Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 64 of 182
Found at i:20696795 original size:58 final size:58
Alignment explanation
Indices: 20696689--20696814 Score: 182
Period size: 58 Copynumber: 2.2 Consensus size: 58
20696679 ATCATACTGT
* * * *
20696689 TACAGTTACAGATACAGTGATGTCATAGATATAGTAATAGATGCAGACATGATACATA
1 TACAGTTACAGATACAGTCATGTCATAGATACAATAATAGATGCAGACATGATACAGA
* *
20696747 TACAGTTACAGATACAGTCATGTCATAGATACAATTAT-GAATGTAGACATGATACAGA
1 TACAGTTACAGATACAGTCATGTCATAGATACAATAATAG-ATGCAGACATGATACAGA
20696805 TACAGTTACA
1 TACAGTTACA
20696815 AATGCAGACA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 1 0.02
58 60 0.98
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (58 bp):
TACAGTTACAGATACAGTCATGTCATAGATACAATAATAGATGCAGACATGATACAGA
Found at i:20696805 original size:29 final size:29
Alignment explanation
Indices: 20696729--20696830 Score: 98
Period size: 29 Copynumber: 3.5 Consensus size: 29
20696719 ATAGTAATAG
* * *
20696729 ATGCAGACATGATACATATACAGTTACAG
1 ATGCAGACATGATACAGATACAATTACAA
* * * **
20696758 ATACAGTCATG-TCATAGATACAATTATGA
1 ATGCAGACATGAT-ACAGATACAATTACAA
* *
20696787 ATGTAGACATGATACAGATACAGTTACAA
1 ATGCAGACATGATACAGATACAATTACAA
20696816 ATGCAGACATGATAC
1 ATGCAGACATGATAC
20696831 CCCCATCCGT
Statistics
Matches: 55, Mismatches: 16, Indels: 4
0.73 0.21 0.05
Matches are distributed among these distances:
28 1 0.02
29 53 0.96
30 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (29 bp):
ATGCAGACATGATACAGATACAATTACAA
Found at i:20696939 original size:36 final size:36
Alignment explanation
Indices: 20696865--20696949 Score: 116
Period size: 36 Copynumber: 2.4 Consensus size: 36
20696855 GTGTAACCCA
*
20696865 ACACACCATATAGGTATATAATACCTGTCCACCCCT
1 ACACACCATATAGGTATATAATACCTATCCACCCCT
* * * *
20696901 ACACACCATATAGGTATATAATATCTATCTAGCTCT
1 ACACACCATATAGGTATATAATACCTATCCACCCCT
*
20696937 ACACACCAAATAG
1 ACACACCATATAG
20696950 TGTCGGTATG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.26
Consensus pattern (36 bp):
ACACACCATATAGGTATATAATACCTATCCACCCCT
Found at i:20697545 original size:41 final size:41
Alignment explanation
Indices: 20697417--20697618 Score: 162
Period size: 41 Copynumber: 5.0 Consensus size: 41
20697407 CATATGTCTC
* * * * *
20697417 AAAACAATATACAAACACCCTGACACACACCCATGTGTTCC-
1 AAAACAGTATACACACACCTTGACACACGCCCATGTG-CCCT
* * * *
20697458 AGAATAGTATACACACACCATGTG-C-CA-ACCCATGTGCCCC
1 AAAACAGTATACACACACC-T-TGACACACGCCCATGTGCCCT
* * * *
20697498 AGAACAGTATAAACACACCTTGACATACGCTCATGTGCCCT
1 AAAACAGTATACACACACCTTGACACACGCCCATGTGCCCT
* * *
20697539 AAAACAGTATACACACACCCTGACACACACCCGTGTG-CCT
1 AAAACAGTATACACACACCTTGACACACGCCCATGTGCCCT
* * *
20697579 CCAAACAGTATACACACACCTTAACACACGCCCGTGTGCC
1 -AAAACAGTATACACACACCTTGACACACGCCCATGTGCC
20697619 AGTCCGTGTA
Statistics
Matches: 130, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
38 2 0.02
39 4 0.03
40 30 0.23
41 90 0.69
42 2 0.02
43 2 0.02
ACGTcount: A:0.35, C:0.35, G:0.12, T:0.17
Consensus pattern (41 bp):
AAAACAGTATACACACACCTTGACACACGCCCATGTGCCCT
Found at i:20697606 original size:53 final size:51
Alignment explanation
Indices: 20697549--20697714 Score: 152
Period size: 55 Copynumber: 3.1 Consensus size: 51
20697539 AAAACAGTAT
* * *
20697549 ACACACACCCTGACACACACCCGTGTGCCTCCAAACAGTATACACACACCTTA
1 ACACACGCCCTGAC-CA-GCCCGTGTACCTCCAAACAGTATACACACACCTTA
* * * *
20697602 ACACACGCCCGTGTGCCAGTCCGTGTACCTCCAAATAGTATACACACACACCCTA
1 ACACACGCCC-TG-ACCAGCCCGTGTACCTCCAAACAGTAT--ACACACACCTTA
* ** * *
20697657 ACACACGCTCATGTGTCAGCCCGTGTACCTCCAAACAGTATACACACAACTTG
1 ACACACGC-CCTG-ACCAGCCCGTGTACCTCCAAACAGTATACACACACCTTA
20697710 ACACA
1 ACACA
20697715 TGCTGGTGTG
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
53 42 0.45
54 4 0.04
55 47 0.50
56 1 0.01
ACGTcount: A:0.32, C:0.38, G:0.13, T:0.17
Consensus pattern (51 bp):
ACACACGCCCTGACCAGCCCGTGTACCTCCAAACAGTATACACACACCTTA
Found at i:20697617 original size:82 final size:81
Alignment explanation
Indices: 20697463--20697618 Score: 199
Period size: 82 Copynumber: 1.9 Consensus size: 81
20697453 GTTCCAGAAT
* * *
20697463 AGTATACACACACCATGTGCCAACCCATGTGCCCCAGAACAGTATAAACACACCTTGACATACGC
1 AGTATACACACACCATGTACCAACCCATGTGCCCCAGAACAGTATAAACACACCTTAACACACGC
*
20697528 TCATGTGCCCTAAAAC
66 CCATGTGCCCTAAAAC
* * *
20697544 AGTATACACACACCCTG-ACACACACCCGTGTGCCTCCA-AACAGTATACACACACCTTAACACA
1 AGTATACACACACCATGTAC-CA-ACCCATGTGCC-CCAGAACAGTATAAACACACCTTAACACA
*
20697607 CGCCCGTGTGCC
63 CGCCCATGTGCC
20697619 AGTCCGTGTA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
80 1 0.02
81 18 0.28
82 42 0.66
83 3 0.05
ACGTcount: A:0.33, C:0.37, G:0.13, T:0.17
Consensus pattern (81 bp):
AGTATACACACACCATGTACCAACCCATGTGCCCCAGAACAGTATAAACACACCTTAACACACGC
CCATGTGCCCTAAAAC
Found at i:20697681 original size:55 final size:55
Alignment explanation
Indices: 20697568--20697704 Score: 197
Period size: 55 Copynumber: 2.5 Consensus size: 55
20697558 CTGACACACA
* * *
20697568 CCCGTGTGCCTCCAAACAGTAT--ACACACACCTTAACACACGCCCGTGTGCCAG
1 CCCGTGTACCTCCAAACAGTATACACACACACCCTAACACACGCCCATGTGCCAG
* * * *
20697621 TCCGTGTACCTCCAAATAGTATACACACACACCCTAACACACGCTCATGTGTCAG
1 CCCGTGTACCTCCAAACAGTATACACACACACCCTAACACACGCCCATGTGCCAG
20697676 CCCGTGTACCTCCAAACAGTATACACACA
1 CCCGTGTACCTCCAAACAGTATACACACA
20697705 ACTTGACACA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 19 0.26
55 54 0.74
ACGTcount: A:0.30, C:0.37, G:0.14, T:0.19
Consensus pattern (55 bp):
CCCGTGTACCTCCAAACAGTATACACACACACCCTAACACACGCCCATGTGCCAG
Found at i:20697725 original size:53 final size:53
Alignment explanation
Indices: 20697568--20697741 Score: 213
Period size: 53 Copynumber: 3.2 Consensus size: 53
20697558 CTGACACACA
* * * *
20697568 CCCGTGTGCCTCCAAACAGTATACACACACCTTAACACACGCCCGTGTGCCAG
1 CCCGTGTACCTCCAAACAGTATACACACAACTTAACACACGCTCGTGTGTCAG
* * * *
20697621 TCCGTGTACCTCCAAATAGTATACACACACACCCTAACACACGCTCATGTGTCAG
1 CCCGTGTACCTCCAAACAGTATACACACA-A-CTTAACACACGCTCGTGTGTCAG
* * * *
20697676 CCCGTGTACCTCCAAACAGTATACACACAACTTGACACATGCTGGTGTGTCAA
1 CCCGTGTACCTCCAAACAGTATACACACAACTTAACACACGCTCGTGTGTCAG
*
20697729 CCCGTGTGCCTCC
1 CCCGTGTACCTCC
20697742 TGTAGCCTAT
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 55 0.54
54 1 0.01
55 46 0.45
ACGTcount: A:0.27, C:0.36, G:0.16, T:0.21
Consensus pattern (53 bp):
CCCGTGTACCTCCAAACAGTATACACACAACTTAACACACGCTCGTGTGTCAG
Found at i:20712134 original size:46 final size:46
Alignment explanation
Indices: 20712070--20712160 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
20712060 TTATAAGGGA
** *
20712070 AATAAAACCTAATATAATAAGGAAAATAACTAAAACTAAAACTCTT
1 AATAAAACCTAATATAATAAACAAAATAAATAAAACTAAAACTCTT
* * * * *
20712116 AATAAAGCCTGATCTAATAAACAAATTAAATAAATCTAAAACTCT
1 AATAAAACCTAATATAATAAACAAAATAAATAAAACTAAAACTCT
20712161 AATTGCAATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.25
Consensus pattern (46 bp):
AATAAAACCTAATATAATAAACAAAATAAATAAAACTAAAACTCTT
Found at i:20715054 original size:5 final size:5
Alignment explanation
Indices: 20715039--20715078 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
20715029 GGAGAAAAAT
*
20715039 ACCCA ATCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA
1 ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA
20715079 GAGCTAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.40, C:0.57, G:0.00, T:0.03
Consensus pattern (5 bp):
ACCCA
Found at i:20715349 original size:45 final size:46
Alignment explanation
Indices: 20715295--20715386 Score: 150
Period size: 45 Copynumber: 2.0 Consensus size: 46
20715285 ATTCACGAAC
*
20715295 GGGTCTAGGGTTATGTGATTTGTTTTTAGAGTAAAATAAAA-AAGA
1 GGGTCTAGGGTTATGTGATTTATTTTTAGAGTAAAATAAAATAAGA
* *
20715340 GGGTTTAGGGTTATGTGATTTATTTTTAGAGTATAATAAAATAAGA
1 GGGTCTAGGGTTATGTGATTTATTTTTAGAGTAAAATAAAATAAGA
20715386 G
1 G
20715387 AAAATATTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
45 38 0.88
46 5 0.12
ACGTcount: A:0.35, C:0.01, G:0.26, T:0.38
Consensus pattern (46 bp):
GGGTCTAGGGTTATGTGATTTATTTTTAGAGTAAAATAAAATAAGA
Found at i:20715481 original size:27 final size:27
Alignment explanation
Indices: 20715431--20715484 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
20715421 TTTTACAAGT
* **
20715431 AAGATTAGAAGTAGAGGTGTTTATGGA
1 AAGATTAGAAGTAGAGATACTTATGGA
*
20715458 AAGATTGGAAGTAGAGATACTTATGGA
1 AAGATTAGAAGTAGAGATACTTATGGA
20715485 CTAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.02, G:0.31, T:0.28
Consensus pattern (27 bp):
AAGATTAGAAGTAGAGATACTTATGGA
Found at i:20718416 original size:29 final size:29
Alignment explanation
Indices: 20718375--20718535 Score: 186
Period size: 29 Copynumber: 5.6 Consensus size: 29
20718365 AGTTTTCGAA
* *
20718375 ATGTGATCTTTTGTGGTTGATTCTGTTAT
1 ATGTGAGCCTTTGTGGTTGATTCTGTTAT
* ** *
20718404 GTGTGAGTATTTGTGAG-TGATTCTATTAT
1 ATGTGAGCCTTTGTG-GTTGATTCTGTTAT
*
20718433 ATGTGAGCCTTTGTGAG-TGATTTTGTTAT
1 ATGTGAGCCTTTGTG-GTTGATTCTGTTAT
20718462 ATGTGAGCCTTTGTGGTTGATTCTGTTAT
1 ATGTGAGCCTTTGTGGTTGATTCTGTTAT
* *
20718491 ATGTGAGCCTTCGTGGTTGATTCTGATA-
1 ATGTGAGCCTTTGTGGTTGATTCTGTTAT
*
20718519 ATG-GAGTCTTTGTGGTT
1 ATGTGAGCCTTTGTGGTT
20718536 ATCTCTATTT
Statistics
Matches: 115, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 12 0.10
28 4 0.03
29 98 0.85
30 1 0.01
ACGTcount: A:0.16, C:0.08, G:0.28, T:0.48
Consensus pattern (29 bp):
ATGTGAGCCTTTGTGGTTGATTCTGTTAT
Found at i:20730528 original size:28 final size:28
Alignment explanation
Indices: 20730473--20730528 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
20730463 AAACCGATCA
* **
20730473 ATGCCTTTGTAGCTATCTTTGTTTAAGG
1 ATGCCTTTGTAGCTATCTATGTCAAAGG
*
20730501 ATGCCTTTGTGGCTATCTATGTCAAAGG
1 ATGCCTTTGTAGCTATCTATGTCAAAGG
20730529 GAAGACTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (28 bp):
ATGCCTTTGTAGCTATCTATGTCAAAGG
Found at i:20733876 original size:11 final size:12
Alignment explanation
Indices: 20733861--20733893 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
20733851 TATAAAAAAT
20733861 ATAAATTTAAT-
1 ATAAATTTAATA
*
20733872 TTAAATTTAATA
1 ATAAATTTAATA
20733884 ATAAATTTAA
1 ATAAATTTAA
20733894 AAACAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATAAATTTAATA
Found at i:20734289 original size:23 final size:23
Alignment explanation
Indices: 20734263--20734335 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
20734253 ATAAAACATT
20734263 ATGGCAGGAGAGTTACAAAAATA
1 ATGGCAGGAGAGTTACAAAAATA
* *
20734286 ATGGCAAGAGAGTTACAAACATA
1 ATGGCAGGAGAGTTACAAAAATA
** *
20734309 ATTACCGGAGAGTTACAGAATAATA
1 ATGGCAGGAGAGTTACA-AA-AATA
20734334 AT
1 AT
20734336 AATTGATAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 34 0.83
