Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 45 of 182
Found at i:16172319 original size:6 final size:6
Alignment explanation
Indices: 16172308--16172335 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
16172298 GCTTCAGCGA
16172308 CGGCTC CGGCTC CGGCTC CGGCTC CGGC
1 CGGCTC CGGCTC CGGCTC CGGCTC CGGC
16172336 GTAAGCTGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.36, T:0.14
Consensus pattern (6 bp):
CGGCTC
Found at i:16172429 original size:13 final size:13
Alignment explanation
Indices: 16172404--16172483 Score: 61
Period size: 13 Copynumber: 6.1 Consensus size: 13
16172394 TTCTTTTGCT
*
16172404 TATTTATTTATTAT
1 TATTTA-TTATTAA
16172418 TATTTATTATTAA
1 TATTTATTATTAA
** *
16172431 TGGTCATTATTAA
1 TATTTATTATTAA
* * *
16172444 TAATTATTAATAC
1 TATTTATTATTAA
* * *
16172457 CATTCATTATTAG
1 TATTTATTATTAA
16172470 TATTTATTATTAA
1 TATTTATTATTAA
16172483 T
1 T
16172484 GCTATTAAAA
Statistics
Matches: 49, Mismatches: 17, Indels: 1
0.73 0.25 0.01
Matches are distributed among these distances:
13 43 0.88
14 6 0.12
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (13 bp):
TATTTATTATTAA
Found at i:16172450 original size:26 final size:25
Alignment explanation
Indices: 16172411--16172484 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 25
16172401 GCTTATTTAT
*
16172411 TTATTATTATTTATTATTAATGGTCA
1 TTATTAATATTTATTATTAAT-GTCA
* *
16172437 TTATTAATAATTATTAATACCAT-TCA
1 TTATTAATATTTATTATTA--ATGTCA
*
16172463 TTATTAGTATTTATTATTAATG
1 TTATTAATATTTATTATTAATG
16172485 CTATTAAAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
24 2 0.05
26 35 0.90
28 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (25 bp):
TTATTAATATTTATTATTAATGTCA
Found at i:16172820 original size:27 final size:27
Alignment explanation
Indices: 16172782--16172879 Score: 160
Period size: 27 Copynumber: 3.6 Consensus size: 27
16172772 GGTTTTTTTT
16172782 AGAACAGGGTTTGTAACTGTGTATTCA
1 AGAACAGGGTTTGTAACTGTGTATTCA
* *
16172809 AGAACAGGGTTTGTAATTGTGTTTTCA
1 AGAACAGGGTTTGTAACTGTGTATTCA
* *
16172836 AGAACATGGTTTGTAACCGTGTATTCA
1 AGAACAGGGTTTGTAACTGTGTATTCA
16172863 AGAACAGGGTTTGTAAC
1 AGAACAGGGTTTGTAAC
16172880 CCCTTTACAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (27 bp):
AGAACAGGGTTTGTAACTGTGTATTCA
Found at i:16174880 original size:379 final size:381
Alignment explanation
Indices: 16174177--16174910 Score: 872
Period size: 379 Copynumber: 1.9 Consensus size: 381
16174167 CTTGACACAA
* * ** *
16174177 AAGAAGATCAATGAAAACAATTTATATTAAAAGTGAGGATGAAAATAGGGAGCGAAGCCTTTTAG
1 AAGAAGATCAAAGAAAACAATTTATATTAAAAGTGAGGATGAAAACAAAGAGCGAAGCCTTTAAG
* * * *
16174242 GGAAAAAGACATGATAGTATAAGTATCCCTAAACCCTTTTTATGTTTTGTTCCCCTGCCCCTTCA
66 GGAAAAAGACATGATAGTATAAGCATCCCCAAACCCTTTCTATGTTTTGTTCCCC-GACCCTTCA
* * ** * * *
16174307 TTCATTCGACGCTTATTTGAAACTTGAATTGTGGTGAAATTTGACAATTCAAGACAGGTGATAAA
130 TTCACTCGACGCGTATAGGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATAAA
* * * * * * **
16174372 TAATGTTAAAAAATAAAAGAGAAACACATTTTTTTTACGATATTTAAGCGAACAATCCAATGAAA
195 CAACGTTAAAAAATAAAACAAAAACACATGTTTTTGAAAATATTTAAGCGAACAATCCAATGAAA
*
16174437 GATTAGAGTCATAATTACAATAGAAACAACAGACAAATATGCTACGAAGAAGGTATCTTGGTTGG
260 GATTAGAGTCATAATTACAATAGAAACAACAGACAAATATGCTACGAAGAAGGTATCATGGTTGG
* * ** *
16174502 CCTCTGACCAATTGGATTCTCTGCTTTTTCAGACGTGACACAAAATACTTGAAACTG
325 CCTCTAACAAATTGGAAACTCTGCATTTTCAGACGTGACACAAAATACTTGAAACTG
* *
16174559 AAGAAGATCAAAGAAAATAGTTTATA-TAATAAGTGAGGATGAAAACAAAGAGCGAAGCCTTTAA
1 AAGAAGATCAAAGAAAACAATTTATATTAA-AAGTGAGGATGAAAACAAAGAGCGAAGCCTTTAA
* * * *
16174623 GGGAAATAGACATGATTGTATAAGCA-CCCCAAACCCTTTCTATG-TTT-TTCTTCC-ACCCTTT
65 GGGAAAAAGACATGATAGTATAAGCATCCCCAAACCCTTTCTATGTTTTGTTC-CCCGACCCTTC
** * *
16174684 ATTCACTCGGTGCGTATAGGAATCTTGAATTGTGGTGAAAGTTT-ACAAATGCAAAACAAGTGGT
129 ATTCACTCGACGCGTATAGGAAACTTGAATTGTGGTGAAA-TTTGAC-AATGCAAAACAAGTGAT
* * * **
16174748 ATACAACGTTCAAAAATAAAACAAAAACTA-ATGTTTTTGAAAATATTTAAGTGAACTTTCCAAT
192 AAACAACGTTAAAAAATAAAACAAAAAC-ACATGTTTTTGAAAATATTTAAGCGAACAATCCAAT
* * * * * * *
16174812 GAAATATTAGAGTCATTATTACAATGGAAACAACAGATAAATATGGC-AGGGAGCAGGTATCATG
256 GAAAGATTAGAGTCATAATTACAATAGAAACAACAGACAAATAT-GCTACGAAGAAGGTATCATG
*
16174876 GTTGGCCTTTAACAAATTGGAAACTCTGCATTTTC
320 GTTGGCCTCTAACAAATTGGAAACTCTGCATTTTC
16174911 GGACTCTTTA
Statistics
Matches: 293, Mismatches: 53, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
378 40 0.14
379 150 0.51
380 8 0.03
381 19 0.06
382 76 0.26
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (381 bp):
AAGAAGATCAAAGAAAACAATTTATATTAAAAGTGAGGATGAAAACAAAGAGCGAAGCCTTTAAG
GGAAAAAGACATGATAGTATAAGCATCCCCAAACCCTTTCTATGTTTTGTTCCCCGACCCTTCAT
TCACTCGACGCGTATAGGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATAAAC
AACGTTAAAAAATAAAACAAAAACACATGTTTTTGAAAATATTTAAGCGAACAATCCAATGAAAG
ATTAGAGTCATAATTACAATAGAAACAACAGACAAATATGCTACGAAGAAGGTATCATGGTTGGC
CTCTAACAAATTGGAAACTCTGCATTTTCAGACGTGACACAAAATACTTGAAACTG
Found at i:16176717 original size:377 final size:375
Alignment explanation
Indices: 16175791--16176862 Score: 1250
Period size: 375 Copynumber: 2.8 Consensus size: 375
16175781 AAGAACATAA
* * * * ** * **
16175791 ACTTAACATAAAAGAATATCAAATAAAAGGGTTTATATCAAAAGTGAGAATGAAAACAGGGAGTG
1 ACTTAAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAGGTTGAAAACAGGGAGTG
* * * * * *
16175856 AAGCCTTTAAGGGAAATATACACGATTGTATAAGCACTCCAAACTCATTTTATGTTTCGTTTCCC
66 AAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACCCCAAAATCTTTTTATGTTT-TTTTCCC
16175921 CTCTTTTTTCACTCGGTGCGT-AT-CTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACA
130 CTCTTTTTTCACTC--TGC-TCATACTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACA
*
16175984 AGTGATAAATAATGTATAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGCGAACTTT
192 AGTGATAAATAATTTA-AAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGCGAACTTT
* * ** *
16176049 CCGTTG---TATTTGAGTCATAATTAAAATGGAAACAAC-GAACAAATATGGTACAAAACAGTTA
256 CCGTTGAAAGATTAGAGTCATAATTAAAATGGAAACAACAG-ACAAATATGGTAGGAAACAGGTA
* * *
16176110 TCTTGGTTGGCCTCTAACCAATTGAATATTCTACATTTTTAGACATTACACAAAAT
320 TCTTGGTTGCCCTCTAACCAATTGAAGATTCTACATTTTCAGACATTACACAAAAT
* * * * **
16176166 ACTTAAAACAAAAGAAGATCAATGAAAACAATTTATATCGAAAGTGAAGTTGAAAATAGGGAGCC
1 ACTTAAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAGGTTGAAAACAGGGAGTG
* *
16176231 AAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCCTC-AAA-CTCTTTATGTTTTGTTTCC
66 AAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACCC-CAAAATCTTTTTATGTTTT-TTTCC
* * * * *
16176294 CCTCTTTTTTTCACTCGGCACGTATTTGAAAGTTGAATTGTGGTGAAATTTGACAATGCAAAACA
129 CCTC-TTTTTTCACTCTGCTCATA-CTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACA
* * *
16176359 AATGATAAATTAATTTAAAAAATAAAAGAGAAACACATGTTTTTGGTGATATTCAAGCGAACTTT
192 AGTGATAAA-TAATTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGCGAACTTT
* * * * **
16176424 CCGTTGAAAGATTAGAGACATAATTACAATGGAAACAACAGACTAATATGTTAGGAAGTAGGTAT
256 CCGTTGAAAGATTAGAGTCATAATTAAAATGGAAACAACAGACAAATATGGTAGGAAACAGGTAT
16176489 CTTGGTTGCCCTCTAACCAATTTG-AGATTCTACATTTTCAGAC-TTACACAAAAT
321 CTTGGTTGCCCTCTAACCAA-TTGAAGATTCTACATTTTCAGACATTACACAAAAT
* * * * *
16176543 CCTTGAAACAAAAGATGATCAAAGAAAATAGTTTATATCGAAAGAGAGGTTGAAAACAGGGAGTG
1 ACTTAAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAGGTTGAAAACAGGGAGTG
* * *
16176608 AATCCTTTAAGAGAAATAGACATGATTGTATAAACACCCCAACAATCTTTTTATGTTTTTTTCCA
66 AAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACCCCAA-AATCTTTTTATGTTTTTTTCC-
* * * *
16176673 CC-CTTTTTTCACTCTGCTCATACAGGAAACTTGAATTATGGTGAAAGTTGACAACGCAAAACAA
129 CCTCTTTTTTCACTCTGCTCATAC-TGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAA
* * * * * *
16176737 GTGACAAAT-ATGTTAAAAAATAAAAGAAAAAAAACTAATGTTTTTGAAGATGTTTAAGCGAAAT
193 GTGATAAATAAT-TTAAAAAATAAAAG-AGAAACAC--ATGTTTTTGGAGATATTTAAGCGAACT
* ** * * * *
16176801 TTTCAATGAAAGATTAGAGTGATAAGTAAAATGGAAACAATAGACAAATAAGGTAGGAAACA
254 TTCCGTTGAAAGATTAGAGTCATAATTAAAATGGAAACAACAGACAAATATGGTAGGAAACA
16176863 TATATCATGG
Statistics
Matches: 583, Mismatches: 93, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
373 3 0.01
374 19 0.03
375 198 0.34
376 23 0.04
377 164 0.28
378 87 0.15
379 89 0.15
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (375 bp):
ACTTAAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAGGTTGAAAACAGGGAGTG
AAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACCCCAAAATCTTTTTATGTTTTTTTCCCC
TCTTTTTTCACTCTGCTCATACTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTG
ATAAATAATTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGCGAACTTTCCGTT
GAAAGATTAGAGTCATAATTAAAATGGAAACAACAGACAAATATGGTAGGAAACAGGTATCTTGG
TTGCCCTCTAACCAATTGAAGATTCTACATTTTCAGACATTACACAAAAT
Found at i:16178782 original size:14 final size:14
Alignment explanation
Indices: 16178763--16178791 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16178753 AGGGACTTAA
16178763 ACTTGACACAAAAG
1 ACTTGACACAAAAG
16178777 ACTTGACACAAAAG
1 ACTTGACACAAAAG
16178791 A
1 A
16178792 AGATCAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.14
Consensus pattern (14 bp):
ACTTGACACAAAAG
Found at i:16180839 original size:377 final size:378
Alignment explanation
Indices: 16180128--16180859 Score: 823
Period size: 377 Copynumber: 1.9 Consensus size: 378
16180118 AACTTGACAC
* * * * *
16180128 AAAAGAAGATGAAAGAAAAGGGTTTATATCAAAAGTGAGGATGAAAAGAAGGAATGAAGCCTTTA
1 AAAAGAAGATCAAAGAAAAGAGTTTATATAAAAAGTGAGGATGAAAACAAGGAACGAAGCCTTTA
* * * ** * **
16180193 CGGGAAATAAACACGTTTGTATAAGTATCCTTAAACTTTTTTTATGTTTTGTTTCTCCCCTTTAT
66 AGGGAAATAAACACGATTGTATAAGCATCCCCAAACTCTTTCCATGTTTTGTTTCTCCCCTTTAT
** *
16180258 TCACTCGACGCGTATTTGAAACTTGAATTGTGGTAAAATTTGACAATGCAAAACAAGTGATAAGG
131 TCACTCGACGCGTATAGGAAACTTGAATTGTGGTAAAAGTTGACAATGCAAAACAAGTGATAAGG
* * **
16180323 AATGTTAAAAAATAAAAGAGAAACACAAGGATTTTGTGATATTCAAGCGAACATTCAAATGAAAG
196 AATGTCAAAAAATAAAAGAGAAAAACAAGGATTTTGAAATATTCAAGCGAACATTCAAATGAAAG
* * * * * * *
16180388 ATTTGAGTAGTAATTACAGTGGAAACAACTGACAAATATGGTAGAAAGCAGTTATCTTGGTTGGC
261 ATTAGAGTAGTAATTACAATGAAAACAACAGACAAATATGGCAGAAAGCAGGTATCATGGTTGGC
*
16180453 CTCTAACCAATTGGATTCTCTGCATTTTCAAACGTGACACAAAAAACTAGGAA
326 CTCTAACCAATTGGATACTCTGCATTTTCAAACGTGACACAAAAAACTAGGAA
* * * * * *
16180506 AAAAGGAGATCAAAGAAAATAGTTTATATAAAAAGTGAGGATTAGAACAGGGAGCGAAGCCTTTA
1 AAAAGAAGATCAAAGAAAAGAGTTTATATAAAAAGTGAGGATGAAAACAAGGAACGAAGCCTTTA
* * *
16180571 AGGGAAATAGACATGATTGTATAAGCA-CCCCAAACTCTTTCCATGTTTT-TCTTC-CTGCCTTT
66 AGGGAAATAAACACGATTGTATAAGCATCCCCAAACTCTTTCCATGTTTTGT-TTCTC-CCCTTT
* * * *
16180633 ATTCACTC-AGTGCGTATAGGAATCTTGAATTGTGGTGAAAGTTGACAATGCAAAACAAGTGGTA
129 ATTCACTCGA-CGCGTATAGGAAACTTGAATTGTGGTAAAAGTTGACAATGCAAAACAAGTGATA
* * * * * * ** ** *
16180697 TA-TAATGTCCAAAAA-AAAATA-AAAAAGTAATGTTTTTGAAAATATTTGAGCGAATTTTCCAA
193 -AGGAATGTCAAAAAATAAAAGAGAAAAA-CAAGGATTTTG-AAATATTCAAGCGAACATTCAAA
* ** * *
16180759 TGAAAGATTAGAGTCA-TTATTACAATGAAAACAACAGACAAATATGGCAGGGAGTAGGTGTCAT
255 TGAAAGATTAGAGT-AGTAATTACAATGAAAACAACAGACAAATATGGCAGAAAGCAGGTATCAT
*
16180823 GGTTGGCCTTTAACCAATTGGATACTCTGCATTTTCA
319 GGTTGGCCTCTAACCAATTGGATACTCTGCATTTTCA
16180860 GACACTTTTA
Statistics
Matches: 289, Mismatches: 58, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
375 4 0.01
376 16 0.06
377 191 0.66
378 78 0.27
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.29
Consensus pattern (378 bp):
AAAAGAAGATCAAAGAAAAGAGTTTATATAAAAAGTGAGGATGAAAACAAGGAACGAAGCCTTTA
AGGGAAATAAACACGATTGTATAAGCATCCCCAAACTCTTTCCATGTTTTGTTTCTCCCCTTTAT
TCACTCGACGCGTATAGGAAACTTGAATTGTGGTAAAAGTTGACAATGCAAAACAAGTGATAAGG
AATGTCAAAAAATAAAAGAGAAAAACAAGGATTTTGAAATATTCAAGCGAACATTCAAATGAAAG
ATTAGAGTAGTAATTACAATGAAAACAACAGACAAATATGGCAGAAAGCAGGTATCATGGTTGGC
CTCTAACCAATTGGATACTCTGCATTTTCAAACGTGACACAAAAAACTAGGAA
Found at i:16183691 original size:379 final size:375
Alignment explanation
Indices: 16182851--16183955 Score: 1311
Period size: 379 Copynumber: 2.9 Consensus size: 375
16182841 AAGAACTTAA
* * * * * * ** **
16182851 ACTTGACACAAAAGAAGATCAAAG-AAAAA--GGTTATCAAAAGTGAGGATGAAAGCACAGAGTG
1 ACTTGAAACAAAAGAAGATCAAAGAAAAAATTTGATATCGAAAGTGAAGTTGAAAATAGGGAGTG
* * * *
16182913 AAGCCTTTAAGGGAAATATACACGATTGTATAAGCACCCCAAACTAGTTTTATGTTTCGTTTCCC
66 AAGCCTTTAA-GGAAATAGACATGATTGTATAAGCACCCCAAACTATTTTTATGTTTTGTTTCCC
* *
16182978 CTCTTTTTTCACTCGGTGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAG
130 CCCTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAG
* * *
16183043 TGATAAATAAGATTTAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGCGAACTTTTC
195 TGATAAATAA-TTTTAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTAAAGCAAACTTTTC
* * *
16183108 GTTGAAAGATT--AGTCATAATTACAATGGAAACAACAGACAAATAAGGTATGAACTAGTTATCT
259 ATTGAAAGATTAGAGT-ATAATTACAATGGAAACAACAGACAAATATGGTAGGAACTAG-TATCT
* * * *
16183171 TGGTTGGCCACTAACCAATTAGATA-TTCTGCATTTTCAAACATGACACAGAAT
322 TGGTTGGCCTCTAACAAATTGGATACTTCTGCATTTTCAAACATGACACAAAAT
* * *
16183224 ACTTGAAACAAAAGAAGATCAAAGAAAACATTTGATATCGAAAGTGAAGTTGAAACTAGGGAGCG
1 ACTTGAAACAAAAGAAGATCAAAGAAAAAATTTGATATCGAAAGTGAAGTTGAAAATAGGGAGTG
* * *
16183289 AAGGCTTTTATGGAAATAGACATGATTGTAT-AGCCACCCCGAAATTATTTTTATGTTTTGTTTC
66 AA-GCCTTTAAGGAAATAGACATGATTGTATAAG-CACCCC-AAACTATTTTTATGTTTTGTTTC
* * * *
16183353 CCCCCTTTTTTCACTCGGCGCATATCCGAAAGTTGAATTGTGGTGAAATTTGATAATGCAAAACA
128 CCCCCTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACA
* *
16183418 AGTGATAAATAATTTTCAAAAATAAAA-ATGCAACACATGTTTTTGGTGATATTAAAGCAAACTT
193 AGTGATAAATAATTTT-AAAAATAAAAGA-GAAACACATGTTTTTGGAGATATTAAAGCAAACTT
* * *
16183482 TCCATTGAAAGATTAGAGTATTAATTACAGTGGAAACAACAGACAAATATGCTAGGAAGCTAGTA
256 TTCATTGAAAGATTAGAGTA-TAATTACAATGGAAACAACAGACAAATATGGTAGGAA-CTAGTA
* * *
16183547 TCTTGGTTGGCCTCAAACAAATTGGATACTT-TGCATTTTCAGACTTGACACAAAAT
319 TCTTGGTTGGCCTCTAACAAATTGGATACTTCTGCATTTTCAAACATGACACAAAAT
* * * * *
16183603 ACTTGAAACAAAAGATGATCAAAGAAAAAAGTTT-ATATCGAAAGTGAGGTTTAAAATTGGTAGT
1 ACTTGAAACAAAAGAAGATCAAAGAAAAAA-TTTGATATCGAAAGTGAAGTTGAAAATAGGGAGT
* *
16183667 GAATCCTTTAAGAGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTTTATGTTTTGTTTC
65 GAAGCCTTTAAG-GAAATAGACATGATTGTATAAGCA-CCCCAAACTATTTTTATGTTTTGTTTC
* * * * *
16183732 CCCCCTTTTTTCACTCGGCTCGTATATGAAACATGAATTGTGGTGAAAGTTGACAACGCAAAACA
128 CCCCCTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACA
* * * * *
16183797 AGTGGTATATAATGTTAAATAATAAAAGA-AAAAACTAATGTTTTTGAAGATATTTAAGAG-AAA
193 AGTGATAAATAATTTTAAA-AATAAAAGAGAAACAC--ATGTTTTTGGAGATA-TTAA-AGCAAA
* *
16183860 -TTTTCAATGAAAGATTAGAGTAATAATTACAATGGAAACAATAGACAAATATGGTAGGAAAC-A
253 CTTTTCATTGAAAGATTAGAGT-ATAATTACAATGGAAACAACAGACAAATATGGTAGG-AACTA
* ** *
16183923 TGTATCATGGTTCACCTCTAAGAAATTGGATAC
316 -GTATCTTGGTTGGCCTCTAACAAATTGGATAC
16183956 ACTCTATTTT
Statistics
Matches: 624, Mismatches: 82, Indels: 45
0.83 0.11 0.06
Matches are distributed among these distances:
373 23 0.04
374 4 0.01
375 2 0.00
376 53 0.08
377 150 0.24
378 14 0.02
379 258 0.41
380 108 0.17
381 10 0.02
382 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (375 bp):
ACTTGAAACAAAAGAAGATCAAAGAAAAAATTTGATATCGAAAGTGAAGTTGAAAATAGGGAGTG
AAGCCTTTAAGGAAATAGACATGATTGTATAAGCACCCCAAACTATTTTTATGTTTTGTTTCCCC
CCTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGT
GATAAATAATTTTAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTAAAGCAAACTTTTCAT
TGAAAGATTAGAGTATAATTACAATGGAAACAACAGACAAATATGGTAGGAACTAGTATCTTGGT
TGGCCTCTAACAAATTGGATACTTCTGCATTTTCAAACATGACACAAAAT
Found at i:16185794 original size:14 final size:14
Alignment explanation
Indices: 16185775--16185803 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16185765 ATGAAGTTAA
16185775 ACTTGACACAAAAG
1 ACTTGACACAAAAG
16185789 ACTTGACACAAAAG
1 ACTTGACACAAAAG
16185803 A
1 A
16185804 AGATCAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.14
Consensus pattern (14 bp):
ACTTGACACAAAAG
Found at i:16187247 original size:381 final size:382
Alignment explanation
Indices: 16185778--16187617 Score: 2154
Period size: 381 Copynumber: 4.9 Consensus size: 382
16185768 AAGTTAAACT
* * *** * * * * *
16185778 TGACACAAAAGACTTGACACAAAAGAAGATCAAAGAGAAGGGGTTTGTATCGAAGGTGAGGATGA
1 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGA-AAACAGTTTATATCAAAAGTGAAGTTGA
* * * * * * * * *
16185843 AAATAGGAAGTGAAGCCTTTAAGGGAAATATAGACGATTATATTAGCA-CCCCAAACTCGTTTTA
65 AAATAGGGAGCGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTTTA
* * * * * * *
16185907 TGTTTCATTTCCCCTCTTTTTTCACTTGGTGC-ATATCTGAAACTTGAATTGTGGTGAAATCTGA
130 TGTTTTATTTCCCCCCTTTTTTCACTCGGCGCGCTATCTGAAAGTTGAATTGTGGTGAAATTTGA
** * * * * *
16185971 CAATGTTAAAGAAGTGGTAAAT-AATGTTTAAAAATA-AAACAGAAACACGTGTTTTTGGAGATA
195 CAATGCAAAACAAGTGATAAATAAATGTTCAAAAATATAAAGAGAAACACATGTTTTTGGAGATA
* ** *
16186034 TTTAAGCGAACTTTCCGTTAAAAGATTAGAGTTTTAATTACAATGGAAACAACAGAAAAATATGG
260 TTTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGG
* * *
16186099 TACGAAATAGTTACCTTGGTCGGCCTTTAACCAATTGGATATTCTT-CATTTTCAGACA
325 TACGAAATAGTTATCTTGGTTGGCCTCTAACCAATTGGATATT-TTGCATTTTCAGACA
* * * * * * * *
16186157 TGACAC-AAATACTAGAAACGAAAGAAGATAAAAGAAAACAATTCATATAAAAATTAAAGTTGAA
1 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAAGTTGAA
* * * * *
16186221 AATAGGGAGCGAAGCCTTTTAAGGAAACAGGCATGATTGTATAAGCACCCCTAAACTCTTTTCAT
66 AATAGGGAGCGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTTTAT
16186286 GTTTTATTTCCCCCCTTTTTTCACTCGGCGCG-TATCTGAAAGTTGAATTGTGGTGAAATTTGAC
131 GTTTTATTTCCCCCCTTTTTTCACTCGGCGCGCTATCTGAAAGTTGAATTGTGGTGAAATTTGAC
* * *
16186350 AATGCAAAATAAATGATAAAT-AATGTTTAAAAATAT-AAGAGAAACACATGTTTTTGGAGATAT
196 AATGCAAAACAAGTGATAAATAAATGTTCAAAAATATAAAGAGAAACACATGTTTTTGGAGATAT
*
16186413 TTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATAGAAACAACAGACAAATATGGT
261 TTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGT
* * * *
16186478 ATG-AA-A-TTATCTTGGTTGGCGTCTAACCAATTGGATATTCTACATTTTCAGACA
326 ACGAAATAGTTATCTTGGTTGGCCTCTAACCAATTGGATATTTTGCATTTTCAGACA
** *
16186532 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCCTAAGTGATGTTGAA
1 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAAGTTGAA
16186597 AATAGGGAGCGAAGCCTTTTAGGGAAATAG--A--ATTGTATAAGCACCCCCAAACTCTTTTTAT
66 AATAGGGAGCGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTTTAT
** * * *
16186658 GTTTTATTTCCCCCCTTTTTTCACTCCACACG-TATCTGAAAGTCGAATTGTGGTGAAATTTGAT
131 GTTTTATTTCCCCCCTTTTTTCACTCGGCGCGCTATCTGAAAGTTGAATTGTGGTGAAATTTGAC
* *
16186722 AATGCAAAACAAGTGATAAATAAAT-TCCAAAAATA-AAAGAGAAACACATGTTTTTGGTA-TTA
196 AATGCAAAACAAGTGATAAATAAATGTTCAAAAATATAAAGAGAAACACATGTTTTTGG-AGATA
*
16186784 TTTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGG
260 TTTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGG
* *
16186849 TACGAAATATTTATCTTGGTTGGTCTCTAACCAATTGGATATTTTGCATTTTCAGACA
325 TACGAAATAGTTATCTTGGTTGGCCTCTAACCAATTGGATATTTTGCATTTTCAGACA
*
16186907 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAG-TTATATCAAAAGTGAAGCTGAA
1 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAAGTTGAA
* * * * *
16186971 AATAGGGAGTGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCAACACTAAACACTTTTTAT
66 AATAGGGAGCGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTTTAT
* * * *
16187036 GTTTTGTTTCCCCACTTTTTTCACTCGGCGCGCATATCTAAAAGTTGAATTGTGGTGAAATTTTA
131 GTTTTATTTCCCCCCTTTTTTCACTCGGCGCGC-TATCTGAAAGTTGAATTGTGGTGAAATTTGA
* *
16187101 CAATGCAAAACAAGTGATAAATAAAT-TTCAAAAAAATAAAGAGAAACACATGTTTTTAGTA-AT
195 CAATGCAAAACAAGTGATAAATAAATGTTCAAAAATATAAAGAGAAACACATGTTTTT-GGAGAT
* *
16187164 ATTTAAGCGTACTTTCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATG
259 ATTTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATG
* * ** * * * * *
16187229 CTAGGAAGCAGGTATCTTGGTTGGCCTCTAACCAATTGGATAATTTGTATTATCAGACT
324 GTACGAAATAGTTATCTTGGTTGGCCTCTAACCAATTGGATATTTTGCATTTTCAGACA
* * * ** * * * *
16187288 TGACACAAAATACTTGGAATAATAGTTGATCAAAGCAAATAGTTTATATCGAAAGTGAGGTTGAA
1 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAAGTTGAA
* * ** * * * *
16187353 AAAAGGGAGCG-AGCCTTTAAAAGAAATAGACATGATTGTATAAACACCTCAAAACCCTTTTTAT
66 AATAGGGAGCGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTTTAT
** * * ** ** * *
16187417 GTTTT-TTTCCACCGTTTTTTTCACTTGACTAG-TATAGGAAACTTGAATTGTGGTGAAAGTTGA
131 GTTTTATTTCC-CCCCTTTTTTCACTCGGCGCGCTATCTGAAAGTTGAATTGTGGTGAAATTTGA
* * * * *
16187480 CAATGCAAAACAAGTG--GAATATAATGTT-AAAAAAATAAAAGAAAAAAACTAATGTTTTTGAA
195 CAATGCAAAACAAGTGATAAATA-AATGTTCAAAAATAT-AAAGAGAAACAC--ATGTTTTTGGA
* * ** * * *
16187542 GATATTTAAGCGAAATTTTCAATGAAAAATTAGAGTCATAATTACAATAGAAACAACAAACAAAT
256 GATATTTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAAT
*
16187607 ATGGTAGGAAA
321 ATGGTACGAAA
16187618 CATGTCTAAT
Statistics
Matches: 1265, Mismatches: 169, Indels: 52
0.85 0.11 0.03
