTGTTGTCTAGTGCTA
1 TAGGCATGTCTGATCAAATGCAACTCGCCCAAAAGGATAAGAGGTGCTTTTGTTGTCTAGTGATA
13322670 AAGCACAAAACT
66 AAGCACAAAACT
*
13322682 TAGGCATGCATCTGATCAAATGCACCTCGCCCAAAAGGATAAGAGGTGCTTTTGTTGTCTAGTGA
1 TAGGCATG--TCTGATCAAATGCAACTCGCCCAAAAGGATAAGAGGTGCTTTTGTTGTCTAGTGA
*
13322747 TAAGGCACAA
64 TAAAGCACAA
13322757 GGCATAGGTG
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
76 8 0.12
78 27 0.40
79 33 0.49
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (77 bp):
TAGGCATGTCTGATCAAATGCAACTCGCCCAAAAGGATAAGAGGTGCTTTTGTTGTCTAGTGATA
AAGCACAAAACT
Found at i:13334196 original size:31 final size:32
Alignment explanation
Indices: 13334161--13334224 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
13334151 AATTACCAAC
* *
13334161 TTAAG-AAAAAGTGTGAAGTTTAAGTACTAAA
1 TTAAGAAAAAAGTGTCAAGTTCAAGTACTAAA
* *
13334192 TTAAGAAAAAATTGTCAAGTTCAAGTATTAAA
1 TTAAGAAAAAAGTGTCAAGTTCAAGTACTAAA
13334224 T
1 T
13334225 ATTATATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.48, C:0.05, G:0.16, T:0.31
Consensus pattern (32 bp):
TTAAGAAAAAAGTGTCAAGTTCAAGTACTAAA
Found at i:13339055 original size:22 final size:23
Alignment explanation
Indices: 13339019--13339068 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
13339009 TAACACTTTC
* *
13339019 ATATTTTTCATAATACATTAATA
1 ATATTTTTCAGAATAAATTAATA
13339042 ATATTTTT-AGAATAAATTAATA
1 ATATTTTTCAGAATAAATTAATA
*
13339064 GTATT
1 ATATT
13339069 CTTATATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (23 bp):
ATATTTTTCAGAATAAATTAATA
Found at i:13339912 original size:31 final size:30
Alignment explanation
Indices: 13339871--13339928 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
13339861 GTACAATTTT
* * *
13339871 AAAAAATATCAAGTTTAGATACCAAATTAA
1 AAAAAATATCAAATTCAAATACCAAATTAA
13339901 AAAAAATTATCAAATTCAAATACCAAAT
1 AAAAAA-TATCAAATTCAAATACCAAAT
13339929 ATTATATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 6 0.25
31 18 0.75
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.26
Consensus pattern (30 bp):
AAAAAATATCAAATTCAAATACCAAATTAA
Found at i:13343362 original size:18 final size:17
Alignment explanation
Indices: 13343339--13343372 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13343329 TTAGAATAAA
13343339 TTAATAGTATTTTTATAT
1 TTAATA-TATTTTTATAT
*
13343357 TTAATATTTTTTTATA
1 TTAATATATTTTTATA
13343373 ATCCTCTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
TTAATATATTTTTATAT
Found at i:13345062 original size:14 final size:14
Alignment explanation
Indices: 13345028--13345063 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
13345018 GAAATGAACA
*
13345028 TTAACTATCTTAGT
1 TTAACTTTCTTAGT
13345042 TTAACTTTCTTAGT
1 TTAACTTTCTTAGT
*
13345056 TTGACTTT
1 TTAACTTT
13345064 TGGATTGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.22, C:0.14, G:0.08, T:0.56
Consensus pattern (14 bp):
TTAACTTTCTTAGT
Found at i:13348848 original size:37 final size:37
Alignment explanation
Indices: 13348798--13348872 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
13348788 GAAATTTACA
13348798 GTACCACCTATGTTACTAGGCCTTAGATATGTCTTAT
1 GTACCACCTATGTTACTAGGCCTTAGATATGTCTTAT
13348835 GTACCACCTATGTTACTAGGCCTTAGATATGTCTTAT
1 GTACCACCTATGTTACTAGGCCTTAGATATGTCTTAT
13348872 G
1 G
13348873 CAAGTATGTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (37 bp):
