Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 73 of 182
Found at i:23109984 original size:23 final size:20
Alignment explanation
Indices: 23109968--23110016 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 20
23109958 TTAGATTTAT
23109968 TTTAAATTTAAAATTAGATA
1 TTTAAATTTAAAATTAGATA
*
23109988 TTTAAATTT-AATTTA-A-A
1 TTTAAATTTAAAATTAGATA
23110005 TTTAAATTTAAA
1 TTTAAATTTAAA
23110017 TAAAGATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 10 0.37
18 3 0.11
19 5 0.19
20 9 0.33
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TTTAAATTTAAAATTAGATA
Found at i:23110912 original size:55 final size:55
Alignment explanation
Indices: 23110808--23110915 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
23110798 TATTTTTATC
* *
23110808 ATTAATAGTATTAATAATAATAATAAATAAATATTTAATAAAAATAAAAAGAGAT
1 ATTAATAGCATTAATAATAATAATAAATAAATATTTAATAAAAAAAAAAAGAGAT
* * * *
23110863 ATTAATAGCATTAAATATTAAT-ATTAATTAATATTT-TTAAATAAAAAAAAGAG
1 ATTAATAGCATT-AATAATAATAATAAATAAATATTTAATAAA-AAAAAAAAGAG
23110916 GAAATCGAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 4 0.09
55 33 0.73
56 8 0.18
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (55 bp):
ATTAATAGCATTAATAATAATAATAAATAAATATTTAATAAAAAAAAAAAGAGAT
Found at i:23111814 original size:163 final size:162
Alignment explanation
Indices: 23111623--23111948 Score: 469
Period size: 163 Copynumber: 2.0 Consensus size: 162
23111613 AATTTTAATT
** **
23111623 GGTTTATAATTTAGTCCTTTGACTGTTTGACTGTGCCAGAGGTTGCCACGTGTCATGT-ATTGGA
1 GGTTTATAAACTAGTCCTTTGACTGTTTGACTGCACCAGAGGTTGCCACGTGTCAT-TCATTGGA
* *
23111687 TTATTTATGCATTTAGTCCTTTTTTATTTTTTATTTGTTTTAATTTAATCCCCAAATCAAC-TTT
65 TTATTCATGCATTTAGTCC-TTTTTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTT
*
23111751 ATTTTAATTACGAAATTGGCCCAATAA-TTTTTCAA
129 A-TTTAATTACAAAATTGGCCCAA-AATTTTTTCAA
*
23111786 GGTTTATAAACTAGTCCTTTGACTGTTTGACTGCACCAGAGGTTGCCACGTGTCATTCTTTGGAT
1 GGTTTATAAACTAGTCCTTTGACTGTTTGACTGCACCAGAGGTTGCCACGTGTCATTCATTGGAT
* * ** *
23111851 TATTCCTTCATTTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCTTAAATCGACTTTTAT
66 TATTCATGCATTTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTAT
*
23111916 TTAATTACAAAATTGGTCCAAAATTTTTTCAA
131 TTAATTACAAAATTGGCCCAAAATTTTTTCAA
23111948 G
1 G
23111949 ATTTCCAAAT
Statistics
Matches: 146, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
161 2 0.01
162 67 0.46
163 77 0.53
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.46
Consensus pattern (162 bp):
GGTTTATAAACTAGTCCTTTGACTGTTTGACTGCACCAGAGGTTGCCACGTGTCATTCATTGGAT
TATTCATGCATTTAGTCCTTTTTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTAT
TTAATTACAAAATTGGCCCAAAATTTTTTCAA
Found at i:23112081 original size:30 final size:29
Alignment explanation
Indices: 23112045--23112160 Score: 126
Period size: 30 Copynumber: 3.9 Consensus size: 29
23112035 AAATTGTCCA
23112045 AAAATTACATTTTACCCCCGAAACTTTTCC
1 AAAATTACATTTTA-CCCCGAAACTTTTCC
* *
23112075 AAAATTATATTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTT-ACCCCGAAACTTTTCC
* * * *
23112105 AAAATTATACTTTGACCCC-AAAATTTTCA
1 AAAATTACA-TTTTACCCCGAAACTTTTCC
23112134 AAAATTACCATTTTACCCCCGAAACTT
1 AAAATTA-CATTTTA-CCCCGAAACTT
23112161 ACAAAATTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
29 19 0.26
30 45 0.62
31 9 0.12
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (29 bp):
AAAATTACATTTTACCCCGAAACTTTTCC
Found at i:23112197 original size:59 final size:59
Alignment explanation
Indices: 23112132--23112683 Score: 759
Period size: 59 Copynumber: 9.4 Consensus size: 59
23112122 CCAAAATTTT
* *
23112132 CAAAAATTACCATTTTACCCCCGAAACTTAC-AAAATTCCATTTTTAACCCTGATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTT-CTAAAATTCCATTTTTAACCCCGATTTCAC
* ** *
23112191 CGAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCTAATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
** * * * *
23112250 CGGAAATTGCCATTTTACCCCCGAATCTTTTAAAATTCTA-TTTTAACCCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * *
23112308 CGAAAATTACTATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * * *
23112367 CAAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCTA-TTTTAACCCCAATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * * *
23112425 CAAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCGTTTTTAAACCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * *
23112484 CGAAAATTACCATTTTACCCCTGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * * **
23112543 CAAAAATTACCATTTTACCCCCGAATCTCCTAAAATTCCGTTTTTAACCCTAATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * *
23112602 TAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCGTTTTTAACCCCGATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
*
23112661 CAAAAATTACCATTTTGCCCCCG
1 CAAAAATTACCATTTTACCCCCG
23112684 GGTATCCATA
Statistics
Matches: 437, Mismatches: 53, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
58 104 0.24
59 333 0.76
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (59 bp):
CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
Found at i:23112323 original size:117 final size:117
Alignment explanation
Indices: 23112131--23112683 Score: 745
Period size: 117 Copynumber: 4.7 Consensus size: 117
23112121 CCCAAAATTT
* * * *
23112131 TCAAAAATTACCATTTTACCCCCGAAACTTAC-AAAATTCCATTTTTAACCCTGATTTCACCGAA
1 TCAAAAATTACCATTTTACCCCCGAAGCTT-CTAAAATTCTA-TTTTAACCCCGATTTCACCAAA
23112195 AATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCTAATTTCA
64 AATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCTAATTTCA
** * * * *
23112249 TCGGAAATTGCCATTTTACCCCCGAATCTTTTAAAATTCTATTTTAACCCCGATTTCACCGAAAA
1 TCAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCTATTTTAACCCCGATTTCACCAAAAA
* **
23112314 TTACTATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCA
66 TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCTAATTTCA
* * *
23112366 TCAAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCTATTTTAACCCCAATTTCACCAAAAA
1 TCAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCTATTTTAACCCCGATTTCACCAAAAA
* * * *
23112431 TTACCATTTTACCCCCGAATCTTTTAAAATTCCGTTTTTAAACCC-GATTTCA
66 TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTT-AACCCTAATTTCA
* * * * *