Matches are distributed among these distances:
372 203 0.16
373 6 0.00
374 50 0.04
375 133 0.11
376 77 0.06
377 58 0.05
378 276 0.22
379 59 0.05
380 68 0.05
381 306 0.24
382 29 0.02
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (382 bp):
TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAAGTTGAA
AATAGGGAGCGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTTTAT
GTTTTATTTCCCCCCTTTTTTCACTCGGCGCGCTATCTGAAAGTTGAATTGTGGTGAAATTTGAC
AATGCAAAACAAGTGATAAATAAATGTTCAAAAATATAAAGAGAAACACATGTTTTTGGAGATAT
TTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGT
ACGAAATAGTTATCTTGGTTGGCCTCTAACCAATTGGATATTTTGCATTTTCAGACA
Found at i:16188437 original size:964 final size:960
Alignment explanation
Indices: 16186918--16188793 Score: 2391
Period size: 964 Copynumber: 1.9 Consensus size: 960
16186908 GACACAAAAT
* * * *
16186918 ACTTGAAACAAAAGAAGATCAAAGAAAACAGTTATATCAAAAGTGAAGCTGAAAATAGGGAGTGA
1 ACTTGAAACAAAAGAAGATCAAAGAAAACAGTTATATCAAAAGTGAAGATGAAAACAAGGAATGA
* * * *
16186983 AGCCTTTTAGGGAAATAGACATGATTGTATAAGCAACACTAAACACTTTTTATGTTTTGTTTCCC
66 AGCCTTTAAGGGAAATAAACAAGATTGTATAAGCAACACTAAACACTTTTTATATTTTGTTTCCC
* * * * * *
16187048 CACTTTTTTCACTCGGCGCGCATATCTAAAAGTTGAATTGTGGTGAAATTTTACAATGCAAAACA
131 CACATTATTCACTCGGCACGCATATCTAAAACTTGAATTGAGGTGAAATTTGACAATGCAAAACA
* *
16187113 AGTGATAAATAAATTTCAAAAAAATAAAGAGAAACACATGTTTTTAGTAATATTTAAGCGTACTT
196 AGTGATAAATAAATTTCAAAAAAATAAAGAAAAACACATGTTTTTAGTAATATTTAAGCGAACTT
**
16187178 TCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTAGGAAGCAGGTA
261 TCCAAAGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTAGGAAGCAGGTA
* * * * *
16187243 TCTTGGTTGGCCTCTAACCAATTGGATAATTTGTATTATCAGACTTGACACAAAATACTTGGAAT
326 TCTTGGTTGGCCTCTAACCAATTGGATAATCTGAATTATCAGACGTGACACAAAATACTTGAAAC
** * ** * * *
16187308 AATAGTTGATCAAAGCAAATAGTTTATATCGAAAGTGAGGTTGAAAAAAGGGAGCGAGCCTTTAA
391 AATAGAAGATCAAAGAAAATAGTTTATATAAAAAGTGAGGATGAAAAAAGGGAGAGAGACTTTAA
* *
16187373 AAGAAATAGACATGATTGTATAAACACCTCAAAACCCTTTTTATGTTTTTTTCCACCGTTTTTTT
456 AAGAAATAGACATGATTGTATAAACACCTCAAAACCCTTTTTATATTTTTTTCCACCG-TTTATT
* *
16187438 CACTTGACTAGTATAGGAAACTTGAATTGTGGTGAAAGTTGACAATGCAAAACAAGTGGAATATA
520 CACTCGACTAGTATAGGAAACTTGAATTGTGGTGAAAGTTGACAACGCAAAACAAGTGGAATATA
* *
16187503 ATGTTAAAAAAATAAAAGAAAAAAACTAATGTTTTTGAAGATATTTAAGCGAAATTTTCAATGAA
585 ATGTT-AAAAAAT-AAA-AAAAAAACTAATGTTTTTGAAAATATTTAAGCGAAATTTCCAATGAA
* *
16187568 AAATTAGAGTCATAATTACAATAGAAACAACAAACAAATATGGTAGGAAACATGTCTAATGGTTC
647 AAATTAGAGTCATAATTACAATAGAAACAACAAACAAATATGGTAGGAAACAGGTATAATGGTTC
* * ** *
16187633 GCCTCTAAGAAATTGGATACACTATATTTTTAG-ACT-TTTAAATGGGTCCGCCTTGATTTTGTC
712 GCCTCTAACAAATTAGATACACTATA-TTTTAGTACTCTTTAAATGGGTCAACCTCGATTTTGTC
* * * *
16187696 TTCACTTCTCTTTTTA-TATTTTCCCCCCTTCAAATTGCTATATTTTGCAATGCAATTACACTCT
776 TTCACCTCTCTTTTTATTATTTT-CCCCATTCAAATTGCTATATGTTGCAATGCAATTACACTAT
* * * * *
16187760 ATTTATTTATTTGGACATTCTGGAAACATTTAGAAACTTGGCACTTTTACCGTGAGTCGTTACTT
840 ATTTATTTATATGGACATTCTGGAAACA--TAGAAACTCGACACTTTTACCGTGAGTCGTCAATT
16187825 TCTTCTTGCAATTTTTTAGACAATTTTTTTTTATGTATAAATTCATTAGAGAACTTAA
903 TCTTCTTGCAATTTTTTAGACAATTTTTTTTTATGTATAAATTCATTAGAGAACTTAA
* * * * * *
16187883 ACTTGACACAGAAGAAGATCAAAGCATAGAGTTTATATCAAAAG-GATGGATGAAAACAAGGAAT
1 ACTTGAAACAAAAGAAGATCAAAGAAAACAG-TTATATCAAAAGTGA-AGATGAAAACAAGGAAT
* * *
16187947 GAAGCCTTTAAGGGAAATAAACAAGATTGTATAAGTATTC-CTAAACTCTTTTTATATTTTGTTT
64 GAAGCCTTTAAGGGAAATAAACAAGATTGTATAAGCA-ACACTAAACACTTTTTATATTTTGTTT
* * * *
16188011 CCTCACCATTATTCACTC-G-ACGCATATTTGAAACTTGAATTGAGGTG-AATTTCGATAATGCA
128 CCCCA-CATTATTCACTCGGCACGCATATCTAAAACTTGAATTGAGGTGAAATTT-GACAATGCA
* * *
16188073 AAACAAGTGATAAAT-AATGTT--AAAAAATAAAAGAAAAATACATGTTTTTTGTGATATTTAAG
191 AAACAAGTGATAAATAAAT-TTCAAAAAAAT-AAAGAAAAACACATGTTTTTAGTAATATTTAAG
* * * * *
16188135 CGAACTTTCCAAAGAAAGATTAGAGTCGTAATTATAGTGGAAACAACCGACAAATATGGTAGGAA
254 CGAACTTTCCAAAGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTAGGAA
* * ** *
16188200 GCTGTTATCTTGGTTGGCCTCTAACCAATTGGATTCTCTGCAATT-TCAGACGTGACACAAAATG
319 GCAGGTATCTTGGTTGGCCTCTAACCAATTGGATAATCTG-AATTATCAGACGTGACACAAAATA
* *
16188264 CTTGAAACAATAGAAGATCAAAGAAAATAGTTTATATAAAAAGTGAGGATGAGAATAGGGAGAGA
383 CTTGAAACAATAGAAGATCAAAGAAAATAGTTTATATAAAAAGTGAGGATGAAAAAAGGGAGAG-
* * **
16188329 AGACTTTAAAGGAAATAGACATGATTGTATAAGA-ACC-CTAAATTCTTTTTATATTTTTCTTCC
447 AGACTTTAAAAGAAATAGACATGATTGTATAA-ACACCTCAAAACCCTTTTTATATTTTT-TTCC
* * *
16188392 ATCC-TTTATTCACTCG-TTGTGTATAGCG-ATCTTGAATTGTGGTGAAAGTTGACAACGCAAAA
510 A-CCGTTTATTCACTCGACT-AGTATAG-GAAACTTGAATTGTGGTGAAAGTTGACAACGCAAAA
* * * * * *
16188454 CAAGTGGTATATAATGTTCAAAAATAAAACAAGAACTAATGTTTTTGAAAATATTTAAGTGAACT
572 CAAGTGGAATATAATGTTAAAAAATAAAAAAAAAACTAATGTTTTTGAAAATATTTAAGCGAAAT
* * * * * * *
16188519 TTCCAATGAAAGATTAGAGTCATTATTACAATGGAAACAATAGACAAATATGGTAGGGAGCAGGT
637 TTCCAATGAAAAATTAGAGTCATAATTACAATAGAAACAACAAACAAATATGGTAGGAAACAGGT
* * * * * *
16188584 ATCATGGTTGGCCTTTAACTAATTAGATACTCTATATTTTCGTACTCTTTAAATGGGTCAACCTC
702 ATAATGGTTCGCCTCTAACAAATTAGATACACTATATTTTAGTACTCTTTAAATGGGTCAACCTC
***
16188649 GATTTTGTCTTCACCTCTCTTTTTATTTATTTTCCCCATTGGTATTGCTATATGTTGCAATGCAA
767 GATTTTGTCTTCACCTCTCTTTTTA-TTATTTTCCCCATTCAAATTGCTATATGTTGCAATGCAA
* * ** *
16188714 TTACTCTATATTTATTTATATGGATATTCTGGAAACATAGAAACTCGACACTTTTATTGTGAGTG
831 TTACACTATATTTATTTATATGGACATTCTGGAAACATAGAAACTCGACACTTTTACCGTGAGTC
16188779 GTCAATTTCTTCTTG
896 GTCAATTTCTTCTTG
16188794 ATATTTCTTT
Statistics
Matches: 778, Mismatches: 115, Indels: 40
0.83 0.12 0.04
Matches are distributed among these distances:
960 5 0.01
961 155 0.20
962 42 0.05
963 74 0.10
964 287 0.37
965 117 0.15
966 87 0.11
967 11 0.01
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (960 bp):
ACTTGAAACAAAAGAAGATCAAAGAAAACAGTTATATCAAAAGTGAAGATGAAAACAAGGAATGA
AGCCTTTAAGGGAAATAAACAAGATTGTATAAGCAACACTAAACACTTTTTATATTTTGTTTCCC
CACATTATTCACTCGGCACGCATATCTAAAACTTGAATTGAGGTGAAATTTGACAATGCAAAACA
AGTGATAAATAAATTTCAAAAAAATAAAGAAAAACACATGTTTTTAGTAATATTTAAGCGAACTT
TCCAAAGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTAGGAAGCAGGTA
TCTTGGTTGGCCTCTAACCAATTGGATAATCTGAATTATCAGACGTGACACAAAATACTTGAAAC
AATAGAAGATCAAAGAAAATAGTTTATATAAAAAGTGAGGATGAAAAAAGGGAGAGAGACTTTAA
AAGAAATAGACATGATTGTATAAACACCTCAAAACCCTTTTTATATTTTTTTCCACCGTTTATTC
ACTCGACTAGTATAGGAAACTTGAATTGTGGTGAAAGTTGACAACGCAAAACAAGTGGAATATAA
TGTTAAAAAATAAAAAAAAAACTAATGTTTTTGAAAATATTTAAGCGAAATTTCCAATGAAAAAT
TAGAGTCATAATTACAATAGAAACAACAAACAAATATGGTAGGAAACAGGTATAATGGTTCGCCT
CTAACAAATTAGATACACTATATTTTAGTACTCTTTAAATGGGTCAACCTCGATTTTGTCTTCAC
CTCTCTTTTTATTATTTTCCCCATTCAAATTGCTATATGTTGCAATGCAATTACACTATATTTAT
TTATATGGACATTCTGGAAACATAGAAACTCGACACTTTTACCGTGAGTCGTCAATTTCTTCTTG
CAATTTTTTAGACAATTTTTTTTTATGTATAAATTCATTAGAGAACTTAA
Found at i:16190891 original size:944 final size:955
Alignment explanation
Indices: 16189030--16190899 Score: 2870
Period size: 944 Copynumber: 2.0 Consensus size: 955
16189020 CACAAAACTC
* * *
16189030 TTTTTGTATTTTTTTTGCCACCCTTTTTTCACTCGGCGCGTATAGTAAACTTTAATTGTTGTGAA
1 TTTTTGTATTTTTTTTGCCACCCTTTTTTAAATCGGCGCGTATAGGAAACTTTAATTGTTGTGAA
* *
16189095 AGTTGATAACGCAAAACAAGTGGTATTTAATGTTAAAAAAATAAAAGAAAAACTAATGTTTTTGA
66 AGTTGATAACGCAAAACAAGTGGTATATAATATTAAAAAAATAAAAGAAAAACTAATGTTTTTGA
* *
16189160 AGTTATTTAAACAAAATTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAAGACAA
131 AGATATTTAAACAAAATTTCCAATGAAAGATTAGAATCATAATTACAATGGAAACAACAAGACAA
* * *
16189225 ATATGGTAGGAAACATGTATCATGTTTGGCCTCTAACAAATTGGATACTCTCCATTTTAAGACTT
196 ATATGATAGGAAACATGTATCATGGTTGGCCTCTAACAAATTGGATACTCTCCATTTTAAGAATT
* *
16189290 TTTAAATGGGTCAACCTCGATTTTTTCTTCATCTCACTTTTTATTTATTTTTCCCCTCAATATTG
261 TTTAAATGGGTCAACCTCGATTTTGTCTTCATCTCACTTTTTATTTATTTTCCCCCTCAATATTG
* * *
16189355 CAATATGCTGCAGTGCAGTTACTCTCTATTTATTTAAAAGGATATTCTTGAAACATATAGGAACT
326 CAATATGCTGCACTACAGTTACTCTCTATTTATTTAAAAGGATATTCTTGAAACACATAGGAACT
* * * * * *
16189420 TGTCACATTTACTGTGATCCATTAGTTTATTCTTGATATTTTTTAAACAAATTTTTATGTACAAA
391 TGTCACATTTACTATAAGCC---AGTTTA----TG--ATTTATTAAACAAACTTTTATATACAAA
*
16189485 TTCATTAAAGAACTTAAACTTGACACAAAAGACTTGAGACAAAAGAAGATCAAAGAAAATGGTTT
447 TTCATTAAAGAACTTAAACTTGACACAAAAGACTTGAGACAAAAGAAGATCAAAGAAAAGGGTTT
*
16189550 ATATCAAAAGTGAGGATGAAAATAGGGAGTAAAGCCTTTAAGAGAAATATACACGATTGTATAAG
512 ATATCAAAAGTGAGGATGAAAACAGGGAGTAAAGCCTTTAAGAGAAATATACACGATTGTATAAG
* * *
16189615 CACCCCAAACTCGTTTTATGTTTCGTTTCCCTCTTTTTTCACTCTGTGCATTTCTGAAACTTGAA
577 CACCCCAAACTCGTTTTATATTTCGTTTCCCTCTTTTTTCACTCGGTGCATATCTGAAACTTGAA
** *
16189680 TTGTGATTAAATTTGACAATGCAAAACAAGTGATAAATAATGTTTAAAAATAAAAGAGGAACACA
642 TTGTGATT--AGGTGACAATGCAAAACAACTGATAAATAATGTTTAAAAATAAAAGAGGAACACA
** *
16189745 TGTTTTTGAAGATATTTAAGCGAACTTTCTGTTGAAAGATTAGGGTTATAATTACAATGGAAACA
705 TGTTTTTGAAGATATTTAAGCGAACTTTCCATTGAAAGATTAGGGTCATAATTACAATGGAAACA
* * * *
16189810 ACAGACAAATATGGTACGAAACAGTTATCATGGTGGGCTTCTAACCAATTGAATATTTTGCATGT
770 ACAGACAAATATGGTACGAAACAATTATCATAGTGGGCCTCTAACCAATTGAATATTCTGCATGT
* * *
16189875 TAAGATATGACACAAATTACTTGAAACAAAAGAAGATCGAAGAAAACAGTTTATATCGAAAGTGA
835 TAAGAAATGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGA
16189940 AGTTGAAAATAAGGAGTGAAATTGAAACAAAAGAAGATCAAAGAAAATAGTTATAT
900 AGTTGAAAATAAGGAGTGAAATTGAAACAAAAGAAGATCAAAGAAAATAGTTATAT
* ** *
16189996 TTTTATGT-TTTTTTTTGCCACCCTTTTTTAAATTGGCTTGTGTAGGAAACTTTAATTGTTGTGA
1 TTTT-TGTATTTTTTTTGCCACCCTTTTTTAAATCGGCGCGTATAGGAAACTTTAATTGTTGTGA
*
16190060 AAGTTGATAATGCAAAACAAGTGGTATATAATATT-AAAAAATAAAAGAAAAACTAATGTTTTTG
65 AAGTTGATAACGCAAAACAAGTGGTATATAATATTAAAAAAATAAAAGAAAAACTAATGTTTTTG
16190124 AAGATATTTAAACAAAATTTCCAATGAAAGATTAGAATCATAATTACAATGGAAACAAC-AGACA
130 AAGATATTTAAACAAAATTTCCAATGAAAGATTAGAATCATAATTACAATGGAAACAACAAGACA
*
16190188 AATATGATAGGAAACATGTATCATGGTTGGCCTCTGACAAATTGGATACTCTCCATTTTAAGAAT
195 AATATGATAGGAAACATGTATCATGGTTGGCCTCTAACAAATTGGATACTCTCCATTTTAAGAAT
**
16190253 TTTTAAATGGGTCAACCTCGATTTTGTCTTCATCTCTTTTTTTATTTATTTTCCCCCTCAATATT
260 TTTTAAATGGGTCAACCTCGATTTTGTCTTCATCTCACTTTTTATTTATTTTCCCCCTCAATATT
* * * * *
16190318 GCAATATGTTGCACTATAGTTACTCTCTATTTATTTATATGGATATTCTTGAAACACATTGGAAC
325 GCAATATGCTGCACTACAGTTACTCTCTATTTATTTAAAAGGATATTCTTGAAACACATAGGAAC
* *
16190383 TTGTCACATTTACTATAAGCC-G-TTA-G-TTTATTAAAGAAACTTTTATATATAAATTCATTAA
390 TTGTCACATTTACTATAAGCCAGTTTATGATTTATTAAACAAACTTTTATATACAAATTCATTAA
* *
16190444 AGAACTTAAACTTGACACAAAAGACTTGATACAAAAGAAGATCAAAGAAAAGGGTTTATATC-GA
455 AGAACTTAAACTTGACACAAAAGACTTGAGACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAA
* * *
16190508 AGTGAGGATGAAAACAGGGAGTGAAGCCTTTAAGGGAAATATACACGATTGTCTAAGCACCCCAA
520 AGTGAGGATGAAAACAGGGAGTAAAGCCTTTAAGAGAAATATACACGATTGTATAAGCACCCCAA
* *
16190573 ACTCGTTTTCTATTTCGTTTCCCCCTTTTTTTTCACTCGGTGCATATCTGAAACTTGAA-T-T-A
585 ACTCGTTTTATATTTCGTTT--CCCTCTTTTTTCACTCGGTGCATATCTGAAACTTGAATTGTGA
16190635 -T-GGTGA-AATGCAAAACAACTGATAAATAATGTTTAAAAATAAAAGA-GAAGCACATGTTTTT
648 TTAGGTGACAATGCAAAACAACTGATAAATAATGTTTAAAAATAAAAGAGGAA-CACATGTTTTT
* *
16190696 GGAGATATTTAAGCGAACTTTCCATTGAAAGATTAGGGTCATAATTACAATGGAAACATCAGACA
712 GAAGATATTTAAGCGAACTTTCCATTGAAAGATTAGGGTCATAATTACAATGGAAACAACAGACA
* * * * *
16190761 AATATGGTACGAAACAATTGTCTTAGTTGGCCTCTAACCAATTGAATATTCTGCATTTTCAGAAA
777 AATATGGTACGAAACAATTATCATAGTGGGCCTCTAACCAATTGAATATTCTGCATGTTAAGAAA
* *
16190826 TGACACAAAATGCTTGAAATAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTTGAA
842 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTTGAA
16190891 AATAAGGAG
907 AATAAGGAG
16190900 CAAAACCTTT
Statistics
Matches: 830, Mismatches: 70, Indels: 30
0.89 0.08 0.03
Matches are distributed among these distances:
943 3 0.00
944 235 0.28
945 3 0.00
948 1 0.00
949 1 0.00
950 81 0.10
951 91 0.11
952 34 0.04
954 1 0.00
959 3 0.00
960 1 0.00
964 202 0.24
965 86 0.10
966 85 0.10
967 3 0.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (955 bp):
TTTTTGTATTTTTTTTGCCACCCTTTTTTAAATCGGCGCGTATAGGAAACTTTAATTGTTGTGAA
AGTTGATAACGCAAAACAAGTGGTATATAATATTAAAAAAATAAAAGAAAAACTAATGTTTTTGA
AGATATTTAAACAAAATTTCCAATGAAAGATTAGAATCATAATTACAATGGAAACAACAAGACAA
ATATGATAGGAAACATGTATCATGGTTGGCCTCTAACAAATTGGATACTCTCCATTTTAAGAATT
TTTAAATGGGTCAACCTCGATTTTGTCTTCATCTCACTTTTTATTTATTTTCCCCCTCAATATTG
CAATATGCTGCACTACAGTTACTCTCTATTTATTTAAAAGGATATTCTTGAAACACATAGGAACT
TGTCACATTTACTATAAGCCAGTTTATGATTTATTAAACAAACTTTTATATACAAATTCATTAAA
GAACTTAAACTTGACACAAAAGACTTGAGACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAA
GTGAGGATGAAAACAGGGAGTAAAGCCTTTAAGAGAAATATACACGATTGTATAAGCACCCCAAA
CTCGTTTTATATTTCGTTTCCCTCTTTTTTCACTCGGTGCATATCTGAAACTTGAATTGTGATTA
GGTGACAATGCAAAACAACTGATAAATAATGTTTAAAAATAAAAGAGGAACACATGTTTTTGAAG
ATATTTAAGCGAACTTTCCATTGAAAGATTAGGGTCATAATTACAATGGAAACAACAGACAAATA
TGGTACGAAACAATTATCATAGTGGGCCTCTAACCAATTGAATATTCTGCATGTTAAGAAATGAC
ACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTTGAAAATA
AGGAGTGAAATTGAAACAAAAGAAGATCAAAGAAAATAGTTATAT
Found at i:16191439 original size:355 final size:355
Alignment explanation
Indices: 16190728--16191440 Score: 791
Period size: 355 Copynumber: 2.0 Consensus size: 355
16190718 CATTGAAAGA
* * * * *
16190728 TTAGGGTCATAATTACAATGGAAACATCAGACAAATATGGTACGAAACAATTGTCTTAGTTGGCC
1 TTAGGGTCATAATTACAATGGAAACAACAGAAAAATATGCTACGAAACAAGTATCTTAGTTGGCC
* * * *
16190793 TCTAACCAATTGAATATTCTGCATTTTCAGAAATGACACAAAATGCTTGAAATAAAAGAAGATCA
66 TCTAACCAATTGAATACTCTACATTTTCAGAAATGACACAAAATACTTGAAACAAAAGAAGATCA
*
16190858 AAGAAAACAGTTTATATCGAAAGTGAAGTTGAAAATAAGGAGCAAAACCTTTTAGGGAAATAGAC
131 AAGAAAACAGTTTATATCGAAAGTGAAGTTGAAAATAAGGAGCAAAACCTTTTAGAGAAATAGAC
* * * * *
16190923 ATGATTGTACAAGCACCCCCAAACTCTGTTTATGTTTTGTTTCCCCCCATTTTTCAATTGGCGCA
196 ATGATTGTACAAACACCCCAAAACCCTGTTTATGTTTTGTTTCCCACCATTTTTCAATCGGCGCA
* * * * *
16190988 TATCTGAAAGTTGAATTGTGATGAAATTTGACAATGCAAATCAAGTGATAAATAAATTTCAAAAA
261 TATCTGAAAGTTGAATTATGATGAAAGTTGACAAGGCAAAACAAGTGATAAATAAATTTAAAAAA
* * * * **
16191053 TAAAAGAGAAACACATGTTTTGGGTGATAT
326 TAAAAGAAAAAAAAACGTTTTGGAAGATAT
* * * *
16191083 TTAGTGTCATAATTACAATGGAAATAACAGAAAAATATGCTAGGAAACAGGTATCTT-GATTGGC
1 TTAGGGTCATAATTACAATGGAAACAACAGAAAAATATGCTACGAAACAAGTATCTTAG-TTGGC
* * ** * *
16191147 CTCTAACCAATTGGATACTCTATATTTTCAGACTTGGCCCAAAATACTTGAAACAAAAGATA-AT
65 CTCTAACCAATTGAATACTCTACATTTTCAGAAATGACACAAAATACTTGAAACAAAAGA-AGAT
* * * *
16191211 CAAAGAAAATAGTTTATATTGAAAGTG-AGTTTGAAAA-CAGGAAGCAAAACC-TTTACGAGATA
129 CAAAGAAAACAGTTTATATCGAAAGTGAAG-TTGAAAATAAGG-AGCAAAACCTTTTA-GAGAAA
* * * *
16191273 TAGACATGATTGTATAAACATCCCAAAACCCTTTTTATG-TTT-TTT-CCACCATGTTTTCACTC
191 TAGACATGATTGTACAAACACCCCAAAACCCTGTTTATGTTTTGTTTCCCACCAT-TTTTCAATC
* * * * * *
16191335 GGCTCGTAT-TGGAAACG-TGAATTATGGTGAAAGTTGATAAGGCAAAACAAGTGGTATAT-AAT
255 GGCGCATATCT-GAAA-GTTGAATTATGATGAAAGTTGACAAGGCAAAACAAGTGATAAATAAAT
*
16191397 GTTAAAAAATAAAAGAAAAAAAGTAACGTTTTTGAAGATAT
318 -TTAAAAAATAAAAGAAAAAAA--AACGTTTTGGAAGATAT
16191438 TTA
1 TTA
16191441 AGTGAAATTT
Statistics
Matches: 296, Mismatches: 51, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
352 10 0.03
353 73 0.25
354 14 0.05
355 198 0.67
356 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (355 bp):
TTAGGGTCATAATTACAATGGAAACAACAGAAAAATATGCTACGAAACAAGTATCTTAGTTGGCC
TCTAACCAATTGAATACTCTACATTTTCAGAAATGACACAAAATACTTGAAACAAAAGAAGATCA
AAGAAAACAGTTTATATCGAAAGTGAAGTTGAAAATAAGGAGCAAAACCTTTTAGAGAAATAGAC
ATGATTGTACAAACACCCCAAAACCCTGTTTATGTTTTGTTTCCCACCATTTTTCAATCGGCGCA
TATCTGAAAGTTGAATTATGATGAAAGTTGACAAGGCAAAACAAGTGATAAATAAATTTAAAAAA
TAAAAGAAAAAAAAACGTTTTGGAAGATAT
Found at i:16192723 original size:285 final size:274
Alignment explanation
Indices: 16192183--16192729 Score: 623
Period size: 280 Copynumber: 2.0 Consensus size: 274
16192173 AAAGATAATA
* * * *
16192183 GTTTATATCCAATGTGAGGTTGAAAACAGGGAGCAAAGTCTTTTAGGGAAAGACATGATTGTATA
1 GTTTATATCCAATCTGAGGTTGAAAACAGGGAGCAAAGCCTTTTAGGAAAAGAAATGATTGTATA
* * * * * * ** *
16192248 AGCACCCCCAAACTCTTTTTATGTTTTGTTTCCCCTTTTTTCACTCGACGCGTATCTAAAAGTTG
66 AACACCCCAAAACCCATTGTATGTTTTGTTTCCCCTTTTTTCACTCAACGCGTATAGAAAACTTG
** * * *
16192313 AATTGTGGAGAAATTTGACAATGAAAAACAAGTGATAAATAAATTCAAAAATAAATAAGAAACAA
131 AATTGTGGAGAAAGATGACAAGGAAAAACAACTGATAAATAAATTCAAAAATAAAAAAGAAACAA
*** **
16192378 TGTTTTTGGTTATATTTAAGCGAGCTTTTCGTTGAAAGATTAGAGTCATAATTACAATGGAAACA
196 TGTTTTTGAAGATATTTAAGCGAAATTTTCGTTGAAAGATTAGAGTCATAATTACAATGGAAACA
16192443 ACCCCCCATTTTAT
261 ACCCCCCATTTTAT
* * *
16192457 GTTTATATCGAATCTGAGGTTGGAAACAGGGAGCAATGCC-TTTATGAGAAATAGAAATGATTGT
1 GTTTATATCCAATCTGAGGTTGAAAACAGGGAGCAAAGCCTTTTA-G-GAAA-AGAAATGATTGT
* * *
16192521 ATAAACATCCCCAAAACCCATTGTATGTTTTTTTCTCATCCCTTTTTTCACTCAACTCGTATAGG
63 ATAAACA-CCCCAAAACCCATTGTATGTTTTGTT-TC--CCCTTTTTTCACTCAACGCGTATAGA
* * * * *
16192586 AAACTTGAATTGTGGTGAAAGATGACAAGGCAAAACAACTGGTATAT-AATGTTAAAAATAAAAA
124 AAACTTGAATTGTGGAGAAAGATGACAAGGAAAAACAACTGATAAATAAAT-TCAAAAATAAAAA
* *
16192650 AGAAAAAAACTACTGTTTTTGAAGATATTTAAGCGAAATTTTCAG-TGAAAGATTATAGTCATAA
188 AG----AAAC-AATGTTTTTGAAGATATTTAAGCGAAATTTTC-GTTGAAAGATTAGAGTCATAA
16192714 TTACAATGGAAACAAC
247 TTACAATGGAAACAAC
16192730 AAAAAAAATG
Statistics
Matches: 223, Mismatches: 36, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
273 4 0.02
274 36 0.16
275 3 0.01
276 17 0.08
277 21 0.09
278 2 0.01
279 3 0.01
280 72 0.32
284 4 0.02
285 60 0.27
286 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (274 bp):
GTTTATATCCAATCTGAGGTTGAAAACAGGGAGCAAAGCCTTTTAGGAAAAGAAATGATTGTATA
AACACCCCAAAACCCATTGTATGTTTTGTTTCCCCTTTTTTCACTCAACGCGTATAGAAAACTTG
AATTGTGGAGAAAGATGACAAGGAAAAACAACTGATAAATAAATTCAAAAATAAAAAAGAAACAA
TGTTTTTGAAGATATTTAAGCGAAATTTTCGTTGAAAGATTAGAGTCATAATTACAATGGAAACA
ACCCCCCATTTTAT
Found at i:16194947 original size:379 final size:376
Alignment explanation
Indices: 16193437--16194953 Score: 1694
Period size: 378 Copynumber: 4.0 Consensus size: 376
16193427 AAGAACTTAA
* * * * **
16193437 ACTTGACACAAAAGACTTGACACAAAGGAAGATCAAAGAAAAGGGTTTATATCAAAAGTGAGAAT
1 ACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACGGTTTATATCAAAAGTGAGGTT
* * * * * * * * * * *
16193502 GGAAACAAGGAGTGGAGCCTTGAAAAGAAATATACACGATTGTATAAATACCCCAAACTCGTTTT
66 GAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGAAATGATTGTATAAACACCCCAAACTCTTTTT
** * **
16193567 ATGTTTCCTTACCCCTCTTTTTTCACTCGGTGCGTATCTGAAAGTT-AAGTTGTGGTGAAATTTG
131 ATGTTTTGTTTCCCCTC-TTTTTCACTCGACGCGTATCTGAAAGTTGAA-TTGTGGTGAAATTTG
* *
16193631 ACAATGCAAAACAAGTGATAA-ATAATGTTTAAAAATAAAAGAGAAACACATGTTTTTGGAGATA
194 ACAATGCAAAACAAGTGATAATA-AAT-TTCAAAAATAAAAGAGAAAAACATGTTTTTGGAGATA
* * * *
16193695 TTTAAGTGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATAGAAACAACAGACAAATTTGG
257 TTTAAGTGAAATTTCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGG
*
16193760 TATGAAACAGTTATCTTGGTTGGCCTCTAACCAATTGGATA-TCCTGCATTTTCAG
322 TAGGAAACAGTTATCTTGGTTGGCCTCTAACCAATTGGATACT-CTGCATTTTCAG
* * * * * * *
16193815 ACATGACACAAAATACTTGAAACAAAAGAAGATCAAAGATAGCAGTTTATATCGAAAGTCAAGTT
1 ACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACGGTTTATATCAAAAGTGAGGTT
* * * * *
16193880 GAAAATAGGGAGCGAAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACCCCCAAACTCTTTT
66 GAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGAAATGATTGTATAAACA-CCCCAAACTCTTTT
* ** *
16193945 TATGTTTTGTTT-CCTTCCTTTTTCACTCGACGCGTATCTGAAAGAAGAATTATGGTGAAATTTG
130 TATGTTTTGTTTCCCCT-CTTTTTCACTCGACGCGTATCTGAAAGTTGAATTGTGGTGAAATTTG
*
16194009 ACAATGCAAAACAAGTGATAAATAAATTTCAAAAATAAAAGAGAAACAA-ATGTTTTTGGTA-TT
194 ACAATGCAAAACAAGTGAT-AATAAATTTCAAAAATAAAAGAGAAA-AACATGTTTTTGG-AGAT
* * * * * *
16194072 ATTTAAG-CAAACTTTCCGTTGACATATTAGAGTCATAATTACAATGGAAACAATAGTCAAATAT
256 ATTTAAGTGAAA-TTTCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATAT
** *
16194136 GGTACAAAACAGTTATCTTGGTTGGCCTCTAACCAATTGGATATTCTGCATTTTCAG
320 GGTAGGAAACAGTTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGCATTTTCAG
* * * *
16194193 ACATGACAAAAAATACTTGAAAC-AAAGAAGATCAAAGAAAACGATTTATATCGAAAGTGAGGTT
1 ACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACGGTTTATATCAAAAGTGAGGTT
* * * * * * * *
16194257 GAAAATAGGGAGTGAAGCTTTTTAGGGAAATA-AACATGATTGTATAAGCACCCCTAAACTGTAT
66 GAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGAA-ATGATTGTATAAACACCCC-AAACTCTTT
* *
16194321 TTATGTTTTGTTTAACCCCT-TTTTTCACTCGGCGCGTATCTGAAAGTTGAATTGTGGTAAAATT
129 TTATGTTTTGTTT--CCCCTCTTTTTCACTCGACGCGTATCTGAAAGTTGAATTGTGGTGAAATT
* * *
16194385 TGACAATGCAAAACAAGTGATAAATAAATTTCAAAAATAAAAGAGAAACACATGATTTTGGTGAT
192 TGACAATGCAAAACAAGTGAT-AATAAATTTCAAAAATAAAAGAGAAAAACATGTTTTTGGAGAT
* * * * * * *
16194450 ATTTGAGCGAACTTTGCATTGAAAGATGAGAGACATAATTACAATGGAAACAACAGATAAATATG
256 ATTTAAGTGAAATTTCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATG
* * ** * * ** *
16194515 CTAGGAAGCAGGCATCTTGGTTGGACTCTAACCAATTGGATACTTTATATTTTTAG
