Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 47 of 182
Found at i:16488109 original size:18 final size:18
Alignment explanation
Indices: 16488086--16488123 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
16488076 TCCAATATTA
*
16488086 CTCTTAAGAGCCAGTATG
1 CTCTTAAGAGCCAATATG
16488104 CTCTTAAGAGCCAATATG
1 CTCTTAAGAGCCAATATG
16488122 CT
1 CT
16488124 TAAACAACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (18 bp):
CTCTTAAGAGCCAATATG
Found at i:16488158 original size:18 final size:18
Alignment explanation
Indices: 16488137--16488209 Score: 83
Period size: 18 Copynumber: 4.1 Consensus size: 18
16488127 ACAACGTAGA
* *
16488137 ATGCTCAAATGAGCCAAT
1 ATGCTCAAACGAGCCAGT
*
16488155 ATGCTGAAACGAGCCAGT
1 ATGCTCAAACGAGCCAGT
* * *
16488173 ATGCTCTAATGACCCAGT
1 ATGCTCAAACGAGCCAGT
*
16488191 ATGCTGAAACGAGCCAGT
1 ATGCTCAAACGAGCCAGT
16488209 A
1 A
16488210 CGTTATTCCT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (18 bp):
ATGCTCAAACGAGCCAGT
Found at i:16488177 original size:36 final size:36
Alignment explanation
Indices: 16488093--16488209 Score: 139
Period size: 36 Copynumber: 3.2 Consensus size: 36
16488083 TTACTCTTAA
*
16488093 GAGCCAGTATGCTCTTAA-GAGCCAATATGCTTAAAC
1 GAGCCAGTATGCTC-TAATGAGCCAATATGCTGAAAC
* * * *
16488129 -AACGTAGAATGCTCAAATGAGCCAATATGCTGAAAC
1 GAGC-CAGTATGCTCTAATGAGCCAATATGCTGAAAC
* *
16488165 GAGCCAGTATGCTCTAATGACCCAGTATGCTGAAAC
1 GAGCCAGTATGCTCTAATGAGCCAATATGCTGAAAC
16488201 GAGCCAGTA
1 GAGCCAGTA
16488210 CGTTATTCCT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
35 4 0.06
36 61 0.91
37 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (36 bp):
GAGCCAGTATGCTCTAATGAGCCAATATGCTGAAAC
Found at i:16495117 original size:18 final size:18
Alignment explanation
Indices: 16495082--16495214 Score: 140
Period size: 18 Copynumber: 7.3 Consensus size: 18
16495072 TCCTTTTGAT
**
16495082 CCAGTATTGCTCTTACGAG
1 CCAGTA-TGCTCAAACGAG
*
16495101 CCAATATGCTCAAACGAG
1 CCAGTATGCTCAAACGAG
*
16495119 CCAGTATGCTCAAACAAG
1 CCAGTATGCTCAAACGAG
*
16495137 CCAGTATGCTCAAACAAG
1 CCAGTATGCTCAAACGAG
* *
16495155 CTATTATGCTCAAACGAG
1 CCAGTATGCTCAAACGAG
* * *
16495173 CTATTATGCTCAAACAAG
1 CCAGTATGCTCAAACGAG
* *
16495191 CTAGTATGCTCTAACGAG
1 CCAGTATGCTCAAACGAG
*
16495209 CTAGTA
1 CCAGTA
16495215 CGCTATTCCT
Statistics
Matches: 102, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
18 97 0.95
19 5 0.05
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (18 bp):
CCAGTATGCTCAAACGAG
Found at i:16495165 original size:54 final size:54
Alignment explanation
Indices: 16495105--16495211 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
16495095 TACGAGCCAA
16495105 TATGCTCAAACGAGCCAGTATGCTCAAACAAGCCAGTATGCTCAAACAAGCTAT
1 TATGCTCAAACGAGCCAGTATGCTCAAACAAGCCAGTATGCTCAAACAAGCTAT
* * * * *
16495159 TATGCTCAAACGAGCTATTATGCTCAAACAAGCTAGTATGCTCTAACGAGCTA
1 TATGCTCAAACGAGCCAGTATGCTCAAACAAGCCAGTATGCTCAAACAAGCTA
16495212 GTACGCTATT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (54 bp):
TATGCTCAAACGAGCCAGTATGCTCAAACAAGCCAGTATGCTCAAACAAGCTAT
Found at i:16495211 original size:36 final size:36
Alignment explanation
Indices: 16495096--16495209 Score: 156
Period size: 36 Copynumber: 3.2 Consensus size: 36
16495086 TATTGCTCTT
* *
16495096 ACGAGCCAATATGCTCAAACGAGCCAGTATGCTCAA
1 ACGAGCCAATATGCTCAAACAAGCTAGTATGCTCAA
* * *
16495132 ACAAGCCAGTATGCTCAAACAAGCTATTATGCTCAA
1 ACGAGCCAATATGCTCAAACAAGCTAGTATGCTCAA
* * *
16495168 ACGAGCTATTATGCTCAAACAAGCTAGTATGCTCTA
1 ACGAGCCAATATGCTCAAACAAGCTAGTATGCTCAA
16495204 ACGAGC
1 ACGAGC
16495210 TAGTACGCTA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 68 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (36 bp):
ACGAGCCAATATGCTCAAACAAGCTAGTATGCTCAA
Found at i:16497155 original size:30 final size:30
Alignment explanation
Indices: 16497121--16497507 Score: 487
Period size: 30 Copynumber: 12.9 Consensus size: 30
16497111 GTAATTTTTG
*
16497121 AAAGTTTCGAGGTCAAAATGTAATTTAGGA
1 AAAGTTTTGAGGTCAAAATGTAATTTAGGA
* * *
16497151 AAAGTTTCGGGGTCAAAATATAATTTTA-GA
1 AAAGTTTTGAGGTCAAAATGTAA-TTTAGGA
*
16497181 AAAGTTTTGGGGTCAAAATGTAATTTAGGA
1 AAAGTTTTGAGGTCAAAATGTAATTTAGGA
* *
16497211 AAAGTTTTGGGGTCAAAATATAATTTAGGA
1 AAAGTTTTGAGGTCAAAATGTAATTTAGGA
*
16497241 AAAGTTTTAAGGTCAAAATGTAATTTAGGA
1 AAAGTTTTGAGGTCAAAATGTAATTTAGGA
* *
16497271 AAAGTTTTGCGGTTAAAATGTAATTTAGGA
1 AAAGTTTTGAGGTCAAAATGTAATTTAGGA
* * *
16497301 AAACTTTTGGGGTCAAAATGTAATTTAAGA
1 AAAGTTTTGAGGTCAAAATGTAATTTAGGA
*
16497331 AAAGTTTTGGGGTCAAAATGTAATTTAGGAA
1 AAAGTTTTGAGGTCAAAATGTAATTTAGG-A
* * *
16497362 AAAGTTTT-AGGGTTAAAATATAATCATA-GA
1 AAAGTTTTGA-GGTCAAAATGTAAT-TTAGGA
* * *
16497392 AAAGTTTTAAGGTTAAAATATAATTTAGGA
1 AAAGTTTTGAGGTCAAAATGTAATTTAGGA
16497422 AAAGTTTT-AGGGTCAAAATGTAATTTAGGA
1 AAAGTTTTGA-GGTCAAAATGTAATTTAGGA
16497452 AAAGTTTT-AGGGTCAAAATGTAATTTAGGA
1 AAAGTTTTGA-GGTCAAAATGTAATTTAGGA
* *
16497482 AAAGTTTTGGGGTTAAAATGTAATTT
1 AAAGTTTTGAGGTCAAAATGTAATTT
16497508 TTGGACAATT
Statistics
Matches: 322, Mismatches: 26, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
29 7 0.02
30 286 0.89
31 27 0.08
32 2 0.01
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (30 bp):
AAAGTTTTGAGGTCAAAATGTAATTTAGGA
Found at i:16497195 original size:60 final size:60
Alignment explanation
Indices: 16497078--16497507 Score: 539
Period size: 60 Copynumber: 7.2 Consensus size: 60
16497068 ATCGGGGTTT
* * * ** * *
16497078 AAAATGGAATTTAGG-GAAG-TTTGGGG-GAAAATGGTAATTTTTG-AAAGTTTCGAGGTC
1 AAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAAT-GTAATTTAGGAAAAGTTTTGGGGTC
* *
16497135 AAAATGTAATTTAGGAAAAGTTTCGGGGTCAAAATATAATTTTA-GAAAAGTTTTGGGGTC
1 AAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATGTAA-TTTAGGAAAAGTTTTGGGGTC
* **
16497195 AAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTAGGAAAAGTTTTAAGGTC
1 AAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTGGGGTC
* * *
16497255 AAAATGTAATTTAGGAAAAGTTTTGCGGTTAAAATGTAATTTAGGAAAACTTTTGGGGTC
1 AAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTGGGGTC
* * *
16497315 AAAATGTAATTTAAGAAAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAAGTTTTAGGGTT
1 AAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATGTAATTTAGG-AAAAGTTTTGGGGTC
* * ** * * *
16497376 AAAATATAATCATA-GAAAAGTTTTAAGGTTAAAATATAATTTAGGAAAAGTTTTAGGGTC
1 AAAATGTAAT-TTAGGAAAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTGGGGTC
* *
16497436 AAAATGTAATTTAGGAAAAGTTTTAGGGTCAAAATGTAATTTAGGAAAAGTTTTGGGGTT
1 AAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTGGGGTC
16497496 AAAATGTAATTT
1 AAAATGTAATTT
16497508 TTGGACAATT
Statistics
Matches: 327, Mismatches: 37, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
57 14 0.04
58 3 0.01
59 16 0.05
60 244 0.75
61 48 0.15
62 2 0.01
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (60 bp):
AAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTGGGGTC
Found at i:16497226 original size:90 final size:90
Alignment explanation
Indices: 16497121--16497507 Score: 537
Period size: 90 Copynumber: 4.3 Consensus size: 90
16497111 GTAATTTTTG
* * ** *
16497121 AAAGTTTCGAGGTCAAAATGTAATTTAGGAAAAGTTTCGGGGTCAAAATATAATTTTA-GAAAAG
1 AAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTAGGGTCAAAATGTAA-TTTAGGAAAAG
*
16497185 TTTTGGGGTCAAAATGTAATTTAGGA
65 TTTTAGGGTCAAAATGTAATTTAGGA
* *
16497211 AAAGTTTTGGGGTCAAAATATAATTTAGGAAAAGTTTTAAGGTCAAAATGTAATTTAGGAAAAGT
1 AAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTAGGGTCAAAATGTAATTTAGGAAAAGT
*
16497276 TTT-GCGGTTAAAATGTAATTTAGGA
66 TTTAG-GGTCAAAATGTAATTTAGGA
* * *
16497301 AAACTTTTGGGGTCAAAATGTAATTTAAGAAAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAAG
1 AAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTAGGGTCAAAATGTAATTTAGG-AAAAG
* * *
16497366 TTTTAGGGTTAAAATATAATCATA-GA
65 TTTTAGGGTCAAAATGTAAT-TTAGGA
** * *
16497392 AAAGTTTTAAGGTTAAAATATAATTTAGGAAAAGTTTTAGGGTCAAAATGTAATTTAGGAAAAGT
1 AAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTAGGGTCAAAATGTAATTTAGGAAAAGT
16497457 TTTAGGGTCAAAATGTAATTTAGGA
66 TTTAGGGTCAAAATGTAATTTAGGA
*
16497482 AAAGTTTTGGGGTTAAAATGTAATTT
1 AAAGTTTTGGGGTCAAAATGTAATTT
16497508 TTGGACAATT
Statistics
Matches: 263, Mismatches: 28, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
89 7 0.03
90 177 0.67
91 76 0.29
92 3 0.01
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (90 bp):
AAAGTTTTGGGGTCAAAATGTAATTTAGGAAAAGTTTTAGGGTCAAAATGTAATTTAGGAAAAGT
TTTAGGGTCAAAATGTAATTTAGGA
Found at i:16497439 original size:15 final size:15
Alignment explanation
Indices: 16497421--16497469 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
16497411 ATAATTTAGG
16497421 AAAAGTTTTAGGGTC
1 AAAAGTTTTAGGGTC
16497436 AAAATGTAATTTA-GG--
1 AAAA-GT--TTTAGGGTC
16497451 AAAAGTTTTAGGGTC
1 AAAAGTTTTAGGGTC
16497466 AAAA
1 AAAA
16497470 TGTAATTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 12
0.70 0.00 0.30
Matches are distributed among these distances:
12 4 0.14
13 2 0.07
14 2 0.07
15 12 0.43
16 2 0.07
17 2 0.07
18 4 0.14
ACGTcount: A:0.43, C:0.04, G:0.22, T:0.31
Consensus pattern (15 bp):
AAAAGTTTTAGGGTC
Found at i:16497450 original size:18 final size:18
Alignment explanation
Indices: 16497427--16497480 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
16497417 TAGGAAAAGT
16497427 TTTAGGGTCAAAATGTAA
1 TTTAGGGTCAAAATGTAA
16497445 TTTA-GG--AAAA-GT--
1 TTTAGGGTCAAAATGTAA
16497457 TTTAGGGTCAAAATGTAA
1 TTTAGGGTCAAAATGTAA
16497475 TTTAGG
1 TTTAGG
16497481 AAAAGTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
12 4 0.13
13 2 0.07
14 2 0.07
15 8 0.27
16 2 0.07
17 2 0.07
18 10 0.33
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (18 bp):
TTTAGGGTCAAAATGTAA
Found at i:16499396 original size:6 final size:6
Alignment explanation
Indices: 16499387--16499486 Score: 91
Period size: 6 Copynumber: 16.8 Consensus size: 6
16499377 TTTTTTAATG
* ** * *
16499387 TTAAAT TTAATAT TTTAAT TTTTAT TTAAAT TTAAAT TCAAA- GTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
16499435 TTAAAT AATTAAAT TTAAAT TTAAA- ATAAAT TTAAAT TTAAA- -TAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
16499482 TTAAA
1 TTAAA
16499487 ATCAATTTAA
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
4 4 0.05
5 7 0.09
6 55 0.71
7 5 0.06
8 6 0.08
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (6 bp):
TTAAAT
Found at i:16499433 original size:17 final size:16
