Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 44 of 182
Found at i:15992069 original size:21 final size:21
Alignment explanation
Indices: 15992045--15992096 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
15992035 TAGAAATAAG
* *
15992045 ACTTGTTTCGGTAGAAGAGTC
1 ACTTGTATCGGTAGAACAGTC
*
15992066 ACTTGTATCGGTAGAACTGTC
1 ACTTGTATCGGTAGAACAGTC
15992087 ACTTGTATCG
1 ACTTGTATCG
15992097 ATAAAGGTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (21 bp):
ACTTGTATCGGTAGAACAGTC
Found at i:15996870 original size:26 final size:26
Alignment explanation
Indices: 15996833--15996887 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
15996823 AAAACTATGT
* * *
15996833 AAAAATTGAAAATATTATGAAAAT-TA
1 AAAAATTAAAAAAATAAT-AAAATCTA
15996859 AAAAATTAAAAAAATAATAAAATCTA
1 AAAAATTAAAAAAATAATAAAATCTA
15996885 AAA
1 AAA
15996888 TTTAGAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (26 bp):
AAAAATTAAAAAAATAATAAAATCTA
Found at i:16005752 original size:41 final size:41
Alignment explanation
Indices: 16005707--16005802 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
16005697 GAATTTTATT
* ** *
16005707 TTAACAAGAATTCTAGTTATTCAATTCTAACAATCTCTACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
16005748 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
*
16005789 TTGACAAGAATTCT
1 TTAACAAGAATTCT
16005803 CTACGAACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (41 bp):
TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
Found at i:16005814 original size:17 final size:17
Alignment explanation
Indices: 16005792--16005830 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
16005782 CTCCACCTTG
*
16005792 ACAAGAA-TTCTCTACGA
1 ACAAGAACTT-TCAACGA
16005809 ACAAGAACTTTCAACGA
1 ACAAGAACTTTCAACGA
16005826 ACAAG
1 ACAAG
16005831 TTCTCCACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.46, C:0.23, G:0.13, T:0.18
Consensus pattern (17 bp):
ACAAGAACTTTCAACGA
Found at i:16009932 original size:21 final size:20
Alignment explanation
Indices: 16009893--16009942 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
16009883 TTCCTTTTTC
*
16009893 TCATAAAAAAGAAAGATAAT
1 TCATAAAAAAGAAAGATAAA
*
16009913 TC-TAAAAAATATAAGAATAAA
1 TCATAAAAAAGA-AAG-ATAAA
16009934 TCATAAAAA
1 TCATAAAAA
16009943 TTCAATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 8 0.32
20 5 0.20
21 6 0.24
22 6 0.24
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.22
Consensus pattern (20 bp):
TCATAAAAAAGAAAGATAAA
Found at i:16009980 original size:2 final size:2
Alignment explanation
Indices: 16009975--16010010 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
16009965 TCTAAAACCT
16009975 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16010011 AAATTAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:16010154 original size:22 final size:23
Alignment explanation
Indices: 16010120--16010162 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
16010110 GAAAATGATC
16010120 TTCAAAAATTCTATAAAAATACT
1 TTCAAAAATTCTATAAAAATACT
*
16010143 TTCAAAAA-TCTATAATAATA
1 TTCAAAAATTCTATAAAAATA
16010163 AAGATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (23 bp):
TTCAAAAATTCTATAAAAATACT
Found at i:16010220 original size:20 final size:17
Alignment explanation
Indices: 16010153--16010237 Score: 62
Period size: 17 Copynumber: 4.8 Consensus size: 17
16010143 TTCAAAAATC
* * *
16010153 TATAATAATAAAGATAA
1 TATAAAAATAAAAATAT
* * * *
16010170 TATATAATTATAAATTT
1 TATAAAAATAAAAATAT
* *
16010187 TAAAAAAATCAAAATAAT
1 TATAAAAATAAAAAT-AT
16010205 ATATAAAAATTAAAAATAT
1 -TATAAAAA-TAAAAATAT
16010224 TATAAAAATAAAAA
1 TATAAAAATAAAAA
16010238 AACATTTAAA
Statistics
Matches: 50, Mismatches: 15, Indels: 6
0.70 0.21 0.08
Matches are distributed among these distances:
17 26 0.52
18 9 0.18
19 9 0.18
20 6 0.12
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (17 bp):
TATAAAAATAAAAATAT
Found at i:16010238 original size:18 final size:17
Alignment explanation
Indices: 16010190--16010238 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 17
16010180 TAAATTTTAA
16010190 AAAAATCAAAATAATATAT
1 AAAAAT-AAAA-AATATAT
*
16010209 AAAAATTAAAAATATTAT
1 AAAAATAAAAAATA-TAT
16010227 AAAAATAAAAAA
1 AAAAATAAAAAA
16010239 ACATTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 4 0.15
18 17 0.63
19 6 0.22
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATAAAAAATATAT
Found at i:16010239 original size:20 final size:18
Alignment explanation
Indices: 16010190--16010239 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
16010180 TAAATTTTAA
*
16010190 AAAAATCAAAATAATATAT
1 AAAAAT-AAAAAAATATAT
*
16010209 AAAAAT-TAAAAATATTAT
1 AAAAATAAAAAAATA-TAT
16010227 AAAAATAAAAAAA
1 AAAAATAAAAAAA
16010240 CATTTAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 6 0.23
18 9 0.35
19 11 0.42
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAATAAAAAAATATAT
Found at i:16012352 original size:4 final size:4
Alignment explanation
Indices: 16012340--16012393 Score: 72
Period size: 4 Copynumber: 12.5 Consensus size: 4
16012330 AGAACAAAAA
16012340 AAAG AAAAG AAAG AAAG AAAAG AAAG AAAAG AAAG AAAAG AAAG AAAG
1 AAAG -AAAG AAAG AAAG -AAAG AAAG -AAAG AAAG -AAAG AAAG AAAG
16012388 AAAG AA
1 AAAG AA
16012394 GGAAGAAGGA
Statistics
Matches: 46, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
4 30 0.65
5 16 0.35
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:16012352 original size:9 final size:9
Alignment explanation
Indices: 16012339--16012416 Score: 88
Period size: 9 Copynumber: 8.6 Consensus size: 9
16012329 CAGAACAAAA
16012339 AAAAGAAA-
1 AAAAGAAAG
16012347 AGAAAGAAAG
1 A-AAAGAAAG
16012357 AAAAGAAAG
1 AAAAGAAAG
16012366 AAAAGAAAG
1 AAAAGAAAG
16012375 AAAAGAAAG
1 AAAAGAAAG
16012384 -AAAGAAAG
1 AAAAGAAAG
*
16012392 AAGGAAGAAGG
1 AA--AAGAAAG
* *
16012403 AGAAGAAGG
1 AAAAGAAAG
16012412 AAAAG
1 AAAAG
16012417 GATAGTAAGG
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
8 9 0.15
9 45 0.73
10 1 0.02
11 7 0.11
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:16012358 original size:13 final size:13
Alignment explanation
Indices: 16012340--16012416 Score: 77
Period size: 13 Copynumber: 5.7 Consensus size: 13
16012330 AGAACAAAAA
16012340 AAAGAAAAGAAAG
1 AAAGAAAAGAAAG
16012353 AAAGAAAAGAAAG
1 AAAGAAAAGAAAG
16012366 AAA-AGAAAGAAAAG
1 AAAGA-AAAG-AAAG
16012380 AAAG-AAAGAAAG
1 AAAGAAAAGAAAG
*
16012392 AAGGAAGAAGGAGAAG
1 AAAGAA-AA-GA-AAG
*
16012408 AAGGAAAAG
1 AAAGAAAAG
16012417 GATAGTAAGG
Statistics
Matches: 56, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
12 8 0.14
13 25 0.45
14 10 0.18
15 4 0.07
16 9 0.16
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAAAG
Found at i:16012410 original size:16 final size:15
Alignment explanation
Indices: 16012389--16012418 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
16012379 GAAAGAAAGA
16012389 AAGAAGGAAGAAGGAG
1 AAGAAGGAA-AAGGAG
16012405 AAGAAGGAAAAGGA
1 AAGAAGGAAAAGGA
16012419 TAGTAAGGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (15 bp):
AAGAAGGAAAAGGAG
Found at i:16012756 original size:21 final size:21
Alignment explanation
Indices: 16012730--16012770 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
16012720 TAATTTACTT
16012730 TAATTTAATTTTGTTAGTAAG
1 TAATTTAATTTTGTTAGTAAG
*
16012751 TAATTTTATTTTGTTAGTAA
1 TAATTTAATTTTGTTAGTAA
16012771 TAGTAAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (21 bp):
TAATTTAATTTTGTTAGTAAG
Found at i:16013263 original size:30 final size:30
Alignment explanation
Indices: 16013229--16013323 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
16013219 AAATGGTACA
16013229 AAATAAATATTTATTTTGTACCATTTTAGT
1 AAATAAATATTTATTTTGTACCATTTTAGT
** * * * *
16013259 AAAT-AAT-GGTGTGTGGATACCATTTTGGT
1 AAATAAATATTTATTTTG-TACCATTTTAGT
* *
16013288 ATATAAATATTTATTGTGTACCATTTTAGT
1 AAATAAATATTTATTTTGTACCATTTTAGT
16013318 AAATAA
1 AAATAA
16013324 CCTATTTTGG
Statistics
Matches: 47, Mismatches: 15, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
28 4 0.09
29 17 0.36
30 23 0.49
31 3 0.06
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (30 bp):
AAATAAATATTTATTTTGTACCATTTTAGT
Found at i:16014593 original size:43 final size:43
Alignment explanation
Indices: 16014511--16014595 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
16014501 ATTAACATGT
* *
16014511 TAAATTATATTACTTGACTCATGTTAATATGGTTGCATGTTAC
1 TAAATTATATTACTTGACTCATATTAATATGCTTGCATGTTAC
* **
16014554 TAAATTATATTACTTTACTTTTATTAATAT-CTTGACATGTTA
1 TAAATTATATTACTTGACTCATATTAATATGCTTG-CATGTTA
16014596 TTAATTGTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (43 bp):
TAAATTATATTACTTGACTCATATTAATATGCTTGCATGTTAC
Found at i:16016333 original size:20 final size:20
Alignment explanation
Indices: 16016284--16016322 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
16016274 ACAACCTTTT
*
16016284 TCTCCTTCTTCTTTCTTTCC
1 TCTCCTTCTTCCTTCTTTCC
16016304 TCTCCTTCTTCCTTCTTTC
1 TCTCCTTCTTCCTTCTTTC
16016323 TTTTCTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (20 bp):
TCTCCTTCTTCCTTCTTTCC
Found at i:16016342 original size:24 final size:24
Alignment explanation
Indices: 16016289--16016344 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
16016279 CTTTTTCTCC
16016289 TTCTTCTTTCTTTCCTCTCCTTCT
1 TTCTTCTTTCTTTCCTCTCCTTCT
* * * * *
16016313 TCCTTCTTTCTTTTCTTTCTTTTT
1 TTCTTCTTTCTTTCCTCTCCTTCT
16016337 TTCTTCTT
1 TTCTTCTT
16016345 CTGCTCATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (24 bp):
TTCTTCTTTCTTTCCTCTCCTTCT
Found at i:16023438 original size:26 final size:26
Alignment explanation
Indices: 16023383--16023438 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
16023373 TTCAGTTTCC
* * **
16023383 AAAAAAATTCTGTAAATTTTATTTTT
1 AAAAAAATTCTGAAAATTTTATATAA
16023409 AAAAAAATTCTGAAAATATTT-TATAA
1 AAAAAAATTCTGAAAAT-TTTATATAA
16023435 AAAA
1 AAAA
16023439 TTATTTTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.39
Consensus pattern (26 bp):
AAAAAAATTCTGAAAATTTTATATAA
Found at i:16037596 original size:3 final size:3
Alignment explanation
Indices: 16037588--16037619 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
16037578 CCAAAATCAA
16037588 AAT AAT AAT AAT AAT AAT AA- AAT AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
16037620 TAAATTTTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:16042430 original size:12 final size:12
Alignment explanation
Indices: 16042412--16042442 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
16042402 CTTGTATTAA
16042412 AATTTTTTATAT
1 AATTTTTTATAT
*
16042424 TATTTTTTATAT
1 AATTTTTTATAT
16042436 AATTTTT
1 AATTTTT
16042443 AAAAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
AATTTTTTATAT
Found at i:16046878 original size:15 final size:15
Alignment explanation
Indices: 16046858--16046887 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16046848 TGTTCAGGAC
16046858 CTTGAGAATTGACTG
1 CTTGAGAATTGACTG
*
16046873 CTTGAGAGTTGACTG
1 CTTGAGAATTGACTG
16046888 GGGTTGTACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.30, T:0.33
Consensus pattern (15 bp):
CTTGAGAATTGACTG
Found at i:16050078 original size:8 final size:8
Alignment explanation
Indices: 16050058--16050091 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
16050048 TGACACAATA
16050058 TACATT-T
1 TACATTGT
16050065 TAACATTGT
1 T-ACATTGT
16050074 TACATTGT
1 TACATTGT
16050082 TACATTGT
1 TACATTGT
16050090 TA
1 TA
16050092 AGTTGTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 1 0.04
8 22 0.88
9 2 0.08
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (8 bp):
TACATTGT
Found at i:16050935 original size:15 final size:17
Alignment explanation
Indices: 16050899--16050935 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
16050889 TTTTTACAGA
*
16050899 AGTCAACAACATATCGC
1 AGTCAACAACATATCAC
16050916 AGTCAACAACAT-T-AC
1 AGTCAACAACATATCAC
16050931 AGTCA
1 AGTCA
16050936 TACATTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 1 0.05
17 12 0.63
ACGTcount: A:0.43, C:0.27, G:0.11, T:0.19
Consensus pattern (17 bp):
AGTCAACAACATATCAC
Found at i:16051427 original size:189 final size:189
Alignment explanation
Indices: 16051107--16051492 Score: 664
Period size: 189 Copynumber: 2.0 Consensus size: 189
16051097 CCAGACAGTC
* *
16051107 AGACCACAATATAATATCAACATATTCCAACATTTTCAGGAAATACAAATGAACTGATGACTTAC
1 AGACCACAATATAATATCAACATATTCCAACATTTTAAGGAAATACAAATGAACTGATGACTAAC
* *
16051172 CTTTGATGATTCAACAATAGATTACTCTAAAAAACGAACCATCAACCGAACCTGCAAACAAAAAA
66 CTTTGATAATTCAACAATAGATTACTCCAAAAAACGAACCATCAACCGAACCTGCAAACAAAAAA
* * * *
16051237 AAGCATAGGGTTAGAAATAATCAAATATACTCACATTCTACCCTTACCCACTTGGTTTT
131 AAGCATACGGTTAGAAACAATCAAATATACTCACATTCTACCCCTACCCACTGGGTTTT
16051296 AGACCACAATATAATATCAACATATTCCAACATTTTAAGGAAATACAAATGAACTGATGACTAAC
1 AGACCACAATATAATATCAACATATTCCAACATTTTAAGGAAATACAAATGAACTGATGACTAAC
* * *
16051361 CTTTGATAATTCAACAATAGATTACTCCAGAAAATGAACCGTCAACCGAACCTGCAAACAAAAAA
66 CTTTGATAATTCAACAATAGATTACTCCAAAAAACGAACCATCAACCGAACCTGCAAACAAAAAA
*
16051426 AAGCATACGGTTAGAAACAATCAAATATACTCACATTGTACCCCTACCCACTGGGTTTT
131 AAGCATACGGTTAGAAACAATCAAATATACTCACATTCTACCCCTACCCACTGGGTTTT
16051485 AGACCACA
1 AGACCACA
16051493 TGTATGAATT
Statistics
Matches: 185, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
189 185 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (189 bp):
AGACCACAATATAATATCAACATATTCCAACATTTTAAGGAAATACAAATGAACTGATGACTAAC
CTTTGATAATTCAACAATAGATTACTCCAAAAAACGAACCATCAACCGAACCTGCAAACAAAAAA
AAGCATACGGTTAGAAACAATCAAATATACTCACATTCTACCCCTACCCACTGGGTTTT
Found at i:16057157 original size:28 final size:28
Alignment explanation
Indices: 16057104--16057157 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
16057094 TTTAAAAGAT
*
16057104 AAAATTATGAAAATAATTCTTGTCAAAA
1 AAAATTATGAAAATAATTCTTATCAAAA
*
16057132 AAAATTATGAAAATAATTTTTATCAA
1 AAAATTATGAAAATAATTCTTATCAA
16057158 TTTAAAATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.35
Consensus pattern (28 bp):
AAAATTATGAAAATAATTCTTATCAAAA
Found at i:16060560 original size:10 final size:10