24 2 0.05
25 5 0.12
ACGTcount: A:0.47, C:0.11, G:0.22, T:0.21
Consensus pattern (23 bp):
ATGGCAGGAGAGTTACAAAAATA
Found at i:20740305 original size:23 final size:23
Alignment explanation
Indices: 20740278--20740354 Score: 120
Period size: 23 Copynumber: 3.4 Consensus size: 23
20740268 ATTTAAAACA
*
20740278 AAACATTATGGCAAGAGAGTTAC
1 AAACATAATGGCAAGAGAGTTAC
* *
20740301 AAACATAATGACAGGAGAGTTAC
1 AAACATAATGGCAAGAGAGTTAC
20740324 AAACATAATGGCAAGAGAGTTAC
1 AAACATAATGGCAAGAGAGTTAC
20740347 AAA-ATAAT
1 AAACATAAT
20740355 AATAATTGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 5 0.10
23 44 0.90
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.19
Consensus pattern (23 bp):
AAACATAATGGCAAGAGAGTTAC
Found at i:20744240 original size:748 final size:749
Alignment explanation
Indices: 20742800--20744258 Score: 2020
Period size: 748 Copynumber: 1.9 Consensus size: 749
20742790 TCTTTTTATC
* * * *
20742800 TCATGGTCACCATTGTATCCTCTATAATGAAAATGATCATTATTCATACTGTTGGGGATTGACCC
1 TCATGGTCACCATTGTATCCTCTATAATGAAAATCATAATTATTCATACTGTCGGGGATCGACCC
* * *
20742865 TATAAGCAACAAATAAGTAAAATAGAGAAGATCAAACACACAAATATTTACGTGAAAAACTCCTT
66 TATAAGCAACAAACAAGTAAAATAGAGAAGATAAAACACACAAATATTTACGTGAAAAACTCCTC
*** *
20742930 CGAAGAGGATAAAAAACCACGGGCAAAGGAATCTTTGACTTTTCACTAAATAAGTAAACAAATGA
131 CGAAGAGGATAAAAAACCACAAACAAAGGAAGCTTTGACTTTTCACTAAATAAGTAAACAAATGA
* * *
20742995 GAGTACAATATGGAGAAAATAAATCTAAATGTATTAAACGTACAAACATAAAACCCGAATACAAA
196 GAGTACAATATGGAGAAAATAAACCTAAATGTACTAAACGTACAAACACAAAACCCGAATACAAA
* *
20743060 GACATAACGCGAAAACAAAATTCTCTCCATAGTTATCATGAAACTCTCACCAAAACTCATACGTG
261 GACATAACGCGAAAACAAAATTCTCTCCATAGTTACCATGAAACTCTCACCAAAACTCATACGCG
* **
20743125 ACTACATCTTGTCGCCTTCAAGAAAAGCCTTTTCTGATTAGCATGTCAAAACAATGATACAATGG
326 ACTACATCTTGTCGCCTTCAAGAAAAGCCTTTTCTGATTAGCATGTCAAAACAAGGATACAATAA
* * *
20743190 CTCCTTTAAATAGTCTTAGATTAGAGTTCTAACAATACTAAAATATCCCTAAAATAACCATAGTC
391 CCCCTTTAAATAGACTTAGATTAGAGTTCTAACAATACTAAAATATCCCTAAAATAACCATAATC
* * * * ** *
20743255 CAACTAGGAGAAGTAGTCTTGCTTGAATTCTAAAACGCGATTGCCAAATAGGAGAACATGTCTTA
456 CAACTAGGAAAAGCAGTCTTGCTTGAAGTCTAAAACGCGACTGCCAAATAGGAGAACACATCGTA
** ** * * *
20743320 ACATCGTGATGTGTCGGCTCTCCTCATCACGATGTCGATGTCGCATTTTCCTGGTGTTTACATCA
521 ACATCGTGACATGTCAACTCTCCTCATCACAACGTCGATGTCGCATTTGCCTGGTGTTTACATCA
* * * *
20743385 CATTATCCCAATGATCCCTACATGTTCGTTACGACGTCGAGCTTGTTTTGGCCTTTCTTCGGCTA
586 CATCATCCCAATGAGCCCTACATGTTCGTCACGACGTCGAGCCTGTTTTGGCCTTTCTTCGGCTA
* * * * * * *
20743450 TTCGTTGATTATTATCTTAAGTGCTTGTAAACTTTTCGATAAAT-GGAGGCATACCTCACAAATC
651 TTCGTTAATTATTACCTTAAGTGCCTGCAAACTTTCCGATAAATGGGAGGCACACCCCACAAATC
20743514 TCCACCTTGACTCGTATTTATCGCGCCTCTTTTT
716 TCCACCTTGACTCGTATTTATCGCGCCTCTTTTT
* *
20743548 TCATGGTCACCATTGTATCCTCTGTAATGGAAATCATAATTATTCATACTGTCGGGGATCGACCC
1 TCATGGTCACCATTGTATCCTCTATAATGAAAATCATAATTATTCATACTGTCGGGGATCGACCC
* * * *
20743613 TATAAGTAACGAACAAGTAAAATAGAGAAGATAAAACACACAAATATTTACGTGGAAAACTTCTC
66 TATAAGCAACAAACAAGTAAAATAGAGAAGATAAAACACACAAATATTTACGTGAAAAACTCCTC
* * * * *
20743678 CG-AGAGGATAAAAAGCCACAAACAAAGGAGGCTTTGGCTTTTCACTAAATGAGTAAATAAATGA
131 CGAAGAGGATAAAAAACCACAAACAAAGGAAGCTTTGACTTTTCACTAAATAAGTAAACAAATGA
* * *
20743742 GAGTGCAATATGGAGAAAATAAACCTAAATGTACTAAGCGTACAAACCCAAAACCCGAATACAAA
196 GAGTACAATATGGAGAAAATAAACCTAAATGTACTAAACGTACAAACACAAAACCCGAATACAAA
* * * *
20743807 -ATCATAACTCAGAAAACAAAATTCTCTTCATAGTTACCATGAAACTCTCAGCAAAACTCATATG
261 GA-CATAACGC-GAAAACAAAATTCTCTCCATAGTTACCATGAAACTCTCACCAAAACTCATACG
* *
20743871 CGACTACATCTTGTCGCCTTCAAGAAAAGCCTTTGT-TGATTGGCATGTCAAAAGAAGGATACAA
324 CGACTACATCTTGTCGCCTTCAAGAAAAGCCTTT-TCTGATTAGCATGTCAAAACAAGGATACAA
* *
20743935 TAACCCCTTTAAATAGACTTAGATTAGAGTTCTAATC-ATACTAAAATATCCCTGAAATAATCAT
388 TAACCCCTTTAAATAGACTTAGATTAGAGTTCTAA-CAATACTAAAATATCCCTAAAATAACCAT
*
20743999 AATCCAACTAGGAAAAGCAGT-TCTGCTTGAAGTCTAAAACAG-GACTGCCAACTAGGAGAACAC
452 AATCCAACTAGGAAAAGCAGTCT-TGCTTGAAGTCTAAAAC-GCGACTGCCAAATAGGAGAACAC
* * * *
20744062 ATCGTGACGTCGTGACATG-CTAACTCTCCTCGTCACAACGTTGATGTCGCATTTGCCTAGG-GT
515 ATCGTAACATCGTGACATGTC-AACTCTCCTCATCACAACGTCGATGTCGCATTTGCCT-GGTGT
* ** * * *
20744125 TTACATCACGTCATCCTGATGAGCCCTACCT-TCTCGTCATGACGTCGGGCCTGTTTTGGCCTTT
578 TTACATCACATCATCCCAATGAGCCCTACATGT-TCGTCACGACGTCGAGCCTGTTTTGGCCTTT
* * *
20744189 CTTCGGCTGTTCGTTAATTGTTGCCTTAAGTGCCTGCAAACTTTCCGATAAATGGGAGGCACACC
642 CTTCGGCTATTCGTTAATTATTACCTTAAGTGCCTGCAAACTTTCCGATAAATGGGAGGCACACC
20744254 CCACA
707 CCACA
20744259 CATACTAGTA
Statistics
Matches: 618, Mismatches: 83, Indels: 19
0.86 0.12 0.03
Matches are distributed among these distances:
746 1 0.00
747 122 0.20
748 476 0.77
749 19 0.03
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (749 bp):
TCATGGTCACCATTGTATCCTCTATAATGAAAATCATAATTATTCATACTGTCGGGGATCGACCC
TATAAGCAACAAACAAGTAAAATAGAGAAGATAAAACACACAAATATTTACGTGAAAAACTCCTC
CGAAGAGGATAAAAAACCACAAACAAAGGAAGCTTTGACTTTTCACTAAATAAGTAAACAAATGA
GAGTACAATATGGAGAAAATAAACCTAAATGTACTAAACGTACAAACACAAAACCCGAATACAAA
GACATAACGCGAAAACAAAATTCTCTCCATAGTTACCATGAAACTCTCACCAAAACTCATACGCG
ACTACATCTTGTCGCCTTCAAGAAAAGCCTTTTCTGATTAGCATGTCAAAACAAGGATACAATAA
CCCCTTTAAATAGACTTAGATTAGAGTTCTAACAATACTAAAATATCCCTAAAATAACCATAATC
CAACTAGGAAAAGCAGTCTTGCTTGAAGTCTAAAACGCGACTGCCAAATAGGAGAACACATCGTA
ACATCGTGACATGTCAACTCTCCTCATCACAACGTCGATGTCGCATTTGCCTGGTGTTTACATCA
CATCATCCCAATGAGCCCTACATGTTCGTCACGACGTCGAGCCTGTTTTGGCCTTTCTTCGGCTA
TTCGTTAATTATTACCTTAAGTGCCTGCAAACTTTCCGATAAATGGGAGGCACACCCCACAAATC
TCCACCTTGACTCGTATTTATCGCGCCTCTTTTT
Found at i:20748374 original size:20 final size:20
Alignment explanation
Indices: 20748349--20748393 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
20748339 AATTTCGAAA
20748349 TTTTTTATAAA-TATTTTAAT
1 TTTTTTA-AAACTATTTTAAT
*
20748369 TTTTTTAAAACTATTTTTAT
1 TTTTTTAAAACTATTTTAAT
20748389 TTTTT
1 TTTTT
20748394 GTTGAAAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTTAAAACTATTTTAAT
Found at i:20748717 original size:15 final size:15
Alignment explanation
Indices: 20748697--20748725 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
20748687 TTTTTGAAAA
20748697 GTTTAAAAACATTTT
1 GTTTAAAAACATTTT
20748712 GTTTAAAAACATTT
1 GTTTAAAAACATTT
20748726 AAGTTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (15 bp):
GTTTAAAAACATTTT
Found at i:20749706 original size:75 final size:75
Alignment explanation
Indices: 20749545--20749694 Score: 286
Period size: 75 Copynumber: 2.0 Consensus size: 75
20749535 TTATTTTTGT
20749545 AAATAAATA--TTTTTTATTTTTATCTTTTATTGTTTGAAATTTAATAAGTCATGATATTATTGT
1 AAATAAATATTTTTTTTATTTTTATCTTTTATTGTTTGAAATTTAATAAGTCATGATATTATTGT
20749608 TTGTTTTTAG
66 TTGTTTTTAG
20749618 AAATAAATATTTTTTTTATTTTTATCTTTTATTGTTTGAAATTTAATAAGTCATGATATTATTGT
1 AAATAAATATTTTTTTTATTTTTATCTTTTATTGTTTGAAATTTAATAAGTCATGATATTATTGT
20749683 TTGTTTTTAG
66 TTGTTTTTAG
20749693 AA
1 AA
20749695 TTTGTTATTT
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
73 9 0.12
75 66 0.88
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.57
Consensus pattern (75 bp):
AAATAAATATTTTTTTTATTTTTATCTTTTATTGTTTGAAATTTAATAAGTCATGATATTATTGT
TTGTTTTTAG
Found at i:20749739 original size:75 final size:75
Alignment explanation
Indices: 20749585--20749740 Score: 163
Period size: 75 Copynumber: 2.1 Consensus size: 75
20749575 TGTTTGAAAT
* * * *
20749585 TTAATAAGTCATGATATTATTGTTTGTTTTTAGAAATAAATATTTTTTTTATTTTTATCTTTTAT
1 TTAATAAGTCATGATATTATTGTTTGTTTTTAGAAATAAATATTTTTTTTACTTATATATTTCAT
**** *
20749650 TGTTTGAAAT
66 TGAAAAAAAG
* ***
20749660 TTAATAAGTCATGATATTATTGTTTGTTTTTAGAATTTGTTATTTTTGTTTTACTTATA-ATTTC
1 TTAATAAGTCATGATATTATTGTTTGTTTTTAGAAATAAATA-TTTT-TTTTACTTATATATTTC
20749724 A-TGAAAAAAAG
64 ATTGAAAAAAAG
20749735 TTAATA
1 TTAATA
20749741 GACTAAAATA
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
75 49 0.74
76 8 0.12
77 9 0.14
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.55
Consensus pattern (75 bp):
TTAATAAGTCATGATATTATTGTTTGTTTTTAGAAATAAATATTTTTTTTACTTATATATTTCAT
TGAAAAAAAG
Found at i:20755223 original size:44 final size:44
Alignment explanation
Indices: 20755164--20755253 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
20755154 CTTGAAATAA
* * * **
20755164 AATAAAAATTTTGATAATTATACGTTTAAAGTTAATTATAATTT
1 AATAAAAATTGTGATAATTACACATTTAAAAATAATTATAATTT
* *
20755208 AATAGAAATTGTGATAATTACATATTTAAAAATAATTATAATTT
1 AATAAAAATTGTGATAATTACACATTTAAAAATAATTATAATTT
20755252 AA
1 AA
20755254 ATTACAATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (44 bp):
AATAAAAATTGTGATAATTACACATTTAAAAATAATTATAATTT
Found at i:20755244 original size:18 final size:17
Alignment explanation
Indices: 20755221--20755254 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
20755211 AGAAATTGTG
20755221 ATAATTACATATTTAAAA
1 ATAATTACA-ATTTAAAA
*
20755239 ATAATTATAATTTAAA
1 ATAATTACAATTTAAA
20755255 TTACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAATTACAATTTAAAA
Found at i:20755763 original size:21 final size:21
Alignment explanation
Indices: 20755737--20755778 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
20755727 AGACTGAGCA
20755737 AGATCTGTTTTAACCTATCCC
1 AGATCTGTTTTAACCTATCCC
20755758 AGATCTGTTTTAACCTATCCC
1 AGATCTGTTTTAACCTATCCC
20755779 TCTACGTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.38
Consensus pattern (21 bp):
AGATCTGTTTTAACCTATCCC
Found at i:20759226 original size:17 final size:17
Alignment explanation
Indices: 20759204--20759242 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
20759194 CTCCACCTTG
* * *
20759204 ACAAGAATTCTCTACTA
1 ACAAGAACTCTCAACGA
20759221 ACAAGAACTCTCAACGA
1 ACAAGAACTCTCAACGA
20759238 ACAAG
1 ACAAG
20759243 TTCTCCACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.26, G:0.10, T:0.18
Consensus pattern (17 bp):
ACAAGAACTCTCAACGA
Found at i:20760869 original size:41 final size:41
Alignment explanation
Indices: 20760812--20760894 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
20760802 TTGGTACATG
20760812 TCGCACACCACTAAGAGTTCTAATGACCCCATCAAACATAT
1 TCGCACACCACTAAGAGTTCTAATGACCCCATCAAACATAT
20760853 TCGCACACCACTAAGAGTTCTAATGACCCCATCAAACATAT
1 TCGCACACCACTAAGAGTTCTAATGACCCCATCAAACATAT
20760894 T
1 T
20760895 TATTTTGATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.36, C:0.31, G:0.10, T:0.23
Consensus pattern (41 bp):
TCGCACACCACTAAGAGTTCTAATGACCCCATCAAACATAT
Found at i:20771015 original size:24 final size:24
Alignment explanation
Indices: 20770962--20771015 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
20770952 AATATCTTCA
20770962 AAAAATATTATAATAAATTTAAAT
1 AAAAATATTATAATAAATTTAAAT
** * *
20770986 TTAAATTTTAT-ATTAATATTAAAT
1 AAAAATATTATAATAAAT-TTAAAT