23112483 CCGAAAATTACCATTTTACCCCTGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAA
1 TCAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCTA-TTTTAACCCCGATTTCACCAAAA
* * *
23112548 ATTACCATTTTACCCCCGAATCTCCTAAAATTCCGTTTTTAACCCTAATTTCA
65 ATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCTAATTTCA
*
23112601 -CTAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCGT-TTTTAACCCCGATTTCATCAA
1 TC-AAAAATTACCATTTTACCCCCGAAGCTTCTAAAATT-C-TATTTTAACCCCGATTTCACCAA
*
23112664 AAATTACCATTTTGCCCCCG
63 AAATTACCATTTTACCCCCG
23112684 GGTATCCATA
Statistics
Matches: 394, Mismatches: 34, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
117 215 0.55
118 178 0.45
119 1 0.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (117 bp):
TCAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCTATTTTAACCCCGATTTCACCAAAAA
TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCTAATTTCA
Found at i:23112479 original size:176 final size:176
Alignment explanation
Indices: 23112134--23112683 Score: 829
Period size: 176 Copynumber: 3.1 Consensus size: 176
23112124 AAAATTTTCA
* * * *
23112134 AAAATTACCATTTTACCCCCGAAACTTAC-AAAATTCCATTTTTAACCCTGATTTCACCGAAAAT
1 AAAATTACCATTTTACCCCCGAAGCTT-CTAAAATTCCATTTTTAACCCCGATTTCATCAAAAAT
* * * ** *
23112198 TACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCTAATTTCATCGGAAATTGCCAT
65 TACCATTTTACCCCCGAATCTTCTAAAATTCTA-TTTTAACCCTAATTTCACCAAAAATTACCAT
23112263 TTTACCCCCGAATCTTTTAAAATT-C-TATTTTAACCCCGATTTCACCG
129 TTTACCCCCGAATCTTTTAAAATTCCGT-TTTTAACCCCGATTTCACCG
*
23112310 AAAATTACTATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATT
1 AAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATT
* *
23112375 ACCATTTTACCCCCGAATCTTTTAAAATTCTATTTTAACCCCAATTTCACCAAAAATTACCATTT
66 ACCATTTTACCCCCGAATCTTCTAAAATTCTATTTTAACCCTAATTTCACCAAAAATTACCATTT
*
23112440 TACCCCCGAATCTTTTAAAATTCCGTTTTTAAACCCGATTTCACCG
131 TACCCCCGAATCTTTTAAAATTCCGTTTTTAACCCCGATTTCACCG
*
23112486 AAAATTACCATTTTACCCCTGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATT
1 AAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATT
* *
23112551 ACCATTTTACCCCCGAATCTCCTAAAATTCCGT-TTTTAACCCTAATTTCACTAAAAATTACCAT
66 ACCATTTTACCCCCGAATCTTCTAAAATT-C-TATTTTAACCCTAATTTCACCAAAAATTACCAT
* * * *
23112615 TTTACCCCCGAAGCTTCTAAAATTCCGTTTTTAACCCCGATTTCATCA
129 TTTACCCCCGAATCTTTTAAAATTCCGTTTTTAACCCCGATTTCACCG
*
23112663 AAAATTACCATTTTGCCCCCG
1 AAAATTACCATTTTACCCCCG
23112684 GGTATCCATA
Statistics
Matches: 342, Mismatches: 27, Indels: 9
0.90 0.07 0.02
Matches are distributed among these distances:
175 51 0.15
176 197 0.58
177 93 0.27
178 1 0.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (176 bp):
AAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATT
ACCATTTTACCCCCGAATCTTCTAAAATTCTATTTTAACCCTAATTTCACCAAAAATTACCATTT
TACCCCCGAATCTTTTAAAATTCCGTTTTTAACCCCGATTTCACCG
Found at i:23124730 original size:32 final size:32
Alignment explanation
Indices: 23124626--23124738 Score: 111
Period size: 32 Copynumber: 3.4 Consensus size: 32
23124616 TCTTCATCTC
*
23124626 TGAAATTGAAGTAAGAGCAACGTCGTCCCC-T
1 TGAAATTGAAGTAAGAGCAACGTCATCCCCTT
* * * ** *
23124657 TGAAATTGAAGTAGAGTGGATAACATGTCTTCATCTC
1 TGAAATTGAAGTA-AG-AG-CAAC--GTCATCCCCTT
23124694 TGAAATTGAAGTAAGAGCAACGTCATCCCCTT
1 TGAAATTGAAGTAAGAGCAACGTCATCCCCTT
23124726 TGAAATTGAAGTA
1 TGAAATTGAAGTA
23124739 GAGTGGATAA
Statistics
Matches: 64, Mismatches: 12, Indels: 11
0.74 0.14 0.13
Matches are distributed among these distances:
31 13 0.20
32 22 0.34
33 1 0.02
34 6 0.09
35 1 0.02
36 8 0.12
37 13 0.20
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (32 bp):
TGAAATTGAAGTAAGAGCAACGTCATCCCCTT
Found at i:23124767 original size:69 final size:69
Alignment explanation
Indices: 23124575--23125788 Score: 1672
Period size: 69 Copynumber: 17.5 Consensus size: 69
23124565 TTGCAGATCT
* * * *
23124575 CAACGTCATCCCCTTGAAATTGAAGTAGAG-TGGATAGCATGTCTTCATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23124639 AGAG
66 AGAG
* * * * *
23124643 CAACGTCGTCCCCTTGAAATTGAAGTAGAG-TGGATAACATGTCTTCATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23124707 AGAG
66 AGAG
* * *
23124711 CAACGTCATCCCCTTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAAATTGAAGT
1 CAACGTCATCCTC-TTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGT
23124775 AAGAG
65 AAGAG
** *
23124780 CAACGTCATCCTCTCAAAATTGAAGTAGAGTTGGATATCGGGTCTTTATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23124845 AGAG
66 AGAG
* *
23124849 CAACAG-CATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGTCTTTATCTCCGAAATTGAAGT
1 CAAC-GTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGT
23124913 AAGAG
65 AAGAG
* * * *
23124918 CAACGTCATCCCCTCGAAATTGAAGTAGAATTGGATATCGGGTCTTTATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23124983 AGAG
66 AGAG
* *
23124987 CAACGTCATCCTCTCGAAATTGAAGTAGAGTTGGATATCGGGTCTTTATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23125052 AGAG
66 AGAG
* *
23125056 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGTCTTTATCTCCGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23125121 AGAG
66 AGAG
* * *
23125125 CAACGTCATCCTCTCGAAATTGAAGTAGAATTGGATATCGGGTCTTTATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23125190 AGAG
66 AGAG
*
23125194 CAACGTCATCCTCTCGAAATTGAAGTAGAGTTGGATATC-GAGTCTTTATCTCTGAAATTGAAGT
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAG-GTCTTTATCTCTGAAATTGAAGT
23125258 AAGAG
65 AAGAG
* * *
23125263 CAACGGCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGTCTTTATCTCCGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23125328 AGAG
66 AGAG
* * * *
23125332 CAACGTCATCCCCTCGAAATTGAAGTAGAATTGGATATCGGGTCTTTATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23125397 AGAG
66 AGAG
* * *
23125401 CAACGTCATCCTCTCGAAA-TGAAGTAGAATTGGATATCGGGTCTTTATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23125465 AGAG
66 AGAG
* *
23125469 CAACGTCATCCTCTCGAAATTGAAGTAGAGTTGGATATCGGGTCTTTATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23125534 AGAG
66 AGAG
* * * *
23125538 CAACGACATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGTCTTTATCTCCGAGATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
23125603 AGAG
66 AGAG
* * *** * * * * *
23125607 CAACGTCATCCCCTTGAAATTGAAGTAGAG-TGGATAACATAACGTCATCCCCTTTAAATTGACG
