Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 37 of 182
Found at i:14056605 original size:29 final size:29
Alignment explanation
Indices: 14056532--14056756 Score: 190
Period size: 29 Copynumber: 7.7 Consensus size: 29
14056522 TAAACTGCCA
* * *
14056532 AAAAATTATATCTTGACCCTCAAACCTCTCT
1 AAAAATTACATTTTGACCCT-AAAACT-TCT
14056563 -AAAATTACATTTTTGACCCTAAAACTTCT
1 AAAAATTACA-TTTTGACCCTAAAACTTCT
* **
14056592 AAAAATTACATTTTTACCCTCGAACTT-T
1 AAAAATTACATTTTGACCCTAAAACTTCT
** *
14056620 CAAAAATTACATTTTTGA-CCTCGAACTTCC
1 -AAAAATTACA-TTTTGACCCTAAAACTTCT
* * *
14056650 AAAAATTACATTTTTGACCTTGAAACTTTT
1 AAAAATTACA-TTTTGACCCTAAAACTTCT
* * *
14056680 GAAAATTCCATTTTTACCCCT-AAACTTCT
1 AAAAATTACATTTTGA-CCCTAAAACTTCT
* *
14056709 AAAAATTCCATTTTAACCCTAAAACTTCT
1 AAAAATTACATTTTGACCCTAAAACTTCT
14056738 AAAAATTACCATTTT-ACCC
1 AAAAATTA-CATTTTGACCC
14056757 CTGAATGTCA
Statistics
Matches: 164, Mismatches: 21, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
28 5 0.03
29 99 0.60
30 51 0.31
31 9 0.05
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (29 bp):
AAAAATTACATTTTGACCCTAAAACTTCT
Found at i:14056677 original size:59 final size:58
Alignment explanation
Indices: 14056563--14056752 Score: 197
Period size: 59 Copynumber: 3.2 Consensus size: 58
14056553 AAACCTCTCT
* *
14056563 AAAATTACATTTTTGACCCTAAAACTTCTAAAAATTACATTTTTACCCTCG-AACTTTCA
1 AAAATTACATTTTTGA-CCTCAAACTTCTAAAAATTACATTTTTA-CCTTGAAACTTTCA
* * **
14056622 AAAATTACATTTTTGACCTCGAACTTCCAAAAATTACATTTTTGACCTTGAAACTTTTG
1 AAAATTACATTTTTGACCTCAAACTTCTAAAAATTACATTTTT-ACCTTGAAACTTTCA
* * * * * *
14056681 AAAATTCCATTTTT-ACCCCTAAACTTCTAAAAATTCCATTTTAACCCTAAAAC-TTCTA
1 AAAATTACATTTTTGACCTC-AAACTTCTAAAAATTACATTTTTACCTTGAAACTTTC-A
14056739 AAAATTACCATTTT
1 AAAATTA-CATTTT
14056753 ACCCCTGAAT
Statistics
Matches: 109, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
57 2 0.02
58 46 0.42
59 61 0.56
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.38
Consensus pattern (58 bp):
AAAATTACATTTTTGACCTCAAACTTCTAAAAATTACATTTTTACCTTGAAACTTTCA
Found at i:14056735 original size:88 final size:88
Alignment explanation
Indices: 14056563--14056752 Score: 224
Period size: 88 Copynumber: 2.1 Consensus size: 88
14056553 AAACCTCTCT
*
14056563 AAAATTACATTTTTGACCCTAAAACTTCTAAAAATTACATTTTTACCCTCGAACTTTCAAAAATT
1 AAAATTACATTTTTGACCCTAAAACTTCTAAAAATTACATTTTTACCCTCAAACTTTCAAAAATT
* **
14056628 ACATTTTTGACCTCGAACTTCCA
66 ACATTTTTAACCTAAAACTTCCA
* * * * *
14056651 AAAATTACATTTTTGACCTTGAAACTTTTGAAAATTCCATTTTTACCC-CTAAAC-TTCTAAAAA
1 AAAATTACATTTTTGACCCTAAAACTTCTAAAAATTACATTTTTACCCTC-AAACTTTC-AAAAA
* *
14056714 TTCCA-TTTTAACCCTAAAACTTCTA
64 TTACATTTTTAA-CCTAAAACTTCCA
14056739 AAAATTACCATTTT
1 AAAATTA-CATTTT
14056753 ACCCCTGAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
87 9 0.10
88 72 0.83
89 6 0.07
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.38
Consensus pattern (88 bp):
AAAATTACATTTTTGACCCTAAAACTTCTAAAAATTACATTTTTACCCTCAAACTTTCAAAAATT
ACATTTTTAACCTAAAACTTCCA
Found at i:14056780 original size:28 final size:28
Alignment explanation
Indices: 14056579--14056779 Score: 135
Period size: 29 Copynumber: 6.9 Consensus size: 28
14056569 ACATTTTTGA
*
14056579 CCCTAAAACTTCTAAAAATTACATTTTTA-
1 CCCT-AAACTTCTAAAAATTCCA-TTTTAC
* *
14056608 CCCTCGAACTT-TCAAAAATTACATTTTTGAC
1 CCCT-AAACTTCT-AAAAATTCCA-TTTT-AC
* * * *
14056639 CTC-GAACTTCCAAAAATTACATTTTTGA-
1 CCCTAAACTTCTAAAAATTCCA-TTTT-AC
* * *
14056667 CCTTGAAACTTTTGAAAATTCCATTTTTAC
1 CCCT-AAACTTCTAAAAATTCCA-TTTTAC
*
14056697 CCCTAAACTTCTAAAAATTCCATTTTAA
1 CCCTAAACTTCTAAAAATTCCATTTTAC
14056725 CCCTAAAACTTCTAAAAATTACCATTTTAC
1 CCCT-AAACTTCTAAAAATT-CCATTTTAC
*
14056755 CCCTGAA-TGTC-AAAAATTCCATTTT
1 CCCTAAACT-TCTAAAAATTCCATTTT
14056780 TGATTCCAAT
Statistics
Matches: 145, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
27 7 0.05
28 19 0.13
29 83 0.57
30 34 0.23
31 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.37
Consensus pattern (28 bp):
CCCTAAACTTCTAAAAATTCCATTTTAC
Found at i:14058398 original size:7 final size:7
Alignment explanation
Indices: 14058386--14058429 Score: 88
Period size: 7 Copynumber: 6.3 Consensus size: 7
14058376 TTTAATCTTT
14058386 TTTTAAA
1 TTTTAAA
14058393 TTTTAAA
1 TTTTAAA
14058400 TTTTAAA
1 TTTTAAA
14058407 TTTTAAA
1 TTTTAAA
14058414 TTTTAAA
1 TTTTAAA
14058421 TTTTAAA
1 TTTTAAA
14058428 TT
1 TT
14058430 ACCCTTAACG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTTAAA
Found at i:14065232 original size:26 final size:25
Alignment explanation
Indices: 14065197--14065255 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
14065187 CTAGATATCG
* *
14065197 TATAAAAAAATTTTAATAAATAAAAA
1 TATATAAAAATATTAA-AAATAAAAA
* *
14065223 TATATAAAAATATTAAATATTAAAA
1 TATATAAAAATATTAAAAATAAAAA
14065248 TAATATAA
1 T-ATATAA
14065256 TATAAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (25 bp):
TATATAAAAATATTAAAAATAAAAA
Found at i:14065257 original size:16 final size:15
Alignment explanation
Indices: 14065214--14065261 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
14065204 AAATTTTAAT
*
14065214 AAATAAAAATATATAA
1 AAATAATAA-ATATAA
* *
14065230 AAATATTAAATATTA
1 AAATAATAAATATAA
14065245 AAATAATATAATATAA
1 AAATAATA-AATATAA
14065261 A
1 A
14065262 TATTTTTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 12 0.46
16 14 0.54
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATAATAAATATAA
Found at i:14072400 original size:11 final size:11
Alignment explanation
Indices: 14072383--14072412 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14072373 GGTTCAATTG
14072383 ATATTATTGCT
1 ATATTATTGCT
*
14072394 CTATTATTGCT
1 ATATTATTGCT
14072405 ATATTATT
1 ATATTATT
14072413 TAACTAAAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.57
Consensus pattern (11 bp):
ATATTATTGCT
Found at i:14081119 original size:19 final size:17
Alignment explanation
Indices: 14081083--14081143 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
14081073 CAGCTGCTGC
*
14081083 AAAGAAAAATAAAGGAAA
1 AAAG-AAAAGAAAGGAAA
14081101 TAAAGAAAAGAAAGAGAAA
1 -AAAGAAAAGAAAG-GAAA
* *
14081120 AAAGGAAA-AAGGGAGAA
1 AAAGAAAAGAAAGGA-AA
14081137 AAAGAAA
1 AAAGAAA
14081144 GAAGAAGAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
16 2 0.06
17 11 0.31
18 15 0.42
19 8 0.22
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (17 bp):
AAAGAAAAGAAAGGAAA
Found at i:14083120 original size:16 final size:16
Alignment explanation
Indices: 14083099--14083156 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
14083089 TATATTCTCC
14083099 ATCCTTCTAATTTTCT
1 ATCCTTCTAATTTTCT
*
14083115 ATCCTT-TCAATTCTCT
1 ATCCTTCT-AATTTTCT
* *
14083131 ATTCTTCCAATTTTCT
1 ATCCTTCTAATTTTCT
*
14083147 TTCCATTCTA
1 ATCC-TTCTA
14083157 CCAAGTTAAG
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
15 1 0.03
16 27 0.84
17 4 0.12
ACGTcount: A:0.19, C:0.28, G:0.00, T:0.53
Consensus pattern (16 bp):
ATCCTTCTAATTTTCT
Found at i:14092533 original size:58 final size:58
Alignment explanation
Indices: 14092456--14092569 Score: 201
Period size: 58 Copynumber: 2.0 Consensus size: 58
14092446 CACCCCAGCT
*
14092456 GCAAACTCATAGGACCAGAACTATTATCAGATTGGAGAGAAGATGAACGATTCAAATG
1 GCAAACTCATAGCACCAGAACTATTATCAGATTGGAGAGAAGATGAACGATTCAAATG
* *
14092514 GCAAACTCATAGCATCAGAACTATTATCAGATTGGAGAGAAGTTGAACGATTCAAA
1 GCAAACTCATAGCACCAGAACTATTATCAGATTGGAGAGAAGATGAACGATTCAAA
14092570 CGGGAACGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (58 bp):
GCAAACTCATAGCACCAGAACTATTATCAGATTGGAGAGAAGATGAACGATTCAAATG
Found at i:14092578 original size:15 final size:15
Alignment explanation
Indices: 14092558--14092587 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14092548 GAGAGAAGTT
14092558 GAACGATTCAAACGG
1 GAACGATTCAAACGG
14092573 GAACGATTCAAACGG
1 GAACGATTCAAACGG
14092588 CAAACTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.27, T:0.13
Consensus pattern (15 bp):
GAACGATTCAAACGG
Found at i:14092619 original size:73 final size:73
Alignment explanation
Indices: 14092500--14092642 Score: 259
Period size: 73 Copynumber: 2.0 Consensus size: 73
14092490 GAGAGAAGAT
* * *
14092500 GAACGATTCAAATGGCAAACTCATAGCATCAGAACTATTATCAGATTGGAGAGAAGTTGAACGAT
1 GAACGATTCAAACGGCAAACTCATAGCATCAGAACTATTATCAGATTGGAGAGAAGATAAACGAT
14092565 TCAAACGG
66 TCAAACGG
14092573 GAACGATTCAAACGGCAAACTCATAGCATCAGAACTATTATCAGATTGGAGAGAAGATAAACGAT
1 GAACGATTCAAACGGCAAACTCATAGCATCAGAACTATTATCAGATTGGAGAGAAGATAAACGAT
14092638 TCAAA
66 TCAAA
14092643 TGGATATTCT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (73 bp):
GAACGATTCAAACGGCAAACTCATAGCATCAGAACTATTATCAGATTGGAGAGAAGATAAACGAT
TCAAACGG
Found at i:14096345 original size:17 final size:17