20771010 AAAAAT
1 AAAAAT
20771016 CCCTTCCCCA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAAATATTATAATAAATTTAAAT
Found at i:20771468 original size:25 final size:23
Alignment explanation
Indices: 20771435--20771491 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 23
20771425 CGAGGAGATT
*
20771435 TTTATTTAATATTAATATAATTATA
1 TTTATTTAATATCAATATAA--ATA
20771460 TTTATTTAATATCAATATAAATA
1 TTTATTTAATATCAATATAAATA
*
20771483 TTAATTTAA
1 TTTATTTAA
20771492 AAATTTAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 11 0.37
25 19 0.63
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTATTTAATATCAATATAAATA
Found at i:20772239 original size:18 final size:19
Alignment explanation
Indices: 20772216--20772258 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
20772206 AAGTTAATGT
20772216 ATTTTTTAAAAATATTT-A
1 ATTTTTTAAAAATATTTCA
* *
20772234 ATTTTTTAATAATTTTTCA
1 ATTTTTTAAAAATATTTCA
20772253 ATTTTT
1 ATTTTT
20772259 AATTTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTTTAAAAATATTTCA
Found at i:20772259 original size:18 final size:18
Alignment explanation
Indices: 20772216--20772279 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
20772206 AAGTTAATGT
*
20772216 ATTTTTTAAAAATATTTA
1 ATTTTTTAATAATATTTA
*
20772234 ATTTTTTAATAATTTTTCA
1 ATTTTTTAATAATATTT-A
20772253 A-TTTTTAATTTAA-ATTTA
1 ATTTTTTAA--TAATATTTA
*
20772271 ACTTTTTAA
1 ATTTTTTAA
20772280 ATTTTAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 24 0.62
19 12 0.31
20 3 0.08
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTTTAATAATATTTA
Found at i:20772805 original size:31 final size:30
Alignment explanation
Indices: 20772767--20772894 Score: 115
Period size: 31 Copynumber: 4.3 Consensus size: 30
20772757 TTAATATGAT
20772767 ATTTGGTA-TCTGAACTTGACACTTTTTTCTA
1 ATTTGGTACT-TGAACTTGACA-TTTTTTCTA
* * *
20772798 ATTTGGTACCT-AAATT----TTTTTATCCA
1 ATTTGGTACTTGAACTTGACATTTTT-TCTA
* * *
20772824 AATTAGTACTTGAACTTGACACTTTTTCCTA
1 ATTTGGTACTTGAACTTGACA-TTTTTTCTA
20772855 ATTTGGTACTTGAACTTGACATTTTTTCCTA
1 ATTTGGTACTTGAACTTGACATTTTTT-CTA
20772886 ATTTGGTAC
1 ATTTGGTAC
20772895 CTAAGCTTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
25 5 0.07
26 11 0.14
27 4 0.05
30 9 0.12
31 42 0.55
32 5 0.07
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (30 bp):
ATTTGGTACTTGAACTTGACATTTTTTCTA
Found at i:20773278 original size:30 final size:30
Alignment explanation
Indices: 20773242--20773303 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
20773232 ACCCCAAAAA
* * *
20773242 TTTAAGTACTAACTTA-AAAAAAGTGTCAAG
1 TTTAAGTACCAAATTAGAAAAAA-TATCAAG
20773272 TTTAAGTACCAAATTAGAAAAAATATCAAG
1 TTTAAGTACCAAATTAGAAAAAATATCAAG
20773302 TT
1 TT
20773304 CATTTACCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.48, C:0.10, G:0.11, T:0.31
Consensus pattern (30 bp):
TTTAAGTACCAAATTAGAAAAAATATCAAG
Found at i:20776285 original size:41 final size:41
Alignment explanation
Indices: 20776218--20776476 Score: 358
Period size: 41 Copynumber: 6.3 Consensus size: 41
20776208 ACTTGATGTA
* * *
20776218 TAAATGGAAGACTTATGTCTCAAAATGAGCATGAGATTATAT
1 TAAA-GGAAGACTCATGACTCGAAATGAGCATGAGATTATAT
*
20776260 TAAAGGAAGACTCGTGACTCGAAATGAGCATGAGATTATAT
1 TAAAGGAAGACTCATGACTCGAAATGAGCATGAGATTATAT
* *
20776301 TAAAGGAAGACTCGTGACTCGAAATGAGCATGAGTTTATAT
1 TAAAGGAAGACTCATGACTCGAAATGAGCATGAGATTATAT
*
20776342 TAAAGGAAGACTCATGACTCAAAATGAGCATGAGATTATAT
1 TAAAGGAAGACTCATGACTCGAAATGAGCATGAGATTATAT
* *** *
20776383 TAAAGGAAGACTCATGCCTCGGGGTGAGCATGATATTATAT
1 TAAAGGAAGACTCATGACTCGAAATGAGCATGAGATTATAT
** *
20776424 TAAAGGAAGACTCATGACTCGGGATGAGCATGTGA-TATATT
1 TAAAGGAAGACTCATGACTCGAAATGAGCATGAGATTATA-T
20776465 TAAAGGAAGACT
1 TAAAGGAAGACT
20776477 TATGGTTCTG
Statistics
Matches: 198, Mismatches: 18, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
40 4 0.02
41 190 0.96
42 4 0.02
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (41 bp):
TAAAGGAAGACTCATGACTCGAAATGAGCATGAGATTATAT
Found at i:20776524 original size:81 final size:81
Alignment explanation
Indices: 20776243--20776524 Score: 275
Period size: 82 Copynumber: 3.5 Consensus size: 81
20776233 TGTCTCAAAA
* ** **
20776243 TGAGCATGAGATTATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGATTATATTAAAGGA
1 TGAGCATAAGATTATATTAAAGGAAGACTCACGACTCGGGATGAGCATGAGATTATATTAAAGGA
* * **
20776308 AGACTCGTGACTCGAAA
66 AGACTCATGCCTCG-GG
* * * ***
20776325 TGAGCATGAGTTTATATTAAAGGAAGACTCATGACTCAAAATGAGCATGAGATTATATTAAAGGA
1 TGAGCATAAGATTATATTAAAGGAAGACTCACGACTCGGGATGAGCATGAGATTATATTAAAGGA
20776390 AGACTCATGCCTCGGGG
66 AGACTCATGCCTC-GGG
* * * *
20776407 TGAGCATGATATTATATTAAAGGAAGACTCATGACTCGGGATGAGCATGTGA-TATATTTAAAGG
1 TGAGCATAAGATTATATTAAAGGAAGACTCACGACTCGGGATGAGCATGAGATTATA-TTAAAGG
* ** *
20776471 AAGACTTATGGTTC-TG
65 AAGACTCATGCCTCGGG
20776487 TAGAGCATAAGATTAT-TTAAAAGGAAGA-TCTACGACTC
1 T-GAGCATAAGATTATATT-AAAGGAAGACTC-ACGACTC
20776525 AGTTGTTAAA
Statistics
Matches: 175, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
80 6 0.03
81 31 0.18
82 137 0.78
83 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (81 bp):
TGAGCATAAGATTATATTAAAGGAAGACTCACGACTCGGGATGAGCATGAGATTATATTAAAGGA
AGACTCATGCCTCGGG
Found at i:20779757 original size:31 final size:32
Alignment explanation
Indices: 20779722--20779782 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
20779712 TTTTAAATAA
20779722 GAGGTTTTC-GCTATGTTTTTGTGAGTTGGCT
1 GAGGTTTTCTGCTATGTTTTTGTGAGTTGGCT
*
20779753 GAGGTTTTCTTCTATGTTTTTGTGAGTTGG
1 GAGGTTTTCTGCTATGTTTTTGTGAGTTGG
20779783 TTAAGTGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 9 0.32
32 19 0.68
ACGTcount: A:0.10, C:0.08, G:0.31, T:0.51
Consensus pattern (32 bp):
GAGGTTTTCTGCTATGTTTTTGTGAGTTGGCT
Found at i:20783337 original size:24 final size:23
Alignment explanation
Indices: 20783302--20783346 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
20783292 ACAACCCACA
*
20783302 AATAATAACCAATAA-CAAAATTT
1 AATAAAAACCAA-AATCAAAATTT
20783325 AATAAAAACCCAAAATCAAAAT
1 AATAAAAA-CCAAAATCAAAAT
20783347 AATAATAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.64, C:0.16, G:0.00, T:0.20
Consensus pattern (23 bp):
AATAAAAACCAAAATCAAAATTT
Found at i:20784530 original size:25 final size:26
Alignment explanation
Indices: 20784479--20784531 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
20784469 AACGATCAAC
*
20784479 GGGTCGGGGTCGGGTTCGACGGATTT
1 GGGTCAGGGTCGGGTTCGACGGATTT
*
20784505 GGGTCAGGTTCGGG-TCGACCGG-TTT
1 GGGTCAGGGTCGGGTTCGA-CGGATTT
20784530 GG
1 GG
20784532 TCTACTTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.08, C:0.17, G:0.49, T:0.26
Consensus pattern (26 bp):
GGGTCAGGGTCGGGTTCGACGGATTT
Found at i:20790416 original size:6 final size:6
Alignment explanation
Indices: 20790405--20790429 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
20790395 AATCATTCAC
20790405 AAATAT AAATAT AAATAT AAATAT A
1 AAATAT AAATAT AAATAT AAATAT A
20790430 TTATTTAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:20790567 original size:24 final size:23
Alignment explanation
Indices: 20790532--20790576 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
20790522 ACAACCCACA
*
20790532 AATAATAACCAATAA-CAAAATTT
1 AATAAAAACCAA-AATCAAAATTT
20790555 AATAAAAACCCAAAATCAAAAT
1 AATAAAAA-CCAAAATCAAAAT
20790577 AATAATAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.64, C:0.16, G:0.00, T:0.20
Consensus pattern (23 bp):
AATAAAAACCAAAATCAAAATTT
Found at i:20791676 original size:7 final size:7
Alignment explanation
Indices: 20791664--20791756 Score: 60
Period size: 7 Copynumber: 13.1 Consensus size: 7
20791654 CAAAGTCAAA
20791664 GTCAACG
1 GTCAACG
20791671 GTCAACG
1 GTCAACG
* *
20791678 ATCAATG
1 GTCAACG
* *
20791685 GTCAGCT
1 GTCAACG
*
20791692 GTCAATG
1 GTCAACG
*
20791699 GTTAACG
1 GTCAACG
*
20791706 GTCAACA
1 GTCAACG
*
20791713 GTCAATG
1 GTCAACG
20791720 GTCAACG
1 GTCAACG
* *
20791727 ATCAACT
1 GTCAACG
** *
20791734 GTTTATG
1 GTCAACG
20791741 AGTCAACG
1 -GTCAACG
20791749 GTCAACG
1 GTCAACG
20791756 G
1 G
20791757 GTTGGGTCAG
Statistics
Matches: 59, Mismatches: 26, Indels: 2
0.68 0.30 0.02
Matches are distributed among these distances:
7 55 0.93
8 4 0.07
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24
Consensus pattern (7 bp):
GTCAACG
Found at i:20791708 original size:21 final size:21
Alignment explanation
Indices: 20791664--20791754 Score: 83
Period size: 21 Copynumber: 4.3 Consensus size: 21
20791654 CAAAGTCAAA
* * * *
20791664 GTCAACGGTCAACGATCAATG
1 GTCAACTGTCAATGGTCAACG
* *
20791685 GTCAGCTGTCAATGGTTAACG
1 GTCAACTGTCAATGGTCAACG
*
20791706 GTCAACAGTCAATGGTCAACG
1 GTCAACTGTCAATGGTCAACG
* **
20791727 ATCAACTGTTTATGAGTCAACG
1 GTCAACTGTCAATG-GTCAACG
20791749 GTCAAC
1 GTCAAC
20791755 GGGTTGGGTC
Statistics
Matches: 55, Mismatches: 14, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
21 43 0.78
22 12 0.22
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (21 bp):
GTCAACTGTCAATGGTCAACG
Found at i:20791852 original size:5 final size:5
Alignment explanation
Indices: 20791842--20791866 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
20791832 GTTTGACTTG
20791842 GGTTT GGTTT GGTTT GGTTT GGTTT
1 GGTTT GGTTT GGTTT GGTTT GGTTT
20791867 TTAAAGGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.40, T:0.60
Consensus pattern (5 bp):
GGTTT
Found at i:20791863 original size:21 final size:21
Alignment explanation
Indices: 20791812--20791863 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
20791802 CTTGGTTTAC
20791812 TTGGTTTGGGGATTGGGTTAGT
1 TTGGTTT-GGGATTGGGTTAGT
** * * *
20791834 TTGACTTGGGTTTGGTTTGGT
1 TTGGTTTGGGATTGGGTTAGT
20791855 TTGGTTTGG
1 TTGGTTTGG
20791864 TTTTTAAAGG
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.06, C:0.02, G:0.42, T:0.50
Consensus pattern (21 bp):
TTGGTTTGGGATTGGGTTAGT
Found at i:20794538 original size:3 final size:3
Alignment explanation
Indices: 20794532--20794563 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
20794522 ATAAAAAATA
20794532 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
20794564 ATAATAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:20794568 original size:3 final size:3
Alignment explanation
Indices: 20794562--20794609 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
20794552 CTACTACTAC
20794562 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
20794610 AGATCCTCAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:20795402 original size:28 final size:28
Alignment explanation
Indices: 20795346--20795403 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
20795336 TTGAATTGCT
*
20795346 TCGAGAGTTCAAGGACGTATTTTCATGG