Alignment explanation
Indices: 16499413--16499491 Score: 90
Period size: 17 Copynumber: 4.9 Consensus size: 16
16499403 AATTTTTATT
16499413 TAAATTTAAATTCAAA
1 TAAATTTAAATTCAAA
*
16499429 GTAAATTTAAA-T-AAT
1 -TAAATTTAAATTCAAA
*
16499444 TAAATTTAAATTTAAAA
1 TAAATTTAAA-TTCAAA
*
16499461 TAAATTTAAATTTAAA
1 TAAATTTAAATTCAAA
*
16499477 TAAATTTAAAATCAA
1 TAAATTTAAATTCAA
16499492 TTTAACTCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
14 10 0.19
15 2 0.04
16 20 0.37
17 22 0.41
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (16 bp):
TAAATTTAAATTCAAA
Found at i:16499447 original size:31 final size:32
Alignment explanation
Indices: 16499412--16499491 Score: 108
Period size: 31 Copynumber: 2.5 Consensus size: 32
16499402 TAATTTTTAT
*
16499412 TTAAATTTAAATTCAAAGTAAATTTAAA-TAA
1 TTAAATTTAAATTCAAAATAAATTTAAATTAA
*
16499443 TTAAATTTAAATTTAAAATAAATTTAAATTTAA
1 TTAAATTTAAATTCAAAATAAATTTAAA-TTAA
* *
16499476 ATAAATTTAAAATCAA
1 TTAAATTTAAATTCAA
16499492 TTTAACTCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (32 bp):
TTAAATTTAAATTCAAAATAAATTTAAATTAA
Found at i:16499503 original size:27 final size:27
Alignment explanation
Indices: 16499450--16499504 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
16499440 TAATTAAATT
*
16499450 TAAATTTAAAATAAATTTAAATTTAAA
1 TAAATTTAAAATAAATTTAAATCTAAA
* *
16499477 TAAATTTAAAATCAATTTAACTCTAAA
1 TAAATTTAAAATAAATTTAAATCTAAA
16499504 T
1 T
16499505 TAAAAAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (27 bp):
TAAATTTAAAATAAATTTAAATCTAAA
Found at i:16499962 original size:68 final size:68
Alignment explanation
Indices: 16499836--16500589 Score: 1090
Period size: 68 Copynumber: 11.1 Consensus size: 68
16499826 GGAAATGATC
* * * *
16499836 TTGCTATTATTTCAAATTT-AGAGGTAAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGAGGA
1 TTGCTCTTACTTC-AATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGA
*
16499900 TGACG
64 CGACG
*
16499905 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAG-GGGCT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAC-
*
16499969 GACA
65 GACG
* * ** *
16499973 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATTCTTTCTACTTCAATTTCAAGAGGACA
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
16500038 ACG
66 ACG
* * *
16500041 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTTTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
16500106 ACAG
66 AC-G
* **
16500110 -TGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAATTTCAAGAGGACG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
16500174 ACG
66 ACG
* *
16500177 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGACA
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
16500242 ACG
66 ACG
* * *
16500245 TTG--C-T-CTTCAATTTCAGAGATAAAGACGTGTTATCCACTCAACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
*
16500306 ACA
66 ACG
* ** *
16500309 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAGTTTCAAGAGGACG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
16500374 ACG
66 ACG
* **
16500377 TTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCTTTCTACTTCAATTTCAAGAGGACG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
16500442 ACG
66 ACG
* **
16500445 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAATTTCAAGAGGACG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
16500510 ACG
66 ACG
* *
16500513 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
*
16500578 ACA
66 ACG
16500581 TTGCTCTTA
1 TTGCTCTTA
16500590 TTTGGTCTGA
Statistics
Matches: 620, Mismatches: 56, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
64 58 0.09
65 1 0.00
66 2 0.00
67 4 0.01
68 521 0.84
69 34 0.05
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (68 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACG
ACG
Found at i:16500587 original size:336 final size:336
Alignment explanation
Indices: 16499836--16500588 Score: 1260
Period size: 336 Copynumber: 2.2 Consensus size: 336
16499826 GGAAATGATC
* * * * *
16499836 TTGCTATTATTTCAAATTT-AGAGGTAAAGGCGTGTTATCCAACTCTACTTCAATTTCAAGAGGA
1 TTGCTCTTACTTC-AATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGGGGA
*
16499900 TGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGG
64 TGACGTTG--C-T-CTTCAATTTCAGAGATAAAGACGTGTTATCCACTCAACTTCAATTTCAAGG
* *
16499965 GGCTGACATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATTCTTTCTACTTCAATTTCA
125 GGATGACATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAATTTCA
*
16500030 AGAGGACAACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTTTACTTCAATT
190 AGAGGACAACGTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTTTACTTCAATT
* *
16500095 TCAAGGGGATGACAGTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCA
255 TCAAGAGGACGACAGTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCA
16500160 ATTTCAAGAGGACGACG
320 ATTTCAAGAGGACGACG
**
16500177 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGACA
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
16500242 ACGTTGCTCTTCAATTTCAGAGATAAAGACGTGTTATCCACTCAACTTCAATTTCAAGGGGATGA
66 ACGTTGCTCTTCAATTTCAGAGATAAAGACGTGTTATCCACTCAACTTCAATTTCAAGGGGATGA
*
16500307 CATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAGTTTCAAGAGGA
131 CATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAATTTCAAGAGGA
* *
16500372 CGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCC-TTTCTACTTCAATTTCAAG
196 CAACGTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTT-TACTTCAATTTCAAG
16500436 AGGACGAC-GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAATTT
260 AGGACGACAG-TGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAATTT
16500500 CAAGAGGACGACG
324 CAAGAGGACGACG
16500513 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
*
16500578 ACATTGCTCTT
66 ACGTTGCTCTT
16500589 ATTTGGTCTG
Statistics
Matches: 390, Mismatches: 19, Indels: 11
0.93 0.05 0.03
Matches are distributed among these distances:
335 3 0.01
336 322 0.83
337 1 0.00
338 1 0.00
340 33 0.08
341 30 0.08
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (336 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
ACGTTGCTCTTCAATTTCAGAGATAAAGACGTGTTATCCACTCAACTTCAATTTCAAGGGGATGA
CATTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAATTTCAAGAGGA
CAACGTTGCTCTTACTTCAATTTCAGAGATAAAGACATGTTATCCACTTTACTTCAATTTCAAGA
GGACGACAGTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCTTTCTACTTCAATTTCA
AGAGGACGACG
Found at i:16512543 original size:30 final size:30
Alignment explanation
Indices: 16512457--16512869 Score: 428
Period size: 30 Copynumber: 13.6 Consensus size: 30
16512447 TGGTGAAATC
* *
16512457 GGGGTTTAAAATGGAATTTAGG-GAAG-TTT
1 GGGG-TTAAAATGTAATTTAGGAAAAGTTTT
* * *
16512486 GGGGGTAAAATGGTAATTT-TG-AAAGTTTC
1 GGGGTTAAAAT-GTAATTTAGGAAAAGTTTT
*
16512515 GGGGTCAAAATGTAATTTAGGAAAAG-TTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTT
* * *
16512544 CGGGTTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGTT-AAAATGTAATTTAGGAAAAGTTTT
*
16512575 GGGGTTAAAATGTAATTTTGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTT
**
16512605 ATGGTTAAAATGTAATTTAGGAAAAGTTTTAGGGTTTT
1 GGGGTTAAAATGTAATTTAGG-AAA-----A--GTTTT
16512643 GGGGTTAAAATGTAATTTAGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTT
* *
16512673 GGGGTTAAAATATAATTTTGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTT
*
16512703 AGGGTTAAAATGTAATTTAGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTT
* * *
16512733 GGGGTCAAAATATAATTTTGGAAAAG-TTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTT
*
16512762 GAGGTTAAAATGTAA-TTATGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTA-GGAAAAGTTTT
* *
16512792 GGGGTCAAAATATAATTTAGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTT
* *
16512822 GGGGTCAAAATGTATTTTCA-GAAAAGTTTT
1 GGGGTTAAAATGTAATTT-AGGAAAAGTTTT
* *
16512852 GAGGTCAAAATGTAATTT
1 GGGGTTAAAATGTAATTT
16512870 CTGGACAATT
Statistics
Matches: 326, Mismatches: 40, Indels: 35
0.81 0.10 0.09
Matches are distributed among these distances:
28 19 0.06
29 50 0.15
30 213 0.65
31 15 0.05
32 1 0.00
36 1 0.00
37 3 0.01
38 24 0.07
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.37
Consensus pattern (30 bp):
GGGGTTAAAATGTAATTTAGGAAAAGTTTT
Found at i:16512585 original size:60 final size:60
Alignment explanation
Indices: 16512457--16512874 Score: 472
Period size: 60 Copynumber: 6.9 Consensus size: 60
16512447 TGGTGAAATC
* * * * *
16512457 GGGGTTTAAAATGGAATTTAGG-GAAGTTTGGGGGT-AAAATGGTAATTTT-G-AAAGTTTC
1 GGGG-TTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAAT-ATAATTTTGGAAAAGTTTT
* * *
16512515 GGGGTCAAAATGTAATTTAGGAAAAGTTTCGGGTTCAAAATATAATTTTGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTT
* ** * * *
16512575 GGGGTTAAAATGTAATTTTGGAAAAGTTTTATGGTTAAAATGTAATTTAGGAAAAGTTTTAGGGT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTTGG-AAA-----A--GT
16512640 TTT
58 TTT
*
16512643 GGGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTT
*
16512703 AGGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAG-TTT
1 GGGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTT
* *
16512762 GAGGTTAAAATGTAA-TTATGGAAAAGTTTTGGGGTCAAAATATAATTTAGGAAAAGTTTT
1 GGGGTTAAAATGTAATTTA-GGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTT
* * * *
16512822 GGGGTCAAAATGTATTTTCA-GAAAAGTTTTGAGGTCAAAATGTAATTTCTGGA
1 GGGGTTAAAATGTAATTT-AGGAAAAGTTTTGGGGTCAAAATATAATTT-TGGA
16512875 CAATTTAGGG
Statistics
Matches: 311, Mismatches: 32, Indels: 31
0.83 0.09 0.08
Matches are distributed among these distances:
57 15 0.05
58 24 0.08
59 58 0.19
60 149 0.48
61 8 0.03
62 2 0.01
66 1 0.00
67 3 0.01
68 51 0.16
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.36
Consensus pattern (60 bp):
GGGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTTGGAAAAGTTTT
Found at i:16512720 original size:98 final size:98
Alignment explanation
Indices: 16512545--16512826 Score: 393
Period size: 98 Copynumber: 3.0 Consensus size: 98
16512535 GAAAAGTTTC
*
16512545 GGGTTCAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTATGGT
1 GGGTT-AAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTAGGGT
16512610 TAAAATGTAATTTAGGAAAAGTTTTAGGGTTTTG
65 TAAAATGTAATTTAGGAAAAGTTTTAGGGTTTTG
* * *
16512644 GGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTTAGGGTT
1 GGGTTAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTAGGGTT
16512709 AAAATGTAATTTAGG-AAA-----A--GTTTTG
66 AAAATGTAATTTAGGAAAAGTTTTAGGGTTTTG
* * * * *
16512734 GGGTCAAAATATAATTTTGGAAAAG-TTTGAGGTTAAAATGTAATTATGGAAAAGTTTTGGGGTC
1 GGGTTAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTAGGGTT
* *
16512798 AAAATATAATTTAGGAAAAGTTTTGGGGT
66 AAAATGTAATTTAGGAAAAGTTTTAGGGT
16512827 CAAAATGTAT
Statistics
Matches: 161, Mismatches: 14, Indels: 18
0.83 0.07 0.09
Matches are distributed among these distances:
89 48 0.30
90 31 0.19
92 1 0.01
97 5 0.03
98 71 0.44
99 5 0.03
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.38
Consensus pattern (98 bp):
GGGTTAAAATATAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGAAAAGTTTTAGGGTT
AAAATGTAATTTAGGAAAAGTTTTAGGGTTTTG
Found at i:16512858 original size:119 final size:120
Alignment explanation
Indices: 16512640--16512874 Score: 359
Period size: 119 Copynumber: 2.0 Consensus size: 120
16512630 GTTTTAGGGT
* * *
16512640 TTTGGGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTTAAAATATAATTTTGGAAAAGTTTTAG
1 TTTGAGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTAGGAAAAGTTTTAG
* *
16512705 GGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTT-TGGAAAAG
66 GGTCAAAATGTAATTTAGGAAAAGTTTTGAGGTCAAAATATAATTTCTGGAAAAG
*
16512759 TTTGAGGTTAAAATGTAA-TTATGGAAAAGTTTTGGGGTCAAAATATAATTTAGGAAAAGTTTTG
1 TTTGAGGTTAAAATGTAATTTA-GGAAAAGTTTTGGGGTCAAAATATAATTTAGGAAAAGTTTTA
* *
16512823 GGGTCAAAATGTATTTTCA-GAAAAGTTTTGAGGTCAAAATGTAATTTCTGGA
65 GGGTCAAAATGTAATTT-AGGAAAAGTTTTGAGGTCAAAATATAATTTCTGGA
16512875 CAATTTAGGG
Statistics
Matches: 105, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
118 3 0.03
119 97 0.92
120 5 0.05
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.37
Consensus pattern (120 bp):
TTTGAGGTTAAAATGTAATTTAGGAAAAGTTTTGGGGTCAAAATATAATTTAGGAAAAGTTTTAG
GGTCAAAATGTAATTTAGGAAAAGTTTTGAGGTCAAAATATAATTTCTGGAAAAG
Found at i:16514524 original size:16 final size:16
Alignment explanation
Indices: 16514503--16514533 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16514493 CAGGGCATGG
16514503 TGGAGCAGGTGGTGGA
1 TGGAGCAGGTGGTGGA
*
16514519 TGGAGCTGGTGGTGG
1 TGGAGCAGGTGGTGG
16514534 CAGCAGCACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.06, G:0.58, T:0.23
Consensus pattern (16 bp):
TGGAGCAGGTGGTGGA
Found at i:16514728 original size:6 final size:6
Alignment explanation
Indices: 16514719--16514818 Score: 91
Period size: 6 Copynumber: 16.8 Consensus size: 6
16514709 TTTTTTAATG
* ** * *
16514719 TTAAAT TTAATAT TTTAAT TTTTAT TTAAAT TTAAAT TCAAA- GTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
16514767 TTAAAT AATTAAAT TTAAAT TTAAA- ATAAAT TTAAAT TTAAA- -TAAAT
1 TTAAAT --TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
16514814 TTAAA
1 TTAAA
16514819 ATCAATTTAA
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
4 4 0.05
5 7 0.09
6 55 0.71
7 5 0.06
8 6 0.08
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (6 bp):
TTAAAT
Found at i:16514765 original size:17 final size:16
Alignment explanation
Indices: 16514745--16514823 Score: 90
Period size: 17 Copynumber: 4.9 Consensus size: 16
16514735 AATTTTTATT
16514745 TAAATTTAAATTCAAA
1 TAAATTTAAATTCAAA
*
16514761 GTAAATTTAAA-T-AAT
1 -TAAATTTAAATTCAAA
*
16514776 TAAATTTAAATTTAAAA
1 TAAATTTAAA-TTCAAA
*
16514793 TAAATTTAAATTTAAA
1 TAAATTTAAATTCAAA
*
16514809 TAAATTTAAAATCAA
1 TAAATTTAAATTCAA
16514824 TTTAACTCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
14 10 0.19
15 2 0.04
16 20 0.37
17 22 0.41
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (16 bp):
TAAATTTAAATTCAAA
Found at i:16514779 original size:31 final size:32
Alignment explanation
Indices: 16514744--16514823 Score: 108
Period size: 31 Copynumber: 2.5 Consensus size: 32
16514734 TAATTTTTAT
*
16514744 TTAAATTTAAATTCAAAGTAAATTTAAA-TAA
1 TTAAATTTAAATTCAAAATAAATTTAAATTAA
*
16514775 TTAAATTTAAATTTAAAATAAATTTAAATTTAA
1 TTAAATTTAAATTCAAAATAAATTTAAA-TTAA
* *
16514808 ATAAATTTAAAATCAA
1 TTAAATTTAAATTCAA
16514824 TTTAACTCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (32 bp):
TTAAATTTAAATTCAAAATAAATTTAAATTAA
Found at i:16514835 original size:27 final size:27
Alignment explanation
Indices: 16514782--16514836 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
16514772 TAATTAAATT
*
16514782 TAAATTTAAAATAAATTTAAATTTAAA
1 TAAATTTAAAATAAATTTAAATCTAAA
* *
16514809 TAAATTTAAAATCAATTTAACTCTAAA
1 TAAATTTAAAATAAATTTAAATCTAAA
16514836 T
1 T
16514837 TAAAAAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (27 bp):
TAAATTTAAAATAAATTTAAATCTAAA
Found at i:16515327 original size:21 final size:21
Alignment explanation
Indices: 16515301--16515340 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
16515291 TACAAACAAT
16515301 GTTTTACAGT-CTCAATGCTAA
1 GTTTTACAGTCCT-AATGCTAA
*
16515322 GTTTTATAGTCCTAATGCT
1 GTTTTACAGTCCTAATGCT
16515341 GGTTAGTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.42
Consensus pattern (21 bp):
GTTTTACAGTCCTAATGCTAA
Found at i:16517536 original size:21 final size:20
Alignment explanation
Indices: 16517512--16517551 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
16517502 TTTTATATTT
*
16517512 TTTCTCTTTTTGTTTGTGATC
1 TTTCTCTTTTTCTTT-TGATC
16517533 TTTCTCTTTTTCTTTTGAT
1 TTTCTCTTTTTCTTTTGAT
16517552 TTTGTCCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.05, C:0.15, G:0.10, T:0.70
Consensus pattern (20 bp):
TTTCTCTTTTTCTTTTGATC
Found at i:16518098 original size:29 final size:29
Alignment explanation
Indices: 16518062--16518125 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
16518052 GTATGCAGAT
16518062 CGTGTGAGCCACACGGTCATGTGGTAGGC
1 CGTGTGAGCCACACGGTCATGTGGTAGGC
*
16518091 CGTGTGAGCCACACGGTCGTGTGGTAGGC
1 CGTGTGAGCCACACGGTCATGTGGTAGGC
16518120 CGTGTG
1 CGTGTG
16518126 GTGAACTTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.14, C:0.23, G:0.41, T:0.22
Consensus pattern (29 bp):
CGTGTGAGCCACACGGTCATGTGGTAGGC
Found at i:16518861 original size:6 final size:6
Alignment explanation
Indices: 16518850--16518887 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
16518840 AGATAATTGC
* *
16518850 ATTTGT ATTTGT ATTTAT ATTTGT ATCTGT ATTTGT AT
1 ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT AT
16518888 CTGATCTGTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.21, C:0.03, G:0.13, T:0.63
Consensus pattern (6 bp):
ATTTGT
Found at i:16518918 original size:16 final size:17
Alignment explanation
Indices: 16518874--16518922 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
16518864 TTATATTTGT
16518874 ATCTGTATTTGTATCT-G
1 ATCTGT-TTTGTATCTAG
**
16518891 ATCTGTCATGTATCTAG
1 ATCTGTTTTGTATCTAG
16518908 AT-TGTTTTGTATCTA
1 ATCTGTTTTGTATCTA
16518923 AAACTATAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.20, C:0.12, G:0.16, T:0.51
Consensus pattern (17 bp):
ATCTGTTTTGTATCTAG
Found at i:16520579 original size:29 final size:30
Alignment explanation
Indices: 16520537--16520595 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
16520527 TATGGTTTAA
*
16520537 TGTGCAATTGTATATAT-AAACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
16520566 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
16520596 AATTCAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.49
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:16524288 original size:25 final size:23
Alignment explanation
Indices: 16524260--16524307 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
16524250 ACGTGTTTAG
*
16524260 TTTTAAAATTTATTACATAATATAT
1 TTTTAAAATTT-TTA-AAAATATAT
*
16524285 TTTTATAATTTTTAAAAATATAT
1 TTTTAAAATTTTTAAAAATATAT
16524308 ATTTGTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 8 0.38
24 3 0.14
25 10 0.48
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
TTTTAAAATTTTTAAAAATATAT
Found at i:16525105 original size:20 final size:21
Alignment explanation
Indices: 16525080--16525119 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
16525070 TAATTTCACA
16525080 TTAATATATT-ATT-ATATTAC
1 TTAATAT-TTAATTGATATTAC
16525100 TTAATATTTAATTGATATTA
1 TTAATATTTAATTGATATTA
16525120 TTTTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 10 0.56
21 6 0.33
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
TTAATATTTAATTGATATTAC
Found at i:16527245 original size:27 final size:26
Alignment explanation
Indices: 16527191--16527292 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 26
16527181 ATACACTCTT
*
16527191 AAGAATCACCCTTGTGGCGAA-CTCTGA
1 AAGAAT-AGCCTTGTGGC-AATCTCTGA
* * *
16527218 AGGGATAGCCTTTGTGGCAATCTTTGA
1 AAGAATAGCC-TTGTGGCAATCTCTGA
16527245 AAGAATAGTCCTTGTGGCAATCTCTGA
1 AAGAATAG-CCTTGTGGCAATCTCTGA
16527272 AAGAATAGCCCTTGTGGCAAT
1 AAGAATAG-CCTTGTGGCAAT
16527293 AATCTGAACG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.08
27 57 0.89
28 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
AAGAATAGCCTTGTGGCAATCTCTGA
Found at i:16528371 original size:22 final size:22
Alignment explanation
Indices: 16528346--16528393 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
16528336 TAAAACACAT
*
16528346 AATAGT-AAATCAATAGTTATAC
1 AATAGTCAAA-CAAAAGTTATAC
* *
16528368 AATATTCAAACAAAAGTTATAT
1 AATAGTCAAACAAAAGTTATAC
16528390 AATA
1 AATA
16528394 TCCAAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.31
Consensus pattern (22 bp):
AATAGTCAAACAAAAGTTATAC
Found at i:16528927 original size:25 final size:24
Alignment explanation
Indices: 16528881--16528927 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
16528871 GAATTTGACA
*
16528881 TTTTTTTTAATTTGGTACTTAATT
1 TTTTTTTTAATTTGATACTTAATT
* *
16528905 TTTTTATTTGATTTGATATTTAA
1 TTTTT-TTTAATTTGATACTTAA
16528928 ACTTAACAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 5 0.26
25 14 0.74
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (24 bp):
TTTTTTTTAATTTGATACTTAATT
Found at i:16537340 original size:21 final size:21
Alignment explanation
Indices: 16537316--16537358 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
16537306 CCTAAGTAAA
*
16537316 TATTTT-TTTAAATTTTAAAAT
1 TATTTTATTTAAA-TATAAAAT
16537337 TATTTTATTTAAATATAAAAT
1 TATTTTATTTAAATATAAAAT
16537358 T
1 T
16537359 TTGGTATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TATTTTATTTAAATATAAAAT
Found at i:16548683 original size:21 final size:22
Alignment explanation
Indices: 16548649--16548689 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
16548639 CAAAAAAATT
16548649 TGCTAATTTTTTGTT-TTTTAA