Alignment explanation
Indices: 14096315--14096348 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14096305 TTTTTTTAAA
14096315 TTAAAAATATAAATTAT
1 TTAAAAATATAAATTAT
14096332 TTAAATAATA-AAATTAT
1 TTAAA-AATATAAATTAT
14096349 AATTTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAAAAATATAAATTAT
Found at i:14106580 original size:5 final size:5
Alignment explanation
Indices: 14106570--14106602 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
14106560 AGTTCAGATT
14106570 TTGGG TTGGG TTGGG TTGGG TTGGG TTGGG TTG
1 TTGGG TTGGG TTGGG TTGGG TTGGG TTGGG TTG
14106603 TGCTTGGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (5 bp):
TTGGG
Found at i:14106882 original size:39 final size:39
Alignment explanation
Indices: 14106838--14106917 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
14106828 ATCAGCACTA
14106838 AATATTGCAATTTACGAATTTGACAATCACATTTTCAGC
1 AATATTGCAATTTACGAATTTGACAATCACATTTTCAGC
14106877 AATATTGCAATTTACGAATTTGACAATCACATTTTCAGC
1 AATATTGCAATTTACGAATTTGACAATCACATTTTCAGC
14106916 AA
1 AA
14106918 GAGTATTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (39 bp):
AATATTGCAATTTACGAATTTGACAATCACATTTTCAGC
Found at i:14114404 original size:13 final size:15
Alignment explanation
Indices: 14114370--14114406 Score: 51
Period size: 13 Copynumber: 2.5 Consensus size: 15
14114360 TGATTATCAC
14114370 TTAATTAATATTAGAG
1 TTAATT-ATATTAGAG
14114386 TTAATTATATTA-A-
1 TTAATTATATTAGAG
14114399 TTAATTAT
1 TTAATTAT
14114407 TATTTTGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.38
14 1 0.05
15 6 0.29
16 6 0.29
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TTAATTATATTAGAG
Found at i:14121049 original size:29 final size:29
Alignment explanation
Indices: 14120996--14121066 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
14120986 AAAATTTTTG
* **
14120996 AAAATTTTAAAAACTTCTAAAAATACATA
1 AAAATTTTAAAAAATAATAAAAATACATA
* * *
14121025 GAAATTTTAAAAAATAATAACAATATATA
1 AAAATTTTAAAAAATAATAAAAATACATA
*
14121054 AAAATTTCAAAAA
1 AAAATTTTAAAAA
14121067 TTGATAAAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.62, C:0.07, G:0.01, T:0.30
Consensus pattern (29 bp):
AAAATTTTAAAAAATAATAAAAATACATA
Found at i:14135245 original size:24 final size:24
Alignment explanation
Indices: 14135211--14135258 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
14135201 ATGGATGTTC
* *
14135211 AACCTTTCATCTCCTTTGACCTTT
1 AACCTTCCATCTCCTTTAACCTTT
*
14135235 AACCTTCCATCTTCTTTAACCTTT
1 AACCTTCCATCTCCTTTAACCTTT
14135259 TATATTTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.02, T:0.46
Consensus pattern (24 bp):
AACCTTCCATCTCCTTTAACCTTT
Found at i:14146037 original size:19 final size:20
Alignment explanation
Indices: 14145999--14146039 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
14145989 TAGATAATAT
14145999 AAATACATTTATATGTTGTAAA
1 AAATACATTTATA--TTGTAAA
14146021 AAATACATTTATA-TGTAAA
1 AAATACATTTATATTGTAAA
14146040 TGTAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
22 13 0.68
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (20 bp):
AAATACATTTATATTGTAAA
Found at i:14147269 original size:14 final size:15
Alignment explanation
Indices: 14147244--14147276 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14147234 ATGATTTTGG
*
14147244 TTAAATTAATAAAGT
1 TTAAATTAATAAAGA
14147259 TTAAA-TAATAAAGA
1 TTAAATTAATAAAGA
14147273 TTAA
1 TTAA
14147277 GATGTTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (15 bp):
TTAAATTAATAAAGA
Found at i:14151081 original size:23 final size:24
Alignment explanation
Indices: 14151055--14151112 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
14151045 TAATGTTCAT
*
14151055 GAACATGTTCATTTAAC-T-TAATC
1 GAACATGTTCA-TGAACATATAATC
*
14151078 GAACATGTTCATGAACATATAATT
1 GAACATGTTCATGAACATATAATC
14151102 GAACATGTTCA
1 GAACATGTTCA
14151113 CGAATAATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 4 0.13
23 12 0.39
24 15 0.48
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (24 bp):
GAACATGTTCATGAACATATAATC
Found at i:14154948 original size:29 final size:27
Alignment explanation
Indices: 14154884--14154948 Score: 67
Period size: 31 Copynumber: 2.3 Consensus size: 27
14154874 ATTTCTTGTG
* *
14154884 TATAATTGCACCAAATTAAAGTTTATG
1 TATAATTGCACCAAATTAAAGTTCATA
*
14154911 TATCAAATTGCACATTAAATTAAAGTTCATA
1 TAT--AATTGCAC--CAAATTAAAGTTCATA
14154942 TATAATT
1 TATAATT
14154949 TTGAGTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 3 0.10
29 12 0.39
31 16 0.52
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (27 bp):
TATAATTGCACCAAATTAAAGTTCATA
Found at i:14160594 original size:21 final size:23
Alignment explanation
Indices: 14160561--14160608 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
14160551 TGATGAGAAT
*
14160561 AAAATCTCTTTTTC-CTTATTTA
1 AAAATATCTTTTTCTCTTATTTA
*
14160583 AAAATATC-TTTTCTTTTATTTA
1 AAAATATCTTTTTCTCTTATTTA
14160605 AAAA
1 AAAA
14160609 GGAATAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.52
Consensus pattern (23 bp):
AAAATATCTTTTTCTCTTATTTA
Found at i:14177673 original size:19 final size:19
Alignment explanation
Indices: 14177651--14177695 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14177641 TTTTATTAGG
14177651 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
14177670 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
14177689 ATTTAAT
1 ATTTAAT
14177696 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:14177718 original size:14 final size:14
Alignment explanation
Indices: 14177695--14177724 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14177685 TTGTATTTAA
*
14177695 TTTATGTTTATCTT
1 TTTATATTTATCTT
14177709 TTTATATTTATCTT
1 TTTATATTTATCTT
14177723 TT
1 TT
14177725 AGAATTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTATATTTATCTT
Found at i:14179910 original size:29 final size:30
Alignment explanation
Indices: 14179878--14180026 Score: 104
Period size: 28 Copynumber: 5.2 Consensus size: 30
14179868 CAAAATTAGG
*
14179878 ATTTT-GTAAAGTTCAAGGGTAAAATGGTA
1 ATTTTGGTAAAATTCAAGGGTAAAATGGTA
*
14179907 ATTTTTGGTAAAA-TCGA-GGTCAAAAATGG-A
1 A-TTTTGGTAAAATTCAAGGGT--AAAATGGTA
* * *
14179937 ATTTTAGG--AAGTTTAGGGGTAAAATGGTA
1 ATTTT-GGTAAAATTCAAGGGTAAAATGGTA
14179966 ATTTTGGTAAAATT--AGGGTTAAAATGG-A
1 ATTTTGGTAAAATTCAAGGG-TAAAATGGTA
***
14179994 ATTTTGG-AAAATTTGGGGGTAAAAT-GTA
1 ATTTTGGTAAAATTCAAGGGTAAAATGGTA
14180022 ATTTT
1 ATTTT
14180027 TAGAAAGTTT
Statistics
Matches: 97, Mismatches: 9, Indels: 29
0.72 0.07 0.21
Matches are distributed among these distances:
27 7 0.07
28 34 0.35
29 26 0.27
30 18 0.19
31 12 0.12
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.36
Consensus pattern (30 bp):
ATTTTGGTAAAATTCAAGGGTAAAATGGTA
Found at i:14179984 original size:28 final size:27
Alignment explanation
Indices: 14179893--14180026 Score: 105
Period size: 28 Copynumber: 4.7 Consensus size: 27
14179883 GTAAAGTTCA
14179893 AGGGTAAAATGGTAATTTTTGGTAAAA-T
1 AGGGTAAAATGGTAA-TTTTGG-AAAATT
* **
14179921 CGAGGTCAAAAATGG-AATTTTAGGAAGTTT
1 AG-GGT--AAAATGGTAATTTT-GGAAAATT
14179951 AGGGGTAAAATGGTAATTTTGGTAAAATT
1 A-GGGTAAAATGGTAATTTTGG-AAAATT
14179980 AGGGTTAAAATGG-AATTTTGGAAAATTT
1 AGGG-TAAAATGGTAATTTTGGAAAA-TT
*
14180008 GGGGGTAAAAT-GTAATTTT
1 -AGGGTAAAATGGTAATTTT
14180027 TAGAAAGTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 24
0.74 0.06 0.20
Matches are distributed among these distances:
27 5 0.06
28 35 0.40
29 31 0.36
30 8 0.09
31 8 0.09
ACGTcount: A:0.37, C:0.01, G:0.27, T:0.34
Consensus pattern (27 bp):
AGGGTAAAATGGTAATTTTGGAAAATT
Found at i:14180032 original size:29 final size:28
Alignment explanation
Indices: 14179929--14180273 Score: 264
Period size: 30 Copynumber: 11.8 Consensus size: 28
14179919 ATCGAGGTCA
* *
14179929 AAAATGGAATTTTAGGAAGTTTAGGGG-T
1 AAAATGTAATTTTAGAAAGTTT-GGGGTT
* * *
14179957 AAAATGGTAATTTTGGTAAA-ATTAGGGTT
1 AAAAT-GTAATTTTAG-AAAGTTTGGGGTT
* * * *
14179986 AAAATGGAATTTTGGAAAATTTGGGGGT
1 AAAATGTAATTTTAGAAAGTTTGGGGTT
* *
14180014 AAAATGTAATTTTTAGAAAGTTTTGGGTC
1 AAAATGTAA-TTTTAGAAAGTTTGGGGTT
* *
14180043 AAAATTTAATTTTAGAGAAGTTTTGGG-T
1 AAAATGTAATTTTAGA-AAGTTTGGGGTT
*
14180071 AAAATGTAATTTTTAGAAAGTTTTGAGGTT
1 AAAATGTAA-TTTTAGAAAG-TTTGGGGTT
* *
14180101 AAAATATAATTTTGGAGAAGTTTAGGGGTT
1 AAAATGTAATTTTAGA-AAGTTT-GGGGTT
* * *
14180131 AAAATGTTATTTTTAGAAAATTTTAGGGTT
1 AAAATG-TAATTTTAG-AAAGTTTGGGGTT
* *
14180161 AAAATATAATTTTGGAGAAGTTTAGGGGTT
1 AAAATGTAATTTTAGA-AAGTTT-GGGGTT
* *
14180191 AAAATGTAATTTTCAAAAAGTTTTAGGGTT
1 AAAATGTAATTTT-AGAAAG-TTTGGGGTT
* *
14180221 AATATATAATTTTAGAGAAGTTTAGGGGTT
1 AAAATGTAATTTTAGA-AAGTTT-GGGGTT
* *
14180251 AAAATATAATTTTTAAAAAGTTT
1 AAAATGTAA-TTTTAGAAAGTTT