1 TCGAGAGTTCAAGGACGTATTTGCATGG
*
20795374 TCGAGAGTTCAAGGACGTATTTGCGTGG
1 TCGAGAGTTCAAGGACGTATTTGCATGG
20795402 TC
1 TC
20795404 ATTCCAAGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (28 bp):
TCGAGAGTTCAAGGACGTATTTGCATGG
Found at i:20797261 original size:96 final size:96
Alignment explanation
Indices: 20797077--20797268 Score: 221
Period size: 96 Copynumber: 2.0 Consensus size: 96
20797067 AAGTTTGGAG
* ** * * *
20797077 AAGGATATTTAATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTGAGGCACAAATTTTTA
1 AAGGATATTCAATTATCTCGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTGA
* *
20797142 GAACCGAAGATAAGGAAACATTGCCTCGATT
66 GAACCGAAAATAAAGAAACATTGCCTCGATT
* *
20797173 AAGGATATTCGATTATTTCGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCGTA-AAATTTT
1 AAGGATATTCAATTATCTCGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGGC--ACAAATTTT
*
20797237 GA-AACTC-AAAATAAA-AGAATATTGCCTCGATT
64 GAGAAC-CGAAAATAAAGA-AACATTGCCTCGATT
20797269 TTAAAGTTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
95 1 0.01
96 70 0.86
97 9 0.11
98 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.30
Consensus pattern (96 bp):
AAGGATATTCAATTATCTCGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTGA
GAACCGAAAATAAAGAAACATTGCCTCGATT
Found at i:20797710 original size:58 final size:58
Alignment explanation
Indices: 20797612--20797863 Score: 269
Period size: 58 Copynumber: 4.3 Consensus size: 58
20797602 AATCGGGATC
* * ** *
20797612 AAAATAGAATTTTTGGATACCAG-GGGTAAAATGGTAATTTTTGGAAGTTTT-AGGGT-T
1 AAAATGGAATTTTTGGAAATTAGAGGGTAAAAT-GTAATTTTTGGAAGTTTTGA-GGTCA
* *
20797669 AAAATGGAATTTTTGGAAATTAGAGGGTAAAAGTGTAATTTTTTGAATTTTTGAGGTC-
1 AAAATGGAATTTTTGGAAATTAGAGGGTAAAA-TGTAATTTTTGGAAGTTTTGAGGTCA
* *
20797727 AAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAGTTTTGAGGTCA
1 AAAATGGAATTTTTGGAAATTAGAGGGT-AAAATGTAATTTTTGGAAGTTTTGAGGTCA
* * * * * * *
20797786 AAAATGGAATTTTTGGAAGTTTGGGGGGTAAAATATAATTTTTTGGAAATTGTGGGGTCA
1 AAAATGGAATTTTTGGAA-ATTAGAGGGTAAAATGTAA-TTTTTGGAAGTTTTGAGGTCA
*
20797846 AAAATGTAATTTTTGGAA
1 AAAATGGAATTTTTGGAA
20797864 GTTTCATGGT
Statistics
Matches: 169, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
57 19 0.11
58 76 0.45
59 32 0.19
60 42 0.25
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.38
Consensus pattern (58 bp):
AAAATGGAATTTTTGGAAATTAGAGGGTAAAATGTAATTTTTGGAAGTTTTGAGGTCA
Found at i:20797880 original size:30 final size:29
Alignment explanation
Indices: 20797635--20797867 Score: 233
Period size: 29 Copynumber: 7.9 Consensus size: 29
20797625 TGGATACCAG
*
20797635 GGGT-AAAATGGTAATTTTTGGAAGTTTTA
1 GGGTAAAAAT-GTAATTTTTGGAAGTTTGA
* * * *
20797664 GGGTTAAAATGGAATTTTTGGAAATTAGA
1 GGGTAAAAATGTAATTTTTGGAAGTTTGA
* * *
20797693 GGGTAAAAGTGTAATTTTTTGAATTTTTGA
1 GGGTAAAAATGTAATTTTTGGAA-GTTTGA
* *
20797723 -GGTCAAAATGGAATTTTTGGAAGTTTGA
1 GGGTAAAAATGTAATTTTTGGAAGTTTGA
20797751 GGGTAAAAATGTAATTTTTGGAAGTTTTGA
1 GGGTAAAAATGTAATTTTTGGAAG-TTTGA
* *
20797781 -GGTCAAAAATGGAATTTTTGGAAGTTTGGG
1 GGGT-AAAAATGTAATTTTTGGAAGTTT-GA
* *
20797811 GGGT-AAAATATAATTTTTTGGAAATTGTG-
1 GGGTAAAAATGTAA-TTTTTGGAAGTT-TGA
20797840 GGGTCAAAAATGTAATTTTTGGAAGTTT
1 GGGT-AAAAATGTAATTTTTGGAAGTTT
20797868 CATGGTTAAA
Statistics
Matches: 169, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
28 5 0.03
29 95 0.56
30 57 0.34
31 12 0.07
ACGTcount: A:0.33, C:0.01, G:0.27, T:0.39
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTTGGAAGTTTGA
Found at i:20797910 original size:60 final size:57
Alignment explanation
Indices: 20797650--20797932 Score: 211
Period size: 60 Copynumber: 4.8 Consensus size: 57
20797640 AAATGGTAAT
* * * * *
20797650 TTTTGGAAGTTTTAGGGT-TAAAATGGAATTTTTGGAAATTAGAGGGTAAAAGT-GTAA
1 TTTTGGAAG-TTTGGGGTCAAAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATAG-AA
* * *
20797707 TTTTTTGAATTTTTGAGGTC-AAAATGGAATTTTTGGAAGTTTGAGGGTAAAAAT-GTAA
1 -TTTTGGAA-GTTTGGGGTCAAAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATAG-AA
* * *
20797765 TTTTTGGAAGTTTTGAGGTCAAAAATGGAATTTTTGGAAGTTTGGGGGGTAAAATATA-ATT
1 -TTTTGGAAG-TTTGGGGTCAAAAATGGAATTTTTGGAAGTTT-GAGGGTAAAA-ATAGA-A
* * * * *
20797826 TTTTGGAAATTGTGGGGTCAAAAATGTAATTTTTGGAAGTTTCATGGTTAAAAATAGGA
1 TTTTGGAAGTT-TGGGGTCAAAAATGGAATTTTTGGAAGTTTGA-GGGTAAAAATAGAA
**
20797885 TTTTGGAGCAGTTTAGGGGTC-AAAATACAATTTTTGGATAGTTT-AGGG
1 TTTTGGA--AGTTT-GGGGTCAAAAATGGAATTTTTGGA-AGTTTGAGGG
20797933 ACTTCCAAGG
Statistics
Matches: 187, Mismatches: 23, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
58 65 0.35
59 36 0.19
60 70 0.37
61 16 0.09
ACGTcount: A:0.32, C:0.02, G:0.27, T:0.39
Consensus pattern (57 bp):
TTTTGGAAGTTTGGGGTCAAAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATAGAA
Found at i:20799776 original size:6 final size:6
Alignment explanation
Indices: 20799765--20799818 Score: 51
Period size: 6 Copynumber: 9.2 Consensus size: 6
20799755 CAAATTTACC
* *
20799765 AAATTT AAATTT AACA--G AAATTT AAATTT AAATTTT AAA-AT AAATTT
1 AAATTT AAATTT AA-ATTT AAATTT AAATTT AAA-TTT AAATTT AAATTT
20799812 AAATTT A
1 AAATTT A
20799819 TAAATAAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
4 1 0.03
5 6 0.15
6 25 0.64
7 7 0.18
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (6 bp):
AAATTT
Found at i:20799809 original size:24 final size:23
Alignment explanation
Indices: 20799765--20799818 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
20799755 CAAATTTACC
*
20799765 AAATTTAAATTTAACAGAAATTT
1 AAATTTAAATTTAAAAGAAATTT
*
20799788 AAATTTAAATTTTAAAATAAATTT
1 AAATTTAAA-TTTAAAAGAAATTT
20799812 AAATTTA
1 AAATTTA
20799819 TAAATAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 9 0.32
24 19 0.68
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
AAATTTAAATTTAAAAGAAATTT
Found at i:20799810 original size:18 final size:19
Alignment explanation
Indices: 20799787--20799835 Score: 75
Period size: 18 Copynumber: 2.6 Consensus size: 19
20799777 AACAGAAATT
20799787 TAAATTTAAATTTTA-AAA
1 TAAATTTAAATTTTATAAA
20799805 TAAATTTAAA-TTTATAAA
1 TAAATTTAAATTTTATAAA
20799823 TAAATTTAGAATT
1 TAAATTTA-AATT
20799836 AACTTAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.14
18 21 0.75
19 2 0.07
20 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TAAATTTAAATTTTATAAA
Found at i:20800566 original size:205 final size:205
Alignment explanation
Indices: 20800253--20801043 Score: 1101
Period size: 206 Copynumber: 3.9 Consensus size: 205
20800243 ATTTTCACAA
* * *
20800253 GAAGACGGATTTGGTTCACTTCTCTGTATCTCATCAGGAAGCTAACCACTTTATTGCTTCGACCT
1 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
* * * * **
20800318 GCTTCTCAGTATCTTATCAGGAAGTTGGGGTTCGAATATTTGCTCGTATTGAGCCTGGGTTTGAT
66 GCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTGAGCCTGGGTTTGAT
*
20800383 TTGGTCTTCTTCTCAGTGTCTCATCGGGAAGATGACCGCATCACTTGTTTTAATTCGCTTCTTTG
131 TTGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCATCACTTGTTTTAATTCGCTTCTTTG
*
20800448 GATCTCCTCAG
196 G-TCTCATCAG
* * *
20800459 GAAGACGAATTTGGTCCACTTTTCAGTGTCTCATCAGGAAGCTAACCA-TTTATTGCTTCGACCT
1 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
* * * *
20800523 GCTTCTTAGTGTCTCATCAGGAAGCTGGGGTTCAAAAATTTGCTCACATTGAGCTTGGGTTTGAT
66 GCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTGAGCCTGGGTTTGAT
* * *
20800588 TTGGTCTTCTTCTCAGTATCTCATTAGGAAGATGACCGCATCACTTGTTTTAATTCACTTCTCTC
131 TTGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCATCACTTGTTTTAATTCGCTTCT-T-
*
20800653 T-GTCTCATCAA
194 TGGTCTCATCAG
20800664 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
1 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
* * * * *
20800729 ACTTCTTAGTGTCTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACACTGAGCTTGGGTTTGAT
66 GCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTGAGCCTGGGTTTGAT
* * *
20800794 TTGGTCTTCTTCTCAGTGTGTCATCAGGAAGATGACCGCATCACTTGTTTCAATTCGCTTCTCTG
131 TTGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCATCACTTGTTTTAATTCGCTTCTTTG
20800859 TGTCTCATCAG
196 -GTCTCATCAG
* * * *
20800870 GAAGACGAATTTGGTCCACTTCTCTGTATTTCATTAGGAAGCTAACCATTTTATTGCTTCGATCA
1 GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
* ** *
20800935 GCTTCTCAGTGTCTCATCAGGAAGCTGGGATTCGAAGATTTGCTCGTATTGAGCC-----TTGAG
66 GCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTGAGCCTGGGTTTGAT
* * * * * *
20800995 TTGGTATACTTCTCTGTATCTTATCAGGAAGATGACCGCCTCACTTGTT
131 TTGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCATCACTTGTT
20801044 GGTGTATTAC
Statistics
Matches: 525, Mismatches: 55, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
201 46 0.09
204 1 0.00
205 182 0.35
206 295 0.56
207 1 0.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (205 bp):
GAAGACGAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
GCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTGAGCCTGGGTTTGAT
TTGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCATCACTTGTTTTAATTCGCTTCTTTG
GTCTCATCAG
Found at i:20813338 original size:29 final size:30
Alignment explanation
Indices: 20813176--20813381 Score: 174
Period size: 30 Copynumber: 6.9 Consensus size: 30
20813166 CTTCAGGGGT
* * *
20813176 AAAATGGTAATTTTTAGAAGTTTGA-GGTCA
1 AAAAT-GTAATTTTTGGAAGTTTTAGGGTTA
* * *
20813206 AAAATGGAATTTTTGGAA-ATTTAGGGGTA
1 AAAATGTAATTTTTGGAAGTTTTAGGGTTA
* * *
20813235 GAAAATGTAATTTTTGGAATTTTTAAGG-TC
1 -AAAATGTAATTTTTGGAAGTTTTAGGGTTA
* **
20813265 AAAATGGAATTTTTGGAAGTTTCGGGGTTA
1 AAAATGTAATTTTTGGAAGTTTTAGGGTTA
20813295 AAAATGTAATTTTTGGAAGTTTTAGGGTTA
1 AAAATGTAATTTTTGGAAGTTTTAGGGTTA
**
20813325 AAAATG-AGA-TTTTGGAGATGTTCGAGGGTT-
1 AAAATGTA-ATTTTTGGA-A-GTTTTAGGGTTA
*
20813355 AAAATATAATTTTTGGACAG-TTTAGGG
1 AAAATGTAATTTTTGGA-AGTTTTAGGG
20813382 ACTTCTAGGG
Statistics
Matches: 142, Mismatches: 25, Indels: 19
0.76 0.13 0.10
Matches are distributed among these distances:
28 3 0.02
29 49 0.35
30 66 0.46
31 24 0.17
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.38
Consensus pattern (30 bp):
AAAATGTAATTTTTGGAAGTTTTAGGGTTA
Found at i:20813356 original size:31 final size:30
Alignment explanation
Indices: 20813147--20813376 Score: 154
Period size: 30 Copynumber: 7.7 Consensus size: 30
20813137 CATCGGGATC
* ** *
20813147 AAAAATGAAATTTTTGGACCTTC-AGGGGT
1 AAAAATGTAATTTTTGGAAGTTCGAGGGTT
* * *
20813176 -AAAATGGTAATTTTTAGAAGTTTGA-GGTC
1 AAAAAT-GTAATTTTTGGAAGTTCGAGGGTT
* * * *
20813205 AAAAATGGAATTTTTGGAAATT-TAGGGGT
1 AAAAATGTAATTTTTGGAAGTTCGAGGGTT
* ** *
20813234 AGAAAATGTAATTTTTGGAATTTTTAAGG-T
1 A-AAAATGTAATTTTTGGAAGTTCGAGGGTT
* *
20813264 CAAAATGGAATTTTTGGAAGTTTCG-GGGTT
1 AAAAATGTAATTTTTGGAAG-TTCGAGGGTT
**
20813294 AAAAATGTAATTTTTGGAAGTTTTAGGGTT
1 AAAAATGTAATTTTTGGAAGTTCGAGGGTT