GTACCACCTATGTTACTAGGCCTTAGATATGTCTTAT
Found at i:13350303 original size:16 final size:17
Alignment explanation
Indices: 13350282--13350315 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
13350272 GTTATATTTG
*
13350282 AAATAT-TATTTGGAAT
1 AAATATATATTTGAAAT
13350298 AAATATATATTTGAAAT
1 AAATATATATTTGAAAT
13350315 A
1 A
13350316 TTGTTTGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (17 bp):
AAATATATATTTGAAAT
Found at i:13350307 original size:29 final size:27
Alignment explanation
Indices: 13350274--13350332 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 27
13350264 GACTAAATGT
13350274 TATATTTGAAATATTATTTGGAATAAATA
1 TATATTTGAAATATTATTT-GAA-AAATA
*
13350303 TATATTTGAAATATTGTTTGAAAAATA
1 TATATTTGAAATATTATTTGAAAAATA
13350330 TAT
1 TAT
13350333 TAGACAACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 8 0.28
28 3 0.10
29 18 0.62
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (27 bp):
TATATTTGAAATATTATTTGAAAAATA
Found at i:13355703 original size:23 final size:23
Alignment explanation
Indices: 13355677--13355723 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
13355667 AAAGAGAGGA
*
13355677 AAATTAATGCAAAAATATCACAC
1 AAATTAATACAAAAATATCACAC
*
13355700 AAATTCATACAAAAATATCACAC
1 AAATTAATACAAAAATATCACAC
13355723 A
1 A
13355724 TGAGATTACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.57, C:0.19, G:0.02, T:0.21
Consensus pattern (23 bp):
AAATTAATACAAAAATATCACAC
Found at i:13358308 original size:12 final size:12
Alignment explanation
Indices: 13358291--13358324 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
13358281 GGAAGCGAGA
*
13358291 GTAGCGGTAGTG
1 GTAGCGGGAGTG
13358303 GTAGCGGGAGTG
1 GTAGCGGGAGTG
*
13358315 GAAGCGGGAG
1 GTAGCGGGAG
13358325 CGGGAGTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.21, C:0.09, G:0.56, T:0.15
Consensus pattern (12 bp):
GTAGCGGGAGTG
Found at i:13358328 original size:18 final size:18
Alignment explanation
Indices: 13358305--13358343 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
13358295 CGGTAGTGGT
*
13358305 AGCGGGAGTGGAAGCGGG
1 AGCGGGAGTGGAAGCGAG
*
13358323 AGCGGGAGTGGGAGCGAG
1 AGCGGGAGTGGAAGCGAG
13358341 AGC
1 AGC
13358344 AGTAGTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.13, G:0.59, T:0.05
Consensus pattern (18 bp):
AGCGGGAGTGGAAGCGAG
Found at i:13365008 original size:11 final size:10
Alignment explanation
Indices: 13364984--13365024 Score: 50
Period size: 9 Copynumber: 4.1 Consensus size: 10
13364974 TAAAGCAAAT
13364984 AAATTATT-A
1 AAATTATTAA
13364993 AAATTATTAAA
1 AAATTATT-AA
13365004 AAATTA-TAA
1 AAATTATTAA
13365013 AAATTAGTTAA
1 AAATTA-TTAA
13365024 A
1 A
13365025 CTTAATTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 16 0.57
10 1 0.04
11 11 0.39
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (10 bp):
AAATTATTAA
Found at i:13365009 original size:20 final size:21
Alignment explanation
Indices: 13364984--13365024 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
13364974 TAAAGCAAAT
*
13364984 AAATTATTAAAATTA-TTAAA
1 AAATTATAAAAATTAGTTAAA
13365004 AAATTATAAAAATTAGTTAAA
1 AAATTATAAAAATTAGTTAAA
13365025 CTTAATTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AAATTATAAAAATTAGTTAAA
Found at i:13368461 original size:43 final size:43