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTAT-CTC-TGAAATTGAAG
*
23125671 TAGAGTGGAT
64 TA-A---GAG
* * * * *
23125681 AACACGTCTTCATCC-CTTGGAATTGAAGTAGAG-TGGATAGCACGTCTTCATCTCTGAAATTGA
1 CA-ACG---TCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGA
23125744 AGTAAGAG
62 AGTAAGAG
* * *
23125752 CAATGTTATCCTCTTGAAATTGAAGTAAAGTTGGATA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATA
23125789 GCAAAGTCTC
Statistics
Matches: 1044, Mismatches: 83, Indels: 37
0.90 0.07 0.03
Matches are distributed among these distances:
67 5 0.00
68 191 0.18
69 776 0.74
70 12 0.01
71 4 0.00
74 4 0.00
75 14 0.01
76 2 0.00
77 30 0.03
78 6 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (69 bp):
CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATATCAGGTCTTTATCTCTGAAATTGAAGTA
AGAG
Found at i:23125712 original size:38 final size:39
Alignment explanation
Indices: 23125612--23125747 Score: 170
Period size: 39 Copynumber: 3.6 Consensus size: 39
23125602 AAGAGCAACG
*** *
23125612 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACATAACG
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* *
23125651 TCATCCCCTTTAAATTGACGTAGAGTGGATAACACGTCT
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* *
23125690 TCAT-CCCTTGGAATTGAAGTAGAGTGGATAGCACGTCT
1 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
*
23125728 TCAT-CTC-TGAAATTGAAGTA
1 TCATCCCCTTGAAATTGAAGTA
23125748 AGAGCAATGT
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
37 12 0.14
38 36 0.42
39 37 0.44
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (39 bp):
TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
Found at i:23126094 original size:6 final size:6
Alignment explanation
Indices: 23126080--23126146 Score: 75
Period size: 6 Copynumber: 11.2 Consensus size: 6
23126070 TCTAAATTTG
* * *
23126080 TTTAAA TTTAGA TTT-AT TTTAAA TTTAAA ATTAGATA TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA-A-A TTTAAA TTTAAA
23126128 TTTAAA TTTAAA TTTAAA T
1 TTTAAA TTTAAA TTTAAA T
23126147 AAAGATTAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
5 8 0.16
6 37 0.73
7 2 0.04
8 4 0.08
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:23126102 original size:27 final size:25
Alignment explanation
Indices: 23126056--23126105 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 25
23126046 GACTTTTGAG
23126056 TTAAATTGATTTTTTCTAAATTTGT
1 TTAAATTGATTTTTTCTAAATTTGT
23126081 TTAAATTTAGATTTATTT-TAAATTT
1 TTAAA-TT-GATTT-TTTCTAAATTT
23126106 AAAATTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 5 0.23
26 2 0.09
27 12 0.55
28 3 0.14
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (25 bp):
TTAAATTGATTTTTTCTAAATTTGT
Found at i:23126113 original size:23 final size:20
Alignment explanation
Indices: 23126097--23126145 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 20
23126087 TTAGATTTAT
23126097 TTTAAATTTAAAATTAGATA
1 TTTAAATTTAAAATTAGATA
*
23126117 TTTAAATTT-AATTTA-A-A
1 TTTAAATTTAAAATTAGATA
23126134 TTTAAATTTAAA
1 TTTAAATTTAAA
23126146 TAAAGATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 10 0.37
18 3 0.11
19 5 0.19
20 9 0.33
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TTTAAATTTAAAATTAGATA
Found at i:23128024 original size:162 final size:162
Alignment explanation
Indices: 23127752--23128076 Score: 467
Period size: 162 Copynumber: 2.0 Consensus size: 162
23127742 AATTTTAATT
* ** *
23127752 GGTTTATAATTAGTCCTTTGACTGTTTGACTGTGCCAGAGGTTGCCACGTGTCATGTATTGGATT
1 GGTTTATAACTAGTCCTTTGACTGTTTGACTGCACCAGAAGTTGCCACGTGTCATGTATTGGATT
* *
23127817 ATTTATGCATTTAGTCCTTTTTTATTTTTTATTTGTTTTAATTTAATCCCCAAATCAAC-TTTAT
66 ATTCATGCATTTAGTCCTTTTTTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTA-
* *
23127881 TTTAATTACGAAATTGGCCCAATAATTTTTCAA
130 TTTAATTACAAAATTGGCCCAAAAATTTTTCAA
*
23127914 GGTTTATAAACTAGTCCTTTGACTGTTTGACTGCACCAGAAGTTGCCACGTGTCAT-TCTTTGGA
1 GGTTTAT-AACTAGTCCTTTGACTGTTTGACTGCACCAGAAGTTGCCACGTGTCATGT-ATTGGA
* * ** *
23127978 TTATTCCTTCATTTAGTCC-TTTTTATTTTTAATTTGTTTTAATTTAATCCTTAAATCGACTTTT
64 TTATTCATGCATTTAGTCCTTTTTTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTT
*
23128042 ATTTAATTACAAAATTGGTCCAAAAATTTTTCAA
129 ATTTAATTACAAAATTGGCCCAAAAATTTTTCAA
23128076 G
1 G
23128077 ATTCCAAATT
Statistics
Matches: 145, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
162 76 0.52
163 69 0.48
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (162 bp):
GGTTTATAACTAGTCCTTTGACTGTTTGACTGCACCAGAAGTTGCCACGTGTCATGTATTGGATT
ATTCATGCATTTAGTCCTTTTTTATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTTTTAT
TTAATTACAAAATTGGCCCAAAAATTTTTCAA
Found at i:23128292 original size:29 final size:29
Alignment explanation
Indices: 23128168--23128286 Score: 150
Period size: 30 Copynumber: 4.0 Consensus size: 29
23128158 CCCTAAATTG
23128168 TCCAGAAATTACATTTTACCCCTAAAACTTT
1 TCCA-AAATTACATTTTACCCC-AAAACTTT
*
23128199 TCCAAAATTATATTTTGACCCCAAAACTTT
1 TCCAAAATTACATTTT-ACCCCAAAACTTT
* *
23128229 TCCAAAATTATACTTTGACCCCAAAA-TTT
1 TCCAAAATTACA-TTTTACCCCAAAACTTT
*
23128258 TCAAAAATTACCATTTTACCCCAAAACTT
1 TCCAAAATTA-CATTTTACCCCAAAACTT
23128287 ACAAAATTCC
Statistics
Matches: 79, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
29 24 0.30
30 43 0.54
31 12 0.15
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (29 bp):
TCCAAAATTACATTTTACCCCAAAACTTT
Found at i:23128308 original size:29 final size:29
Alignment explanation
Indices: 23128173--23128301 Score: 97
Period size: 30 Copynumber: 4.4 Consensus size: 29
23128163 AATTGTCCAG
* *
23128173 AAATTA-CATTTTACCCCTAAAACTTTTCCA
1 AAATTACCATTTTACCCC-AAAAC-TTACAA
* * *
23128203 AAATTA-TATTTTGACCCCAAAACTTTTCCA
1 AAATTACCATTTT-ACCCCAAAAC-TTACAA
* * * *
23128233 AAATTA-TACTTTGACCCCAAAATTTTCAA
1 AAATTACCA-TTTTACCCCAAAACTTACAA
23128262 AAATTACCATTTTACCCCAAAACTTAC-A
1 AAATTACCATTTTACCCCAAAACTTACAA
23128290 AAATT-CCATTTT
1 AAATTACCATTTT
23128302 TAACCCCGAT
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
27 7 0.08
28 6 0.07
29 26 0.30
30 41 0.47
31 8 0.09
ACGTcount: A:0.39, C:0.24, G:0.02, T:0.36
Consensus pattern (29 bp):
AAATTACCATTTTACCCCAAAACTTACAA
Found at i:23128366 original size:59 final size:59
Alignment explanation
Indices: 23128259--23128986 Score: 1068