Alignment explanation
Indices: 16060545--16060581 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
16060535 AATTTAAATT
16060545 ATATATATAA
1 ATATATATAA
16060555 ATATATATAA
1 ATATATATAA
*
16060565 AT-CAT-TAA
1 ATATATATAA
16060573 ATATATATA
1 ATATATATA
16060582 TTTTTGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
8 5 0.22
9 4 0.17
10 14 0.61
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATAA
Found at i:16061560 original size:18 final size:18
Alignment explanation
Indices: 16061537--16061573 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
16061527 AGGTAGACGA
*
16061537 AAACGTACCATAAGGCAT
1 AAACGTACCACAAGGCAT
*
16061555 AAACGTGCCACAAGGCAT
1 AAACGTACCACAAGGCAT
16061573 A
1 A
16061574 GGAAAAGCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.24, G:0.19, T:0.14
Consensus pattern (18 bp):
AAACGTACCACAAGGCAT
Found at i:16061620 original size:17 final size:17
Alignment explanation
Indices: 16061595--16061640 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
16061585 CTGCAAAGGC
*
16061595 AAATAAAAACTAGAAGA
1 AAATAAAAACTAAAAGA
16061612 AAATTAAAATA-TAAAAGA
1 AAA-TAAAA-ACTAAAAGA
16061630 AAATAAAAACT
1 AAATAAAAACT
16061641 GAATATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
16 1 0.04
17 9 0.36
18 14 0.56
19 1 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.17
Consensus pattern (17 bp):
AAATAAAAACTAAAAGA
Found at i:16062738 original size:14 final size:14
Alignment explanation
Indices: 16062716--16062747 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
16062706 CCCAACGGTC
16062716 AAATGAAAAAATAA
1 AAATGAAAAAATAA
*
16062730 AAATTAAAAAATAA
1 AAATGAAAAAATAA
16062744 AAAT
1 AAAT
16062748 ATTTATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (14 bp):
AAATGAAAAAATAA
Found at i:16062801 original size:20 final size:20
Alignment explanation
Indices: 16062776--16062815 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
16062766 CTCCCCTTTT
16062776 ATTTTTCACTCAATTCTCTC
1 ATTTTTCACTCAATTCTCTC
* *
16062796 ATTTTTCTCTCAATTTTCTC
1 ATTTTTCACTCAATTCTCTC
16062816 TCAAGAAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTTTCACTCAATTCTCTC
Found at i:16062805 original size:11 final size:11
Alignment explanation
Indices: 16062789--16062819 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
16062779 TTTCACTCAA
*
16062789 TTCTCTCATTT
1 TTCTCTCAATT
16062800 TTCTCTCAATT
1 TTCTCTCAATT
16062811 TTCTCTCAA
1 TTCTCTCAA
16062820 GAAACTCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.16, C:0.29, G:0.00, T:0.55
Consensus pattern (11 bp):
TTCTCTCAATT
Found at i:16062962 original size:21 final size:21
Alignment explanation
Indices: 16062938--16063022 Score: 64
Period size: 21 Copynumber: 3.9 Consensus size: 21
16062928 GTTAATTTTA
16062938 ATTTTTTAATATTATTTATTT
1 ATTTTTTAATATTATTTATTT
* * *
16062959 ATTTATTTATTTTTATAATTTACTT
1 ATTT-TTTA---ATATTATTTATTT
* *
16062984 ATTTTTTAATAATATTTAATT
1 ATTTTTTAATATTATTTATTT
* *
16063005 ATTTTATATTATT-TTTAT
1 ATTTTTTAATATTATTTAT
16063023 AACTTAATTA
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
20 4 0.08
21 23 0.47
22 4 0.08
24 4 0.08
25 14 0.29
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTTTTAATATTATTTATTT
Found at i:16062985 original size:17 final size:16
Alignment explanation
Indices: 16062938--16062993 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
16062928 GTTAATTTTA
16062938 ATTTTTTAA--TA-TT
1 ATTTTTTAATTTACTT
*
16062951 ATTTATTT-ATTTATTT
1 ATTT-TTTAATTTACTT
16062967 ATTTTTATAATTTACTT
1 ATTTTT-TAATTTACTT
16062984 ATTTTTTAAT
1 ATTTTTTAAT
16062994 AATATTTAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 5 0.14
14 3 0.08
15 4 0.11
16 11 0.31
17 13 0.36
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTTAATTTACTT
Found at i:16063000 original size:46 final size:49
Alignment explanation
Indices: 16062935--16063039 Score: 153
Period size: 46 Copynumber: 2.2 Consensus size: 49
16062925 AGAGTTAATT
* * * *
16062935 TTAATTTTTTAATATTATTTATTTA-TTTAT-TTATTTTTATAATTTAC
1 TTAATTTTTTAATAATATTTAATTATTTTATATTATTTTTATAACTTAA
16062982 TT-ATTTTTTAATAATATTTAATTATTTTATATTATTTTTATAACTTAA
1 TTAATTTTTTAATAATATTTAATTATTTTATATTATTTTTATAACTTAA
16063030 TTAATTTTTT
1 TTAATTTTTT
16063040 TGAATAGCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
46 20 0.39
47 7 0.14
48 17 0.33
49 7 0.14
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (49 bp):
TTAATTTTTTAATAATATTTAATTATTTTATATTATTTTTATAACTTAA
Found at i:16064810 original size:18 final size:19
Alignment explanation
Indices: 16064769--16064810 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
16064759 CGGGGAGCAA
*
16064769 CTCAATTCCAATCGCCATC
1 CTCAATACCAATCGCCATC
16064788 C-CAATACCAATCGCCA-C
1 CTCAATACCAATCGCCATC
16064805 CTCAAT
1 CTCAAT
16064811 TTCCACCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 2 0.10
18 18 0.86
19 1 0.05
ACGTcount: A:0.31, C:0.43, G:0.05, T:0.21
Consensus pattern (19 bp):
CTCAATACCAATCGCCATC
Found at i:16064821 original size:15 final size:15
Alignment explanation
Indices: 16064801--16064832 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
16064791 ATACCAATCG
16064801 CCACCTCAATTTCCA
1 CCACCTCAATTTCCA
16064816 CCACCTCAATTTCCA
1 CCACCTCAATTTCCA
16064831 CC
1 CC
16064833 GCCTTATGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.50, G:0.00, T:0.25
Consensus pattern (15 bp):
CCACCTCAATTTCCA
Found at i:16065679 original size:20 final size:22
Alignment explanation
Indices: 16065638--16065696 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
16065628 AATAATGACT
*
16065638 ATTTAACAATAAATAA-TAAAT-
1 ATTTAATAA-AAATAATTAAATA
16065659 ATTT-ATAAAAATAATTAAATA
1 ATTTAATAAAAATAATTAAATA
16065680 ATTTGAATAAAAATAAT
1 ATTT-AATAAAAATAAT
16065697 AATTCTTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 6 0.18
20 8 0.24
21 8 0.24
23 11 0.33
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
ATTTAATAAAAATAATTAAATA
Found at i:16065835 original size:143 final size:141
Alignment explanation
Indices: 16065688--16065987 Score: 503
Period size: 143 Copynumber: 2.1 Consensus size: 141
16065678 TAATTTGAAT
* *
16065688 AAAAATAATAATTCTTTCAGTATGTTATAGGTTTTTTTCCCTAAAATATATAAAATAAATACTAA
1 AAAAATAATAATTCTTTCAATATGTTATAGGTTTTTTCCCCTAAAATATATAAAATAAATACTAA
*
16065753 AATTGTAATTTAACAATAAATAATAAATTTTCAATAAATAATTAAATAATTTGAATAAAAATAAT
66 AATTGTAATTTAACAATAAATAATAAATTTTCAATAAATAATTAAATAATTTGAATAAAAATAAA
16065818 ACAGAAAAAAATA
131 ACAG--AAAAATA
* *
16065831 AAAAATAAAAATTCTTTCAATATGTTATGGGTTTTTTCCCCTAAAATATATAAAATAAATACTAA
1 AAAAATAATAATTCTTTCAATATGTTATAGGTTTTTTCCCCTAAAATATATAAAATAAATACTAA
* *
16065896 AATTGTAATTTAACGATAAATAATAAATTTTTAATAAATAATTAAATAATTTGAATAAAAATAAA
66 AATTGTAATTTAACAATAAATAATAAATTTTCAATAAATAATTAAATAATTTGAATAAAAATAAA
16065961 ACAGAAAAATA
131 ACAGAAAAATA
*
16065972 AAAAA-ATTAATTCTTT
1 AAAAATAATAATTCTTT
16065988 TTTACCTAAA
Statistics
Matches: 148, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
140 9 0.06
141 12 0.08
143 127 0.86
ACGTcount: A:0.53, C:0.06, G:0.05, T:0.36
Consensus pattern (141 bp):
AAAAATAATAATTCTTTCAATATGTTATAGGTTTTTTCCCCTAAAATATATAAAATAAATACTAA
AATTGTAATTTAACAATAAATAATAAATTTTCAATAAATAATTAAATAATTTGAATAAAAATAAA
ACAGAAAAATA
Found at i:16065956 original size:122 final size:122
Alignment explanation
Indices: 16065870--16066233 Score: 404
Period size: 122 Copynumber: 2.8 Consensus size: 122
16065860 GGTTTTTTCC
* *
16065870 CCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACGATAAATAATAAATTTTTAATAAAT
1 CCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAATTTTCAATAAAT
* *
16065935 AATTAAATAATTTGAATAAAAATAAAACAGAAAAATAAAAAAATTAATTCTTTTTTA
66 AATTAAATAAGTTGAATAAAAATAAAACAGAAAAATAAAAAAATTAATGCTTTTTTA
16065992 CCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAATTTTCAATAAAT
1 CCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAATTTTCAATAAAT
* * * * *
16066057 AATTAAATAAGTTGAATAAAACTAAATAGAAAAAAATAAATAAATTTAATTCTTTCAATTTGTTA
66 AATTAAATAAGTTGAATAAAAATAAA-ACAGAAAAATAAA-AAAATTAATGC--T---TTT-TT-
16066122 GGA
122 --A
** * * *
16066125 GTTTTTTTACCTAAAATAAATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAAATT
1 -----CCTA--AAATAT--ATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAATTT
* *
16066190 TCAATAAATAATTAATTAATTTGAATAAAAATAAAACAGAAAAA
57 TCAATAAATAATTAAATAAGTTGAATAAAAATAAAACAGAAAAA
16066234 AATTAAAATA
Statistics
Matches: 205, Mismatches: 17, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
122 87 0.42
123 11 0.05
124 10 0.05
126 1 0.00
129 3 0.01
130 2 0.01
133 1 0.00
138 2 0.01
140 4 0.02
141 7 0.03
142 77 0.38
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (122 bp):
CCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAATTTTCAATAAAT
AATTAAATAAGTTGAATAAAAATAAAACAGAAAAATAAAAAAATTAATGCTTTTTTA
Found at i:16065958 original size:264 final size:264
Alignment explanation
Indices: 16065638--16066233 Score: 853
Period size: 264 Copynumber: 2.3 Consensus size: 264
16065628 AATAATGACT
* *
16065638 ATTTAACAATAAATAATAAATATTTATAA-AAATAATTAAATAATTTGAATAAAAATAATA-A-T
1 ATTTAACAATAAATAATAAAT-TTT-TAATAAATAATTAAATAATTTGAATAAAAATAAAACAGA
**** * ** ** *
16065700 TCTTTCAGTATGTTATAGGT-TTTTTTCCCTAAAATATATAAAATAAATACTAAAATTGTAATTT
64 AAAATAAAAAAATTA-A-GTCTTTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTT
*
16065764 AACAATAAATAATAAATTTTCAATAAATAATTAAATAATTTGAATAAAAATAATACAGAAAAAAA
127 AACAATAAATAATAAATTTTCAATAAATAATTAAATAAGTTGAATAAAAATAA-ACAGAAAAAAA
* *
16065829 TAAA-AAATAAAAATTCTTTCAATATGTTATGG-GTTTTTTCCCCTAAAATATATAAAATAAATA
191 TAAATAAAT-AAAATTCTTTCAATATGTTA-GGAGTTTTTTCACCTAAAATAAATAAAATAAATA
16065892 CTAAAATTGTA
254 CTAAAATTGTA
*
16065903 ATTTAACGATAAATAATAAATTTTTAATAAATAATTAAATAATTTGAATAAAAATAAAACAGAAA
1 ATTTAACAATAAATAATAAATTTTTAATAAATAATTAAATAATTTGAATAAAAATAAAACAGAAA
*
16065968 AATAAAAAAATTAATTCTTTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACA
66 AATAAAAAAATTAAGTCTTTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACA
* *
16066033 ATAAATAATAAATTTTCAATAAATAATTAAATAAGTTGAATAAAACTAAATAGAAAAAAATAAAT
131 ATAAATAATAAATTTTCAATAAATAATTAAATAAGTTGAATAAAAATAAACAGAAAAAAATAAAT
** * *
16066098 AAATTTAATTCTTTCAATTTGTTAGGAGTTTTTTTACCTAAAATAAATAAAATAAATACTAAAAT
196 AAATAAAATTCTTTCAATATGTTAGGAGTTTTTTCACCTAAAATAAATAAAATAAATACTAAAAT
16066163 TGTA
261 TGTA
* * *
16066167 ATTTAACAATAAATAATAAAATTTCAATAAATAATTAATTAATTTGAATAAAAATAAAACAGAAA
1 ATTTAACAATAAATAATAAATTTTTAATAAATAATTAAATAATTTGAATAAAAATAAAACAGAAA
16066232 AA
66 AA
16066234 AATTAAAATA
Statistics
Matches: 298, Mismatches: 27, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
263 5 0.02
264 167 0.56
265 120 0.40
266 6 0.02
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.35
Consensus pattern (264 bp):
ATTTAACAATAAATAATAAATTTTTAATAAATAATTAAATAATTTGAATAAAAATAAAACAGAAA
AATAAAAAAATTAAGTCTTTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACA
ATAAATAATAAATTTTCAATAAATAATTAAATAAGTTGAATAAAAATAAACAGAAAAAAATAAAT
AAATAAAATTCTTTCAATATGTTAGGAGTTTTTTCACCTAAAATAAATAAAATAAATACTAAAAT
TGTA
Found at i:16066142 original size:142 final size:145
Alignment explanation
Indices: 16065985--16066316 Score: 553
Period size: 142 Copynumber: 2.3 Consensus size: 145
16065975 AAATTAATTC
*
16065985 TTTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAATTTTC
1 TTTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAAATTTC
* *
16066050 AATAAATAATTAAATAAGTTGAATAAAACT-AAATAGAAAAAAA-T-AAATAAATTTAATTCTTT
66 AATAAATAATTAAATAAGTTGAATAAAAATAAAACAGAAAAAAATTAAAATAAATTTAATTCTTT
16066112 CAATTTGTTAGGAGT
131 CAATTTGTTAGGAGT
*
16066127 TTTTTTACCTAAAATAAATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAAATTTC
1 TTTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAAATTTC
* *
16066192 AATAAATAATTAATTAATTTGAATAAAAATAAAACAGAAAAAAATTAAAATAAATTTAATTCTTT
66 AATAAATAATTAAATAAGTTGAATAAAAATAAAACAGAAAAAAATTAAAATAAATTTAATTCTTT
*
16066257 CAATTTGTTATGAGT
131 CAATTTGTTAGGAGT
* *
16066272 TGTTTTTACCTAAAATATATAAAATAAATACTAAAACTCTAATTT
1 T-TTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTT
16066317 TAAAAACATA
Statistics
Matches: 176, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
142 90 0.51
143 12 0.07
144 1 0.01
145 33 0.19
146 40 0.23
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.37
Consensus pattern (145 bp):
TTTTTTACCTAAAATATATAAAATAAATACTAAAATTGTAATTTAACAATAAATAATAAAATTTC
AATAAATAATTAAATAAGTTGAATAAAAATAAAACAGAAAAAAATTAAAATAAATTTAATTCTTT
CAATTTGTTAGGAGT
Found at i:16066216 original size:21 final size:18
Alignment explanation
Indices: 16066173--16066225 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 18
16066163 TGTAATTTAA
16066173 CAATAAATAATAAAATTT
1 CAATAAATAATAAAATTT
16066191 CAATAAATAATTAATTAATTT
1 CAATAAATAA-TAA--AATTT
*
16066212 GAATAAA-AATAAAA
1 CAATAAATAATAAAA
16066226 CAGAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 2 0.06
18 10 0.32
19 6 0.19
20 2 0.06
21 11 0.35
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (18 bp):
CAATAAATAATAAAATTT
Found at i:16066376 original size:20 final size:20
Alignment explanation
Indices: 16066305--16066377 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
16066295 ATAAATACTA
*
16066305 AAACTCTAATTTTAAAAACAT
1 AAAC-CTAATTTTAAAAACCT
*
16066326 AAACCCTAA-CTTAAAAATCCT
1 AAA-CCTAATTTTAAAAA-CCT
* *
16066347 ATATCCTAATTTTAAAACCCT
1 A-AACCTAATTTTAAAAACCT
16066368 AAACCTAATT
1 AAACCTAATT
16066378 AAAACTCTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
20 15 0.36
21 19 0.45
22 8 0.19
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.32
Consensus pattern (20 bp):
AAACCTAATTTTAAAAACCT
Found at i:16070901 original size:17 final size:19
Alignment explanation
Indices: 16070866--16070905 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
16070856 AATAAATGAA
16070866 ATAAAAATATATCAATAAT
1 ATAAAAATATATCAATAAT
*
16070885 ATAAAAATA-AT-ATTAAT
1 ATAAAAATATATCAATAAT
16070902 ATAA
1 ATAA
16070906 TATTCTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 2 0.10
19 9 0.45
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAAAATATATCAATAAT
Found at i:16070936 original size:12 final size:12
Alignment explanation
Indices: 16070919--16070984 Score: 59
Period size: 12 Copynumber: 5.7 Consensus size: 12
16070909 TCTAATTTAT
16070919 TATAAATAAATA
1 TATAAATAAATA
16070931 TATAAATAAAT-
1 TATAAATAAATA
* *
16070942 TCT-AATATATA
1 TATAAATAAATA
*
16070953 T-TAGAATATATA
1 TATA-AATAAATA
16070965 TAT-AATAGAATA
1 TATAAATA-AATA
16070977 TATAAATA
1 TATAAATA
16070985 TATAATAGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
10 7 0.16
11 7 0.16
12 26 0.58
13 5 0.11
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (12 bp):
TATAAATAAATA
Found at i:16070965 original size:14 final size:15
Alignment explanation
Indices: 16070946--16070991 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
16070936 ATAAATTCTA
16070946 ATATATAT-TAGAAT
1 ATATATATATAGAAT
16070960 ATATATATAATAGAAT
1 ATATATAT-ATAGAAT
* *
16070976 ATATAAATATATAAT
1 ATATATATATAGAAT
16070991 A
1 A
16070992 GAATTAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 8 0.29
15 7 0.25
16 13 0.46
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (15 bp):
ATATATATATAGAAT
Found at i:16070965 original size:16 final size:16
Alignment explanation
Indices: 16070946--16070985 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
16070936 ATAAATTCTA
16070946 ATATATATTAGAATAT
1 ATATATATTAGAATAT
*
16070962 ATATATAATAGAATAT
1 ATATATATTAGAATAT
*
16070978 ATAAATAT
1 ATATATAT
16070986 ATAATAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (16 bp):
ATATATATTAGAATAT
Found at i:16071044 original size:26 final size:26
Alignment explanation
Indices: 16070986--16071044 Score: 61
Period size: 26 Copynumber: 2.3 Consensus size: 26
16070976 ATATAAATAT
*
16070986 ATAATAGAATTAATATTCTAACATCTA
1 ATAATA-AATTAATATTATAACATCTA
16071013 AT-ATAAATTATATATTATAAGC-TC-A
1 ATAATAAATTA-ATATTATAA-CATCTA
16071038 ATAATAA
1 ATAATAA
16071045 GAAATAAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 8 0.29
26 17 0.61
27 3 0.11
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.37
Consensus pattern (26 bp):
ATAATAAATTAATATTATAACATCTA
Found at i:16074445 original size:15 final size:15
Alignment explanation
Indices: 16074425--16074455 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
16074415 CTGTATCAGT
16074425 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
16074440 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
16074455 A
1 A
16074456 CGGAACCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (15 bp):
AATGAATCAGAGCAC
Found at i:16075351 original size:16 final size:16
Alignment explanation
Indices: 16075330--16075360 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16075320 CAGAATCTCA
*
16075330 TATATATATATATAAC
1 TATATATAGATATAAC
16075346 TATATATAGATATAA
1 TATATATAGATATAA
16075361 AAATAGATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (16 bp):
TATATATAGATATAAC
Found at i:16075588 original size:17 final size:17
Alignment explanation
Indices: 16075553--16075589 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
16075543 GTTTTGGATT
*
16075553 TATATAGTATTATACTA
1 TATATAGTATAATACTA
16075570 TATATAGTATAA-A-TA
1 TATATAGTATAATACTA
16075585 TATAT
1 TATAT
16075590 TTATACTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 1 0.05
17 11 0.58
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (17 bp):
TATATAGTATAATACTA
Found at i:16079452 original size:18 final size:18
Alignment explanation
Indices: 16079429--16079463 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
16079419 ATTAGGATGC
*
16079429 CCCTCCTTCCCCCTTTTT
1 CCCTCCTCCCCCCTTTTT
16079447 CCCTCCTCCCCCCTTTT
1 CCCTCCTCCCCCCTTTT
16079464 CCCCCCCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (18 bp):
CCCTCCTCCCCCCTTTTT
Found at i:16079458 original size:17 final size:18
Alignment explanation
Indices: 16079429--16079466 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
16079419 ATTAGGATGC
*
16079429 CCCTCCTTCCCCCTTTTT
1 CCCTCCTTCCCCCCTTTT
16079447 CCCTCC-TCCCCCCTTTT
1 CCCTCCTTCCCCCCTTTT
16079464 CCC
1 CCC
16079467 CCCCTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (18 bp):
CCCTCCTTCCCCCCTTTT
Found at i:16079472 original size:18 final size:18
Alignment explanation
Indices: 16079437--16079472 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
16079427 GCCCCTCCTT
* *
16079437 CCCCCTTTTTCCCTCCTC
1 CCCCCTTTTCCCCCCCTC
16079455 CCCCCTTTTCCCCCCCTC
1 CCCCCTTTTCCCCCCCTC
16079473 TTTTCCCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (18 bp):
CCCCCTTTTCCCCCCCTC
Found at i:16079504 original size:18 final size:18
Alignment explanation
Indices: 16079481--16079523 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
16079471 TCTTTTCCCC
*
16079481 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
*
16079499 TTCTTTCGTTTATTTATT
1 TTCTTTCATTTATTTATT
*
16079517 TGCTTTC
1 TTCTTTC
16079524 TTTTTATGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:16080181 original size:15 final size:17
Alignment explanation
Indices: 16080161--16080192 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
16080151 TCATTTCATT
16080161 TATAT-AATG-ATAAAA
1 TATATAAATGCATAAAA
16080176 TATATAAATGCATAAAA
1 TATATAAATGCATAAAA
16080193 AGATTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 4 0.27
17 6 0.40
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (17 bp):
TATATAAATGCATAAAA
Found at i:16082994 original size:33 final size:33
Alignment explanation
Indices: 16082918--16082994 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 33
16082908 CCTATTTACT
* * * ** *
16082918 TAAAATAAATAATTTTAGTCAAAATGAAATTAG
1 TAAAATAAACAAATTTAATCAAAACAAAATTAA
*
16082951 GAAAAT-AACAAATTTAATCAAAACAAAATTAA
1 TAAAATAAACAAATTTAATCAAAACAAAATTAA
16082983 TAAAATAAACAA
1 TAAAATAAACAA
16082995 CTTTGACTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
32 25 0.71
33 10 0.29
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.26
Consensus pattern (33 bp):
TAAAATAAACAAATTTAATCAAAACAAAATTAA
Found at i:16083783 original size:19 final size:20
Alignment explanation
Indices: 16083759--16083797 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
16083749 GTAACCAAGT
16083759 CTAA-TTTATTTATTCACAA
1 CTAATTTTATTTATTCACAA
16083778 CTAATTTTTATTTATTCACA
1 CTAA-TTTTATTTATTCACA
16083798 TGATTTGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
21 14 0.78
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.51
Consensus pattern (20 bp):
CTAATTTTATTTATTCACAA
Found at i:16093215 original size:17 final size:17
Alignment explanation
Indices: 16093193--16093225 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16093183 AATTTGTTCG
16093193 CGGGAATTCGAATACAA
1 CGGGAATTCGAATACAA
16093210 CGGGAATTCGAATACA
1 CGGGAATTCGAATACA
16093226 GCACGGCCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.18
Consensus pattern (17 bp):
CGGGAATTCGAATACAA
Found at i:16093674 original size:20 final size:21
Alignment explanation
Indices: 16093635--16093674 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
16093625 TGCTTCACAA
**
16093635 AATCCAAGTACATTTTAATTG
1 AATCCAAGTACACCTTAATTG
16093656 AATCCAAGTA-ACCTTAATT
1 AATCCAAGTACACCTTAATT
16093675 ATAAACAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.35
Consensus pattern (21 bp):
AATCCAAGTACACCTTAATTG
Found at i:16093811 original size:33 final size:33
Alignment explanation
Indices: 16093735--16093811 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 33
16093725 CTTATTTACT
* * * ** *
16093735 TAAAATAAATAATTTTAGTCAAAATGAAATTAG
1 TAAAATAAACAAATTTAATCAAAACAAAATTAA
*
16093768 GAAAAT-AACAAATTTAATCAAAACAAAATTAA
1 TAAAATAAACAAATTTAATCAAAACAAAATTAA
16093800 TAAAATAAACAA
1 TAAAATAAACAA
16093812 CTTTGATTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
32 25 0.71
33 10 0.29
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.26
Consensus pattern (33 bp):
TAAAATAAACAAATTTAATCAAAACAAAATTAA
Found at i:16095819 original size:15 final size:16
Alignment explanation
Indices: 16095786--16095820 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
16095776 TTAAATTAGT
16095786 ATAACAAATTAATTGA
1 ATAACAAATTAATTGA
*
16095802 ATAACAATTTAATT-A
1 ATAACAAATTAATTGA
16095817 ATAA
1 ATAA
16095821 AAGATTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (16 bp):
ATAACAAATTAATTGA
Found at i:16096539 original size:20 final size:22
Alignment explanation
Indices: 16096495--16096542 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
16096485 AAAATCACTA
*
16096495 ATAATTTAAATTTTTTATATGT
1 ATAATTTAAATTTTTTATATAT
**
16096517 ATAATTTACTTTTTTTATATAT
1 ATAATTTAAATTTTTTATATAT
16096539 ATAA
1 ATAA
16096543 AATAACTGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
ATAATTTAAATTTTTTATATAT
Found at i:16097036 original size:31 final size:31
Alignment explanation
Indices: 16096993--16097091 Score: 101
Period size: 31 Copynumber: 3.1 Consensus size: 31
16096983 TATATTTGAC
* *
16096993 CATGCTTACTAAAAAATAACTCATTTTACCA
1 CATGCTTGCTAAAAAATAACTCATTTTGCCA
* ** *
16097024 CATGCTTGCTAAAAAAAAAAACTCCCTTTGTCA
1 CATGCTTGCT--AAAAAATAACTCATTTTGCCA
*
16097057 CATGCTTGCTAAAAAATTAA-TCTTTTTGCCA
1 CATGCTTGCTAAAAAA-TAACTCATTTTGCCA
16097088 CATG
1 CATG
16097092 TATCTATTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
31 27 0.49
32 2 0.04
33 26 0.47
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.32
Consensus pattern (31 bp):
CATGCTTGCTAAAAAATAACTCATTTTGCCA
Found at i:16097047 original size:33 final size:33
Alignment explanation
Indices: 16097003--16097072 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
16096993 CATGCTTACT
* *
16097003 AAAAAATAACTCATTTTACCACATGCTTGCTAA
1 AAAAAAAAACTCACTTTACCACATGCTTGCTAA
* **
16097036 AAAAAAAAACTCCCTTTGTCACATGCTTGCTAA
1 AAAAAAAAACTCACTTTACCACATGCTTGCTAA
16097069 AAAA
1 AAAA
16097073 TTAATCTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.27
Consensus pattern (33 bp):
AAAAAAAAACTCACTTTACCACATGCTTGCTAA
Found at i:16097600 original size:26 final size:26
Alignment explanation
Indices: 16097548--16097611 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
16097538 CCAAACACTT
* *
16097548 TTAAATAAA-CAATTAATATAATAAA
1 TTAATTAAATCAATTAATAGAATAAA
*
16097573 TTGATTAAATCAATTAATAGAACT-AA
1 TTAATTAAATCAATTAATAGAA-TAAA
*
16097599 TTAATCAAATCAA
1 TTAATTAAATCAA
16097612 CCATAGCAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 7 0.22
26 24 0.75
27 1 0.03
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (26 bp):
TTAATTAAATCAATTAATAGAATAAA
Found at i:16097809 original size:21 final size:21
Alignment explanation
Indices: 16097777--16097817 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
16097767 TGAAAATTAT
16097777 CTTTTATTTTTGAAATCATAAC
1 CTTTTATTTTTGAAAT-ATAAC
16097799 CTTTT-TTTTTGAAATATAA
1 CTTTTATTTTTGAAATATAA
16097818 TAAAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.54
Consensus pattern (21 bp):
CTTTTATTTTTGAAATATAAC
Found at i:16098660 original size:29 final size:29
Alignment explanation
Indices: 16098591--16098684 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
16098581 TAAAAATAAT
* *
16098591 ACAAATATAGTTACAGATACAGTCGA-ATC
1 ACAAATATAGTTACAGATGCAGTC-ATGTC
* * **
16098620 AGAGATGCAGTTACAGATGCAGTCATGTC
1 ACAAATATAGTTACAGATGCAGTCATGTC
* *
16098649 ACAAATATAGTTACGGATGCAGACATGAT-
1 ACAAATATAGTTACAGATGCAGTCATG-TC
16098678 ACAAATA
1 ACAAATA
16098685 CATTTATAGA
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
28 1 0.02
29 49 0.96
30 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.23
Consensus pattern (29 bp):
ACAAATATAGTTACAGATGCAGTCATGTC
Found at i:16101912 original size:29 final size:29
Alignment explanation
Indices: 16101879--16101973 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
16101869 ATAGAAATAA
*
16101879 TACAGATACAATCATGTTAGAGATACAGT
1 TACAGATACAATCATGTCAGAGATACAGT
*
16101908 TACAGATACAATCGA-ATCAGAGATACAGT
1 TACAGATACAATC-ATGTCAGAGATACAGT
* * * *
16101937 TACAGATGCAGTCATGTCATAGATATAGT
1 TACAGATACAATCATGTCAGAGATACAGT
16101966 TACAGATA
1 TACAGATA
16101974 TAGACATTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 1 0.02
29 54 0.96
30 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (29 bp):
TACAGATACAATCATGTCAGAGATACAGT
Found at i:16102737 original size:31 final size:31
Alignment explanation
Indices: 16102701--16102783 Score: 94
Period size: 31 Copynumber: 2.7 Consensus size: 31
16102691 ACAATTCGAC
* * * *
16102701 AACTTAATTAAAAACTTTTGAATAGTTCAAT
1 AACTTAATTAAAAATTTTTAAATAATTAAAT
* *
16102732 AACTTAAATAAAATTTTTTAAATAATTAAAT
1 AACTTAATTAAAAATTTTTAAATAATTAAAT
* *
16102763 AACTAAATTATAAATTTTTAA
1 AACTTAATTAAAAATTTTTAA
16102784 TTAAATAACT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (31 bp):
AACTTAATTAAAAATTTTTAAATAATTAAAT
Found at i:16103213 original size:3 final size:3
Alignment explanation
Indices: 16103205--16103232 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
16103195 GGTGATCATA
16103205 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
16103233 TATTTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:16104289 original size:24 final size:25
Alignment explanation
Indices: 16104253--16104299 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
16104243 TTGACAATAT
** *
16104253 AAAATAAGTGATATATA-ATGTTCA
1 AAAATAAAAGATAAATACATGTTCA
16104277 AAAATAAAAGATAAATACATGTT
1 AAAATAAAAGATAAATACATGTT
16104300 TATGGAGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.55, C:0.04, G:0.11, T:0.30
Consensus pattern (25 bp):
AAAATAAAAGATAAATACATGTTCA
Found at i:16104780 original size:17 final size:17
Alignment explanation
Indices: 16104758--16104790 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16104748 CACACGATTG
16104758 TATAAACACCCCCAAAA
1 TATAAACACCCCCAAAA
16104775 TATAAACACCCCCAAA
1 TATAAACACCCCCAAA
16104791 CTCCATTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.36, G:0.00, T:0.12
Consensus pattern (17 bp):
TATAAACACCCCCAAAA
Found at i:16106201 original size:596 final size:595
Alignment explanation
Indices: 16105069--16108565 Score: 3528
Period size: 596 Copynumber: 6.0 Consensus size: 595