321 GTAGGAAACAGTTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGCATTTTCAG
* *
16194571 ACTTGACACAAAATACTTGAAACAAAAGATGATCAAAGAAAATGGTTTATATCAAAAGTGAGGTT
1 ACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACGGTTTATATCAAAAGTGAGGTT
* * *
16194636 TAAAACAGTGAGCGAAGCCTTTAAGAGAAATAGAAATGATTGTATAAACACCCCAAAACCCTTTT
66 GAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGAAATGATTGTATAAACACCCC-AAACTCTTTT
* * * ** * *
16194701 TATGTTTT-TTTCCACTATTTTTCACTCGACTCGTATAGGAAACTTGAATTGTGGTGAAAGTTGA
130 TATGTTTTGTTTCCCCTCTTTTTCACTCGACGCGTATCTGAAAGTTGAATTGTGGTGAAATTTGA
* * * * *
16194765 CAACGCAAAACAAGTGGT-ATACAATGTTAAAAAATAAAAGAAAAAAACTAATGTTTTTGAAGAT
195 CAATGCAAAACAAGTGATAATA-AAT-TTCAAAAATAAAAGAGAAAAAC--ATGTTTTTGGAGAT
* * *
16194829 ATTTAAGTGAAATTTTCAATAAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATG
256 ATTTAAGTGAAATTTCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATG
* * * ** * *
16194894 GTTGGAAACA-TGTATCATGGTTCGCCTCTAAGAAATTGGATACACT-CTATTTTTAG
321 GTAGGAAACAGT-TATCTTGGTTGGCCTCTAACCAATTGGATACTCTGC-ATTTTCAG
16194950 ACTT
1 ACTT
16194954 TTTAAATGGG
Statistics
Matches: 962, Mismatches: 151, Indels: 51
0.83 0.13 0.04
Matches are distributed among these distances:
375 3 0.00
376 12 0.01
377 178 0.19
378 521 0.54
379 242 0.25
380 6 0.01
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (376 bp):
ACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACGGTTTATATCAAAAGTGAGGTT
GAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGAAATGATTGTATAAACACCCCAAACTCTTTTT
ATGTTTTGTTTCCCCTCTTTTTCACTCGACGCGTATCTGAAAGTTGAATTGTGGTGAAATTTGAC
AATGCAAAACAAGTGATAATAAATTTCAAAAATAAAAGAGAAAAACATGTTTTTGGAGATATTTA
AGTGAAATTTCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTAGG
AAACAGTTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGCATTTTCAG
Found at i:16195880 original size:377 final size:379
Alignment explanation
Indices: 16195171--16195893 Score: 842
Period size: 377 Copynumber: 1.9 Consensus size: 379
16195161 AAGAACTTAA
* * * *
16195171 ACTTGACACAAAAGAAGATCAAAGAATAGGGTTTATATCAAAAGGGAGGATGAAAACAAGGAATG
1 ACTTGAAACAAAAGAAGATCAAAGAAAAGAGTTTATATAAAAAGGGAGGATGAAAACAAGGAATG
* * *
16195236 AAGCCTTTAAAGGAAATAAAAACGATTGTATAAGTATCCCTAAACTATTTTTATGTTTTGTTTCT
66 AAGCCTTTAAAGGAAATAAAAACGATTGTATAAGTAACCCCAAACTATTTTTATGTGTTGTTTCT
* * *
16195301 CTACCATTATTCACTCGATGTGTATTTGAAACTTGAATTGTGGTGAAACTTGACAATGCAAAACA
131 CCACCATTATTCACTCGATGCGTATTAGAAACTTGAATTGTGGTGAAACTTGACAATGCAAAACA
* * ** *
16195366 AGTGATAAATAATGTTAAAAATAAAAGAGAAATACATGTTTTTTGTGATATTTAAGCGAACATTC
196 AGTGATAAATAATGTTAAAAATAAAACAAAAATACATGTTTTTTGAAATATTTAAGCAAACATTC
* * * * * * *
16195431 TAGTGAAATATTAGAGTCATAATTACAGTGTAAACAACCAACAAATATGGTACGAAGCAGTTATC
261 TAATGAAAGATTAGAGCCATAATTACAATGGAAACAACCAACAAATATGGCACGAAGCAGGTATC
*
16195496 TTGGTTGGCCTATAACCAATTGGATTCTCTGTAATTCCAGATGTGGAACAAAAT
326 ATGGTTGGCCTATAACCAATTGGATTCTCTGTAATTCCAGATGTGGAACAAAAT
* * * *
16195550 ACTTGAAACAAAAGAAGATCAAAGAAAATAGTTTATATAAAAAGTGAGGATGATAA-TAGAGAGA
1 ACTTGAAACAAAAGAAGATCAAAGAAAAGAGTTTATATAAAAAGGGAGGATGAAAACAAG-GA-A
* * * * * *
16195614 -GAAGCCTTTAAATGAAATAGACATGATTGTATAAG-AACCCCAAATTCTTTTT-T-TGTT-TTT
64 TGAAGCCTTTAAAGGAAATAAAAACGATTGTATAAGTAACCCCAAACTATTTTTATGTGTTGTTT
* * * *
16195674 CATCCACCCTTTATTCACTCGTTGCGTA-TAGCAATCTTGAATTGCT-GTGAAAGTTGACAATGC
129 C-TCCA-CCATTATTCACTCGATGCGTATTAG-AAACTTGAATTG-TGGTGAAACTTGACAATGC
* *
16195737 AAAACAAGTGGTATATAATGTTCAAAAATAAAACAAAAACTA-ATG-TTTTTGAAAATATTTAAG
190 AAAACAAGTGATAAATAATGTT-AAAAATAAAACAAAAA-TACATGTTTTTTG-AAATATTTAAG
* * *
16195800 CAAACATT-TCAATGAAAGATTAGAGCCATTATTACAATGGAAACAA-TAGAC-AATATGGCAGG
252 CAAACATTCT-AATGAAAGATTAGAGCCATAATTACAATGGAAACAACCA-ACAAATATGGCACG
* * * *
16195862 GAGTAGGTATCATGGTTGGCCTTTAACTAATT
315 AAGCAGGTATCATGGTTGGCCTATAACCAATT
16195894 AGATACTTTG
Statistics
Matches: 287, Mismatches: 46, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
375 4 0.01
376 8 0.03
377 109 0.38
378 81 0.28
379 84 0.29
380 1 0.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.30
Consensus pattern (379 bp):
ACTTGAAACAAAAGAAGATCAAAGAAAAGAGTTTATATAAAAAGGGAGGATGAAAACAAGGAATG
AAGCCTTTAAAGGAAATAAAAACGATTGTATAAGTAACCCCAAACTATTTTTATGTGTTGTTTCT
CCACCATTATTCACTCGATGCGTATTAGAAACTTGAATTGTGGTGAAACTTGACAATGCAAAACA
AGTGATAAATAATGTTAAAAATAAAACAAAAATACATGTTTTTTGAAATATTTAAGCAAACATTC
TAATGAAAGATTAGAGCCATAATTACAATGGAAACAACCAACAAATATGGCACGAAGCAGGTATC
ATGGTTGGCCTATAACCAATTGGATTCTCTGTAATTCCAGATGTGGAACAAAAT
Found at i:16197574 original size:376 final size:376
Alignment explanation
Indices: 16196827--16197633 Score: 1004
Period size: 376 Copynumber: 2.1 Consensus size: 376
16196817 TAAAGAACTT
* * ** *
16196827 AAACTTGACACAAAAGACTTGATACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAGTGAGGA
1 AAACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAGTGAAGA
** * * * *
16196892 TGAAAACAGGGAGTGAAGCCTTTATGGAAAATATACTCGATTGTCTAAGTACCCCAAATTCATTT
66 TGAAAACAGGGAGCAAAGCCTTTATGGAAAATAGACTCGATTGTATAAGCACCCCAAACTCATTT
* * *
16196957 TATGTTTCCTTACCCCTCTTTTTTCACTTGATGTGTATCTGAAACTTGAAATGTGGTGAAATTTG
131 TATGTTTCCTTACCCCTCTTATTTCACTCGACGTGTATCTGAAACTTGAAATGTGGTGAAATTTG
*
16197022 ACAAAGCAAAACAAGTGATAAATAATGTTTAAAAATAAAAGAGAAACACATGTTTTTAGAGATAT
196 ACAAAGCAAAACAAGTGATAAATAATGTTCAAAAATAAAAGAGAAACACATGTTTTTAGAGATAT
* * *
16197087 TTAAGCGAACTTTCCGTTGAAAGGTTAGAGTCATAATTACAATGGAAACAACTGACAAATATGGT
261 TTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCT
* * * * *
16197152 ACGAAACAATTATTTTGGTTGGCCTCTAACTAATTGGATTTCTGCATTTTC
326 ACGAAACAAGTATCTTGGTTGGCCTCTAACCAATTGGATCTCTGCATTTCC
* *
16197203 AAACATGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAATTTATATCGAAAGTGAAG
1 AAACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATC-AAAGTGAAG
* * *
16197268 TTGAAAATAGGGAGCAAAGCCTTT-TAGGGAAATAGACAT-GATTGTATAAGCACCCCCAAACTC
65 ATGAAAACAGGGAGCAAAGCCTTTAT-GGAAAATAGAC-TCGATTGTATAAGCA-CCCCAAACTC
* * * * * *
16197331 TTTTTATGCTTT-GTTTCCTCC-C-TATTTCACTCGACGTGTATTTGAAAGTTGAATTGTGGTGA
127 ATTTTATG-TTTCCTTACC-CCTCTTATTTCACTCGACGTGTATCTGAAACTTGAAATGTGGTGA
** * * * * *
16197393 AATTTGACATTG-AAAACAAGTGATAAATAAAT-TTCAAAAATTAATGAGAAGCACTTGTTTTTG
190 AATTTGACAAAGCAAAACAAGTGATAAAT-AATGTTCAAAAATAAAAGAGAAACACATGTTTTTA
* * * *
16197456 GTGATATTTAAGCGAACTTTTCC-TTGAATGATTAGAGTCATAATTATAGTGGAAACAACAGAC-
254 GAGATATTTAAGCGAAC-TTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACA
* * *
16197519 AATATGCTAGGAAGCAGGTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGCATTTCC
318 AATATGCTACGAAACAAGTATCTTGGTTGGCCTCTAACCAATTGGAT-CTCTGCATTTCC
* *
16197579 AGACTTGACACAAAATACTTGAAACAAAAG-AGAATCAAAGAAAATAGTTTATATC
1 AAACTTGACACAAAATACTTGAAACAAAAGAAG-ATCAAAGAAAACAGTTTATATC
16197634 CAATGTGAGA
Statistics
Matches: 369, Mismatches: 52, Indels: 20
0.84 0.12 0.05
Matches are distributed among these distances:
375 42 0.11
376 200 0.54
377 100 0.27
378 22 0.06
379 5 0.01
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (376 bp):
AAACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAGTGAAGA
TGAAAACAGGGAGCAAAGCCTTTATGGAAAATAGACTCGATTGTATAAGCACCCCAAACTCATTT
TATGTTTCCTTACCCCTCTTATTTCACTCGACGTGTATCTGAAACTTGAAATGTGGTGAAATTTG
ACAAAGCAAAACAAGTGATAAATAATGTTCAAAAATAAAAGAGAAACACATGTTTTTAGAGATAT
TTAAGCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCT
ACGAAACAAGTATCTTGGTTGGCCTCTAACCAATTGGATCTCTGCATTTCC
Found at i:16199063 original size:378 final size:380
Alignment explanation
Indices: 16198358--16199233 Score: 1037
Period size: 378 Copynumber: 2.3 Consensus size: 380
16198348 GTTCGGGAGT
* * * *
16198358 TATTTAAGTGAACTTTCCATTGAAAGATTAGTGTCATAATTACAATAGAAACAACAGACAAATAT
1 TATTTAAGCGAACTTTTCATTGAAAGATTAGTGTCATAATTACAATGGAAACAATAGACAAATAT
* * * * *
16198423 GGTACGAAACAATTATCTTGGTTGGCCTCTAACCAATTGGATATTCTGCATTTTCAGACACGATA
66 GGTAGGAAACAAGTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGTATTTTCAGACACGACA
* * *
16198488 CAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATTTCAAAAGTGAAGTTGAAAATAA
131 AAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAAGTTGAAAACAA
* * * * * *
16198553 GGAGCAAAGACTTTTAGGGAAATATACATGATTGTATAAGCAACCCCAAACTCTTTCTATGTTTT
196 GGAGCAAAGACTTTAAGAGAAATAGACATGATTGTATAAACAACCCAAAACCCTTTCTATGTTTT
* * * * ** * * * *
16198618 GGTCCCCCCTTTTTTCACTCAGCGCGTATCTAAAAGTGGAATTGTGGTGAAATTTGTCAATGCAA
261 GGTCCACCCTGTTTTCACCCAGCGCATATAGAAAACTGGAATTGTGGTGAAAGTTGACAAGGCAA
* * * **
16198683 AACAAGTGATAAATAAAT-TTTAAATATAAAA-AAGAAA-C-ACATGTTTTTGGTGA
326 AACAAGTGATAAAT-AATGTTAAAAAATAAAAGAAAAAAGCTA-ATGTTTTTGAAGA
* *
16198736 TATTTAAGCGAACTTTTCATTGATAGATCAGTGTCATAATTACAATGGAAACAATAGACAAATAT
1 TATTTAAGCGAACTTTTCATTGAAAGATTAGTGTCATAATTACAATGGAAACAATAGACAAATAT
* * **
16198801 GCTAGGAAGA-ACGTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGTATTTTCAGACTTGAC
66 GGTAGGAA-ACAAGTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGTATTTTCAGACACGAC
* * * *
16198865 AAAAAATACTTGAAACAATAGATGATCAAAGAAAATAGTTTATATCGAAAGTG-AGTTTGAAAAC
130 AAAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAAG-TTGAAAAC
* * * *
16198929 AGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTATAAACATCCCAAAACCCTCTT-TATGT
194 AAGGAGCAAAGACTTTAAGAGAAATAGACATGATTGTATAAACAACCCAAAACCCT-TTCTATGT
** * * * * * *
16198993 TTTTTTTCACCGTGTTTTCACCCGGCTCATATAGGAAACTTGAATTGTGGTGAAAGTTGACAAGG
258 TTTGGTCCACCCTGTTTTCACCCAGCGCATATAGAAAACTGGAATTGTGGTGAAAGTTGACAAGG
* *
16199058 CAAAACAAGTGGTATATAATGTTAAAAAATAAAAGAAAAAAGCTAATGTTTTTGAAGA
323 CAAAACAAGTGATAAATAATGTTAAAAAATAAAAGAAAAAAGCTAATGTTTTTGAAGA
* * * *
16199116 TATTTAAGCGAAATTTTCAATGAAAGATTAGAGTCATAATTACAATGGAAACAATTGACAAATAT
1 TATTTAAGCGAACTTTTCATTGAAAGATTAGTGTCATAATTACAATGGAAACAATAGACAAATAT
* * * * ** * *
16199181 GGTAGGAAACATGTATCATGGTTCGCCTCAAAGAAATTGGATACACTCTATTT
66 GGTAGGAAACAAGTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGTATTT
16199234 CTAGAATTTT
Statistics
Matches: 418, Mismatches: 72, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
377 5 0.01
378 290 0.69
379 9 0.02
380 113 0.27
381 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (380 bp):
TATTTAAGCGAACTTTTCATTGAAAGATTAGTGTCATAATTACAATGGAAACAATAGACAAATAT
GGTAGGAAACAAGTATCTTGGTTGGCCTCTAACCAATTGGATACTCTGTATTTTCAGACACGACA
AAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAAGTTGAAAACAA
GGAGCAAAGACTTTAAGAGAAATAGACATGATTGTATAAACAACCCAAAACCCTTTCTATGTTTT
GGTCCACCCTGTTTTCACCCAGCGCATATAGAAAACTGGAATTGTGGTGAAAGTTGACAAGGCAA
AACAAGTGATAAATAATGTTAAAAAATAAAAGAAAAAAGCTAATGTTTTTGAAGA
Found at i:16201872 original size:377 final size:374
Alignment explanation
Indices: 16201113--16202175 Score: 1053
Period size: 367 Copynumber: 2.9 Consensus size: 374
16201103 AAGAACTTAA
* * ** *
16201113 ACTTGACACAAAAGACTTGATACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAAGTGAGGAT
1 ACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGTT
* * * * *
16201178 GAAAACAAGGAGTGAAGCC-TTTAAAGGAAATATACACGATTGTCTAAGCACCCCAAACTCGT-T
66 GAAAACAGGGAGTGAAGCCTTTTAGA-GAAATAGACATGATTGTATAAGCACCCCAAACTC-TAT
* * ** * ** * *
16201241 TTACGTTTCGTTTTCTCTTTTTTT-TAACTCGGTGCATATCTGAAACTTGAGTTGTGGTGAAATT
129 TTAAGTTTTG-TCCCCCTTTTTTTCT--CTCGACGCGTATCTGAAA-TTGAATTGTGGTGAAATT
** *
16201305 TGACAAAGCAAAATTAGTGATAAATAATGTTTAAAAATAAAAGAGAAAAACATGTTTTTGGAT-A
190 TGACAAAGCAAAACAAGTGATAAATAATGTTAAAAAATAAAAGAGAAAAACATGTTTTTGG-TGA
* * *
16201369 TATTTAAGTGAAC-TTTC-----CG-TT---GTCATAATTACAATGGAAACAACAGATAAATATG
254 TATTTAAGCGAACATTTCATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATG
** * * * * * *
16201424 GTACGAAACAGTTATCTTGGTTGGCCTTTAACCAATTGGATATTCTGCATTTTCAG
319 CCACGAAACAGGTATCATGGCTAGCCTCTAACCAATTGGATACTCTGCATTTTCAG
** * *
16201480 AAATGACACAAAATACTTGAAACAAAAGAAGATAAAAGAAAACAGTTTATATCAAAAGTGAAGTT
1 ACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGTT
*
16201545 GAAAATAGGGAGTGAAGCCTTTTAGAGAAATAGACATGATTGTATAAGCACCCCTAAACTCTATT
66 GAAAACAGGGAGTGAAGCCTTTTAGAGAAATAGACATGATTGTATAAGCACCCC-AAACTCTATT
* *
16201610 TATGTTTTGTCCCCCTTTTTTTCTCTCGACGCGTATCTAAAAGTTGAATTGTGGTGAAATTTGAC
130 TAAGTTTTGTCCCCCTTTTTTTCTCTCGACGCGTATCTGAAA-TTGAATTGTGGTGAAATTTGAC
* * * * * *
16201675 AATGCAAAACAAGTGATAAATAAAT-TTCAAAATTAAATGAGAAATACATGTTTTTGGTGATATA
194 AAAGCAAAACAAGTGATAAAT-AATGTTAAAAAATAAAAGAGAAAAACATGTTTTTGGTGATATT
*
16201739 TAAGCGAACATTTCATTGAAAGATTAGAGTCATAATTACAATGCAAACAACAGACAAATATGCCA
258 TAAGCGAACATTTCA-TGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCCA
* *
16201804 GGAAGCAGGTATCATGGCTAGCCTCTAACCAATTGGATACTCTGCATTTTCAG
322 CGAAACAGGTATCATGGCTAGCCTCTAACCAATTGGATACTCTGCATTTTCAG
* * *
16201857 ACTTGACAGAAAATACTTGAAACAAAAGATA-ATCAAATAAAATAG-TT-TAT----A-TGAGGT
1 ACTTGACACAAAATACTTGAAACAAAAGA-AGATCAAAGAAAACAGTTTATATCAAAAGTGAGGT
* * * * * *
16201914 TGAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGAAATGATTGTATAAACATCCTCAAAAC-CCA
65 TGAAAACAGGGAGTGAAGCCTTTTAGAGAAATAGACATGATTGTATAAGCA-CC-CCAAACTCTA
* * * ** *
16201978 TTTTAAGTTTTTTTCCACCCGTTTTTTCAT-TCGACTCGTATAGGATATCTGAATTGTGGTGAAA
128 -TTTAAG-TTTTGTCC-CCCTTTTTTTC-TCTCGACGCGTATCTGAAAT-TGAATTGTGGTGAAA
* * * * * ** *
16202042 GTTGACAACGCAAAACAAGTGGTATATAATGTTAAAAAATAAAAGAAAAAAACTACTAATTTTGA
188 TTTGACAAAGCAAAACAAGTGATAAATAATGTTAAAAAATAAAAGAGAAAAAC-A-TGTTTTTGG
* * * *
16202107 AGATATTTAAGCGAA-ATTTTCAATGAAAGATTAGAGCCATAATTACAATGGAAACGATAGACAA
251 TGATATTTAAGCGAACA-TTTC-ATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAA
16202171 ATATG
314 ATATG
16202176 GTAGGAAACA
Statistics
Matches: 578, Mismatches: 88, Indels: 52
0.81 0.12 0.07
Matches are distributed among these distances:
365 1 0.00
366 93 0.16
367 116 0.20
368 21 0.04
370 53 0.09
371 12 0.02
372 12 0.02
373 78 0.13
374 5 0.01
375 68 0.12
376 3 0.01
377 115 0.20
378 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (374 bp):
ACTTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGTT
GAAAACAGGGAGTGAAGCCTTTTAGAGAAATAGACATGATTGTATAAGCACCCCAAACTCTATTT
AAGTTTTGTCCCCCTTTTTTTCTCTCGACGCGTATCTGAAATTGAATTGTGGTGAAATTTGACAA
AGCAAAACAAGTGATAAATAATGTTAAAAAATAAAAGAGAAAAACATGTTTTTGGTGATATTTAA
GCGAACATTTCATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCCACGAA
ACAGGTATCATGGCTAGCCTCTAACCAATTGGATACTCTGCATTTTCAG
Found at i:16203323 original size:20 final size:20
Alignment explanation
Indices: 16203285--16203323 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
16203275 AGGAATTTAA
*
16203285 GGATCAAAATTGAAATTTTT
1 GGATCAAAATCGAAATTTTT
* *
16203305 GGATTAAAATCGAACTTTT
1 GGATCAAAATCGAAATTTT
16203324 GGAAAATTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (20 bp):
GGATCAAAATCGAAATTTTT
Found at i:16203518 original size:59 final size:61
Alignment explanation
Indices: 16203405--16203671 Score: 237
Period size: 59 Copynumber: 4.5 Consensus size: 61
16203395 GCAAATGGTA
* ** * * *
16203405 AATTTTGG-AAACTTTTTGGGTTAAAATGTAATTTTAGAAAAGTTTTA-GGGTGAAATATG-
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGAAATTTTAGAAAA-ATTTAGGGGTGAAATATGT
* *
16203464 ATTTTTGGAAAAGTTTAGGGGTGAAAATGAAATTTTGGAAAAATTT-GGGGTGAAA-ATGT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGAAATTTTAGAAAAATTTAGGGGTGAAATATGT
* * * *
16203523 GATTTTGAAAAAGTTTAGGGGTGAAAAT-ATGATTTTAGAATAAATTTAGGGGTTAAA-ATGT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGA-AATTTTAGAA-AAATTTAGGGGTGAAATATGT
* *** * * *
16203584 AATTTTGGAAAAGTTTA-GGGTGGAAATGTGGTTTTGGAAAAGTTTAGGGGT-AAAAATGT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGAAATTTTAGAAAAATTTAGGGGTGAAATATGT
* * * *
16203643 AATTTTGGAGAAGTTCAGGAGTCAAAATG
1 AATTTTGGAAAAGTTTAGGGGTGAAAATG
16203672 TGATTTTTAA
Statistics
Matches: 173, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
58 7 0.04
59 81 0.47
60 58 0.34
61 27 0.16
ACGTcount: A:0.37, C:0.01, G:0.27, T:0.35
Consensus pattern (61 bp):
AATTTTGGAAAAGTTTAGGGGTGAAAATGAAATTTTAGAAAAATTTAGGGGTGAAATATGT
Found at i:16203649 original size:30 final size:30
Alignment explanation
Indices: 16203405--16203678 Score: 270
Period size: 30 Copynumber: 9.2 Consensus size: 30
16203395 GCAAATGGTA
* ** *
16203405 AATTTTGG-AAACTTTTTGGGTTAAAATGT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGT
*
16203434 AATTTTAGAAAAGTTTTA-GGGTGAAATATG-
1 AATTTTGGAAAAG-TTTAGGGGTGAAA-ATGT
* *
16203464 ATTTTTGGAAAAGTTTAGGGGTGAAAATGA
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGT
*
16203494 AATTTTGGAAAAATTT-GGGGTGAAAATGT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGT
* * *
16203523 GATTTTGAAAAAGTTTAGGGGTGAAAATAT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGT
* * * *
16203553 GATTTTAGAATAAATTTAGGGGTTAAAATGT
1 AATTTTGGAA-AAGTTTAGGGGTGAAAATGT
*
16203584 AATTTTGGAAAAGTTTA-GGGTGGAAATGT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGT
** *
16203613 GGTTTTGGAAAAGTTTAGGGGTAAAAATGT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGT
* * * *
16203643 AATTTTGGAGAAGTTCAGGAGTCAAAATGT
1 AATTTTGGAAAAGTTTAGGGGTGAAAATGT
*
16203673 GATTTT
1 AATTTT
16203679 TAAAGAAAAC
Statistics
Matches: 203, Mismatches: 34, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
29 64 0.32
30 108 0.53
31 31 0.15
ACGTcount: A:0.36, C:0.01, G:0.27, T:0.36
Consensus pattern (30 bp):
AATTTTGGAAAAGTTTAGGGGTGAAAATGT
Found at i:16204654 original size:14 final size:15
Alignment explanation
Indices: 16204624--16204662 Score: 62
Period size: 14 Copynumber: 2.6 Consensus size: 15
16204614 GAAGAATTTT
16204624 TGTCTTCTTTTGAATC
1 TGTCTT-TTTTGAATC
16204640 TGTCTTTTTTG-ATC
1 TGTCTTTTTTGAATC
16204654 TGTCTTTTT
1 TGTCTTTTT
16204663 GTTTAATGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 12 0.52
15 5 0.22
16 6 0.26
ACGTcount: A:0.08, C:0.15, G:0.13, T:0.64
Consensus pattern (15 bp):
TGTCTTTTTTGAATC
Found at i:16205395 original size:18 final size:18
Alignment explanation
Indices: 16205368--16205411 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
16205358 TAATTGGACA
*
16205368 TTAAAATAAATT-TAAAAT
1 TTAAATTAAATTCT-AAAT
16205386 TTAAATTAAATTCTAAAT
1 TTAAATTAAATTCTAAAT
16205404 TTCAAATT
1 TT-AAATT
16205412 TATTTTTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAAATTAAATTCTAAAT
Found at i:16206155 original size:23 final size:23
Alignment explanation
Indices: 16206125--16206178 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
16206115 TGTGGCATCC
* *
16206125 AGTCAGCAGCTTCTAGAAGATCT
1 AGTCAGCAGCTTCCAAAAGATCT
*
16206148 AGTCAGCAGCTTCCAAAAGGTCT
1 AGTCAGCAGCTTCCAAAAGATCT
16206171 AGTCAGCA
1 AGTCAGCA
16206179 AGGATGGACG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (23 bp):
AGTCAGCAGCTTCCAAAAGATCT
Found at i:16212207 original size:58 final size:58
Alignment explanation
Indices: 16212132--16212424 Score: 185
Period size: 59 Copynumber: 5.1 Consensus size: 58
16212122 AAAATACGAC
*
16212132 TTTTGGATGCTCGAGGGTAAAACA-GTGA-TTTTGGACACTTCTA-GAGTAAAATGGTAAT
1 TTTTGGATGCTCGAGGGTAAAA-ATGTAATTTTTGGA-ACTT-TAGGAGTAAAATGGTAAT
* *
16212190 TTTTGGATGTTCGAGGGTAAAAATGTAATTTTTGGAACTTTAGGGGTAAAATGGTAAT
1 TTTTGGATGCTCGAGGGTAAAAATGTAATTTTTGGAACTTTAGGAGTAAAATGGTAAT
* *** ** * *
16212248 TTTTGAAAAAATTAAGGTTAAAAATGGT-ATTTTTGGAAGTTTGAGG-GTAAAATGGTAAT
1 TTTTG-GATGCTCGAGGGTAAAAAT-GTAATTTTTGGAACTTT-AGGAGTAAAATGGTAAT
*** ** * * * *
16212307 TTTTGGAAATTTTAGGGTCAAAAATAG-AATTTTTGGAAATTTGGGGGTAAAAAT-GTAAA
1 TTTTGGATGCTCGAGGGT-AAAAAT-GTAATTTTTGGAACTTTAGGAGT-AAAATGGTAAT
* * * * *
16212366 TTTTGGAAGTTCG-GGG-GAAAATGTAATTTTTGAAAGTTTAAGG-GTTAAAAT-GTAAT
1 TTTTGGATGCTCGAGGGTAAAAATGTAATTTTTGGAACTTT-AGGAG-TAAAATGGTAAT
16212422 TTT
1 TTT
16212425 GGAAAGTTTG
Statistics
Matches: 195, Mismatches: 27, Indels: 28
0.78 0.11 0.11
Matches are distributed among these distances:
55 1 0.01
56 31 0.16
57 6 0.03
58 61 0.31
59 86 0.44
60 10 0.05
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.37
Consensus pattern (58 bp):
TTTTGGATGCTCGAGGGTAAAAATGTAATTTTTGGAACTTTAGGAGTAAAATGGTAAT
Found at i:16212284 original size:88 final size:87
Alignment explanation
Indices: 16212179--16212429 Score: 262
Period size: 88 Copynumber: 2.9 Consensus size: 87
16212169 CTTCTAGAGT
*
16212179 AAAATGGTAATTTTTGGATGTTCGAGGGTAAAAATGTAATTTTTGGAACTTTAGGGGTAAAATGG
1 AAAATGGTAATTTTTGGAAGTTCGAGGGT-AAAATGTAATTTTTGGAACTTTAGGGGTAAAAT-G
*
16212244 TAATTTTTGAAAAAATTAAGGTTA
64 TAATTTTTGAAAAAATTAAGGGTA
* *
16212268 AAAATGGT-ATTTTTGGAAGTTTGAGGGTAAAATGGTAATTTTTGGAAATTTTA-GGGTCAAAAA
1 AAAATGGTAATTTTTGGAAGTTCGAGGGTAAAAT-GTAATTTTTGG-AACTTTAGGGGT--AAAA
* * **
16212331 TAG-AATTTTTG-GAAATTTGGGGGTA
62 T-GTAATTTTTGAAAAAATTAAGGGTA
* * * * *
16212356 AAAAT-GTAAATTTTGGAAGTTCG-GGGGAAAATGTAATTTTTGAAAGTTTAAGGGTTAAAATGT
1 AAAATGGTAATTTTTGGAAGTTCGAGGGTAAAATGTAATTTTTGGAACTTT-AGGGGTAAAATGT
*
16212419 AATTTTGGAAA
65 AATTTTTGAAA
16212430 GTTTGAGGGT
Statistics
Matches: 136, Mismatches: 17, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
84 1 0.01
85 17 0.12
86 12 0.09
87 18 0.13
88 60 0.44
89 22 0.16
90 6 0.04