Alignment explanation
Indices: 13368400--13368486 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
13368390 CCAGAAATAG
13368400 AATCTTACTATGCATCTATGTAGCAATCATGCTCATTGTAAAA
1 AATCTTACTATGCATCTATGTAGCAATCATGCTCATTGTAAAA
13368443 AATCTTACTATGCATCTATGTAGCAATCATGCTCATTGTAAAA
1 AATCTTACTATGCATCTATGTAGCAATCATGCTCATTGTAAAA
13368486 A
1 A
13368487 TCAATTCATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.34
Consensus pattern (43 bp):
AATCTTACTATGCATCTATGTAGCAATCATGCTCATTGTAAAA
Found at i:13374900 original size:13 final size:13
Alignment explanation
Indices: 13374882--13374906 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13374872 TCACCACAAA
13374882 ACGTTTTAAAAAC
1 ACGTTTTAAAAAC
13374895 ACGTTTTAAAAA
1 ACGTTTTAAAAA
13374907 AATTGGTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (13 bp):
ACGTTTTAAAAAC
Found at i:13375700 original size:29 final size:29
Alignment explanation
Indices: 13375668--13376088 Score: 250
Period size: 29 Copynumber: 14.4 Consensus size: 29
13375658 AAAAACAAAA
13375668 TTTTGGAAAGTTCGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTCGGGGTAAAATGGTAAT
* * * *
13375697 TTTTGAAAAGTTCGAGAGCAAAATTGTAAT
1 TTTTGGAAAGTTCG-GGGTAAAATGGTAAT
* * *
13375727 TTTTGGAAAATTCGAGGTTAAAAATGG-GA-
1 TTTTGGAAAGTTCG-GGGT-AAAATGGTAAT
* *
13375756 TTTTGCAAGGTTCGAGGGTAAAATGGTAAT
1 TTTTGGAAAGTTCG-GGGTAAAATGGTAAT
13375786 TTCTTGTGAAA-TT--GGGTAAAAATGG-AA-
1 TT-TTG-GAAAGTTCGGGGT-AAAATGGTAAT
*
13375813 TTTTGGAAAGTTCGATGGTAAAATGGTAAT
1 TTTTGGAAAGTTCG-GGGTAAAATGGTAAT
*
13375843 TTTTAGTGAAA--TCGGGGTTAAAATGG-GA-
1 TTTT-G-GAAAGTTCGGGG-TAAAATGGTAAT
*
13375871 TTTTGGAAAGATCGGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTC-GGGGTAAAATGGTAAT
* *
13375901 TTTTGGTAAA-ATCGAGGTTAAAAATGG-AA-
1 TTTTGG-AAAGTTCG-GGGT-AAAATGGTAAT
* * *
13375930 TTTTGGAAAGTTCAAGGCTAAAATGATAAT
1 TTTTGGAAAGTTC-GGGGTAAAATGGTAAT
*
13375960 TTTTGGTGAAA-TT-AGGGTAAAAATGG-AA-
1 TTTT-G-GAAAGTTCGGGGT-AAAATGGTAAT
* * *
13375988 CTCTGGAAAGTTTAGGGGTAAAATGGTAAT
1 TTTTGGAAAG-TTCGGGGTAAAATGGTAAT
* ** *
13376018 TTCTAAAAAGTTTGGGGTAAAATGGTAAT
1 TTTTGGAAAGTTCGGGGTAAAATGGTAAT
* * *
13376047 TTTTAGAAAGTTTTGGGGTTAAAAT-ATAAT
1 TTTTGGAAAG-TTCGGGG-TAAAATGGTAAT
*
13376077 TTTTGGATAGTT
1 TTTTGGAAAGTT
13376089 TAGGGGTCTA
Statistics
Matches: 313, Mismatches: 41, Indels: 76
0.73 0.10 0.18
Matches are distributed among these distances:
25 4 0.01
26 13 0.04
27 4 0.01
28 54 0.17
29 103 0.33
30 94 0.30
31 31 0.10
32 10 0.03
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (29 bp):
TTTTGGAAAGTTCGGGGTAAAATGGTAAT
Found at i:13375726 original size:30 final size:30
Alignment explanation
Indices: 13375668--13375742 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
13375658 AAAAACAAAA
* * *
13375668 TTTTGGAAAGTTCG-GGGTAAAATGGTAAT
1 TTTTGAAAAGTTCGAGAGCAAAATGGTAAT
*
13375697 TTTTGAAAAGTTCGAGAGCAAAATTGTAAT
1 TTTTGAAAAGTTCGAGAGCAAAATGGTAAT
13375727 TTTTGGAAAA-TTCGAG
1 TTTT-GAAAAGTTCGAG
13375743 GTTAAAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 13 0.32
30 22 0.55
31 5 0.12
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (30 bp):
TTTTGAAAAGTTCGAGAGCAAAATGGTAAT
Found at i:13375726 original size:89 final size:89
Alignment explanation
Indices: 13375625--13375787 Score: 222