Period size: 59 Copynumber: 12.4 Consensus size: 59
23128249 CCAAAATTTT
* * **
23128259 CAAAAATTACCATTTTA-CCCCAAAACTTACAAAATTCCATTTTTAACCCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* * *
23128317 CGAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCTGATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* * * *
23128376 CGAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCTA-TTTTAACCCCGATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* * * *
23128434 CGAAAATTATCATTTTACCCTCGAATCTTTTAAAATTCCATTTTTAACCCC-ATTTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGA-TTTCAC
*
23128493 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* * *
23128552 CAAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCTA-TTTTAACCCCGATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* *
23128610 CAAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAAACCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* * *
23128669 CGAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAT
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* * **
23128728 CGAAAATTACCATTTTACCCCCGAATCTCCTAAAATTCCATTTTTAACCCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* * * * *
23128787 CGAAAATTACCATTTTACCCCCAAAACTTCTAAAATTCCATTTTTAACCCCGGTTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* * *
23128846 CAAAAATTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCTCGATTTCCC
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
* *
23128905 CAAAAATTACCATTTTACCCTCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
1 CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
*
23128964 CAAAAATTACCGTTTTACCCCCG
1 CAAAAATTACCATTTTACCCCCG
23128987 GATATCCATA
Statistics
Matches: 618, Mismatches: 47, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
58 128 0.21
59 489 0.79
60 1 0.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (59 bp):
CAAAAATTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCAC
Found at i:23128501 original size:176 final size:176
Alignment explanation
Indices: 23128259--23128985 Score: 1100
Period size: 176 Copynumber: 4.1 Consensus size: 176
23128249 CCAAAATTTT
** *
23128259 CAAAAATTACCATTTTA-CCCCAAAACTTACAAAATTCCATTTTTAACCCCGATTTCACCGAAAA
1 CAAAAATTACCATTTTACCCCCAAAACTTTTAAAATTCCATTTTTAACCCC-ATTTCACCAAAAA
* * *
23128323 TTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCTGATTTCATCGAAAATTACCA
65 TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
* * *
23128388 TTTTACCCCCGAATCTTTTAAAATTCTA-TTTTAACCCCGATTTCAT
130 TTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * * * *
23128434 CGAAAATTATCATTTTACCCTCGAATCTTTTAAAATTCCATTTTTAACCCCATTTTCACCAAAAA
1 CAAAAATTACCATTTTACCCCCAAAACTTTTAAAATTCCATTTTTAACCCCA-TTTCACCAAAAA
*
23128499 TTACCATTTTACCCCCGAAGCTTTTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
65 TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
* * *
23128564 TTTTACCCCCGAATCTTTTAAAATTCTA-TTTTAACCCCGATTTCAT
130 TTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * * *
23128610 CAAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTAAACCCGATTTCACCGAAAA
1 CAAAAATTACCATTTTACCCCCAAAACTTTTAAAATTCCATTTTT-AACCCCATTTCACCAAAAA
*
23128675 TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCGAAAATTACCA
65 TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
*
23128740 TTTTACCCCCGAATCTCCTAAAATTCCATTTTTAACCCCGATTTCAC
130 TTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
* * *
23128787 CGAAAATTACCATTTTACCCCCAAAACTTCTAAAATTCCATTTTTAACCCCGGTTTCACCAAAAA
1 CAAAAATTACCATTTTACCCCCAAAACTTTTAAAATTCCATTTTTAACCCC-ATTTCACCAAAAA
* **
23128852 TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCTCGATTTCCCCAAAAATTACCA
65 TTACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCA
* *
23128917 TTTTACCCTCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
130 TTTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
*
23128964 CAAAAATTACCGTTTTACCCCC
1 CAAAAATTACCATTTTACCCCC
23128986 GGATATCCAT
Statistics
Matches: 510, Mismatches: 37, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
175 16 0.03
176 294 0.58
177 200 0.39
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (176 bp):
CAAAAATTACCATTTTACCCCCAAAACTTTTAAAATTCCATTTTTAACCCCATTTCACCAAAAAT
TACCATTTTACCCCCGAAGCTTCTAAAATTCCATTTTTAACCCCGATTTCATCAAAAATTACCAT
TTTACCCCCGAATCTTCTAAAATTCCATTTTTAACCCCGATTTCAC
Found at i:23136847 original size:27 final size:27
Alignment explanation
Indices: 23136808--23136870 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
23136798 ATTCAGCGCT
*
23136808 CAAAGCACGTCATCTCAGCCGGCTGTA
1 CAAAGCACTTCATCTCAGCCGGCTGTA
23136835 CAAAGCACTTCATCTCAGCCGGCTGTA
1 CAAAGCACTTCATCTCAGCCGGCTGTA
23136862 CAAAGCACT
1 CAAAGCACT
23136871 AGAAGGATCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (27 bp):
CAAAGCACTTCATCTCAGCCGGCTGTA
Found at i:23146506 original size:19 final size:18
Alignment explanation
Indices: 23146477--23146529 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 18
23146467 CTACACAACG
* *
23146477 GTTTGTTTTAATAAAAAA
1 GTTTTTTTTAACAAAAAA
*
23146495 GTTTATTTTTAACCAAAAA
1 GTTT-TTTTTAACAAAAAA
*
23146514 GTTTTTTTTATCAAAA
1 GTTTTTTTTAACAAAA
23146530 TCAACATTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.47
Consensus pattern (18 bp):
GTTTTTTTTAACAAAAAA
Found at i:23150184 original size:20 final size:21
Alignment explanation
Indices: 23150147--23150185 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
23150137 AAACCGAGCA
23150147 TCACTAAGTTAGAAAATGCAG
1 TCACTAAGTTAGAAAATGCAG
23150168 TCACTAAGTTA-AAAATGC
1 TCACTAAGTTAGAAAATGC
23150186 TAAAAATGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (21 bp):
TCACTAAGTTAGAAAATGCAG
Found at i:23150200 original size:13 final size:13
Alignment explanation
Indices: 23150182--23150206 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23150172 TAAGTTAAAA
23150182 ATGCTAAAAATGC
1 ATGCTAAAAATGC
23150195 ATGCTAAAAATG
1 ATGCTAAAAATG
23150207 ATAAAATGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCTAAAAATGC
Found at i:23155373 original size:19 final size:18
Alignment explanation
Indices: 23155344--23155382 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
23155334 TAGCAATATT
23155344 TCTTTTTTTTTCTTTTTC