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (87 bp):
AAAATGGTAATTTTTGGAAGTTCGAGGGTAAAATGTAATTTTTGGAACTTTAGGGGTAAAATGTA
ATTTTTGAAAAAATTAAGGGTA
Found at i:16212370 original size:59 final size:59
Alignment explanation
Indices: 16212177--16212454 Score: 209
Period size: 59 Copynumber: 4.8 Consensus size: 59
16212167 CACTTCTAGA
* ** ** * *
16212177 GTAAAATGGTAATTTTTGGATGTTCGAGGGT-AAAAATGTAATTTTTGGAACTTTAGGG
1 GTAAAATGGTAAATTTTGGAAATTTTAGGGTCAAAAATGTAATTTTTGGAAATTTAAGG
* * ** * * * *
16212235 GTAAAATGGTAATTTTTGAAAAAATTAAGGTTAAAAATGGT-ATTTTTGGAAGTTTGAGG
1 GTAAAATGGTAAATTTTGGAAATTTTAGGGTCAAAAAT-GTAATTTTTGGAAATTTAAGG
* **
16212294 GTAAAATGGTAATTTTTGGAAATTTTAGGGTCAAAAATAG-AATTTTTGGAAATTTGGGG
1 GTAAAATGGTAAATTTTGGAAATTTTAGGGTCAAAAAT-GTAATTTTTGGAAATTTAAGG
* * **
16212353 GTAAAAAT-GTAAATTTTGG-AA-GTTCGGG-GGAAAATGTAATTTTT-GAAAGTTTAAGG
1 GT-AAAATGGTAAATTTTGGAAATTTTAGGGTCAAAAATGTAATTTTTGGAAA-TTTAAGG
* *
16212409 GTTAAAAT-GT-AATTTTGGAAAGTTTGAGGGTC-AAAATGTATTTTTT
1 G-TAAAATGGTAAATTTTGGAAA-TTTTAGGGTCAAAAATGTAATTTTT
16212455 AAGAAGATTG
Statistics
Matches: 178, Mismatches: 31, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
55 13 0.07
56 27 0.15
57 6 0.03
58 42 0.24
59 83 0.47
60 7 0.04
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.38
Consensus pattern (59 bp):
GTAAAATGGTAAATTTTGGAAATTTTAGGGTCAAAAATGTAATTTTTGGAAATTTAAGG
Found at i:16212468 original size:30 final size:29
Alignment explanation
Indices: 16212179--16212468 Score: 193
Period size: 29 Copynumber: 9.9 Consensus size: 29
16212169 CTTCTAGAGT
* * * *
16212179 AAAATGGTAATTTTTGGATGTTCGAGGGTA
1 AAAAT-GTAATTTTTGAAAGTTTGAGGGTC
* *
16212209 AAAATGTAATTTTTGGAACTTT-AGGGGT-
1 AAAATGTAATTTTTGAAAGTTTGA-GGGTC
** * * *
16212237 AAAATGGTAATTTTTGAAAAAATTAAGGTTA
1 AAAAT-GTAATTTTTG-AAAGTTTGAGGGTC
*
16212268 AAAATGGT-ATTTTTGGAAGTTTGAGGGT-
1 AAAAT-GTAATTTTTGAAAGTTTGAGGGTC
*
16212296 AAAATGGTAATTTTTGGAAA-TTTTAGGGTC
1 AAAAT-GTAATTTTT-GAAAGTTTGAGGGTC
* *
16212326 AAAAATAG-AATTTTTGGAAA-TTTGGGGGTA
1 -AAAAT-GTAATTTTT-GAAAGTTTGAGGGTC
* * * *
16212356 AAAATGTAAATTTTGGAAGTTCG-GGG-G
1 AAAATGTAATTTTTGAAAGTTTGAGGGTC
* *
16212383 AAAATGTAATTTTTGAAAGTTTAAGGGTT
1 AAAATGTAATTTTTGAAAGTTTGAGGGTC
*
16212412 AAAATGTAATTTTGGAAAGTTTGAGGGTC
1 AAAATGTAATTTTTGAAAGTTTGAGGGTC
* * *
16212441 AAAATGTATTTTTTAAGAAGATTGAGGG
1 AAAATGTAATTTTTGA-AAGTTTGAGGG
16212469 CTAAGATATG
Statistics
Matches: 212, Mismatches: 34, Indels: 28
0.77 0.12 0.10
Matches are distributed among these distances:
27 19 0.09
28 24 0.11
29 103 0.49
30 51 0.24
31 15 0.07
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.37
Consensus pattern (29 bp):
AAAATGTAATTTTTGAAAGTTTGAGGGTC
Found at i:16212652 original size:33 final size:32
Alignment explanation
Indices: 16212611--16212676 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 32
16212601 TTGAAAATTA
* *
16212611 ATTAAAAATATGAAAAGGACTAAAT-TGTAAAT
1 ATTAAAAATATG-AAAGGACCAAATGGGTAAAT
16212643 ATTAGAAAATATGAAAGGACCAAATGGGTAAAT
1 ATTA-AAAATATGAAAGGACCAAATGGGTAAAT
16212676 A
1 A
16212677 ACCTAAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.55, C:0.05, G:0.17, T:0.24
Consensus pattern (32 bp):
ATTAAAAATATGAAAGGACCAAATGGGTAAAT
Found at i:16225470 original size:26 final size:25
Alignment explanation
Indices: 16225426--16225490 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
16225416 TCTAAATTCT
* * *
16225426 AGCTCGATAAGAGTGTATTCTGTCTG
1 AGCTCG-TAAGAGCGTATTCTATCTA
16225452 AGCTCGTAAGAGCGTTATTCTATCTA
1 AGCTCGTAAGAGCG-TATTCTATCTA
*
16225478 AGCTCATAAGAGC
1 AGCTCGTAAGAGC
16225491 TAAACTCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 7 0.21
26 27 0.79
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (25 bp):
AGCTCGTAAGAGCGTATTCTATCTA
Found at i:16225499 original size:26 final size:26
Alignment explanation
Indices: 16225470--16225524 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
16225460 AGAGCGTTAT
16225470 TCTATCTAAGCTCATAAGAGCTAAAC
1 TCTATCTAAGCTCATAAGAGCTAAAC
* ** * *
16225496 TCTATTTGGGCTCGTAAGAGTTAAAC
1 TCTATCTAAGCTCATAAGAGCTAAAC
16225522 TCT
1 TCT
16225525 GCTTGGGCTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (26 bp):
TCTATCTAAGCTCATAAGAGCTAAAC
Found at i:16225530 original size:26 final size:26
Alignment explanation
Indices: 16225479--16225546 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
16225469 TTCTATCTAA
*
16225479 GCTCATAAGAGCTAAACTCTATTTGG
1 GCTCATAAGAGCTAAACTCTACTTGG
* * *
16225505 GCTCGTAAGAGTTAAACTCTGCTTGG
1 GCTCATAAGAGCTAAACTCTACTTGG
*
16225531 GCTCATATGAGCTAAA
1 GCTCATAAGAGCTAAA
16225547 TTTCTAGAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
GCTCATAAGAGCTAAACTCTACTTGG
Found at i:16230645 original size:168 final size:169
Alignment explanation
Indices: 16230313--16230646 Score: 410
Period size: 168 Copynumber: 2.0 Consensus size: 169
16230303 GTAAATGAAA
* * * * * *
16230313 TTGTAAGGATAAGTAAATATATATTATATGAATCTTAGATTTAATTTAAATGATTCATTCACTCA
1 TTGTAAGGATAAGAAAACATATATCATATGAATCCTAGACTGAATTTAAATGATTCATTCACTCA
* * * * * * * * *
16230378 ATTTAAAATCTAAGACTCTAATAAAGTAAACGATGTTAATTAATTTTTAAATTATGAGTTGATTG
66 ATTTAAAATATAAGACTCCAATAAAGCAAACAATATTAATTAAATTTTAAATTATAAGTTAATAG
16230443 AATACCATACCTCATTATTGATAGTACAAATTTTAAAAG
131 AATACCATACCTCATTATTGATAGTACAAATTTTAAAAG
16230482 TTGTAAGGATAA-AAAACATATATCATATGAATCCTAGACTGAATTTAAATGATTCATTCACTCA
1 TTGTAAGGATAAGAAAACATATATCATATGAATCCTAGACTGAATTTAAATGATTCATTCACTCA
* * * *
16230546 TTTTAAAATATAAGACTCCAA-AAAGGCAAATAATATTACTTAAATTTTCAATTATAAGTTAACT
66 ATTTAAAATATAAGACTCCAATAAA-GCAAACAATATTAATTAAATTTTAAATTATAAGTTAA-T
16230610 AGATAATA-CA-ACCTCATTGATT-ATAGTAC-AATTTTAA
129 AG--AATACCATACCTCATT-ATTGATAGTACAAATTTTAA
16230647 TGAATATCGA
Statistics
Matches: 141, Mismatches: 19, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
167 3 0.02
168 100 0.71
169 29 0.21
170 5 0.04
171 4 0.03
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.37
Consensus pattern (169 bp):
TTGTAAGGATAAGAAAACATATATCATATGAATCCTAGACTGAATTTAAATGATTCATTCACTCA
ATTTAAAATATAAGACTCCAATAAAGCAAACAATATTAATTAAATTTTAAATTATAAGTTAATAG
AATACCATACCTCATTATTGATAGTACAAATTTTAAAAG
Found at i:16232203 original size:14 final size:14
Alignment explanation
Indices: 16232186--16232216 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
16232176 CTTTGATATT
*
16232186 TTTTTTGTGTTAAG
1 TTTTTTGTGTCAAG
16232200 TTTTTTGTGTCAAG
1 TTTTTTGTGTCAAG
16232214 TTT
1 TTT
16232217 GAGTTCTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.03, G:0.19, T:0.65
Consensus pattern (14 bp):
TTTTTTGTGTCAAG
Found at i:16238358 original size:23 final size:25
Alignment explanation
Indices: 16238332--16238377 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
16238322 CCAATTAGGG
16238332 AATTAT-TGTTTAG-ATTTAATTCA
1 AATTATCTGTTTAGAATTTAATTCA
*
16238355 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
16238378 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCA
Found at i:16242381 original size:22 final size:22
Alignment explanation
Indices: 16242326--16242382 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
16242316 CAAAAAAAAA
16242326 TTAGTTTA-TTTATTTTCATTT
1 TTAGTTTATTTTATTTTCATTT
16242347 TTAGTTTAGTTTTATTTT-ATTT
1 TTAGTTTA-TTTTATTTTCATTT
*
16242369 TTAATTTTATTTTA
1 TT-AGTTTATTTTA
16242383 ATTATGCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
21 8 0.25
22 11 0.34
23 13 0.41
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (22 bp):
TTAGTTTATTTTATTTTCATTT
Found at i:16243352 original size:18 final size:18
Alignment explanation
Indices: 16243331--16243370 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
16243321 AAAAAAGCTG
16243331 AAAAGAAAAATTG-GAAAA
1 AAAAG-AAAATTGAGAAAA
16243349 AAAAGAAAATTGAGAAAA
1 AAAAGAAAATTGAGAAAA
16243367 AAAA
1 AAAA
16243371 AGAGAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAAGAAAATTGAGAAAA
Found at i:16244426 original size:23 final size:25
Alignment explanation
Indices: 16244400--16244445 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
16244390 CCAATTAGGG
16244400 AATTAT-TGTTTAG-ATTTAATTCA
1 AATTATCTGTTTAGAATTTAATTCA
*
16244423 AATTATCTTTTTAGAATTTAATT
1 AATTATCTGTTTAGAATTTAATT
16244446 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (25 bp):
AATTATCTGTTTAGAATTTAATTCA
Found at i:16246605 original size:581 final size:581
Alignment explanation
Indices: 16245528--16246614 Score: 1543
Period size: 581 Copynumber: 1.9 Consensus size: 581
16245518 GCTACCTGTA
* * * * *
16245528 AAAGTGCCAATTTTATATATGTTTCCAGAATATCCTTATAAATAAATAGAGAATAATTGCATTGC
1 AAAGTACCAAGTTTATATATGTTTCAAGAATATCCATACAAATAAATAGAGAATAATTGCATTGC
* * * *
16245593 AATATACAGAAATATTAAGAGGAAAAAATAAATAAAAATAGAGGTGAAGACAAAATCGAGGTTGA
66 AACATACAGAAATATTAAGAGGAAAAAATAAATAAAAAGAAAGGTGAAGACAAAATCGAGGCTGA
* * * *
16245658 TACATTTAAAGAGTCTGAAAATAAAAAGTACCCAATTGTTTTGAGGCCAACCTTGATACCTACTT
131 CACATTTAAAGAGTCTGAAAATAAAAAGTACCCAATCGTTTAGAGGCCAACCATGATACCTACTT
* * * * *
16245723 CCTACCGTATTTGTCCATTGTTTCCATTGTAATTATGTCTCTAATCTTTCATTGGAAAGTTCGCT
196 CCTACCATATTTGTCCATTGTTTCAATTGTAATTATGTCTCTAACCTATCATTGGAAAGTTCACT
** * * * *
16245788 TAAATATCTTTAAAAACCTGCATTTCTCTTTTATTTTTGAACATTATATATCACTTGTTTTGCAT
261 TAAATATCTCCAAAAACATGCATTTCTCTTTTATTTTTGAACATTATATATAACTTATTATGCAT
* * *
16245853 TGTCAAATTTCAACACAATTCAAGTTTCAGATTCATGCCGAGTGAAAAAGGGGAGAAACAAAACA
326 TATCAAATTTCAACACAATTCAAGTTTCAGATACATACCGAGTGAAAAAGGGGAGAAACAAAACA
* * * **
16245918 TAAAAAGAGTTTGGAGGTGCTTATACATTCGTGTCTATTTCCCTTAAACGCTTCACTCTTTGTTT
391 TAAAAAGAGTTTGGAGGTGCTTATACAATCGTGTATATTTCCCTTAAACGCTTCACACCATGTTT
* * * *
16245983 TCATTCTCACTTTTGCTATAAACCATTTTTTTATTTTCTTTTGTGTCAAGTTTGAGTTCTTTAAC
456 TCATCCTCACTTTCGATATAAACCATTTTTTTATCTTCTTTTGTGTCAAGTTTGAGTTCTTTAAC
16246048 GAATTTAACCATAAACAAATTGTTTGAAAAAACCTAATGAAGAAACTAATGGCTGACAGTG
521 GAATTTAACCATAAACAAATTGTTTGAAAAAACCTAATGAAGAAACTAATGGCTGACAGTG
* *
16246109 AAAGTACCAAGTTTCTATATGTTTCAAGAATATCCATACAAATAAATTGAGAATAATTGCATTGC
1 AAAGTACCAAGTTTATATATGTTTCAAGAATATCCATACAAATAAATAGAGAATAATTGCATTGC
* * * * **
16246174 AACATATAGCAATATTGAGGGGGGAAAATAAATAAAAAGAAAGGTGAAGACAAAATCGAGGCTGA
66 AACATACAGAAATATTAAGAGGAAAAAATAAATAAAAAGAAAGGTGAAGACAAAATCGAGGCTGA
* ** * * * *
16246239 CCCATTTAAAGAGTCTGAAAATGCAGAGTATCCAACTCG-TTAGAGGCCAACCATGGTACCTGCT
131 CACATTTAAAGAGTCTGAAAATAAAAAGTACCCAA-TCGTTTAGAGGCCAACCATGATACCTACT
* *
16246303 TCCTACCATATTTGTTCGTTGTTTCAATTGTAATTAT-TCTCTAACCTATCATTGGAAAGTTCAC
195 TCCTACCATATTTGTCCATTGTTTCAATTGTAATTATGTCTCTAACCTATCATTGGAAAGTTCAC
* *
16246367 TTAAATAT-TCCAAAAATATGCGTTTCTCTTTTATTTTTGAACATTATATATAACTTATTATGCA
260 TTAAATATCTCCAAAAACATGCATTTCTCTTTTATTTTTGAACATTATATATAACTTATTATGCA
* * * *
16246431 TTATCAAATTTCACCACAATTGAAGTTTTAGATACGTACCGAGTGAAAAAAGGGG-GAAACAAAA
325 TTATCAAATTTCAACACAATTCAAGTTTCAGATACATACCGAGTG-AAAAAGGGGAGAAACAAAA
* *
16246495 CATAAAAAGAGTTTGGTGGTGCTTATACAATCGTGTATATTTCCCTTAAAGGCTTCACACCATGT
389 CATAAAAAGAGTTTGGAGGTGCTTATACAATCGTGTATATTTCCCTTAAACGCTTCACACCATGT
* *
16246560 TTTTATCCTCACTTTCGATATAAACCCTTTTCTTTGATCTTCTTTTGTGTCAAGT
454 TTTCATCCTCACTTTCGATATAAACCATTTT-TTT-ATCTTCTTTTGTGTCAAGT
16246615 CTTTTGTGTC
Statistics
Matches: 439, Mismatches: 63, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
579 179 0.41
580 44 0.10
581 214 0.49
582 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (581 bp):
AAAGTACCAAGTTTATATATGTTTCAAGAATATCCATACAAATAAATAGAGAATAATTGCATTGC
AACATACAGAAATATTAAGAGGAAAAAATAAATAAAAAGAAAGGTGAAGACAAAATCGAGGCTGA
CACATTTAAAGAGTCTGAAAATAAAAAGTACCCAATCGTTTAGAGGCCAACCATGATACCTACTT
CCTACCATATTTGTCCATTGTTTCAATTGTAATTATGTCTCTAACCTATCATTGGAAAGTTCACT
TAAATATCTCCAAAAACATGCATTTCTCTTTTATTTTTGAACATTATATATAACTTATTATGCAT
TATCAAATTTCAACACAATTCAAGTTTCAGATACATACCGAGTGAAAAAGGGGAGAAACAAAACA
TAAAAAGAGTTTGGAGGTGCTTATACAATCGTGTATATTTCCCTTAAACGCTTCACACCATGTTT
TCATCCTCACTTTCGATATAAACCATTTTTTTATCTTCTTTTGTGTCAAGTTTGAGTTCTTTAAC
GAATTTAACCATAAACAAATTGTTTGAAAAAACCTAATGAAGAAACTAATGGCTGACAGTG
Found at i:16246619 original size:14 final size:14
Alignment explanation
Indices: 16246600--16246628 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16246590 TCTTTGATCT
16246600 TCTTTTGTGTCAAG
1 TCTTTTGTGTCAAG
16246614 TCTTTTGTGTCAAG
1 TCTTTTGTGTCAAG
16246628 T
1 T
16246629 TTGAGTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.52
Consensus pattern (14 bp):
TCTTTTGTGTCAAG
Found at i:16247640 original size:14 final size:14
Alignment explanation
Indices: 16247621--16247647 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16247611 TTAAATGAAT
16247621 TCTTTTGTGTCAAG
1 TCTTTTGTGTCAAG
16247635 TCTTTTGTGTCAA
1 TCTTTTGTGTCAA
16247648 TTTTGAGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.19, T:0.52
Consensus pattern (14 bp):
TCTTTTGTGTCAAG
Found at i:16252431 original size:123 final size:124
Alignment explanation
Indices: 16252278--16252724 Score: 638
Period size: 123 Copynumber: 3.6 Consensus size: 124
16252268 ATATAAAACT
* * *
16252278 ATATAATATTTTTAATAAACCTTCTGTATATTTCTGTAAAGAAATAATTTCATTTTAATATGAGA
1 ATATAATAGTTTTAATAAACCTTCTATATATTTCTCTAAAGAAATAATTTCATTTTAATATGAGA
* *
16252343 TGTTAAATAAAA-AGAAATTGAATATTAAAAACATGGAAGTTAATATCCTTTTCAAAAGG
66 TATTAAATAAAAGA-AAATTGAATATTAAAAACATGGAAGTTAATATCCTTTTCGAAAGG
*
16252402 ATATAAT-GTTTTAATAAACTTTCTATATATTTCTCTAAA-AGAAT-ATTTCCATTTTAATATGA
1 ATATAATAGTTTTAATAAACCTTCTATATATTTCTCTAAAGA-AATAATTT-CATTTTAATATGA
* * * *
16252464 GATATTAAATAAAAGAAAATTTAATATTAAAAACATGGAAGTTAATATCATTTTGGAAAGT
64 GATATTAAATAAAAGAAAATTGAATATTAAAAACATGGAAGTTAATATCCTTTTCGAAAGG
* * *
16252525 ATATAAT-GTTTTAATAAACCTTCCATATATTTCTCTAAAGGAATATTTTCATTTTAATATGAGA
1 ATATAATAGTTTTAATAAACCTTCTATATATTTCTCTAAAGAAATAATTTCATTTTAATATGAGA
*
16252589 TATTAAATAAAAGAAAATTGAATAGT-AAAACATGGAAGTTAATATCCTTTTCGAAAGG
66 TATTAAATAAAAGAAAATTGAATATTAAAAACATGGAAGTTAATATCCTTTTCGAAAGG
* * * * *
16252647 ATATAATGGTTTTAATAAACCTT-TCATATATTTTTATAAAGGAATAATTTCGTTTTAATATGAG
1 ATATAATAGTTTTAATAAACCTTCT-ATATATTTCTCTAAAGAAATAATTTCATTTTAATATGAG
16252711 ATATTAAATAAAAG
65 ATATTAAATAAAAG
16252725 GAAAGATAGC
Statistics
Matches: 292, Mismatches: 24, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
122 41 0.14
123 240 0.82
124 11 0.04
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (124 bp):
ATATAATAGTTTTAATAAACCTTCTATATATTTCTCTAAAGAAATAATTTCATTTTAATATGAGA
TATTAAATAAAAGAAAATTGAATATTAAAAACATGGAAGTTAATATCCTTTTCGAAAGG
Found at i:16252721 original size:246 final size:247
Alignment explanation
Indices: 16252277--16252724 Score: 708
Period size: 246 Copynumber: 1.8 Consensus size: 247
16252267 AATATAAAAC
* ** *
16252277 TATATAATATTTTTAATAAACCTTCTGTATATTTCTGTAAAGAAATAATTTCATTTTAATATGAG
1 TATATAATAGTTTTAATAAACCTTCCATATATTTCTCTAAAGAAATAATTTCATTTTAATATGAG
* *
16252342 ATGTTAAATAAAAAGAAATTGAATATTAAAAACATGGAAGTTAATATCCTTTTCAAAAGGATATA
66 ATATTAAATAAAAAGAAATTGAATAGTAAAAACATGGAAGTTAATATCCTTTTCAAAAGGATATA
*
16252407 ATGTTTTAATAAACTTTCTATATATTTCTCTAAAAGAATATTTCCATTTTAATATGAGATATTAA
131 ATGTTTTAATAAACTTTCTATATATTTCTATAAAAGAATATTTCCATTTTAATATGAGATATTAA
16252472 ATAAAAGAAAATTTAATATTAAAAACATGGAAGTTAATATCATTTTGGAAAG
196 ATAAAAGAAAATTTAATATTAAAAACATGGAAGTTAATATCATTTTGGAAAG
* *
16252524 TATATAAT-GTTTTAATAAACCTTCCATATATTTCTCTAAAGGAATATTTTCATTTTAATATGAG
1 TATATAATAGTTTTAATAAACCTTCCATATATTTCTCTAAAGAAATAATTTCATTTTAATATGAG
*
16252588 ATATTAAAT-AAAAGAAAATTGAATAGT-AAAACATGGAAGTTAATATCCTTTTCGAAAGGATAT
66 ATATTAAATAAAAAG-AAATTGAATAGTAAAAACATGGAAGTTAATATCCTTTTCAAAAGGATAT
* * *
16252651 AATGGTTTTAATAAACCTTTC-ATATATTTTTATAAAGGAATAATTT-CGTTTTAATATGAGATA
130 AAT-GTTTTAATAAA-CTTTCTATATATTTCTATAAAAGAAT-ATTTCCATTTTAATATGAGATA
16252714 TTAAATAAAAG
192 TTAAATAAAAG
16252725 GAAAGATAGC
Statistics
Matches: 184, Mismatches: 13, Indels: 9
0.89 0.06 0.04
Matches are distributed among these distances:
245 43 0.23
246 124 0.67
247 17 0.09
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (247 bp):
TATATAATAGTTTTAATAAACCTTCCATATATTTCTCTAAAGAAATAATTTCATTTTAATATGAG
ATATTAAATAAAAAGAAATTGAATAGTAAAAACATGGAAGTTAATATCCTTTTCAAAAGGATATA
ATGTTTTAATAAACTTTCTATATATTTCTATAAAAGAATATTTCCATTTTAATATGAGATATTAA
ATAAAAGAAAATTTAATATTAAAAACATGGAAGTTAATATCATTTTGGAAAG
Found at i:16257754 original size:16 final size:16
Alignment explanation
Indices: 16257733--16257778 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 16
16257723 GTTTTCTTTG
*
16257733 GTCTTTTTTGTGTCAA
1 GTCTTTTTTCTGTCAA
16257749 GTC--TTTTCTGTCAA
1 GTCTTTTTTCTGTCAA
16257763 GTC--TTTTCTGTCAA
1 GTCTTTTTTCTGTCAA
16257777 GT
1 GT
16257779 TTGCGTTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 26 0.90
16 3 0.10
ACGTcount: A:0.13, C:0.17, G:0.17, T:0.52
Consensus pattern (16 bp):
GTCTTTTTTCTGTCAA
Found at i:16257755 original size:14 final size:14
Alignment explanation
Indices: 16257738--16257778 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
16257728 CTTTGGTCTT
*
16257738 TTTTGTGTCAAGTC
1 TTTTCTGTCAAGTC
16257752 TTTTCTGTCAAGTC
1 TTTTCTGTCAAGTC
16257766 TTTTCTGTCAAGT
1 TTTTCTGTCAAGT
16257779 TTGCGTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.15, C:0.17, G:0.17, T:0.51
Consensus pattern (14 bp):
TTTTCTGTCAAGTC
Found at i:16258072 original size:605 final size:607
Alignment explanation
Indices: 16257230--16258371 Score: 1462
Period size: 605 Copynumber: 1.9 Consensus size: 607
16257220 TAAATCTTGT
* * *
16257230 GAAGAAATTGACGGCTCATAGTAAAAGTACCAAGTTTCTATATGATTCTAGAATACCATATAAAT
1 GAAGAAACTGACGGCTCACAGTAAAAGTACCAAGTTTCTATATGATTCCAGAATACCATATAAAT
* *
16257295 AAATAGAGTAATTCCATTGCAACATATAGCACTATTGAGTGGAAAAATAAATAAAAAGAGAGGTA
66 AAATAGAGTAATTCCATTGCAACATATAGCAATACTGAGTGGAAAAATAAATAAAAAGAGAGGTA
* ** * **
16257360 AATACAAAATCGAGGCTGACCCATTTAAAGAGTCTGGCAATGCAGAGTATCCAATTTTTTAGAAG
131 AAGACAAAATCGAGGCTGACCCATTTAAAGAGTCTGAAAATGCAAAGTATCCAATTGGTTAGAAG
** * * * *
16257425 CTTACTATGATAACTGCTTCCTACCATATTTGTCAGTTGTTTCCATTGAAATTATGACTCTAATC
196 CCAACAATGATAACTGCTCCCCACCATATTTGTCAGTTGTTTCCATTGAAATAATGACTCTAATC
* * * *
16257490 TTTCATTGGAATGTTCGCTTAAATATCTCCAAAAACATGT-GTTTCTCTTTTATTTTTGAACATT
261 TTTCATTAGAAAGTTCCCTTAAATATCTCCAAAAACAT-TAATTTCTCTTTTATTTTTGAACATT
** *
16257554 ATATA-TGACTCGTTTTGCAATGTTAAATTTCACCACAATTCAAG-ATTC-A-A-ATATGGAGTG
325 ATATACT-ACTCGTTTTGCAATGCCAAATTTCACCACAATTCAAGTATTCTATACACATGGAGTG
* *
16257614 AAAAAAGGGTGGGAACAAAA-CATGAAAAGAGTTTGGGGTGCTTTTACAATCATGTATATTTCAC
389 AAAAAAGGGT-GGAACAAAATCATAAAAAGAGTTTGGGGTGCTTATACAATCATGTATATTTCAC
** * * * *
16257678 TTAAAGGCTTCACTCCTTATT-TAATCCTCACTCTCGATATAAATTGTTTTCTTTGGTCTT-TTT
453 AAAAAGGCTTCACTCCCTATTCTAATCCTCACTCTCGATATAAAATATTTTCTTT-ATCTTCTTT
*
16257741 TGTGTCAAGTCTTTTCTGTCAAGTCTTTTCTGTCAAGTTTGCGTTCTTTAATCAATTTATACATT
517 TGTGTCAAGTATTTTCTGTCAAGTCTTTTCTGTCAAGTTTGCGTTCTTTAATCAATTTATACATT
16257806 AGAAAATTGTTTAAAAGAAGTTTCAA
582 AGAAAATTGTTTAAAAGAAGTTTCAA
* * ** *
16257832 GAAGAAACTGATGGCTCACAGTAAAAGTGCTGAGTTTCTATATGTTTCCAGAATATCCATATAAA
1 GAAGAAACTGACGGCTCACAGTAAAAGTACCAAGTTTCTATATGATTCCAGAATA-CCATATAAA
* * * *
16257897 TAAATAGAGAGTAATTGCATTGCAATATATAGTAATACTGA-TGGGGAAAATAAATAAAAAGAGA
65 TAAAT--AGAGTAATTCCATTGCAACATATAGCAATACTGAGT-GGAAAAATAAATAAAAAGAGA
* *
16257961 GGTGAAGACAAAATCGAGGCTGGCCCATTTAAAGAGTCTGAAAATGCAAAGTATCCAATTGGTTA
127 GGTAAAGACAAAATCGAGGCTGACCCATTTAAAGAGTCTGAAAATGCAAAGTATCCAATTGGTTA
* **
16258026 -AAGGCCAACAATGATACCTGCTCCCCACCATATTTGTCTA-TTGTTTCCATTTTAATAATGACT
192 GAA-GCCAACAATGATAACTGCTCCCCACCATATTTGTC-AGTTGTTTCCATTGAAATAATGACT
* * * * * *
16258089 TTAATCTTTCATTAGAAAGTTCCCTTAAATATTTTCAAAAACCTTAATTTTTGTTTTATTTTTGA
255 CTAATCTTTCATTAGAAAGTTCCCTTAAATATCTCCAAAAACATTAATTTCTCTTTTATTTTTGA
* * * * * * *
16258154 ACATTATATACTAGTTGTTTTGCATTGCCAACTTTCACCACAATTCAAGTTTTCTATACGCATTG
320 ACATTATATACTACTCGTTTTGCAATGCCAAATTTCACCACAATTCAAGTATTCTATACACATGG
* * * *
16258219 AGTGAATAAAGGGTGGAAGAAAATCATAAAAAGAGTTTGGGGTGCTTATACAATCATTTCTATTT
385 AGTGAAAAAAGGGTGGAACAAAATCATAAAAAGAGTTTGGGGTGCTTATACAATCATGTATATTT
* * * * **
16258284 CCCAAAAAGGCTTCGCTCCCTATTCTCATCCTCACTTTTTATATAAAATATTTTCTTTATCTTCT
450 CACAAAAAGGCTTCACTCCCTATTCTAATCCTCACTCTCGATATAAAATATTTTCTTTATCTTCT
* *
16258349 TTTGTTTCAAGTATTTTGTGTCA
515 TTTGTGTCAAGTATTTTCTGTCA
16258372 CTTCTGAAAA
Statistics
Matches: 453, Mismatches: 72, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
602 47 0.10
603 14 0.03
604 4 0.01
605 249 0.55
606 5 0.01
607 1 0.00
608 9 0.02
609 76 0.17
610 48 0.11
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (607 bp):
GAAGAAACTGACGGCTCACAGTAAAAGTACCAAGTTTCTATATGATTCCAGAATACCATATAAAT
AAATAGAGTAATTCCATTGCAACATATAGCAATACTGAGTGGAAAAATAAATAAAAAGAGAGGTA
AAGACAAAATCGAGGCTGACCCATTTAAAGAGTCTGAAAATGCAAAGTATCCAATTGGTTAGAAG
CCAACAATGATAACTGCTCCCCACCATATTTGTCAGTTGTTTCCATTGAAATAATGACTCTAATC
TTTCATTAGAAAGTTCCCTTAAATATCTCCAAAAACATTAATTTCTCTTTTATTTTTGAACATTA
TATACTACTCGTTTTGCAATGCCAAATTTCACCACAATTCAAGTATTCTATACACATGGAGTGAA