Period size: 89 Copynumber: 1.8 Consensus size: 89
13375615 ATTCCCGGGG
* *
13375625 GCAAAATAGTAATTTTTGGTGAAATT-GAGGTTAAAAAACAAAATTTTGGAAAGTTCG-GGGTAA
1 GCAAAATAGTAATTTTTGG-AAAATTCGAGGTT-AAAAACAAAATTTTGCAAAGTTCGAGGGTAA
13375688 AATGGTAATTTTTGAAAAGTTCGAGA
64 AATGGTAATTTTTGAAAAGTTCGAGA
* **** *
13375714 GCAAAATTGTAATTTTTGGAAAATTCGAGGTTAAAAATGGGATTTTGCAAGGTTCGAGGGTAAAA
1 GCAAAATAGTAATTTTTGGAAAATTCGAGGTTAAAAACAAAATTTTGCAAAGTTCGAGGGTAAAA
13375779 TGGTAATTT
66 TGGTAATTT
13375788 CTTGTGAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
88 23 0.36
89 41 0.64
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (89 bp):
GCAAAATAGTAATTTTTGGAAAATTCGAGGTTAAAAACAAAATTTTGCAAAGTTCGAGGGTAAAA
TGGTAATTTTTGAAAAGTTCGAGA
Found at i:13375891 original size:58 final size:57
Alignment explanation
Indices: 13375679--13376019 Score: 330
Period size: 58 Copynumber: 5.9 Consensus size: 57
13375669 TTTGGAAAGT
* * * *
13375679 TCGGGG-TAAAATGGTAATTTTTGAAAAGTTCGAGAGCAAAATTGTAATTTTTG-GAAAA
1 TCGGGGTTAAAATGG-AA-TTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTGTG-AAA
* * * *
13375737 TTCGAGGTTAAAAATGGGATTTTGCAAGGTTCGAGGGTAAAATGGTAATTTCTTGTGAAA
1 -TCGGGGTT-AAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTT-TTGTGAAA
* * *
13375797 T-TGGGTAAAAATGGAATTTTGGAAAGTTCGATGGTAAAATGGTAATTTTTAGTGAAA
1 TCGGGGTTAAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTT-GTGAAA
* * * *
13375854 TCGGGGTTAAAATGGGATTTTGGAAAGATCGGGGGTAAAATGGTAATTTTTGGTAAAA
1 TCGGGGTTAAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTT-GTGAAA
* * * *
13375912 TCGAGGTTAAAAATGGAATTTTGGAAAGTTCAAGGCTAAAATGATAATTTTTGGTGAAA
1 TCGGGGTT-AAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTT-GTGAAA
** * * * *
13375971 TTAGGGTAAAAATGGAACTCTGGAAAGTT-TAGGGGTAAAATGGTAATTT
1 TCGGGGTTAAAATGGAATTTTGGAAAGTTCGA-GGGTAAAATGGTAATTT
13376020 CTAAAAAGTT
Statistics
Matches: 235, Mismatches: 39, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
56 2 0.01
57 45 0.19
58 92 0.39
59 80 0.34
60 8 0.03
61 8 0.03
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.33
Consensus pattern (57 bp):
TCGGGGTTAAAATGGAATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTGTGAAA
Found at i:13375954 original size:117 final size:114
Alignment explanation
Indices: 13375682--13376021 Score: 357
Period size: 117 Copynumber: 2.9 Consensus size: 114
13375672 GGAAAGTTCG
* * * *
13375682 GGGT-AAAATGGTAATTTTTGAAAAGTTCGAGAGC-AAAATTGTAATTTTTG-GAAAATTCGAGG
1 GGGTAAAAATGG-AA-TTTTGGAAAGTTCAAG-GCTAAAATGGTAATTTTTGTG-AAA-TCGGGG
* * * * *
13375744 TTAAAAATGGGATTTTGCAAGGTTCGAGGGTAAAATGGTAATTTCTTGTGAAATT
61 TT-AAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTCTTGTAAAATC
*
13375799 GGGTAAAAATGGAATTTTGGAAAGTTCGATGG-TAAAATGGTAATTTTTAGTGAAATCGGGGTTA
1 GGGTAAAAATGGAATTTTGGAAAGTTC-AAGGCTAAAATGGTAATTTTT-GTGAAATCGGGGTTA
*
13375863 AAATGGGATTTTGGAAAGATCGGGGGTAAAATGGTAATTT-TTGGTAAAATC
64 AAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTCTT-GTAAAATC
* ** *
13375914 GAGGTTAAAAATGGAATTTTGGAAAGTTCAAGGCTAAAATGATAATTTTTGGTGAAATTAGGGTA
1 G-GG-TAAAAATGGAATTTTGGAAAGTTCAAGGCTAAAATGGTAATTTTT-GTGAAATCGGGGTT
* * * **
13375979 AAAATGGAACTCTGGAAAGTTTAGGGGTAAAATGGTAATTTCT
63 AAAATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTCT
13376022 AAAAAGTTTG
Statistics