14180274 TAGGATCAAA
Statistics
Matches: 254, Mismatches: 43, Indels: 38
0.76 0.13 0.11
Matches are distributed among these distances:
27 3 0.01
28 50 0.20
29 86 0.34
30 92 0.36
31 22 0.09
32 1 0.00
ACGTcount: A:0.38, C:0.01, G:0.22, T:0.39
Consensus pattern (28 bp):
AAAATGTAATTTTAGAAAGTTTGGGGTT
Found at i:14180161 original size:60 final size:60
Alignment explanation
Indices: 14179936--14180292 Score: 407
Period size: 60 Copynumber: 6.1 Consensus size: 60
14179926 TCAAAAATGG
* **
14179936 AATTTTAG-GAAGTTTAGGGG-TAAAATGGTAA-TTTTGGTAAAA--TTAGGGTTAAAATGG
1 AATTTTAGAGAAGTTTAGGGGTTAAAAT-GTAATTTTTAG-AAAATTTTAGGGTTAAAATAT
* * * * * *
14179993 AATTTTGGA-AAATTT-GGGGGTAAAATGTAATTTTTAGAAAGTTTT-GGGTCAAAATTT
1 AATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTTAGAAAATTTTAGGGTTAAAATAT
* *
14180050 AATTTTAGAGAAGTTT-TGGG-TAAAATGTAATTTTTAGAAAGTTTT-GAGGTTAAAATAT
1 AATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTTAGAAAATTTTAG-GGTTAAAATAT
* *
14180108 AATTTTGGAGAAGTTTAGGGGTTAAAATGTTATTTTTAGAAAATTTTAGGGTTAAAATAT
1 AATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTTAGAAAATTTTAGGGTTAAAATAT
* * *
14180168 AATTTTGGAGAAGTTTAGGGGTTAAAATGTAATTTTCA-AAAAGTTTTAGGGTTAATATAT
1 AATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTTAGAAAA-TTTTAGGGTTAAAATAT
* * *
14180228 AATTTTAGAGAAGTTTAGGGGTTAAAATATAATTTTTA-AAAAGTTTTAGGATCAAAATAT
1 AATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTTAGAAAA-TTTTAGGGTTAAAATAT
14180288 AATTT
1 AATTT
14180293 CTAAATAGTT
Statistics
Matches: 264, Mismatches: 25, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
56 11 0.04
57 66 0.25
58 34 0.13
59 7 0.03
60 145 0.55
61 1 0.00
ACGTcount: A:0.38, C:0.01, G:0.22, T:0.40
Consensus pattern (60 bp):
AATTTTAGAGAAGTTTAGGGGTTAAAATGTAATTTTTAGAAAATTTTAGGGTTAAAATAT
Found at i:14182252 original size:27 final size:28
Alignment explanation
Indices: 14182213--14182292 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 28
14182203 TTTTAAATTT
* * *
14182213 AACTAAATTTAAATTCAAAA-CAAATTTA
1 AACTTAATATAAATTCAAAATC-AATTCA
* *
14182241 AATTTAA-ATAAATTTAAAATCAATTCA
1 AACTTAATATAAATTCAAAATCAATTCA
14182268 AACTTAATATAAATTCAAAAATCAA
1 AACTTAATATAAATTC-AAAATCAA
14182293 AATTTTAATC
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
27 21 0.50
28 13 0.31
29 8 0.19
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (28 bp):
AACTTAATATAAATTCAAAATCAATTCA
Found at i:14182260 original size:17 final size:16
Alignment explanation
Indices: 14182204--14182258 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
14182194 TTAAAACCAT
*
14182204 TTTAAATTTAACTAAA
1 TTTAAATTTAAATAAA
* *
14182220 TTTAAATTCAAAACAAA
1 TTTAAATT-TAAATAAA
14182237 TTTAAATTTAAATAAA
1 TTTAAATTTAAATAAA
14182253 TTTAAA
1 TTTAAA
14182259 ATCAATTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
16 20 0.61
17 13 0.39
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:14183332 original size:19 final size:19
Alignment explanation
Indices: 14183310--14183354 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14183300 TTTTATTAGG
14183310 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
14183329 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
14183348 ATTTAAT
1 ATTTAAT
14183355 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:14183377 original size:14 final size:14
Alignment explanation
Indices: 14183354--14183383 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14183344 TTGTATTTAA
*
14183354 TTTATGTTTATCTT
1 TTTATATTTATCTT
14183368 TTTATATTTATCTT
1 TTTATATTTATCTT
14183382 TT
1 TT
14183384 AGAATTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTATATTTATCTT
Found at i:14186674 original size:25 final size:23
Alignment explanation
Indices: 14186643--14186765 Score: 124
Period size: 23 Copynumber: 5.3 Consensus size: 23
14186633 AGTGCTGGGC
14186643 AACAGAGAGCACACACAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
* * *
14186666 AACAGAGAGTACACAAAGTACTA
1 AACAGAGAGCACACACAGTGCTA
* *
14186689 ATCAGAGA-CTACACAAAGTGCTA
1 AACAGAGAGC-ACACACAGTGCTA
*
14186712 ATCAGAGAGCACACACAGTGCTA
1 AACAGAGAGCACACACAGTGCTA
* *
14186735 ATATTAGAGAGCACGAGAC-GTGCTA
1 A-A-CAGAGAGCAC-ACACAGTGCTA
14186760 AACAGA
1 AACAGA
14186766 AAGCGCGCTA
Statistics
Matches: 84, Mismatches: 11, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
23 63 0.75
24 2 0.02
25 16 0.19
26 3 0.04
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (23 bp):
AACAGAGAGCACACACAGTGCTA
Found at i:14186718 original size:69 final size:66
Alignment explanation
Indices: 14186600--14186735 Score: 177
Period size: 69 Copynumber: 2.0 Consensus size: 66
14186590 CGGAACAAAT
*
14186600 AGAGAGTACCAAAGTACTAACAGAGAGCACATAAGTGCTGGGCAACAGAGAGCACACACAGTGCT
1 AGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCT--G-AACAGAGAGCACACACAGTGCT
14186665 AAAC
63 AAAC
14186669 AGAGAGTACACAAAGTACTAATCAGAGA-CTACACAAAGTGCT-AATCAGAGAGCACACACAGTG
1 AGAGAGTAC-CAAAGTACTAA-CAGAGAGC-ACA-AAAGTGCTGAA-CAGAGAGCACACACAGTG
14186732 CTAA
61 CTAA
14186736 TATTAGAGAG
Statistics
Matches: 61, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
68 2 0.03
69 31 0.51
70 12 0.20
71 9 0.15
72 7 0.11
ACGTcount: A:0.43, C:0.21, G:0.22, T:0.13
Consensus pattern (66 bp):
AGAGAGTACCAAAGTACTAACAGAGAGCACAAAAGTGCTGAACAGAGAGCACACACAGTGCTAAA
C
Found at i:14190876 original size:19 final size:19
Alignment explanation
Indices: 14190854--14190898 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14190844 TTTTATTAGG
14190854 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
14190873 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
14190892 ATTTAAT
1 ATTTAAT
14190899 TTATATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:14190970 original size:28 final size:27
Alignment explanation
Indices: 14190937--14190989 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
14190927 TAGAATTTCA
*
14190937 ATTGGATCCAATTAGAGAATTAATTTAT
1 ATTGGATCCAACTAGA-AATTAATTTAT
* *
14190965 ATTGGATTCAACTAGAAATTTATTT
1 ATTGGATCCAACTAGAAATTAATTT
14190990 GTACTATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.42
Consensus pattern (27 bp):
ATTGGATCCAACTAGAAATTAATTTAT
Found at i:14209597 original size:15 final size:15
Alignment explanation
Indices: 14209577--14209619 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
14209567 TAAAATATTT
14209577 ATATTTTTTATTTTA
1 ATATTTTTTATTTTA
** *
14209592 ATATTTAATAATTTA
1 ATATTTTTTATTTTA
*
14209607 ATAATTTTTATTT
1 ATATTTTTTATTT
14209620 ATTGAAAATT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
ATATTTTTTATTTTA
Found at i:14209758 original size:21 final size:19
Alignment explanation
Indices: 14209708--14209759 Score: 50
Period size: 21 Copynumber: 2.6 Consensus size: 19
14209698 TTTTTAAAAT
* *
14209708 ATATTCTAAATTATATAAT
1 ATATTATAAATTATATAAA
* *
14209727 ATATAAAAAATATAATATAAA
1 ATATTATAAAT-T-ATATAAA
14209748 ATATTATAAATT
1 ATATTATAAATT
14209760 TAAAATGGAT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
19 8 0.32
20 2 0.08
21 15 0.60
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATATTATAAATTATATAAA
Found at i:14209764 original size:30 final size:30
Alignment explanation
Indices: 14209703--14209764 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
14209693 TTTATTTTTT
* * *
14209703 AAAATATATTCTAAATTATATAATATATAA
1 AAAATATAATATAAAATATATAATATATAA
*
14209733 AAAATATAATATAAAATATTATAA-ATTTAA
1 AAAATATAATATAAAATA-TATAATATATAA
14209763 AA
1 AA
14209765 TGGATCGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (30 bp):
AAAATATAATATAAAATATATAATATATAA
Found at i:14218352 original size:16 final size:16
Alignment explanation
Indices: 14218333--14218368 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14218323 TACAATATAA
14218333 ATAAATAATAAAATAT
1 ATAAATAATAAAATAT
**
14218349 ATAAATAATGTAATAT
1 ATAAATAATAAAATAT
14218365 ATAA
1 ATAA
14218369 TTTTTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATAAATAATAAAATAT
Found at i:14219914 original size:22 final size:22
Alignment explanation
Indices: 14219858--14219929 Score: 57
Period size: 22 Copynumber: 3.5 Consensus size: 22
14219848 TAATGCAAAA
14219858 ATAAAAATCTTC-AAAAAT-TAT
1 ATAAAAAT-TTCTAAAAATATAT
* *
14219879 A-AAAAA-AT-T-AAAATTTAT
1 ATAAAAATTTCTAAAAATATAT
* *
14219897 TTAAAATTTTCTAAAAATATAT
1 ATAAAAATTTCTAAAAATATAT
14219919 ATAAAAATTTC
1 ATAAAAATTTC
14219930 AAATGTGCGA
Statistics
Matches: 38, Mismatches: 7, Indels: 11
0.68 0.12 0.20
Matches are distributed among these distances:
17 5 0.13
18 4 0.11
19 4 0.11
20 6 0.16
21 2 0.05
22 17 0.45
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (22 bp):
ATAAAAATTTCTAAAAATATAT
Found at i:14228576 original size:39 final size:39