AAAAGGGTGGAACAAAATCATAAAAAGAGTTTGGGGTGCTTATACAATCATGTATATTTCACAAA
AAGGCTTCACTCCCTATTCTAATCCTCACTCTCGATATAAAATATTTTCTTTATCTTCTTTTGTG
TCAAGTATTTTCTGTCAAGTCTTTTCTGTCAAGTTTGCGTTCTTTAATCAATTTATACATTAGAA
AATTGTTTAAAAGAAGTTTCAA
Found at i:16258725 original size:377 final size:377
Alignment explanation
Indices: 16257997--16258737 Score: 820
Period size: 377 Copynumber: 2.0 Consensus size: 377
16257987 ATTTAAAGAG
* * *
16257997 TCTGAAAATGCAAAGTATCCAATTGGTTAAAGGCCAACAATGATACCTGCTCCCCACCATATTTG
1 TCTGAAAATACAAAGAATCCAATTGGTTAAAGGCCAACAATGATAACTGCTCCCCACCATATTTG
* * * * **
16258062 TCTATTGTTTCCATTTTAATAATGACTTTAATCTTTCATTAGAAAGTTCCCTTAAATATTTTCAA
66 TCTATTGTTTCCACTGTAATAATGACTCTAATCTTTCATTAGAAAGTTCCCTTAAATAGTCACAA
* * * * * *
16258127 AAACCTTAATTTTTGTTTTATTTTTGAACATTATATACTAGTTGTTTTGCATTGCCAACTTTCAC
131 AAAACATAATGTTTCTTTTATTTTTGAACATTATATACTACTTGTTTTGCATTGCCAAATTTCAC
* ** * *
16258192 CACAATTCAAGTTTTCTATACGCATTGAGTGAATAAAGGGTGGAAGAAAATCATAAAAAGAGTTT
196 CACAATTCAAGTTTTCAATACGCACCGAGTGAATAAAGGGGGGAAGAAAAACATAAAAAGAGTTT
* **** * *
16258257 GGGGTGCTTATACAATCATTTCTATTTCCCAAAAAGGCTTCGCTCCCTATTCTCATCCTCACTTT
261 CGAAAACATATACAATCATTTCTATTTCCCAAAAAGGCTTCACTCCCTATTCTCATCCTCACTTT
* * * *
16258322 TTATATAAAATATTTTCTTTATCTTCTTTTGTTTCAAGTATTTTGTGTCACT
326 TGATATAAAACACTTTCTTTATCTTCTTTTGTGTCAAGTATTTTGTGTCACT
* * * *
16258374 TCTGAAAATACAGAGAATCCAATTGGTTAGAGGCCAACCAA-GATAACTGCTTCCTACCATATTT
1 TCTGAAAATACAAAGAATCCAATTGGTTAAAGGCCAA-CAATGATAACTGCTCCCCACCATATTT
* * * * * *
16258438 GTTTATTGTTTCCACTGTAATTATGACTCTAATTTTTCATTGGAATGTTCGCTTAAAT-GTCACA
65 GTCTATTGTTTCCACTGTAATAATGACTCTAATCTTTCATTAGAAAGTTCCCTTAAATAGTCACA
* *
16258502 AAAAACAT-GTGTTTCTCTTTACTTTTT-AACATT-TATA-TCACTTGTTTTGCATTGTCAAATT
130 AAAAACATAATGTTTCT-TTTA-TTTTTGAACATTATATACT-ACTTGTTTTGCATTGCCAAATT
* * *
16258563 TCACCATAATAT-ACG-TTTCAAATACGCGCCGAGTGAATAAAGGGGGGAA-ACAAAACATAAAA
192 TCACCACAAT-TCAAGTTTTC-AATACGCACCGAGTGAATAAAGGGGGGAAGA-AAAACATAAAA
** * * * *
16258625 AGAGTTTACGAAAACATATACAAT-AGTGTT-TATTTCCCTTAAAGGCTTCATTCCTTGTTTTCA
254 AGAGTTT-CGAAAACATATACAATCA-T-TTCTATTTCCCAAAAAGGCTTCACTCCCTATTCTCA
* *
16258688 TCCTCACTTTTGATATAAACCCCTTTCTTTGATCTTCTTTTGTGTCAAGT
316 TCCTCACTTTTGATATAAAACACTTTCTTT-ATCTTCTTTTGTGTCAAGT
16258738 TTAAGTTCTT
Statistics
Matches: 299, Mismatches: 54, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
374 6 0.02
375 81 0.27
376 82 0.27
377 127 0.42
378 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (377 bp):
TCTGAAAATACAAAGAATCCAATTGGTTAAAGGCCAACAATGATAACTGCTCCCCACCATATTTG
TCTATTGTTTCCACTGTAATAATGACTCTAATCTTTCATTAGAAAGTTCCCTTAAATAGTCACAA
AAAACATAATGTTTCTTTTATTTTTGAACATTATATACTACTTGTTTTGCATTGCCAAATTTCAC
CACAATTCAAGTTTTCAATACGCACCGAGTGAATAAAGGGGGGAAGAAAAACATAAAAAGAGTTT
CGAAAACATATACAATCATTTCTATTTCCCAAAAAGGCTTCACTCCCTATTCTCATCCTCACTTT
TGATATAAAACACTTTCTTTATCTTCTTTTGTGTCAAGTATTTTGTGTCACT
Found at i:16259774 original size:374 final size:365
Alignment explanation
Indices: 16259006--16260033 Score: 1170
Period size: 374 Copynumber: 2.8 Consensus size: 365
16258996 ATACATGTTT
* * * * *
16259006 CCTACCATATTTGTCTGTTCTTTCCATTGTAAGTATGACTCTAATCTTTCATTGGAAATTTCACT
1 CCTACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATGGAAAGTTCGCT
* *
16259071 TAAATATCTTCGAAAATAT-TAGTTTTTCTTTTATTTTTTTTAACATTATATACCACTTGTTTTG
66 TAAATATCTT-GAAAATATGT-G-TTTTCTTTTA---TTTTTAACATTATTTATCACTTGTTTTG
* * * ** * * *
16259135 TGTTGTCGACTTTCACCATAA-TTCAAGTTTCCTATACGAGTCGAGAGAAAAAAGGATGGAAA-A
125 TGTTGTCAAATTTCACCACAACTT-AAGTTTCAGATACGCG-CGAGTGAAAAAAGG-GGGAAACA
* * **
16259198 AAACATAAAAAGAGTTTTGGGGTGTTTATACAATCATGTCTATTTCTCTTAAAGGTTTTGCTCCC
187 AAACATAAAAAGAG-TTTGGGGTGCTTATACAATCATGTCTATTTCT-TTAAAGGCTTCACTCCC
* *
16259263 TATTTTCAACCTCACTTTCGATATAAATTGTTTTCTTTGTTTGTTTCAAGTATTTTATGTCAAGT
250 TATTTTCAACCTCACTTTCAATATAAATTGTTTTCTTTGTTTGCTTCAAGTATTTTATGTCAAGT
* * *
16259328 CTGAAAATGCAGAGTATCCAATTGGTTAGAGACCAACCAAGATACTTGCTG
315 CTGAAAATGCAAAATATCCAATTGGTTAGAGACCAACCAAGATAATTGCTG
* * *
16259379 CCTAACATATTTGTATGTTGTTTCCATTGTAATTATGACTCTAATATTTCAATGGAAAGTTCGCT
1 CCTACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATGGAAAGTTCGCT
* **
16259444 TAAATATCTTGAAAATATGTGTTTCTCTTTTATTTTTAAAATTTATTTATCACTTGTTTTGCATT
66 TAAATATCTTGAAAATATGTGTTT-TCTTTTATTTTTAACA-TTATTTATCACTTGTTTTGTGTT
* *
16259509 GTCAAATTTCACCACAACTTAAGTTTTAGATATGCGCAGAGTGAAAAAAGGGGGAAACAAAACAT
129 GTCAAATTTCACCACAACTTAAGTTTCAGATACGCGC-GAGTGAAAAAAGGGGGAAACAAAACAT
16259574 AAAAAGAGTTTGGGGTGCTTATACAATCATGTCTATTTCTTTAAAAGGCTTCACTCCCTATTTTC
193 AAAAAGAGTTTGGGGTGCTTATACAATCATGTCTATTTCTTT-AAAGGCTTCACTCCCTATTTTC
** * *
16259639 AA-C-CACTTTCAATATAAATTGTTTTCTTTGATCCTTTTTTGCTTCGTGTATTTTGTGTCATGT
257 AACCTCACTTTCAATATAAATTGTTTTCTTTG-------TTTGCTTCAAGTATTTTATGTCAAGT
* * * *
16259702 CTGAAAATGCAAAATATCTACTTGGTTAGA-AGCCAACCAAGATAATTGTTT
315 CTGAAAATGCAAAATATCCAATTGGTTAGAGA-CCAACCAAGATAATTGCTG
** * *
16259753 TGTACCATATTTGTCTGTTGTTTCCATTGTAATTACGACTCTAATCTTTCAAGGGAAAGTTCGCT
1 CCTACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATGGAAAGTTCGCT
** * *
16259818 TAAATATCTCCAAAAACATGTGCTTTT-TTTTATTTTTGAACATTAATTATCACTTGTTTTGTGT
66 TAAATATCT-TGAAAATATGTG-TTTTCTTTTATTTTT-AACATTATTTATCACTTGTTTTGTGT
* * * * * *
16259882 TGTCAAATTTCACCACAACTCAAGTTTCAGATACACACCGAGTGAAAAACGAGGGGAAACTACAC
128 TGTCAAATTTCACCACAACTTAAGTTTCAGATACGC-GCGAGTGAAAAAAG-GGGGAAACAAAAC
* * * * * *
16259947 ATGAAATGAGTTTTGGGTGCTTATACAATCAGGTATATTTCCTTTAAAGGCTTCACTCCCTGTTT
191 ATAAAAAGAGTTTGGGGTGCTTATACAATCATGTCTATTT-CTTTAAAGGCTTCACTCCCTATTT
* * **
16260012 TTATCCTCACTTTTGATATAAA
255 TCAACCTCACTTTCAATATAAA
16260034 CCCTTTTCTT
Statistics
Matches: 560, Mismatches: 72, Indels: 42
0.83 0.11 0.06
Matches are distributed among these distances:
367 26 0.05
368 3 0.01
369 66 0.12
370 71 0.13
371 5 0.01
372 16 0.03
373 69 0.12
374 202 0.36
375 81 0.14
376 8 0.01
377 13 0.02
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (365 bp):
CCTACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATGGAAAGTTCGCT
TAAATATCTTGAAAATATGTGTTTTCTTTTATTTTTAACATTATTTATCACTTGTTTTGTGTTGT
CAAATTTCACCACAACTTAAGTTTCAGATACGCGCGAGTGAAAAAAGGGGGAAACAAAACATAAA
AAGAGTTTGGGGTGCTTATACAATCATGTCTATTTCTTTAAAGGCTTCACTCCCTATTTTCAACC
TCACTTTCAATATAAATTGTTTTCTTTGTTTGCTTCAAGTATTTTATGTCAAGTCTGAAAATGCA
AAATATCCAATTGGTTAGAGACCAACCAAGATAATTGCTG
Found at i:16260069 original size:14 final size:14
Alignment explanation
Indices: 16260050--16260078 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16260040 TCTTTTATCT
16260050 TCTTTTGTGTCAAG
1 TCTTTTGTGTCAAG
16260064 TCTTTTGTGTCAAG
1 TCTTTTGTGTCAAG
16260078 T
1 T
16260079 TTAAGTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.52
Consensus pattern (14 bp):
TCTTTTGTGTCAAG
Found at i:16262813 original size:375 final size:372
Alignment explanation
Indices: 16262033--16263078 Score: 1143
Period size: 377 Copynumber: 2.8 Consensus size: 372
16262023 TTGTCTGTTC
* * * * * *
16262033 TTTCCATTGTAATTATGACTCTAATCTTTTATTTGAAATTTTGCTTAAATATCTTCAAAAACAT-
1 TTTCCACTGTAATTATGACTCTAATCTTTCATTGGAAAGTTCGCTTAAATATCTTAAAAAACATG
* * * * *
16262097 TAGTTTTTCTTTTATATTTTAATATTACATACCACTT-TTTTGCATTGTCAACTTTCAACACAAT
66 T-GTTTCTCTTTTAT-TTTAAAT-TTATATA-CACTTATTTTGCATTGTCAAATTTCACCACAAT
* ** ** * * * *
16262161 TCAATTTTCCTATACAAGTAGAGAGAAAAAAGAGTGGAAAAAAAACATAAAAAGAGTTTTGGGGT
127 TCAAGTTTCAAATACAA-CCGAGTGAATAAAGGGT-G-AAAAAAACATAAAAAGAG-TTTAGGGT
* * * * * * * *
16262226 GTTTATACAATCATGTCTATTTCTCTTATAGGCTTTGTTCCCTGTTTTCAACCTTACTTTTGCTA
188 GCTTATACAATCATGTCTATTTCCCTTAAAGGCTTTGCTCCTTGTTTTCATCCTCACTTTTGATA
* * * *
16262291 TAAACTGTTTTCTTTGATCATCTCTTGTTT-AAGTATTTTGTGTCAAGTCTGAAAATGAAGAGTA
253 TAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTATCAAGTCTGAAAATGAAGAGTA
* * ** ** * * *
16262355 TCCAATTGGTTAGAGGCCAACCAAGATACTTGCTTCCTATCATTTTTGTTTGTTG
318 TCCAATTGGATAGAGGCCAACCAAGATACTTACTAACTAGAATATTTGTTCGCTG
* * ** *
16262410 TTTCCATTGTAATTATGACTCAAATCTTTCAACGGAAAGTTCGCTTAAATATCTTGAAAAACATG
1 TTTCCACTGTAATTATGACTCTAATCTTTCATTGGAAAGTTCGCTTAAATATCTTAAAAAACATG
* *
16262475 TGTTTCTCTTTTATTTTGAAATTTATTTACAACTTATTTTGCATTATCAAATTTCACCACAATTC
66 TGTTTCTCTTTTATTTT-AAATTTATATAC-ACTTATTTTGCATTGTCAAATTTCACCACAATTC
* *
16262540 AAGTTTCAGATACACACCGAGTGAATAAAGGGTGAAGAAAAACATAAAATGAGTTT-GGGTGCTT
129 AAGTTTCAAATACA-ACCGAGTGAATAAAGGGTGAA-AAAAACATAAAAAGAGTTTAGGGTGCTT
* * * *
16262604 ATACAATCATGTCTATTTCCCTTAAAGGCTTCGCTCCTTATTCTCATCCTCACTTTTTATATAAA
192 ATACAATCATGTCTATTTCCCTTAAAGGCTTTGCTCCTTGTTTTCATCCTCACTTTTGATATAAA
* * ** *
16262669 CTATTTTCTTTGATCTTCTTTTTTTTCAAGTATTTTGTATTACTTCTGAAAATGCAGAGTATCCA
257 CTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTATCAAGTCTGAAAATGAAGAGTATCCA
16262734 ATTGGATAGAGGCCAACCAAGATAAC-TACTAACTAGAATATTTG-TCGACTG
322 ATTGGATAGAGGCCAACCAAGAT-ACTTACTAACTAGAATATTTGTTCG-CTG
* * * * **
16262785 TTTTCACTGTAATTACGACTCTAATCTTTCATTGGAATGTTCTCTTAAATATCACAAAAAACATG
1 TTTCCACTGTAATTATGACTCTAATCTTTCATTGGAAAGTTCGCTTAAATATCTTAAAAAACATG
16262850 TGTTTCTCTTTTACTTTTTAACA-TTATATATCACTTATTTTGCATTGTCAAATTTCACCACAAT
66 TGTTTCTCTTTTA--TTTTAA-ATTTATATA-CACTTATTTTGCATTGTCAAATTTCACCACAAT
* ** * *
16262914 ACAAGTTTCAAATACGTGCCGAGTGAATAAAGGGGGGAAACAAAATATAAAAAGAGTTTAGGGAT
127 TCAAGTTTCAAATAC-AACCGAGTGAATAAA-GGGTGAAA-AAAACATAAAAAGAGTTTAGGG-T
* * * *
16262979 ACTTATACAATCGTGTTTATTTCCTTTAAAGGCTTTGCTCCTTGTTTTCATCCTCACTTTTGATA
188 GCTTATACAATCATGTCTATTTCCCTTAAAGGCTTTGCTCCTTGTTTTCATCCTCACTTTTGATA
*** *
16263044 TAAACCCCTTTCTTTGATCTTCTTTTGTGTCAAGT
253 TAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGT
16263079 TTAAGTTCTT
Statistics
Matches: 564, Mismatches: 87, Indels: 34
0.82 0.13 0.05
Matches are distributed among these distances:
374 85 0.15
375 142 0.25
376 96 0.17
377 148 0.26
378 5 0.01
379 88 0.16
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (372 bp):
TTTCCACTGTAATTATGACTCTAATCTTTCATTGGAAAGTTCGCTTAAATATCTTAAAAAACATG
TGTTTCTCTTTTATTTTAAATTTATATACACTTATTTTGCATTGTCAAATTTCACCACAATTCAA
GTTTCAAATACAACCGAGTGAATAAAGGGTGAAAAAAACATAAAAAGAGTTTAGGGTGCTTATAC
AATCATGTCTATTTCCCTTAAAGGCTTTGCTCCTTGTTTTCATCCTCACTTTTGATATAAACTAT
TTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTATCAAGTCTGAAAATGAAGAGTATCCAATTG
GATAGAGGCCAACCAAGATACTTACTAACTAGAATATTTGTTCGCTG
Found at i:16265027 original size:378 final size:375
Alignment explanation
Indices: 16264263--16265634 Score: 1673
Period size: 378 Copynumber: 3.6 Consensus size: 375
16264253 AAATAGAGTG
** * * * * * *
16264263 TATCCAATTTCTTAGAGGCAAACCATGATAAATATTTCCTACTATATTTGTCTGAT-TTTCCATT
1 TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCCTACCATATTTGTCTGTTGTTTCCATT
* * **** * **
16264327 ATAATTATTACTCTAATCTTTCATTTAAAATTTCACTTAAATATCTTCAAAAACAT-TAGTTTTA
66 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACATGT-G-TTT-
* * * * *
16264391 TTCTTTTATTTTTTAACA-TTATATT-CCACTTGTTTTGCCTTGTCAACTTTCACCACAATTCAA
128 CTCTTTTATTTTTGAA-ATTTAT-TTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAA
** * * * * ** * * * * *
16264454 GTTTCCTATACGAGCCCAGTGAAAACACAATGGAAAAAAAACATAAAAAGGGTTTTGGGATGTTT
191 GTTTCAGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTT
* * * * * *
16264519 ATACAATCATGTCTATTTCTCTTAAAGGCTTCGCTCCCTATTTTTAACCTCACTTTCGATATAAA
256 ATACAATC-T-TTTCTTTC-CCTAAAAGCTTCGCTCCCTATTTTCAA-CTCACTTTTGATATAAA
* * * * * * * *
16264584 CTATTTTATTTGATCATCTTTTGTTTCAAATATTTTGTGTCAAGTCTAAAAATACAGAG
317 CTGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAA
** * * * *
16264643 TATCCAATTGGTTAGAGGTTAACCAAGATACCTGCTTCCTAGCATATTTGTCTGTTGCTTCCATT
1 TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCCTACCATATTTGTCTGTTGTTTCCATT
** *
16264708 GTAATTATTTCTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACAT-TAGTTTTT
66 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACATGT-GTTTCT
** *
16264772 CTTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATAAAAAATT
130 CTTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAAT-TCAAGTT
* * *
16264837 TTAGATACGCGTCGAGTGAAAAAAGGGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTATA
194 TCAGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTATA
*
16264902 CAATCTTTTCTTCTCCCTAAAAGCTTTGCTCCCTATTTTCAACTTCACTTTTGATATAAACTGTT
259 CAATCTTTTCTT-TCCCTAAAAGCTTCGCTCCCTATTTTCAAC-TCACTTTTGATATAAACTGTT
* *
16264967 TTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTTTGAAAATGCAAAA
322 TTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAA
* * * *
16265021 TATCCAATTAGTTAGAGGCCAACCTAGATAATTGTTTCGTACCATATTTGTCTGTTGTTTCCATT
1 TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCCTACCATATTTGTCTGTTGTTTCCATT
*
16265086 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCGCTTAAATATCACCAAAAACATGTGTTTCTC
66 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACATGTGTTTCTC
* *
16265151 TTTTATTTTTGAAATTTATTTATCACTTGTTCTGCATTGTCAAATTTCACCACAATTCAACTTTC
131 TTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAAGTTTC
* * * *
16265216 AGATACGCGTCGAGTGAAAAATGGGGGGAAACAAAACATAAAAAGAGTTTGGGGGTGCTTATACA
196 AGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTATACA
* * *
16265281 ATCATTTATGTTTCCCTAAAAGGCTTCGCTCCCTATTTTCAACTCAC-TTT-CTATAAATTGTTT
261 ATC-TTT-TCTTTCCCTAAAA-GCTTCGCTCCCTATTTTCAACTCACTTTTGATATAAACTGTTT
* *
16265344 TCTTTGATCTTCTTTTCTTTCAAGTATTTTGTGTCATGTCTGAAAATGGAGAA
323 TCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAA
* * *
16265397 TATCCAATTGGTTAAAGGCCAACCAAGATAACTGTTTCGTTCCATATTTGTCTGTTGTTTCCATT
1 TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCCTACCATATTTGTCTGTTGTTTCCATT
* *
16265462 GTAATTATGACCCTAATCTTTCAACGGAAAGTTCGCTTAAATAAT-ACCAAAAACATGTGTTTCT
66 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAAT-ATCACCAAAAACATGTGTTTCT
* * *
16265526 CTTTTATTTTT-AAACATTATTTATCACTTGTTTTGCATTGTCAAATTTAAACACAATTCAAGTT
130 CTTTTATTTTTGAAA-TTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAAGTT
* * *
16265590 TCAGATACGCACCGATTGAAAAAAGAGGGGAAACGAAACATAAAA
194 TCAGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAA
16265635 TGTAACAGCC
Statistics
Matches: 872, Mismatches: 108, Indels: 28
0.87 0.11 0.03
Matches are distributed among these distances:
375 3 0.00
376 274 0.31
377 77 0.09
378 279 0.32
379 77 0.09
380 105 0.12
381 57 0.07
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (375 bp):
TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCCTACCATATTTGTCTGTTGTTTCCATT
GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACATGTGTTTCTC
TTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAAGTTTC
AGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTATACA
ATCTTTTCTTTCCCTAAAAGCTTCGCTCCCTATTTTCAACTCACTTTTGATATAAACTGTTTTCT
TTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAA
Found at i:16265480 original size:376 final size:375
Alignment explanation
Indices: 16264263--16265634 Score: 1682
Period size: 376 Copynumber: 3.6 Consensus size: 375
16264253 AAATAGAGTG
** * * * * * * *
16264263 TATCCAATTTCTTAGAGGCAAACCATGATAAATATTTCCTACTATATTTGTCTGAT-TTTCCATT
1 TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCGTACCATATTTGTCTGTTGTTTCCATT
* * **** * ** *
16264327 ATAATTATTACTCTAATCTTTCATTTAAAATTTCACTTAAATATCTTCAAAAACATTAGTTTTAT
66 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACATTAG-TTT-C
* * * *
16264392 TCTTTTATTTTTTAACA-TTATATT-CCACTTGTTTTGCCTTGTCAACTTTCACCACAATTCAAG
129 TCTTTTATTTTTGAA-ATTTAT-TTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAAG
** * * * * ** * * * * *
16264455 TTTCCTATACGAGCCCAGTGAAAACACAATGGAAAAAAAACATAAAAAGGGTTTTGGGATGTTTA
192 TTTCAGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTA
* * * *
16264520 TACAATCATGTCTATTTCTCTTAAAGGCTTCGCTCCCTATTTTTAACCTCACTTTCGATATAAAC
257 TACAATCAT-TTTATTTCCCTAAAAGGCTTCGCTCCCTATTTTCAA-CTCACTTTC--TATAAAC
* * * * * * * *
16264585 TATTTTATTTGATCATCTTTTGTTTCAAATATTTTGTGTCAAGTCTAAAAATACAGAG
318 TGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAA
** * * * * *
16264643 TATCCAATTGGTTAGAGGTTAACCAAGATACCTGCTTCCTAGCATATTTGTCTGTTGCTTCCATT
1 TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCGTACCATATTTGTCTGTTGTTTCCATT
** *
16264708 GTAATTATTTCTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACATTAGTTTTTC
66 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACATTAGTTTCTC
** *
16264773 TTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATAAAAAATTT
131 TTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAAT-TCAAGTTT
* * *
16264838 TAGATACGCGTCGAGTGAAAAAAGGGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTATAC
195 CAGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTATAC
* * *
16264903 AATC-TTTTCTTCTCCCTAAAA-GCTTTGCTCCCTATTTTCAACTTCACTTTTGATATAAACTGT
260 AATCATTTTATT-TCCCTAAAAGGCTTCGCTCCCTATTTTCAAC-TCAC-TTT-CTATAAACTGT
* *
16264966 TTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTTTGAAAATGCAAAA
321 TTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAA
* * *
16265021 TATCCAATTAGTTAGAGGCCAACCTAGATAATTGTTTCGTACCATATTTGTCTGTTGTTTCCATT
1 TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCGTACCATATTTGTCTGTTGTTTCCATT
*
16265086 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCGCTTAAATATCACCAAAAACATGT-GTTTCT
66 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACAT-TAGTTTCT
* *
16265150 CTTTTATTTTTGAAATTTATTTATCACTTGTTCTGCATTGTCAAATTTCACCACAATTCAACTTT
130 CTTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAAGTTT
* * * *
16265215 CAGATACGCGTCGAGTGAAAAATGGGGGGAAACAAAACATAAAAAGAGTTTGGGGGTGCTTATAC
195 CAGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTATAC
* *
16265280 AATCATTTATGTTTCCCTAAAAGGCTTCGCTCCCTATTTTCAACTCACTTTCTATAAATTGTTTT
260 AATCATTT-TATTTCCCTAAAAGGCTTCGCTCCCTATTTTCAACTCACTTTCTATAAACTGTTTT
* *
16265345 CTTTGATCTTCTTTTCTTTCAAGTATTTTGTGTCATGTCTGAAAATGGAGAA
324 CTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAA
* *
16265397 TATCCAATTGGTTAAAGGCCAACCAAGATAACTGTTTCGTTCCATATTTGTCTGTTGTTTCCATT
1 TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCGTACCATATTTGTCTGTTGTTTCCATT
* *
16265462 GTAATTATGACCCTAATCTTTCAACGGAAAGTTCGCTTAAATAAT-ACCAAAAACATGT-GTTTC
66 GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAAT-ATCACCAAAAACAT-TAGTTTC
* * *
16265525 TCTTTTATTTTT-AAACATTATTTATCACTTGTTTTGCATTGTCAAATTTAAACACAATTCAAGT
129 TCTTTTATTTTTGAAA-TTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAAGT
* * *
16265589 TTCAGATACGCACCGATTGAAAAAAGAGGGGAAACGAAACATAAAA
193 TTCAGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAA
16265635 TGTAACAGCC
Statistics
Matches: 870, Mismatches: 108, Indels: 32
0.86 0.11 0.03
Matches are distributed among these distances:
375 3 0.00
376 274 0.31
377 77 0.09
378 269 0.31
379 85 0.10
380 105 0.12
381 57 0.07
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (375 bp):
TATCCAATTGGTTAGAGGCCAACCAAGATAACTGTTTCGTACCATATTTGTCTGTTGTTTCCATT
GTAATTATGACTCTAATCTTTCAACGGAAAGTTCACTTAAATATCACCAAAAACATTAGTTTCTC
TTTTATTTTTGAAATTTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAAGTTTC
AGATACGCGCCGAGTGAAAAAAGAGGGGAAACAAAACATAAAAAGAGTTTAGGGGTGCTTATACA
ATCATTTTATTTCCCTAAAAGGCTTCGCTCCCTATTTTCAACTCACTTTCTATAAACTGTTTTCT
TTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAA
Found at i:16269929 original size:23 final size:23
Alignment explanation
Indices: 16269872--16269929 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
16269862 CGTCCATCCT
* * *
16269872 TGCTGACTGGACCTTCTGGAAGT
1 TGCTGACTGGATCTTCTAGAAGG
16269895 TGCTGACTGGATCTTCTAGAAGG
1 TGCTGACTGGATCTTCTAGAAGG
*
16269918 TGCTAACTGGAT
1 TGCTGACTGGAT
16269930 GCTAAGAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (23 bp):
TGCTGACTGGATCTTCTAGAAGG
Found at i:16273893 original size:209 final size:209
Alignment explanation
Indices: 16273308--16274201 Score: 1111
Period size: 209 Copynumber: 4.3 Consensus size: 209
16273298 CGATTACCCA
* * *
16273308 AAACAA-TGA-GCTGGTCATCTTCCTGATGAGATAC-AGAGAAGTATACCAACTCAATGAAGCCA
1 AAACAAGTGATGC-GGTCATCTTCCTGATGAGATACTA-AGAAGAAGACCAAATCAATGAAGCCA
* *
16273370 AGCTCAAAGTGAGCAAATCTTCGAA-CCCAACTTCCTGATGAGATACTGAGAAGCAGGTTGAAGC
64 AGCTCAAAGTGAGCAAATCTTCGAACCCCATCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGC
* * * * * *
16273434 AATAAAATGGTTAGCTT-TCGGATGAGATACTA-ATAAGTGGACTAAATTCGTCTTCCTGAGGAG
129 AATAAAATGGTTACCTTCT-TGATGAGATAC-AGAGAAGTGAACCAAATTCGTCTTCCTGATGAG
*
16273497 ATACAGAGAAGCGGATTG
192 ACACAGAGAAGCGGATTG
16273515 AAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGACAGACCAAATCAATGAAGC
1 AAACAAGTGATGCGGTCATCTTCCTGATGAGATACT---AAGAAGA-AGACCAAATCAATGAAGC
* * *
16273580 CAAGCTCAAAGTGAGCAAATCTTCGAACCCCAGCTTCTTGATGAGATACTGAGAAGCAGGTTGAA
62 CAAGCTCAAAGTGAGCAAATCTTCGAACCCCATCTTCCTGATGAGATACTGAGAAGCAGGTCGAA
* * * *
16273645 GCAATAAAATGGTTAGCTTCTTGATGAGATACTGAGAAGTGGACCAAATTAGTCTTCCTGATGAG