Matches: 190, Mismatches: 23, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
114 2 0.01
115 44 0.23
116 39 0.21
117 96 0.51
118 9 0.05
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.33
Consensus pattern (114 bp):
GGGTAAAAATGGAATTTTGGAAAGTTCAAGGCTAAAATGGTAATTTTTGTGAAATCGGGGTTAAA
ATGGGATTTTGGAAAGTTCGGGGGTAAAATGGTAATTTCTTGTAAAATC
Found at i:13376077 original size:30 final size:30
Alignment explanation
Indices: 13375993--13376095 Score: 129
Period size: 30 Copynumber: 3.5 Consensus size: 30
13375983 TGGAACTCTG
*
13375993 GAAAGTTTAGGGGTAAAATGGTAATTTCTA
1 GAAAGTTTAGGGGTAAAATGGTAATTTTTA
*
13376023 AAAAGTTT-GGGGTAAAATGGTAATTTTTA
1 GAAAGTTTAGGGGTAAAATGGTAATTTTTA
* * *
13376052 GAAAGTTTTGGGGTTAAAAT-ATAATTTTTG
1 GAAAGTTTAGGGG-TAAAATGGTAATTTTTA
*
13376082 GATAGTTTAGGGGT
1 GAAAGTTTAGGGGT
13376096 CTATAAAGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
29 28 0.44
30 30 0.47
31 6 0.09
ACGTcount: A:0.34, C:0.01, G:0.27, T:0.38
Consensus pattern (30 bp):
GAAAGTTTAGGGGTAAAATGGTAATTTTTA
Found at i:13377223 original size:18 final size:19
Alignment explanation
Indices: 13377188--13377239 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 19
13377178 TTTAATAAAT
13377188 AATATTTACTTATTATTAA
1 AATATTTACTTATTATTAA
*
13377207 AATATTTCTTCTTATTATTAA
1 AATA-TT-TACTTATTATTAA
*
13377228 AACATTTA-TTAT
1 AATATTTACTTAT
13377240 AATTGTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 4 0.14
19 5 0.18
20 4 0.14
21 15 0.54
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (19 bp):
AATATTTACTTATTATTAA
Found at i:13378012 original size:17 final size:18
Alignment explanation
Indices: 13377986--13378024 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
13377976 ACATTTAATT
*
13377986 TTTATTTTAAATTTAAA-
1 TTTATATTAAATTTAAAG
13378003 TTTATATTAAATTTAAAG
1 TTTATATTAAATTTAAAG
13378021 TTTA
1 TTTA
13378025 GAAAAAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTATATTAAATTTAAAG
Found at i:13378059 original size:16 final size:16
Alignment explanation
Indices: 13377993--13378069 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 16
13377983 ATTTTTATTT
* *
13377993 TAAATTTAAATTTATAT
1 TAAATTT-AATTTAAAA
13378010 TAAATTTAAAGTTTAGAAA
1 TAAATTT-AA-TTTA-AAA
**
13378029 -AAACTTTAACCTAAAA
1 TAAA-TTTAATTTAAAA
13378045 TAAATTTAATTTAAAA
1 TAAATTTAATTTAAAA
*
13378061 CAAATTTAA
1 TAAATTTAA
13378070 ACTCTGTTGG
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
16 21 0.43
17 15 0.31
18 9 0.18
19 4 0.08
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (16 bp):
TAAATTTAATTTAAAA
Found at i:13378147 original size:20 final size:20
Alignment explanation
Indices: 13378122--13378186 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
13378112 CATCATAATT
13378122 AAATTAATAATGCAAAACAC
1 AAATTAATAATGCAAAACAC
* **
13378142 AAATTAA-ACAT-CATAATTC
1 AAATTAATA-ATGCAAAACAC
13378161 -AATTAATAATGCAAAACAC
1 AAATTAATAATGCAAAACAC
13378180 AAATTAA
1 AAATTAA
13378187 ATTTAAAAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 8 0.23
19 12 0.34
20 15 0.43
ACGTcount: A:0.58, C:0.14, G:0.03, T:0.25
Consensus pattern (20 bp):
AAATTAATAATGCAAAACAC
Found at i:13378155 original size:38 final size:38
Alignment explanation
Indices: 13378112--13378187 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
13378102 CAACCATCTT