20813324 AAAAATG-AGA-TTTTGGAGATGTTCGAGGGTT
1 AAAAATGTA-ATTTTTGGA-A-GTTCGAGGGTT
*
20813355 -AAAATATAATTTTTGGACAGTT
1 AAAAATGTAATTTTTGGA-AGTT
20813377 TAGGGACTTC
Statistics
Matches: 157, Mismatches: 30, Indels: 27
0.73 0.14 0.13
Matches are distributed among these distances:
28 6 0.04
29 59 0.38
30 70 0.45
31 22 0.14
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.37
Consensus pattern (30 bp):
AAAAATGTAATTTTTGGAAGTTCGAGGGTT
Found at i:20813365 original size:60 final size:59
Alignment explanation
Indices: 20813147--20813381 Score: 211
Period size: 59 Copynumber: 4.0 Consensus size: 59
20813137 CATCGGGATC
* ** * *
20813147 AAAAATGAAATTTTTGG-ACCTTCAGGGG-T-AAAATGGTAATTTTTAGAAGTTTGA-GGT
1 AAAAATGGAATTTTTGGAAGTTTC-GGGGTTAAAAAT-GTAATTTTTGGAAGTTTTAGGGT
* * * *
20813204 CAAAAATGGAATTTTTGGAAATTTAGGGG-TAGAAAATGTAATTTTTGGAATTTTTAAGGT
1 -AAAAATGGAATTTTTGGAAGTTTCGGGGTTA-AAAATGTAATTTTTGGAAGTTTTAGGGT
*
20813264 CAAAATGGAATTTTTGGAAGTTTCGGGGTTAAAAATGTAATTTTTGGAAGTTTTAGGGTT
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTTAAAAATGTAATTTTTGGAAGTTTTAGGG-T
*
20813324 AAAAAT-GAGA-TTTTGG-AGATGTTCGAGGGTT-AAAATATAATTTTTGGACAG-TTTAGGG
1 AAAAATGGA-ATTTTTGGAAG-T-TTCG-GGGTTAAAAATGTAATTTTTGGA-AGTTTTAGGG
20813382 ACTTCTAGGG
Statistics
Matches: 152, Mismatches: 14, Indels: 20
0.82 0.08 0.11
Matches are distributed among these distances:
58 23 0.15
59 78 0.51
60 44 0.29
61 7 0.05
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (59 bp):
AAAAATGGAATTTTTGGAAGTTTCGGGGTTAAAAATGTAATTTTTGGAAGTTTTAGGGT
Found at i:20815265 original size:18 final size:19
Alignment explanation
Indices: 20815242--20815290 Score: 75
Period size: 18 Copynumber: 2.6 Consensus size: 19
20815232 TTACCAAATT
20815242 TAAATTTAAATTTTA-AAA
1 TAAATTTAAATTTTATAAA
20815260 TAAATTTAAA-TTTATAAA
1 TAAATTTAAATTTTATAAA
20815278 TAAATTTAGAATT
1 TAAATTTA-AATT
20815291 AACTTAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.14
18 21 0.75
19 2 0.07
20 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TAAATTTAAATTTTATAAA
Found at i:20818239 original size:23 final size:23
Alignment explanation
Indices: 20818187--20818240 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
20818177 ATGAATATAA
* *
20818187 ATAATTAAATGAAGACAATCAAAT
1 ATAATT-AATGAACACAATAAAAT
20818211 ATAATTAAT-AACACAATAAATAT
1 ATAATTAATGAACACAATAAA-AT
20818234 ATAATTA
1 ATAATTA
20818241 TAGTATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 9 0.33
23 12 0.44
24 6 0.22
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (23 bp):
ATAATTAATGAACACAATAAAAT
Found at i:20818286 original size:29 final size:28
Alignment explanation
Indices: 20818223--20818289 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
20818213 AATTAATAAC
*
20818223 ACAATAAATATATAATTATAGTATTAAAT
1 ACAATAAA-ATATAATCATAGTATTAAAT
*
20818252 AAAATAACAATATAATCATAGTATT-AAT
1 ACAATAA-AATATAATCATAGTATTAAAT
20818280 GACAATAAAA
1 -ACAATAAAA
20818290 ATTAATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
28 5 0.15
29 27 0.82
30 1 0.03
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.31
Consensus pattern (28 bp):
ACAATAAAATATAATCATAGTATTAAAT
Found at i:20818621 original size:14 final size:13
Alignment explanation
Indices: 20818600--20818645 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
20818590 AATGACATGA
20818600 AAATAAATAAAAC
1 AAATAAATAAAAC
20818613 AAGATAAAT-AAAC
1 AA-ATAAATAAAAC
*
20818626 AAA-AAATAAACAA
1 AAATAAATAAA-AC
20818639 AAATAAA
1 AAATAAA
20818646 AATTAAAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
11 4 0.14
12 3 0.11
13 12 0.43
14 9 0.32
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.13
Consensus pattern (13 bp):
AAATAAATAAAAC
Found at i:20818642 original size:10 final size:11
Alignment explanation
Indices: 20818604--20818645 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 11
20818594 ACATGAAAAT
20818604 AAATAAAACAAGA
1 AAAT-AAACAA-A
20818617 TAAATAAACAAA
1 -AAATAAACAAA
20818629 AAATAAAC-AA
1 AAATAAACAAA
20818639 AAATAAA
1 AAATAAA
20818646 AATTAAAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.32
11 8 0.29
12 1 0.04
13 6 0.21
14 4 0.14
ACGTcount: A:0.79, C:0.07, G:0.02, T:0.12
Consensus pattern (11 bp):
AAATAAACAAA
Found at i:20818740 original size:15 final size:15
Alignment explanation
Indices: 20818706--20818747 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
20818696 ATTAGGCATG
*
20818706 AAAATAAAT-GACAA
1 AAAATAAATAAACAA
20818720 ATAAATAAATAAACAA
1 A-AAATAAATAAACAA
*
20818736 AAAATTAATAAA
1 AAAATAAATAAA
20818748 TTAAATACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 1 0.04
15 18 0.75
16 5 0.21
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATAAATAAACAA
Found at i:20818813 original size:10 final size:10
Alignment explanation
Indices: 20818798--20818826 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
20818788 AAAAGAAGAC
20818798 GAACTCCGAT
1 GAACTCCGAT
20818808 GAACTCCGAT
1 GAACTCCGAT
20818818 GAACTCCGA
1 GAACTCCGA
20818827 GCAAACTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.17
Consensus pattern (10 bp):
GAACTCCGAT
Found at i:20820188 original size:75 final size:75
Alignment explanation
Indices: 20820074--20820307 Score: 299
Period size: 75 Copynumber: 3.0 Consensus size: 75
20820064 TCTTACCCCG
* * * * *
20820074 ACCATGAGGCAAATTAAAGTCATCCAATATTTTATCCTAACTAGAGGGTAGATTGAAGACACCAT
1 ACCATGAGGCAAATTGAAGTCATCTAATCTTTTACCCTAACCAGAGGGTAGATTGAAGACACCAT
20820139 CCAATCTCTT
66 CCAATCTCTT
* * *
20820149 ACCATGGGGCAAATTGAAGTCATCTAATCTTTTACCCTAACCAGAAGGCAGATTGAAGACACCAT
1 ACCATGAGGCAAATTGAAGTCATCTAATCTTTTACCCTAACCAGAGGGTAGATTGAAGACACCAT
20820214 CCAATCTCTT
66 CCAATCTCTT
*
20820224 ACCCCAACCATGAGGCAGATTGAAG-CTATCTAATCTTTTACCCTAACCAGAGGGTAGATTGAAG
1 ------ACCATGAGGCAAATTGAAGTC-ATCTAATCTTTTACCCTAACCAGAGGGTAGATTGAAG
* *
20820288 CCACCATCCAATCTTTT
59 ACACCATCCAATCTCTT
20820305 ACC
1 ACC
20820308 CTAATCCAGA
Statistics
Matches: 138, Mismatches: 14, Indels: 14
0.83 0.08 0.08
Matches are distributed among these distances:
75 70 0.51
80 1 0.01
81 67 0.49
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (75 bp):
ACCATGAGGCAAATTGAAGTCATCTAATCTTTTACCCTAACCAGAGGGTAGATTGAAGACACCAT
CCAATCTCTT
Found at i:20820266 original size:81 final size:81
Alignment explanation
Indices: 20820054--20820333 Score: 351
Period size: 81 Copynumber: 3.5 Consensus size: 81
20820044 TTACATCATC
* * * * * *
20820054 CCATCCAATCTCTTACCCCGACCATGAGGCAAATTAAAGTCATCCAATATTTTATCCTAACTAGA
1 CCATCCAATCTCTTACCCCAACCATGAGGCAAATTGAAGTCATCTAATCTTTTACCCTAACCAGA
20820119 GGGTAGATTGAAGACA
66 GGGTAGATTGAAGACA
*
20820135 CCATCCAATCTCTT------ACCATGGGGCAAATTGAAGTCATCTAATCTTTTACCCTAACCAGA
1 CCATCCAATCTCTTACCCCAACCATGAGGCAAATTGAAGTCATCTAATCTTTTACCCTAACCAGA
* *
20820194 AGGCAGATTGAAGACA
66 GGGTAGATTGAAGACA
*
20820210 CCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAG-CTATCTAATCTTTTACCCTAACCAG
1 CCATCCAATCTCTTACCCCAACCATGAGGCAAATTGAAGTC-ATCTAATCTTTTACCCTAACCAG
*
20820274 AGGGTAGATTGAAGCCA
65 AGGGTAGATTGAAGACA
* * *
20820291 CCATCCAATCTTTTACCCTAATCCA-GAGGGCAGATTGAAGTCA
1 CCATCCAATCTCTTACCCCAA-CCATGA-GGCAAATTGAAGTCA
20820334 CCATCATCTA
Statistics
Matches: 174, Mismatches: 15, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
75 67 0.39
80 1 0.01
81 89 0.51
82 16 0.09
83 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (81 bp):
CCATCCAATCTCTTACCCCAACCATGAGGCAAATTGAAGTCATCTAATCTTTTACCCTAACCAGA
GGGTAGATTGAAGACA
Found at i:20820272 original size:39 final size:39
Alignment explanation
Indices: 20820054--20820330 Score: 192
Period size: 39 Copynumber: 7.0 Consensus size: 39
20820044 TTACATCATC
* ** * *
20820054 CCATCCAATCTCTTACCCCGACCATGAGGCAAATTAAAG-
1 CCATCCAATCTTTTACCCTAACCA-GAGGCAGATTGAAGA
* * * * *
20820093 TCATCCAATATTTTATCCTAACTAGAGGGTAGATTGAAGACA
1 CCATCCAATCTTTTACCCTAACCAGA-GGCAGATTGAAG--A
* * * *
20820135 CCATCCAATCTCTTA-CC--A--TGGGGCAAATTGAAG-
1 CCATCCAATCTTTTACCCTAACCAGAGGCAGATTGAAGA
* *
20820168 TCATCTAATCTTTTACCCTAACCAGAAGGCAGATTGAAGACA
1 CCATCCAATCTTTTACCCTAACCAG-AGGCAGATTGAAG--A
* *
20820210 CCATCCAATCTCTTACCCCAACCATGAGGCAGATTGAAG-
1 CCATCCAATCTTTTACCCTAACCA-GAGGCAGATTGAAGA
* * *
20820249 CTATCTAATCTTTTACCCTAACCAGAGGGTAGATTGAAGCCA
1 CCATCCAATCTTTTACCCTAACCAGA-GGCAGATTGAAG--A
20820291 CCATCCAATCTTTTACCCTAATCCAGAGGGCAGATTGAAG
1 CCATCCAATCTTTTACCCTAA-CCAGA-GGCAGATTGAAG
20820331 TCACCATCAT
Statistics
Matches: 184, Mismatches: 35, Indels: 34
0.73 0.14 0.13
Matches are distributed among these distances:
33 12 0.07
34 2 0.01
36 11 0.06
37 1 0.01
38 5 0.03
39 69 0.38
41 2 0.01
42 64 0.35
43 18 0.10
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (39 bp):
CCATCCAATCTTTTACCCTAACCAGAGGCAGATTGAAGA
Found at i:20820326 original size:43 final size:41
Alignment explanation
Indices: 20820094--20820338 Score: 224
Period size: 42 Copynumber: 6.1 Consensus size: 41
20820084 AAATTAAAGT
* * * *
20820094 CATCCAATATTTTATCCTAACTAGAGGGTAGATTGAAGACAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAC
* * * *
20820136 CATCCAATCTCTTA-CC--A--TG-GGGCAAATTGAAG--T
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGCAC
* *
20820169 CATCTAATCTTTTACCCTAACCAGAAGGCAGATTGAAGACAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAC
* *
20820211 CATCCAATCTCTTACCCCAACCATGA-GGCAGATTGAAG--C
1 CATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGCAC
* * *
20820250 TATCTAATCTTTTACCCTAACCAGAGGGTAGATTGAAGCCAC
1 CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAG-CAC
20820292 CATCCAATCTTTTACCCTAATCCAGAGGGCAGATTGAAGTCAC
1 CATCCAATCTTTTACCCTAA-CCAGAGGGCAGATTGAAG-CAC
20820335 CATC
1 CATC
20820339 ATCTAGTATT
Statistics
Matches: 164, Mismatches: 24, Indels: 29
0.76 0.11 0.13
Matches are distributed among these distances:
33 12 0.07
34 2 0.01
36 12 0.07
37 1 0.01
38 3 0.02
39 43 0.26
41 2 0.01
42 63 0.38
43 26 0.16
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (41 bp):
CATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGCAC
Found at i:20835013 original size:14 final size:14
Alignment explanation
Indices: 20834994--20835025 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
20834984 AAGTTCTTAA
*
20834994 TGATTTCATAGTCT
1 TGATTTCATAGACT
20835008 TGATTTCATAGACT
1 TGATTTCATAGACT
20835022 TGAT
1 TGAT
20835026 CAATTCAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.16, T:0.47
Consensus pattern (14 bp):
TGATTTCATAGACT
Found at i:20838797 original size:7 final size:7
Alignment explanation
Indices: 20838785--20838810 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
20838775 AATTATAGAA
20838785 TTAAATT
1 TTAAATT
20838792 TTAAATT
1 TTAAATT
20838799 TTAAATT
1 TTAAATT