1 TCTTTTTTTTTCTTTTTC
23155362 TCTTTTTCTTTTCTTTTTC
1 TCTTTTT-TTTTCTTTTTC
23155381 TC
1 TC
23155383 ATTCACAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TCTTTTTTTTTCTTTTTC
Found at i:23165050 original size:21 final size:21
Alignment explanation
Indices: 23165011--23165050 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
23165001 AACAAATCAG
*
23165011 TAACAAATAAAGATTAAGAAA
1 TAACAAATAAAGATAAAGAAA
23165032 TAACAAATAAATGA-AAAGA
1 TAACAAATAAA-GATAAAGA
23165051 CAAATATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (21 bp):
TAACAAATAAAGATAAAGAAA
Found at i:23176069 original size:2 final size:2
Alignment explanation
Indices: 23176064--23176100 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
23176054 TCTCTCTCTC
*
23176064 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23176101 GAAAAGTATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:23194004 original size:30 final size:30
Alignment explanation
Indices: 23193970--23194159 Score: 164
Period size: 30 Copynumber: 6.6 Consensus size: 30
23193960 GAGAATTTAA
*
23193970 GGTCAAAAAGTAATTTTGGAAAAGTTTGAG
1 GGTCAAAATGTAATTTTGGAAAAGTTTGAG
* *
23194000 GGTCAAAATGTAATTTTGGTAAGGTTT-AG
1 GGTCAAAATGTAATTTTGGAAAAGTTTGAG
*** *
23194029 GGTCAAAATACGATTTTAGG-AAAGTTTAAG
1 GGTCAAAATGTAATTTT-GGAAAAGTTTGAG
* *
23194059 GGTTAAAATGTAA-TTT-----AGTTCGAG
1 GGTCAAAATGTAATTTTGGAAAAGTTTGAG
* * *
23194083 GGTCAAAATGTAATGTTGGAGAAGTTTGAA
1 GGTCAAAATGTAATTTTGGAAAAGTTTGAG
*
23194113 GGTCAAAATGTAATTTTGAAAAAGTTTTG-G
1 GGTCAAAATGTAATTTTGGAAAAG-TTTGAG
* *
23194143 GGTTAAAATATAATTTT
1 GGTCAAAATGTAATTTT
23194160 TGACTCTTTA
Statistics
Matches: 128, Mismatches: 23, Indels: 18
0.76 0.14 0.11
Matches are distributed among these distances:
24 18 0.14
25 2 0.02
29 25 0.20
30 79 0.62
31 4 0.03
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (30 bp):
GGTCAAAATGTAATTTTGGAAAAGTTTGAG
Found at i:23194137 original size:84 final size:83
Alignment explanation
Indices: 23193992--23194158 Score: 194
Period size: 84 Copynumber: 2.0 Consensus size: 83
23193982 ATTTTGGAAA
* * * * * *
23193992 AGTTTGAGGGTCAAAATGTAATTTTGGTAAGGTTTAGGGTCAAAATACGATTTTAGGAAAGTTTA
1 AGTTCGAGGGTCAAAATGTAATGTTGGTAAAGTTTAAGGTCAAAATACAATTTTAGAAAAGTTTA
*
23194057 AGGGTTAAAATGTAATTT
66 AGGGTTAAAATATAATTT
**
23194075 AGTTCGAGGGTCAAAATGTAATGTTGG-AGAAGTTTGAAGGTCAAAATGTAATTTT-GAAAAAGT
1 AGTTCGAGGGTCAAAATGTAATGTTGGTA-AAGTTT-AAGGTCAAAATACAATTTTAG-AAAAGT
**
23194138 TTTGGGGTTAAAATATAATTT
63 TTAAGGGTTAAAATATAATTT
23194159 TTGACTCTTT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
82 1 0.01
83 31 0.44
84 38 0.54
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.35
Consensus pattern (83 bp):
AGTTCGAGGGTCAAAATGTAATGTTGGTAAAGTTTAAGGTCAAAATACAATTTTAGAAAAGTTTA
AGGGTTAAAATATAATTT
Found at i:23194800 original size:22 final size:22
Alignment explanation
Indices: 23194743--23194801 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 22
23194733 AAACATTTGA
* *
23194743 TTTCCTTTATTTTTCAAATCTGT
1 TTTCATTTA-TTTTCAAACCTGT
*
23194766 TTTCATTT-TTTTTAAACCTGT
1 TTTCATTTATTTTCAAACCTGT
*
23194787 TTCTTATTTATTTTC
1 TT-TCATTTATTTTC
23194802 TTGTTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
21 13 0.45
22 5 0.17
23 11 0.38
ACGTcount: A:0.17, C:0.15, G:0.03, T:0.64
Consensus pattern (22 bp):
TTTCATTTATTTTCAAACCTGT
Found at i:23195114 original size:10 final size:10
Alignment explanation
Indices: 23195099--23195123 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23195089 ACTGTTTCGA
23195099 AATAAATGGT
1 AATAAATGGT
23195109 AATAAATGGT
1 AATAAATGGT
23195119 AATAA
1 AATAA
23195124 TAAAGGCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (10 bp):
AATAAATGGT
Found at i:23205908 original size:15 final size:15
Alignment explanation
Indices: 23205888--23205923 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
23205878 ACAAACAATT
23205888 CAATTATAATCTATA
1 CAATTATAATCTATA
23205903 CAATTATAATCTATA
1 CAATTATAATCTATA
23205918 CAATTA
1 CAATTA
23205924 CAAACTAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (15 bp):
CAATTATAATCTATA
Found at i:23206391 original size:18 final size:21
Alignment explanation
Indices: 23206351--23206404 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
23206341 TGGAAAGGTT
23206351 CTACCGATACAAGTATGACTA
1 CTACCGATACAAGTATGACTA
* * *
23206372 CTACCGATACAATTATTACTT
1 CTACCGATACAAGTATGACTA
*
23206393 CTATCGATACAA
1 CTACCGATACAA
23206405 CAAATTCTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (21 bp):
CTACCGATACAAGTATGACTA
Found at i:23206712 original size:14 final size:14
Alignment explanation
Indices: 23206693--23206721 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
23206683 TCACATGACA
23206693 ATACTTGTTCCATC
1 ATACTTGTTCCATC
23206707 ATACTTGTTCCATC
1 ATACTTGTTCCATC
23206721 A
1 A
23206722 CATAACCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.28, G:0.07, T:0.41
Consensus pattern (14 bp):
ATACTTGTTCCATC
Found at i:23207355 original size:120 final size:120
Alignment explanation
Indices: 23207142--23207376 Score: 362
Period size: 120 Copynumber: 2.0 Consensus size: 120
23207132 GCTTCCACAA
*
23207142 GCTATAATCCAGAATTTCATCCTCATATCTATATCAACTCTGTTACCAGTATACGATGCTGCTCA
1 GCTATAATCCAGAATTTCATCCTCATATCTATATCAACTCTGTTACCAGTATACGATGCTACTCA
* **
23207207 CATGAGCTGTCGAGGACTCATAACATATGCGGTACCCCAGCCATCGATACAGTGT
66 CACGAGCTACCGAGGACTCATAACATATGCGGTACCCCAGCCATCGATACAGTGT
* * * * * * *
23207262 GCTATAATCCAGAATTTCATTCTCATGTTTGTATCAACTTTGTTATCAGTATATGATGCTACTCA
1 GCTATAATCCAGAATTTCATCCTCATATCTATATCAACTCTGTTACCAGTATACGATGCTACTCA
*
23207327 CACGAGCTACCGAGGACTCGTAACATATGCGGTACCCCAGCCATCGATAC
66 CACGAGCTACCGAGGACTCATAACATATGCGGTACCCCAGCCATCGATAC
23207377 GGTATCTGTG
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 103 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (120 bp):
GCTATAATCCAGAATTTCATCCTCATATCTATATCAACTCTGTTACCAGTATACGATGCTACTCA
CACGAGCTACCGAGGACTCATAACATATGCGGTACCCCAGCCATCGATACAGTGT
Found at i:23210963 original size:18 final size:18
Alignment explanation
Indices: 23210935--23210978 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
23210925 AGTGAAATTT
*
23210935 ATATGAAAATCCCTGAAGG
1 ATAT-AAAATCCCTAAAGG
* *
23210954 ATTTAAAATCTCTAAAGG
1 ATATAAAATCCCTAAAGG