1 TGCTAATTTTTTGTTATTTTAA
16548670 TGCT-ATTTTCTTGTTATTTT
1 TGCTAATTTT-TTGTTATTTT
16548690 CTCCCTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.15, C:0.07, G:0.10, T:0.68
Consensus pattern (22 bp):
TGCTAATTTTTTGTTATTTTAA
Found at i:16548970 original size:12 final size:12
Alignment explanation
Indices: 16548953--16548987 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
16548943 ATATATATTT
16548953 AAAAATTATATA
1 AAAAATTATATA
*
16548965 AAAAATAATATA
1 AAAAATTATATA
16548977 AAAAATT-TATA
1 AAAAATTATATA
16548988 TGGACAGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAAATTATATA
Found at i:16556991 original size:41 final size:41
Alignment explanation
Indices: 16556922--16557140 Score: 294
Period size: 41 Copynumber: 5.3 Consensus size: 41
16556912 ACTTGATGTA
* * *
16556922 TAAATGGAAGACTCATGTCTCGAGATGAGCATGAGATTATAT
1 TAAA-GGAAGACTCGTGACTCAAGATGAGCATGAGATTATAT
*
16556964 TAAAGGAAGACTCGTGACTCAAAATGAGCATGAGATTATAT
1 TAAAGGAAGACTCGTGACTCAAGATGAGCATGAGATTATAT
* *
16557005 TAAAGGAAGACTCGTGACTCAAAATGAACATGAGATTATAT
1 TAAAGGAAGACTCGTGACTCAAGATGAGCATGAGATTATAT
* * * * *
16557046 AAAAGGAAGACTCATGTCTCAGGTTGAGCATGAGATTATAT
1 TAAAGGAAGACTCGTGACTCAAGATGAGCATGAGATTATAT
**
16557087 TAAAGGAAGACTCGTGACTCGGGATGAGCATGAGATTATATT
1 TAAAGGAAGACTCGTGACTCAAGATGAGCATGAGATTATA-T
*
16557129 TAAAGGAGGACT
1 TAAAGGAAGACT
16557141 TATGACTCGG
Statistics
Matches: 158, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
41 142 0.90
42 16 0.10
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (41 bp):
TAAAGGAAGACTCGTGACTCAAGATGAGCATGAGATTATAT
Found at i:16557074 original size:82 final size:82
Alignment explanation
Indices: 16556922--16557178 Score: 320
Period size: 82 Copynumber: 3.1 Consensus size: 82
16556912 ACTTGATGTA
* * * **
16556922 TAAATGGAAGACTCATGTCTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCAAA
1 TAAA-GGAAGACTCGTGACTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCATGACTCAGG
*
16556987 ATGAGCATGAGATTATAT
65 TTGAGCATGAGATTATAT
* * * * *
16557005 TAAAGGAAGACTCGTGACTCAAAATGAACATGAGATTATATAAAAGGAAGACTCATGTCTCAGGT
1 TAAAGGAAGACTCGTGACTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCATGACTCAGGT
16557070 TGAGCATGAGATTATAT
66 TGAGCATGAGATTATAT
* * *
16557087 TAAAGGAAGACTCGTGACTCGGGATGAGCATGAGATTATATTTAAAGGAGGACTTATGACTC-GG
1 TAAAGGAAGACTCGTGACTCGAGATGAGCATGAGATTATA-TTAAAGGAAGACTCATGACTCAGG
* * *
16557151 TAGAGCATAAGATTGT-T
65 TTGAGCATGAGATTATAT
16557168 TAAAAGGAAGA
1 T-AAAGGAAGA
16557179 TCTACGACTC
Statistics
Matches: 150, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
81 2 0.01
82 127 0.85
83 21 0.14
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.26
Consensus pattern (82 bp):
TAAAGGAAGACTCGTGACTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCATGACTCAGGT
TGAGCATGAGATTATAT
Found at i:16557157 original size:41 final size:41
Alignment explanation
Indices: 16556922--16557178 Score: 279
Period size: 41 Copynumber: 6.2 Consensus size: 41
16556912 ACTTGATGTA
* *
16556922 TAAATGGAAGACTCATGTCTC-GAGATGAGCATGAGATTATAT
1 TAAA-GGAAGACTCGTGACTCGGA-ATGAGCATGAGATTATAT
**
16556964 TAAAGGAAGACTCGTGACTCAAAATGAGCATGAGATTATAT
1 TAAAGGAAGACTCGTGACTCGGAATGAGCATGAGATTATAT
** *
16557005 TAAAGGAAGACTCGTGACTCAAAATGAACATGAGATTATAT
1 TAAAGGAAGACTCGTGACTCGGAATGAGCATGAGATTATAT
* * * *
16557046 AAAAGGAAGACTCATGTCTCAGG-TTGAGCATGAGATTATAT
1 TAAAGGAAGACTCGTGACTC-GGAATGAGCATGAGATTATAT
*
16557087 TAAAGGAAGACTCGTGACTCGGGATGAGCATGAGATTATATT
1 TAAAGGAAGACTCGTGACTCGGAATGAGCATGAGATTATA-T
* ** * * *
16557129 TAAAGGAGGACTTATGACTCGGTA-GAGCATAAGATTGT-T
1 TAAAGGAAGACTCGTGACTCGGAATGAGCATGAGATTATAT
16557168 TAAAAGGAAGA
1 T-AAAGGAAGA
16557179 TCTACGACTC
Statistics
Matches: 188, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.01
40 10 0.05
41 150 0.80
42 26 0.14
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.26
Consensus pattern (41 bp):
TAAAGGAAGACTCGTGACTCGGAATGAGCATGAGATTATAT
Found at i:16557178 original size:123 final size:123
Alignment explanation
Indices: 16556920--16557148 Score: 352
Period size: 123 Copynumber: 1.9 Consensus size: 123
16556910 TCACTTGATG
*
16556920 TATAAATGGAAGACTCATGTCTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCA
1 TATAAAAGGAAGACTCATGTCTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCA
* *
16556985 AAATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCAAAATGAACATGAGATTA
66 AAATGAGCATGAGATTATATTAAAGGAAGACTCATGACTCAAAATGAACATAAGATTA
*
16557043 TATAAAAGGAAGACTCATGTCTC-AGGTTGAGCATGAGATTATATTAAAGGAAGACTCGTGACTC
1 TATAAAAGGAAGACTCATGTCTCGA-GATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTC
*** * *
16557107 GGGATGAGCATGAGATTATATTTAAAGGAGGACTTATGACTC
65 AAAATGAGCATGAGATTATA-TTAAAGGAAGACTCATGACTC
16557149 GGTAGAGCAT
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
122 1 0.01
123 77 0.80
124 18 0.19
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (123 bp):
TATAAAAGGAAGACTCATGTCTCGAGATGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCA
AAATGAGCATGAGATTATATTAAAGGAAGACTCATGACTCAAAATGAACATAAGATTA
Found at i:16558826 original size:19 final size:19
Alignment explanation
Indices: 16558804--16558864 Score: 55
Period size: 19 Copynumber: 3.6 Consensus size: 19
16558794 ACCCGACCCG
16558804 TTGACTTTGACCAGACCTA
1 TTGACTTTGACCAGACCTA
16558823 TTGA--TTGA-C---CC-A
1 TTGACTTTGACCAGACCTA
* *
16558835 TTGACTTTGACCAGACATG
1 TTGACTTTGACCAGACCTA
16558854 TTGACTTTGAC
1 TTGACTTTGAC
16558865 TGTTGATCGT
Statistics
Matches: 33, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
12 5 0.15
13 2 0.06
14 4 0.12
15 1 0.03
16 1 0.03
17 4 0.12
18 1 0.03
19 15 0.45
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (19 bp):
TTGACTTTGACCAGACCTA
Found at i:16574992 original size:2 final size:2
Alignment explanation
Indices: 16574981--16575027 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
16574971 TTGTAATTTG
16574981 TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
16575022 TC TC TC
1 TC TC TC
16575028 AAATAGGTAG
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:16581094 original size:6 final size:6
Alignment explanation
Indices: 16581083--16581112 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
16581073 CAGAGCGGAA
*
16581083 GTCTTT GTCTTT GTTTTT GTCTTT GTCTTT
1 GTCTTT GTCTTT GTCTTT GTCTTT GTCTTT
16581113 TTTTCTCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.13, G:0.17, T:0.70
Consensus pattern (6 bp):
GTCTTT
Found at i:16581106 original size:18 final size:17
Alignment explanation
Indices: 16581083--16581116 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
16581073 CAGAGCGGAA
16581083 GTCTTTGTCTTTGTTTTT
1 GTCTTTGTCTTT-TTTTT
16581101 GTCTTTGTCTTTTTTT
1 GTCTTTGTCTTTTTTT
16581117 CTCTAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.74
Consensus pattern (17 bp):
GTCTTTGTCTTTTTTTT
Found at i:16581931 original size:13 final size:13
Alignment explanation
Indices: 16581913--16581937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16581903 TGAAGCGGTT
16581913 AACAATGTTATTA
1 AACAATGTTATTA
16581926 AACAATGTTATT
1 AACAATGTTATT
16581938 TCTTGGAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (13 bp):
AACAATGTTATTA
Found at i:16586807 original size:31 final size:29
Alignment explanation
Indices: 16586758--16586816 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
16586748 AAATTTCGTG
16586758 TATAAAATTACACAAAATCA-AAGTTCATA
1 TATAAAATTACACAAAATCATAA-TTCATA
*
16586787 TATATAATTACACATTAAATCATAATTCAT
1 TATAAAATTACACA--AAATCATAATTCAT
16586817 GCATAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 13 0.50
31 11 0.42
32 2 0.08
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.34
Consensus pattern (29 bp):
TATAAAATTACACAAAATCATAATTCATA
Found at i:16588046 original size:21 final size:19
Alignment explanation
Indices: 16587985--16588046 Score: 63
Period size: 21 Copynumber: 3.1 Consensus size: 19
16587975 AAATAACTTT
16587985 TTTA-TAATTTTAAAAAAA
1 TTTATTAATTTTAAAAAAA
* *
16588003 TGTATCAATTTATAATAAAAA
1 TTTATTAATTT-TAA-AAAAA
16588024 TTTATTAATTTTGAAAAATAA
1 TTTATTAATTTT-AAAAA-AA
16588045 TT
1 TT
16588047 AAGGGAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
18 3 0.09
19 5 0.14
20 7 0.20
21 20 0.57
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (19 bp):
TTTATTAATTTTAAAAAAA
Found at i:16590231 original size:5 final size:6
Alignment explanation
Indices: 16590215--16590241 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
16590205 AAATATAAGG
16590215 ATTTTT ATTTTT ATTTTT ATTTTT ATT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATT
16590242 GCATTGAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:16597935 original size:22 final size:22
Alignment explanation
Indices: 16597907--16597955 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
16597897 CGGAAAGAAA
16597907 GAAAAACACACAGATTTTACGT
1 GAAAAACACACAGATTTTACGT
**
16597929 GAAAAACACATGGATTTTACGT
1 GAAAAACACACAGATTTTACGT
16597951 GAAAA
1 GAAAA
16597956 CCCTTTCGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.22
Consensus pattern (22 bp):
GAAAAACACACAGATTTTACGT
Found at i:16601282 original size:28 final size:28
Alignment explanation
Indices: 16601250--16601308 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
16601240 AATAAGGTTG
16601250 AAAC-ATCTTATTCTAATTAAAATAAAAT
1 AAACAATC-TATTCTAATTAAAATAAAAT
16601278 AAACAATCTATTCTAATTAAAATAAAAT
1 AAACAATCTATTCTAATTAAAATAAAAT
16601306 AAA
1 AAA
16601309 AGAAGTCTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 27 0.90
29 3 0.10
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (28 bp):
AAACAATCTATTCTAATTAAAATAAAAT
Found at i:16601959 original size:5 final size:5
Alignment explanation
Indices: 16601949--16601975 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
16601939 TAAAACTATT
16601949 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
16601976 CCCCTTCCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:16607905 original size:43 final size:42
Alignment explanation
Indices: 16607830--16607940 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 42
16607820 AGCACACGAG
* * * *
16607830 GTGCATCATCAGACAAACTGAAGCAATTATATT-GACACACATA
1 GTGCATCATCGGATAAACCGAAG-AATCATATTGGA-ACACATA
16607873 GTGCATCATCGGATAAACCGAAGATATCATATTGGAACACATA
1 GTGCATCATCGGATAAACCGAAGA-ATCATATTGGAACACATA
* *
16607916 GTCCATCATCGGATAAACCAAAGAA