20838806 TTAAA
1 TTAAA
20838811 AGAGTACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
TTAAATT
Found at i:20840071 original size:15 final size:15
Alignment explanation
Indices: 20840051--20840082 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
20840041 GGTGCTTATG
20840051 AGAAAACACCGCTAA
1 AGAAAACACCGCTAA
*
20840066 AGAAAACGCCGCTAA
1 AGAAAACACCGCTAA
20840081 AG
1 AG
20840083 GTTAAGCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.19, T:0.06
Consensus pattern (15 bp):
AGAAAACACCGCTAA
Found at i:20842155 original size:30 final size:30
Alignment explanation
Indices: 20842121--20842185 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
20842111 GCAATAGCGG
20842121 CGTTTAT-GAGAAAAACGCCGCTAAAGGCGA
1 CGTTTATAG-GAAAAACGCCGCTAAAGGCGA
20842151 CGTTTATAGGAAAAACGCCGCTAAAGGCGA
1 CGTTTATAGGAAAAACGCCGCTAAAGGCGA
20842181 CGTTT
1 CGTTT
20842186 TTCCGTAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 33 0.97
31 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (30 bp):
CGTTTATAGGAAAAACGCCGCTAAAGGCGA
Found at i:20843247 original size:21 final size:21
Alignment explanation
Indices: 20843218--20843277 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
20843208 ATTTTCTAAA
* *
20843218 CTTTACTCTTCTTCACGTACGC
1 CTTT-CTCTTCTTCACGCACAC
*
20843240 CTTTCTCTTCTTCATGCACAC
1 CTTTCTCTTCTTCACGCACAC
*
20843261 CCTTCTCTTCTTCACGC
1 CTTTCTCTTCTTCACGC
20843278 CCTTCCCTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
21 29 0.88
22 4 0.12
ACGTcount: A:0.12, C:0.40, G:0.07, T:0.42
Consensus pattern (21 bp):
CTTTCTCTTCTTCACGCACAC
Found at i:20844288 original size:24 final size:24
Alignment explanation
Indices: 20844203--20844289 Score: 102
Period size: 24 Copynumber: 3.6 Consensus size: 24
20844193 TAGATTAATA
* * *
20844203 AGAGTTTGACTCAAATAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
* *
20844227 AGAGTTTAATTAAAACAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
** *
20844251 AGAGTTTATTTGAAACAATTAAAC
1 AGAGTTTAACTGAAACAAATAAAC
20844275 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
20844290 GATTATTTCT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.28
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:20846255 original size:24 final size:24
Alignment explanation
Indices: 20846228--20846286 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
20846218 TGACTCAAAT
* *
20846228 AAATAAACATAGTTTAATTGAAAC
1 AAATAAACAGAGTTCAATTGAAAC
* *
20846252 AAATAAATAGAGTTCATTTGAAAC
1 AAATAAACAGAGTTCAATTGAAAC
*
20846276 AATTAAACAGA
1 AAATAAACAGA
20846287 ATTTGTGTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.27
Consensus pattern (24 bp):
AAATAAACAGAGTTCAATTGAAAC
Found at i:20849849 original size:30 final size:29
Alignment explanation
Indices: 20849807--20850000 Score: 82
Period size: 29 Copynumber: 6.3 Consensus size: 29
20849797 TTTATGATTT
20849807 TTTTTAT-A-ATTTTATATCAATTTTAATA
1 TTTTTATAATATTTTATAT-AATTTTAATA
* *
20849835 TTTTTATAATATTTTTTATAAGTTTTTAAGAA
1 TTTTTATAATATTTTATATAA--TTTTAA-TA
* *
20849867 TTTTTGT-ATATTTTTATAAAATTTTAAATA
1 TTTTTATAATA-TTTTATATAATTTT-AATA
*
20849897 TGTTTTATTAAT-TTTATAAAAAGTTATAATTTATTATA
1 T-TTTTA-TAATATTT-T----A--TATAATTT-TAATA
*
20849935 TTTTTAT-A-AGTTTATATCAATTTTAAT-
1 TTTTTATAATATTTTATAT-AATTTTAATA
**
20849962 TTTTTA-AATAATTTT-TATAATTTTTCTA
1 TTTTTATAAT-ATTTTATATAATTTTAATA
20849990 TTTTTTATAAT
1 -TTTTTATAAT
20850001 TTTAATGATT
Statistics
Matches: 126, Mismatches: 14, Indels: 50
0.66 0.07 0.26
Matches are distributed among these distances:
27 14 0.11
28 16 0.13
29 18 0.14
30 18 0.14
31 18 0.14
32 17 0.13
33 2 0.02
34 1 0.01
35 3 0.02
36 2 0.02
37 5 0.04
38 11 0.09
39 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (29 bp):
TTTTTATAATATTTTATATAATTTTAATA
Found at i:20849850 original size:12 final size:11
Alignment explanation
Indices: 20849830--20849904 Score: 54
Period size: 10 Copynumber: 7.1 Consensus size: 11
20849820 ATATCAATTT
20849830 TAATATTTTTA
1 TAATATTTTTA
20849841 TAATATTTTTTA
1 TAATA-TTTTTA
*
20849853 TAA-GTTTTTA
1 TAATATTTTTA
*
20849863 -AGA-ATTTTTG
1 TA-ATATTTTTA
20849873 T-ATATTTTTA
1 TAATATTTTTA
*
20849883 TAA-AATTTTA
1 TAATATTTTTA
20849893 -AATATGTTTTA
1 TAATAT-TTTTA
20849904 T
1 T
20849905 TAATTTTATA
Statistics
Matches: 50, Mismatches: 6, Indels: 15
0.70 0.08 0.21
Matches are distributed among these distances:
9 4 0.08
10 26 0.52
11 11 0.22
12 9 0.18
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TAATATTTTTA
Found at i:20849869 original size:40 final size:42
Alignment explanation
Indices: 20849795--20849891 Score: 110
Period size: 40 Copynumber: 2.4 Consensus size: 42
20849785 CAAGTTCAAG
* * *
20849795 TTTTTATGATTTTTTTTATAATTTTATATCAA-TTTT-AATA
1 TTTTTATAATATTTTTTATAATTTTATAACAATTTTTGAATA
* *
20849835 TTTTTATAATATTTTTTATAAGTTTT-TAAGAATTTTTGTATA
1 TTTTTATAATATTTTTTATAA-TTTTATAACAATTTTTGAATA
*
20849877 TTTTTATAAAATTTT
1 TTTTTATAATATTTT
20849892 AAATATGTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
40 23 0.48
41 8 0.17
42 17 0.35
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (42 bp):
TTTTTATAATATTTTTTATAATTTTATAACAATTTTTGAATA
Found at i:20849976 original size:11 final size:9
Alignment explanation
Indices: 20849807--20850030 Score: 93
Period size: 9 Copynumber: 23.6 Consensus size: 9
20849797 TTTATGATTT
20849807 TTTTTATAA
1 TTTTTATAA
20849816 TTTTATATCAA
1 TTTT-TAT-AA
*
20849827 TTTTAAT-A
1 TTTTTATAA
20849835 TTTTTATAATA
1 TTTTTAT-A-A
20849846 TTTTTTATAA
1 -TTTTTATAA
*
20849856 GTTTTTAAGAA
1 -TTTTT-ATAA
*
20849867 TTTTTGTATA
1 TTTTTATA-A
20849877 TTTTTATAAA
1 TTTTTAT-AA
* *
20849887 ATTTTAAATA
1 TTTTTATA-A
20849897 TGTTTTATTAA
1 T-TTTTA-TAA
20849908 -TTTTATAAA
1 TTTTTAT-AA
***
20849917 AAGTTATAA
1 TTTTTATAA
20849926 TTTATTAT-A
1 TTT-TTATAA
20849935 TTTTTATAA
1 TTTTTATAA
*
20849944 GTTTATATCAA
1 -TTTTTAT-AA
*
20849955 -TTTTA-AT
1 TTTTTATAA
20849962 TTTTTAAATAA
1 TTTTT--ATAA
20849973 TTTTTATAA
1 TTTTTATAA
* *
20849982 TTTTTCTAT
1 TTTTTATAA
20849991 TTTTTATAA
1 TTTTTATAA
* *
20850000 TTTTAATGA
1 TTTTTATAA
*
20850009 TTTTT-TTA
1 TTTTTATAA
20850017 TGTTTT-TAA
1 T-TTTTATAA
20850026 TTTTT
1 TTTTT
20850031 TTCAAGTGAA
Statistics
Matches: 163, Mismatches: 29, Indels: 47
0.68 0.12 0.20
Matches are distributed among these distances:
7 1 0.01
8 23 0.14
9 60 0.37
10 45 0.28
11 26 0.16
12 8 0.05
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:20854357 original size:80 final size:79
Alignment explanation
Indices: 20854224--20854437 Score: 284
Period size: 80 Copynumber: 2.7 Consensus size: 79
20854214 TAAACTGACG
* * *
20854224 ATCCTGGCACCCAGTGCCTAGCGGATAAACTGCGAAAGTGAGCCCAACTCTAGTTGGATTATCCA
1 ATCCTGGCACCCAGTGCCTAGCGGATAAAC-GCAAAAGTGAGCCCAGCTCTAGTTGGATTAACCA
20854289 ACAAAGATCCGTCAA
65 ACAAAGATCCGTCAA
* * *
20854304 ATCCTGGCACCTAGTGCCTAGCGGTTAAATCGCAAAAGTGAGCCTAGCTCTAGTTGGATTAACCA
1 ATCCTGGCACCCAGTGCCTAGCGGATAAA-CGCAAAAGTGAGCCCAGCTCTAGTTGGATTAACCA
* *
20854369 ACAAATATTCGTCAA
65 ACAAAGATCCGTCAA
* * * **
20854384 ATCCCGGCACCCAATGCCTGGCTAATAAACCGCAAAAGTGAGCCCAGCTCTAGT
1 ATCCTGGCACCCAGTGCCTAGCGGATAAA-CGCAAAAGTGAGCCCAGCTCTAGT
20854438 CAGTTAAACT
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
80 115 0.99
81 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (79 bp):
ATCCTGGCACCCAGTGCCTAGCGGATAAACGCAAAAGTGAGCCCAGCTCTAGTTGGATTAACCAA
CAAAGATCCGTCAA
Found at i:20855479 original size:4 final size:4
Alignment explanation
Indices: 20855470--20855497 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
20855460 TTCTAATATT
20855470 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
20855498 CCATAGTACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:20862217 original size:80 final size:80
Alignment explanation
Indices: 20862091--20862297 Score: 297
Period size: 80 Copynumber: 2.6 Consensus size: 80
20862081 ACTATCCTAA
* * * *
20862091 CACCCAGTGCCTAGCGGATAAACAGCGAAAGTGAGCCTAGTTCTAGTTGGATTATCCTACAAATA
1 CACCCAGTGCCTAGCGGATAAACAGCAAAAGTGAGCCTAGCTCTAGTTGGATTAACCAACAAATA
*
20862156 TCCGTCAAATCCTGG
66 TCAGTCAAATCCTGG
* * * * * *
20862171 CACCCAGTGCTTAGTGGTTAAACTGTAAAAGTGGGCCTAGCTCTAGTTGGATTAACCAACAAATA
1 CACCCAGTGCCTAGCGGATAAACAGCAAAAGTGAGCCTAGCTCTAGTTGGATTAACCAACAAATA
20862236 TCAGTCAAATCCTGG
66 TCAGTCAAATCCTGG
* *
20862251 CACCCAGTGCCTAGCGGATAAACCGCAAAAGTGAGCCTAACTCTAGT
1 CACCCAGTGCCTAGCGGATAAACAGCAAAAGTGAGCCTAGCTCTAGT
20862298 CAGTTAAATT
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 109 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (80 bp):
CACCCAGTGCCTAGCGGATAAACAGCAAAAGTGAGCCTAGCTCTAGTTGGATTAACCAACAAATA
TCAGTCAAATCCTGG
Found at i:20869134 original size:19 final size:19
Alignment explanation
Indices: 20869112--20869156 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
20869102 AATTGGCTCA
20869112 TAAGAGCAATATTGACTCG
1 TAAGAGCAATATTGACTCG
*
20869131 TAAGAGCAATATTGGCTCG
1 TAAGAGCAATATTGACTCG
*
20869150 CAAGAGC
1 TAAGAGC
20869157 GTTTTATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (19 bp):
TAAGAGCAATATTGACTCG
Found at i:20869234 original size:36 final size:35
Alignment explanation
Indices: 20869189--20869306 Score: 146
Period size: 36 Copynumber: 3.3 Consensus size: 35
20869179 GAGCCAGAAT
**
20869189 ATTATTGGGAATCTTGAAGAATTCGTATGAGTTAA
1 ATTATTGGGAATCTTGAAGAGCTCGTATGAGTTAA
*
20869224 ATTTATTGGGAATCTTGAAGAGCTCGTATGAGTTGGA
1 A-TTATTGGGAATCTTGAAGAGCTCGTATGAGTT-AA
* * * * *
20869261 ATTACTAGGAAACTTGAAGGGCTCGTATGAGCTAA
1 ATTATTGGGAATCTTGAAGAGCTCGTATGAGTTAA
20869296 ATTATTGGGAA
1 ATTATTGGGAA
20869307 ACTTAAAAAG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
35 11 0.16
36 57 0.81
37 2 0.03
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.33
Consensus pattern (35 bp):
ATTATTGGGAATCTTGAAGAGCTCGTATGAGTTAA
Found at i:20876462 original size:37 final size:40
Alignment explanation
Indices: 20876417--20876515 Score: 105
Period size: 38 Copynumber: 2.5 Consensus size: 40
20876407 AGCAATAAAG
* *
20876417 TGACACCCAGTGTCTCATCG-GCCTAGCCGAAGTAAAGT-
1 TGACACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAATA
* ** * *
20876455 TG-TACCCAGTACCTCATCGAATCTATCCGAAGTAAAATAA
1 TGACACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAAT-A
20876495 TGACACCCAGTGTCTCATCGA
1 TGACACCCAGTGTCTCATCGA
20876516 CTCAAGGTCG
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
37 14 0.30
38 16 0.34
40 2 0.04
41 15 0.32
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (40 bp):
TGACACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAATA
Found at i:20876643 original size:6 final size:6
Alignment explanation
Indices: 20876618--20876656 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