Alignment explanation
Indices: 14228517--14228712 Score: 284
Period size: 39 Copynumber: 5.0 Consensus size: 39
14228507 CCAAGGCACC
* * *
14228517 GTGATTTTCAGGGAAAAGATTCAAGTTCTGAGAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCGAGGGGCA
*
14228556 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCGAGGGGCA
* * *
14228595 GTGATTTTCAGGGCAAAGATTCAAGTTCAGCTAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCGAGGGGCA
* *
14228634 GTGATTTTCAGGGCAGAGATTCAAGTTCCGTGAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCGAGGGGCA
* * *
14228673 GTGATTTTCATGGCAGAGATTCAAGTTTTGCTAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCGAGGGGCA
14228712 G
1 G
14228713 GTCCTCATCA
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 142 1.00
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.28
Consensus pattern (39 bp):
GTGATTTTCAGGGCAGAGATTCAAGTTCTGCGAGGGGCA
Found at i:14229895 original size:26 final size:26
Alignment explanation
Indices: 14229855--14229915 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
14229845 GAAGTGTAGT
14229855 GTTAAAGAATATGTTTCGTTACACAG
1 GTTAAAGAATATGTTTCGTTACACAG
* * *
14229881 GTTAAAGAATGTGTTTGGTTATACAG
1 GTTAAAGAATATGTTTCGTTACACAG
14229907 G-TAAA-AATA
1 GTTAAAGAATA
14229916 CAAATTTGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 3 0.10
25 4 0.13
26 24 0.77
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (26 bp):
GTTAAAGAATATGTTTCGTTACACAG
Found at i:14235520 original size:22 final size:21
Alignment explanation
Indices: 14235493--14235534 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14235483 ATTTTTAATA
14235493 ATATTAA-ACATTATAATATTTG
1 ATATTAATAC-TTA-AATATTTG
14235515 ATATTAATACTTAAATATTT
1 ATATTAATACTTAAATATTT
14235535 TAAAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 10 0.53
23 2 0.11
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATTAATACTTAAATATTTG
Found at i:14237698 original size:108 final size:108
Alignment explanation
Indices: 14237531--14237735 Score: 317
Period size: 108 Copynumber: 1.9 Consensus size: 108
14237521 TGCGTAAGTC
*
14237531 CATGTGGTAGAGACCCATGACATTATATGACAATAAGTACATTTATGGTGATGCTTTTGGTGATA
1 CATGTGGTAGAGACCCATGACATTATATGACAATAAGTACATTTATGGTGATGCCTTTGGTGATA
14237596 TGCAAATCGAACTGGTAGATCACAACATGAAGGTGTGTGAGTT
66 TGCAAATCGAACTGGTAGATCACAACATGAAGGTGTGTGAGTT
* *
14237639 CATGTGGCT-GAGACCCATGGCATTATATGATAATAA-TA-ATATTCATGGTGATGCCTTTGGTG
1 CATGTGG-TAGAGACCCATGACATTATATGACAATAAGTACAT-TT-ATGGTGATGCCTTTGGTG
* *
14237701 ATATGTAAATCGAACTGGTAGATTACAACATGAAG
63 ATATGCAAATCGAACTGGTAGATCACAACATGAAG
14237736 TTATGAATAA
Statistics
Matches: 89, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
106 2 0.02
107 4 0.04
108 82 0.92
109 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (108 bp):
CATGTGGTAGAGACCCATGACATTATATGACAATAAGTACATTTATGGTGATGCCTTTGGTGATA
TGCAAATCGAACTGGTAGATCACAACATGAAGGTGTGTGAGTT
Found at i:14240128 original size:2 final size:2
Alignment explanation
Indices: 14240121--14240145 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14240111 TTAATAAATT
14240121 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
14240146 TAAGACTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14247635 original size:18 final size:18
Alignment explanation
Indices: 14247597--14247635 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14247587 TTTAATAAGC
*
14247597 TTTTATCTCAAAAATGTT
1 TTTTATCTCAAAAATGCT
* *
14247615 TTTTGTCTCAAAAGTGCT
1 TTTTATCTCAAAAATGCT
14247633 TTT
1 TTT
14247636 GAGAAACAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.51
Consensus pattern (18 bp):
TTTTATCTCAAAAATGCT
Found at i:14247851 original size:20 final size:21
Alignment explanation
Indices: 14247820--14247901 Score: 80
Period size: 20 Copynumber: 3.9 Consensus size: 21
14247810 AACAATAGTA
14247820 AAAACACA-AAAAATAACATCT
1 AAAACA-ATAAAAATAACATCT
*
14247841 -AAACAATAAAAATAACAACT
1 AAAACAATAAAAATAACATCT
*
14247861 AAAACAACAGGAAAAATAACAT-T
1 AAAAC-A-A-TAAAAATAACATCT
*
14247884 AAAACAATAAAAACAACA
1 AAAACAATAAAAATAACA
14247902 AAAATAGCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
19 1 0.02
20 26 0.51
21 5 0.10
22 2 0.04
23 7 0.14
24 10 0.20
ACGTcount: A:0.70, C:0.16, G:0.02, T:0.12
Consensus pattern (21 bp):
AAAACAATAAAAATAACATCT
Found at i:14247937 original size:21 final size:21
Alignment explanation
Indices: 14247849--14247929 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
14247839 CTAAACAATA
* *
14247849 AAAATAACAACTAAAACAACAG
1 AAAA-AACAACAAAAATAACAG
* * **
14247871 GAAAAATAACATTAA-AACA-
1 AAAAAACAACAAAAATAACAG
*
14247890 ATAAAAACAACAAAAATAGCAG
1 A-AAAAACAACAAAAATAACAG
*
14247912 AAAAAATAACAAAAATAA
1 AAAAAACAACAAAAATAA
14247930 TAGCAAAAGC
Statistics
Matches: 44, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
20 15 0.34
21 25 0.57
22 4 0.09
ACGTcount: A:0.72, C:0.12, G:0.05, T:0.11
Consensus pattern (21 bp):
AAAAAACAACAAAAATAACAG
Found at i:14248481 original size:26 final size:26
Alignment explanation
Indices: 14248421--14248482 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
14248411 TTAACATTAC
* *
14248421 TTTTTGTAAAGTGTTTTTAAAAAGTA
1 TTTTTGAAAAGTGCTTTTAAAAAGTA
** * *
14248447 TGGTAGAAAAGTGCTTTTAAGAAGTA
1 TTTTTGAAAAGTGCTTTTAAAAAGTA
14248473 TTTTTGAAAA
1 TTTTTGAAAA
14248483 ATTTGATTTA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (26 bp):
TTTTTGAAAAGTGCTTTTAAAAAGTA
Found at i:14248717 original size:24 final size:23
Alignment explanation
Indices: 14248679--14248728 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
14248669 TTAATATATG
* *
14248679 AAATATTAATTTTAAATATTTTT
1 AAATATTAATATTAAATATTTAT
*
14248702 AAATAATTAATATTAATTATTTAT
1 AAAT-ATTAATATTAAATATTTAT
14248726 AAA
1 AAA
14248729 ATCTAATTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AAATATTAATATTAAATATTTAT
Found at i:14249065 original size:13 final size:13
Alignment explanation
Indices: 14249047--14249074 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14249037 TTAAACAATT
14249047 ATTATCATCTCCA
1 ATTATCATCTCCA
14249060 ATTATCATCTCCA
1 ATTATCATCTCCA
14249073 AT
1 AT
14249075 AAGTTACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTATCATCTCCA
Found at i:14251787 original size:17 final size:17
Alignment explanation
Indices: 14251767--14251803 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
14251757 CTTCCTTGAC
*
14251767 CTTTAACTTTCCATCTT
1 CTTTAACTTTCCATATT
*
14251784 CTTTAACTTTTCATATT
1 CTTTAACTTTCCATATT
14251801 CTT
1 CTT
14251804 ATAATTACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.24, G:0.00, T:0.57
Consensus pattern (17 bp):
CTTTAACTTTCCATATT
Found at i:14257337 original size:16 final size:15
Alignment explanation
Indices: 14257316--14257357 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
14257306 ATATAAGTAA
14257316 ATTTTAAGTTTGAATT
1 ATTTTAAGTTT-AATT
* *
14257332 ATTTTAAATTTAGTT
1 ATTTTAAGTTTAATT
14257347 ATTTT-AGTTTA
1 ATTTTAAGTTTA
14257358 TAACGAACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 5 0.22
15 8 0.35
16 10 0.43
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (15 bp):
ATTTTAAGTTTAATT
Found at i:14264091 original size:14 final size:14
Alignment explanation
Indices: 14264072--14264125 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
14264062 TTCAAAGTTG
14264072 TTATTTTATTAATT
1 TTATTTTATTAATT
*
14264086 TTATTTTAAATAAATTT
1 TTATTTT--ATTAA-TT
*
14264103 ATTATTTTCTTAATT
1 -TTATTTTATTAATT
14264118 TTATTTTA
1 TTATTTTA
14264126 ACTAAAATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 14 0.44
15 2 0.06
16 7 0.22
17 2 0.06
18 7 0.22
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTTATTAATT
Found at i:14264110 original size:32 final size:33
Alignment explanation
Indices: 14264072--14264144 Score: 112
Period size: 32 Copynumber: 2.2 Consensus size: 33
14264062 TTCAAAGTTG
*
14264072 TTATTTTATTAATTTTATTTTAAATAAATTTA-
1 TTATTTTATTAATTTTATTTTAAATAAAATTAT
* *
14264104 TTATTTTCTTAATTTTATTTTAACTAAAATTAT
1 TTATTTTATTAATTTTATTTTAAATAAAATTAT
14264137 TTATTTTA
1 TTATTTTA
14264145 AGTAAATAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 29 0.81
33 7 0.19
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (33 bp):
TTATTTTATTAATTTTATTTTAAATAAAATTAT
Found at i:14265079 original size:14 final size:14
Alignment explanation
Indices: 14265060--14265093 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14265050 TTGCATCAAG
14265060 ATTTATTTTACTTT
1 ATTTATTTTACTTT
*
14265074 ATTTATTTTATTTT
1 ATTTATTTTACTTT
14265088 AGTTTA
1 A-TTTA
14265094 ACGTTTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (14 bp):
ATTTATTTTACTTT
Found at i:14265693 original size:2 final size:2