1 GTGCATCATCGGATAAACCGAAGAA
16607941 AATATAATGG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 2 0.03
43 56 0.93
44 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (42 bp):
GTGCATCATCGGATAAACCGAAGAATCATATTGGAACACATA
Found at i:16607952 original size:43 final size:43
Alignment explanation
Indices: 16607866--16607958 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
16607856 TTATATTGAC
* * * *
16607866 ACACATAGTGCATCATCGGATAAACCGAAGATATCATATTGGA
1 ACACATAGTCCATCATCGGATAAACCAAAGAAATCATAATGGA
16607909 ACACATAGTCCATCATCGGATAAACCAAAGAAAAT-ATAATGGA
1 ACACATAGTCCATCATCGGATAAACCAAAG-AAATCATAATGGA
*
16607952 ACTCATA
1 ACACATA
16607959 CAATTAATAG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 41 0.93
44 3 0.07
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.22
Consensus pattern (43 bp):
ACACATAGTCCATCATCGGATAAACCAAAGAAATCATAATGGA
Found at i:16608638 original size:16 final size:18
Alignment explanation
Indices: 16608601--16608640 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
16608591 AGTCCCCAAG
16608601 CTTT-TAGTCAATTAAAA
1 CTTTATAGTCAATTAAAA
*
16608618 ATTTATAGT-AATT-AAA
1 CTTTATAGTCAATTAAAA
16608634 CTTTATA
1 CTTTATA
16608641 ATTTAGTCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 9 0.45
17 7 0.35
18 4 0.20
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.45
Consensus pattern (18 bp):
CTTTATAGTCAATTAAAA
Found at i:16610161 original size:99 final size:98
Alignment explanation
Indices: 16610030--16610227 Score: 351
Period size: 99 Copynumber: 2.0 Consensus size: 98
16610020 CAACTGAAAA
16610030 AAGTTGTTATGTATACCTCCGTCATTAAAAGTATATGCCACGACTTTGAGAAAAAGAAGTTTTTT
1 AAGTTGTTATGTATACCTCCGTCATTAAAAGTATATGCCACGACTTTGAGAAAAAGAAG-TTTTT
*
16610095 TTTGTGAATTACAAAAGGAAGACAAAGCTCTAAT
65 TTTGTGAATTACAAAAGGAAGACAAAGCCCTAAT
16610129 AAGTTGTTATGTATACCTCCGTCATTAAAAGTATATGCCACGACTTTGAGAAAAAGAAGTTTTTT
1 AAGTTGTTATGTATACCTCCGTCATTAAAAGTATATGCCACGACTTTGAGAAAAAGAAGTTTTTT
* * *
16610194 TTGTGAATTATAAGAGGAAGGCAAAGCCCTAAT
66 TTGTGAATTACAAAAGGAAGACAAAGCCCTAAT
16610227 A
1 A
16610228 GTAACGTGAC
Statistics
Matches: 95, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
98 36 0.38
99 59 0.62
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (98 bp):
AAGTTGTTATGTATACCTCCGTCATTAAAAGTATATGCCACGACTTTGAGAAAAAGAAGTTTTTT
TTGTGAATTACAAAAGGAAGACAAAGCCCTAAT
Found at i:16610999 original size:20 final size:21
Alignment explanation
Indices: 16610971--16611027 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
16610961 ATCATTCAAA
*
16610971 ATAATAAATTATAAAAAAT-C
1 ATAAAAAATTATAAAAAATAC
*
16610991 ATAAAAAA-TATTAAAAATTAC
1 ATAAAAAATTA-TAAAAAATAC
16611012 A-AAAAAATTTATAAAA
1 ATAAAAAA-TTATAAAA
16611028 GTGCAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
19 2 0.06
20 20 0.65
21 7 0.23
22 2 0.06
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (21 bp):
ATAAAAAATTATAAAAAATAC
Found at i:16611055 original size:19 final size:20
Alignment explanation
Indices: 16610971--16611027 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
16610961 ATCATTCAAA
16610971 ATAATAAATTATAAAAAAT-C
1 ATAA-AAATTATAAAAAATAC
* *
16610991 ATAAAAAATATTAAAAATTAC
1 ATAAAAATTA-TAAAAAATAC
*
16611012 AAAAAAATTTATAAAA
1 ATAAAAA-TTATAAAA
16611028 GTGCAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
19 5 0.17
20 11 0.37
21 12 0.40
22 2 0.07
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAAAAATTATAAAAAATAC
Found at i:16611055 original size:20 final size:19
Alignment explanation
Indices: 16610980--16611055 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 19
16610970 AATAATAAAT
*
16610980 TATAAAAAAT-CATAAAAAA
1 TATAAAAATTACA-AAAAAA
16610999 TATTAAAAATTACAAAAAAA
1 TA-TAAAAATTACAAAAAAA
* * *
16611019 TTTATAAAAGTGCAAAAAAA
1 TATA-AAAATTACAAAAAAA
*
16611039 TCATAAAAATTATAAAA
1 T-ATAAAAATTACAAAA
16611056 GTTATTATAA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
19 4 0.09
20 37 0.82
21 4 0.09
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.25
Consensus pattern (19 bp):
TATAAAAATTACAAAAAAA
Found at i:16612357 original size:467 final size:467
Alignment explanation
Indices: 16611481--16612422 Score: 1794
Period size: 467 Copynumber: 2.0 Consensus size: 467
16611471 TTACGTTCAT
*
16611481 ACCCCGACTAATAGTGGTCGCCAAAGTTGAAATCAATGGTTGAAACCAAAGAATGTCTACCCATT
1 ACCCCGACTAATAGTGGTCGCCAAAGTTGAAATCAATGCTTGAAACCAAAGAATGTCTACCCATT
16611546 TATGCTTCGGGGACATTGTAATAAGAGCTTTGCAACAAACCAGCGAACCTACTACACAATCGTGT
66 TATGCTTCGGGGACATTGTAATAAGAGCTTTGCAACAAACCAGCGAACCTACTACACAATCGTGT
16611611 AGTAGGACTTTTTACTTCTGCTTCAATTCCCACTTTAGCCGCAATAGTGGTCGAAGATGGTTTAA
131 AGTAGGACTTTTTACTTCTGCTTCAATTCCCACTTTAGCCGCAATAGTGGTCGAAGATGGTTTAA
16611676 CTCCATCAACCTCGACAAACTCAACATATAACTCCATTATAGCATTTTTGCTTTAGCAGTGCGAT
196 CTCCATCAACCTCGACAAACTCAACATATAACTCCATTATAGCATTTTTGCTTTAGCAGTGCGAT
16611741 GATATAACCGCCTCCAGCTCTAGCTCGCCTTTCACATAAAATAGCTCATACTTAAAGGGGTCAAC
261 GATATAACCGCCTCCAGCTCTAGCTCGCCTTTCACATAAAATAGCTCATACTTAAAGGGGTCAAC
*
16611806 CAATGCTAGCTATCTATATTGTAAACACGAAATTCTTCCTCGGCTCGAACCCCCAACTTCCTTCT
326 CAATGCTAGCTATCTATATTGTAAACACGAAATTCTTCCTCGACTCGAACCCCCAACTTCCTTCT
*
16611871 TGATTCTAGTTCGTAGCTCATGAAATTGAATGGTACGATTGAAAGCCAATTCCACAGACTAGGCT
391 TGATTCTAGTTCATAGCTCATGAAATTGAATGGTACGATTGAAAGCCAATTCCACAGACTAGGCT
*
16611936 CTTGCAAATATG
456 CTTACAAATATG
*
16611948 ACCCCGACTAATAGTGGTCGCCAAAGTTGAAATCGATGCTTGAAACCAAAGAATGTCTACCCATT
1 ACCCCGACTAATAGTGGTCGCCAAAGTTGAAATCAATGCTTGAAACCAAAGAATGTCTACCCATT
* * *
16612013 TATGCTTCGGGGACATTGTAATAAGAGCTTTGCAACAAACCAGTGAACCTACTCCATAATCGTGT
66 TATGCTTCGGGGACATTGTAATAAGAGCTTTGCAACAAACCAGCGAACCTACTACACAATCGTGT
*
16612078 AGTAGGACTTTTTACTTCTGCTTCGATTCCCACTTTAGCCGCAATAGTGGTCGAAGATGGTTTAA
131 AGTAGGACTTTTTACTTCTGCTTCAATTCCCACTTTAGCCGCAATAGTGGTCGAAGATGGTTTAA
16612143 CTCCATCAACCTCGACAAACTCAACATATAACTCCATTATAGCATTTTTGCTTTAGCAGTGCGAT
196 CTCCATCAACCTCGACAAACTCAACATATAACTCCATTATAGCATTTTTGCTTTAGCAGTGCGAT
*
16612208 GATATAACCGCCTCCAGCTCTAGCTCGCCTTTCACATAAAATAGCTTATACTTAAAGGGGTCAAC
261 GATATAACCGCCTCCAGCTCTAGCTCGCCTTTCACATAAAATAGCTCATACTTAAAGGGGTCAAC
16612273 CAATGCTAGCTATCTATATTGTAAACACGAAATTCTTCCTCGACTCGAACCCCCAACTTCCTTCT
326 CAATGCTAGCTATCTATATTGTAAACACGAAATTCTTCCTCGACTCGAACCCCCAACTTCCTTCT
16612338 TGATTCTAGTTCATAGCTCATGAAATTGAATGGTACGATTGAAAGCCAATTCCACAGACTAGGCT
391 TGATTCTAGTTCATAGCTCATGAAATTGAATGGTACGATTGAAAGCCAATTCCACAGACTAGGCT
16612403 CTTACAAATATG
456 CTTACAAATATG
16612415 ACCCCGAC
1 ACCCCGAC
16612423 ATCCGTAGTG
Statistics
Matches: 465, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
467 465 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (467 bp):
ACCCCGACTAATAGTGGTCGCCAAAGTTGAAATCAATGCTTGAAACCAAAGAATGTCTACCCATT
TATGCTTCGGGGACATTGTAATAAGAGCTTTGCAACAAACCAGCGAACCTACTACACAATCGTGT
AGTAGGACTTTTTACTTCTGCTTCAATTCCCACTTTAGCCGCAATAGTGGTCGAAGATGGTTTAA
CTCCATCAACCTCGACAAACTCAACATATAACTCCATTATAGCATTTTTGCTTTAGCAGTGCGAT
GATATAACCGCCTCCAGCTCTAGCTCGCCTTTCACATAAAATAGCTCATACTTAAAGGGGTCAAC
CAATGCTAGCTATCTATATTGTAAACACGAAATTCTTCCTCGACTCGAACCCCCAACTTCCTTCT
TGATTCTAGTTCATAGCTCATGAAATTGAATGGTACGATTGAAAGCCAATTCCACAGACTAGGCT
CTTACAAATATG
Found at i:16616895 original size:22 final size:20
Alignment explanation
Indices: 16616855--16616895 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
16616845 TTTATTATTT
*
16616855 ATTTAATAAAAAACTTTTAA
1 ATTTAATAAAAAACATTTAA
16616875 ATTTATATAAAAAACAATTTA
1 ATTTA-ATAAAAAAC-ATTTA
16616896 TTTAACTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTTAATAAAAAACATTTAA
Found at i:16616898 original size:20 final size:18
Alignment explanation
Indices: 16616851--16616900 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
16616841 ATATTTTATT
16616851 ATTTATTTAATAAAAAAC
1 ATTTATTTAATAAAAAAC
*
16616869 TTTTAAATTTATATAAAAAAC
1 ATTT--ATTTA-ATAAAAAAC
16616890 AATTTATTTAA
1 -ATTTATTTAA
16616901 CTTAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
18 3 0.12
19 1 0.04
20 10 0.38
21 9 0.35
22 3 0.12
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTATTTAATAAAAAAC
Found at i:16622675 original size:104 final size:104
Alignment explanation
Indices: 16622518--16622725 Score: 407
Period size: 104 Copynumber: 2.0 Consensus size: 104
16622508 CACTGGTAAG
16622518 CTACATAACTTAGTAAGTTCGCAAGTTCATCAATTTACCAAGTCTTATGAGATAAGCAACTCTAT
1 CTACATAACTTAGTAAGTTCGCAAGTTCATCAATTTACCAAGTCTTATGAGATAAGCAACTCTAT
16622583 AATCTGTCAAGTCAGCACAACTGGACTTCAAGAGTCGCT
66 AATCTGTCAAGTCAGCACAACTGGACTTCAAGAGTCGCT
*
16622622 CTACATAGCTTAGTAAGTTCGCAAGTTCATCAATTTACCAAGTCTTATGAGATAAGCAACTCTAT
1 CTACATAACTTAGTAAGTTCGCAAGTTCATCAATTTACCAAGTCTTATGAGATAAGCAACTCTAT
16622687 AATCTGTCAAGTCAGCACAACTGGACTTCAAGAGTCGCT
66 AATCTGTCAAGTCAGCACAACTGGACTTCAAGAGTCGCT
16622726 ATTCGTTTTT
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (104 bp):
CTACATAACTTAGTAAGTTCGCAAGTTCATCAATTTACCAAGTCTTATGAGATAAGCAACTCTAT
AATCTGTCAAGTCAGCACAACTGGACTTCAAGAGTCGCT
Found at i:16627964 original size:64 final size:63
Alignment explanation
Indices: 16627876--16627998 Score: 183
Period size: 64 Copynumber: 1.9 Consensus size: 63
16627866 TTGTAATTTG
* * * *
16627876 AAAATGTCTAATTTATTACCTGAACTATCAATACGTATTTTATTATGGTATTTGTATTTTTTAT
1 AAAATATCTAATGTAATACCTGAACTATCAATACGTATTTTATTATGGTACTTG-ATTTTTTAT
* *
16627940 AAAATATCTAATGTAATACTTGAACTATCAATATGTATTTTATTATGGTACTTGATTTT
1 AAAATATCTAATGTAATACCTGAACTATCAATACGTATTTTATTATGGTACTTGATTTT
16627999 AACACGGTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
63 5 0.09
64 48 0.91
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (63 bp):
AAAATATCTAATGTAATACCTGAACTATCAATACGTATTTTATTATGGTACTTGATTTTTTAT
Found at i:16628372 original size:16 final size:16
Alignment explanation
Indices: 16628353--16628388 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
16628343 AGTTATTTGT
16628353 TTTTAATTTAATTTAA
1 TTTTAATTTAATTTAA
* *
16628369 TTTTTATTTTATTTAA
1 TTTTAATTTAATTTAA
16628385 TTTT
1 TTTT
16628389 CATATAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTAATTTAATTTAA
Found at i:16631200 original size:3 final size:3
Alignment explanation
Indices: 16631182--16631218 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
16631172 TCATGTTTGG
*
16631182 AAT AAT TAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
16631219 GAAAAAACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.94
4 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:16631559 original size:24 final size:24