127 GCAATAAAATGGTTACCTTCTTGATGAGATACAGAGAAGTGAACCAAATTCGTCTTCCTGATGAG
* *
16273710 ATACAGAGAAGCAGATTG
192 ACACAGAGAAGCGGATTG
* * * *
16273728 AAACAAGTTATGCGGTCATCTTCCTGATGAGGTACTAAGAAGAAGACCAAATCAATGAAGCTAGG
1 AAACAAGTGATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAATGAAGCCAAG
* * * *
16273793 CTCAAAGTGAGCGAATCTTCGAACCCTATCTTCCTAATGAGATACTGAGAAGCAAGTCGAAGCAA
66 CTCAAAGTGAGCAAATCTTCGAACCCCATCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAA
*** * *** *
16273858 TAAAGCAGTTACCTTCTTGATGGGATACAGAGAAGTGAACTGGA-TCTGTCTTCTTGATGAGACA
131 TAAAATGGTTACCTTCTTGATGAGATACAGAGAAGTGAACCAAATTC-GTCTTCCTGATGAGACA
*
16273922 CAGAGAAGTGGA-TG
195 CAGAGAAGCGGATTG
* * ** *
16273936 AAAATAAGTGATGCGGTCATCTTCCTGATGAGGTACTGTGAAGAAGACCAAATCAATGAAGCCAG
1 -AAACAAGTGATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAATGAAGCCAA
* *
16274001 GCTCAAAGTGAGCGAATCTTAGAACCCCATCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
65 GCTCAAAGTGAGCAAATCTTCGAACCCCATCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
* * * * * * *
16274066 ATAAAGTGGTTACCTTCCTGATGGGATATAGAGAAGTGAACCAGATCCGTCTTCTTGATGAGACA
130 ATAAAATGGTTACCTTCTTGATGAGATACAGAGAAGTGAACCAAATTCGTCTTCCTGATGAGACA
* * **
16274131 TAGAGAAGTGGATCA
195 CAGAGAAGCGGATTG
* * *
16274146 AAACAAGTGATGCGGTCATCTTCTTGATGAGATATTAAGAAGTAGACCAAATCAAT
1 AAACAAGTGATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAAT
16274202 AACACCAAAC
Statistics
Matches: 609, Mismatches: 64, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
207 6 0.01
208 28 0.05
209 375 0.62
210 8 0.01
211 5 0.01
212 44 0.07
213 142 0.23
214 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (209 bp):
AAACAAGTGATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAATCAATGAAGCCAAG
CTCAAAGTGAGCAAATCTTCGAACCCCATCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAA
TAAAATGGTTACCTTCTTGATGAGATACAGAGAAGTGAACCAAATTCGTCTTCCTGATGAGACAC
AGAGAAGCGGATTG
Found at i:16275333 original size:19 final size:19
Alignment explanation
Indices: 16275309--16275345 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
16275299 ATAATGACCT
16275309 TATTAGTATTAATTAATAC
1 TATTAGTATTAATTAATAC
16275328 TATTAGTATTAATTAATA
1 TATTAGTATTAATTAATA
16275346 TTAATAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (19 bp):
TATTAGTATTAATTAATAC
Found at i:16275342 original size:10 final size:10
Alignment explanation
Indices: 16275310--16275365 Score: 60
Period size: 10 Copynumber: 5.7 Consensus size: 10
16275300 TAATGACCTT
*
16275310 ATTAGTATTA
1 ATTAATATTA
*
16275320 ATTAATACT-
1 ATTAATATTA
*
16275329 ATTAGTATTA
1 ATTAATATTA
16275339 ATTAATATTA
1 ATTAATATTA
*
16275349 ATAAATATTA
1 ATTAATATTA
*
16275359 AATAATA
1 ATTAATA
16275366 AAGAAAGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
9 7 0.19
10 30 0.81
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.45
Consensus pattern (10 bp):
ATTAATATTA
Found at i:16294911 original size:69 final size:69
Alignment explanation
Indices: 16294789--16294932 Score: 243
Period size: 69 Copynumber: 2.1 Consensus size: 69
16294779 TGTTCCATGC
* * * *
16294789 ATATCTATAAGATTGTGGATAACCTAAAATAATGCGATTAGTTTACTGTGTACTCTAATATATAT
1 ATATATATAAGATTGTGAATAACCTAAAATAATGCGATTAATTTACTGCGTACTCTAATATATAT
16294854 ATAT
66 ATAT
*
16294858 ATATATATTAGATTGTGAATAACCTAAAATAATGCGATTAATTTACTGCGTACTCTAATATATAT
1 ATATATATAAGATTGTGAATAACCTAAAATAATGCGATTAATTTACTGCGTACTCTAATATATAT
16294923 ATAT
66 ATAT
16294927 ATATAT
1 ATATAT
16294933 TATCATGAGA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.40
Consensus pattern (69 bp):
ATATATATAAGATTGTGAATAACCTAAAATAATGCGATTAATTTACTGCGTACTCTAATATATAT
ATAT
Found at i:16295388 original size:41 final size:41
Alignment explanation
Indices: 16295338--16295418 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
16295328 GCTTTTATAT
16295338 TTTTATTTCATTCTTCGGATTATTTTGTTATCAATATTTGA
1 TTTTATTTCATTCTTCGGATTATTTTGTTATCAATATTTGA
16295379 TTTTATTTCATTCTTCGGATTATTTTGTTATCAATATTTG
1 TTTTATTTCATTCTTCGGATTATTTTGTTATCAATATTTG
16295419 GAGATTTGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.59
Consensus pattern (41 bp):
TTTTATTTCATTCTTCGGATTATTTTGTTATCAATATTTGA
Found at i:16297729 original size:13 final size:13
Alignment explanation
Indices: 16297713--16297779 Score: 80
Period size: 13 Copynumber: 4.8 Consensus size: 13
16297703 TGGTGAAGGA
*
16297713 TATTAATCTAAAG
1 TATTAATCTAAAC
16297726 TATTAATCTAAAC
1 TATTAATCTAAAC
*
16297739 TAAATTAATCTAAAG
1 T--ATTAATCTAAAC
16297754 TATTAATCTAAAC
1 TATTAATCTAAAC
16297767 TAAATTAATCTAA
1 T--ATTAATCTAA
16297780 GGTAAAGCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
13 25 0.53
15 22 0.47
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.37
Consensus pattern (13 bp):
TATTAATCTAAAC
Found at i:16297746 original size:28 final size:28
Alignment explanation
Indices: 16297714--16297779 Score: 132
Period size: 28 Copynumber: 2.4 Consensus size: 28
16297704 GGTGAAGGAT
16297714 ATTAATCTAAAGTATTAATCTAAACTAA
1 ATTAATCTAAAGTATTAATCTAAACTAA
16297742 ATTAATCTAAAGTATTAATCTAAACTAA
1 ATTAATCTAAAGTATTAATCTAAACTAA
16297770 ATTAATCTAA
1 ATTAATCTAA
16297780 GGTAAAGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.36
Consensus pattern (28 bp):
ATTAATCTAAAGTATTAATCTAAACTAA
Found at i:16297785 original size:15 final size:15
Alignment explanation
Indices: 16297714--16297785 Score: 89
Period size: 15 Copynumber: 5.1 Consensus size: 15
16297704 GGTGAAGGAT
16297714 ATTAATCTAAAGT--
1 ATTAATCTAAAGTAA
*
16297727 ATTAATCTAAACTAA
1 ATTAATCTAAAGTAA
16297742 ATTAATCTAAAGT--
1 ATTAATCTAAAGTAA
*
16297755 ATTAATCTAAACTAA
1 ATTAATCTAAAGTAA
*
16297770 ATTAATCTAAGGTAA
1 ATTAATCTAAAGTAA
16297785 A
1 A
16297786 GCTAAAACTA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
13 24 0.48
15 26 0.52
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.35
Consensus pattern (15 bp):
ATTAATCTAAAGTAA
Found at i:16299721 original size:3 final size:3
Alignment explanation
Indices: 16299702--16299808 Score: 54
Period size: 3 Copynumber: 35.7 Consensus size: 3
16299692 GGTCGGGGTT
* * * * * * * *
16299702 GTG GTG ATG GCG GTG GTG GTT GTG ATG GTG GTG GTG GAG GTC ATG ATG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
* * * * * * *
16299750 GTG GTA ATG GTT ATG GTG GTT GTG TTG GTG GTG GTG GTG GTCA G-G
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GT-G GTG
*
16299795 GTC GTG GTG GTG GT
1 GTG GTG GTG GTG GT
16299809 AGTACTGTTG
Statistics
Matches: 72, Mismatches: 30, Indels: 4
0.68 0.28 0.04
Matches are distributed among these distances:
2 1 0.01
3 70 0.97
4 1 0.01
ACGTcount: A:0.08, C:0.04, G:0.53, T:0.35
Consensus pattern (3 bp):
GTG
Found at i:16299801 original size:21 final size:21
Alignment explanation
Indices: 16299777--16299857 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
16299767 GGTTGTGTTG
16299777 GTGGTGGTGGTGGTCAGGGTC
1 GTGGTGGTGGTGGTCAGGGTC
* *
16299798 GTGGTGGTGGTAGTACTGTTGGTC
1 GTGGTGGTGGTGGT-CAG--GGTC
* * * *
16299822 GTTGTGGTAGTGGTCATGGTA
1 GTGGTGGTGGTGGTCAGGGTC
*
16299843 GTGGTAGTGGTGGTC
1 GTGGTGGTGGTGGTC
16299858 GTGTTAGTCT
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
21 28 0.61
22 2 0.04
23 1 0.02
24 15 0.33
ACGTcount: A:0.09, C:0.07, G:0.49, T:0.35
Consensus pattern (21 bp):
GTGGTGGTGGTGGTCAGGGTC
Found at i:16300158 original size:15 final size:15
Alignment explanation
Indices: 16300140--16300174 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
16300130 GGTGGTGGAC
16300140 GTGGTCGTGGTAATG
1 GTGGTCGTGGTAATG
*
16300155 GTGGTTGTGGTAATG
1 GTGGTCGTGGTAATG
*
16300170 ATGGT
1 GTGGT
16300175 GGTGCAAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.03, G:0.46, T:0.37
Consensus pattern (15 bp):
GTGGTCGTGGTAATG
Found at i:16300272 original size:21 final size:21
Alignment explanation
Indices: 16300246--16300653 Score: 232
Period size: 21 Copynumber: 19.2 Consensus size: 21
16300236 AAAATAAATA
* * *
16300246 TACTACTACCACTACTAATGC
1 TACTACTGCTACTACTACTGC
*
16300267 TACTACT-CTACTACTATTGTTGC
1 TACTACTGCTACTACTA---CTGC
** * *
16300290 TGTTACAGCTACAACTACTGC
1 TACTACTGCTACTACTACTGC
* *
16300311 TATTACTGCTACTACTACTTC
1 TACTACTGCTACTACTACTGC
*
16300332 TACTACTGCTACTATTACTGC
1 TACTACTGCTACTACTACTGC
** * *
16300353 TACTACAACTACTTCTACTAC
1 TACTACTGCTACTACTACTGC
*
16300374 TACTACTGCTACTACTATTGC
1 TACTACTGCTACTACTACTGC
*
16300395 TACTACTGCTACTACTACTAC
1 TACTACTGCTACTACTACTGC
*
16300416 TACTACTGCTACTGCTACTG-
1 TACTACTGCTACTACTACTGC
* * *
16300436 T--TATTGCTACTGCTATTGC
1 TACTACTGCTACTACTACTGC
* * **
16300455 TATTGCTATTGCTACTGCTACAAC
1 TA---CTACTGCTACTACTACTGC
* ** *
16300479 TATTACTGCTACTGTTACTAC
1 TACTACTGCTACTACTACTGC
* * *
16300500 TACTACTACAACTATTACTGC
1 TACTACTGCTACTACTACTGC
*
16300521 TACTACTGCTACTACTGCTACTAC
1 TACTACTGCTACTA---CTACTGC
* * *
16300545 TACTATTGCTGCTACTACTAC
1 TACTACTGCTACTACTACTGC
* * * *
16300566 TGCTA-TGACTACTGCTGCTAC
1 TACTACTG-CTACTACTACTGC
* * *
16300587 TATTACTGTTACGACTACTGC
1 TACTACTGCTACTACTACTGC
* * * *
16300608 AACTACTACTAATGCTACTGC
1 TACTACTGCTACTACTACTGC
* * **
16300629 TACTACTACTGCTACTGTTGC
1 TACTACTGCTACTACTACTGC
16300650 TACT
1 TACT
16300654 TGATCAGCCT
Statistics
Matches: 300, Mismatches: 72, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
18 15 0.05
19 1 0.00
20 11 0.04
21 222 0.74
22 2 0.01
23 7 0.02
24 42 0.14
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.37
Consensus pattern (21 bp):
TACTACTGCTACTACTACTGC
Found at i:16300319 original size:9 final size:9
Alignment explanation
Indices: 16300303--16300644 Score: 146
Period size: 9 Copynumber: 37.3 Consensus size: 9
16300293 TACAGCTACA
16300303 ACTACTGCT
1 ACTACTGCT
*
16300312 ATTACTGCTACT
1 ACTACTG---CT
*
16300324 ACTACTTCT
1 ACTACTGCT
16300333 ACTACTGCT
1 ACTACTGCT
* *
16300342 ACTATTACT
1 ACTACTGCT
* * *
16300351 GCTACTACA
1 ACTACTGCT
*
16300360 ACTACTTCT
1 ACTACTGCT
*
16300369 ACTACTACT
1 ACTACTGCT
* *
16300378 ACTGCTACT
1 ACTACTGCT
*
16300387 ACTATTGCT
1 ACTACTGCT
16300396 ACTACTGCT
1 ACTACTGCT
*
16300405 ACTACTACT
1 ACTACTGCT
*
16300414 ACTACTACT
1 ACTACTGCT
*
16300423 GCTACTGCT
1 ACTACTGCT
** **
16300432 ACTGTTATT
1 ACTACTGCT
*
16300441 GCTACTGCT
1 ACTACTGCT
* * **
16300450 ATTGCTATT
1 ACTACTGCT
* *
16300459 GCTATTGCT
1 ACTACTGCT
* * *
16300468 ACTGCTACA
1 ACTACTGCT
* *
16300477 ACTATTACT
1 ACTACTGCT
* *
16300486 GCTACTGTT
1 ACTACTGCT
*
16300495 ACTACTACT
1 ACTACTGCT
**
16300504 ACTACAACT
1 ACTACTGCT
*
16300513 ATTACTGCT
1 ACTACTGCT
16300522 ACTACTGCT
1 ACTACTGCT
16300531 ACTACTGCT
1 ACTACTGCT
*
16300540 ACTACTACT
1 ACTACTGCT
* *
16300549 ATTGCTGCT
1 ACTACTGCT
*
16300558 ACTACTACT
1 ACTACTGCT
*
16300567 GCTA-TGACT
1 ACTACTG-CT
*
16300576 ACTGCTGCT
1 ACTACTGCT
*
16300585 ACTATTACTGTT
1 AC---TACTGCT
* *
16300597 ACGACTACT
1 ACTACTGCT
* * *
16300606 GCAACTACT
1 ACTACTGCT
*
16300615 ACTAATGCT
1 ACTACTGCT
* *
16300624 ACTGCTACT
1 ACTACTGCT
16300633 ACTACTGCT
1 ACTACTGCT
16300642 ACT
1 ACT
16300645 GTTGCTACTT
Statistics
Matches: 236, Mismatches: 89, Indels: 16
0.69 0.26 0.05
Matches are distributed among these distances:
8 1 0.00
9 219 0.93
10 2 0.01
12 14 0.06
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.37
Consensus pattern (9 bp):
ACTACTGCT
Found at i:16300323 original size:6 final size:6
Alignment explanation
Indices: 16300314--16300645 Score: 134
Period size: 6 Copynumber: 56.8 Consensus size: 6
16300304 CTACTGCTAT
* * ** *
16300314 TACTGC TACTAC TACT-- T-CTAC TACTGC TACTAT TACTGC TACTAC
1 TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC
* * * * * * * * * *
16300359 AACTAC TTCTAC TACTAC TACTGC TACTAC TATTGC TACTAC TGCTAC
1 TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC
* * * * *
16300407 TACTAC TACTAC TACTGC TACTGC TACTGT TATTGC TACTGC TATTGC
1 TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC
* * ** * *
16300455 TATTGC TATTGC TACTGC TACAAC TA-T-- TACTGC TACTGT TACTAC
1 TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC
* ** * * * *
16300500 TACTAC TACAAC TA-T-- TACTGC TACTAC TGCTAC TACTGC TACTAC
1 TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC TACTGC
** * * **
16300545 TACTAT TGCTGC TACTAC TACTGC TA-TGAC TACTG- --CTGC TACTAT
1 TACTGC TACTGC TACTGC TACTGC TACTG-C TACTGC TACTGC TACTGC
* * * *
16300590 TACTGT TAC-GAC TACTGCAAC TACTAC TAATGC TACTGC TACTAC TACTGC
1 TACTGC TACTG-C TACTG---C TACTGC TACTGC TACTGC TACTGC TACTGC
16300641 TACTG
1 TACTG
16300646 TTGCTACTTG
Statistics
Matches: 252, Mismatches: 56, Indels: 36
0.73 0.16 0.10
Matches are distributed among these distances:
3 9 0.04
4 3 0.01
5 4 0.02
6 227 0.90
7 3 0.01
9 6 0.02
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.36
Consensus pattern (6 bp):
TACTGC
Found at i:16300329 original size:12 final size:12
Alignment explanation
Indices: 16300266--16300644 Score: 208
Period size: 12 Copynumber: 32.2 Consensus size: 12
16300256 ACTACTAATG
16300266 CTACTACT-CTA
1 CTACTACTGCTA
* * *
16300277 CTACTATTGTTG
1 CTACTACTGCTA
** *
16300289 CTGTTACAGCTA
1 CTACTACTGCTA
*
16300301 CAACTACTGCTA
1 CTACTACTGCTA
16300313 -T--TACTGCTA
1 CTACTACTGCTA
16300322 CTACTACT--T-
1 CTACTACTGCTA
16300331 CTACTACTGCTA
1 CTACTACTGCTA
*
16300343 CTATTACTGCTA
1 CTACTACTGCTA
* * *
16300355 CTACAACTACTT
1 CTACTACTGCTA
*
16300367 CTACTACTACTA
1 CTACTACTGCTA
* *
16300379 CTGCTACTACTA
1 CTACTACTGCTA
* * * *
16300391 TTGCTACTACTG
1 CTACTACTGCTA
*
16300403 CTACTACTACTA
1 CTACTACTGCTA
16300415 CTACTACTGCTA
1 CTACTACTGCTA
* *
16300427 CTGCTACTGTTA
1 CTACTACTGCTA
* *
16300439 TTGCTACTGCTA
1 CTACTACTGCTA
* * *
16300451 TTGCTATTGCTA
1 CTACTACTGCTA
* *
16300463 TTGCTACTGCTA
1 CTACTACTGCTA
*
16300475 CAACTA-T--TA
1 CTACTACTGCTA
* *
16300484 CTGCTACTGTTA
1 CTACTACTGCTA
*
16300496 CTACTACTACTA
1 CTACTACTGCTA
* * * *
16300508 CAACTATTACTG
1 CTACTACTGCTA
16300520 CTACTACTGCTA
1 CTACTACTGCTA
* *
16300532 CTACTGCTACTA
1 CTACTACTGCTA
16300544 CTACTATTGCTGCTA
1 CTACTA---CTGCTA
16300559 CTACTACTGCTATGA
1 CTACTACTGC--T-A
*
16300574 CTACTGCTGCTA
1 CTACTACTGCTA
* *
16300586 CTATTACTGTTA
1 CTACTACTGCTA
*
16300598 CGACTACTGC-A
1 CTACTACTGCTA
*
16300609 --ACTACTACTA
1 CTACTACTGCTA
* *
16300619 ATGCTACTGCTA
1 CTACTACTGCTA
16300631 CTACTACTGCTA
1 CTACTACTGCTA
16300643 CT
1 CT
16300645 GTTGCTACTT
Statistics
Matches: 284, Mismatches: 65, Indels: 37
0.74 0.17 0.10
Matches are distributed among these distances:
9 29 0.10
10 4 0.01
11 10 0.04
12 218 0.77
13 1 0.00
14 1 0.00
15 21 0.07
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.37
Consensus pattern (12 bp):
CTACTACTGCTA
Found at i:16300487 original size:15 final size:15
Alignment explanation
Indices: 16300467--16300523 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
16300457 TTGCTATTGC
16300467 TACTGCTACAACTAT
1 TACTGCTACAACTAT
* *
16300482 TACTGCTACTGTTACTAC
1 TACTGCTAC---AACTAT
*
16300500 TACTACTACAACTAT
1 TACTGCTACAACTAT
16300515 TACTGCTAC
1 TACTGCTAC
16300524 TACTGCTACT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
15 21 0.64
18 12 0.36
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (15 bp):
TACTGCTACAACTAT
Found at i:16300593 original size:27 final size:28
Alignment explanation
Indices: 16300303--16300644 Score: 188
Period size: 27 Copynumber: 12.5 Consensus size: 28
16300293 TACAGCTACA
** * *
16300303 ACTACTGCTATTACTGCTACTACTACT-
1 ACTACTGCTGCTACTACTACTGCTACTG
* * * *
16300330 TCTACTACTGCTACTATTACTGCTACTACA
1 ACTACTGCTGCTACTACTACTGCTACT--G
* *
16300360 ACTACTTCTACTACTACTACTGCTACT-
1 ACTACTGCTGCTACTACTACTGCTACTG
* * * *
16300387 ACTATTGCTACTACTGCTACTACTACT-
1 ACTACTGCTGCTACTACTACTGCTACTG
* * * *
16300414 ACTACTACTGCTACTGCTACTGTTATTG
1 ACTACTGCTGCTACTACTACTGCTACTG
* * * *
16300442 -CTA---CTGCTATTGCTATTGCTATTG
1 ACTACTGCTGCTACTACTACTGCTACTG
* * *
16300466 -CTACTGCTACAACTATTACTGCTACTG
1 ACTACTGCTGCTACTACTACTGCTACTG
* * * * **
16300493 -TTACTACTACTACTACAACTATTACTG
1 ACTACTGCTGCTACTACTACTGCTACTG
* * *
16300520 -CTACTACTGCTACTACTGCTACTACT-
1 ACTACTGCTGCTACTACTACTGCTACTG
*
16300546 ACTATTGCTGCTACTACTACTGCTA-TG
1 ACTACTGCTGCTACTACTACTGCTACTG
* *
16300573 ACTACTGCTGCTACTATTACTGTTAC-G
1 ACTACTGCTGCTACTACTACTGCTACTG
** *
16300600 ACTACTGCAACTACTACTAATGCTACTG
1 ACTACTGCTGCTACTACTACTGCTACTG
*
16300628 CTACTACTACTGCTACT
1 --ACTACTGCTGCTACT
16300645 GTTGCTACTT
Statistics
Matches: 244, Mismatches: 58, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
24 21 0.09
26 1 0.00
27 186 0.76
28 1 0.00
30 35 0.14
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.37
Consensus pattern (28 bp):
ACTACTGCTGCTACTACTACTGCTACTG
Found at i:16302762 original size:24 final size:24
Alignment explanation
Indices: 16302726--16302800 Score: 132
Period size: 24 Copynumber: 3.1 Consensus size: 24
16302716 TTAAACTCTG
16302726 TCTGGGCTCGTAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATCAT
*
16302750 TCTGGGCTTGTAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATCAT
*
16302774 TCTGGGCTCATAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATCAT
16302798 TCT
1 TCT
16302801 AGTCTCGTGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (24 bp):
TCTGGGCTCGTAAGAGCTAATCAT
Found at i:16305059 original size:9 final size:9
Alignment explanation
Indices: 16305047--16305285 Score: 130
Period size: 9 Copynumber: 26.6 Consensus size: 9
16305037 GCTATCACTG
16305047 CTACTGCTA
1 CTACTGCTA
16305056 CTACTGCTA
1 CTACTGCTA
*
16305065 TTACTGCTA
1 CTACTGCTA
*
16305074 CTACTACTA
1 CTACTGCTA
** *
16305083 CTACAATTATTG
1 CTAC---TGCTA
16305095 CTACTGCTA
1 CTACTGCTA
*
16305104 CTACTACT-
1 CTACTGCTA
16305112 CT--TGCTA
1 CTACTGCTA
*
16305119 CTAGTGCTA
1 CTACTGCTA
*
16305128 CTGCTG-T-
1 CTACTGCTA
16305135 -TACTGCTA
1 CTACTGCTA
*
16305143 CTACTGCTG
1 CTACTGCTA
* *
16305152 TTACTGCTC
1 CTACTGCTA
*
16305161 CTATTGCTA
1 CTACTGCTA
16305170 CTACTGCTACTA
1 CTACTG---CTA
16305182 CTACTGCTA
1 CTACTGCTA
*
16305191 GTACTGCTA
1 CTACTGCTA
* *
16305200 CTACTACTG
1 CTACTGCTA
* *
16305209 CTGCTACTA
1 CTACTGCTA
**
16305218 CTACTATTA
1 CTACTGCTA
*
16305227 CTATTGCTA
1 CTACTGCTA
*
16305236 CTACTACTA
1 CTACTGCTA
** *
16305245 CTGTTACTA
1 CTACTGCTA
* *
16305254 CTACTTCTG
1 CTACTGCTA
16305263 CTACTGCTA
1 CTACTGCTA
* *
16305272 CTGCTACTA
1 CTACTGCTA
16305281 CTACT
1 CTACT
16305286 ATTGCTGCTG
Statistics
Matches: 174, Mismatches: 44, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
6 7 0.04
7 3 0.02
8 3 0.02
9 145 0.83
12 16 0.09
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (9 bp):
CTACTGCTA
Found at i:16305079 original size:21 final size:21
Alignment explanation
Indices: 16305053--16305291 Score: 120
Period size: 21 Copynumber: 11.5 Consensus size: 21
16305043 ACTGCTACTG
16305053 CTACTACTGCTATTACTGCTA
1 CTACTACTGCTATTACTGCTA
* *
16305074 CTACTACTACTACAATTATTGCTA
1 CTACTACTGCT---ATTACTGCTA
* * *
16305098 CTGCTACTACTACT-CTTGCTA
1 CTACTACTGCTATTAC-TGCTA
*
16305119 CTAGTGCTACTGCTGTTACTG---
1 CTA---CTACTGCTATTACTGCTA
*
16305140 CTACTACTGCTGTTACTGCT-
1 CTACTACTGCTATTACTGCTA
* *
16305160 C--CTATTGCTACTACTGCTA
1 CTACTACTGCTATTACTGCTA
*
16305179 CTACTACTGCTAGTACTGCTA
1 CTACTACTGCTATTACTGCTA
* *
16305200 CTACTACTGC---TGCTACTA
1 CTACTACTGCTATTACTGCTA
* * * *
16305218 CTACTATTACTATTGCTACTA
1 CTACTACTGCTATTACTGCTA
* * * *
16305239 CTACTACTGTTACTACTACTT
1 CTACTACTGCTATTACTGCTA
* * * *
16305260 CTGCTACTGCTACTGCTACTA
1 CTACTACTGCTATTACTGCTA
*
16305281 CTACTATTGCT
1 CTACTACTGCT
16305292 GCTGCCACAC
Statistics
Matches: 172, Mismatches: 30, Indels: 32
0.74 0.13 0.14
Matches are distributed among these distances:
18 43 0.25
19 1 0.01
20 1 0.01
21 97 0.56
24 29 0.17
25 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (21 bp):
CTACTACTGCTATTACTGCTA
Found at i:16305144 original size:36 final size:37
Alignment explanation
Indices: 16305045--16305282 Score: 190
Period size: 36 Copynumber: 6.7 Consensus size: 37
16305035 ATGCTATCAC
* * *
16305045 TGCTACTGCTACTACTGCTATTACTGCTACTACTAC-
1 TGCTACTACTGCTACTGCTACTACTGCTACTACTACT
* * * * *
16305081 TACTAC-AAT--TATTGCTACTGCTACTACTACT-CT
1 TGCTACTACTGCTACTGCTACTACTGCTACTACTACT
* ** *
16305114 TGCTACTAGTGCTACTGCTGTTACTGCTACTACTGC-
1 TGCTACTACTGCTACTGCTACTACTGCTACTACTACT
* * * *
16305150 TGTTACTGCTCCTATTGCTACTACTGCTACTACTAC-
1 TGCTACTACTGCTACTGCTACTACTGCTACTACTACT
* * *
16305186 TGCTAGTACTGCTACTACTACTGCTGCTACTACTACT
1 TGCTACTACTGCTACTGCTACTACTGCTACTACTACT
* * *
16305223 AT--TACTATTGCTACTACTACTACTGTTACTACTACT
1 -TGCTACTACTGCTACTGCTACTACTGCTACTACTACT
*
16305259 T-CTGCTACTGCTACTGCTACTACT
1 TGCTACTACTGCTACTGCTACTACT
16305283 ACTATTGCTG
Statistics
Matches: 158, Mismatches: 36, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
32 1 0.01
33 23 0.15
34 2 0.01
35 2 0.01
36 128 0.81
37 1 0.01
38 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (37 bp):
TGCTACTACTGCTACTGCTACTACTGCTACTACTACT