20876608 ACAATTCATA
* * *
20876618 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
20876657 ATTTTGATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (6 bp):
TCACTT
Found at i:20882294 original size:32 final size:31
Alignment explanation
Indices: 20882249--20882321 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
20882239 CAACTCCATT
* * *
20882249 CTTTTCTTT-ATTTAAATATTTGAACTTGACA
1 CTTTTTTTTAATTT-AATACTTAAACTTGACA
*
20882280 CTTTTTTTTAATTTAGTACTTAAACTTGACA
1 CTTTTTTTTAATTTAATACTTAAACTTGACA
20882311 -TTTTTTCTTAA
1 CTTTTTT-TTAA
20882322 ATTGATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
30 6 0.17
31 26 0.72
32 4 0.11
ACGTcount: A:0.27, C:0.12, G:0.05, T:0.55
Consensus pattern (31 bp):
CTTTTTTTTAATTTAATACTTAAACTTGACA
Found at i:20882553 original size:20 final size:21
Alignment explanation
Indices: 20882513--20882572 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 21
20882503 TTATATGTTA
20882513 AATTAATT--TTATTTTTAATT
1 AATTAATTAATTA-TTTTAATT
20882533 AATTAATTAATTATTTT-ATT
1 AATTAATTAATTATTTTAATT
20882553 AATTGAAATTAAATTATTTT
1 AATT--AATT-AATTATTTT
20882573 TTTCTTATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
20 15 0.43
21 4 0.11
22 7 0.20
23 9 0.26
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
AATTAATTAATTATTTTAATT
Found at i:20882573 original size:24 final size:24
Alignment explanation
Indices: 20882510--20882573 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
20882500 GTTTTATATG
*
20882510 TTAAATTAATTTTATTTTTAATTAA
1 TTAAATTAA-ATTATTTTTAATTAA
20882535 TT-AATT-AATTA-TTTT-ATTAA
1 TTAAATTAAATTATTTTTAATTAA
20882555 TTGAAATTAAATTATTTTT
1 TT-AAATTAAATTATTTTT
20882574 TTCTTATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
20 7 0.21
21 4 0.12
22 7 0.21
23 6 0.18
24 8 0.24
25 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (24 bp):
TTAAATTAAATTATTTTTAATTAA
Found at i:20903235 original size:103 final size:104
Alignment explanation
Indices: 20903043--20903272 Score: 302
Period size: 103 Copynumber: 2.2 Consensus size: 104
20903033 TTTCATTTAG
* * **
20903043 TACTCATGATGACACATAGTCATCAGACCTCACAATCCATAAAGGATTCACATATTCATGATGAC
1 TACTCACGATGACACATAGTCATCAGACCTCACAATCCATAAAGGATTCACATACTCACAATGAC
* * * *
20903108 ACATAGTCATCGAAGCTCATAATCCGTAAAGGATTCATC
66 ACATAGTCATCGAACCTCAAAATCCGCAAAGGATTCATA
* * * * *
20903147 TACTCGCGATGTCACATAGTCATC-GAACCTCATAATCCA-AAAGGATTCATATACTCGCAATGA
1 TACTCACGATGACACATAGTCATCAG-ACCTCACAATCCATAAAGGATTCACATACTCACAATGA
*
20903210 CACATAGTCATCGGACCTCAAAATCCGCAAAGGATTCATA
65 CACATAGTCATCGAACCTCAAAATCCGCAAAGGATTCATA
*
20903250 TACTTACGATGACACATAGTCAT
1 TACTCACGATGACACATAGTCAT
20903273 TGGACCCTTT
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
103 75 0.69
104 33 0.31
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (104 bp):
TACTCACGATGACACATAGTCATCAGACCTCACAATCCATAAAGGATTCACATACTCACAATGAC
ACATAGTCATCGAACCTCAAAATCCGCAAAGGATTCATA
Found at i:20903278 original size:52 final size:52
Alignment explanation
Indices: 20903043--20903278 Score: 285
Period size: 52 Copynumber: 4.6 Consensus size: 52
20903033 TTTCATTTAG
* * * * *
20903043 TACTCATGATGACACATAGTCATCAGACCTCACAATCCATAAAGGATTCACA
1 TACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATA
* * * * *
20903095 TATTCATGATGACACATAGTCATCGAAGCTCATAATCCGTAAAGGATTCATC
1 TACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATA
* * * *
20903147 TACTCGCGATGTCACATAGTCATCGAACCTCATAATCC-AAAAGGATTCATA
1 TACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATA
* * * *
20903198 TACTCGCAATGACACATAGTCATCGGACCTCAAAATCCGCAAAGGATTCATA
1 TACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATA
* *
20903250 TACTTACGATGACACATAGTCATTGGACC
1 TACTCACGATGACACATAGTCATCGGACC
20903279 CTTTTATATT
Statistics
Matches: 159, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
51 45 0.28
52 114 0.72
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (52 bp):
TACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATA
Found at i:20913093 original size:49 final size:48
Alignment explanation
Indices: 20913031--20913377 Score: 161
Period size: 49 Copynumber: 7.1 Consensus size: 48
20913021 TTTAATATGT
* *
20913031 TCCCTCTTCGATTTTAGGATGTTAAATCCGTCATTACGGCTTCAATCTA
1 TCCCTTTTTGATTTTAGG-TGTTAAATCCGTCATTACGGCTTCAATCTA
* * * * * * *
20913080 TCTCTTTTTGATTTTAGGGTGTTAAGTCTGCCTTGTA--GCTTTAACCTA
1 TCCCTTTTTGATTTTA-GGTGTTAAATCCGTCAT-TACGGCTTCAATCTA
* * ** * *
20913128 TCCCTATTTAATTTTAAGGTG-TAAGATCCACCGTTGCGGCTTCAATCT-
1 TCCCTTTTTGATTTT-AGGTGTTAA-ATCCGTCATTACGGCTTCAATCTA
** * * **
20913176 TTTCTTCTTCGACTTTT-GAGTGTTAGATCCGTCATTGTGGCTTCAATCTA
1 TCCCTT-TTTGA-TTTTAG-GTGTTAAATCCGTCATTACGGCTTCAATCTA
** * ** *** **
20913226 TCCCTCATCGATTTTAGGGTGTTAGGTCTACCATTGTGGCTTCAA-CATA
1 TCCCTTTTTGATTTTA-GGTGTTAAATCCGTCATTACGGCTTCAATC-TA
* * *
20913275 TCCCTTTTT-AGTTTTAAGCTG-TAAGATCCGTCGTTACGGCTTCAATCTT
1 TCCCTTTTTGA-TTTT-AGGTGTTAA-ATCCGTCATTACGGCTTCAATCTA
* ** * *
20913324 TCCCTTTTTGGTTTTAAGGTGTTAGGTCCGTCGTTACGGCTTCAACCTA
1 TCCCTTTTTGATTTT-AGGTGTTAAATCCGTCATTACGGCTTCAATCTA
20913373 TCCCT
1 TCCCT
20913378 CTTTAGTTAT
Statistics
Matches: 222, Mismatches: 56, Indels: 40
0.70 0.18 0.13
Matches are distributed among these distances:
47 4 0.02
48 42 0.19
49 158 0.71
50 18 0.08
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.41
Consensus pattern (48 bp):
TCCCTTTTTGATTTTAGGTGTTAAATCCGTCATTACGGCTTCAATCTA
Found at i:20913346 original size:147 final size:146
Alignment explanation
Indices: 20913030--20913378 Score: 400
Period size: 147 Copynumber: 2.4 Consensus size: 146
20913020 TTTTAATATG
* * * ** *
20913030 TTCCCTCTTCGA-TTTTAGGATGTTAAATCCGTCATTACGGCTTCAATCTATCTCTTTTTGATTT
1 TTCCTTCTTCGACTTTTAGG-TGTTAGATCCGTCATTACGGCTTCAATCTATCCCTCATCGATTT
* * * *
20913094 TAGGGTGTTAAGTCTGCCTTGTAGCTTTAACCTATCCCTATTTAATTTTAAGGTGTAAGATCCAC
65 TAGGGTGTTAAGTCTACCTTGTAGCTTCAACATATCCCTATTTAATTTTAAGCTGTAAGATCCAC
*
20913159 CGTTGCGGCTTCAATCT
130 CGTTACGGCTTCAATCT
* **
20913176 TTTCTTCTTCGACTTTT-GAGTGTTAGATCCGTCATTGTGGCTTCAATCTATCCCTCATCGATTT
1 TTCCTTCTTCGACTTTTAG-GTGTTAGATCCGTCATTACGGCTTCAATCTATCCCTCATCGATTT
* * * * *
20913240 TAGGGTGTTAGGTCTACCATTGTGGCTTCAACATATCCCTTTTTAGTTTTAAGCTGTAAGATCCG
65 TAGGGTGTTAAGTCTACC-TTGTAGCTTCAACATATCCCTATTTAATTTTAAGCTGTAAGATCCA
*
20913305 TCGTTACGGCTTCAATCT
129 CCGTTACGGCTTCAATCT
* * * * *
20913323 TTCCCTT-TTTG-GTTTTAAGGTGTTAGGTCCGTCGTTACGGCTTCAACCTATCCCTC
1 TT-CCTTCTTCGACTTTT-AGGTGTTAGATCCGTCATTACGGCTTCAATCTATCCCTC
20913379 TTTAGTTATA
Statistics
Matches: 169, Mismatches: 28, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
146 68 0.40
147 97 0.57
148 4 0.02
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (146 bp):
TTCCTTCTTCGACTTTTAGGTGTTAGATCCGTCATTACGGCTTCAATCTATCCCTCATCGATTTT
AGGGTGTTAAGTCTACCTTGTAGCTTCAACATATCCCTATTTAATTTTAAGCTGTAAGATCCACC
GTTACGGCTTCAATCT
Found at i:20913391 original size:49 final size:49
Alignment explanation
Indices: 20913263--20913472 Score: 197
Period size: 49 Copynumber: 4.3 Consensus size: 49
20913253 CTACCATTGT
* * *
20913263 GGCTTCAACATATCCCTTTTTAGTTTTAAGCTGTAAGATCCGTCGTTAC
1 GGCTTCAACCTATCCCTCTTTAGTTTTAAGGTGTAAGATCCGTCGTTAC
* * * * * *
20913312 GGCTTCAATCTTTCCCTTTTTGGTTTTAAGGTGTTAGGTCCGTCGTTAC
1 GGCTTCAACCTATCCCTCTTTAGTTTTAAGGTGTAAGATCCGTCGTTAC
* *
20913361 GGCTTCAACCTATCCCTCTTTAGTTATAAGGTGTAAGATCCATCGTTAC
1 GGCTTCAACCTATCCCTCTTTAGTTTTAAGGTGTAAGATCCGTCGTTAC
* * * * * * * * * * *
20913410 AGCTTTAATCTTTTCCTC-TTCGATTTTAGGGTGTTAGGTTCGTCGTTGC
1 GGCTTCAACCTATCCCTCTTTAG-TTTTAAGGTGTAAGATCCGTCGTTAC
*
20913459 GACTTCAACCTATC
1 GGCTTCAACCTATC
20913473 TTACTTCAAC
Statistics
Matches: 126, Mismatches: 34, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
48 3 0.02
49 123 0.98
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.40
Consensus pattern (49 bp):
GGCTTCAACCTATCCCTCTTTAGTTTTAAGGTGTAAGATCCGTCGTTAC
Found at i:20913454 original size:98 final size:98
Alignment explanation
Indices: 20913215--20913472 Score: 313
Period size: 98 Copynumber: 2.6 Consensus size: 98
20913205 CGTCATTGTG
* * * * *
20913215 GCTTCAATCTATCCCTCATCGATTTTAGGGTGTTAGG-TC-TACCATTGTGGCTTCAACATATCC
1 GCTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGGTTCGT--CGTTGCGGCTTCAACCTATCC
* * * *
20913278 CTTTTTAGTTTTAAGCTGTAAGATCCGTCGTTACG
64 CTCTTTAGTTATAAGCTGTAAGATCCATCGTTACA
* * * * * *
20913313 GCTTCAATCTTTCCCTTTTTGGTTTTAAGGTGTTAGGTCCGTCGTTACGGCTTCAACCTATCCCT
1 GCTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGGTTCGTCGTTGCGGCTTCAACCTATCCCT
*
20913378 CTTTAGTTATAAGGTGTAAGATCCATCGTTACA
66 CTTTAGTTATAAGCTGTAAGATCCATCGTTACA
* * *
20913411 GCTTTAATCTTTTCCTCTTCGATTTTAGGGTGTTAGGTTCGTCGTTGCGACTTCAACCTATC
1 GCTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGGTTCGTCGTTGCGGCTTCAACCTATC
20913473 TTACTTCAAC
Statistics
Matches: 133, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
98 131 0.98
99 1 0.01
100 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.40
Consensus pattern (98 bp):
GCTTCAATCTTTCCCTCTTCGATTTTAGGGTGTTAGGTTCGTCGTTGCGGCTTCAACCTATCCCT
CTTTAGTTATAAGCTGTAAGATCCATCGTTACA
Found at i:20917847 original size:40 final size:39
Alignment explanation
Indices: 20917803--20917930 Score: 159
Period size: 40 Copynumber: 3.2 Consensus size: 39
20917793 CCATAACCTG
*
20917803 GCTTGAATTTCAACACCGGCTCATAGCCTGCTAATCCGTA
1 GCTTGAATTT-AACACCGGCTCAAAGCCTGCTAATCCGTA
* * *
20917843 GCTTGAAATTAGACACTGGCTCAAAGCCTACTAAGT-CGTA
1 GCTTGAATTTA-ACACCGGCTCAAAGCCTGCTAA-TCCGTA
* *
20917883 GCTTGAAATTTGACACCGGCTCAAAGCCTGCTAAACCGTA
1 GCTTG-AATTTAACACCGGCTCAAAGCCTGCTAATCCGTA
20917923 GCTTGAAT
1 GCTTGAAT
20917931 CAATCCAAAC
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
39 4 0.05
40 66 0.88
41 5 0.07
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (39 bp):
GCTTGAATTTAACACCGGCTCAAAGCCTGCTAATCCGTA
Found at i:20919359 original size:23 final size:21
Alignment explanation
Indices: 20919324--20919368 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 21
20919314 CAACATAATT
20919324 TCTCGATTAGTGAA-TATCTTA
1 TCTCGATTAGTGAACT-TCTTA
20919345 TCTCGCATTCAGTGAACTTCTTA
1 TCTCG-ATT-AGTGAACTTCTTA
20919368 T
1 T
20919369 TGAGATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.24
22 3 0.14
23 12 0.57
24 1 0.05
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.42
Consensus pattern (21 bp):
TCTCGATTAGTGAACTTCTTA
Found at i:20922886 original size:13 final size:13
Alignment explanation
Indices: 20922868--20922895 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
20922858 GTCGAATCTC
20922868 ATGACTCATACTA
1 ATGACTCATACTA
20922881 ATGACTCATACTA
1 ATGACTCATACTA
20922894 AT
1 AT