Alignment explanation
Indices: 14265686--14265710 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14265676 ATCCATATAA
14265686 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
14265711 ATCTGCTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:14267695 original size:3 final size:3
Alignment explanation
Indices: 14267687--14267727 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
14267677 AATAGCTCTT
14267687 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14267728 TAATGTACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14278518 original size:18 final size:18
Alignment explanation
Indices: 14278478--14278519 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
14278468 ATTTTTTTTT
*
14278478 AAAAAAATTGGTTGATAC
1 AAAAAAATTGGTTGACAC
*
14278496 AAAAAAATTTGTT-ACAC
1 AAAAAAATTGGTTGACAC
14278513 AGAAAAA
1 A-AAAAA
14278520 GAAAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.57, C:0.07, G:0.12, T:0.24
Consensus pattern (18 bp):
AAAAAAATTGGTTGACAC
Found at i:14279298 original size:20 final size:20
Alignment explanation
Indices: 14279244--14279303 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
14279234 TATTTTAAGA
*
14279244 TTTTTT-TAATTTTTAATAT
1 TTTTTTATAATATTTAATAT
* * *
14279263 TTTTATATATTCTTTAGA-AT
1 TTTTTTATAATATTTA-ATAT
14279283 TTTTTTATAATATTT-ATAT
1 TTTTTTATAATATTTAATAT
14279302 TT
1 TT
14279304 GGTGAAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
18 1 0.03
19 9 0.28
20 21 0.66
21 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTTTATAATATTTAATAT
Found at i:14281348 original size:25 final size:27
Alignment explanation
Indices: 14281316--14281367 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
14281306 AATTACAAAT
*
14281316 ATTTAATAGC-AAACTCA-AATAAAAA
1 ATTTAATAACTAAACTCATAATAAAAA
*
14281341 ATTTAATAACTAAAGTCATAATAAAAA
1 ATTTAATAACTAAACTCATAATAAAAA
14281368 TCCCATGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.39
26 6 0.26
27 8 0.35
ACGTcount: A:0.60, C:0.10, G:0.04, T:0.27
Consensus pattern (27 bp):
ATTTAATAACTAAACTCATAATAAAAA
Found at i:14285852 original size:3 final size:3
Alignment explanation
Indices: 14285844--14285888 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
14285834 TTCCATTTGA
14285844 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14285889 TTATCGATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14287163 original size:3 final size:3
Alignment explanation
Indices: 14287155--14287188 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
14287145 AGTTTTTGTC
14287155 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14287189 TGTTGGAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14290531 original size:3 final size:3
Alignment explanation
Indices: 14290525--14290569 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
14290515 GAGGAGGAAA
* * *
14290525 TGG TGG TGG AGG TGG AGG TGG TAG TGG TGG TGG TGG TGG TGG TGG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG
14290570 AGGAGGAGGA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.07, C:0.00, G:0.64, T:0.29
Consensus pattern (3 bp):
TGG
Found at i:14290538 original size:6 final size:6
Alignment explanation
Indices: 14290529--14290590 Score: 54
Period size: 6 Copynumber: 10.3 Consensus size: 6
14290519 AGGAAATGGT
* * * *
14290529 GGTGGA GGTGGA GGTGGTA -GTGGT GGTGGT GGTGGT GGTGGA GGAGGA
1 GGTGGA GGTGGA GGTGG-A GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA
* *
14290577 GGAGGA GGAGGA GG
1 GGTGGA GGTGGA GG
14290591 AGGAAATGGT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
6 50 0.98
7 1 0.02
ACGTcount: A:0.16, C:0.00, G:0.66, T:0.18
Consensus pattern (6 bp):
GGTGGA
Found at i:14290574 original size:3 final size:3
Alignment explanation
Indices: 14290568--14290594 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14290558 TGGTGGTGGT
14290568 GGA GGA GGA GGA GGA GGA GGA GGA GGA
1 GGA GGA GGA GGA GGA GGA GGA GGA GGA
14290595 AATGGTGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
GGA
Found at i:14290709 original size:6 final size:6
Alignment explanation
Indices: 14290692--14290737 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
14290682 CACTGTAGTT
* * * *
14290692 GTGGTG GTGGGG GAGGGG GTGGGG GTGGGG GTGGAG GTGGCG GTGG
1 GTGGGG GTGGGG GTGGGG GTGGGG GTGGGG GTGGGG GTGGGG GTGG
14290738 AAATGGTGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.04, C:0.02, G:0.76, T:0.17
Consensus pattern (6 bp):
GTGGGG
Found at i:14292908 original size:18 final size:18
Alignment explanation
Indices: 14292885--14292919 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14292875 CTTTTTTTCT
14292885 TTTTATT-TTCTATGTTTA
1 TTTTATTATT-TATGTTTA
14292903 TTTTATTATTTATGTTT
1 TTTTATTATTTATGTTT
14292920 GAGATTTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (18 bp):
TTTTATTATTTATGTTTA
Found at i:14293946 original size:2 final size:2
Alignment explanation
Indices: 14293939--14294022 Score: 168
Period size: 2 Copynumber: 42.0 Consensus size: 2
14293929 CAAACCCTAA
14293939 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14293981 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14294023 TTTAAAATGC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 82 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14295557 original size:15 final size:15
Alignment explanation
Indices: 14295537--14295566 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14295527 AGCTGGTACT
*
14295537 TCTTCTTCCTCCTCA
1 TCTTCTTCATCCTCA
14295552 TCTTCTTCATCCTCA
1 TCTTCTTCATCCTCA
14295567 CGTTTCTGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (15 bp):
TCTTCTTCATCCTCA
Found at i:14296036 original size:24 final size:24
Alignment explanation
Indices: 14295993--14296042 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
14295983 TTTGGTGAAG
* *
14295993 CTCTCTCTTTAATTTTTACTTTTT
1 CTCTCTCTTTAATTTCTACTGTTT
**
14296017 CTCTCTCTTTTGTTTCTACTGTTT
1 CTCTCTCTTTAATTTCTACTGTTT
14296041 CT
1 CT
14296043 ACATACAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.08, C:0.24, G:0.04, T:0.64
Consensus pattern (24 bp):
CTCTCTCTTTAATTTCTACTGTTT
Found at i:14299744 original size:63 final size:61
Alignment explanation
Indices: 14299522--14299871 Score: 315
Period size: 62 Copynumber: 5.8 Consensus size: 61
14299512 CTTTTTTGTC
* * * * * *
14299522 AGAAAAAAA-TAC-AATTTTTTT-GTGTTGGCCATTAAATAGCTGATACCCCCTGTTCTCG
1 AGAAAAAAATTTCAAATTTTTTTGGTGTTGGCCATCAAATGGCCGACACCCCCTTTTCTCG
* * * * * *
14299580 AAAAAAAAATTT-ACA-TTTTTGGGTGTTGGCCATCAAATGACCGACACCCCATTTTTTCG
1 AGAAAAAAATTTCAAATTTTTTTGGTGTTGGCCATCAAATGGCCGACACCCCCTTTTCTCG
* * * **** * *
14299639 A-AAAAAAATTGC--A-TTTTTGGGTGTTGGTCATTGCGTGACCGACACTCCCCTATTCTCG
1 AGAAAAAAATTTCAAATTTTTTTGGTGTTGGCCATCAAATGGCCGACAC-CCCCTTTTCTCG
* * *
14299697 AGACAAAAATTTCAAATTTTATTGGGTTTTGGCCATCAAATGGCCGACACCCCTCTTTTCTCG
1 AGAAAAAAATTTCAAATTTT-TTTGGTGTTGGCCATCAAATGGCCGACACCCC-CTTTTCTCG
** *
14299760 AGAAAAAAATTTCAAATTTTTTTCATGTTGGCCATCAAATGGCCGACACCCCTTTTTCTCG
1 AGAAAAAAATTTCAAATTTTTTTGGTGTTGGCCATCAAATGGCCGACACCCCCTTTTCTCG
* * *
14299821 A-ATAAAAAATTTTTAATTTTTTTTGGTGTTGACCATCAAATGGCCGACACC
1 AGA-AAAAAA-TTTCAAATTTTTTTGGTGTTGGCCATCAAATGGCCGACACC
14299872 AACTTCTCCT
Statistics
Matches: 237, Mismatches: 42, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
57 28 0.12
58 32 0.14
59 41 0.17
60 1 0.00
61 16 0.07
62 70 0.30
63 49 0.21
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (61 bp):
AGAAAAAAATTTCAAATTTTTTTGGTGTTGGCCATCAAATGGCCGACACCCCCTTTTCTCG
Found at i:14300748 original size:30 final size:30
Alignment explanation
Indices: 14300688--14300779 Score: 91
Period size: 30 Copynumber: 3.1 Consensus size: 30
14300678 TAATAATTAG
* * * *
14300688 AATATACAGGAAATTAG-AATGAAAAATTAA
1 AATATACAAGAAATTCGAAAT-TAAATTTAA
14300718 AATATACAAGAAATTCGAAATTAAATTTAA
1 AATATACAAGAAATTCGAAATTAAATTTAA
*
14300748 AATA-AAAATGAAATTAC-AAATTAAATTTAA
1 AATATACAA-GAAATT-CGAAATTAAATTTAA
14300778 AA
1 AA
14300780 AGTAAAGGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
29 3 0.06
30 47 0.87
31 4 0.07
ACGTcount: A:0.61, C:0.04, G:0.08, T:0.27
Consensus pattern (30 bp):
AATATACAAGAAATTCGAAATTAAATTTAA
Found at i:14302591 original size:93 final size:93
Alignment explanation
Indices: 14302361--14302740 Score: 534
Period size: 90 Copynumber: 3.9 Consensus size: 93
14302351 ATAAAAATTG
*
14302361 TAAT-ATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATGTGTTGTCAAATCAACA
1 TAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATGTATTGTCAAATCAACA
14302425 CATTATATGATAAAAATTAAA--T-TAA
66 CATTATATGATAAAAATTAAATTTATAA
*
14302450 TAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATGTATTGTCAAATAAACA
1 TAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATGTATTGTCAAATCAACA
14302515 CATTATATGATAAAAATTAAATTTATAA
66 CATTATATGATAAAAATTAAATTTATAA
*
14302543 TAATAATAATATTAATTTTTATTTAAAGATATAAAATTAATAAATAATGTATTGTCAAATCAACA
1 TAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATGTATTGTCAAATCAACA
14302608 CATTATATGATAAAAATAAAATTTATAATAATAATAATAA
66 CATTATATGAT----A-AAAA-TTA-AAT--T--T-ATAA
* *
14302648 TAATAATAATAATAATTTTTATTTCAAGATATAAAATTAATAAATAATATATTGTCATGTCAAAT
1 TAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATGTA---T--TGTCAAAT
14302713 CAACACATTATATGATAAAAATTAAATT
61 CAACACATTATATGATAAAAATTAAATT
14302741 AAATTTTCAA
Statistics
Matches: 263, Mismatches: 7, Indels: 30
0.88 0.02 0.10
Matches are distributed among these distances:
89 4 0.02
90 79 0.30
92 1 0.00
93 77 0.29
97 1 0.00
98 4 0.02
99 3 0.01
100 3 0.01
101 1 0.00
102 1 0.00
103 3 0.01
104 4 0.02
105 56 0.21
106 1 0.00
108 1 0.00
110 24 0.09
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (93 bp):
TAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATGTATTGTCAAATCAACA
CATTATATGATAAAAATTAAATTTATAA
Found at i:14302640 original size:3 final size:3
Alignment explanation
Indices: 14302632--14302663 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14302622 AATAAAATTT
14302632 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14302664 TTTTATTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14302665 original size:105 final size:107
Alignment explanation
Indices: 14302539--14302740 Score: 327
Period size: 105 Copynumber: 1.9 Consensus size: 107
14302529 AATTAAATTT
* *
14302539 ATAATAATAATAATATTAATTTTTATTTAAAGATATAAAATTAATAAATAATGTA-T-TGTCAAA
1 ATAATAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATATATTATGTCAAA
14302602 TCAACACATTATATGATAAAAATAAAATTTATAATAATAATA
66 TCAACACATTATATGATAAAAATAAAATTTATAATAATAATA
*
14302644 ATAATAATAATAATAATAATTTTTATTTCAAGATATAAAATTAATAAATAATATATTGTCATGTC
1 ATAATAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATATA-T-T-ATGTC
*
14302709 AAATCAACACATTATATGATAAAAATTAAATT
63 AAATCAACACATTATATGATAAAAATAAAATT
14302741 AAATTTTCAA
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
105 52 0.59
108 1 0.01
110 35 0.40
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (107 bp):
ATAATAATAATAATAATAATTTTTATTTAAAGATATAAAATTAATAAATAATATATTATGTCAAA
TCAACACATTATATGATAAAAATAAAATTTATAATAATAATA
Found at i:14306466 original size:58 final size:58
Alignment explanation
Indices: 14306335--14306854 Score: 376
Period size: 57 Copynumber: 8.8 Consensus size: 58
14306325 AGGAGAAGTC
* * *
14306335 GGTGTCGGCCATTTGATGGCCAACACGAAAAAAATTTGAAATTTTTTTCTCGAGAATAGGG
1 GGTGTCGGCCATTTGATGGCCAACAC-CAAAAAA-TTG-AATTTTTTTTTCGAGAAAAGGG
* * * *
14306396 AGTGTCGGCCATTTGATGACCAACACCCAAAAA-TGCAATTTTTTTTTCTAGAAAAGGG
1 GGTGTCGGCCATTTGATGGCCAACACCAAAAAATTG-AATTTTTTTTTCGAGAAAAGGG
* * *
14306454 GGTGTCGACCATTTGATGGCCAACACAAAAAAATTTTGAATTTTTTTTCTCGAGAAAAGAAG
1 GGTGTCGGCCATTTGATGGCCAACACCAAAAAA--TTGAATTTTTTTT-TCGAGAAAAG-GG
* *** * * *
14306516 GGTGTCGACCATGCAATGGCTAATACCAAAAAA-TGCAA-TTTTTTTTCAAGAAAAGGG
1 GGTGTCGGCCATTTGATGGCCAACACCAAAAAATTG-AATTTTTTTTTCGAGAAAAGGG
* * * * * * *
14306573 AGTGTCGGTCATTTGATAGCCAATACCAAAAAATTTTGAATTTTTTTCT-GA-AACAGGA
1 GGTGTCGGCCATTTGATGGCCAACACCAAAAAA--TTGAATTTTTTTTTCGAGAAAAGGG
** *** * * * * *
14306631 GGTGTCGTTCATACAATGGCCAACACCCAAAAA-TGCAA-TCTTTTTTAGAAAAAATGG
1 GGTGTCGGCCATTTGATGGCCAACACCAAAAAATTG-AATTTTTTTTTCGAGAAAAGGG
* * * * *
14306688 GGTGTCGGTCATTTGATGGCTAACACAAAAAAATTTTGAATTTTTTTTTCTGA-AATAGAG
1 GGTGTCGGCCATTTGATGGCCAACACCAAAAAA--TTGAATTTTTTTTTC-GAGAAAAGGG
* * *** * * *
14306748 GATGTCTGCCATGCAATGGCCAATACCCAAAAATAT-AA-TTTTTTTTCGAGAAAATGG
1 GGTGTCGGCCATTTGATGGCCAACACCAAAAAAT-TGAATTTTTTTTTCGAGAAAAGGG
*
14306805 GGTGTCGGCCATTTGATGGCCAATACCAAAAAATTTTGAATTTTTTTTTC
1 GGTGTCGGCCATTTGATGGCCAACACCAAAAAA--TTGAATTTTTTTTTC
14306855 TGAAATAGCA
Statistics
Matches: 356, Mismatches: 79, Indels: 49
0.74 0.16 0.10
Matches are distributed among these distances:
55 8 0.02
56 6 0.02
57 96 0.27
58 92 0.26
59 18 0.05
60 71 0.20
61 37 0.10
62 28 0.08
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (58 bp):
GGTGTCGGCCATTTGATGGCCAACACCAAAAAATTGAATTTTTTTTTCGAGAAAAGGG
Found at i:14306546 original size:119 final size:116
Alignment explanation
Indices: 14306335--14306862 Score: 593
Period size: 117 Copynumber: 4.5 Consensus size: 116
14306325 AGGAGAAGTC
*
14306335 GGTGTCGGCCATTTGATGGCCAACACGAAAAAAA-TTTGAAATTTTTTTCTCGAGAATAG-GGAG
1 GGTGTCGGCCATTTGATGGCCAACAC-AAAAAAATTTTGAATTTTTTTTCTCGA-AATAGAGG-G
*** * *
14306398 TGTCGGCCATTTGATGACCAACACCCAAAAATGCAATTTTTTTTTCTAGAAAAGGG
63 TGTC-GCCATGCAATGGCCAACACCCAAAAATGCAA-TTTTTTTTCGAGAAAAGGG
* *
14306454 GGTGTCGACCATTTGATGGCCAACACAAAAAAATTTTGAATTTTTTTTCTCGAGAAAAGAAGGGT
1 GGTGTCGGCCATTTGATGGCCAACACAAAAAAATTTTGAATTTTTTTTCTCGA-AATAG-AGGGT
* * * *
14306519 GTCGACCATGCAATGGCTAATACCAAAAAATGCAATTTTTTTTCAAGAAAAGGG
64 GTCG-CCATGCAATGGCCAACACCCAAAAATGCAATTTTTTTTCGAGAAAAGGG
* * * * * *
14306573 AGTGTCGGTCATTTGATAGCCAATACCAAAAAATTTTGAA-TTTTTTTCT-GAAACAG-GAGGTG
1 GGTGTCGGCCATTTGATGGCCAACACAAAAAAATTTTGAATTTTTTTTCTCGAAATAGAG-GGTG
* * * * * *
14306635 TCGTTCATACAATGGCCAACACCCAAAAATGCAATCTTTTTTAGAAAAAATGG
65 TCG-CCATGCAATGGCCAACACCCAAAAATGCAATTTTTTTTCGAGAAAAGGG
* * *
14306688 GGTGTCGGTCATTTGATGGCTAACACAAAAAAATTTTGAATTTTTTTT-TCTGAAATAGAGGATG
1 GGTGTCGGCCATTTGATGGCCAACACAAAAAAATTTTGAATTTTTTTTCTC-GAAATAGAGGGTG
* ** *
14306752 TCTGCCATGCAATGGCCAATACCCAAAAATATAATTTTTTTTCGAGAAAATGG
65 TC-GCCATGCAATGGCCAACACCCAAAAATGCAATTTTTTTTCGAGAAAAGGG
* *
14306805 GGTGTCGGCCATTTGATGGCCAATACCAAAAAATTTTGAATTTTTTTT-TCTGAAATAG
1 GGTGTCGGCCATTTGATGGCCAACACAAAAAAATTTTGAATTTTTTTTCTC-GAAATAG
14306863 CATGGCTGAC
Statistics
Matches: 351, Mismatches: 48, Indels: 22
0.83 0.11 0.05
Matches are distributed among these distances:
114 1 0.00
115 82 0.23
116 11 0.03
117 108 0.31
118 18 0.05
119 101 0.29
120 28 0.08
121 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (116 bp):
GGTGTCGGCCATTTGATGGCCAACACAAAAAAATTTTGAATTTTTTTTCTCGAAATAGAGGGTGT
CGCCATGCAATGGCCAACACCCAAAAATGCAATTTTTTTTCGAGAAAAGGG
Found at i:14341709 original size:3 final size:3
Alignment explanation
Indices: 14341701--14341726 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14341691 CAAATTTCAT
14341701 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
14341727 TTAATTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14342373 original size:17 final size:17
Alignment explanation
Indices: 14342334--14342383 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
14342324 CATTACTTTT
* * *
14342334 TAAAAGTACTTTTGAGG
1 TAAAAGTATTTTTAAGA
14342351 TAAAAAGTATTTTTAAGA
1 T-AAAAGTATTTTTAAGA
*
14342369 TAAAAGTATTATTAA
1 TAAAAGTATTTTTAA
14342384 ACAAAATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.46, C:0.02, G:0.14, T:0.38
Consensus pattern (17 bp):
TAAAAGTATTTTTAAGA
Found at i:14344215 original size:18 final size:18
Alignment explanation
Indices: 14344180--14344225 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
14344170 AAATAGGTTT
14344180 TTAATTAAATAAAATT-AA
1 TTAATTAAA-AAAATTAAA
14344198 TTAATTAAAAAAATTTAAA
1 TTAATTAAAAAAA-TTAAA
14344217 TTAA-TAAAA
1 TTAATTAAAA
14344226 CTTTGTCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.15
18 16 0.62
19 6 0.23
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TTAATTAAAAAAATTAAA
Found at i:14364329 original size:5 final size:5
Alignment explanation
Indices: 14364319--14364345 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
14364309 GGGTGAGGGT
14364319 GGGAG GGGAG GGGAG GGGAG GGGAG GG
1 GGGAG GGGAG GGGAG GGGAG GGGAG GG
14364346 TTTTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGAG
Found at i:14364385 original size:25 final size:24
Alignment explanation
Indices: 14364351--14364399 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
14364341 GAGGGTTTTT
14364351 TTTATTTTATTTAATATTAATATA
1 TTTATTTTATTTAATATTAATATA
14364375 TTTATATTTATTTAATATTAATATA
1 TTTAT-TTTATTTAATATTAATATA
14364400 AAATTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTATTTTATTTAATATTAATATA
Found at i:14364389 original size:19 final size:20
Alignment explanation
Indices: 14364353--14364392 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
14364343 GGGTTTTTTT
14364353 TATTTTATTTAATATTAATA
1 TATTTTATTTAATATTAATA
14364373 TATTTATATTT-AT-TTAATA
1 TATTT-TATTTAATATTAATA
14364392 T
1 T
14364393 TAATATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 7 0.37
21 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTATTTAATATTAATA
Found at i:14364414 original size:28 final size:25
Alignment explanation