Found at i:16305291 original size:15 final size:15
Alignment explanation
Indices: 16305043--16305286 Score: 139
Period size: 15 Copynumber: 15.9 Consensus size: 15
16305033 TAATGCTATC
*
16305043 ACTGCTACTGCTACT
1 ACTGCTACTACTACT
* *
16305058 ACTGCTATTACTGCT
1 ACTGCTACTACTACT
*
16305073 ACTACTACTACTACAATT
1 ACTGCTACTACTAC---T
* *
16305091 ATTGCTACTGCTACT
1 ACTGCTACTACTACT
* *
16305106 ACTACT-CTTGCTACT
1 ACTGCTAC-TACTACT
* * **
16305121 AGTGCTACTGCTGTT
1 ACTGCTACTACTACT
*
16305136 ACTGCTACTACTGCTGTT
1 ACTGCTACTACTAC---T
* * *
16305154 ACTGCTCCTATTGCT
1 ACTGCTACTACTACT
* *
16305169 ACTACTGCTACTACT
1 ACTGCTACTACTACT
* *
16305184 ACTGCTAGTACTGCT
1 ACTGCTACTACTACT
* * *
16305199 ACTACTACTGCTGCT
1 ACTGCTACTACTACT
* *
16305214 ACTACTACTATTACT
1 ACTGCTACTACTACT
*
16305229 ATTGCTACTACTACT
1 ACTGCTACTACTACT
*
16305244 ACTGTTACTACTACT
1 ACTGCTACTACTACT
* *
16305259 TCTGCTACTGCTACT
1 ACTGCTACTACTACT
* *
16305274 GCTACTACTACTA
1 ACTGCTACTACTA
16305287 TTGCTGCTGC
Statistics
Matches: 176, Mismatches: 45, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
14 1 0.01
15 149 0.85
16 1 0.01
18 25 0.14
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (15 bp):
ACTGCTACTACTACT
Found at i:16305294 original size:24 final size:24
Alignment explanation
Indices: 16305044--16305280 Score: 148
Period size: 24 Copynumber: 9.9 Consensus size: 24
16305034 AATGCTATCA
* *
16305044 CTGCTACTGCTACTACTGCTATTA
1 CTGCTACTGCTACTACTACTATTG
* * *
16305068 CTGCTACTACTACTACTACAATTA
1 CTGCTACTGCTACTACTACTATTG
* *
16305092 TTGCTACTGCTACTACTACTCTTG
1 CTGCTACTGCTACTACTACTATTG
* * * ** *
16305116 CTACTAGTGCTACTGCTGTTACTG
1 CTGCTACTGCTACTACTACTATTG
* * *
16305140 CTACTACTGCTGTTACTGCTCCTATTG
1 CTGCTACTGC---TACTACTACTATTG
*
16305167 CTACTACTGCTACTACTAC---TG
1 CTGCTACTGCTACTACTACTATTG
16305188 CTAG-TACTGCTACTACTAC---TG
1 CT-GCTACTGCTACTACTACTATTG
* *
16305209 CTGCTACTACTACTATTACTATTG
1 CTGCTACTGCTACTACTACTATTG
* *
16305233 CTACTACTACTACTGTTACTACTACTT-
1 CTGCTACTGCTAC---TACTACTA-TTG
*
16305260 CTGCTACTGCTACTGCTACTA
1 CTGCTACTGCTACTACTACTA
16305281 CTACTATTGC
Statistics
Matches: 171, Mismatches: 30, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
20 1 0.01
21 36 0.21
24 93 0.54
27 39 0.23
28 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (24 bp):
CTGCTACTGCTACTACTACTATTG
Found at i:16305424 original size:18 final size:19
Alignment explanation
Indices: 16305403--16305454 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
16305393 CACTATCATT
*
16305403 ACCACAATAACCACCA-CC
1 ACCACCATAACCACCATCC
16305421 ACCACCATAACCA-CATCC
1 ACCACCATAACCACCATCC
*
16305439 ACCACCATCACCACCA
1 ACCACCATAACCACCA
16305455 ACACGACAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 2 0.07
18 26 0.87
19 2 0.07
ACGTcount: A:0.40, C:0.52, G:0.00, T:0.08
Consensus pattern (19 bp):
ACCACCATAACCACCATCC
Found at i:16307779 original size:20 final size:20
Alignment explanation
Indices: 16307754--16307826 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
16307744 CGTTATATTT
16307754 CTTTGCTTTGCTTTGTTTTG
1 CTTTGCTTTGCTTTGTTTTG
16307774 CTTTGCTTTGCTTTG-TTTG
1 CTTTGCTTTGCTTTGTTTTG
** * * *
16307793 -TTTTATGTTGCTTTATATTA
1 CTTTGCT-TTGCTTTGTTTTG
16307813 CTTTGCTTTGCTTT
1 CTTTGCTTTGCTTT
16307827 ACTTTATATT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
18 4 0.09
19 11 0.26
20 24 0.56
21 4 0.09
ACGTcount: A:0.05, C:0.14, G:0.16, T:0.64
Consensus pattern (20 bp):
CTTTGCTTTGCTTTGTTTTG
Found at i:16307828 original size:15 final size:15
Alignment explanation
Indices: 16307754--16307831 Score: 72
Period size: 15 Copynumber: 5.3 Consensus size: 15
16307744 CGTTATATTT
*
16307754 CTTTGCTTTGCTTTG
1 CTTTGCTTTGCTTTA
* *
16307769 TTTTGCTTTGCTTTG
1 CTTTGCTTTGCTTTA
*
16307784 CTTTG-TTTGTTTTA
1 CTTTGCTTTGCTTTA
*
16307798 -TGTTGCTTT-ATATTA
1 CT-TTGCTTTGCT-TTA
16307813 CTTTGCTTTGCTTTA
1 CTTTGCTTTGCTTTA
16307828 CTTT
1 CTTT
16307832 ATATTTCTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
13 1 0.02
14 11 0.21
15 38 0.73
16 2 0.04
ACGTcount: A:0.06, C:0.14, G:0.15, T:0.64
Consensus pattern (15 bp):
CTTTGCTTTGCTTTA
Found at i:16307841 original size:20 final size:19
Alignment explanation
Indices: 16307800--16307863 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
16307790 TTGTTTTATG
* *
16307800 TTGCTTTATATTACTTTGCT
1 TTGCTTTCTATTA-TTTTCT
16307820 TTGCTTTACT-TTATATTTCT
1 TTGCTTT-CTATTAT-TTTCT
16307840 TTGCTTTCTATTATTTT-T
1 TTGCTTTCTATTATTTTCT
16307858 TTGCTT
1 TTGCTT
16307864 CTAGTGAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 7 0.18
19 6 0.15
20 25 0.64
21 1 0.03
ACGTcount: A:0.12, C:0.14, G:0.08, T:0.66
Consensus pattern (19 bp):
TTGCTTTCTATTATTTTCT
Found at i:16307846 original size:5 final size:5
Alignment explanation
Indices: 16307754--16307831 Score: 63
Period size: 5 Copynumber: 15.8 Consensus size: 5
16307744 CGTTATATTT
* * *
16307754 CTTTG CTTTG CTTTG TTTTG CTTTG CTTTG CTTTG -TTTG -TTTT ATGTTG
1 CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CT-TTG
* * *
16307803 CTTT- ATATTA CTTTG CTTTG CTTTA CTTT
1 CTTTG CT-TTG CTTTG CTTTG CTTTG CTTT
16307832 ATATTTCTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
4 8 0.13
5 48 0.80
6 4 0.07
ACGTcount: A:0.06, C:0.14, G:0.15, T:0.64
Consensus pattern (5 bp):
CTTTG
Found at i:16308054 original size:25 final size:28
Alignment explanation
Indices: 16307998--16308055 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 28
16307988 TGGATTTGAT
* *
16307998 TTATTTAATGATTATTTTTATTTAATTA
1 TTATTTAATGATTATTGTTATTTAATAA
16308026 -TATTT-AT-ATTATTGTT-TTTAATAA
1 TTATTTAATGATTATTGTTATTTAATAA
16308050 TTATTT
1 TTATTT
16308056 TTCCTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 7 0.26
25 13 0.48
26 2 0.07
27 5 0.19
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (28 bp):
TTATTTAATGATTATTGTTATTTAATAA
Found at i:16310397 original size:15 final size:15
Alignment explanation
Indices: 16310360--16310400 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
16310350 TTGCTTTGCT
*
16310360 TTGCTTTACTTTATA
1 TTGCTTTGCTTTATA
*
16310375 TTACTTTGCTTTATA
1 TTGCTTTGCTTTATA
16310390 TTGCTTTGCTT
1 TTGCTTTGCTT
16310401 CATCATTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.61
Consensus pattern (15 bp):
TTGCTTTGCTTTATA
Found at i:16312815 original size:5 final size:5
Alignment explanation
Indices: 16312807--16313020 Score: 105
Period size: 5 Copynumber: 41.4 Consensus size: 5
16312797 GACAATATAA
* * ** * *
16312807 AAAGC AAAGC AAAGC AAAAC AATATC AATATA AAAGC AAAGC AAAAC AAAGT
1 AAAGC AAAGC AAAGC AAAGC AA-AGC AA-AGC AAAGC AAAGC AAAGC AAAGC
* ** * **
16312859 AAAGC ACAA-C AAAGT AATATAA AAAGC AAAGC AAAGC AAAAC AATATAA
1 AAAGC A-AAGC AAAGC AA-A-GC AAAGC AAAGC AAAGC AAAGC AA-A-GC
** * * *
16312908 AAAGC AAAGC AAAGC AAAATA AAAGC AAAGT AAAGC AAAGA AAAAC AAAGC
1 AAAGC AAAGC AAAGC -AAAGC AAAGC AAAGC AAAGC AAAGC AAAGC AAAGC
* *
16312959 AAAGC ACAA-C GAAGC AAAGC AAAGC ATAGC ACAA-C ACAACGC --AGC
1 AAAGC A-AAGC AAAGC AAAGC AAAGC AAAGC A-AAGC A-AA-GC AAAGC
*
16313004 AAAGC AAAGC GAAGC AA
1 AAAGC AAAGC AAAGC AA
16313021 CATAAAAAGC
Statistics
Matches: 160, Mismatches: 34, Indels: 30
0.71 0.15 0.13
Matches are distributed among these distances:
3 2 0.01
4 5 0.03
5 126 0.79
6 21 0.13
7 6 0.04
ACGTcount: A:0.62, C:0.18, G:0.14, T:0.06
Consensus pattern (5 bp):
AAAGC
Found at i:16312926 original size:27 final size:27
Alignment explanation
Indices: 16312674--16312926 Score: 205
Period size: 27 Copynumber: 9.7 Consensus size: 27
16312664 AAAGTAAAGT
* *
16312674 AAAGCAAAGCAAAGCAGAGCAATATAA
1 AAAGCAAAGCAAAGCAAAACAATATAA
* * *
16312701 AAAGCAAAGAAAATCAAAGCAATATAA
1 AAAGCAAAGCAAAGCAAAACAATATAA
*
16312728 AAAGCAAAGCAAA-TAAAAGCAATAT--
1 AAAGCAAAGCAAAGCAAAA-CAATATAA
16312753 AAAGCAAAGCAAAGAACAACACATCAATATAA
1 AAAGCAAAGCAAAG--CAA-A-A-CAATATAA
**
16312785 AAAGC--A-C--AGCACGACAATATAA
1 AAAGCAAAGCAAAGCAAAACAATATAA
*
16312807 AAAGCAAAGCAAAGCAAAACAATATCA
1 AAAGCAAAGCAAAGCAAAACAATATAA
* **
16312834 ATATAAAAGCAAAGCAAAACAA-AGT--
1 AAAGCAAAGCAAAGCAAAACAATA-TAA
**
16312859 AAAGC--A-C-AA-CAAAGTAATATAA
1 AAAGCAAAGCAAAGCAAAACAATATAA
16312881 AAAGCAAAGCAAAGCAAAACAATATAA
1 AAAGCAAAGCAAAGCAAAACAATATAA
16312908 AAAGCAAAGCAAAGCAAAA
1 AAAGCAAAGCAAAGCAAAA
16312927 TAAAAGCAAA
Statistics
Matches: 181, Mismatches: 23, Indels: 44
0.73 0.09 0.18
Matches are distributed among these distances:
20 7 0.04
21 3 0.02
22 19 0.10
23 2 0.01
24 2 0.01
25 19 0.10
26 6 0.03
27 106 0.59
28 2 0.01
29 2 0.01
30 8 0.04
32 5 0.03
ACGTcount: A:0.63, C:0.15, G:0.12, T:0.09
Consensus pattern (27 bp):
AAAGCAAAGCAAAGCAAAACAATATAA
Found at i:16314091 original size:5 final size:5
Alignment explanation
Indices: 16314081--16314138 Score: 50
Period size: 5 Copynumber: 11.8 Consensus size: 5
16314071 CTTTATATTA
* * *
16314081 CTTTG CTTTG CTTTG CTTT- ATATTG CTTTG CTTT- ATATTA CTTTG CTTTG
1 CTTTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTTTG CT-TTG CTTTG CTTTG
16314131 -TTTG CTTT
1 CTTTG CTTT
16314139 ATGTTGAAGC
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
4 6 0.14
5 35 0.81
6 2 0.05
ACGTcount: A:0.09, C:0.16, G:0.14, T:0.62
Consensus pattern (5 bp):
CTTTG
Found at i:16314094 original size:20 final size:20
Alignment explanation
Indices: 16314069--16314130 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
16314059 TTATTAATAC
16314069 TGCTTTATATTACTTTGCTT
1 TGCTTTATATTACTTTGCTT
*
16314089 TGCTTTGCT-TTA-TATTGCTT
1 TGCTTT-ATATTACT-TTGCTT
16314109 TGCTTTATATTACTTTGCTT
1 TGCTTTATATTACTTTGCTT
16314129 TG
1 TG
16314131 TTTGCTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
19 2 0.06
20 32 0.89
21 2 0.06
ACGTcount: A:0.13, C:0.15, G:0.13, T:0.60
Consensus pattern (20 bp):
TGCTTTATATTACTTTGCTT
Found at i:16314099 original size:15 final size:15
Alignment explanation
Indices: 16314088--16314138 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
16314078 TTACTTTGCT
16314088 TTGCTTTGCTTTATA
1 TTGCTTTGCTTTATA
16314103 TTGCTTTGCTTTATA
1 TTGCTTTGCTTTATA
* *
16314118 TTACTTTGCTTTGT-
1 TTGCTTTGCTTTATA
16314132 TTGCTTT
1 TTGCTTT
16314139 ATGTTGAAGC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
14 6 0.18
15 27 0.82
ACGTcount: A:0.10, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTGCTTTGCTTTATA
Found at i:16314200 original size:17 final size:16
Alignment explanation
Indices: 16314180--16314294 Score: 88
Period size: 17 Copynumber: 6.7 Consensus size: 16
16314170 TAAGCCCAAT
*
16314180 TTTTAATTCTAGATTTA
1 TTTTAATT-TAAATTTA
*
16314197 TTTTAAGTTTAAATTTGT
1 TTTTAA-TTTAAATTT-A
16314215 TTTTAAATTTAAATTTA
1 TTTT-AATTTAAATTTA
* *
16314232 TTTTAAGATT-AATTCAA
1 TTTTAA-TTTAAATT-TA
16314249 TTTTAAATTTAAATTTA
1 TTTT-AATTTAAATTTA
*
16314266 ATTTAAGTTTAAATTTA
1 TTTTAA-TTTAAATTTA
*
16314283 TTCTAAATTTAA
1 TT-TTAATTTAA
16314295 TGAAGAAGTC
Statistics
Matches: 79, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
16 8 0.10
17 45 0.57
18 24 0.30
19 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.56
Consensus pattern (16 bp):
TTTTAATTTAAATTTA
Found at i:16314225 original size:6 final size:6
Alignment explanation
Indices: 16314216--16314294 Score: 62
Period size: 6 Copynumber: 13.8 Consensus size: 6
16314206 TAAATTTGTT
* * *
16314216 TTTAAA TTTAAA TTT-AT TTTAAGA -TT-AA TTCAAT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA
*
16314262 TTT-AA TTTAAG TTTAAA TTT--A TTCTAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAA
16314295 TGAAGAAGTC
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
4 4 0.07
5 12 0.21
6 38 0.67
7 3 0.05
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:16314258 original size:34 final size:35
Alignment explanation
Indices: 16314176--16314294 Score: 134
Period size: 34 Copynumber: 3.4 Consensus size: 35
16314166 AAATTAAGCC
* *
16314176 CAATTTTTAATTCTAGATTTATTTTAAGTTTAAATT
1 CAATTTTAAATT-TAAATTTATTTTAAGTTTAAATT
*** *
16314212 TGTTTTTAAATTTAAATTTATTTTAAGATT-AATT
1 CAATTTTAAATTTAAATTTATTTTAAGTTTAAATT
*
16314246 CAATTTTAAATTTAAATTTAATTTAAGTTTAAATT
1 CAATTTTAAATTTAAATTTATTTTAAGTTTAAATT
* *
16314281 -TATTCTAAATTTAA
1 CAATTTTAAATTTAA
16314295 TGAAGAAGTC
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
34 41 0.59
35 20 0.29
36 8 0.12
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (35 bp):
CAATTTTAAATTTAAATTTATTTTAAGTTTAAATT
Found at i:16314900 original size:3 final size:3
Alignment explanation
Indices: 16314892--16314972 Score: 126
Period size: 3 Copynumber: 27.0 Consensus size: 3
16314882 CAAATGACAT
16314892 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * *
16314940 TAA TAA TTT TAT TAA TAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
16314973 AAAAAGTCGA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:16316131 original size:59 final size:57
Alignment explanation
Indices: 16316060--16316247 Score: 182
Period size: 59 Copynumber: 3.2 Consensus size: 57
16316050 GACCCCTAAG
*
16316060 CTTTCCAAAAATTAAATTTTGACCCTTAAAC-TTCCAAAAATTACATTTTAACCCTTAAA
1 CTTT-CAAAAATTAAATTTTGACCC-TAAACTTTCC-AAAATTACATTTTAACCCTCAAA
* * * ** *
16316119 CTTCTTAAAAATTATATTTTTGCCCCCGAACTTTCCAAAATTACATTTTTACCCTCAAA
1 CTT-TCAAAAATTA-AATTTTGACCCTAAACTTTCCAAAATTACATTTTAACCCTCAAA
* * * * *
16316178 CTTTCCAAAATTACATTCTTGATCCTAAACTTTCCAAAATTACATTTTTGATCCT-AAA
1 CTTTCAAAAATTAAATT-TTGACCCTAAACTTTCCAAAATTACA-TTTTAACCCTCAAA
*
16316236 CTTTCCAAAATT
1 CTTTCAAAAATT
16316248 TACCATTTGA
Statistics
Matches: 107, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
57 2 0.02
58 45 0.42
59 46 0.43
60 14 0.13
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (57 bp):
CTTTCAAAAATTAAATTTTGACCCTAAACTTTCCAAAATTACATTTTAACCCTCAAA
Found at i:16316246 original size:29 final size:29
Alignment explanation
Indices: 16316023--16316304 Score: 213
Period size: 29 Copynumber: 9.6 Consensus size: 29
16316013 CCCCGAAGGT
*
16316023 CCCTAAA-TTATCCAAAAAT-CATGTTTTGA
1 CCCTAAACTT-TCCAAAATTACAT-TTTTGA
* *
16316052 CCCCTAAGCTTTCCAAAAATTA-AATTTTGA
1 -CCCTAAACTTTCC-AAAATTACATTTTTGA
*
16316082 CCCTTAAAC-TTCCAAAAATTACA-TTTTAA
1 CCC-TAAACTTTCC-AAAATTACATTTTTGA
** * *
16316111 CCCTTAAACTTCTTAAAAATTATATTTTTGC
1 CCC-TAAACTT-TCCAAAATTACATTTTTGA
**
16316142 CCCCGAACTTTCCAAAATTACATTTTT-A
1 CCCTAAACTTTCCAAAATTACATTTTTGA
*
16316170 CCCTCAAACTTTCCAAAATTACATTCTTGA
1 CCCT-AAACTTTCCAAAATTACATTTTTGA
*
16316200 TCCTAAACTTTCCAAAATTACATTTTTGA
1 CCCTAAACTTTCCAAAATTACATTTTTGA
*
16316229 TCCTAAACTTTCCAAAATTTACCA--TTTGA
1 CCCTAAACTTTCCAAAA-TTA-CATTTTTGA
* * * *
16316258 CCCCCAAAC-ATCCTAACATTGCATTTTTGA
1 -CCCTAAACTTTCC-AAAATTACATTTTTGA
* *
16316288 CCCTGAATTTTCCAAAA
1 CCCTAAACTTTCCAAAA
16316305 AATCACCATT
Statistics
Matches: 204, Mismatches: 31, Indels: 35
0.76 0.11 0.13
Matches are distributed among these distances:
28 5 0.02
29 123 0.60
30 58 0.28
31 18 0.09
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (29 bp):
CCCTAAACTTTCCAAAATTACATTTTTGA
Found at i:16316345 original size:59 final size:59
Alignment explanation
Indices: 16316032--16316360 Score: 177
Period size: 59 Copynumber: 5.6 Consensus size: 59
16316022 TCCCTAAATT
* * * **
16316032 ATCCAAAAA-T-CATGTTTTGACCCCTAAGCTTTCCAAAAATTA-AATTTTGACCCTTAAAC
1 ATCCAAAAATTACAT-TTTTGA-CCCTAAACTTTCCAAAAATCACCA-TTTGACCCCCAAAC
* * * * * *
16316091 TTCCAAAAATTACA-TTTTAACCCTTAAAC-TTCTTAAAAATTA-TATTTTTG-CCCCCGAAC
1 ATCCAAAAATTACATTTTTGACCC-TAAACTTTC-CAAAAATCACCA--TTTGACCCCCAAAC
* * * *
16316150 TTTCC-AAAATTACATTTTT-ACCCTCAAACTTTCC-AAAATTA-CATTCTTGA-TCCTAAAC
1 -ATCCAAAAATTACATTTTTGACCCT-AAACTTTCCAAAAATCACCA-T-TTGACCCCCAAAC
* * * *
16316208 TTTCC-AAAATTACATTTTTGATCCTAAACTTTCCAAAATTTACCATTTGACCCCCAAAC
1 -ATCCAAAAATTACATTTTTGACCCTAAACTTTCCAAAAATCACCATTTGACCCCCAAAC
* * * * * *
16316267 ATCCTAACATTGCATTTTTGACCCTGAATTTTCCAAAAAATCACCATTTTG-CCCCCGAAC
1 ATCCAAAAATTACATTTTTGACCCTAAACTTTCC-AAAAATCACCA-TTTGACCCCCAAAC
* *
16316327 ATCCAAAAATTACA-TTTTGTCCCTAGAC-TTCCAA
1 ATCCAAAAATTACATTTTTGACCCTAAACTTTCCAA
16316361 CAATTACTAT
Statistics
Matches: 219, Mismatches: 33, Indels: 38
0.76 0.11 0.13
Matches are distributed among these distances:
57 4 0.02
58 62 0.28
59 100 0.46
60 47 0.21
61 6 0.03
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (59 bp):
ATCCAAAAATTACATTTTTGACCCTAAACTTTCCAAAAATCACCATTTGACCCCCAAAC
Found at i:16324120 original size:15 final size:15
Alignment explanation
Indices: 16324102--16324139 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
16324092 CTTTTCTTTG
16324102 CTTTGCTTTATATTA
1 CTTTGCTTTATATTA
* *
16324117 CTTTCCTTTATATTG
1 CTTTGCTTTATATTA
16324132 CTTTGCTT
1 CTTTGCTT
16324140 CATCGTTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.13, C:0.18, G:0.08, T:0.61
Consensus pattern (15 bp):
CTTTGCTTTATATTA
Found at i:16324698 original size:5 final size:5
Alignment explanation
Indices: 16324688--16324717 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
16324678 ATCTATTGCT
*
16324688 CTTTG CTTTG CTTTG CTTTT CTTTG CTTTG
1 CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG
16324718 ATTTATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.20, G:0.17, T:0.63
Consensus pattern (5 bp):
CTTTG
Found at i:16324711 original size:15 final size:17
Alignment explanation
Indices: 16324683--16324717 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
16324673 TGATCATCTA
16324683 TTGCTCTTTGCTTTGCT
1 TTGCTCTTTGCTTTGCT
16324700 TTGCT-TTT-CTTTGCT
1 TTGCTCTTTGCTTTGCT
16324715 TTG
1 TTG
16324718 ATTTATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 3 0.17
17 5 0.28
ACGTcount: A:0.00, C:0.20, G:0.17, T:0.63
Consensus pattern (17 bp):
TTGCTCTTTGCTTTGCT
Found at i:16324936 original size:611 final size:612
Alignment explanation
Indices: 16323634--16326053 Score: 4023
Period size: 611 Copynumber: 4.0 Consensus size: 612
16323624 AGCAAGTCAC
* * *
16323634 AGTGGCAGATTTTGGGACGAAGCTTTGGGGCCTAAAAAAATTTTCAGAGGAGGAAGATAGTGCTA
1 AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
* *
16323699 ATTTTTCACATTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
66 ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
*
16323764 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGAAAATT
131 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
* *
16323829 TTCAATTCAAAAGAACTTCTCTAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAATATTT
196 TTCAATTCAAAAGAACTTCTCAAATTTCACTAC-CGTCTCATAATTTTGATTTCCACTAAAATTT
16323894 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGA
260 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGA
16323959 AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
325 AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
16324024 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
390 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
16324089 TTGC--T--TTT-C----TTTGCTTTGCTTTATATTACTTTCCTTTATATTGCTTTGCTTCATCG
455 TTGCTTTGCTTTGCTTTTTTTGCTTTGCTTTATATTACTTTCCTTTATATTGCTTTGCTTCATCG
16324145 TTGTAAAGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGAC
520 TTGTAAAGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGAC
* **
16324210 CGCTATTGCTCCATTAAGAGCAACTCAC
585 CGCTGTTGCTCCATTAAGAGCAACTCGT
* *
16324238 AGTGGCAGATTTTGGGGCGAAGTTTTGGGGCCTAATAAAATTTTCAAACGAGGAAGATAGTGCTA
1 AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
16324303 ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
66 ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
*
16324368 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTAAAGTAAAAACTGGAAATT
131 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
* *
16324433 TTCAGTTCAAAAGAACTTCTCAAATTTCACTA-C-TCTCATAATTTTGATTTCCAGTAAAATTTA
196 TTCAATTCAAAAGAACTTCTCAAATTTCACTACCGTCTCATAATTTTGATTTCCACTAAAATTTA
*
16324496 ACTACAAAAATTAATAATTCCCATGAAAATAAAAGCATAAACTCCAATAACTAATGGTATCCGAA
261 ACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGAA
16324561 GGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTTT
326 GGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTTT
* * *
16324626 TCCTTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGATCATCTATTGCTCTT
391 CCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCTT
*
16324691 TGCTTTGCTTTGCTTTTCTTTGCTTTGATTTATATTACTTTCCTTTATATTGCTTTGCTTCATCG
456 TGCTTTGCTTTGCTTTT-TTTGCTTTGCTTTATATTACTTTCCTTTATATTGCTTTGCTTCATCG
*
16324756 TTGTAAAGATACATACATACATCTGCAAACAAAATCTACATCAACAAAATTTGCTTTGCAAAGAC
520 TTGTAAAGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGAC
16324821 CGCTGTTGCTCCATTAAGAGCAACTCGT
585 CGCTGTTGCTCCATTAAGAGCAACTCGT
*
16324849 AGTGGCAGATTTTGGGATGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
1 AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
*
16324914 ATTATTCACGTTAATGTGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