Alignment explanation
Indices: 16631504--16631566 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
16631494 ATTTAATTTT
*
16631504 AATTTTAATGTTTAATTTGATATTTG
1 AATTTT-AT-TTTAATTTGATATCTG
* *
16631530 AGTTTTTTTTTAATTT-AGTATCTG
1 AATTTTATTTTAATTTGA-TATCTG
16631554 AATTTTATTTTAA
1 AATTTTATTTTAA
16631567 ATTTTAGTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
23 1 0.03
24 24 0.77
25 1 0.03
26 5 0.16
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (24 bp):
AATTTTATTTTAATTTGATATCTG
Found at i:16631897 original size:58 final size:60
Alignment explanation
Indices: 16631761--16631924 Score: 158
Period size: 58 Copynumber: 2.7 Consensus size: 60
16631751 TTAATATAAT
* * *
16631761 ATTTGATACTTGAACTTGACACTTTTTTCCTAATTTGATACCTAAACTTTTTTTGGGGTCCA
1 ATTTGATACCTGAACTTGACACTTTTTT-CTAATTAGATACCTAAAC-TTTTTTGGGATCCA
* * *
16631823 ATCTGATA-CTCAAACTTGACACTTTTTT-TAAGTTAG-TACTTAAAC-TTTTTGGGATCCA
1 ATTTGATACCT-GAACTTGACACTTTTTTCTAA-TTAGATACCTAAACTTTTTTGGGATCCA
* ** *
16631881 ATTTGACACCTGAACTTGA-TTTTTTTTCTTAATTTGATACCTAA
1 ATTTGATACCTGAACTTGACACTTTTTTC-TAATTAGATACCTAA
16631925 TTTTTTTTAA
Statistics
Matches: 83, Mismatches: 13, Indels: 15
0.75 0.12 0.14
Matches are distributed among these distances:
57 6 0.07
58 28 0.34
59 11 0.13
60 11 0.13
61 4 0.05
62 23 0.28
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.45
Consensus pattern (60 bp):
ATTTGATACCTGAACTTGACACTTTTTTCTAATTAGATACCTAAACTTTTTTGGGATCCA
Found at i:16632221 original size:55 final size:57
Alignment explanation
Indices: 16632071--16632230 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 57
16632061 TTTAATAAAT
* * *
16632071 TTAGATACCAAATTAAGAAAAAAATGTCAAGTTCAAGTACCAAATTGGGTCCAAAAAAAA
1 TTAGATATCAAATTAAG-AAAAAATGTCAAGTTCAGGTACCAAATTGGAT-C-AAAAAAA
* * * * * *
16632131 TTTAGATGTCAAATTAGGAAAAAGTGTTAAATTCAGGTATCAAATTGGAT-AAAAAAA
1 -TTAGATATCAAATTAAGAAAAAATGTCAAGTTCAGGTACCAAATTGGATCAAAAAAA
* *
16632188 -TAGGTATCAAATTAAGAAAAAATGTCAAGTTCAGATACCAAAT
1 TTAGATATCAAATTAAGAAAAAATGTCAAGTTCAGGTACCAAAT
16632231 GTTATATTAA
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
55 35 0.43
57 7 0.09
60 26 0.32
61 14 0.17
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.26
Consensus pattern (57 bp):
TTAGATATCAAATTAAGAAAAAATGTCAAGTTCAGGTACCAAATTGGATCAAAAAAA
Found at i:16637804 original size:261 final size:261
Alignment explanation
Indices: 16637340--16638127 Score: 1459
Period size: 261 Copynumber: 3.0 Consensus size: 261
16637330 TAGTTCCTCC
16637340 TCTGTACAACTTGCCCCTAGATTAGCCACAAAAAGTGTCGGACATGGGCTAGCACTCTGCAAAAG
1 TCTGTACAACTTGCCCCTAGATTAGCCACAAAAAGTGTCGGACATGGGCTAGCACTCTGCAAAAG
* * *
16637405 TGAGAGACTGAAGAATTATTTTGCAAATGTATATGAGAAAAAAGGGCACTCAAATAATACTTTCC
66 TGAGAGACTGAAGAATTATTTTGCTAATGTATATGAGAAAAAAGGGCACTCTAATAATACTTTGC
16637470 CTAACAAGTTAAGTTTCATTGATAAGATTCACTACATGATTGAAAAATGCAACCTTTTAATGAAC
131 CTAACAAGTTAAGTTTCATTGATAAGATTCACTACATGATTGAAAAATGCAACCTTTTAATGAAC
* *
16637535 ACTTAGTTTATTTCTCTTCAAGGTTTATTTATTAACAGGCTCAAATTATTTCAATTGCAACGATG
196 ACTTAGTTTGTTTCTCTTCAAGGTTTATTTATTAACAGGCTCAAATTATTTCAATTGCAACCATG
16637600 A
261 A
16637601 TCTGTACAACTTGCCCCTAGATTAGCCACAAAAAGTGTCGGACATGGGCTAGCACTCTGCAAAAG
1 TCTGTACAACTTGCCCCTAGATTAGCCACAAAAAGTGTCGGACATGGGCTAGCACTCTGCAAAAG
* * *
16637666 TGAGAGACAGAAGAATTATCTTGCTAATGTATATGAGAAAAAAGGGCACTCTAATAATACGTTGC
66 TGAGAGACTGAAGAATTATTTTGCTAATGTATATGAGAAAAAAGGGCACTCTAATAATACTTTGC
16637731 CTAACAAGTTAAGTTTCATTGATAAGATTCACTACATGATTGAAAAATGCAACCTTTTAATGAAC
131 CTAACAAGTTAAGTTTCATTGATAAGATTCACTACATGATTGAAAAATGCAACCTTTTAATGAAC
16637796 ACTTAGTTTGTTTCTCTTCAAGGTTTATTTATTAACAGGCTCAAATTATTTCAATTGCAACCATG
196 ACTTAGTTTGTTTCTCTTCAAGGTTTATTTATTAACAGGCTCAAATTATTTCAATTGCAACCATG
16637861 A
261 A
*
16637862 TCTGTACAACTTGCCCCTAGATTAGCCACAAAAAGTGTCGGACATGGGCTAGCACTCTGCAAAAA
1 TCTGTACAACTTGCCCCTAGATTAGCCACAAAAAGTGTCGGACATGGGCTAGCACTCTGCAAAAG
*
16637927 TGAGAGACTGAAGAATTATTTTGCTAATGTATATGAGAAAAAAGGGCACACTAATAATACTTTGC
66 TGAGAGACTGAAGAATTATTTTGCTAATGTATATGAGAAAAAAGGGCACTCTAATAATACTTTGC
* * *
16637992 CTAACAAATTAAGTTTCATTGATAAGATTCACTACATGATTGGAAAATGAAACCTTTTAATGAAC
131 CTAACAAGTTAAGTTTCATTGATAAGATTCACTACATGATTGAAAAATGCAACCTTTTAATGAAC
16638057 ACTTAGTTTGTTTCTCTTCAAGGTTTATTTATTAACAGGCTCAAATTATTTCAATTGCAACCATG
196 ACTTAGTTTGTTTCTCTTCAAGGTTTATTTATTAACAGGCTCAAATTATTTCAATTGCAACCATG
16638122 A
261 A
16638123 TCTGT
1 TCTGT
16638128 TAGTCCAGGT
Statistics
Matches: 511, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
261 511 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (261 bp):
TCTGTACAACTTGCCCCTAGATTAGCCACAAAAAGTGTCGGACATGGGCTAGCACTCTGCAAAAG
TGAGAGACTGAAGAATTATTTTGCTAATGTATATGAGAAAAAAGGGCACTCTAATAATACTTTGC
CTAACAAGTTAAGTTTCATTGATAAGATTCACTACATGATTGAAAAATGCAACCTTTTAATGAAC
ACTTAGTTTGTTTCTCTTCAAGGTTTATTTATTAACAGGCTCAAATTATTTCAATTGCAACCATG
A
Found at i:16647893 original size:21 final size:22
Alignment explanation
Indices: 16647857--16647899 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
16647847 TAGCAAATGA
*
16647857 TTTTAAAATTATTAAAATTATT
1 TTTTAAAATTAATAAAATTATT
16647879 TTTTAAAA-TAATAAAATTATT
1 TTTTAAAATTAATAAAATTATT
16647900 AAATAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTAAAATTAATAAAATTATT
Found at i:16654465 original size:3 final size:3
Alignment explanation
Indices: 16654457--16654491 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
16654447 CGATTTGATT
16654457 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
16654492 TTGTATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:16669745 original size:17 final size:16
Alignment explanation
Indices: 16669722--16669762 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
16669712 ATAATAAAAA
16669722 TATAATTTTAT-TATT
1 TATAATTTTATATATT
16669737 T-TAATAATTTATATATT
1 TATAAT--TTTATATATT
16669754 TATAATTTT
1 TATAATTTT
16669763 TAAAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
14 4 0.18
15 1 0.05
16 8 0.36
17 5 0.23
18 4 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATAATTTTATATATT
Found at i:16669990 original size:16 final size:15
Alignment explanation
Indices: 16669953--16669992 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
16669943 TCATAGCTCC
16669953 TTAAATTTAATTTTT
1 TTAAATTTAATTTTT
*
16669968 TTCAATTTAATTTTT
1 TTAAATTTAATTTTT
16669983 TATAAATTTA
1 T-TAAATTTA
16669993 TGTTATGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTAAATTTAATTTTT
Found at i:16672022 original size:15 final size:16
Alignment explanation
Indices: 16672002--16672031 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
16671992 CTTCCCTATT
16672002 TTCTATTT-CTTTTAA
1 TTCTATTTACTTTTAA
16672017 TTCTATTTACTTTTA
1 TTCTATTTACTTTTA
16672032 TTTTTAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (16 bp):
TTCTATTTACTTTTAA
Found at i:16672024 original size:22 final size:22
Alignment explanation
Indices: 16671997--16672057 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
16671987 TTCGACTTCC
*
16671997 CTATTTTCTATTT-CTTTTAATT
1 CTATTTACT-TTTACTTTTAATT
*
16672019 CTATTTACTTTTATTTTTAATT
1 CTATTTACTTTTACTTTTAATT
* *
16672041 CTGTTT-CTTTTATTTTT
1 CTATTTACTTTTACTTTT
16672058 CCTTAGATCG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 14 0.40
22 21 0.60
ACGTcount: A:0.16, C:0.11, G:0.02, T:0.70
Consensus pattern (22 bp):
CTATTTACTTTTACTTTTAATT
Found at i:16672050 original size:21 final size:22
Alignment explanation
Indices: 16672011--16672057 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
16672001 TTTCTATTTC
16672011 TTTTAATTCTATTTACTTTTAT
1 TTTTAATTCTATTTACTTTTAT
*
16672033 TTTTAATTCTGTTT-CTTTTAT
1 TTTTAATTCTATTTACTTTTAT
16672054 TTTT
1 TTTT
16672058 CCTTAGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.17, C:0.09, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTTAATTCTATTTACTTTTAT
Found at i:16673389 original size:21 final size:21
Alignment explanation
Indices: 16673365--16673414 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
16673355 GAATTTCAGC
*
16673365 AGCAATCTATAGATTTTCAAA
1 AGCAAACTATAGATTTTCAAA
* *
16673386 AGCAAACTGTGGATTTTCAAA
1 AGCAAACTATAGATTTTCAAA
*
16673407 AGAAAACT
1 AGCAAACT
16673415 GAGGCATCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (21 bp):
AGCAAACTATAGATTTTCAAA
Found at i:16673415 original size:21 final size:21
Alignment explanation
Indices: 16673376--16673415 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
16673366 GCAATCTATA
*
16673376 GATTTTCAAAAGCAAACTGTG
1 GATTTTCAAAAGAAAACTGTG
16673397 GATTTTCAAAAGAAAACTG
1 GATTTTCAAAAGAAAACTG
16673416 AGGCATCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (21 bp):
GATTTTCAAAAGAAAACTGTG
Found at i:16675584 original size:105 final size:103
Alignment explanation
Indices: 16675416--16675608 Score: 237
Period size: 105 Copynumber: 1.9 Consensus size: 103
16675406 TGTGTTAGAT
* * * * * *
16675416 TGAGTAACCGAGGTGGAGTGCTTGGTTGTCATTTCACTTCGTGTCAAAAGGGCTAACGCATTCTA
1 TGAGTAACCGAGGTAGAGTGCTTGGGTATCATTTCACTTAGCGTCAAAAGGGCCAACGCATTCT-
16675481 CAAAAAAAAAAGAAAAGAAAAAATTGAGAGCATGTTGGGC
65 CAAAAAAAAAA-AAAAGAAAAAATTGAGAGCATGTTGGGC
* * *
16675521 TGAGTAACCG-GGATAGAGTGCTTGGGTATCATTTCATTTAGCGTCAAAAGGTCCATA-GTATTC
1 TGAGTAACCGAGG-TAGAGTGCTTGGGTATCATTTCACTTAGCGTCAAAAGGGCCA-ACGCATTC
* *
16675584 TTAAAGAAAAAAAAAAGAAAAAATT
64 TCAAAAAAAAAAAAAAGAAAAAATT
16675609 TACAAAATAA
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
103 13 0.17
104 11 0.15
105 50 0.67
106 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.25
Consensus pattern (103 bp):
TGAGTAACCGAGGTAGAGTGCTTGGGTATCATTTCACTTAGCGTCAAAAGGGCCAACGCATTCTC
AAAAAAAAAAAAAAGAAAAAATTGAGAGCATGTTGGGC
Found at i:16678078 original size:25 final size:23
Alignment explanation
Indices: 16678049--16678094 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
16678039 GTTGGATTCA
16678049 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
16678074 AATTAAATCTAAATAATAATT
1 AATTAAATCTAAAAAATAATT
16678095 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:16688166 original size:513 final size:512
Alignment explanation
Indices: 16687200--16688228 Score: 2004
Period size: 513 Copynumber: 2.0 Consensus size: 512
16687190 TTTTAATATA
16687200 ACAAAAAGTACATTAAAAGTCCCTACTTAAATTTGTAAAACTTGTTCATAAGTCCTTAAAATTAT
1 ACAAAAAGTACATTAAAAGTCCCTACTTAAATTTGTAAAACTTGTTCATAAGTCCTTAAAATTAT
16687265 TTTCAAAGTGTTGGACAAAACAAAATCTTAAAAAGCCTTGAAATAACCTTTTTTTGAAGTCTGGA