Indices: 14364356--14364414 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 25
14364346 TTTTTTTTAT
*
14364356 TTTATTTAATATTAATATATTTATA
1 TTTATTTAATATTAATATATTTAAA
14364381 TTTATTTAATATTAATATAAAATTTAAA
1 TTTATTTAATATTAATAT---ATTTAAA
14364409 TTTATT
1 TTTATT
14364415 ATTATACTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 18 0.60
28 12 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTATTTAATATTAATATATTTAAA
Found at i:14364505 original size:23 final size:23
Alignment explanation
Indices: 14364479--14364523 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
14364469 TAATATTTTA
*
14364479 TATTTTTATATAATTTTTAAATT
1 TATTATTATATAATTTTTAAATT
*
14364502 TATTATTATATATTTTTTAAAT
1 TATTATTATATAATTTTTAAAT
14364524 ATTCATGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TATTATTATATAATTTTTAAATT
Found at i:14364526 original size:21 final size:21
Alignment explanation
Indices: 14364478--14364541 Score: 67
Period size: 23 Copynumber: 2.9 Consensus size: 21
14364468 ATAATATTTT
* *
14364478 ATATTTTTATATAATTTTTAA
1 ATATTATTATATATTTTTTAA
14364499 ATTTATTATTATATATTTTTTAA
1 A--TATTATTATATATTTTTTAA
14364522 ATATTCATGTAT-TATTTTTT
1 ATATT-AT-TATATATTTTTT
14364542 TGAACTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
21 5 0.14
22 10 0.27
23 22 0.59
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
ATATTATTATATATTTTTTAA
Found at i:14365453 original size:12 final size:12
Alignment explanation
Indices: 14365438--14365479 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
14365428 GTTCAATTAT
14365438 ATGTTCGTGAAC
1 ATGTTCGTGAAC
* **
14365450 ATGTTTGTTTA-
1 ATGTTCGTGAAC
14365461 ATGTTCGTGAAC
1 ATGTTCGTGAAC
14365473 ATGTTCG
1 ATGTTCG
14365480 ATTAAGTTAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.21, C:0.12, G:0.24, T:0.43
Consensus pattern (12 bp):
ATGTTCGTGAAC
Found at i:14365484 original size:23 final size:23
Alignment explanation
Indices: 14365423--14365484 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
14365413 ATTGTTCCTA
*
14365423 AACATGTTCAATTATATGTTCGTG
1 AACATGTTCGATTA-ATGTTCGTG
* *
14365447 AACATGTTTGTTTAATGTTCGTG
1 AACATGTTCGATTAATGTTCGTG
14365470 AACATGTTCGATTAA
1 AACATGTTCGATTAA
14365485 GTTAAATGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
23 22 0.67
24 11 0.33
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (23 bp):
AACATGTTCGATTAATGTTCGTG
Found at i:14374012 original size:20 final size:20
Alignment explanation
Indices: 14373989--14374036 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
14373979 ACTACCTGGT
14373989 AAGTCCATTTTTGCC-TGGAC
1 AAGTCCA-TTTTGCCTTGGAC
*
14374009 AAGTCCCA-TTTGCCTTGGTC
1 AAGT-CCATTTTGCCTTGGAC
14374029 AAGTCCAT
1 AAGTCCAT
14374037 GCAGTGCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 9 0.38
20 12 0.50
21 3 0.12
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (20 bp):
AAGTCCATTTTGCCTTGGAC
Found at i:14374036 original size:19 final size:18
Alignment explanation
Indices: 14373983--14374036 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 18
14373973 AAATTTACTA
14373983 CCTGGT-AAGTCCATTTTTG
1 CCTGGTCAAGTCCA--TTTG
*
14374002 CCTGGACAAGTCCCATTTG
1 CCTGGTCAAGT-CCATTTG
14374021 CCTTGGTCAAGTCCAT
1 CC-TGGTCAAGTCCAT
14374037 GCAGTGCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 15 0.50
20 12 0.40
21 3 0.10
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.33
Consensus pattern (18 bp):
CCTGGTCAAGTCCATTTG
Found at i:14376604 original size:21 final size:19
Alignment explanation
Indices: 14376580--14376618 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
14376570 CAGACTATCG
*
14376580 AGAAAATATAAGTTACAACAA
1 AGAAAACAT-AGTTA-AACAA
14376601 AGAAAACATAGTTAAACA
1 AGAAAACATAGTTAAACA
14376619 GAGATTTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.18
Consensus pattern (19 bp):
AGAAAACATAGTTAAACAA
Found at i:14378486 original size:22 final size:21
Alignment explanation
Indices: 14378450--14378498 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
14378440 TTTCATACAG
*
14378450 ATATTTTTAACTTTTTATAAT
1 ATATTTTTAAATTTTTATAAT
14378471 ATATATTTTAAATTTTTAT-AT
1 ATAT-TTTTAAATTTTTATAAT
14378492 AT-TTTTT
1 ATATTTTT
14378499 GAATAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 4 0.15
20 1 0.04
21 8 0.31
22 13 0.50
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
ATATTTTTAAATTTTTATAAT
Found at i:14378517 original size:23 final size:22
Alignment explanation
Indices: 14378481--14378523 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14378471 ATATATTTTA
* *
14378481 AATTTTTATATATTTTTTGAAT
1 AATTTTTAAATATTTGTTGAAT
14378503 AATTTTTAAATTATTTGTTGA
1 AATTTTTAAA-TATTTGTTGA
14378524 CATATCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (22 bp):
AATTTTTAAATATTTGTTGAAT
Found at i:14378658 original size:23 final size:22
Alignment explanation
Indices: 14378593--14378668 Score: 64
Period size: 24 Copynumber: 3.3 Consensus size: 22
14378583 TAACTATTTA
*
14378593 AAAAATAATAAATTAACTATTTTTT
1 AAAAATAA-AAATTAA--ATTTATT
* *
14378618 AAAAATTAATATTCAAATTTAATT
1 AAAAATAAAAATT-AAATTT-ATT
*
14378642 AAAAATAAAAATTAAATTGA-T
1 AAAAATAAAAATTAAATTTATT
14378663 AAAAAT
1 AAAAAT
14378669 GTAAACATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 7 0.16
22 1 0.02
23 9 0.21
24 17 0.40
25 9 0.21
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (22 bp):
AAAAATAAAAATTAAATTTATT
Found at i:14385655 original size:19 final size:18
Alignment explanation
Indices: 14385607--14385655 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
14385597 TCAATTTTTT
*
14385607 TAAAAAAAAACATATGTA
1 TAAAAATAAACATATGTA
*
14385625 TCAAAATAAACAT-TGATA
1 TAAAAATAAACATATG-TA
14385643 TAAAAAGTAAACA
1 TAAAAA-TAAACA
14385656 CCAAAAAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 2 0.08
18 18 0.69
19 6 0.23
ACGTcount: A:0.63, C:0.08, G:0.06, T:0.22
Consensus pattern (18 bp):
TAAAAATAAACATATGTA
Found at i:14385963 original size:2 final size:2
Alignment explanation
Indices: 14385956--14385997 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
14385946 GCCAAAAATC
14385956 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14385998 CGGGTATAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14386268 original size:3 final size:3
Alignment explanation
Indices: 14386260--14386284 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14386250 CAAGACTTAC
14386260 TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA T
14386285 ATATATATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:14392347 original size:1 final size:1
Alignment explanation
Indices: 14392343--14392368 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
14392333 AATATTTTTC
14392343 GGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGG
14392369 AATGGTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:14401838 original size:225 final size:226
Alignment explanation
Indices: 14401576--14402029 Score: 874
Period size: 226 Copynumber: 2.0 Consensus size: 226
14401566 AAAAATAATC
*
14401576 AATGTATGGCAAATATATGATAGGTGATATGATA-TTTTTTTGTATAGTTCAATTACTTTTAATT
1 AATGTATGGCAAATATATGATAGGTGATACGATATTTTTTTTGTATAGTTCAATTACTTTTAATT
*
14401640 TTATTTATTTATTTAATTATTTTATTAATTAAAAATAATGAATTTTTTTTAATTTAGGGTTTTAA
66 TTATTTATTTATTTAATTATTTTATTAATTAAAAATAATGAATTTCTTTTAATTTAGGGTTTTAA
14401705 AATATTTTTTATTTAATATTAATTCGTTAAGCATAATTCAATATCTATTTTTTTTAACATGAATT
131 AATATTTTTTATTTAATATTAATTCGTTAAGCATAATTCAATATCTATTTTTTTTAACATGAATT
14401770 TTCTATAATACAGACAATATTTTTATAGCAT
196 TTCTATAATACAGACAATATTTTTATAGCAT
14401801 AATGTATGGCAAATATATGATAGGTGATACGATATTTTTTTTGTATAGTTCAATTACTTTTAATT
1 AATGTATGGCAAATATATGATAGGTGATACGATATTTTTTTTGTATAGTTCAATTACTTTTAATT
14401866 TTATTTATTTATTTAATTATTTTATTAATTAAAAATAATGAATTTCTTTTAATTTAGGGTTTTAA
66 TTATTTATTTATTTAATTATTTTATTAATTAAAAATAATGAATTTCTTTTAATTTAGGGTTTTAA
*
14401931 AATATTTTTTATTTAGTATTAATTCGTTAAGCATAATTCAATATCTATTTTTTTTAACATGAATT
131 AATATTTTTTATTTAATATTAATTCGTTAAGCATAATTCAATATCTATTTTTTTTAACATGAATT
14401996 TTCTATAATACAGACAATATTTTTATAGCAT
196 TTCTATAATACAGACAATATTTTTATAGCAT
14402027 AAT
1 AAT
14402030 AAAAAAATTA
Statistics
Matches: 225, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
225 33 0.15
226 192 0.85
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.51
Consensus pattern (226 bp):
AATGTATGGCAAATATATGATAGGTGATACGATATTTTTTTTGTATAGTTCAATTACTTTTAATT
TTATTTATTTATTTAATTATTTTATTAATTAAAAATAATGAATTTCTTTTAATTTAGGGTTTTAA
AATATTTTTTATTTAATATTAATTCGTTAAGCATAATTCAATATCTATTTTTTTTAACATGAATT
TTCTATAATACAGACAATATTTTTATAGCAT
Found at i:14403067 original size:30 final size:28
Alignment explanation
Indices: 14403025--14403081 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