23210972 ATATAAA
1 ATATAAA
23210979 GTTTCTCGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (18 bp):
ATATAAAATCCCTAAAGG
Found at i:23212808 original size:18 final size:17
Alignment explanation
Indices: 23212776--23212818 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
23212766 TTGAAGTTTC
23212776 ATAATAATTTTTATTATAA
1 ATAAT-ATTTTTATT-TAA
23212795 A-AATATTTTATATTTAA
1 ATAATATTTT-TATTTAA
23212812 ATAATAT
1 ATAATAT
23212819 CCAAATGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.41
18 12 0.55
19 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATAATATTTTTATTTAA
Found at i:23239002 original size:23 final size:22
Alignment explanation
Indices: 23238976--23239019 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
23238966 AAAATATTTC
*
23238976 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
23238999 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
23239020 TTATTCTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:23241044 original size:15 final size:15
Alignment explanation
Indices: 23241011--23241055 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
23241001 CGCGACAAAG
* *
23241011 TCTTCCTCTTTCTCG
1 TCTTCTTCTTTCTCT
23241026 TCTTC--CTTTC-CT
1 TCTTCTTCTTTCTCT
23241038 TCTTCTTCTTTCTCT
1 TCTTCTTCTTTCTCT
23241053 TCT
1 TCT
23241056 GCCTTCTCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 6 0.23
13 5 0.19
14 5 0.19
15 10 0.38
ACGTcount: A:0.00, C:0.38, G:0.02, T:0.60
Consensus pattern (15 bp):
TCTTCTTCTTTCTCT
Found at i:23251108 original size:25 final size:24
Alignment explanation
Indices: 23251051--23251109 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
23251041 CAAAATAAGT
* *
23251051 TATA-TATTATTTTTCTAATATTA
1 TATATTATAATTTTTCTAATATCA
23251074 TATATTATAATTTTTACTAAT-TCA
1 TATATTATAATTTTT-CTAATATCA
*
23251098 TATTTTAATAAT
1 TATATT-ATAAT
23251110 AATTATATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 4 0.13
24 16 0.53
25 10 0.33
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (24 bp):
TATATTATAATTTTTCTAATATCA
Found at i:23251220 original size:31 final size:31
Alignment explanation
Indices: 23251127--23251222 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 31
23251117 TTAAAAATAT
* *
23251127 TATTAAATTATATT-TTATTT-TATTATATTG
1 TATTAAATTA-ATTATTATTTTTATTAAATTA
* * *
23251157 TATTTAA-TAATAATTA-TGTTA--AAA-TA
1 TATTAAATTAATTATTATTTTTATTAAATTA
23251183 TAATTAAATTAATTATTATTTTTATTAAATTA
1 T-ATTAAATTAATTATTATTTTTATTAAATTA
23251215 TATTAAAT
1 TATTAAAT
23251223 AATAATCTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 15
0.68 0.11 0.21
Matches are distributed among these distances:
26 2 0.04
27 7 0.14
28 11 0.22
29 11 0.22
30 6 0.12
31 10 0.20
32 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (31 bp):
TATTAAATTAATTATTATTTTTATTAAATTA
Found at i:23251239 original size:58 final size:59
Alignment explanation
Indices: 23251074--23251244 Score: 199
Period size: 58 Copynumber: 2.9 Consensus size: 59
23251064 TCTAATATTA
* * *
23251074 TATATTATAATTTTTACT-AATTCATATTTTAATAATAATTATATTAAAAATATTATTAAAT
1 TATATTATTATTTTTATTAAATT-ATA-TTTAATAATAATTATATT-AAAATATAATTAAAT
* * *
23251135 TATATT-TTA-TTTTATTATATTGTATTTAATAATAATTATGTTAAAATATAATTAAAT
1 TATATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAAT
* *
23251192 TA-ATTATTATTTTTATTAAATTATATTAAATAATAATCT-TATTAAAATTTAAT
1 TATATTATTATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAATATAAT
23251245 AACAGTAATC
Statistics
Matches: 95, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
56 3 0.03
57 19 0.20
58 53 0.56
59 9 0.09
60 5 0.05
61 6 0.06
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (59 bp):
TATATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAAT
Found at i:23260754 original size:28 final size:30
Alignment explanation
Indices: 23260722--23260778 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
23260712 TTAGCTGAGT
*
23260722 TTTAAAA-TTTAACTTTCATTTTT-TGTTG
1 TTTAAAATTTTAACTTTAATTTTTATGTTG
*
23260750 TTTAAAATTTTAATTTTAATTTTTATGTT
1 TTTAAAATTTTAACTTTAATTTTTATGTT
23260779 AATAAAAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.28
29 14 0.56
30 4 0.16
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (30 bp):
TTTAAAATTTTAACTTTAATTTTTATGTTG
Found at i:23271085 original size:17 final size:17
Alignment explanation
Indices: 23271059--23271108 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
23271049 ATAGTTTGCA
*
23271059 TGCATCTTTATTGTCAT
1 TGCATTTTTATTGTCAT
23271076 TGCATTTTTATTTTGTCAT
1 TGCATTTTTA--TTGTCAT
* *
23271095 TGAATTTTTTTTGT
1 TGCATTTTTATTGT
23271109 TAATTTAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 13 0.46
19 15 0.54
ACGTcount: A:0.16, C:0.10, G:0.12, T:0.62
Consensus pattern (17 bp):
TGCATTTTTATTGTCAT
Found at i:23285167 original size:6 final size:6
Alignment explanation
Indices: 23285158--23285240 Score: 84
Period size: 6 Copynumber: 14.3 Consensus size: 6
23285148 TTAGATTTAT
* ** *
23285158 TTTAAG TTTAAA TTTATT TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
23285205 TTT-AA TTTAAG TTTAAA TTT--A TTCTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAAA TT
23285241 AATCATTTTC
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
4 3 0.05
5 10 0.16
6 47 0.75
7 3 0.05
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:23285172 original size:17 final size:17
Alignment explanation
Indices: 23285147--23285240 Score: 134
Period size: 17 Copynumber: 5.5 Consensus size: 17
23285137 AAACTCATTT
* *
23285147 TTTAGATTTATTTTAAG
1 TTTAAATTTATTTTAAA
23285164 TTTAAATTTATTTTTAAA
1 TTTAAATTTA-TTTTAAA
23285182 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
23285199 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
*
23285216 TTTAAATTTATTCTAAA
1 TTTAAATTTATTTTAAA
23285233 TTTAAATT
1 TTTAAATT
23285241 AATCATTTTC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
17 53 0.77
18 16 0.23
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.57
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:23285173 original size:12 final size:12
Alignment explanation
Indices: 23285158--23285240 Score: 84
Period size: 11 Copynumber: 7.2 Consensus size: 12
23285148 TTAGATTTAT
*
23285158 TTTAAGTTTAAA
1 TTTAAATTTAAA
**
23285170 TTTATTTTTAAA