66 TTTCAAAGTGTTGGACAAAACAAAATCTTAAAAAGCCTTGAAATAACCTTTTTTTGAAGTCTGGA
16687330 AGACTTCTACCGATACTTAGTGGAAAAGTATCGGTAAAACACAAGGTAGAAAAACCTTTGTAAAT
131 AGACTTCTACCGATACTTAGTGGAAAAGTATCGGTAAAACACAAGGTAGAAAAACCTTTGTAAAT
*
16687395 GCTTCAGACTTCTACCGGTAAAACAGGACAAACTATCGATTCCTGCTTGACTTCTACCGATACAA
196 GCTTCAGACTTCTACCGGTAAAACAGGACAAACTACCGATTCCTGCTTGACTTCTACCGATACAA
*
16687460 CCATGACTTATACCGGTAGAACAAACTCCAGAGAGCAAAGAAGTTGTGGCCTAGGACTTCTACCG
261 CCATGACTTATACCGGTAAAACAAACTCCAGAGAGCAAAGAAGTTGTGGCCTAGGACTTCTACCG
*
16687525 ATACCTTGAAGGCTTCTATCGAAACAAGTCAAGTCAGTAGTCAAAGTTCAGCATCCCCTACACTC
326 ATACCTTGAAGGCTTCTATCGAAACAAGTCAAGTCAGTAGCCAAAGTTCAGCATCCCCTACACTC
*
16687590 CTACCGATACTCTGATGGGTTCTACCGATACCAAATGAAACCCTCAGAGTTATACCAATACAAGG
391 CTACCGAAACTCTGATGGGTTCTACCGATACCAAATGAAACCCTCAGAGTTATACCAATACAAGG
16687655 TTGAATCTACCGATACAACGACTCCAACGGTCACTTTGGGTAAAAGATTCTACCGAT
456 TTGAATCTACCGATACAACGACTCCAACGGTCACTTTGGGTAAAAGATTCTACCGAT
16687712 ACAAAAAGTACATTAAAAGTCCCTACTTAAATTTGTAAAACTTGTTCATAAGTCCTTAAAATTAT
1 ACAAAAAGTACATTAAAAGTCCCTACTTAAATTTGTAAAACTTGTTCATAAGTCCTTAAAATTAT
16687777 TTTCAAAGTGTTGGACAAAACAAAATCTTAAAAAGCCTTGAAATAACCTTTTTTTTGAAGTCTGG
66 TTTCAAAGTGTTGGACAAAACAAAATCTTAAAAAGCCTTGAAATAACC-TTTTTTTGAAGTCTGG
16687842 AAGACTTCTACCGATACTTAGTGGAAAAGTATCGGTAAAACACAAGGTAGAAAAACCTTTGTAAA
130 AAGACTTCTACCGATACTTAGTGGAAAAGTATCGGTAAAACACAAGGTAGAAAAACCTTTGTAAA
16687907 TGCTTCAGACTTCTACCGGTAAAACAGGACAAACTACCGATTCCTGCTTGACTTCTACCGATACA
195 TGCTTCAGACTTCTACCGGTAAAACAGGACAAACTACCGATTCCTGCTTGACTTCTACCGATACA
16687972 ACCATGACTTATACCGGTAAAACAAACTCCAGAGAGCAAAGAAGTTGTGGCCTAGGACTTCTACC
260 ACCATGACTTATACCGGTAAAACAAACTCCAGAGAGCAAAGAAGTTGTGGCCTAGGACTTCTACC
*
16688037 GATACCTTGAAGGCTTCTATCGAAACAAGTCAAGTCAGTAGCCAAAGTTCAGCATCCCCTGCACT
325 GATACCTTGAAGGCTTCTATCGAAACAAGTCAAGTCAGTAGCCAAAGTTCAGCATCCCCTACACT
16688102 CCTACCGAAACTCTGATGGGTTCTACCGATACCAAATGAAACCCTCAGAGTTATACCAATACAAG
390 CCTACCGAAACTCTGATGGGTTCTACCGATACCAAATGAAACCCTCAGAGTTATACCAATACAAG
16688167 GTTGAATCTACCGATACAACGACTCCAACGGTCACTTTGGGTAAAAGATTCTACCGAT
455 GTTGAATCTACCGATACAACGACTCCAACGGTCACTTTGGGTAAAAGATTCTACCGAT
16688225 ACAA
1 ACAA
16688229 GTGTACTTCT
Statistics
Matches: 511, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
512 113 0.22
513 398 0.78
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (512 bp):
ACAAAAAGTACATTAAAAGTCCCTACTTAAATTTGTAAAACTTGTTCATAAGTCCTTAAAATTAT
TTTCAAAGTGTTGGACAAAACAAAATCTTAAAAAGCCTTGAAATAACCTTTTTTTGAAGTCTGGA
AGACTTCTACCGATACTTAGTGGAAAAGTATCGGTAAAACACAAGGTAGAAAAACCTTTGTAAAT
GCTTCAGACTTCTACCGGTAAAACAGGACAAACTACCGATTCCTGCTTGACTTCTACCGATACAA
CCATGACTTATACCGGTAAAACAAACTCCAGAGAGCAAAGAAGTTGTGGCCTAGGACTTCTACCG
ATACCTTGAAGGCTTCTATCGAAACAAGTCAAGTCAGTAGCCAAAGTTCAGCATCCCCTACACTC
CTACCGAAACTCTGATGGGTTCTACCGATACCAAATGAAACCCTCAGAGTTATACCAATACAAGG
TTGAATCTACCGATACAACGACTCCAACGGTCACTTTGGGTAAAAGATTCTACCGAT
Found at i:16694035 original size:15 final size:15
Alignment explanation
Indices: 16694011--16694040 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16694001 TATGTGTATG
16694011 TATTTATTTATTATT
1 TATTTATTTATTATT
*
16694026 TATTTGTTTATTATT
1 TATTTATTTATTATT
16694041 CATTAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
TATTTATTTATTATT
Found at i:16694106 original size:23 final size:24
Alignment explanation
Indices: 16694052--16694109 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
16694042 ATTAAAATTA
16694052 TTCGTGAACATGTTCAATTATATG
1 TTCGTGAACATGTTCAATTATATG
* **
16694076 TTCATGAACATGTTCGTTTA-ATG
1 TTCGTGAACATGTTCAATTATATG
16694099 TTCGTGAACAT
1 TTCGTGAACAT
16694110 TAAATAAACG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 13 0.43
24 17 0.57
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (24 bp):
TTCGTGAACATGTTCAATTATATG
Found at i:16703893 original size:15 final size:16
Alignment explanation
Indices: 16703857--16703896 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
16703847 GATTGTAAAA
16703857 ATATAATTTATTATTT
1 ATATAATTTATTATTT
*
16703873 AAATAATTTA-TATTT
1 ATATAATTTATTATTT
*
16703888 TTATAATTT
1 ATATAATTT
16703897 TTAAAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATATAATTTATTATTT
Found at i:16706047 original size:14 final size:14
Alignment explanation
Indices: 16706030--16706068 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
16706020 GGTGAAGCAT
16706030 AAAAAATAAATTAA
1 AAAAAATAAATTAA
16706044 AAAAAATAAATTAA
1 AAAAAATAAATTAA
16706058 AAAAAATAAAT
1 AAAAAATAAAT
16706069 GACGATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAAATAAATTAA
Found at i:16706717 original size:11 final size:11
Alignment explanation
Indices: 16706701--16706739 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
16706691 TTAATGAAAT
*
16706701 TAAAATTAAAA
1 TAAAATCAAAA
*
16706712 TAAAATCGAAA
1 TAAAATCAAAA
*
16706723 TAAAATCAATA
1 TAAAATCAAAA
16706734 TAAAAT
1 TAAAAT
16706740 TACAAGTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (11 bp):
TAAAATCAAAA
Found at i:16706727 original size:22 final size:23
Alignment explanation
Indices: 16706696--16706739 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
16706686 TATATTTAAT
*
16706696 GAAATTAAAATTAAAATAAAATC
1 GAAATTAAAATCAAAATAAAATC
*
16706719 GAAA-TAAAATCAATATAAAAT
1 GAAATTAAAATCAAAATAAAAT
16706740 TACAAGTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (23 bp):
GAAATTAAAATCAAAATAAAATC
Found at i:16707350 original size:15 final size:16
Alignment explanation
Indices: 16707318--16707357 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
16707308 GAAAATATAT
* *
16707318 TAAAAAAATTTTATAC
1 TAAAATAATTTCATAC
16707334 TAAAATAATTTCA-AC
1 TAAAATAATTTCATAC
16707349 TAAAATAAT
1 TAAAATAAT
16707358 AACAAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAAATAATTTCATAC
Found at i:16707426 original size:23 final size:22
Alignment explanation
Indices: 16707396--16707444 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
16707386 TACAATATCC
* *
16707396 AAATAATATTAAAAACGATAATA
1 AAATAATAGTAAAAACG-TAAAA
16707419 AAATAATAGTAAAAACGTAAAA
1 AAATAATAGTAAAAACGTAAAA
16707441 AAAT
1 AAAT
16707445 TCAAACAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.22
Consensus pattern (22 bp):
AAATAATAGTAAAAACGTAAAA
Found at i:16714587 original size:15 final size:16
Alignment explanation
Indices: 16714553--16714591 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
16714543 TAATATTAAA
16714553 TAAATAAAAAATTATT
1 TAAATAAAAAATTATT
*
16714569 TAAATAATAAATT-TT
1 TAAATAAAAAATTATT
16714584 TAAA-AAAA
1 TAAATAAAA
16714592 TACTGATACG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 3 0.14
15 6 0.29
16 12 0.57
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAATAAAAAATTATT
Found at i:16715001 original size:17 final size:17
Alignment explanation
Indices: 16714979--16715012 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
16714969 AAAAAAATTC
*
16714979 ATTTAAATGTTATTTAA
1 ATTTAAATATTATTTAA
16714996 ATTTAAATATTATTTAA
1 ATTTAAATATTATTTAA
16715013 TTATTGTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATTTAAATATTATTTAA
Found at i:16717789 original size:6 final size:6
Alignment explanation
Indices: 16717778--16717819 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
16717768 TTCAGTCGCC
* * *
16717778 TGAGCT TGAGCT TGAGCC TGAGCC TGAGCT TAAGCT TGAGCT
1 TGAGCT TGAGCT TGAGCT TGAGCT TGAGCT TGAGCT TGAGCT
16717820 GCAACACTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (6 bp):
TGAGCT
Found at i:16717798 original size:18 final size:18
Alignment explanation
Indices: 16717775--16717819 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
16717765 ACTTTCAGTC
*
16717775 GCCTGAGCTTGAGCTTGA
1 GCCTGAGCTTGAGCTTAA
*
16717793 GCCTGAGCCTGAGCTTAA
1 GCCTGAGCTTGAGCTTAA
*
16717811 GCTTGAGCT
1 GCCTGAGCT
16717820 GCAACACTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (18 bp):
GCCTGAGCTTGAGCTTAA
Found at i:16721398 original size:27 final size:26
Alignment explanation
Indices: 16721338--16721403 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
16721328 ATAGTTTTGA
16721338 CAAAGGCACCACTAGTGCCGCCTACC
1 CAAAGGCACCACTAGTGCCGCCTACC
* * * *
16721364 CAGTAGGCACCATTGGTGTCGCCTACC
1 CA-AAGGCACCACTAGTGCCGCCTACC
16721391 CTAAAGGCACCAC
1 C-AAAGGCACCAC
16721404 CTGTCAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
26 2 0.06
27 29 0.91
28 1 0.03
ACGTcount: A:0.26, C:0.38, G:0.21, T:0.15
Consensus pattern (26 bp):
CAAAGGCACCACTAGTGCCGCCTACC
Found at i:16721736 original size:32 final size:31
Alignment explanation
Indices: 16721700--16721763 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 31
16721690 ATATTTATAT
16721700 TATTTAAGT-TATTAATTTTATTTTTTGTATTA
1 TATTTAAGTGTA-TAATTTT-TTTTTTGTATTA
**
16721732 TATTTTGGTGTATAATTTTTTTTTTGTATTA
1 TATTTAAGTGTATAATTTTTTTTTTGTATTA
16721763 T
1 T
16721764 TTATGTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 13 0.45
32 14 0.48
33 2 0.07
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.67
Consensus pattern (31 bp):
TATTTAAGTGTATAATTTTTTTTTTGTATTA
Found at i:16721853 original size:27 final size:27
Alignment explanation
Indices: 16721812--16721865 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
16721802 ATGTAAGGTG
* *
16721812 AGTGCCGCTTATCAGGTAAGCACCACT
1 AGTGCCGCCTATCAGATAAGCACCACT
* *
16721839 AGTGCCGCCTGTCAGATAGGCACCACT
1 AGTGCCGCCTATCAGATAAGCACCACT
16721866 CCTTGTACCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (27 bp):
AGTGCCGCCTATCAGATAAGCACCACT
Found at i:16745866 original size:20 final size:20
Alignment explanation
Indices: 16745843--16745921 Score: 54
Period size: 20 Copynumber: 3.9 Consensus size: 20
16745833 GCAAATACTT
*
16745843 AAATTTTATTAAAAATTAGA
1 AAATATTATTAAAAATTAGA
** *
16745863 AAATAAAAATAAAAATCGT-GA
1 AAATATTATTAAAAAT--TAGA
*
16745884 AAATATTATTAAAAAAATTATA
1 AAATATTATT--AAAAATTAGA
*
16745906 AAATTTTA-TAAAAATT
1 AAATATTATTAAAAATT
16745922 GTAAAAAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 11
0.69 0.14 0.17
Matches are distributed among these distances:
19 7 0.16
20 12 0.27
21 11 0.24
22 9 0.20
23 6 0.13
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (20 bp):
AAATATTATTAAAAATTAGA
Found at i:16745920 original size:19 final size:17
Alignment explanation
Indices: 16745891--16745963 Score: 60
Period size: 17 Copynumber: 4.1 Consensus size: 17
16745881 TGAAAATATT
*
16745891 ATTAAAAAAATTATAAA