16105059 TCAAACTCTT
* * * *
16105069 TATGTTGCAATGCAATTACCCTCAATTTATTTATATGGATATTCTAGAAATATATAGAAACTTGA
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGA
* * * *
16105134 CACTTTTACTGTGA-ACCGTTAGTTTTTTTTTGAGATTTTTTT-AACAAATTTTTTATGTATAAG
66 CACTTTTACTGTGAGA-CGTCAGTTTCTTCTTGAGATTTTTTTAAACAAATTTTTTATGTATAAA
*
16105197 TTCATTAAAGAACTCAAACTTGACACAAAAGA-TGT---------AAGA--AAA--CAA---TTT
130 TTCATTAAAGAACTCAAACTTGACACAAAAGACT-TACAAAAAAAAAGATCAAAGGAAAGGGTTT
* * * * * * *
16105245 ATAT-TGAAAGTGATGATAAAAATAGGGATTGAAGCCCTTAAGGGAAATACACACAATTTTAGAA
194 ATATCT-AAAGTGAGGATAAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACACAATTGTATAA
* * * * *
16105309 GCACCCCCAAACTCGTTTTTTTTATTTTGTTT--CCCCTTTTTTCAC-TCAGCGTGTCTCTGAAA
258 GCA-CCCCAAACTC--TTTTTATGTTTTGTTTCCCCCCTTTTTTCACTTGA-CGCGTATCTGAAA
16105371 CTTGAATTGTGGTGAAATTTGACAATGCAAAACACA-TGATATATAATGTTCAAAAATAAAAGAG
319 CTTGAATTGTGGTGAAATTTGACAATGCAAAACA-AGTGATATATAATGTTCAAAAATAAAAGAG
* * * *
16105435 AAAT-GCATGTTTTTCGAGATATTTGAGCAAACTTTCTAATGAAAGATTAGAGTCATAATTACAA
383 -AATCGCATGTTTTTGGAGATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAA
* ** * * * * *
16105499 TGAAAACAATGGACAAATAAGGTAGGAAGCAAGTATCATGG-TCGGTCTCTAATCAATTGGTTAC
447 TGGAAACAACAGACAAATATGGTAGGAAGCAGGTATCATGGTTC-GCCTCTAACCAATTGGATAC
* * * *
16105563 TCTGCATTTTCAGACTCTTTAAATTGATCCGTCGTT-ATTTTGTCTTCACTTCTCTTTTTATTTA
511 TCTGCATTTTCAGACTCTTTAAATGGATCAG-CCTTGATTTTGTCTTCACCTCTCTTTTTATTTA
* *
16105627 TTTCCCCCCTCAATATTACTA
575 TTTTCCCCCTCAATATTGCTA
*
16105648 TATGTTGCAATGCAATTACTCTTTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGA
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGA
* * * * * *
16105713 CACTTTTATTGTGTGACATCAATTTCTTCTTGAGATTTTTTGAAACAATTTTTTTATGTATAAAT
66 CACTTTTACTGTGAGACGTCAGTTTCTTCTTGAGATTTTTTTAAACAAATTTTTTATGTATAAAT
*
16105778 TCATTAAAGAACTCAAACTTGATACAAAAGACTTAACAAAAAAAAAGATCAAAGGAAAGGGTTTA
131 TCATTAAAGAACTCAAACTTGACACAAAAGACTT-ACAAAAAAAAAGATCAAAGGAAAGGGTTTA
* * * **
16105843 TATCTAAAGTGAGGATTAAAAGAGGGAGTTAAGCCTTTAAGAAAAATAGACACAATTGTATAAGC
195 TATCTAAAGTGAGGATAAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACACAATTGTATAAGC
* * * *
16105908 ACCCCAAACACTTTTTATGTTTTGTTTCCCCCCTTCTTTCACTTGATGCGTATATGAAACTTGAA
260 ACCCCAAACTCTTTTTATGTTTTGTTTCCCCCCTTTTTTCACTTGACGCGTATCTGAAACTTGAA
** * * * *
16105973 TAATGGCGAAATTTTACAATGCAAAATAAGTGATATATAAAGTT-AAAATATAAAAGAGAATCGC
325 TTGTGGTGAAATTTGACAATGCAAAACAAGTGATATATAATGTTCAAAA-ATAAAAGAGAATCGC
* * * *
16106037 ATGTTTTTGGAGATGTTTAAGTGAACTTTCCAATGGAAGATTAGAGTCATAATTACAACGGAAAC
389 ATGTTTTTGGAGATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAAC
* * * ** * *
16106102 AACATACGAATATGGTAGGAAGCAGGAATCATAATTCGCCTCAAACCAATTGGATACTCTGCTTT
454 AACAGACAAATATGGTAGGAAGCAGGTATCATGGTTCGCCTCTAACCAATTGGATACTCTGCATT
* * * *
16106167 TTTAGACTCTTTAAATGGACCAACCTTGATTTTGTCTTCACCTCTCTATTTATTTATTTTCCCCC
519 TTCAGACTCTTTAAATGGATCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTATTTTCCCCC
* *
16106232 TCAGTATAGCTA
584 TCAATATTGCTA
* * * *
16106244 TATGTTGGAATGCAATTACTTTCTATTAATTTATATGGATATTCTGGAAACATATAGAAATTTGG
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTT-G
* * * * *
16106309 A-ACTTTTACTGTGAGTCGT-TGTTTTTTTCTTTA-AATTTTTTAAAC-AATATTTTTATGTATA
65 ACACTTTTACTGTGAGACGTCAG-TTTCTTCTTGAGATTTTTTTAAACAAAT-TTTTTATGTATA
*
16106370 AATTCATTGAAGAACTCAAACTTGACAC-AAA-A--T--------AAA-ATCAAA-GAAGAGGGT
128 AATTCATTAAAGAACTCAAACTTGACACAAAAGACTTACAAAAAAAAAGATCAAAGGAA-AGGGT
* * * *
16106421 TTATATCGAAAGTGATGATGAAAATAGGGAGTGAAGCCTTTAAGGGAAATAGACACAATTGTATA
192 TTATATCTAAAGTGAGGATAAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACACAATTGTATA
* * * * *
16106486 AACACCCCAAACTATTTTTATGTTTTGTTTCCCCTCTTTTTT-ACTCGACGTGTATCTGAAACTT
257 AGCACCCCAAACTCTTTTTATGTTTTGTTTCCCCCCTTTTTTCACTTGACGCGTATCTGAAACTT
* *
16106550 GAATTGTGGTGAAATTTGACAATGCAAAACAAGAGATATATAATGTTCAAAAATAAAAGACAGAT
322 GAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATATATAATGTTCAAAAATAAAAGAGA-AT
* * *
16106615 -GCATGTTTATGGAGATATTTAAGCGAACTTTCCAATGAAAAATTAGAATCATAATTACAATGGA
386 CGCATGTTTTTGGAGATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGA
* * * * * *
16106679 AATAACAAATAAATATGGTAGGAAGCAAGTATCATGGTTGGCCTCTAACCAATTGGATACTTTGC
451 AACAACAGACAAATATGGTAGGAAGCAGGTATCATGGTTCGCCTCTAACCAATTGGATACTCTGC
* * * * *
16106744 ATTTTTAGACTCTTTAAATGGGTTATG-CTTGATTTTTTTCTTCAGCTCTCTTTTTATTTA--TT
516 ATTTTCAGACTCTTTAAATGGATCA-GCCTTGA-TTTTGTCTTCACCTCTCTTTTTATTTATTTT
16106806 CCCCCTCAATATTGCTA
579 CCCCCTCAATATTGCTA
* *
16106823 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGGATATTCTGAAAACATATAGAAATTTGA
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGA
* * * *
16106888 CATTTTTACTGTGAGCCTTCAGTTTCTTCTTGAGATTTTTTTTTAAACAAATTTTTTATATATAA
66 CACTTTTACTGTGAGACGTCAGTTTCTTCTTGAGA--TTTTTTTAAACAAATTTTTTATGTATAA
* * * * * *
16106953 ATTTATTAAAGAACTCAAACTTGACACAAAATACTTGACACAAAAGAAGATTAAAGAAAAGGGTT
129 ATTCATTAAAGAACTCAAACTTGACACAAAAGACTT-ACAAAAAAAAAGATCAAAGGAAAGGGTT
* *
16107018 TATATCGAAAGTGAGGATAAAAACAGAGAGTGAAGCCTTTAAGGGAAATAGACACACGATTGTAT
193 TATATCTAAAGTGAGGATAAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACACA--ATTGTAT
* * *
16107083 AAGCACCCCCAAACTCTTTTTACGTTTTGTTTCCCCCTTTTTTTTTTCAC-TCAGCGCGTATCTG
256 AAGCA-CCCCAAACTCTTTTTATGTTTTGTTTCCCCC---CTTTTTTCACTTGA-CGCGTATCTG
* * *
16107147 AAACTTGAATTGTGGTGAAATTTGACAATACAAAACAAGTGATATATAAAGTTTAAAAATAAAAG
316 AAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATATATAATGTTCAAAAATAAAAG
* * * * * * * * *
16107212 AGAAGCACATGTTTTTGGTGATATTTAAGTGTAGTTTACAATGAAAGATTAGATTCATAGTTACA
381 AGAATCGCATGTTTTTGGAGATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACA
* *
16107277 ATGGAAACAAC-GAACAAATATGGTAAGAAGCAGGTATCATGGTTGGCCTCTAACCAATTGGATA
446 ATGGAAACAACAG-ACAAATATGGTAGGAAGCAGGTATCATGGTTCGCCTCTAACCAATTGGATA
* * * * * **
16107341 CTCTGTATTTTAAGACTCTTTATAT-TAGTTAGCCGCGATTTTGTCTTCACCTCTCTTTTTATTT
510 CTCTGCATTTTCAGACTCTTTAAATGGA-TCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTT
*
16107405 ATTTTCCCTCTCAATATTGC--
574 ATTTTCCCCCTCAATATTGCTA
* * * * * *
16107425 TA-----CAA--C---TACTTTTTATTTATTTATATGAATATTCTCGAAACATATAGATACTTGG
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGA
* * * *
16107480 CACTTTTACTATGAGCCGTCAGTTTCTTCTTGAGATTTTTTTAAACAAATTTTTTATGAATAAAG
66 CACTTTTACTGTGAGACGTCAGTTTCTTCTTGAGATTTTTTTAAACAAATTTTTTATGTATAAAT
* * * *
16107545 TCACTAAAGAACTCAAACTTGATATAAAAGACTTGACACAAAAGAAA-ATCAAAGGAAAGGGTTT
131 TCATTAAAGAACTCAAACTTGACACAAAAGACTT-ACA-AAAAAAAAGATCAAAGGAAAGGGTTT
* * * * *
16107609 GTATCTAAAGTGAGGATTAAAACAAGGAGTGAAACCTTTAAGGGAAATAGACA-ATTTTGTATAA
194 ATATCTAAAGTGAGGATAAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACACA-ATTGTATAA
* ** * *
16107673 GCACCCCAAACTCTTTATATGTTTTGTTTCTCCCTTTTTTTTTTTTCACTCGGCGCGTATCTGAA
258 GCACCCCAAACTCTTTTTATGTTTTGTTTC-CCC----CCTTTTTTCACTTGACGCGTATCTGAA
* * * * *
16107738 ACTTGAACTATGATGAAATTTGACAATACAAAAAAAGTGATATATAATGTTCAAAAATAAAAGAG
318 ACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATATATAATGTTCAAAAATAAAAGAG
* * * ** * * *
16107803 -A-CACATATTTTTGGAGATATTTAAGCGAAGTTTCCAATGAACTATAAGAGTGATAATGACAAT
383 AATCGCATGTTTTTGGAGATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAAT
* * * ** * *
16107866 GGAAATAATAGACAAATATGGTAGGAAGCTGGTATCATGGTTAACCTGTAACCAATTGGGTACTC
448 GGAAACAACAGACAAATATGGTAGGAAGCAGGTATCATGGTTCGCCTCTAACCAATTGGATACTC
* * * * *
16107931 TGAATTTTCAGACACTTTAAATGGGTCAGCCTCGATTTTGTTTTCACCTCTCTTTTTATTTATTT
513 TGCATTTTCAGACTCTTTAAATGGATCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTA-TT
* *
16107996 TTACCCTTCAATATTGCTA
577 TTCCCCCTCAATATTGCTA
* * * *
16108015 TATGTTTCAATGTAATTACTCTCTATTTATTTATATAGACATTCTGGAAACATATAGAAACTTGA
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGA
* * *
16108080 CACTTTTACTGTGAGTCATCAGTTTCTTCTTGAGATTTTTTTAAACAATTTTTTTATGTATAAAT
66 CACTTTTACTGTGAGACGTCAGTTTCTTCTTGAGATTTTTTTAAACAAATTTTTTATGTATAAAT
* *
16108145 TC-TATAAAG-ACTCAAACTTGACACAAAAG-------------AAGATCGAAGAAAAGGGTTTA
131 TCAT-TAAAGAACTCAAACTTGACACAAAAGACTTACAAAAAAAAAGATCAAAGGAAAGGGTTTA
** * * * * * * * ** *
16108195 TATGGAATGTTAGAATGAAAACAAGGAGTGAAGCATTTAAAGGAAATAGACAGGATTGTATAAAC
195 TATCTAAAGTGAGGATAAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACACAATTGTATAAGC
* * * * * * *
16108260 ACCCAAAACTCTTTTTTGTGTTTTGTTTCCCCCATTTATTCACTCGATC-CATATTTGAAACTTG
260 ACCCCAAACTC-TTTTTATGTTTTGTTTCCCCCCTTTTTTCACTTGA-CGCGTATCTGAAACTTG
* *
16108324 AATTGTGGTGAAATTTGACAATTC--AA-AA---ATA-A-AA----C---------AGA-AA-CA
323 AATTGTGGTGAAATTTGACAATGCAAAACAAGTGATATATAATGTTCAAAAATAAAAGAGAATCG
* * *
16108366 CATGTTTTTGGAGATATTTAAGTGAACTTTCCAATAAAAGGTTAGAGTCATAATTACAATGGAAA
388 CATGTTTTTGGAGATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAA
** * * ** * *
16108431 CAACAGATTAACATGGTAGGGAGCATATATCATGGTTGGCCAT-TAACAAATTGGATACTCT--A
453 CAACAGACAAATATGGTAGGAAGCAGGTATCATGGTTCGCC-TCTAACCAATTGGATACTCTGCA
** ** * *
16108493 TATTTCTAGACTCTTTAAATGGGCCAAACTCGATTTTGTCTTCACCTCTCTATTTATTTATTTTC
517 T-TTTC-AGACTCTTTAAATGGATCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTATTTTC
16108558 CCCCTCAA
580 CCCCTCAA
16108566 CTCTATTTAT
Statistics
Matches: 2453, Mismatches: 362, Indels: 226
0.81 0.12 0.07
Matches are distributed among these distances:
558 2 0.00
559 15 0.01
560 154 0.06
561 1 0.00
569 1 0.00
573 2 0.00
574 1 0.00
575 3 0.00
578 4 0.00
579 194 0.08
580 261 0.11
581 181 0.07
582 51 0.02
583 6 0.00
584 3 0.00
585 80 0.03
586 16 0.01
587 182 0.07
588 32 0.01
589 82 0.03
590 128 0.05
591 6 0.00
592 76 0.03
593 1 0.00
594 21 0.01
595 65 0.03
596 392 0.16
597 68 0.03
598 12 0.00
599 46 0.02
600 107 0.04
602 36 0.01
603 208 0.08
604 16 0.01
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (595 bp):
TATGTTGCAATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGA
CACTTTTACTGTGAGACGTCAGTTTCTTCTTGAGATTTTTTTAAACAAATTTTTTATGTATAAAT
TCATTAAAGAACTCAAACTTGACACAAAAGACTTACAAAAAAAAAGATCAAAGGAAAGGGTTTAT
ATCTAAAGTGAGGATAAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACACAATTGTATAAGCA
CCCCAAACTCTTTTTATGTTTTGTTTCCCCCCTTTTTTCACTTGACGCGTATCTGAAACTTGAAT
TGTGGTGAAATTTGACAATGCAAAACAAGTGATATATAATGTTCAAAAATAAAAGAGAATCGCAT
GTTTTTGGAGATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAA
CAGACAAATATGGTAGGAAGCAGGTATCATGGTTCGCCTCTAACCAATTGGATACTCTGCATTTT
CAGACTCTTTAAATGGATCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTATTTTCCCCCTC
AATATTGCTA
Found at i:16106990 original size:14 final size:14
Alignment explanation
Indices: 16106971--16106997 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16106961 AAGAACTCAA
16106971 ACTTGACACAAAAT
1 ACTTGACACAAAAT
16106985 ACTTGACACAAAA
1 ACTTGACACAAAA
16106998 GAAGATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.22, G:0.07, T:0.19
Consensus pattern (14 bp):
ACTTGACACAAAAT
Found at i:16109078 original size:21 final size:20
Alignment explanation
Indices: 16109031--16109079 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
16109021 ATGCTACAGA
16109031 ATACTACCGATATAATTTGG
1 ATACTACCGATATAATTTGG
* * *
16109051 ATTCTACCGGTATAATTTTG
1 ATACTACCGATATAATTTGG
16109071 AGTACTACC
1 A-TACTACC
16109080 AATACTCTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATACTACCGATATAATTTGG
Found at i:16109340 original size:5 final size:5
Alignment explanation
Indices: 16109330--16109355 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
16109320 AGAAAGAAGG
16109330 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
16109356 CAAAGATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:16117034 original size:141 final size:141
Alignment explanation
Indices: 16116780--16117061 Score: 564
Period size: 141 Copynumber: 2.0 Consensus size: 141
16116770 CCCGTGCAGT
16116780 TACCCTTCAATCTGCCCACTGTCACGTGTCGATACATAATTGGTCCACGTGATAAAATCAGTCAA
1 TACCCTTCAATCTGCCCACTGTCACGTGTCGATACATAATTGGTCCACGTGATAAAATCAGTCAA
16116845 AAATTAACACCGTTACCGACAGGTACCAGATTGTATAACGAAATTAAACTTCAGGTACCACATTC
66 AAATTAACACCGTTACCGACAGGTACCAGATTGTATAACGAAATTAAACTTCAGGTACCACATTC
16116910 GACATTTTGAA
131 GACATTTTGAA
16116921 TACCCTTCAATCTGCCCACTGTCACGTGTCGATACATAATTGGTCCACGTGATAAAATCAGTCAA
1 TACCCTTCAATCTGCCCACTGTCACGTGTCGATACATAATTGGTCCACGTGATAAAATCAGTCAA
16116986 AAATTAACACCGTTACCGACAGGTACCAGATTGTATAACGAAATTAAACTTCAGGTACCACATTC
66 AAATTAACACCGTTACCGACAGGTACCAGATTGTATAACGAAATTAAACTTCAGGTACCACATTC
16117051 GACATTTTGAA
131 GACATTTTGAA
16117062 ACTTCAGGTA
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (141 bp):
TACCCTTCAATCTGCCCACTGTCACGTGTCGATACATAATTGGTCCACGTGATAAAATCAGTCAA
AAATTAACACCGTTACCGACAGGTACCAGATTGTATAACGAAATTAAACTTCAGGTACCACATTC
GACATTTTGAA
Found at i:16117513 original size:14 final size:14
Alignment explanation
Indices: 16117494--16117520 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16117484 GAACTTAAAG
16117494 TTGACACAAAAGAC
1 TTGACACAAAAGAC
16117508 TTGACACAAAAGA
1 TTGACACAAAAGA
16117521 AGATCAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.19, G:0.15, T:0.15
Consensus pattern (14 bp):
TTGACACAAAAGAC
Found at i:16118261 original size:378 final size:378
Alignment explanation
Indices: 16117494--16118567 Score: 1281
Period size: 378 Copynumber: 2.8 Consensus size: 378
16117484 GAACTTAAAG
* * ** * *
16117494 TTGACACAAAAGACTTGACACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAAGTG-AGGATA
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTATA
* ** * * *
16117558 AAAATAGAGAATGAAGCCTTTAAGAGAAATATACACGATTGTAT-AGCACTCCAAACT-TATTTT
66 AAAATAGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTATAAGCACCCCAAACTCT-TTTT
* * * *
16117621 ATGTTTTGTTTGCCCTCTTTTTTCACTCGGTGCGTATCTAAAACTTGAATTGTGGTGAAATTTGG
130 ATGTTTTGTTT-CCCCCTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGA
*
16117686 CAATGCAAAACAAGTGATAAATAATGTTT-ACAAATAAAAGAGAAACACATG-TTTTGGAGATAT
194 CAATGCAAAACAAGTGATAAATAA-GTTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATAT
** * * * * **
16117749 TTAAGTGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACACACAAATATGGT
258 TTAAGCAAACTTTCCATTAAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATACT
*
16117814 ACAAAACAGTTATCGTTGTTGGCCTCTAAACAAATGGATATTCTATATTTTCAGAC
323 ACAAAACAGTTATCGTTGTTGGCCTCTAAACAAATGGATACTCTATATTTTCAGAC
* **
16117870 ATGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAACTTATATCGAAAGTGAAGTAT-
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTATA
* *
16117934 AAAATAGGGAGCGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCACCAAACTCTTTTT
66 AAAATAGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTATAAGCACC-CCAAACTCTTTTT
* * *
16117999 ATGTTTTGTTTCCCCCTTTTTTCACTCGACGCGTATCTGAAATTTGAATTGTGGTGAAATTTTAC
130 ATGTTTTGTTTCCCCCTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGAC
* *
16118064 TATGCAAAACAAGTGATAAATAAGTTTAAAAAATAAAAGAGAAACACATGTTTTTGGTGATATTT
195 AATGCAAAACAAGTGATAAATAAGTTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTT
* * * *
16118129 AAGCAAACTTTCCATTAAAATATTAGAGTCATAATTACAATGAAAATAATAGACAAATATACTAG
260 AAGCAAACTTTCCATTAAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATACTAC
* * ** * * * *
16118194 GAAGCACG-TATC-TTGGTTGGCCTCTAGCCAATTGGATACTCTGTATTTTTAGAT
325 AAAACA-GTTATCGTT-GTTGGCCTCTAAACAAATGGATACTCTATATTTTCAGAC
* * * * * * * *
16118248 TTGACATAAAATACTTAAAACAAAAGATGATTAACGAAAATAGTTTATATCGAAAGTGAGGT-TG
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTATA
* *
16118312 AAAATAGGGAGCGAAACCTTTAAGAGAAATAGACATGATTGTATAAGAACCCCAAACTCTTTTTA
66 AAAATAGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTATAAGCACCCCAAACTCTTTTTA
* * * * *
16118377 TGTTTTGTTTCCCCCATTTTTTCACTCGGCACCTATCTGAAACTTGAACTATGGTGAAAGTTGAC
131 TGTTTTGTTTCCCCC-TTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGAC
* * ** * * *
16118442 AACGCAAAACAAGTGGTATGTAA-TGTTAAAAAATAAGAGAAAAAGCTA-ATGTTTTTGAAGATA
195 AATGCAAAACAAGTGATAAATAAGT-TTAAAAAATAAAAGAGAAA-C-ACATGTTTTTGGAGATA
* * * * * *
16118505 TTTAAGCGAAA-TTTTCAATCAAAGATTATAGTCATAATTACAATGGAAACCATAGATAAATAT
257 TTTAAGC-AAACTTTCCATTAAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATAT
16118568 GGTAGGAAAC
Statistics
Matches: 596, Mismatches: 88, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
376 91 0.15
377 132 0.22
378 303 0.51
379 66 0.11
380 4 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (378 bp):
TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTATA
AAAATAGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTATAAGCACCCCAAACTCTTTTTA
TGTTTTGTTTCCCCCTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACA
ATGCAAAACAAGTGATAAATAAGTTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTA
AGCAAACTTTCCATTAAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATACTACA
AAACAGTTATCGTTGTTGGCCTCTAAACAAATGGATACTCTATATTTTCAGAC
Found at i:16120473 original size:22 final size:21
Alignment explanation
Indices: 16120448--16120490 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
16120438 TATTTCTTTA
*
16120448 AATTCTGTTTTCTTTTATTTTT
1 AATTCTG-TTTCTTTTAGTTTT
*
16120470 AATTGTGTTTCTTTTAGTTTT
1 AATTCTGTTTCTTTTAGTTTT
16120491 CCTCAGATCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.14, C:0.07, G:0.09, T:0.70
Consensus pattern (21 bp):
AATTCTGTTTCTTTTAGTTTT
Found at i:16122998 original size:378 final size:373
Alignment explanation
Indices: 16122287--16123357 Score: 1270
Period size: 378 Copynumber: 2.8 Consensus size: 373
16122277 AACTTAAAGT
* * **
16122287 TGACACAAAAG-ACTTGACACAAAATAAGATCAAAGAAAAGGGTTTATATCAAAAGTGAGGATG-
1 TGACAC-AAAGTACTTGAAACAAAAGAAGATCAAAGAAAATAGTTTATATCAAAAGTGAGGATGA
* * * * *
16122350 AAATCAAGGAGTGAAGCCTTTAAGGAAAATATACACGATTGTATAAGCACCCCAAGCTCATTTTA
65 AAAT-AGGGAGCGAAGCCTTTAAGG-AAATAAACATGATTGTATAAGCACCCCAA-CTCTTTTTA
*
16122415 TGTTTTGTTTC-CCCTCTTTTTTCACTTGGTGCATATCTGAAACTTGAATTGTGGTGAAATTTGA
127 TGTTTTGTTTCTCCC-CTTTTTTCACTCGGTGC-TATCTGAAACTTGAATTGTGGTGAAATTTGA
16122479 CAATGCAGAAAAAGTGATAAATAATGCTTAAAAATAAAAGAGAAACACATGTTTTTGTAGATATT
190 CAATGCA-AAAAAGTGATAAATAATGCTTAAAAATAAAAGAGAAACACATGTTTTTGTAGATATT
* * ** *
16122544 TCAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGATAAATATAGTA
254 TAAGCGAACATTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATAGTA
*
16122609 GAAAACAGTTATCTTGAG-TGGCCTCTAACCAATTGTATAT-TCTGCATTTTCAGACA
319 GAAAACAGTTATCTTG-GTTGGCCTCTAACCAATTGGAT-TCTCTGCATTTT-AGACA
* * * *
16122665 TGACACAAAGTACTTCAAACAAAAGAAGATCAAAGAAAATAGTTTATATCGAAAGTGAAGTTGAA
1 TGACACAAAGTACTTGAAACAAAAGAAGATCAAAGAAAATAGTTTATATCAAAAGTGAGGATGAA
* *
16122730 AATAGGGAGCGAAGCCTTTTAAGGAAATAAACTTGATTGTATAAGCACCCTTAACTCTTTTTATG
66 AATAGGGAGCGAAGCC-TTTAAGGAAATAAACATGATTGTATAAGCACCC-CAACTCTTTTTATG
*
16122795 TTTTGTTTCTCCCCTTTTTTCACTCGGTGCGTATCTGAAAGTTGAATTGTGGTGAAATTTGACAA
129 TTTTGTTTCTCCCCTTTTTTCACTCGGTGC-TATCTGAAACTTGAATTGTGGTGAAATTTGACAA
*
16122860 TGCAAAACAAGTGATAAATAATG-TTAGAAAATAAAAGAGAGACACATGTTTTTTGT-GATATTT
193 TGCAAAA-AAGTGATAAATAATGCTTA-AAAATAAAAGAGAAACACATG-TTTTTGTAGATATTT
* * * *
16122923 AAGCGAACATTCCAATGAAAGATTAGTGTCATAATTATAGTGGAAACAACT-GACAAATATGGTA
255 AAGCGAACATTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAA-TAGACAAATATAGTA
* * * *
16122987 GGAAGCAGTTATCTTGGTTGGCCTCTAACTAATTGGATTCTTTGCATTTTAGACA
319 GAAAACAGTTATCTTGGTTGGCCTCTAACCAATTGGATTCTCTGCATTTTAGACA
* * *
16123042 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAATAG-TTATATAAAAAGTGAGGATGAG
1 TGACACAAAGTACTTGAAACAAAAGAAGATCAAAGAAAATAGTTTATATCAAAAGTGAGGATGAA
* * * * * * *
16123106 AACAGGGAGCGCAGGCTTTAAGGGAAATAGACATGATTGTATAAGCAACCCGAACTGTTTCTATG
66 AATAGGGAGCGAAGCCTTTAA-GGAAATAAACATGATTGTATAAGC-ACCCCAACTCTTTTTATG
* * * * * *
16123171 TTTT-TCTTCTACCCTTTATTCACTCGGTGC-ATTTAAAAATCTTGAATTATGGTGAAAGTTGAC
129 TTTTGT-TTCTCCCCTTTTTTCACTCGGTGCTATCT-GAAA-CTTGAATTGTGGTGAAATTTGAC
* * * * * * *
16123234 AATGCAAATAAAGTGGTATATAATG-GTAAAAA-AAAACAAAAATCTA-ATGTTTTTGAAAATAT
191 AATGCAAA-AAAGTGATAAATAATGCTTAAAAATAAAAGAGAAA-C-ACATGTTTTTGTAGATAT
* ** ** *
16123296 TTAAGCGTAGTTTAGAATGAAAGATTAGAGTCATTATTACAATGGAAACAATAGACAAATAT
253 TTAAGCGAACATTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATAT
16123358 GACAAGGAGT
Statistics
Matches: 600, Mismatches: 72, Indels: 45
0.84 0.10 0.06
Matches are distributed among these distances:
374 17 0.03
375 72 0.12
376 133 0.22
377 62 0.10
378 292 0.49
379 24 0.04
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (373 bp):
TGACACAAAGTACTTGAAACAAAAGAAGATCAAAGAAAATAGTTTATATCAAAAGTGAGGATGAA
AATAGGGAGCGAAGCCTTTAAGGAAATAAACATGATTGTATAAGCACCCCAACTCTTTTTATGTT
TTGTTTCTCCCCTTTTTTCACTCGGTGCTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGC
AAAAAAGTGATAAATAATGCTTAAAAATAAAAGAGAAACACATGTTTTTGTAGATATTTAAGCGA
ACATTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATAGTAGAAAACA
GTTATCTTGGTTGGCCTCTAACCAATTGGATTCTCTGCATTTTAGACA
Found at i:16124991 original size:377 final size:375
Alignment explanation
Indices: 16124290--16125406 Score: 1322
Period size: 377 Copynumber: 3.0 Consensus size: 375
16124280 AGAACGTAAA
* ** * *
16124290 CTTGACACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAAGTGAGGATGAAAATAGGGAGTGA
1 CTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGTTGAAAATAGGGAGCGA
* * * * * *
16124355 AACCTTTAAGGGAAATATACACGATTGTA-GAGCACCCCAAACTCGTTTTATG-TTTGTTT-GCC
66 AGCCTTTAA-GGAAATAGACATGATTGTATAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCCC
* ** * * *
16124417 CTCTTTTACACTCAGTGTGTATCTGAAACTTGAATTGTGGTGAAATGTGACAATGCAAAACAAGT
130 CT-TTTTTCACTTGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGT
* * * *
16124482 GATAAATAATGTTTATAAATAAAATAGAAACACATGTTTTTGGAGATATTTAAAAGAAATTTTCG
194 GATAAATAAT-TTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGAGAAATTTTCG
* * * * *
16124547 TTGAAAGATTAGAGTCATAACTACAATGGAAACAACAGACAAATATGGTACGAAAG-AATTGTCT
258 TTGAAAGATTAGAGTTATAATTACAATGGAAACAACAGACAAATATGGTA-GGAAGCAAGTATCT
* * *
16124611 TGGTTAGCCTCTAACCAATTGGATATTTTGCATTTTCAGTCATGACACAAAATAC
322 TGGTTAGCCTCTAACCAATTGGATAATCTGCATTTTCAGACATGACACAAAAT-C
* * * * *
16124666 C-TGAAACAAAAGAAGATCAAAGAAAACAATTTATATCGAAAGTAAAGTTGAAAATAGGGAG-GG
1 CTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGTTGAAAATAGGGAGCGA
* *
16124729 AGCCTTTTAAGGAAATAGACATGATTGTATAAGCACTACCAAACTCTTTTTATGTTTTCTTTCCC
66 AGCC-TTTAAGGAAATAGACATGATTGTATAAGCAC-CCCAAACTCTTTTTATGTTTTGTTT-CC
* *
16124794 CCCTTTTTTCACTTGGCGCGTATCTGAAAGTTGAATTATGGTGAAATTTGACAATGCAAAACAAG
128 CCCTTTTTTCACTTGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAG
* * * *
16124859 TGATAAATAATTTCAAAAATAAAAGAGAAACACATGTTTTTGGTGATATTTAAGTGAACTTTTCG
193 TGATAAATAATTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGAGAAATTTTCG
* * * *
16124924 TTGAAAGATTAGAGTTATAATTACAATGGAAATAATAGACAAATATGCTAGGAAGCAGGTATCTT
258 TTGAAAGATTAGAGTTATAATTACAATGGAAACAACAGACAAATATGGTAGGAAGCAAGTATCTT
* * * *
16124989 GGTTGGCCTTTAGCCAATTGGATAATCTGCATTTTCAGACTTGACACAAAATC
323 GGTTAGCCTCTAACCAATTGGATAATCTGCATTTTCAGACATGACACAAAATC
* * *
16125042 CTTGAAACAAAAGATGATCAAAGAAAATAGTTTATATCAAAAGTGAGGTTGAAAACAGGGAGCGA
1 CTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGTTGAAAATAGGGAGCGA
* *
16125107 AGACTTTAAGAGAAATAGACATGATTGTTTAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCCC
66 AGCCTTTAAG-GAAATAGACATGATTGTATAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCCC
* * * * *
16125172 CTTTTTTCACTTGGCACGTATCTCAAACTTAAATTGTGGTGAAAGTTGACAACAG-AAAACAA-T
130 CTTTTTTCACTTGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAA-TGCAAAACAAGT
* * * * * * * *
16125235 GGTATATAAGGTTAAAAAATAAAAGAAAAAAACTAATGTTTTTGAAGATATTGAAGCGAAATTTT
194 GATAAATAA-TTTAAAAAATAAAAGAGAAACAC--ATGTTTTTGGAGATATTTAAGAGAAATTTT
* * * *
16125300 CAATT-AAAGATTAGAGCCT-TAATTACAATGGAAACAACAGACAAATATGGTAGGAAACATGTA
256 C-GTTGAAAGATTAGAG-TTATAATTACAATGGAAACAACAGACAAATATGGTAGGAAGCAAGTA
* **
16125363 TCTTGGTTCGCCTCTAAGAAATTGGATACA-CT-CTATTTTCAGAC
319 TCTTGGTTAGCCTCTAACCAATTGGATA-ATCTGC-ATTTTCAGAC
16125407 TTTGCAATGC
Statistics
Matches: 633, Mismatches: 90, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
374 21 0.03
375 70 0.11
376 98 0.15
377 233 0.37
378 203 0.32
379 8 0.01
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (375 bp):
CTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGTTGAAAATAGGGAGCGA
AGCCTTTAAGGAAATAGACATGATTGTATAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCCCC
TTTTTTCACTTGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGA
TAAATAATTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGAGAAATTTTCGTTG
AAAGATTAGAGTTATAATTACAATGGAAACAACAGACAAATATGGTAGGAAGCAAGTATCTTGGT
TAGCCTCTAACCAATTGGATAATCTGCATTTTCAGACATGACACAAAATC
Found at i:16128472 original size:60 final size:58
Alignment explanation
Indices: 16128259--16128527 Score: 242
Period size: 58 Copynumber: 4.6 Consensus size: 58
16128249 TAGAAATAAG
** * * * *
16128259 TTTTGGAAAA-TTTAAGGTCGAAAATGTGATTTT-TAGAAATTTGGGGGTAAAACGGTAA
1 TTTTGGAAAAGTTTGGGGT-GAAAATGTGATTTTGGAAAAATTTGGGGTTAAAA-TGTAA
* * * * * * *
16128317 TTTTGG--ATGTTCGAGGG-CAAAATAGTAAATTTTGGAGAATTTTGGGGTTAAAATATAA
1 TTTTGGAAAAGTTTG-GGGTGAAAAT-GT-GATTTTGGAAAAATTTGGGGTTAAAATGTAA
* *
16128375 TTTTGGAAATGTTTGGGGTGAAAATGTGATTTTGGAAAAATTTGGGGTGAAAATGTAA
1 TTTTGGAAAAGTTTGGGGTGAAAATGTGATTTTGGAAAAATTTGGGGTTAAAATGTAA
* * *
16128433 TTTTGGAAAAGTTAATGGGGTGAAAATGTGATTTTGGAAAAGTTTAGGGGTTAATATGCAA
1 TTTTGGAAAAGTT--TGGGGTGAAAATGTGATTTTGGAAAAATTT-GGGGTTAAAATGTAA
* *
16128494 TTTTGGAGAAGTTTGGGGGTTAAAATGTGATTTT
1 TTTTGGAAAAGTTT-GGGGTGAAAATGTGATTTT
16128528 CAAAGAAAAT
Statistics
Matches: 174, Mismatches: 25, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
56 6 0.03
57 4 0.02
58 60 0.34
59 22 0.13
60 58 0.33
61 24 0.14
ACGTcount: A:0.33, C:0.02, G:0.29, T:0.36
Consensus pattern (58 bp):
TTTTGGAAAAGTTTGGGGTGAAAATGTGATTTTGGAAAAATTTGGGGTTAAAATGTAA
Found at i:16128497 original size:30 final size:29
Alignment explanation
Indices: 16128335--16128527 Score: 206
Period size: 29 Copynumber: 6.4 Consensus size: 29
16128325 GTTCGAGGGC
* * *
16128335 AAAATAGTAAATTTTGGAGAATTTTGGGGTT
1 AAAAT-GT-AATTTTGGAAAAGTTTGGGGTG
* *
16128366 AAAATATAATTTTGGAAATGTTTGGGGTG
1 AAAATGTAATTTTGGAAAAGTTTGGGGTG
* *
16128395 AAAATGTGATTTTGGAAAAATTTGGGGTG
1 AAAATGTAATTTTGGAAAAGTTTGGGGTG
16128424 AAAATGTAATTTTGGAAAAGTTAATGGGGTG
1 AAAATGTAATTTTGGAAAAGTT--TGGGGTG
* *
16128455 AAAATGTGATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTGGAAAAGTTT-GGGGTG
* * * *
16128485 AATATGCAATTTTGGAGAAGTTTGGGGGTT
1 AAAATGTAATTTTGGAAAAGTTT-GGGGTG
*
16128515 AAAATGTGATTTT
1 AAAATGTAATTTT
16128528 CAAAGAAAAT
Statistics
Matches: 138, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
29 64 0.46
30 41 0.30
31 33 0.24
ACGTcount: A:0.34, C:0.01, G:0.28, T:0.37
Consensus pattern (29 bp):
AAAATGTAATTTTGGAAAAGTTTGGGGTG
Found at i:16129529 original size:3 final size:3
Alignment explanation
Indices: 16129521--16129549 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
16129511 TCGAATCTCT
16129521 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
16129550 TTAAAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:16131027 original size:78 final size:78
Alignment explanation
Indices: 16130945--16131970 Score: 1096
Period size: 78 Copynumber: 13.2 Consensus size: 78
16130935 GCTGATGGTT
*
16130945 ATCTGCCCCAAGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
1 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
*
16131010 TCGAATAGTTGCA
66 TCGAATGGTTGCA
* * * * * *
16131023 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCTCAGGCTCGAGGTAAAAGA
1 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
* *
16131088 TCTAATGGTTGTA
66 TCGAATGGTTGCA
* * * *
16131101 ATTTGCCCTAGGCTCAGGGTAAGAGATTGACTGACGGTGATCTGCCCCATGATCGGGGTAAAAGA
1 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
* *
16131166 TCGAATAGTTGTA
66 TCGAATGGTTGCA
* * * * * ** * *
16131179 ATTTGCCCTAGGCTCGGGGTAAGAGATTGGTTGATGGTGATTTGCTTCAAGCTCGGGGTAAAAGA
1 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
*
16131244 TCGAATGGTTGTA
66 TCGAATGGTTGCA
* * * * * *
16131257 ATCTGCCCCAAGCTC-GAGGTAAGAGATTGGATGATGGCGATCTACCCCAGGCTCGGGGTAAAAG
1 ATCTGCCCCAGGCTCAG-GGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAG
* *
16131321 ATCAAATGGCTGCA
65 ATCGAATGGTTGCA
*
16131335 ATCTGCCCCAGGCTC-GAGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGAGGTAAAAG
1 ATCTGCCCCAGGCTCAG-GGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAG
* *
16131399 ATCGAATAGTTACA
65 ATCGAATGGTTGCA
* * * * * * * *
16131413 ATCTGCCCCAGGCTTAAGTGT--TAGATTGGCTGATGGTGATTTGGCTCAAGCTCGGGGTAAAAG
1 ATCTGCCCCAGGC-TCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAG
**
16131476 ATATAATGGTTGCA
65 ATCGAATGGTTGCA
* * ** * * * *
16131490 ATTTACCCTGGGCTCGGGGTAAGAGATTGGCTGGTAGTGATCTGCCCCATAATCGGGGTAAAAGA
1 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
* *
16131555 TCGAATAGTTACA
66 TCGAATGGTTGCA
** * * * *
16131568 ATCTG-CCCAGGCTC-GGAGTAAGAGATT-ATTGATGGTGATCTGTCCCAGGTTCGAGGTAAAAG
1 ATCTGCCCCAGGCTCAGG-GTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAG
16131630 ATCGAATGGTTGCA
65 ATCGAATGGTTGCA
* * * * * *
16131644 ATCTGCCTCAAGCTCGGGGTAAGAGATTGACTGATAGTGATTTGCCCCATGATCGGGGTAAAAGA
1 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
* *
16131709 TCGAATAGTTGTA
66 TCGAATGGTTGCA
** * * * * * * *
16131722 ATCTATCTCGGGCTC-GAGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGGTCGAGGTAAAAA
1 ATCTGCCCCAGGCTCAG-GGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAG
*
16131786 ATCGAATGGCTGCA
65 ATCGAATGGTTGCA
* * *
16131800 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTAATGATGATCTTCCCCATGATCGGGGTAAAAGA
1 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
* *
16131865 TCGAATAGTTGTA
66 TCGAATGGTTGCA
* * * ***
16131878 ATCTGCCCCAAGCTCAGGGTAAGAGATTGGTTGATGGTGATTTGCCCCAACCTCGGGGTAAAAGA
1 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
* *
16131943 TCGAACGGTTGTA
66 TCGAATGGTTGCA
*
16131956 ATTTGCCCCAGGCTC
1 ATCTGCCCCAGGCTC
16131971 GGAGTAGGAG
Statistics
Matches: 781, Mismatches: 156, Indels: 22
0.81 0.16 0.02
Matches are distributed among these distances:
76 49 0.06
77 90 0.12
78 637 0.82
79 4 0.01
80 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (78 bp):
ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGATCGGGGTAAAAGA
TCGAATGGTTGCA
Found at i:16131972 original size:39 final size:39
Alignment explanation
Indices: 16130984--16131986 Score: 420
Period size: 39 Copynumber: 25.8 Consensus size: 39
16130974 GCTGATGGTG
* * * *
16130984 ATCTGCCCCATGATCGGGGTAAAAGATCGAATAGTTGCA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * ** * * *
16131023 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * *
16131062 ATCTGCCTCAGGCTCGAGGTAAAAGATCTAATGGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * * * * *** *
16131101 ATTTGCCCTAGGCTCAGGGTAAGAGATTGACTGACGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * *
16131140 ATCTGCCCCATGATCGGGGTAAAAGATCGAATAGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * * ** * * *
16131179 ATTTGCCCTAGGCTCGGGGTAAGAGATTGGTTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* ** *
16131218 ATTTGCTTCAAGCTCGGGGTAAAAGATCGAATGGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * * * * * **
16131257 ATCTGCCCCAAGCTCGAGGTAAGAGATTGGATGATGGCG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * *
16131296 ATCTACCCCAGGCTCGGGGTAAAAGATCAAATGGCTGCA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * ** * * *
16131335 ATCTGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * * **
16131374 ATCTGCCCCATGATCGAGGTAAAAGATCGAATAGTTACA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
** * * * ** * * *
16131413 ATCTGCCCCAGGCTTAAGTGT--TAGATTGGCTGATGGTG
1 ATCTGCCCCAGGC-TCGGGGTAAAAGATCGAATGGTTGTA
* * * * ** *
16131451 ATTTGGCTCAAGCTCGGGGTAAAAGATATAATGGTTGCA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * ** * * ** * *
16131490 ATTTACCCTGGGCTCGGGGTAAGAGATTGGCTGGTAGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
*** * **
16131529 ATCTGCCCCATAATCGGGGTAAAAGATCGAATAGTTACA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * * * * *
16131568 ATCTG-CCCAGGCTCGGAGTAAGAGAT-TATTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * *
16131605 ATCTGTCCCAGGTTCGAGGTAAAAGATCGAATGGTTGCA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * * * * * *
16131644 ATCTGCCTCAAGCTCGGGGTAAGAGATTGACTGATAGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * *
16131683 ATTTGCCCCATGATCGGGGTAAAAGATCGAATAGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
** * * * * * ** * * *
16131722 ATCTATCTCGGGCTCGAGGTAAGAGATTGGTTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * *
16131761 ATCTGCCCCAAGG-TCGAGGTAAAAAATCGAATGGCTGCA
1 ATCTGCCCC-AGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * *
16131800 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTAAT-GATG--
1 ATCTGCCCCAGGCTCGGGGTAAAAGA-T--CGAATGGTTGTA
* * * *
16131839 ATCTTCCCCATGATCGGGGTAAAAGATCGAATAGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * * * ** * * *
16131878 ATCTGCCCCAAGCTCAGGGTAAGAGATTGGTTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* ** *
16131917 ATTTGCCCCAACCTCGGGGTAAAAGATCGAACGGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
* * **
16131956 ATTTGCCCCAGGCTCGGAGTAGGAGATCGAA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAA
16131987 ATCTTCAATC
Statistics
Matches: 655, Mismatches: 296, Indels: 26
0.67 0.30 0.03
Matches are distributed among these distances:
36 4 0.01
37 15 0.02
38 53 0.08
39 570 0.87
40 6 0.01
41 3 0.00
42 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (39 bp):
ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGGTTGTA
Found at i:16139572 original size:12 final size:13
Alignment explanation
Indices: 16139555--16139583 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
16139545 TCTTTTTGAA
16139555 TTTGCTCTA-GCC
1 TTTGCTCTATGCC
16139567 TTTGCTCTATGCC
1 TTTGCTCTATGCC
16139580 TTTG
1 TTTG
16139584 GTTTTTTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.07, C:0.28, G:0.17, T:0.48
Consensus pattern (13 bp):
TTTGCTCTATGCC
Found at i:16139774 original size:17 final size:17
Alignment explanation
Indices: 16139749--16139782 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
16139739 CAATTCCATT
*
16139749 AGAACAACTTCTCTAGA
1 AGAAAAACTTCTCTAGA
*
16139766 AGAAAAACTTCTTTAGA
1 AGAAAAACTTCTCTAGA
16139783 TAAAGTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (17 bp):
AGAAAAACTTCTCTAGA
Found at i:16143357 original size:29 final size:28
Alignment explanation
Indices: 16143325--16143592 Score: 143
Period size: 30 Copynumber: 9.1 Consensus size: 28
16143315 AAGATTGAAC
* *
16143325 TTTTGGAAAATTTGAGGTCGAAAATGTGA
1 TTTTGGAAAATTTGGGGTC-AAAATGTAA
* *
16143354 TTTT-TAGAAATTTGGGGGCAAAATGATAA
1 TTTTGGA-AAATTTGGGGTCAAAATG-TAA
*
16143383 CTTTTGGATGTAAA---AGGG-CAAAATGGTAAA
1 -TTTTGGA---AAATTTGGGGTCAAAAT-GT-AA
*
16143413 TTTTGGAGAATTTTGGGGTCAAAATGTAA
1 TTTTGGA-AAATTTGGGGTCAAAATGTAA
* * * *
16143442 TTTTGGAAATGTTTGGGGTGAAAATATGA
1 TTTTGGAAA-ATTTGGGGTCAAAATGTAA
* * * *
16143471 TTTTGGAAAGTTTAGGGTGAAAATGTGA
1 TTTTGGAAAATTTGGGGTCAAAATGTAA
*
16143499 TTTTGGAAAAGTTTAGGGGTCAATATGTAA
1 TTTTGGAAAA-TTT-GGGGTCAAAATGTAA
* * * *
16143529 TTTTGGAGAAGTTTAAGGCTTAAAATGTAA
1 TTTTGGA-AAATTT-GGGGTCAAAATGTAA
* *
16143559 TTTT-GAAGAAGTTTAGGGGTTAAAATGTGA
1 TTTTGGAA-AA-TTT-GGGGTCAAAATGTAA
16143589 TTTT
1 TTTT
16143593 TAAAGAAAAT
Statistics
Matches: 191, Mismatches: 30, Indels: 35
0.75 0.12 0.14
Matches are distributed among these distances:
27 2 0.01
28 36 0.19
29 69 0.36
30 72 0.38
31 9 0.05
33 3 0.02
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (28 bp):
TTTTGGAAAATTTGGGGTCAAAATGTAA
Found at i:16143534 original size:30 final size:30
Alignment explanation
Indices: 16143401--16143592 Score: 187
Period size: 30 Copynumber: 6.5 Consensus size: 30
16143391 TGTAAAAGGG
* *
16143401 CAAAATGGTAAATTTTGGAGAA-TTTTGGGGT
1 CAAAAT-GT-AATTTTGGAAAAGTTTAGGGGT
*
16143432 CAAAATGTAATTTTGGAAATGTTT-GGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAGGGGT
* * *
16143461 GAAAATATGATTTTGG-AAAGTTTA-GGGT
1 CAAAATGTAATTTTGGAAAAGTTTAGGGGT
* *
16143489 GAAAATGTGATTTTGGAAAAGTTTAGGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAGGGGT
* * * *
16143519 CAATATGTAATTTTGGAGAAGTTTAAGGCT
1 CAAAATGTAATTTTGGAAAAGTTTAGGGGT
*
16143549 TAAAATGTAATTTT-GAAGAAGTTTAGGGGT
1 CAAAATGTAATTTTGGAA-AAGTTTAGGGGT
* *
16143579 TAAAATGTGATTTT
1 CAAAATGTAATTTT
16143593 TAAAGAAAAT
Statistics
Matches: 137, Mismatches: 19, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
28 25 0.18
29 38 0.28
30 68 0.50
31 6 0.04
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.37
Consensus pattern (30 bp):
CAAAATGTAATTTTGGAAAAGTTTAGGGGT
Found at i:16144419 original size:13 final size:14
Alignment explanation
Indices: 16144397--16144428 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
16144387 AAATTTGTTT
16144397 TTTTTGTATTTTCG
1 TTTTTGTATTTTCG
16144411 TTTTT-TATTTTCG
1 TTTTTGTATTTTCG
16144424 TTTTT
1 TTTTT
16144429 AATCTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.06, C:0.06, G:0.09, T:0.78
Consensus pattern (14 bp):
TTTTTGTATTTTCG
Found at i:16144573 original size:3 final size:3
Alignment explanation
Indices: 16144565--16144617 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
16144555 TCGAATCTCT
* *
16144565 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
16144613 TTA TT
1 TTA TT
16144618 TTCAAAGAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:16146144 original size:378 final size:379
Alignment explanation
Indices: 16145428--16146128 Score: 831
Period size: 378 Copynumber: 1.9 Consensus size: 379
16145418 CTTGACACAA
* * * * *
16145428 AAGAAGATCAAAGAAAAGGGTTTATATCAAAAGTGAGGATGAAAACAAGGAATGAAGCCTTTAAA
1 AAGAAGATCAAACAAAAGAGTTTAGATAAAAAGTGAGGATGAAAACAAGGAACGAAGCCTTTAAA
* * *
16145493 GGAAATAAACATGATTGTATAAGCATCCCTAAACTCTTTTTATGTTTTGTTTCCCCCTTTTATTC
66 GGAAATAAACATGATTGTATAAGCATCCCCAAACTCTTTCTATGTTTTGCTTCCCCCTTTTATTC
* ** * * **
16145558 CCTCAACGCATATTTGAAACTTGAATTGGGGTGAAATTTGACAATGCAAAACAGGTGATAAATTT
131 ACTCAACGCATATAGGAAACTTGAATTGGGGTGAAAGTTGACAATGCAAAACAAGTGATAAATAA
* * * * **
16145623 TGTTAAAAAATAAAAGAGAAACACATGTCATTTGTGATATTTAAGCAAACATTCCAATGAAAGAT
196 TGCTAAAAAATAAAACAAAAACACATATCATTTGAAATATTTAAGCAAACATTCCAATGAAAGAT
* * ** *
16145688 TAGAGTCGTAATTACAGTGTAAACAACCGACAAATATGGAAGGAAGCAGTTATCTTGATTGGCCT
261 TAGAGTCATAATTACAGTGGAAACAACAAACAAATATGGAAGGAAGCAGTTATCATGATTGGCCT
16145753 CAAACCAATTGGATTCTATGCATTTTCAGACGTGACACAAAATACTTGAAACTG
326 CAAACCAATTGGATTCTATGCATTTTCAGACGTGACACAAAATACTTGAAACTG
* * *
16145807 AAGAAGATCAAACAAAATAGTTTAGATAAAAAGTGAGG-TTAAGAACAAGGAGCGAAGCCTTTAA
1 AAGAAGATCAAACAAAAGAGTTTAGATAAAAAGTGAGGATGAA-AACAAGGAACGAAGCCTTTAA
* *
16145871 GGGAAATAGACATGATTGTATAAGCA-CCCCAAACTCTTTCTATGTTATT-CTTCCACCC-TTTA
65 AGGAAATAAACATGATTGTATAAGCATCCCCAAACTCTTTCTATGTT-TTGCTTCC-CCCTTTTA
**** * * * * * *
16145933 TTCACTTGGTGCGTATAGGAATCTTTAATTGTGGTGAAAGTTGATAATGCAAAACAAGTGATATA
128 TTCACTCAACGCATATAGGAAACTTGAATTGGGGTGAAAGTTGACAATGCAAAACAAGTGATAAA
* * *
16145998 TAATGCTAAAAAATAAAACAAAAACTA-ATAT-TTTTGAAAATATTTAAGCGAACTTTCCAATGA
193 TAATGCTAAAAAATAAAACAAAAAC-ACATATCATTTG-AAATATTTAAGCAAACATTCCAATGA
* * * * * * * *
16146061 ATGATTATAGTCATTATTACATTGGAAACAACAAACAAATATTGCAGGGAGCAAG-TATCATGGT
256 AAGATTAGAGTCATAATTACAGTGGAAACAACAAACAAATATGGAAGGAAGC-AGTTATCATGAT
16146125 TGGC
320 TGGC
16146129 TTTTAACCGA
Statistics
Matches: 264, Mismatches: 52, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
377 4 0.02
378 176 0.67
379 84 0.32
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (379 bp):
AAGAAGATCAAACAAAAGAGTTTAGATAAAAAGTGAGGATGAAAACAAGGAACGAAGCCTTTAAA
GGAAATAAACATGATTGTATAAGCATCCCCAAACTCTTTCTATGTTTTGCTTCCCCCTTTTATTC
ACTCAACGCATATAGGAAACTTGAATTGGGGTGAAAGTTGACAATGCAAAACAAGTGATAAATAA
TGCTAAAAAATAAAACAAAAACACATATCATTTGAAATATTTAAGCAAACATTCCAATGAAAGAT
TAGAGTCATAATTACAGTGGAAACAACAAACAAATATGGAAGGAAGCAGTTATCATGATTGGCCT
CAAACCAATTGGATTCTATGCATTTTCAGACGTGACACAAAATACTTGAAACTG
Found at i:16147218 original size:378 final size:377
Alignment explanation
Indices: 16146503--16147306 Score: 1041
Period size: 378 Copynumber: 2.1 Consensus size: 377
16146493 AATACTTTAA
*
16146503 ACAATGCAAAACAAGTGATAAATAATGTACAAAAATAAAAGAGAAACACATGTTTTTGGAGATAT
1 ACAATGCAAAACAAGTGATAAATAATTTA-AAAAATAAAAGAGAAACACATGTTTTTGGAGATAT
* * * * *
16146568 TTAAGCGAACTTTTCGTTAAAAGATTAGAGTCATAATTAAAATGGAAACAACAGACAAGTATGGT
65 TCAAGCGAACTTTTCGTTAAAAGATTAGAGACATAATCAAAATGGAAACAACAAACAAGTATGCT
* * * * *
16146633 ACGAAACAGTTATATTGGTTGGCCTCTAACCAATTGGATATTCTACATTTCAGACATTATACAAA
130 ACGAAACAGGTATATTGGTTGGCCTCTAACCAATTGAATACTCCACATTTCAGACATTACACAAA
* *
16146698 ATGCTTCAAACAAAAGAAGATCAAAGAAAACAATTTATATTGAAAGTGAAGTTGAAAATAGGGAG
195 ATCCTTCAAACAAAAGAAGATCAAAGAAAACAATTTATATCGAAAGTGAAGTTGAAAATAGGGAG
* * * * *
16146763 CGAACCCTTTTAGGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTTTTTGTTTTGTTTC
260 CGAACCCTTTAAGGAAATAGACATGATTGTATAAACACCCCAAAAATCTTTTTATGTTTTGTTTC
* * * *
16146828 CCCTCATTTTTTCACTCGGCTCGTATC-TGAAAGTTGAATTGTGGTGAAATTTG
325 CCCTCATTTTTTCACTCGGCTCGTA-CAAGAAACTTGAATTATGGTGAAAGTTG
*
16146881 ACAATGCAAAACAAGTGATAAATATATTTAAAAAATAAAAGAGAAACACATGTTTTTGGTGATAT
1 ACAATGCAAAACAAGTGATAAATA-ATTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATAT
* *
16146946 TCAAGCGAAC-TTTCTGTTGAAAGATTAGAGACATAATCACAATGGAAACAACAAACTAA-TATG
65 TCAAGCGAACTTTTC-GTTAAAAGATTAGAGACATAATCAAAATGGAAACAACAAAC-AAGTATG
* ** * * *
16147009 CTAGGAAGTAGGTATCTTGGTTGGCTTCTAACCAATTGAATACTCCGCATTTTCAGAC-TTGACA
128 CTACGAAACAGGTATATTGGTTGGCCTCTAACCAATTGAATACTCCACA-TTTCAGACATT-ACA
* * * * * *
16147073 CAAAATCCTTGAAACAAAAGATGATCAAAGAAAATAATTTATATCGAAAGTGAGGTTTAAAATGG
191 CAAAATCCTTCAAACAAAAGAAGATCAAAGAAAACAATTTATATCGAAAGTGAAGTTGAAAATAG
* * *
16147138 GGAGCGAAGCCTTTAATTGCAATAGACATGATTGTATAAACACCCCAAAAATCTTTTTATGTTTT
256 GGAGCGAACCCTTTAA-GGAAATAGACATGATTGTATAAACACCCCAAAAATCTTTTTATGTTTT
*
16147203 -TTTCCACC-C-TTTTTTCACTTGGCTCGTACAAGAAACTTGAATTATGGTGAAAGTTG
320 GTTTCC-CCTCATTTTTTCACTCGGCTCGTACAAGAAACTTGAATTATGGTGAAAGTTG
* * *
16147259 ACAACGTAAAACAACG-GATATATAATGTTAAAAAAGTAAAAGA-AAACA
1 ACAATGCAAAACAA-GTGATAAATAAT-TTAAAAAA-TAAAAGAGAAACA