1 TTTAAATTTAAA
*
23285182 TTTAAATTT-AT
1 TTTAAATTTAAA
23285193 TTTAAATTTAAA
1 TTTAAATTTAAA
*
23285205 TTT-AATTTAAG
1 TTTAAATTTAAA
23285216 TTTAAATTT--A
1 TTTAAATTTAAA
23285226 TTCTAAATTTAAA
1 TT-TAAATTTAAA
23285239 TT
1 TT
23285241 AATCATTTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
10 2 0.03
11 27 0.47
12 26 0.45
13 3 0.05
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:23287153 original size:59 final size:59
Alignment explanation
Indices: 23287080--23287444 Score: 306
Period size: 59 Copynumber: 6.3 Consensus size: 59
23287070 AAAGGTCCTT
* * * * *
23287080 AAACTGTCCAAAAATCATATTTTGACCCCTATACTTCGC-AAAATAATATTTTTACCCCC
1 AAACTTTCCAAAAATCATATTTTGACCCCTAAACTTC-CAAAAATCACATTTTTGCCCCC
* * * *
23287139 AAACTTTCCAAAAATTATATTTTTACCCTTAAACTTCCAAAAATTACATTTTTGCCCCC
1 AAACTTTCCAAAAATCATATTTTGACCCCTAAACTTCCAAAAATCACATTTTTGCCCCC
* *
23287198 GAACTTTGCAAAAATTACAT-TTTTG--CCCTCAAACTTCCAAAAATCACATTTTTG-CCCC
1 AAACTTTCCAAAAA-T-CATATTTTGACCCCT-AAACTTCCAAAAATCACATTTTTGCCCCC
* *
23287256 GAAC-TTCCAAAAATTC-TATTTT-A-CCCTCGAACTTCCAAAAATCACATTTTTGCCCCC
1 AAACTTTCCAAAAA-TCATATTTTGACCCCT-AAACTTCCAAAAATCACATTTTTGCCCCC
* * * *
23287313 AAACTTCCCAAAAATTCCAT-TTTT-ACCCTTAAACTTCCCAAAATCACATTTTTGCCCTC
1 AAACTTTCCAAAAA-T-CATATTTTGACCCCTAAACTTCCAAAAATCACATTTTTGCCCCC
* * * ** * * * * *
23287372 GAAC-TTCCAAAAATCATGTTTTTG-CCCCGAATTTTCCTAAAATGATATTTTTACCCCT
1 AAACTTTCCAAAAATCAT-ATTTTGACCCCTAAACTTCCAAAAATCACATTTTTGCCCCC
*
23287430 AAAATTTCCAAAAAT
1 AAACTTTCCAAAAAT
23287445 GCATTTTAAT
Statistics
Matches: 255, Mismatches: 36, Indels: 30
0.79 0.11 0.09
Matches are distributed among these distances:
55 1 0.00
56 36 0.14
57 18 0.07
58 60 0.24
59 129 0.51
60 9 0.04
61 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (59 bp):
AAACTTTCCAAAAATCATATTTTGACCCCTAAACTTCCAAAAATCACATTTTTGCCCCC
Found at i:23287159 original size:30 final size:29
Alignment explanation
Indices: 23287080--23287444 Score: 263
Period size: 29 Copynumber: 12.5 Consensus size: 29
23287070 AAAGGTCCTT
* * *
23287080 AAACTGTCCAAAAATCATATTTTGACCCCT
1 AAACT-TCCAAAAATCACATTTTTACCCCC
* * *
23287110 ATACTTCGC-AAAATAATATTTTTACCCCC
1 AAACTTC-CAAAAATCACATTTTTACCCCC
* * **
23287139 AAACTTTCCAAAAATTATATTTTTACCCTT
1 AAAC-TTCCAAAAATCACATTTTTACCCCC
* *
23287169 AAACTTCCAAAAATTACATTTTTGCCCCC
1 AAACTTCCAAAAATCACATTTTTACCCCC
* * * * *
23287198 GAACTTTGCAAAAATTACATTTTTGCCCTC
1 AAAC-TTCCAAAAATCACATTTTTACCCCC
*
23287228 AAACTTCCAAAAATCACATTTTT-GCCCC
1 AAACTTCCAAAAATCACATTTTTACCCCC
* * *
23287256 GAACTTCCAAAAAT-TC-TATTTTACCCTC
1 AAACTTCCAAAAATCACAT-TTTTACCCCC
* *
23287284 GAACTTCCAAAAATCACATTTTTGCCCCC
1 AAACTTCCAAAAATCACATTTTTACCCCC
**
23287313 AAACTTCCCAAAAATTC-CATTTTTACCCTT
1 AAACTT-CCAAAAA-TCACATTTTTACCCCC
* * *
23287343 AAACTTCCCAAAATCACATTTTTGCCCTC
1 AAACTTCCAAAAATCACATTTTTACCCCC
* ** * *
23287372 GAACTTCCAAAAATCATGTTTTTGCCCCG
1 AAACTTCCAAAAATCACATTTTTACCCCC
** * * * *
23287401 AATTTTCCTAAAATGATATTTTTACCCCTA
1 AAACTTCCAAAAATCACATTTTTACCCC-C
*
23287431 AAATTTCCAAAAAT
1 AAACTTCCAAAAAT
23287445 GCATTTTAAT
Statistics
Matches: 273, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
26 1 0.00
27 5 0.02
28 35 0.13
29 139 0.51
30 91 0.33
31 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (29 bp):
AAACTTCCAAAAATCACATTTTTACCCCC
Found at i:23287304 original size:115 final size:116
Alignment explanation
Indices: 23287135--23287394 Score: 369
Period size: 115 Copynumber: 2.2 Consensus size: 116
23287125 ATATTTTTAC
* * * *
23287135 CCCCAAACTTTCCAAAAATTATATTTTTACCCTTAAACTTCCAAAAATTACATTTTTGCCCCCGA
1 CCCCGAAC-TTCCAAAAATTATATTTTTACCCTCAAACTTCCAAAAATCACATTTTTGCCCCCAA
** *
23287200 ACTTTGCAAAAATTACATTTTTGCCCTCAAACTTCCAAAAATCACATTTTTG
65 ACTTCCCAAAAATTACATTTTTACCCTCAAACTTCCAAAAATCACATTTTTG
* *
23287252 CCCCGAACTTCCAAAAATTCTA-TTTTACCCTCGAACTTCCAAAAATCACATTTTTGCCCCCAAA
1 CCCCGAACTTCCAAAAATTATATTTTTACCCTCAAACTTCCAAAAATCACATTTTTGCCCCCAAA
* * *
23287316 CTTCCCAAAAATTCCATTTTTACCCTTAAACTTCCCAAAATCACATTTTTG
66 CTTCCCAAAAATTACATTTTTACCCTCAAACTTCCAAAAATCACATTTTTG
* *
23287367 CCCTCGAACTTCCAAAAATCATGTTTTT
1 CCC-CGAACTTCCAAAAATTATATTTTT
23287395 GCCCCGAATT
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
115 86 0.68
116 29 0.23
117 11 0.09
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (116 bp):
CCCCGAACTTCCAAAAATTATATTTTTACCCTCAAACTTCCAAAAATCACATTTTTGCCCCCAAA
CTTCCCAAAAATTACATTTTTACCCTCAAACTTCCAAAAATCACATTTTTG
Found at i:23287920 original size:97 final size:97
Alignment explanation
Indices: 23287739--23287932 Score: 248
Period size: 97 Copynumber: 2.0 Consensus size: 97
23287729 AAAATATTTA
* * * * *
23287739 AAATCGAGATAATATTCCTTTATTTCGGTTTTTGAAAATTCGTGTCTTAACTTACTAGATGCAAT
1 AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGACGCAAC
23287804 TTTTATTCAAACCAGGATAATCGAATACCCTT
66 TTTTATTCAAACCAGGATAATCGAATACCCTT
* * * *
23287836 AAATCGAGGCAATCTTCCTTTATTTCGGGTTTTGAAAATTTGTGCCTTAACTTACTA-AGCGCGA
1 AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGA-CGCAA
* * *
23287900 CTTTTCTTTAAATC-GTGATAATCGAATACCCTT
65 CTTTTATTCAAACCAG-GATAATCGAATACCCTT
23287933 TTTCAAGGTT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
96 2 0.02
97 81 0.98
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (97 bp):
AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGACGCAAC
TTTTATTCAAACCAGGATAATCGAATACCCTT
Found at i:23299543 original size:78 final size:78
Alignment explanation
Indices: 23299450--23300224 Score: 693
Period size: 78 Copynumber: 10.0 Consensus size: 78
23299440 CAGATTGAAG
* * * * * *
23299450 ATTCGATCTCTTACCCCGAACTTGGGGCAGATCCTCATCAGTAATTCTCTTACCTCTATCATGGG
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTCGAGCCTGGG
* *
23299515 GTAGATTGCAGTC
66 GCAGATTGCAGCC
* * * * * * * * * * * * * *
23299528 GTTTGATCTCTTACCCTGAACTTGGGGTAAATCATCATTAATAATTCTCTTACCCCAATCGTGGA
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTCGAGCCTGGG
* *
23299593 GCAAATTGTAGCC
66 GCAGATTGCAGCC
* * * * * * *
23299606 ATTTGATCTCTTACCCCGAGCCTAGGGCAGATCATCACCAATCAATCTCTTATCC-CGAGCTTGG
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTA-CCTCGAGCCTGG
23299670 GGCAGATTGC-GACC
65 GGCAGATTGCAG-CC
* * * * *
23299684 A-TCTGATCTCTTACCCTGAGCCTGAGGCAGATCATCACCAGTCAATCTCTTACC-CTGAGCCTG