13378112 CATCATAATTAAATTAATAATGCAAAACACAAATTAAA
1 CATCATAATTAAATTAATAATGCAAAACACAAATTAAA
*
13378150 CATCATAATTCAATTAATAATGCAAAACACAAATTAAA
1 CATCATAATTAAATTAATAATGCAAAACACAAATTAAA
13378188 TTTAAAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.26
Consensus pattern (38 bp):
CATCATAATTAAATTAATAATGCAAAACACAAATTAAA
Found at i:13378429 original size:21 final size:21
Alignment explanation
Indices: 13378405--13378444 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
13378395 ATAAAATAAA
* *
13378405 ACTAAGTTAAAATCCTAAATT
1 ACTAAATTAAAACCCTAAATT
*
13378426 ACTAAATTGAAACCCTAAA
1 ACTAAATTAAAACCCTAAA
13378445 ACGGCTTTAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.17, G:0.05, T:0.28
Consensus pattern (21 bp):
ACTAAATTAAAACCCTAAATT
Found at i:13382325 original size:101 final size:102
Alignment explanation
Indices: 13382137--13382344 Score: 289
Period size: 101 Copynumber: 2.0 Consensus size: 102
13382127 TCTTCCTCGG
13382137 TGGTTTTTGCCAACAATCGCTAAATCCCCTTGGGACTACTCACCCATGCATATTTGCAGCAGTAA
1 TGGTTTTTGCCAACAATCGCTAAATCCCCTTGGGACTACTCACCCATGCATATTTGCAGCAGTAA
** *
13382202 CCCAAAAACTGGTAATGAAGAACCA-CTG-GAAAAAGA
66 CCCAAAAACCAGTAATGAAGAACCATC-GAAAAAAAGA
* * *
13382238 TGGTTTTTGCCAACAATCGCTACATCCCCTTGGGACTAC-CTATCCATGCATA-TTGCAGCGGTA
1 TGGTTTTTGCCAACAATCGCTAAATCCCCTTGGGACTACTC-ACCCATGCATATTTGCAGCAGTA
* *
13382301 ACCCAAAAACCCAGTTATGCAGAACCATCGAAAAAAAGA
65 ACCCAAAAA-CCAGTAATGAAGAACCATCGAAAAAAAGA
13382340 TGGTT
1 TGGTT
13382345 ACAACTCAGC
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
100 20 0.21
101 62 0.65
102 13 0.14
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (102 bp):
TGGTTTTTGCCAACAATCGCTAAATCCCCTTGGGACTACTCACCCATGCATATTTGCAGCAGTAA
CCCAAAAACCAGTAATGAAGAACCATCGAAAAAAAGA
Found at i:13394940 original size:15 final size:16
Alignment explanation
Indices: 13394917--13394949 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
13394907 AAATTATAAG
*
13394917 AATATAATATATATTT
1 AATATAATACATATTT
13394933 AATA-AATACATATTT
1 AATATAATACATATTT
13394948 AA
1 AA
13394950 ATATGATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
AATATAATACATATTT
Found at i:13397046 original size:5 final size:5
Alignment explanation
Indices: 13397038--13397069 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
13397028 GAAAAAGAAA
13397038 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AA
1 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AA
13397070 ATAATTACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (5 bp):
AAGGG
Found at i:13397993 original size:18 final size:19
Alignment explanation
Indices: 13397970--13398008 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
13397960 TTACATATTT
13397970 AATTTTAATTAATTA-TAA
1 AATTTTAATTAATTAGTAA
* *
13397988 AATTTTATTTATTTAGTAA
1 AATTTTAATTAATTAGTAA
13398007 AA
1 AA
13398009 AAATTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
AATTTTAATTAATTAGTAA
Found at i:13398178 original size:20 final size:21
Alignment explanation
Indices: 13398144--13398183 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
13398134 TTAATTTCAC
13398144 ATTAATATATTATTA-TATTA
1 ATTAATATATTATTAGTATTA
13398164 ATTAATAT-TTAATTAGTATT
1 ATTAATATATT-ATTAGTATT
13398184 GCTTTTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 12 0.67