16147307 ATTAATGTTT
Statistics
Matches: 371, Mismatches: 44, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
377 7 0.02
378 219 0.59
379 101 0.27
380 44 0.12
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (377 bp):
ACAATGCAAAACAAGTGATAAATAATTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATT
CAAGCGAACTTTTCGTTAAAAGATTAGAGACATAATCAAAATGGAAACAACAAACAAGTATGCTA
CGAAACAGGTATATTGGTTGGCCTCTAACCAATTGAATACTCCACATTTCAGACATTACACAAAA
TCCTTCAAACAAAAGAAGATCAAAGAAAACAATTTATATCGAAAGTGAAGTTGAAAATAGGGAGC
GAACCCTTTAAGGAAATAGACATGATTGTATAAACACCCCAAAAATCTTTTTATGTTTTGTTTCC
CCTCATTTTTTCACTCGGCTCGTACAAGAAACTTGAATTATGGTGAAAGTTG
Found at i:16150024 original size:370 final size:374
Alignment explanation
Indices: 16149311--16150030 Score: 803
Period size: 379 Copynumber: 1.9 Consensus size: 374
16149301 AAGAACTTAA
* * * * * *
16149311 ACTTGACACAAAAGAAGATCAAAGAAAAGGGTTGATATCAAAAGTGAGGAAGAAAACATGGAGTA
1 ACTTGAAAAAAAAGAAGATCAAACAAAAGAGTTGATATAAAAAGTGAGGAAGAAAACATGGAGCA
* * *
16149376 AAGCCTCTAAGGGAAATAAACATGATTGTATAAGTATCCCTAAACTCTTTTATGTTTTGTTTCCC
66 AAGCCTCTAAGGGAAATAAACATGATTGCATAAGCATCCCAAAACTCTTTTATGTTTTGTTTCCC
* ** * *
16149441 CCCCTTTATTCACTCGATGCGTATTTGAAACTTGAATTGTGGTGAAATTTTACAATGCAAAACAA
131 ACCCTTTATTCACTCGATGCGTATAGGAAACTTGAATTGTGGTGAAAGTTGACAATGCAAAACAA
* * ** *
16149506 GTGATAAATAATGTTAAAAAATAAAATAGAAACACATGTTTTTTGTGATATTTAAGCGAACATTC
196 GTGATAAATAATCTTAAAAAATAAAAT----A-ACATGTTTTTCGAAATATTTAAACGAACATTC
* * * * * * * *
16149571 CAATGATAGATTAGAGTCGTAATTACAGTGGCAACAACAAACGAATATGGTAGTAACCAATTATC
256 CAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAATATGGTAGGAACCAAGTATA
16149636 TCGATTGGCCTCTAACCAATTGGATTCTTTGCATTTTTAAACGTGGCACAAAAT
321 TCGATTGGCCTCTAACCAATTGGATTCTTTGCATTTTTAAACGTGGCACAAAAT
* * * *
16149690 ACTTGAAAAAAAAGAAGATCAAACAAAATAGTTTATATAAAAAGTGAGGATGAGAACA-GAGAGC
1 ACTTGAAAAAAAAGAAGATCAAACAAAAGAGTTGATATAAAAAGTGAGGAAGAAAACATG-GAGC
* * * *
16149754 GAAGCCTTTAAGGGAAATAGACTTGATTGCATAAGCA-CCCAAAACTCTTTCTATGTTTT-TCTT
65 AAAGCCTCTAAGGGAAATAAACATGATTGCATAAGCATCCCAAAACTCTTT-TATGTTTTGT-TT
* * *
16149817 -CCACCCTTTATTCACTCGGTGCG-ACTAGGAATCTTTAATTGTGGTGAAAGTTGACAATGCAAA
128 CCCACCCTTTATTCACTCGATGCGTA-TAGGAAACTTGAATTGTGGTGAAAGTTGACAATGCAAA
* * * * * *
16149880 ACAAGTGGTATATAATCTTCAAAAA-AAACT-A-ATG-TTTTCGAAAATATTTAAATGAACTTTC
192 ACAAGTGATAAATAATCTTAAAAAATAAAATAACATGTTTTTCG-AAATATTTAAACGAACATTC
* * * * * *
16149941 CAATGAAAGATTAGAGTCATTATTACAATGGAAACAATAGACAAATATGGTAGGGAGCAGGTATA
256 CAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAATATGGTAGGAACCAAGTAT-
* *
16150006 AT-GGTTGGCCTTTAACCAATTGGAT
320 ATCGATTGGCCTCTAACCAATTGGAT
16150031 AATCTGCATT
Statistics
Matches: 283, Mismatches: 52, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
369 5 0.02
370 90 0.32
371 2 0.01
377 5 0.02
378 88 0.31
379 93 0.33
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (374 bp):
ACTTGAAAAAAAAGAAGATCAAACAAAAGAGTTGATATAAAAAGTGAGGAAGAAAACATGGAGCA
AAGCCTCTAAGGGAAATAAACATGATTGCATAAGCATCCCAAAACTCTTTTATGTTTTGTTTCCC
ACCCTTTATTCACTCGATGCGTATAGGAAACTTGAATTGTGGTGAAAGTTGACAATGCAAAACAA
GTGATAAATAATCTTAAAAAATAAAATAACATGTTTTTCGAAATATTTAAACGAACATTCCAATG
AAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAATATGGTAGGAACCAAGTATATCGAT
TGGCCTCTAACCAATTGGATTCTTTGCATTTTTAAACGTGGCACAAAAT
Found at i:16150041 original size:370 final size:374
Alignment explanation
Indices: 16149311--16150042 Score: 800
Period size: 370 Copynumber: 2.0 Consensus size: 374
16149301 AAGAACTTAA
* * * * * *
16149311 ACTTGACACAAAAGAAGATCAAAGAAAAGGGTTGATATCAAAAGTGAGGAAGAAAACATGGAGTA
1 ACTTGAAAAAAAAGAAGATCAAACAAAAGAGTTGATATAAAAAGTGAGGAAGAAAACATGGAGCA
* * *
16149376 AAGCCTCTAAGGGAAATAAACATGATTGTATAAGTATCCCTAAACTCTTTTATGTTTTGTTTCCC
66 AAGCCTCTAAGGGAAATAAACATGATTGCATAAGCATCCCAAAACTCTTTTATGTTTTGTTTCCC
* ** * *
16149441 CCCCTTTATTCACTCGATGCGTATTTGAAACTTGAATTGTGGTGAAATTTTACAATGCAAAACAA
131 ACCCTTTATTCACTCGATGCGTATAGGAAACTTGAATTGTGGTGAAAGTTGACAATGCAAAACAA
* * ** *
16149506 GTGATAAATAATGTTAAAAAATAAAATAGAAACACATGTTTTTTGTGATATTTAAGCGAACATTC
196 GTGATAAATAATCTTAAAAAATAAAAT----A-ACATGTTTTTCGAAATATTTAAACGAACATTC
* * * * * * * *
16149571 CAATGATAGATTAGAGTCGTAATTACAGTGGCAACAACAAACGAATATGGTAGTAACCAATTATC
256 CAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAATATGGTAGGAACCAAGTATA
** *
16149636 TCGATTGGCCTCTAACCAATTGGATTCTTTGCATTTTTAAACGTGGCACAAAAT
321 TCGATTGGCCTCTAACCAATTGGATAATCTGCATTTTTAAACGTGGCACAAAAT
* * * *
16149690 ACTTGAAAAAAAAGAAGATCAAACAAAATAGTTTATATAAAAAGTGAGGATGAGAACA-GAGAGC
1 ACTTGAAAAAAAAGAAGATCAAACAAAAGAGTTGATATAAAAAGTGAGGAAGAAAACATG-GAGC
* * * *
16149754 GAAGCCTTTAAGGGAAATAGACTTGATTGCATAAGCA-CCCAAAACTCTTTCTATGTTTT-TCTT
65 AAAGCCTCTAAGGGAAATAAACATGATTGCATAAGCATCCCAAAACTCTTT-TATGTTTTGT-TT
* * *
16149817 -CCACCCTTTATTCACTCGGTGCG-ACTAGGAATCTTTAATTGTGGTGAAAGTTGACAATGCAAA
128 CCCACCCTTTATTCACTCGATGCGTA-TAGGAAACTTGAATTGTGGTGAAAGTTGACAATGCAAA
* * * * * *
16149880 ACAAGTGGTATATAATCTTCAAAAA-AAACT-A-ATG-TTTTCGAAAATATTTAAATGAACTTTC
192 ACAAGTGATAAATAATCTTAAAAAATAAAATAACATGTTTTTCG-AAATATTTAAACGAACATTC
* * * * * *
16149941 CAATGAAAGATTAGAGTCATTATTACAATGGAAACAATAGACAAATATGGTAGGGAGCAGGTATA
256 CAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAATATGGTAGGAACCAAGTAT-
* *
16150006 AT-GGTTGGCCTTTAACCAATTGGATAATCTGCATTTT
320 ATCGATTGGCCTCTAACCAATTGGATAATCTGCATTTT
16150043 CGGACACTTT
Statistics
Matches: 292, Mismatches: 55, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
369 5 0.02
370 99 0.34
371 2 0.01
377 5 0.02
378 88 0.30
379 93 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (374 bp):
ACTTGAAAAAAAAGAAGATCAAACAAAAGAGTTGATATAAAAAGTGAGGAAGAAAACATGGAGCA
AAGCCTCTAAGGGAAATAAACATGATTGCATAAGCATCCCAAAACTCTTTTATGTTTTGTTTCCC
ACCCTTTATTCACTCGATGCGTATAGGAAACTTGAATTGTGGTGAAAGTTGACAATGCAAAACAA
GTGATAAATAATCTTAAAAAATAAAATAACATGTTTTTCGAAATATTTAAACGAACATTCCAATG
AAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAATATGGTAGGAACCAAGTATATCGAT
TGGCCTCTAACCAATTGGATAATCTGCATTTTTAAACGTGGCACAAAAT
Found at i:16153037 original size:375 final size:379
Alignment explanation
Indices: 16152342--16153038 Score: 863
Period size: 375 Copynumber: 1.8 Consensus size: 379
16152332 AAAAAAAAGG
* * *
16152342 GTTTATATCAAAAGCGATGATGAAAACAAGGAATGAAGCCTTTAAGGGAAATGAACATGATTGTA
1 GTTTATATAAAAAGCGAGGATGAAAACAAGGAACGAAGCCTTTAAGGGAAATGAACATGATTGTA
* * ** *
16152407 TAAGTATTCCTAAACTCTTTTTATGTTTTGTTTCTCCCCTTTATTCACTCGACGCGTATATGAAA
66 TAAGCATGCCTAAACTCTTTCCATGTTTTGTTTCTCCCCTTTATTCACTCGACGCGTATAGGAAA
* * **
16152472 CTTGAATTGTGGTGAAATTTGATAATTCAAAACAAGTGATAAAGAATGTTAAAAAATAAAAAAAA
131 CTTGAATTGTGGTGAAAGTTGACAATGAAAAACAAGTGATAAAGAATGTTAAAAAAT-AAAAAAA
** * *
16152537 GAAACACATGTTTTTTGTGATATTTAAGCGAACATTCAAATGAAAGGTTAGAGTAGTAATTACAG
195 GAAACACATGTTTTTTGAAATATTTAAGCGAACATTCAAATGAAAGATTAGAGTAGTAATTACAA
** * **
16152602 TGGAAACAACCGACAAATATGGCAGAAAGCAGTTATCTTGGTTGGCCTCTAACCAATTGGATTCT
260 TGGAAACAAAAGACAAATATGGCAGAAAGCAGGTATAATGGTTGGCCTCTAACCAATTGGATTCT
16152667 GTGTATTTTCAAACGTGACACAAAATACTTGAAAAAAAGGAGATCAAAGAAAATA
325 GTGTATTTTCAAACGTGACACAAAATACTTGAAAAAAAGGAGATCAAAGAAAATA
* * * *
16152722 GTTTATATAAAAAGTGAGGATGAGAACAGGGAGCGAAGCCTTTAAGGGAAAT-AGACATGATTGT
1 GTTTATATAAAAAGCGAGGATGAAAACAAGGAACGAAGCCTTTAAGGGAAATGA-ACATGATTGT
* * * ** *
16152786 ATCAGCATGCC-AAACTCTTTCCAT-TTTT-TTCTTTCAGCCTTTATTCACTCGGTGTGTATAGG
65 ATAAGCATGCCTAAACTCTTTCCATGTTTTGTT-TCTC-CCCTTTATTCACTCGACGCGTATAGG
* * * * *
16152848 AATCTTGAATTGTGGTGAAAGTTGACAATGAAAAACAAGTGGTATATAATGTTCAAAAAT-AAAA
128 AAACTTGAATTGTGGTGAAAGTTGACAATGAAAAACAAGTGATAAAGAATGTTAAAAAATAAAAA
* * * *
16152912 AA-AAATA-ATG-TTTTTGAAAATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCA-TTATT
193 AAGAAACACATGTTTTTTG-AAATATTTAAGCGAACATTCAAATGAAAGATTAGAGT-AGTAATT
* * * ** *
16152973 ACAATGGAAACAAAAGACGACTATGGTAGGGAGCAGGTATAATGGTTGGCCTTTAACCAATTGGA
256 ACAATGGAAACAAAAGACAAATATGGCAGAAAGCAGGTATAATGGTTGGCCTCTAACCAATTGGA
16153038 T
321 T
16153039 ACTCTGCATT
Statistics
Matches: 266, Mismatches: 46, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
374 6 0.02
375 93 0.35
376 5 0.02
377 8 0.03
378 7 0.03
379 84 0.32
380 63 0.24
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.30
Consensus pattern (379 bp):
GTTTATATAAAAAGCGAGGATGAAAACAAGGAACGAAGCCTTTAAGGGAAATGAACATGATTGTA
TAAGCATGCCTAAACTCTTTCCATGTTTTGTTTCTCCCCTTTATTCACTCGACGCGTATAGGAAA
CTTGAATTGTGGTGAAAGTTGACAATGAAAAACAAGTGATAAAGAATGTTAAAAAATAAAAAAAG
AAACACATGTTTTTTGAAATATTTAAGCGAACATTCAAATGAAAGATTAGAGTAGTAATTACAAT
GGAAACAAAAGACAAATATGGCAGAAAGCAGGTATAATGGTTGGCCTCTAACCAATTGGATTCTG
TGTATTTTCAAACGTGACACAAAATACTTGAAAAAAAGGAGATCAAAGAAAATA
Found at i:16154860 original size:59 final size:59
Alignment explanation
Indices: 16154797--16154982 Score: 234
Period size: 59 Copynumber: 3.2 Consensus size: 59
16154787 GCAAAATGGT
** * *
16154797 AATTTTTGGTGAAATCGGGGTCGAAAATGAAATTCTGGAAAATTTAGGGGTAAAATAGC
1 AATTTTTGGTGAAATCGGGGTTAAAAATGAAATTTTGGAAAGTTTAGGGGTAAAATAGC
* * * *
16154856 AA-TTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAATGGTC
1 AATTTTTGGTGAAATCGGGGTTAAAAATGAAATTTTGGAAAGTTTAGGGGTAAAATAG-C
* *
16154915 -ATTTTTGGTGAAATCGGAGTTAAAAAT-AGAATTTTGGAAAGTTTAGGGGTAAAATAGGT
1 AATTTTTGGTGAAATCGGGGTTAAAAATGA-AATTTTGGAAAGTTTAGGGGTAAAATA-GC
16154974 AATTTTTGG
1 AATTTTTGG
16154983 AAGTTTTGGG
Statistics
Matches: 108, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
58 48 0.44
59 51 0.47
60 9 0.08
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.32
Consensus pattern (59 bp):
AATTTTTGGTGAAATCGGGGTTAAAAATGAAATTTTGGAAAGTTTAGGGGTAAAATAGC
Found at i:16154879 original size:29 final size:29
Alignment explanation
Indices: 16154847--16154951 Score: 69
Period size: 29 Copynumber: 3.6 Consensus size: 29
16154837 AATTTAGGGG
16154847 TAAAATAGCAATTTTGGTGAAATCGAGGT
1 TAAAATAGCAATTTTGGTGAAATCGAGGT
* *
16154876 TAAAA-ATGGAATTTT-G-GAAAGTTC-AGGGG
1 TAAAATA-GCAATTTTGGTGAAA--TCGA-GGT
* *
16154905 TAAAATGGTCATTTTTGGTGAAATCG-GAGT
1 TAAAATAG-CAATTTTGGTGAAATCGAG-GT
16154935 TAAAAATAG-AATTTTGG
1 T-AAAATAGCAATTTTGG
16154952 AAAGTTTAGG
Statistics
Matches: 57, Mismatches: 8, Indels: 22
0.66 0.09 0.25
Matches are distributed among these distances:
27 4 0.07
28 3 0.05
29 30 0.53
30 9 0.16
31 7 0.12
32 4 0.07
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (29 bp):
TAAAATAGCAATTTTGGTGAAATCGAGGT
Found at i:16154983 original size:31 final size:29
Alignment explanation
Indices: 16154946--16155040 Score: 97
Period size: 28 Copynumber: 3.2 Consensus size: 29
16154936 AAAAATAGAA
16154946 TTTTGGAAAGTTTAGGGGT-AAAATAGGTAAT
1 TTTTGG-AAGTTTAGGGGTCAAAAT--GTAAT
*
16154977 TTTTGGAAGTTTTGGGGTCAAAATGTAAT
1 TTTTGGAAGTTTAGGGGTCAAAATGTAAT
* * *
16155006 TTTCT--AAATTTTGGGGTCAAAATGCAAT
1 TTT-TGGAAGTTTAGGGGTCAAAATGTAAT
16155034 TTTTGGA
1 TTTTGGA
16155041 CTGTTTGGGG
Statistics
Matches: 57, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
27 1 0.02
28 24 0.42
29 9 0.16
30 12 0.21
31 11 0.19
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.40
Consensus pattern (29 bp):
TTTTGGAAGTTTAGGGGTCAAAATGTAAT
Found at i:16155048 original size:29 final size:28
Alignment explanation
Indices: 16154974--16155050 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
16154964 TAAAATAGGT
* *
16154974 AATTTTTGGAAGTTTTGGGGTCAAAATGT
1 AATTTTTGGATG-TTTGGGGTCAAAATGC
**
16155003 AATTTTCTAAAT-TTTGGGGTCAAAATGC
1 AATTTT-TGGATGTTTGGGGTCAAAATGC
16155031 AATTTTTGGACTGTTTGGGG
1 AATTTTTGGA-TGTTTGGGG
16155051 ACCTATAGAC
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
27 2 0.05
28 22 0.56
29 13 0.33
30 2 0.05
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.42
Consensus pattern (28 bp):
AATTTTTGGATGTTTGGGGTCAAAATGC
Found at i:16156185 original size:13 final size:13
Alignment explanation
Indices: 16156160--16156239 Score: 61
Period size: 13 Copynumber: 6.1 Consensus size: 13
16156150 TTCTTTTGCT
*
16156160 TATTTATTTATTAT
1 TATTTA-TTATTAA
16156174 TATTTATTATTAA
1 TATTTATTATTAA
** *
16156187 TGGTCATTATTAA
1 TATTTATTATTAA
* * *
16156200 TAATTATTAATAC
1 TATTTATTATTAA
* * *
16156213 CATTCATTATTAG
1 TATTTATTATTAA
16156226 TATTTATTATTAA
1 TATTTATTATTAA
16156239 T
1 T
16156240 GCTATTAAAA
Statistics
Matches: 49, Mismatches: 17, Indels: 1
0.73 0.25 0.01
Matches are distributed among these distances:
13 43 0.88
14 6 0.12
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (13 bp):
TATTTATTATTAA
Found at i:16156206 original size:26 final size:25
Alignment explanation
Indices: 16156167--16156240 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 25
16156157 GCTTATTTAT
*
16156167 TTATTATTATTTATTATTAATGGTCA
1 TTATTAATATTTATTATTAAT-GTCA
* *
16156193 TTATTAATAATTATTAATACCAT-TCA
1 TTATTAATATTTATTATTA--ATGTCA
*
16156219 TTATTAGTATTTATTATTAATG
1 TTATTAATATTTATTATTAATG
16156241 CTATTAAAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
24 2 0.05
26 35 0.90
28 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (25 bp):
TTATTAATATTTATTATTAATGTCA
Found at i:16156576 original size:27 final size:27
Alignment explanation
Indices: 16156538--16156662 Score: 214
Period size: 27 Copynumber: 4.6 Consensus size: 27
16156528 AGGTTTTTTT
*
16156538 AGAACAGGGTTTGTAATTGTGTATTCA
1 AGAACAGGGTTTGTAACTGTGTATTCA
*
16156565 AGAACAGGGTTTGTAATTGTGTATTCA
1 AGAACAGGGTTTGTAACTGTGTATTCA
*
16156592 AGAACAGGGTTTGTAACGGTGTATTCA
1 AGAACAGGGTTTGTAACTGTGTATTCA
*
16156619 AGAACAGGGTTTGTAACCGTGTATTCA
1 AGAACAGGGTTTGTAACTGTGTATTCA
16156646 AGAACAGGGTTTGTAAC
1 AGAACAGGGTTTGTAAC
16156663 CCCTTTACAA
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.32
Consensus pattern (27 bp):
AGAACAGGGTTTGTAACTGTGTATTCA
Found at i:16157070 original size:12 final size:13
Alignment explanation
Indices: 16157047--16157102 Score: 51
Period size: 15 Copynumber: 4.0 Consensus size: 13
16157037 ACTTTGGACT
16157047 TTTTTAATTTAAA
1 TTTTTAATTTAAA
16157060 TTTTTAA-TTAAA
1 TTTTTAATTTAAA
*
16157072 TTTAAATTTATTTCAAA
1 TTT---TTAATTT-AAA
16157089 TATTTTAATTTAAA
1 T-TTTTAATTTAAA
16157103 ATGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
12 8 0.23