66 ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
16324979 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
131 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
* *
16325044 TTCAGTTCAAAAGAACTTCTCAAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAATATTT
196 TTCAATTCAAAAGAACTTCTCAAATTTCACTAC-CGTCTCATAATTTTGATTTCCACTAAAATTT
* *
16325109 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATACACTCCAATAACTAATGCTATCCGA
260 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGA
*
16325174 AGGACTTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
325 AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
16325239 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
390 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
*
16325304 TTGCTTTGCTTTGC------T--TTT-C--T-T-TT-CTTTGCTTTATATTGCTTTGCTTCATCG
455 TTGCTTTGCTTTGCTTTTTTTGCTTTGCTTTATATTACTTTCCTTTATATTGCTTTGCTTCATCG
16325355 TTGTAAAGATACATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAA
520 TTGTAAAG----ATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAA
* *
16325420 AGACCGCTGTTGCTGCATTAAGAGCAACTAGT
581 AGACCGCTGTTGCTCCATTAAGAGCAACTCGT
*
16325452 AGTGGCAGATTTTGGGGCGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGA-GAAGATAGTGCTA
1 AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
* *
16325516 ATT-TCTCACGTTAATATGCTTCTAACTCACTAGTCTTACTCTATCATGTATTGGCTCTAGCCTA
66 ATTAT-TCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTA
* * *
16325580 CTTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTTAGAATTGAAGTAAAAATTGGAAAT
130 CTTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAAT
* *
16325645 TTTCAATTGAAAAGAACTTCTCAAATTTCATTACTCGTCTCATAATTTTGATTTCCACTAAAATT
195 TTTCAATTCAAAAGAACTTCTCAAATTTCACTAC-CGTCTCATAATTTTGATTTCCACTAAAATT
* * *
16325710 TAACTGCAAAAATTAATAATTCCCATGAAAACAAAAACATAAACTCCAATAACAAATGGTATCCG
259 TAACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCG
* ** *
16325775 AAGGACCTAA-CATTGCCAAATCCTACAACTTTTGTAACTCTTAAGCTTCCGTTTTCTCTACCTT
324 AAGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTT
* *
16325839 TTCCCCTCAATTTTTCTTATAAAAATCTATCTCTATTATTTAAACATATTGGTCATCTATTGCTC
389 TTCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTC
* * * * * * **
16325904 TTTACTTTGCTTTGCTTTATATTACTTTGCTTTATGTTTCTTTACTTTATATTGCTTTAATTCAT
454 TTTGCTTTGCTTTGCTTT-TTTTGCTTTGCTTTATATTACTTTCCTTTATATTGCTTTGCTTCAT
* *
16325969 CGTTGTAAAGATACATACATATATCTGCAAACAAAATCTATAGCAACAAAATTTGCTTTGCAAAG
518 CGTTGTAAAGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAG
16326034 ACCGCTGTTGCTCCATTAAG
583 ACCGCTGTTGCTCCATTAAG
16326054 TCATTGTCAC
Statistics
Matches: 1711, Mismatches: 72, Indels: 58
0.93 0.04 0.03
Matches are distributed among these distances:
599 35 0.02
600 2 0.00
601 351 0.21
602 266 0.16
603 132 0.08
604 216 0.13
605 6 0.00
606 1 0.00
607 1 0.00
608 1 0.00
610 3 0.00
611 358 0.21
612 72 0.04
613 2 0.00
614 230 0.13
615 2 0.00
616 33 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (612 bp):
AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
TTCAATTCAAAAGAACTTCTCAAATTTCACTACCGTCTCATAATTTTGATTTCCACTAAAATTTA
ACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGAA
GGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTTT
CCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCTT
TGCTTTGCTTTGCTTTTTTTGCTTTGCTTTATATTACTTTCCTTTATATTGCTTTGCTTCATCGT
TGTAAAGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGACC
GCTGTTGCTCCATTAAGAGCAACTCGT
Found at i:16325312 original size:5 final size:5
Alignment explanation
Indices: 16325302--16325349 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
16325292 ATCTATTGCT
* * *
16325302 CTTTG CTTTG CTTTG CTTTT CTTTT CTTTG CTTT- ATATTG CTTTG CTT
1 CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CT-TTG CTTTG CTT
16325350 CATCGTTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
4 1 0.03
5 35 0.95
6 1 0.03
ACGTcount: A:0.04, C:0.19, G:0.12, T:0.65
Consensus pattern (5 bp):
CTTTG
Found at i:16325734 original size:602 final size:606
Alignment explanation
Indices: 16323634--16326053 Score: 4010
Period size: 601 Copynumber: 4.0 Consensus size: 606
16323624 AGCAAGTCAC
* * *
16323634 AGTGGCAGATTTTGGGACGAAGCTTTGGGGCCTAAAAAAATTTTCAGAGGAGGAAGATAGTGCTA
1 AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
* *
16323699 ATTTTTCACATTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
66 ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
*
16323764 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGAAAATT
131 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
* *
16323829 TTCAATTCAAAAGAACTTCTCTAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAATATTT
196 TTCAATTCAAAAGAACTTCTCAAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAAAATTT
16323894 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGA
261 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGA
16323959 AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
326 AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
16324024 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
391 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
*
16324089 TTGCTTTTCTTTG---CTTTGCTTTATATTACTTTCCTTTATATTGCTTTGCTTCATCGTTGTAA
456 TTGCTTTGCTTTGCTTCTTTGC-TTATATTACTTTCCTTTATATTGCTTTGCTTCATCGTTGTAA
*
16324151 AGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGACCGCTAT
520 AGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGACCGCTGT
*
16324216 TGCTCCATTAAGAGCAACTCA-C
585 TGCTCCATTAAGAGCAACT-AGT
* *
16324238 AGTGGCAGATTTTGGGGCGAAGTTTTGGGGCCTAATAAAATTTTCAAACGAGGAAGATAGTGCTA
1 AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
16324303 ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
66 ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
*
16324368 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTAAAGTAAAAACTGGAAATT
131 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
* *
16324433 TTCAGTTCAAAAGAACTTCTCAAATTTCACTA--C-TCTCATAATTTTGATTTCCAGTAAAATTT
196 TTCAATTCAAAAGAACTTCTCAAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAAAATTT
*
16324495 AACTACAAAAATTAATAATTCCCATGAAAATAAAAGCATAAACTCCAATAACTAATGGTATCCGA
261 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGA
16324560 AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
326 AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
* * *
16324625 TTCCTTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGATCATCTATTGCTCT
391 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
16324690 TTGCTTTGCTTTGCTTTTCTTTGCTTTGATTTATATTACTTTCCTTTATATTGCTTTGCTTCATC
456 TTGCTTTGCTTTGC--TTCTTTGC------TTATATTACTTTCCTTTATATTGCTTTGCTTCATC
*
16324755 GTTGTAAAGATACATACATACATCTGCAAACAAAATCTACATCAACAAAATTTGCTTTGCAAAGA
513 GTTGTAAAGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGA
*
16324820 CCGCTGTTGCTCCATTAAGAGCAACTCGT
578 CCGCTGTTGCTCCATTAAGAGCAACTAGT
*
16324849 AGTGGCAGATTTTGGGATGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
1 AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
*
16324914 ATTATTCACGTTAATGTGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
66 ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
16324979 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
131 TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
* *
16325044 TTCAGTTCAAAAGAACTTCTCAAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAATATTT
196 TTCAATTCAAAAGAACTTCTCAAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAAAATTT
* *
16325109 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATACACTCCAATAACTAATGCTATCCGA
261 AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGA
*
16325174 AGGACTTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
326 AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
16325239 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
391 TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
*
16325304 TTGCTTTGCTTTGC-T-TTT-C-T-T-TT-CTTTGCTTTATATTGCTTTGCTTCATCGTTGTAAA
456 TTGCTTTGCTTTGCTTCTTTGCTTATATTACTTTCCTTTATATTGCTTTGCTTCATCGTTGTAAA
16325362 GATACATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGACCGC
521 G----ATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGACCGC
*
16325427 TGTTGCTGCATTAAGAGCAACTAGT
582 TGTTGCTCCATTAAGAGCAACTAGT
*
16325452 AGTGGCAGATTTTGGGGCGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGA-GAAGATAGTGCTA
1 AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
* *
16325516 ATT-TCTCACGTTAATATGCTTCTAACTCACTAGTCTTACTCTATCATGTATTGGCTCTAGCCTA
66 ATTAT-TCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTA
* * *
16325580 CTTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTTAGAATTGAAGTAAAAATTGGAAAT
130 CTTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAAT
* *
16325645 TTTCAATTGAAAAGAACTTCTCAAATTTCATTACTCGTCTCATAATTTTGATTTCCACTAAAATT
195 TTTCAATTCAAAAGAACTTCTCAAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAAAATT
* * *
16325710 TAACTGCAAAAATTAATAATTCCCATGAAAACAAAAACATAAACTCCAATAACAAATGGTATCCG
260 TAACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCG
* ** *
16325775 AAGGACCTAA-CATTGCCAAATCCTACAACTTTTGTAACTCTTAAGCTTCCGTTTTCTCTACCTT
325 AAGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTT
* *
16325839 TTCCCCTCAATTTTTCTTATAAAAATCTATCTCTATTATTTAAACATATTGGTCATCTATTGCTC
390 TTCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTC
* * * * **
16325904 TTTACTTTGCTTTGCTTTATATTACTTTGCTTTATGTTTCTTTACTTTATATTGCTTTAATTCAT
455 TTTGCTTTGCTTTGC------TT-CTTTGC-TTATATTACTTTCCTTTATATTGCTTTGCTTCAT
* *
16325969 CGTTGTAAAGATACATACATATATCTGCAAACAAAATCTATAGCAACAAAATTTGCTTTGCAAAG
512 CGTTGTAAAGATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAG
16326034 ACCGCTGTTGCTCCATTAAG
577 ACCGCTGTTGCTCCATTAAG
16326054 TCATTGTCAC
Statistics
Matches: 1711, Mismatches: 71, Indels: 60
0.93 0.04 0.03
Matches are distributed among these distances:
599 35 0.02
600 2 0.00
601 359 0.21
602 266 0.16
603 131 0.08
604 216 0.13
606 6 0.00
608 1 0.00
609 1 0.00
610 6 0.00
611 349 0.20
612 72 0.04
613 2 0.00
614 230 0.13
615 2 0.00
616 33 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (606 bp):
AGTGGCAGATTTTGGGACGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGGAAGATAGTGCTA
ATTATTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTACTGGCTCTAGCCTAC
TTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGGTCACAATTGAAGTAAAAACTGGAAATT
TTCAATTCAAAAGAACTTCTCAAATTTCACTACTCGTCTCATAATTTTGATTTCCACTAAAATTT
AACTACAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACTAATGGTATCCGA
AGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTATGTTTTCTCTATCTTT
TCCCCTCAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTATTGCTCT
TTGCTTTGCTTTGCTTCTTTGCTTATATTACTTTCCTTTATATTGCTTTGCTTCATCGTTGTAAA
GATACATACATACATCTGCAAACAAAATCTACAGCAACAAAATTTGCTTTGCAAAGACCGCTGTT
GCTCCATTAAGAGCAACTAGT
Found at i:16325931 original size:15 final size:15
Alignment explanation
Indices: 16325913--16325961 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
16325903 CTTTACTTTG
16325913 CTTTGCTTTATATTA
1 CTTTGCTTTATATTA
* *
16325928 CTTTGCTTTATGTTT
1 CTTTGCTTTATATTA
* *
16325943 CTTTACTTTATATTG
1 CTTTGCTTTATATTA
16325958 CTTT
1 CTTT
16325962 AATTCATCGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.14, C:0.14, G:0.08, T:0.63
Consensus pattern (15 bp):
CTTTGCTTTATATTA
Found at i:16325948 original size:20 final size:19
Alignment explanation
Indices: 16325902--16325951 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
16325892 CATCTATTGC
16325902 TCTTTACTTTGCTTTGCTT
1 TCTTTACTTTGCTTTGCTT
*
16325921 TATATTACTTTGCTTTATG-TT
1 TCT-TTACTTTGC-TT-TGCTT
16325942 TCTTTACTTT
1 TCTTTACTTT
16325952 ATATTGCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 2 0.08
20 16 0.62
21 6 0.23
22 2 0.08
ACGTcount: A:0.12, C:0.16, G:0.08, T:0.64
Consensus pattern (19 bp):
TCTTTACTTTGCTTTGCTT
Found at i:16329359 original size:15 final size:15
Alignment explanation
Indices: 16329321--16329374 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
16329311 ATCTTTTGCT
* *
16329321 CTTTGCATTGCTTTG
1 CTTTGCTTTGCTTTA
16329336 CTTTGCTTTGCTTTA
1 CTTTGCTTTGCTTTA
* *
16329351 CTTTTCTTT-ATATTA
1 CTTTGCTTTGCT-TTA
16329366 CTTTGCTTT
1 CTTTGCTTT
16329375 ATATTGCTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
14 1 0.03
15 32 0.97
ACGTcount: A:0.09, C:0.19, G:0.11, T:0.61
Consensus pattern (15 bp):
CTTTGCTTTGCTTTA
Found at i:16329374 original size:5 final size:5
Alignment explanation
Indices: 16329321--16329359 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
16329311 ATCTTTTGCT
* * *
16329321 CTTTG CATTG CTTTG CTTTG CTTTG CTTTA CTTTT CTTT
1 CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CTTTG CTTT
16329360 ATATTACTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.05, C:0.21, G:0.13, T:0.62
Consensus pattern (5 bp):
CTTTG
Found at i:16329375 original size:15 final size:15
Alignment explanation
Indices: 16329348--16329388 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
16329338 TTGCTTTGCT
*
16329348 TTACTTTTCTTTATA
1 TTACTTTGCTTTATA
16329363 TTACTTTGCTTTATA
1 TTACTTTGCTTTATA
*
16329378 TTGCTTTGCTT
1 TTACTTTGCTT
16329389 CCTCGTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (15 bp):
TTACTTTGCTTTATA
Found at i:16336399 original size:27 final size:27
Alignment explanation
Indices: 16336363--16336418 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
16336353 ATATAAAGTT
16336363 AAGCAAAGCAAGATAAAAAGCAAAGAA
1 AAGCAAAGCAAGATAAAAAGCAAAGAA
* * * *
16336390 AAGCAGAGCAATATAACAAGTAAAGAA
1 AAGCAAAGCAAGATAAAAAGCAAAGAA
16336417 AA
1 AA
16336419 TCAATATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.64, C:0.11, G:0.18, T:0.07
Consensus pattern (27 bp):
AAGCAAAGCAAGATAAAAAGCAAAGAA
Found at i:16336414 original size:22 final size:20
Alignment explanation
Indices: 16336384--16336440 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 20
16336374 GATAAAAAGC
* *
16336384 AAAGAAAAGCAGAGCAATAT
1 AAAGTAAAGCAAAGCAATAT
* *
16336404 AACAAGTAAAGAAAATCAATAT
1 -A-AAGTAAAGCAAAGCAATAT
16336426 AAAGTAAAGCAAAGC
1 AAAGTAAAGCAAAGC
16336441 TCAACACATC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 12 0.41
21 2 0.07
22 15 0.52
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (20 bp):
AAAGTAAAGCAAAGCAATAT
Found at i:16336497 original size:5 final size:5
Alignment explanation
Indices: 16336480--16336655 Score: 77
Period size: 5 Copynumber: 34.2 Consensus size: 5
16336470 GGCAATATAA
* * * *
16336480 AAAGC AAACC AAAGC AAAAC AATATC AATATC AAAGC AAAGC AAAGC AAAG-
1 AAAGC AAAGC AAAGC AAAGC AA-AGC AA-AGC AAAGC AAAGC AAAGC AAAGC
** * * * * *
16336531 AAAAA AAAGT AAAGC ACAGC AAATC ATATA-A AAAGC AAAGC AAAGC AAAAC
1 AAAGC AAAGC AAAGC AAAGC AAAGC A-A-AGC AAAGC AAAGC AAAGC AAAGC
** * ** * * *
16336582 AATATAA AAAGA AAAGC AAAATA AAAGC AAACC AAAGC AAAGA AAAAC
1 AA-A-GC AAAGC AAAGC -AAAGC AAAGC AAAGC AAAGC AAAGC AAAGC
* * *
16336630 AAAGC AAAGC ACAGC ACAGC ACAGC A
1 AAAGC AAAGC AAAGC AAAGC AAAGC A
16336656 CATTCATTAG
Statistics
Matches: 134, Mismatches: 29, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
4 4 0.03
5 109 0.81
6 17 0.13
7 4 0.03
ACGTcount: A:0.63, C:0.18, G:0.12, T:0.06
Consensus pattern (5 bp):
AAAGC
Found at i:16336586 original size:27 final size:27
Alignment explanation
Indices: 16336472--16336601 Score: 136
Period size: 27 Copynumber: 4.8 Consensus size: 27
16336462 CACAGCGCGG
*
16336472 CAATATAAAAAGCAAACCAAAGCAAAA
1 CAATATAAAAAGCAAAGCAAAGCAAAA
* * * *
16336499 CAATATCAATATCAAAGCAAAGCAAAG
1 CAATATAAAAAGCAAAGCAAAGCAAAA
* * * * *
16336526 CAAAGAAAAAAAAGTAAAGCACAGCAAAT
1 C-AA-TATAAAAAGCAAAGCAAAGCAAAA
16336555 C-ATATAAAAAGCAAAGCAAAGCAAAA
1 CAATATAAAAAGCAAAGCAAAGCAAAA
*
16336581 CAATATAAAAAGAAAAGCAAA
1 CAATATAAAAAGCAAAGCAAA
16336602 ATAAAAGCAA
Statistics
Matches: 81, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
26 20 0.25
27 42 0.52
28 2 0.02
29 17 0.21
ACGTcount: A:0.65, C:0.15, G:0.11, T:0.09
Consensus pattern (27 bp):
CAATATAAAAAGCAAAGCAAAGCAAAA
Found at i:16336592 original size:17 final size:17
Alignment explanation
Indices: 16336572--16336612 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
16336562 AAAGCAAAGC
*
16336572 AAAGCAAAA-CAATATAA
1 AAAGCAAAAGCAAAAT-A
16336589 AAAG-AAAAGCAAAATA
1 AAAGCAAAAGCAAAATA
16336605 AAAGCAAA
1 AAAGCAAA
16336613 CCAAAGCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.73, C:0.10, G:0.10, T:0.07
Consensus pattern (17 bp):
AAAGCAAAAGCAAAATA
Found at i:16337861 original size:27 final size:27
Alignment explanation
Indices: 16337808--16337875 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
16337798 TGATAGGTAG
*
16337808 ATTTAATT-TATTTAATGATTATTTTTT
1 ATTTAATTAT-TTTTATGATTATTTTTT
16337835 ATTTAATTATTTTTAT-ATTATTGTTTT
1 ATTTAATTATTTTTATGATTATT-TTTT
*
16337862 -TAATAATTATTTTT
1 AT-TTAATTATTTTT
16337876 CCTAAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
26 7 0.19
27 28 0.78
28 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (27 bp):
ATTTAATTATTTTTATGATTATTTTTT
Found at i:16340203 original size:25 final size:25
Alignment explanation
Indices: 16340174--16340231 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
16340164 GTCTATTGCT
16340174 CTTTGCTTTGCTTTGCTTTATATTA
1 CTTTGCTTTGCTTTGCTTTATATTA
** *
16340199 CTTTGCTTTGCTTTTTTTTATATTG
1 CTTTGCTTTGCTTTGCTTTATATTA
16340224 CTTTGCTT
1 CTTTGCTT
16340232 CATCATTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.09, C:0.16, G:0.12, T:0.64
Consensus pattern (25 bp):
CTTTGCTTTGCTTTGCTTTATATTA
Found at i:16340204 original size:20 final size:20
Alignment explanation
Indices: 16340179--16340231 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
16340169 TTGCTCTTTG
16340179 CTTTGCTTTGCTTTATATTA
1 CTTTGCTTTGCTTTATATTA
* *
16340199 CTTTGCTTTGCTTTTTTTTA
1 CTTTGCTTTGCTTTATATTA
16340219 -TATTGCTTTGCTT
1 CT-TTGCTTTGCTT
16340232 CATCATTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.09, C:0.15, G:0.11, T:0.64
Consensus pattern (20 bp):
CTTTGCTTTGCTTTATATTA
Found at i:16341349 original size:27 final size:27
Alignment explanation
Indices: 16341319--16341373 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
16341309 GTTAATATAG
*
16341319 AGCAAAGAG-AAAAGCAAAGCCAAGCAA
1 AGCAAAGAGCAAAA-CAAAGCAAAGCAA
*
16341346 AGCAAAGAGCAAAACAAAGTAAAGCAA
1 AGCAAAGAGCAAAACAAAGCAAAGCAA
16341373 A
1 A
16341374 TTGAACTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.62, C:0.16, G:0.20, T:0.02
Consensus pattern (27 bp):
AGCAAAGAGCAAAACAAAGCAAAGCAA
Found at i:16341356 original size:22 final size:22
Alignment explanation
Indices: 16341331--16341373 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
16341321 CAAAGAGAAA
* *
16341331 AGCAAAGCCAAGCAAAGCAAAG
1 AGCAAAACAAAGCAAAGCAAAG
*
16341353 AGCAAAACAAAGTAAAGCAAA
1 AGCAAAACAAAGCAAAGCAAA
16341374 TTGAACTCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.19, G:0.19, T:0.02
Consensus pattern (22 bp):
AGCAAAACAAAGCAAAGCAAAG
Found at i:16345374 original size:5 final size:5
Alignment explanation
Indices: 16345361--16345645 Score: 72
Period size: 5 Copynumber: 54.2 Consensus size: 5
16345351 CATACAATAT
* ** **
16345361 AAAGT AAAGC AAAGC AAAGC AAGATAA AAAGC AAAGC AATATAA AAAGC
1 AAAGC AAAGC AAAGC AAAGC AA-A-GC AAAGC AAAGC AA-A-GC AAAGC
* * * ** ** *
16345410 AAAGA AAATC AAAGA AATATA AAAAGC AAAGC AAATA AAAGC AATA-T
1 AAAGC AAAGC AAAGC AA-AGC AA-AGC AAAGC AAAGC AAAGC AA-AGC
* ** ** *
16345457 AAAGC AAAGC AAAGC ACAGC ACGGC AATATAA AAAGC AAAGC AAAGC AAAAC
1 AAAGC AAAGC AAAGC AAAGC AAAGC AA-A-GC AAAGC AAAGC AAAGC AAAGC
* ** * ** *
16345509 AATATC AATATA AAAGC AAAGT AAAGC ACAA-C AAAGC AATATAA AAAGT
1 AA-AGC AA-AGC AAAGC AAAGC AAAGC A-AAGC AAAGC AA-A-GC AAAGC
* * ** * * *
16345558 AAAAC AAAGC AAAAC AATATA AAATGT AAAGC AAAGC AAAGC AAAGA AAAAC
1 AAAGC AAAGC AAAGC AA-AGC AAA-GC AAAGC AAAGC AAAGC AAAGC AAAGC
* * *
16345610 AAAGC AAAGC ACAA-C AATGC AAACC AAAGC ACAGC A
1 AAAGC AAAGC A-AAGC AAAGC AAAGC AAAGC AAAGC A
16345646 CATCACAACA
Statistics
Matches: 201, Mismatches: 61, Indels: 36
0.67 0.20 0.12
Matches are distributed among these distances:
4 4 0.02
5 155 0.77
6 34 0.17
7 8 0.04
ACGTcount: A:0.62, C:0.15, G:0.13, T:0.09
Consensus pattern (5 bp):
AAAGC
Found at i:16345393 original size:17 final size:17
Alignment explanation
Indices: 16345371--16345413 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
16345361 AAAGTAAAGC
16345371 AAAGCAAAGCAAGATAA
1 AAAGCAAAGCAAGATAA
*
16345388 AAAGCAAAGCAATATAA
1 AAAGCAAAGCAAGATAA
16345405 AAAGCAAAG
1 AAAGCAAAG
16345414 AAAATCAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.65, C:0.12, G:0.16, T:0.07
Consensus pattern (17 bp):
AAAGCAAAGCAAGATAA
Done.