21 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
ATTAATATATTATTAGTATTA
Found at i:13399778 original size:29 final size:31
Alignment explanation
Indices: 13399746--13399820 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
13399736 TTTAATCCTT
* * *
13399746 AATTTTACAAAATTT-ATTATTTTAA-TTCG
1 AATTTTACAAAATTTAATAAATTTAACTTCA
* *
13399775 AATTCTAAAAAATTTAATAAATTTAACTTCA
1 AATTTTACAAAATTTAATAAATTTAACTTCA
*
13399806 AACTTTACAAAATTT
1 AATTTTACAAAATTT
13399821 TTCAATAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
29 13 0.36
30 8 0.22
31 15 0.42
ACGTcount: A:0.45, C:0.09, G:0.01, T:0.44
Consensus pattern (31 bp):
AATTTTACAAAATTTAATAAATTTAACTTCA
Found at i:13400777 original size:14 final size:14
Alignment explanation
Indices: 13400758--13400801 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
13400748 TTCAAGGTCG
*
13400758 AGAGTCTAGGGTTC
1 AGAGTCTAAGGTTC
13400772 AGAGTCTAAGGTTC
1 AGAGTCTAAGGTTC
*
13400786 -GAGGTCTAAAGTTC
1 AGA-GTCTAAGGTTC
13400800 AG
1 AG
13400802 GGCTTAGGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 2 0.08
14 23 0.88
15 1 0.04
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (14 bp):
AGAGTCTAAGGTTC
Found at i:13402935 original size:6 final size:6
Alignment explanation
Indices: 13402924--13402958 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
13402914 AAATACCTAA
13402924 GCCTGG GCCTGG GCCTGG GCCTGG GCCTGG GCCTG
1 GCCTGG GCCTGG GCCTGG GCCTGG GCCTGG GCCTG
13402959 ACCAACCTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.49, T:0.17
Consensus pattern (6 bp):
GCCTGG
Found at i:13404171 original size:4 final size:4
Alignment explanation
Indices: 13404164--13404191 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
13404154 ATGCATACAT
13404164 ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG
13404192 GTGCCGGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:13407753 original size:20 final size:20
Alignment explanation
Indices: 13407710--13407753 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
13407700 AAATCTTCAT
**
13407710 ACTTCTACCAATACAAGTGG
1 ACTTCTACCAATACAAGTCC
* *
13407730 ACTTCTACCGATGCAAGTCC
1 ACTTCTACCAATACAAGTCC
13407750 ACTT
1 ACTT
13407754 GTATCGATAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (20 bp):
ACTTCTACCAATACAAGTCC
Found at i:13408047 original size:16 final size:16
Alignment explanation
Indices: 13408026--13408060 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
13408016 TTGCTTAAGG
13408026 TTTTTGGGTAGAAAAC
1 TTTTTGGGTAGAAAAC
*
13408042 TTTTTGGTTAGAAAAC
1 TTTTTGGGTAGAAAAC
13408058 TTT
1 TTT
13408061 AAGTGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.20, T:0.46
Consensus pattern (16 bp):
TTTTTGGGTAGAAAAC
Found at i:13409965 original size:8 final size:8
Alignment explanation
Indices: 13409947--13409998 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
13409937 TATAAAACGA
13409947 ATATGAAAT
1 ATAT-AAAT
13409956 ATAT-AA-
1 ATATAAAT
13409962 ATATAAAT
1 ATATAAAT
*
13409970 ATATATAT
1 ATATAAAT
*
13409978 ATATATAT
1 ATATAAAT
*
13409986 ATATATAT
1 ATATAAAT
13409994 ATATA
1 ATATA
13409999 TTAAACCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
6 4 0.10
7 4 0.10
8 28 0.70
9 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (8 bp):
ATATAAAT
Done.