13 7 0.20
14 3 0.09
15 9 0.26
16 2 0.06
17 4 0.11
18 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTTTAATTTAAA
Found at i:16157840 original size:200 final size:200
Alignment explanation
Indices: 16157475--16157923 Score: 756
Period size: 200 Copynumber: 2.2 Consensus size: 200
16157465 TTCATTGACC
* * * * ** *
16157475 TGGTCTTCTTCACTGTGTCTCATCAGGAAGATGACCGCAATCATTTGTTTTAATTCGCTTCTCTG
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACCGC-CTCGCTTGTTTCAATTCGCTTCTCTG
* * *
16157540 GATCTCCTCAGGAAGTCGAATTTGGTCCACTTCTCTGGATCTCCTCAGGAAGCTAACCTTTTTAT
65 GATCTCCTCAGGAAGACGAATCTGGTCCACTTCTCTGGATCTCCTCAGGAAGCTAACCATTTTAT
*
16157605 TGCTTCGACCTGCTTCTCAATGTCTCATTAGGAAGCCAGGTTCGAAGATTTGCTCACATTGAGCG
130 TGCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGCCAGGTTCGAAGATTTGCTCACATTGAGCG
16157670 TTGAGT
195 TTGAGT
*
16157676 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTCGATTCGCTTCTCTGG
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTCAATTCGCTTCTCTGG
16157741 ATCTCCTCAGGAAGACGAATCTGGTCCACTTCTCTGGATCTCCTCAGGAAGCTAACCATTTTATT
66 ATCTCCTCAGGAAGACGAATCTGGTCCACTTCTCTGGATCTCCTCAGGAAGCTAACCATTTTATT
* *
16157806 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCCGGGTTCGAAGATTTGCTCACATTGAGCGT
131 GCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGCCAGGTTCGAAGATTTGCTCACATTGAGCGT
16157871 TGAGT
196 TGAGT
16157876 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGC-TGTTT
1 TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTT
16157924 ATGTATAATC
Statistics
Matches: 234, Mismatches: 14, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
199 5 0.02
200 194 0.83
201 35 0.15
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (200 bp):
TGGTGTTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGCTTGTTTCAATTCGCTTCTCTGG
ATCTCCTCAGGAAGACGAATCTGGTCCACTTCTCTGGATCTCCTCAGGAAGCTAACCATTTTATT
GCTTCGACCTGCTTCTCAATGTCTCATCAGGAAGCCAGGTTCGAAGATTTGCTCACATTGAGCGT
TGAGT
Found at i:16158321 original size:76 final size:76
Alignment explanation
Indices: 16158238--16158826 Score: 855
Period size: 76 Copynumber: 7.8 Consensus size: 76
16158228 CCCTTTTAGT
* *
16158238 GAGATAAATG-CTTGCTATCCAACTTTACTTCAATTTTAAGAGGATAGGAAATGATCTTGCTCTT
1 GAGATAAA-GACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
**
16158302 ACTTTGATTTCA
65 ACTTCAATTTCA
* * * * * **
16158314 AAGATAAAGACTTGTTATCCAACTCTACTTCAATCTCAAGAGGATGGGAACCGATCTTGCTCTTA
1 GAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTA
*
16158379 CTTTAATTTCA
66 CTTCAATTTCA
* *
16158390 GAGATAAAGACTTGATATCCAGCTTTATTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTA
1 GAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTA
16158455 CTTCAATTTCA
66 CTTCAATTTCA
* *
16158466 GAGACAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTA
1 GAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTA
16158531 CTTCAATTTCA
66 CTTCAATTTCA
* * *
16158542 GAGACAAAGACCTGATATCCAA-TTCTACTTCAATTTCAAGAGGACAGGAAATGATCTTGCTCTT
1 GAGATAAAGACTTGATATCCAACTT-TACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTT
16158606 ACTTCAATTTCA
65 ACTTCAATTTCA
* * * * *
16158618 GAGATAAAGACGTGTTATCC-ACTCTACTTCGATTTCAAGAGGATAGGAAAAGATCTTGCTCTTA
1 GAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTA
16158682 CTTCAATTTCA
66 CTTCAATTTCA
* * * *
16158693 GAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATAGGAAAAGATCTTGCTCTTA
1 GAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTA
16158757 CTTCAATTTCA
66 CTTCAATTTCA
*
16158768 GAGATAAAGACTT-AGTATCCAACTTTACTTCAATTTCAAGAGGATAGGAAAAGATCTTG
1 GAGATAAAGACTTGA-TATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTG
16158827 GTGCGGTCTG
Statistics
Matches: 473, Mismatches: 35, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
75 143 0.30
76 330 0.70
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (76 bp):
GAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGGAAATGATCTTGCTCTTA
CTTCAATTTCA
Found at i:16158796 original size:38 final size:37
Alignment explanation
Indices: 16158371--16158805 Score: 221
Period size: 38 Copynumber: 11.5 Consensus size: 37
16158361 GAACCGATCT
* *
16158371 TGCTCTTACTTTAATTTCAGAGATAAAGACTTGATATCC
1 TGCT-TTACTTCAATTTCAGAGATAAAGACATG-TATCC
* * * * *
16158410 AGCTTTATTTCAATTTCAAGAGGAT-AGGAAATG-ATCT
1 TGCTTTACTTCAATTTC-AGA-GATAAAGACATGTATCC
* *
16158447 TGCTCTTACTTCAATTTCAGAGACAAAGACTTGATATCC
1 TGCT-TTACTTCAATTTCAGAGATAAAGACATG-TATCC
* * * *
16158486 AGCTTTACTTCAATTTCAAGAGGAT-AGGAAATG-ATCT
1 TGCTTTACTTCAATTTC-AGA-GATAAAGACATGTATCC
* *
16158523 TGCTCTTACTTCAATTTCAGAGACAAAGACCTGATATCC
1 TGCT-TTACTTCAATTTCAGAGATAAAGACATG-TATCC
** * * * *
16158562 -AATTCTACTTCAATTTCAAGAGGA-CAGGAAATG-ATCT
1 TGCTT-TACTTCAATTTC-AGA-GATAAAGACATGTATCC
*
16158599 TGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC
1 TGCT-TTACTTCAATTTCAGAGATAAAGACATG-TATCC
* * * * * * *
16158638 -ACTCTACTTCGATTTCAAGAGGAT-AGGAAAAG-ATCT
1 TGCTTTACTTCAATTTC-AGA-GATAAAGACATGTATCC
*
16158674 TGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC
1 TGCT-TTACTTCAATTTCAGAGATAAAGACATG-TATCC
* * * * * *
16158713 -ACTCTACTTCAATTTCAAGAGGAT-AGGAAAAG-ATCT
1 TGCTTTACTTCAATTTC-AGA-GATAAAGACATGTATCC
*
16158749 TGCTCTTACTTCAATTTCAGAGATAAAGACTTAGTATCC
1 TGCT-TTACTTCAATTTCAGAGATAAAGACAT-GTATCC
**
16158788 AACTTTACTTCAATTTCA
1 TGCTTTACTTCAATTTCA
16158806 AGAGGATAGG
Statistics
Matches: 290, Mismatches: 72, Indels: 69
0.67 0.17 0.16
Matches are distributed among these distances:
36 18 0.06
37 80 0.28
38 131 0.45
39 54 0.19
40 7 0.02
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34
Consensus pattern (37 bp):
TGCTTTACTTCAATTTCAGAGATAAAGACATGTATCC
Found at i:16171049 original size:58 final size:57
Alignment explanation
Indices: 16170968--16171221 Score: 301
Period size: 58 Copynumber: 4.3 Consensus size: 57
16170958 TTGGACTTAC
* **
16170968 GGGGCAAAATGGTAATTTTTGGTGAAATCGGTGTCGAAAATAGAATTTTGGAAAATTTA
1 GGGGTAAAATGGTAA-TTTTGGTGAAATCGG-GTTAAAAATAGAATTTTGGAAAATTTA
* * *
16171027 GGGGTAAAATGGCAATTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCA
1 GGGGTAAAATGGTAATTTTGGTGAAATC-GGGTTAAAAATAGAATTTTGGAAAATTTA
* * * * *
16171085 AGGGTAAAATGGTCATTTTTGGTGAAATCGAGGTTAAAACTGGAATTTTGGGAAATTTA
1 GGGGTAAAATGGT-AATTTTGGTGAAATCG-GGTTAAAAATAGAATTTTGGAAAATTTA
* * * * *
16171144 GGGGTAAAATTGTAATTTTTGGTGAAATTGGGTTAAAAATGGAATTTTGGAAAGTTTG
1 GGGGTAAAATGGTAA-TTTTGGTGAAATCGGGTTAAAAATAGAATTTTGGAAAATTTA
16171202 GGGGTAAAATAGGTAATTTT
1 GGGGTAAAAT-GGTAATTTT
16171222 TGGAAGTTTT
Statistics
Matches: 167, Mismatches: 23, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
58 87 0.52
59 80 0.48
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (57 bp):
GGGGTAAAATGGTAATTTTGGTGAAATCGGGTTAAAAATAGAATTTTGGAAAATTTA
Found at i:16171123 original size:30 final size:28
Alignment explanation
Indices: 16170973--16171193 Score: 112
Period size: 29 Copynumber: 7.5 Consensus size: 28
16170963 CTTACGGGGC
*
16170973 AAAATGGTAATTTTTGGTGAAATCG-GTGTCG
1 AAAATGG-AA-TTTTGGTGAAATCGAG-GT-T
* * ** *
16171004 AAAATAGAATTTTGG-AAAATTTAGGGGT
1 AAAATGGAATTTTGGTGAAATCGA-GGTT
*
16171032 AAAATGGCAATTTTGGTGAAATCGGGGTT
1 AAAATGG-AATTTTGGTGAAATCGAGGTT
* * *
16171061 AAAAATAGAATTTT-G-GAAAGTTCAAGGGT
1 -AAAATGGAATTTTGGTGAAA--TCGAGGTT
*
16171090 AAAATGGTCATTTTTGGTGAAATCGAGGTT
1 AAAATGG--AATTTTGGTGAAATCGAGGTT
** *
16171120 AAAACTGGAATTTTGG-GAAATTTAGGGGT
1 AAAA-TGGAATTTTGGTGAAATCGA-GGTT
* *
16171149 AAAATTGTAATTTTTGGTGAAATTG-GGTT
1 AAAA-TGGAA-TTTTGGTGAAATCGAGGTT
16171178 AAAAATGGAATTTTGG
1 -AAAATGGAATTTTGG
16171194 AAAGTTTGGG
Statistics
Matches: 145, Mismatches: 29, Indels: 35
0.69 0.14 0.17
Matches are distributed among these distances:
27 4 0.03
28 29 0.20
29 54 0.37
30 38 0.26
31 16 0.11
32 4 0.03
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (28 bp):
AAAATGGAATTTTGGTGAAATCGAGGTT
Found at i:16171209 original size:29 final size:29
Alignment explanation
Indices: 16171004--16171250 Score: 136
Period size: 29 Copynumber: 8.4 Consensus size: 29
16170994 ATCGGTGTCG
* *
16171004 AAAATAGAATTTTGGAAAATTTAGGGGT-
1 AAAATGGAATTTTGGGAAATTTAGGGGTA
*
16171032 AAAATGGCAATTTTGGTGAAA--TCGGGGTTA
1 AAAATGG-AATTTTGG-GAAATTTAGGGG-TA
* * *
16171062 AAAATAGAATTTT-GGAAAGTTCAAGGGT-
1 AAAATGGAATTTTGGGAAA-TTTAGGGGTA
* ** *
16171090 AAAATGGTCATTTTTGGTGAAATCGA-GGTTA
1 AAAATGG--AATTTTGG-GAAATTTAGGGGTA
*
16171121 AAACTGGAATTTTGGGAAATTTAGGGGTA
1 AAAATGGAATTTTGGGAAATTTAGGGGTA
* * *
16171150 AAATTGTAATTTTTGGTGAAA-TT-GGGTTA
1 AAAATGGAA-TTTTGG-GAAATTTAGGGGTA
*
16171179 AAAATGGAATTTT-GGAAAGTTTGGGGGT-
1 AAAATGGAATTTTGGGAAA-TTTAGGGGTA
* * * *
16171207 AAAATAGGTAATTTTTGGAAGTTTTGGGGTT
1 AAAAT-GG-AATTTTGGGAAATTTAGGGGTA
*
16171238 AAAATGTAATTTT
1 AAAATGGAATTTT
16171251 CTAAAATTTT
Statistics
Matches: 171, Mismatches: 26, Indels: 43
0.71 0.11 0.18
Matches are distributed among these distances:
26 4 0.02
27 5 0.03
28 35 0.20
29 58 0.34
30 43 0.25
31 22 0.13
32 4 0.02
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.35
Consensus pattern (29 bp):
AAAATGGAATTTTGGGAAATTTAGGGGTA
Found at i:16171229 original size:30 final size:30
Alignment explanation
Indices: 16171179--16171283 Score: 87
Period size: 29 Copynumber: 3.6 Consensus size: 30
16171169 AATTGGGTTA
*
16171179 AAAATGGAA-TTTTGGAAAG-TTTGGGGGT
1 AAAATGTAATTTTTGGAAAGTTTTGGGGGT
*
16171207 AAAATAGGTAATTTTTGG-AAGTTTTGGGGTT
1 AAAAT--GTAATTTTTGGAAAGTTTTGGGGGT
* *
16171238 AAAATGTAATTTTCT--AAAATTTT-AGGGT
1 AAAATGTAATTTT-TGGAAAGTTTTGGGGGT
*
16171266 CAAAATGCAATTTTTGGA
1 -AAAATGTAATTTTTGGA
16171284 CTATTTGGGG
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
28 9 0.15
29 26 0.42
30 8 0.13
31 19 0.31
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (30 bp):
AAAATGTAATTTTTGGAAAGTTTTGGGGGT
Found at i:16171243 original size:59 final size:59
Alignment explanation
Indices: 16170968--16171224 Score: 331
Period size: 59 Copynumber: 4.4 Consensus size: 59
16170958 TTGGACTTAC
* * ** * *
16170968 GGGGCAAAATGGTAATTTTTGGTGAAATCGGTGTCGAAAATAGAATTTTGGAAAATTTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
* * *
16171027 GGGGTAAAATGGCAA-TTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
* * * *
16171085 AGGGTAAAATGGTCATTTTTGGTGAAATCGAGGTTAAAACTGGAATTTTGGGAAA-TTTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTT-GGAAAGTTTA
* * *
16171144 GGGGTAAAATTGTAATTTTTGGTGAAAT-TGGGTTAAAAATGGAATTTTGGAAAGTTTG
1 GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
16171202 GGGGTAAAATAGGTAATTTTTGG
1 GGGGTAAAAT-GGTAATTTTTGG
16171225 AAGTTTTGGG
Statistics
Matches: 172, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
57 5 0.03
58 80 0.47
59 82 0.48
60 5 0.03
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.33
Consensus pattern (59 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTTA
Found at i:16171250 original size:117 final size:117
Alignment explanation
Indices: 16170973--16171224 Score: 348
Period size: 117 Copynumber: 2.1 Consensus size: 117
16170963 CTTACGGGGC
* *
16170973 AAAATGGTAATTTTTGGTGAAATCG-GTGTCGAAAA-TAGAATTTTGGAAAATTTAGGGGTAAAA
1 AAAATGGTAATTTTTGGTGAAATCGAG-GT-TAAAACTGGAATTTTGGAAAATTTAGGGGTAAAA
16171036 TGGCAATTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCAAGGGT
64 TGGCAATTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCAAGGGT
* * *
16171090 AAAATGGTCATTTTTGGTGAAATCGAGGTTAAAACTGGAATTTTGGGAAATTTAGGGGTAAAATT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAACTGGAATTTTGGAAAATTTAGGGGTAAAATG
* * * ***
16171155 GTAATTTTTGGTGAAAT-TGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGT
66 GCAA-TTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCAAGGGT
16171207 AAAATAGGTAATTTTTGG
1 AAAAT-GGTAATTTTTGG
16171225 AAGTTTTGGG
Statistics
Matches: 119, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
116 4 0.03
117 91 0.76
118 24 0.20
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (117 bp):
AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAACTGGAATTTTGGAAAATTTAGGGGTAAAATG
GCAATTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCAAGGGT
Found at i:16171258 original size:117 final size:118
Alignment explanation
Indices: 16170973--16171282 Score: 332
Period size: 117 Copynumber: 2.6 Consensus size: 118
16170963 CTTACGGGGC
* * *
16170973 AAAATGGTAATTTTTGGTGAAATCG-GTGTCGAAAA-TAGAATTTTGGAAAATTTAGGGGTAAAA
1 AAAATGGTAATTTTTGGTGAAATCGAG-GT-TAAAACTGGAATTTTCGAAAATTTAGGGGTAAAA
*
16171036 TGGCAA-TTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCAAGGGT
64 TTGCAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCAAGGGT
* * *
16171090 AAAATGGTCATTTTTGGTGAAATCGAGGTTAAAACTGGAATTTTGGGAAATTTAGGGGTAAAATT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAACTGGAATTTTCGAAAATTTAGGGGTAAAATT
* * * ***
16171155 GTAATTTTTGGTGAAAT-TGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGT
66 GCAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCAAGGGT
* * * * *
16171207 AAAATAGGTAATTTTT-G-GAAGTTTTGGGGTTAAAA-TGTAATTTTCTAAAATTTTA-GGGTCA
1 AAAAT-GGTAATTTTTGGTGAA--ATCGAGGTTAAAACTGGAATTTTCGAAAA-TTTAGGGGT-A
16171268 AAA-TGCAATTTTTGG
61 AAATTGCAATTTTTGG
16171283 ACTATTTGGG
Statistics
Matches: 165, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
116 7 0.04
117 118 0.72
118 40 0.24
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (118 bp):
AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAACTGGAATTTTCGAAAATTTAGGGGTAAAATT
GCAATTTTTGGTGAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCAAGGGT
Found at i:16172200 original size:38 final size:39
Alignment explanation
Indices: 16172141--16172223 Score: 159
Period size: 38 Copynumber: 2.2 Consensus size: 39
16172131 TTAATCCTTA
16172141 AAATCCCTTTTTTTTAAAAAAAATAAACCCAATATTTAT
1 AAATCCCTTTTTTTTAAAAAAAATAAACCCAATATTTAT
16172180 AAATCCCTTTTTTTT-AAAAAAATAAACCCAATATTTAT
1 AAATCCCTTTTTTTTAAAAAAAATAAACCCAATATTTAT
16172218 AAATCC
1 AAATCC
16172224 ATAAAAAATG
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 29 0.66
39 15 0.34
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (39 bp):
AAATCCCTTTTTTTTAAAAAAAATAAACCCAATATTTAT
Done.