14403015 TTTTTTATAA
* *
14403025 AAGTAACCATTTTTTTAAATTAATTACGT
1 AAGTAACCATTTTCTT-AATTAAATACGT
14403054 AAGTAACCCATTTTCTTAATTAAATACG
1 AAGTAA-CCATTTTCTTAATTAAATACG
14403082 AAAATAGCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (28 bp):
AAGTAACCATTTTCTTAATTAAATACGT
Found at i:14403502 original size:20 final size:19
Alignment explanation
Indices: 14403479--14403527 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
14403469 TTTCTTCTCT
14403479 AAAATAATATTTTTAAA-TTA
1 AAAATAA-A-TTTTAAATTTA
14403499 AAAATAAATTTTAAATTTTA
1 AAAATAAATTTTAAA-TTTA
14403519 AAAATAAAT
1 AAAATAAAT
14403528 AATAAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.26
19 1 0.04
20 19 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATAAATTTTAAATTTA
Found at i:14403533 original size:20 final size:20
Alignment explanation
Indices: 14403496--14403534 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14403486 TATTTTTAAA
**
14403496 TTAAAAATAAATTTTAAATT
1 TTAAAAATAAATAATAAATT
14403516 TTAAAAATAAATAATAAAT
1 TTAAAAATAAATAATAAAT
14403535 AAAAAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAAAAATAAATAATAAATT
Found at i:14403602 original size:109 final size:106
Alignment explanation
Indices: 14403478--14403716 Score: 251
Period size: 104 Copynumber: 2.2 Consensus size: 106
14403468 CTTTCTTCTC
**
14403478 TAAAATA-ATATTTTTAAATTAAAAATAAAT-TTTAAATTTTAAA-AATAAATAATAAATAA-AA
1 TAAAATATATA-TTTTAAATT-AAAATAAATATTTAAATAATAAATAATAAATAATAAATAATAA
* * *
14403539 A-AATTTCATTGGAAATTAGTGGTGTCATTTAACATGACTCCACCAAAAA
64 ATAA-TTAATTGG------GTGGCGCCATTTAACATGACTCCACCAAAAA
* *
14403588 -AAAATATATATTTT-AATTAAATTATATATTTAAATAATAAATAATAAATAATAAATAATAAAT
1 TAAAATATATATTTTAAATTAAAATAAATATTTAAATAATAAATAATAAATAATAAATAATAAAT
* *
14403651 AATTAATTGGGTGGCGCCATTTAATATGGCTCCACCAAAAA
66 AATTAATTGGGTGGCGCCATTTAACATGACTCCACCAAAAA
*
14403692 TAAAATATATA-TTTAAATTTAAATA
1 TAAAATATATATTTTAAATTAAAATA
14403717 TGATAAAAAT
Statistics
Matches: 111, Mismatches: 11, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
104 30 0.27
105 18 0.16
107 7 0.06
108 15 0.14
109 26 0.23
110 13 0.12
111 2 0.02
ACGTcount: A:0.51, C:0.07, G:0.06, T:0.36
Consensus pattern (106 bp):
TAAAATATATATTTTAAATTAAAATAAATATTTAAATAATAAATAATAAATAATAAATAATAAAT
AATTAATTGGGTGGCGCCATTTAACATGACTCCACCAAAAA
Found at i:14403630 original size:7 final size:7
Alignment explanation
Indices: 14403618--14403653 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
14403608 ATTATATATT
14403618 TAAATAA
1 TAAATAA
14403625 TAAATAA
1 TAAATAA
14403632 TAAATAA
1 TAAATAA
14403639 TAAATAA
1 TAAATAA
14403646 TAAATAA
1 TAAATAA
14403653 T
1 T
14403654 TAATTGGGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TAAATAA
Found at i:14404271 original size:29 final size:29
Alignment explanation
Indices: 14404238--14404304 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
14404228 TATATTTTAA
*
14404238 GTTATTTTTGTATTTAATTAAAAAAAAGG
1 GTTATTTTTGTAATTAATTAAAAAAAAGG
** *
14404267 GTTATTTACGTAATTAATTAAAAAAAGGG
1 GTTATTTTTGTAATTAATTAAAAAAAAGG
*
14404296 GTTACTTTT
1 GTTATTTTT
14404305 ATAAAAAAGC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.43
Consensus pattern (29 bp):
GTTATTTTTGTAATTAATTAAAAAAAAGG
Found at i:14407384 original size:17 final size:17
Alignment explanation
Indices: 14407362--14407395 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14407352 TTTTTGAATA
* *
14407362 TTTTTATCAATCTTTTG
1 TTTTTATAAATATTTTG
14407379 TTTTTATAAATATTTTG
1 TTTTTATAAATATTTTG
14407396 AGAGAAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTTATAAATATTTTG
Found at i:14408213 original size:28 final size:28
Alignment explanation
Indices: 14408148--14408202 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
14408138 ATTATAGAGT
* *
14408148 AAAAATCAAGGCATTGATTTCAAAGAAG
1 AAAAATCAAAGCATTGATTTCAAACAAG
14408176 AAAAATCAAAGCATTGATTTCAAACAA
1 AAAAATCAAAGCATTGATTTCAAACAA
14408203 TAAGTGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.22
Consensus pattern (28 bp):
AAAAATCAAAGCATTGATTTCAAACAAG
Found at i:14408543 original size:26 final size:26
Alignment explanation
Indices: 14408514--14408564 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14408504 ATAGCTTTCC
*
14408514 TGTCTTTCGCTCTTTCCCTGTAAGTA
1 TGTCTTCCGCTCTTTCCCTGTAAGTA
14408540 TGTCTTCCGCTCTTTCCCTGTAAGT
1 TGTCTTCCGCTCTTTCCCTGTAAGT
14408565 GGTATCCGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.10, C:0.29, G:0.16, T:0.45
Consensus pattern (26 bp):
TGTCTTCCGCTCTTTCCCTGTAAGTA
Found at i:14409785 original size:20 final size:20
Alignment explanation
Indices: 14409749--14409786 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14409739 ATTTATGATT
*
14409749 CTTTATTTCTATCTCATTAG
1 CTTTATTTCAATCTCATTAG
*
14409769 CTTTATTTCAATTTCATT
1 CTTTATTTCAATCTCATT
14409787 TCGTATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.58
Consensus pattern (20 bp):
CTTTATTTCAATCTCATTAG
Found at i:14410042 original size:14 final size:14
Alignment explanation
Indices: 14410019--14410055 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
14410009 TTCTATTATA
14410019 TATT-TATATATTC
1 TATTATATATATTC
14410032 TATTATATATATTC
1 TATTATATATATTC
*
14410046 TAATATATAT
1 TATTATATAT
14410056 TAGAATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (14 bp):
TATTATATATATTC
Found at i:14418077 original size:23 final size:22
Alignment explanation
Indices: 14418051--14418094 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
14418041 GACTAAAATT
14418051 TTAAAATTCAAAAAATATAAAGA
1 TTAAAATTCAAAAAAT-TAAAGA
* *
14418074 TTAAAATTGATAAAATTAAAG
1 TTAAAATTCAAAAAATTAAAG
14418095 TATAGGTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (22 bp):
TTAAAATTCAAAAAATTAAAGA
Found at i:14420294 original size:29 final size:29
Alignment explanation
Indices: 14420229--14420284 Score: 96
Period size: 29 Copynumber: 1.9 Consensus size: 29
14420219 ACAATAAAAA
14420229 ATAAAAAATATTAAATTTTAATTAAAACT
1 ATAAAAAATATTAAATTTTAATTAAAACT
14420258 ATAAAAAATATTTAAATTTT-ATTAAAA
1 ATAAAAAATA-TTAAATTTTAATTAAAA
14420285 TTTAGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (29 bp):
ATAAAAAATATTAAATTTTAATTAAAACT
Found at i:14420294 original size:30 final size:29
Alignment explanation
Indices: 14420231--14420295 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
14420221 AATAAAAAAT
*
14420231 AAAAAATATTAAATTTTAATTAAAACTAT
1 AAAAAATATTAAATTTTAATTAAAACTAG
*
14420260 AAAAAATATTTAAATTTT-ATTAAAATTTAG
1 AAAAAATA-TTAAATTTTAATTAAAA-CTAG
14420290 AAAAAA
1 AAAAAA
14420296 ATATAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (29 bp):
AAAAAATATTAAATTTTAATTAAAACTAG
Found at i:14420302 original size:29 final size:30
Alignment explanation
Indices: 14420231--14420302 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 30
14420221 AATAAAAAAT
14420231 AAAAAATATTAAATTTTAATTAAAACTATAA
1 AAAAAATA-TAAATTTTAATTAAAACTATAA
* * *
14420262 AAAATATTTAAATTTT-ATTAAAA-TTTAGA
1 AAAAAATATAAATTTTAATTAAAACTATA-A
14420291 AAAAAATATAAA
1 AAAAAATATAAA
14420303 AATCGTAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 3 0.09
29 18 0.51
30 8 0.23
31 6 0.17
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (30 bp):
AAAAAATATAAATTTTAATTAAAACTATAA
Found at i:14420942 original size:90 final size:87
Alignment explanation
Indices: 14420793--14420967 Score: 215
Period size: 90 Copynumber: 2.0 Consensus size: 87
14420783 TGATGCATTT
* *
14420793 GTTCAAGTATCCAATTGAGTGAAAAAAATCAGGGGCTTAATTACTTTTTTTGAAAAAGTTTGAGG
1 GTTCAAGCACCCAATTGAGTGAAAAAAATCAGGGGCTTAATTACTTTTTTTGAAAAAGTTTGAGG
* * *
14420858 GTCTTTTTGATGCATTTTGAAA
66 GTATTTTTAATACATTTTGAAA
* * ****
14420880 GTTCAAGCACCCAATTGAGTGTAAAAAAAGTGTAGGGGCTTAATTGCTTTTTTTTTTTAAGTTTG
1 GTTCAAGCACCCAATTGAGTG-AAAAAAA-T-CAGGGGCTTAATTACTTTTTTTGAAAAAGTTTG
*
14420945 AGTGTATTTTTAATACATTTTGA
63 AGGGTATTTTTAATACATTTTGA
14420968 GAGGTTAAAT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
87 19 0.26
88 7 0.10
89 1 0.01
90 46 0.63
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (87 bp):
GTTCAAGCACCCAATTGAGTGAAAAAAATCAGGGGCTTAATTACTTTTTTTGAAAAAGTTTGAGG
GTATTTTTAATACATTTTGAAA
Found at i:14426882 original size:22 final size:22
Alignment explanation
Indices: 14426841--14426895 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
14426831 TGACTCTTTT
*
14426841 ATAATAGTAAATAATAACATATA
1 ATAATAAT-AATAATAACATATA
* *
14426864 ATAATAATAATAATTACATATC
1 ATAATAATAATAATAACATATA
14426886 ATAAT-ATAAT
1 ATAATAATAAT
14426896 TTTATGAGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 5 0.17
22 17 0.59
23 7 0.24
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (22 bp):
ATAATAATAATAATAACATATA
Done.