20922896 ACGGGGTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.32
Consensus pattern (13 bp):
ATGACTCATACTA
Found at i:20927082 original size:27 final size:26
Alignment explanation
Indices: 20927032--20927084 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
20927022 AAATTAAATA
* *
20927032 CAACATACATAAAACAAAATGCAAAG
1 CAACATACATAAAAAAAAAAGCAAAG
*
20927058 CAACATATATAAAAAAAAAAAGCAAAG
1 CAACATACAT-AAAAAAAAAAGCAAAG
20927085 GATCACAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.66, C:0.15, G:0.08, T:0.11
Consensus pattern (26 bp):
CAACATACATAAAAAAAAAAGCAAAG
Found at i:20933805 original size:52 final size:52
Alignment explanation
Indices: 20933743--20934032 Score: 447
Period size: 52 Copynumber: 5.6 Consensus size: 52
20933733 TTCTTATTTA
* *
20933743 ATACTCACGATGACACATAATCATCGGACCTCATAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * *
20933795 ATACTCACGATGACACATAGTTATCGGACCTTATAATCCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * *
20933847 ATACTCACGATGACACATAGTCATTGGACCTCATAATCTGTAAAAGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
**
20933899 ATACTCACGATGACACATAGTCATCAAACCTCATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
*
20933951 ATACTCACGAT-ACAACATAGTCATCGGACCTTATAATCCGTAAAGGATTCAT
1 ATACTCACGATGAC-ACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
20934003 ATACTCACGATGACACATAGTTATCAGACC
1 ATACTCACGATGACACATAGTCATCGGACC
20934033 ATTTGCATTT
Statistics
Matches: 215, Mismatches: 21, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
51 2 0.01
52 211 0.98
53 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:20938238 original size:22 final size:22
Alignment explanation
Indices: 20938215--20938255 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
20938205 TTTTCAACCT
20938215 TTTA-AAAAATTAAAAAATTCC
1 TTTATAAAAATTAAAAAATTCC
* *
20938236 TTTATTAAAATTACAAAATT
1 TTTATAAAAATTAAAAAATT
20938256 AGACTCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (22 bp):
TTTATAAAAATTAAAAAATTCC
Found at i:20942135 original size:29 final size:29
Alignment explanation
Indices: 20942078--20942141 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
20942068 AATAGCAGAA
* * *
20942078 CAATCACTAAGCTTTGAAAAATTATAACT
1 CAATCACTAAACTTTGAAAAATAAAAACT
20942107 CAATCACTAAACTTT-AAAAATAACAAACT
1 CAATCACTAAACTTTGAAAAATAA-AAACT
20942136 -AATCAC
1 CAATCAC
20942142 CGGTAAACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 13 0.42
29 18 0.58
ACGTcount: A:0.50, C:0.20, G:0.03, T:0.27
Consensus pattern (29 bp):
CAATCACTAAACTTTGAAAAATAAAAACT
Found at i:20942139 original size:28 final size:28
Alignment explanation
Indices: 20942048--20942141 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 28
20942038 GCTTATTGGC
* *
20942048 AATCACTCAACTTTTATTAAAATAGCAGAAC-
1 AATCACTAAAC-TTTA--AAAATAACA-AACT
* * *
20942079 AATCACTAAGCTTTGAAAAATTA-TAACT
1 AATCACTAAACTTT-AAAAATAACAAACT
20942107 CAATCACTAAACTTTAAAAATAACAAACT
1 -AATCACTAAACTTTAAAAATAACAAACT
20942136 AATCAC
1 AATCAC
20942142 CGGTAAACAT
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
27 3 0.06
28 13 0.25
29 22 0.43
30 3 0.06
31 10 0.20
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.28
Consensus pattern (28 bp):
AATCACTAAACTTTAAAAATAACAAACT
Found at i:20943233 original size:30 final size:30
Alignment explanation
Indices: 20943197--20943273 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
20943187 ATGATAGTGG
*
20943197 GTGACTGATTTGTTATTTTTTTAAAGTTTA
1 GTGACTGATTTGTTATTTTTTCAAAGTTTA
* **
20943227 GTGACTGAGTTG-TAACTTTTCAAAGTTTA
1 GTGACTGATTTGTTATTTTTTCAAAGTTTA
*
20943256 GTGACTGTTTTGTTATTT
1 GTGACTGATTTGTTATTT
20943274 CCGTATTCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 24 0.63
30 14 0.37
ACGTcount: A:0.22, C:0.06, G:0.19, T:0.52
Consensus pattern (30 bp):
GTGACTGATTTGTTATTTTTTCAAAGTTTA
Found at i:20944044 original size:14 final size:15
Alignment explanation
Indices: 20944027--20944055 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20944017 TTTTTTGGCC
20944027 ATAAAT-TTTTATAA
1 ATAAATATTTTATAA
20944041 ATAAATATTTTATAA
1 ATAAATATTTTATAA
20944056 CAATTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAAATATTTTATAA
Found at i:20948080 original size:10 final size:10
Alignment explanation
Indices: 20948067--20948119 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 10
20948057 TTTAAAAAAA
20948067 TAAAAATTAT
1 TAAAAATTAT
*
20948077 T-AAATTTATT
1 TAAAAATTA-T
20948087 TAAAAATTAT
1 TAAAAATTAT
20948097 TAAAAATATAT
1 TAAAAAT-TAT
*
20948108 AAAAAAATTAT
1 -TAAAAATTAT
20948119 T
1 T
20948120 TTTTAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 6 0.17
10 11 0.31
11 12 0.34
12 6 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:20948110 original size:20 final size:20
Alignment explanation
Indices: 20948058--20948112 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
20948048 TTTTTTAAAT
20948058 TTAAAAA-A-ATAAAAATTA
1 TTAAAAATATATAAAAATTA
** *
20948076 TTAAATTTATTTAAAAATTA
1 TTAAAAATATATAAAAATTA
20948096 TTAAAAATATATAAAAA
1 TTAAAAATATATAAAAA
20948113 AATTATTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
18 5 0.17
19 1 0.03
20 23 0.79
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TTAAAAATATATAAAAATTA
Found at i:20949481 original size:12 final size:12
Alignment explanation
Indices: 20949464--20949488 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20949454 TTTTTATTGA
20949464 TGAAACTTATTC
1 TGAAACTTATTC
20949476 TGAAACTTATTC
1 TGAAACTTATTC
20949488 T
1 T
20949489 TCATTGTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (12 bp):
TGAAACTTATTC
Found at i:20950392 original size:19 final size:18
Alignment explanation
Indices: 20950368--20950416 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
20950358 TTATATGTAT
20950368 TAAAAATATTAAAAATTTA
1 TAAAAATA-TAAAAATTTA
20950387 TAAAAATA-AAAATATTT-
1 TAAAAATATAAAA-ATTTA
20950404 TAAAAA-ATAAAAA
1 TAAAAATATAAAAA
20950417 AATTATTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 2 0.07
17 14 0.50
18 4 0.14
19 8 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAAATATAAAAATTTA
Found at i:20950403 original size:18 final size:16
Alignment explanation
Indices: 20950367--20950417 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 16
20950357 TTTATATGTA
20950367 TTAAAAATATTAAAAATT
1 TTAAAAATA--AAAAATT
20950385 TATAAAAATAAAAATATT
1 T-TAAAAATAAAAA-ATT
20950403 TTAAAAAATAAAAAA
1 TT-AAAAATAAAAAA
20950418 ATTATTCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 6 0.20
18 16 0.53
19 8 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TTAAAAATAAAAAATT
Found at i:20952108 original size:19 final size:19
Alignment explanation
Indices: 20952084--20952148 Score: 96
Period size: 19 Copynumber: 3.4 Consensus size: 19
20952074 GTTGGTCAAA
20952084 AAAGTCAACGAGTCTGGTC
1 AAAGTCAACGAGTCTGGTC
*
20952103 AAAGTCAACGA-TCAAGGTC
1 AAAGTCAACGAGTC-TGGTC
*
20952122 AAAGTCAACGAGTCTTGTC
1 AAAGTCAACGAGTCTGGTC
20952141 AAAGTCAA
1 AAAGTCAA
20952149 TAACTTTAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
18 2 0.05
19 37 0.90
20 2 0.05
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (19 bp):
AAAGTCAACGAGTCTGGTC
Found at i:20954220 original size:3 final size:3
Alignment explanation
Indices: 20954212--20954255 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
20954202 AACACATAAG
20954212 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
20954256 TTCTCAGTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:20956469 original size:19 final size:19
Alignment explanation
Indices: 20956415--20956463 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
20956405 ATGAGTTTGT
*
20956415 TCAAAGTCAACGGTCAATG
1 TCAAAGTCAACGGTCTATG
20956434 TCAAAGTCAACGGGTCTA-G
1 TCAAAGTCAAC-GGTCTATG
20956453 TCAAAGTCAAC
1 TCAAAGTCAAC
20956464 AAGTCTGGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 23 0.82
20 5 0.18
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (19 bp):
TCAAAGTCAACGGTCTATG
Found at i:20958905 original size:21 final size:21
Alignment explanation
Indices: 20958879--20958918 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
20958869 TGATGCAGAC
20958879 TTCTACCGACACAAGTGACAG
1 TTCTACCGACACAAGTGACAG
* *
20958900 TTCTACCGATATAAGTGAC
1 TTCTACCGACACAAGTGAC
20958919 TCTGCTATCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (21 bp):
TTCTACCGACACAAGTGACAG
Found at i:20961171 original size:15 final size:15
Alignment explanation
Indices: 20961151--20961185 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
20961141 GAGCGGCGGT
20961151 GCTAACAAGCATGTG
1 GCTAACAAGCATGTG
20961166 GCTAACAAGCATGTG
1 GCTAACAAGCATGTG
20961181 GCTAA
1 GCTAA
20961186 AGAAGGAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (15 bp):
GCTAACAAGCATGTG
Found at i:20971161 original size:12 final size:13
Alignment explanation
Indices: 20971132--20971166 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
20971122 AGATGGCCAG
*
20971132 AAGAGGAAGAATA
1 AAGAAGAAGAATA
20971145 AAGAAGAAGAA-A
1 AAGAAGAAGAATA
20971157 AAGAAGAAGA
1 AAGAAGAAGA
20971167 GAATGGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.03
Consensus pattern (13 bp):
AAGAAGAAGAATA
Found at i:20978287 original size:31 final size:30
Alignment explanation
Indices: 20978251--20978355 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 30
20978241 ATTTGAGAAA
*
20978251 CCTTATTTGAGCACTTTTGAAAATGTTTGAC
1 CCTTATTTGAGCA-TTTTGAAAAGGTTTGAC
* * *
20978282 CCTTATTTGAGCATTGTCGAAAAGGTTAGGC
1 CCTTATTTGAGCATT-TTGAAAAGGTTTGAC
* * *
20978313 CCTTATTCGATCATTTTG-TAAGGTTT-AC
1 CCTTATTTGAGCATTTTGAAAAGGTTTGAC
20978341 CCTTCATTTTGAGCA
1 CCTT-A-TTTGAGCA
20978356 CTTCTTATGT
Statistics
Matches: 59, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
28 5 0.08
29 7 0.12
30 10 0.17
31 37 0.63
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (30 bp):
CCTTATTTGAGCATTTTGAAAAGGTTTGAC
Found at i:20978659 original size:8 final size:9
Alignment explanation
Indices: 20978642--20978671 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
20978632 TCACGTCAGT
20978642 AAATTTTAA
1 AAATTTTAA
*
20978651 AAATTTAAA
1 AAATTTTAA
20978660 AAATTTTAA
1 AAATTTTAA
20978669 AAA
1 AAA
20978672 ACAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAATTTTAA
Found at i:20978678 original size:18 final size:18
Alignment explanation
Indices: 20978642--20978681 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
20978632 TCACGTCAGT
***
20978642 AAATTTTAAAAATTTAAA
1 AAATTTTAAAAAACAAAA
20978660 AAATTTTAAAAAACAAAA
1 AAATTTTAAAAAACAAAA
20978678 AAAT
1 AAAT
20978682 AAAAGGAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATTTTAAAAAACAAAA
Done.