1 ATTATAAAAATTATAAA
*
16745908 ATTTTATAAAAATTGTAAAAA
1 A--TTATAAAAA-T-TATAAA
16745929 ATTAT-AAAATATATAAA
1 ATTATAAAAAT-TATAAA
16745946 CATT-TAAAAATTATAAA
1 -ATTATAAAAATTATAAA
16745963 A
1 A
16745964 AAATTATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
16 1 0.02
17 14 0.30
18 12 0.26
19 12 0.26
20 1 0.02
21 6 0.13
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (17 bp):
ATTATAAAAATTATAAA
Found at i:16745928 original size:10 final size:10
Alignment explanation
Indices: 16745891--16745970 Score: 64
Period size: 10 Copynumber: 8.5 Consensus size: 10
16745881 TGAAAATATT
16745891 ATTA-AAAAA
1 ATTATAAAAA
*
16745900 ATTATAAAAT
1 ATTATAAAAA
*
16745910 TTTAT-AAAA
1 ATTATAAAAA
*
16745919 ATTGTAAAAA
1 ATTATAAAAA
*
16745929 ATTATAAAAT
1 ATTATAAAAA
*
16745939 A-TAT-AAAC
1 ATTATAAAAA
16745947 ATT-T-AAAA
1 ATTATAAAAA
16745955 ATTATAAAAAA
1 ATTAT-AAAAA
16745966 ATTAT
1 ATTAT
16745971 TATACCAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
8 11 0.20
9 15 0.27
10 21 0.38
11 9 0.16
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (10 bp):
ATTATAAAAA
Found at i:16745929 original size:21 final size:22
Alignment explanation
Indices: 16745871--16745933 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 22
16745861 GAAAATAAAA
* *
16745871 ATAAAAATCGTGAAAATATTATT
1 ATAAAAATTGT-AAAAAATTATT
* *
16745894 A-AAAAAAT-TATAAAATT-TT
1 ATAAAAATTGTAAAAAATTATT
16745913 ATAAAAATTGTAAAAAATTAT
1 ATAAAAATTGTAAAAAATTAT
16745934 AAAATATATA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 3 0.10
20 12 0.39
21 9 0.29
22 6 0.19
23 1 0.03
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.35
Consensus pattern (22 bp):
ATAAAAATTGTAAAAAATTATT
Found at i:16746214 original size:37 final size:38
Alignment explanation
Indices: 16746149--16746240 Score: 96
Period size: 38 Copynumber: 2.4 Consensus size: 38
16746139 TTTTTGATGC
16746149 ATTTTATAATTTTTTTAGGATCTCTATAAAATTTTACA
1 ATTTTATAATTTTTTTAGGATCTCTATAAAATTTTACA
* * * * * *
16746187 ATTTTTTATTTTTTTTA-GATTTTTATAAATTTTTTTCTA
1 ATTTTATAATTTTTTTAGGATCTCTATAAA-ATTTTAC-A
16746226 ATTTTAATAATTTTT
1 ATTTT-ATAATTTTT
16746241 ATTTTTTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
37 10 0.23
38 20 0.47
39 6 0.14
40 7 0.16
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.63
Consensus pattern (38 bp):
ATTTTATAATTTTTTTAGGATCTCTATAAAATTTTACA
Found at i:16746220 original size:21 final size:20
Alignment explanation
Indices: 16746194--16746240 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
16746184 ACAATTTTTT
*
16746194 ATTTTTTT-TAGATTTTTATAA
1 ATTTTTTTCTA-ATTTTAAT-A
16746215 ATTTTTTTCTAATTTTAATA
1 ATTTTTTTCTAATTTTAATA
16746235 ATTTTT
1 ATTTTT
16746241 ATTTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 15 0.62
22 2 0.08
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (20 bp):
ATTTTTTTCTAATTTTAATA
Found at i:16746230 original size:20 final size:21
Alignment explanation
Indices: 16746194--16746240 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
16746184 ACAATTTTTT
16746194 ATTTTTTTTAGATTTTT-ATAA
1 ATTTTTTTTAGATTTTTAAT-A
16746215 ATTTTTTTCTA-A-TTTTAATA
1 ATTTTTTT-TAGATTTTTAATA
16746235 ATTTTT
1 ATTTTT
16746241 ATTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 11 0.46
21 11 0.46
22 2 0.08
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (21 bp):
ATTTTTTTTAGATTTTTAATA
Found at i:16750273 original size:20 final size:20
Alignment explanation
Indices: 16750223--16750287 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
16750213 TTTGAAAAAA
*
16750223 TCAACGGTAAACGATCAAAG
1 TCAACGGTCAACGATCAAAG
* *
16750243 TCAACGATCAATGATCAAAG
1 TCAACGGTCAACGATCAAAG
16750263 TCAACGGTCAAC-AGTCAACAG
1 TCAACGGTCAACGA-TCAA-AG
16750284 TCAA
1 TCAA
16750288 TCAACACCGG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
19 1 0.03
20 31 0.82
21 6 0.16
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (20 bp):
TCAACGGTCAACGATCAAAG
Found at i:16750312 original size:21 final size:20
Alignment explanation
Indices: 16750288--16750332 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
16750278 CAACAGTCAA
**
16750288 TCAACACCGGTCAACGGTCGG
1 TCAACACCAATCAAC-GTCGG
*
16750309 TCAACGCCAATCAACGTCGG
1 TCAACACCAATCAACGTCGG
16750329 TCAA
1 TCAA
16750333 TGGTTTGACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.29, C:0.33, G:0.22, T:0.16
Consensus pattern (20 bp):
TCAACACCAATCAACGTCGG
Found at i:16750389 original size:15 final size:15
Alignment explanation
Indices: 16750369--16750398 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16750359 TGGTTCATTT
16750369 GGTTTGGTTCAAATG
1 GGTTTGGTTCAAATG
*
16750384 GGTTTGGTTTAAATG
1 GGTTTGGTTCAAATG
16750399 AATTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (15 bp):
GGTTTGGTTCAAATG
Found at i:16750408 original size:21 final size:21
Alignment explanation
Indices: 16750382--16750449 Score: 118
Period size: 21 Copynumber: 3.2 Consensus size: 21
16750372 TTGGTTCAAA
16750382 TGGGTTTGGTTTAAATGAATT
1 TGGGTTTGGTTTAAATGAATT
*
16750403 TGGGTTTGGTTTAAATGAATG
1 TGGGTTTGGTTTAAATGAATT
16750424 TGGGTTTGGTTTAAATAGAATT
1 TGGGTTTGGTTTAAAT-GAATT
16750446 TGGG
1 TGGG
16750450 CTTAATGGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
21 36 0.82
22 8 0.18
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (21 bp):
TGGGTTTGGTTTAAATGAATT
Found at i:16750853 original size:11 final size:11
Alignment explanation
Indices: 16750820--16750894 Score: 62
Period size: 11 Copynumber: 6.5 Consensus size: 11
16750810 AAGTGTGATT
*
16750820 AAAAGAGGAAG
1 AAAAGAGAAAG
*
16750831 AAAATAGAAAAG
1 AAAAGAG-AAAG
16750843 AAAAGAGAAAG
1 AAAAGAGAAAG
16750854 AAATA-AGAAATG
1 AAA-AGAGAAA-G
* *
16750866 AATGAGAAAAAG
1 AA-AAGAGAAAG
16750878 AAAAGAGAAAG
1 AAAAGAGAAAG
*
16750889 GAAAGA
1 AAAAGA
16750895 TGAGAGGCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
11 30 0.59
12 17 0.33
13 4 0.08
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.05
Consensus pattern (11 bp):
AAAAGAGAAAG
Found at i:16750862 original size:23 final size:23
Alignment explanation
Indices: 16750820--16750892 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
16750810 AAGTGTGATT
*
16750820 AAAAGAGGAAGAAAATAGAAAAG
1 AAAAGAGAAAGAAAATAGAAAAG
*
16750843 AAAAGAGAAAG-AAATAAGAAATG
1 AAAAGAGAAAGAAAAT-AGAAAAG
* * * *
16750866 AATGAGAAAAAGAAAAGAGAAAGG
1 AA-AAGAGAAAGAAAATAGAAAAG
16750890 AAA
1 AAA
16750893 GATGAGAGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
22 4 0.10
23 18 0.45
24 15 0.38
25 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.05
Consensus pattern (23 bp):
AAAAGAGAAAGAAAATAGAAAAG
Found at i:16757357 original size:20 final size:20
Alignment explanation
Indices: 16757332--16757380 Score: 89
Period size: 20 Copynumber: 2.4 Consensus size: 20
16757322 GTTTTTTGAA
16757332 AAAGTCAACGGTCAACGGTC
1 AAAGTCAACGGTCAACGGTC
16757352 AAAGTCAACGGTCAACGGTC
1 AAAGTCAACGGTCAACGGTC
16757372 AACAGTCAA
1 AA-AGTCAA
16757381 TCAACACCGG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 22 0.79
21 6 0.21
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.14
Consensus pattern (20 bp):
AAAGTCAACGGTCAACGGTC
Found at i:16757399 original size:7 final size:7
Alignment explanation
Indices: 16757335--16757380 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
16757325 TTTTGAAAAA
16757335 GTCAACG
1 GTCAACG
16757342 GTCAACG
1 GTCAACG
*
16757349 GTCAA-A
1 GTCAACG
16757355 GTCAACG
1 GTCAACG
16757362 GTCAACG
1 GTCAACG
*
16757369 GTCAACA
1 GTCAACG
16757376 GTCAA
1 GTCAA
16757381 TCAACACCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
6 5 0.14
7 30 0.86
ACGTcount: A:0.35, C:0.26, G:0.24, T:0.15
Consensus pattern (7 bp):
GTCAACG
Found at i:16757405 original size:21 final size:20
Alignment explanation
Indices: 16757367--16757425 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
16757357 CAACGGTCAA
**
16757367 CGGTCAACAGTCAATCAACAC
1 CGGTCAAC-GTCGGTCAACAC
*
16757388 CGGTCAACGGTCGGTCAACGC
1 CGGTCAAC-GTCGGTCAACAC
**
16757409 CAATCAACGTCGGTCAA
1 CGGTCAACGTCGGTCAA
16757426 TGGATTGACT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.31, C:0.32, G:0.22, T:0.15
Consensus pattern (20 bp):
CGGTCAACGTCGGTCAACAC
Found at i:16757482 original size:15 final size:15
Alignment explanation
Indices: 16757462--16757491 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16757452 TGGTTCATTT
16757462 GGTTTGGTTCAAATG
1 GGTTTGGTTCAAATG
*
16757477 GGTTTGGTTTAAATG
1 GGTTTGGTTCAAATG
16757492 AATTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (15 bp):
GGTTTGGTTCAAATG
Found at i:16757501 original size:21 final size:21
Alignment explanation
Indices: 16757475--16757542 Score: 118
Period size: 21 Copynumber: 3.2 Consensus size: 21
16757465 TTGGTTCAAA
16757475 TGGGTTTGGTTTAAATGAATT
1 TGGGTTTGGTTTAAATGAATT
*
16757496 TGGGTTTGGTTTAAATGAATG
1 TGGGTTTGGTTTAAATGAATT
16757517 TGGGTTTGGTTTAAATAGAATT
1 TGGGTTTGGTTTAAAT-GAATT
16757539 TGGG
1 TGGG
16757543 CTTAATGGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
21 36 0.82
22 8 0.18
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (21 bp):
TGGGTTTGGTTTAAATGAATT
Found at i:16757946 original size:11 final size:11
Alignment explanation
Indices: 16757913--16757987 Score: 62
Period size: 11 Copynumber: 6.5 Consensus size: 11
16757903 AAGTGTGATT
*
16757913 AAAAGAGGAAG
1 AAAAGAGAAAG
*
16757924 AAAATAGAAAAG
1 AAAAGAG-AAAG
16757936 AAAAGAGAAAG
1 AAAAGAGAAAG
16757947 AAATA-AGAAATG
1 AAA-AGAGAAA-G
* *
16757959 AATGAGAAAAAG
1 AA-AAGAGAAAG
16757971 AAAAGAGAAAG
1 AAAAGAGAAAG
*
16757982 GAAAGA
1 AAAAGA
16757988 TGAGAGGCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
11 30 0.59
12 17 0.33
13 4 0.08
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.05
Consensus pattern (11 bp):
AAAAGAGAAAG
Found at i:16757955 original size:23 final size:23
Alignment explanation
Indices: 16757913--16757985 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
16757903 AAGTGTGATT
*
16757913 AAAAGAGGAAGAAAATAGAAAAG
1 AAAAGAGAAAGAAAATAGAAAAG
*
16757936 AAAAGAGAAAG-AAATAAGAAATG
1 AAAAGAGAAAGAAAAT-AGAAAAG
* * * *
16757959 AATGAGAAAAAGAAAAGAGAAAGG
1 AA-AAGAGAAAGAAAATAGAAAAG
16757983 AAA
1 AAA
16757986 GATGAGAGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
22 4 0.10
23 18 0.45
24 15 0.38
25 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.05
Consensus pattern (23 bp):
AAAAGAGAAAGAAAATAGAAAAG
Done.