1 ATTC-GATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTC-GAGCCTG
* *
23299747 GCGCAGATTGCAACC
64 GGGCAGATTGCAGCC
* * * * *
23299762 ATTCGATCTTTTACCCCAAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCTCGAGCTTGGG
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTCGAGCCTGGG
*
23299827 GCAGATTGCAACC
66 GCAGATTGCAGCC
* * * * **
23299840 ATTCGATCTTTTACCCTGAGCTTGGGGCAGATCATTATCAGTAAATCTCTTACCCCGAGCCTAAG
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTCGAGCCTGGG
*
23299905 GCAGATTGTAGCC
66 GCAGATTGCAGCC
* * * *
23299918 ATTCGATCTTTTATCCCGAGCTTGGGGCAGATCACCATCAGTAAATCTCTTACCTCGAGCCT-GC
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTCGAGCCTGGG
23299982 GCAGATTGCAGCC
66 GCAGATTGCAGCC
* * ** * * * *
23299995 ATTCGATCTTTTACCCCGAGCCTGATGCAGATCACCATCAATAAATCTCTTACCCCGAGCTTGGG
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTCGAGCCTGGG
*
23300060 GCAGATTGTAGCC
66 GCAGATTGCAGCC
* ** * * * *** * * *
23300073 ATTCGATCTTTTACCCCGAGCTTGGGATAGATTACCATTAACCAATCACTCACC-CTGAGCTTGG
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTC-GAGCCTGG
* *
23300137 AGCAGATTGCAACC
65 GGCAGATTGCAGCC
* * * *
23300151 ATTCGATCTCTGACCCCGAGCTTGGGGCAGATTATCATCAGCAAATCTCTTA-CTCCGAACCTGG
1 ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCT-CGAGCCTGG
*
23300215 AGCAG-TTGCA
65 GGCAGATTGCA
23300225 ACCCTCTCAC
Statistics
Matches: 580, Mismatches: 106, Indels: 23
0.82 0.15 0.03
Matches are distributed among these distances:
77 79 0.14
78 495 0.85
79 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (78 bp):
ATTCGATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAAATCTCTTACCTCGAGCCTGGG
GCAGATTGCAGCC
Found at i:23300087 original size:39 final size:38
Alignment explanation
Indices: 23299604--23300183 Score: 362
Period size: 39 Copynumber: 14.9 Consensus size: 38
23299594 CAAATTGTAG
* * *
23299604 CCATTTGATCTCTTACCCCGAGCCTAGGGCAGATCAT-CA
1 CCATTCGATCTCTTACCCCGAGCTTGGGGCAGAT--TGCA
* * *
23299643 CCAATCAATCTCTTATCCCGAGCTTGGGGCAGATTGCGA
1 CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGC-A
* * *
23299682 CCA-TCTGATCTCTTACCCTGAGCCTGAGGCAGATCAT-CA
1 CCATTC-GATCTCTTACCCCGAGCTTGGGGCAGAT--TGCA
* * * * *
23299721 CCAGTCAATCTCTTACCCTGAGCCTGGCGCAGATTGCAA
1 CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGC-A
* *
23299760 CCATTCGATCTTTTACCCCAAGCTTGGGGCAGA-T-CA
1 CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGCA
*
23299796 CCA-TCAGCAAATCTCTTACCTCGAGCTTGGGGCAGATTGCAA
1 CCATTC-G---ATCTCTTACCCCGAGCTTGGGGCAGATTGC-A
* * *
23299838 CCATTCGATCTTTTACCCTGAGCTTGGGGCAGATCAT-TA
1 CCATTCGATCTCTTACCCCGAGCTTGGGGCAGAT--TGCA
* * ** * ** *
23299877 TCAGTAAATCTCTTACCCCGAGCCTAAGGCAGATTGTA
1 CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGCA
* *
23299915 GCCATTCGATCTTTTATCCCGAGCTTGGGGCAGA-T-CA
1 -CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGCA
* * *
23299952 CCA-TCAGTAAATCTCTTACCTCGAGCCT-GCGCAGATTGCA
1 CCATTC-G---ATCTCTTACCCCGAGCTTGGGGCAGATTGCA
* * **
23299992 GCCATTCGATCTTTTACCCCGAGCCTGATGCAGA-T-CA
1 -CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGCA
** *
23300029 CCATCAATAAATCTCTTACCCCGAGCTTGGGGCAGATTGTA
1 CCAT---TCGATCTCTTACCCCGAGCTTGGGGCAGATTGCA
* **
23300070 GCCATTCGATCTTTTACCCCGAGCTTGGGATAGATT--A
1 -CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGCA
* * * * *
23300107 CCATTAACCAATCACTCACCCTGAGCTTGGAGCAGATTGCAA
1 CCATT---CGATCTCTTACCCCGAGCTTGGGGCAGATTGC-A
*
23300149 CCATTCGATCTCTGACCCCGAGCTTGGGGCAGATT
1 CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATT
23300184 ATCATCAGCA
Statistics
Matches: 419, Mismatches: 81, Indels: 82
0.72 0.14 0.14
Matches are distributed among these distances:
35 4 0.01
36 18 0.04
37 8 0.02
38 31 0.07
39 324 0.77
40 7 0.02
41 8 0.02
42 17 0.04
43 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (38 bp):
CCATTCGATCTCTTACCCCGAGCTTGGGGCAGATTGCA
Found at i:23300648 original size:18 final size:17
Alignment explanation
Indices: 23300615--23300691 Score: 100
Period size: 17 Copynumber: 4.5 Consensus size: 17
23300605 AAACCCAGTT
*
23300615 TTTAGATTTATTTTAAG
1 TTTAAATTTATTTTAAG
* *
23300632 TTTAAATTTGTTTTTAAA
1 TTTAAATTT-ATTTTAAG
23300650 TTTAAATTTATTTTAAG
1 TTTAAATTTATTTTAAG
* *
23300667 TTTAAATTTATTCTAAA
1 TTTAAATTTATTTTAAG
23300684 TTTAAATT
1 TTTAAATT
23300692 AATAATGTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
17 37 0.71
18 15 0.29
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.58
Consensus pattern (17 bp):
TTTAAATTTATTTTAAG
Found at i:23300666 original size:35 final size:34
Alignment explanation
Indices: 23300615--23300691 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 34
23300605 AAACCCAGTT
* * *
23300615 TTTAGATTTATTTTAAGTTTAAATTTGTTTTTAAA
1 TTTAAATTTATTTTAAGTTTAAATTT-ATTCTAAA
23300650 TTTAAATTTATTTTAAGTTTAAATTTATTCTAAA
1 TTTAAATTTATTTTAAGTTTAAATTTATTCTAAA
23300684 TTTAAATT
1 TTTAAATT
23300692 AATAATGTCC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 14 0.36
35 25 0.64
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.58
Consensus pattern (34 bp):
TTTAAATTTATTTTAAGTTTAAATTTATTCTAAA
Found at i:23301630 original size:14 final size:14
Alignment explanation
Indices: 23301611--23301644 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
23301601 ACATATCAAT
*
23301611 AATAAATGAAAATC
1 AATAAATAAAAATC
*
23301625 AATAAATAAAAATG
1 AATAAATAAAAATC
23301639 AATAAA
1 AATAAA
23301645 AAATAACGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.21
Consensus pattern (14 bp):
AATAAATAAAAATC
Found at i:23302602 original size:30 final size:30
Alignment explanation
Indices: 23302568--23302810 Score: 227
Period size: 29 Copynumber: 8.2 Consensus size: 30
23302558 TATACTTCAT
*
23302568 AAAAATCACATTTTTACCCCTAAACTTTCC
1 AAAAATCACATTTTTACCCCTGAACTTTCC
* *
23302598 AAAAATCACATTTTTTCCCCCGAAC-TTCC
1 AAAAATCACATTTTTACCCCTGAACTTTCC
*
23302627 AAAAATTC-TATTTTTA-CCCTCGAAC-TTCC
1 AAAAA-TCACATTTTTACCCCT-GAACTTTCC
* *
23302656 AAAAATCACATTTTT-GCCCTCGAACTTCCC
1 AAAAATCACATTTTTACCCCT-GAACTTTCC
*
23302686 AAAAATTC-CATTTTTACTCCTGAAC-TTCC
1 AAAAA-TCACATTTTTACCCCTGAACTTTCC
*
23302715 CAAAATCACATTTTTTA-CCCTCGAACTTT-C
1 AAAAATCACA-TTTTTACCCCT-GAACTTTCC
* * *
23302745 AAAAATCACCTTTTTGCCCC-GAATTTTCC
1 AAAAATCACATTTTTACCCCTGAACTTTCC
* * *
23302774 TAAAATGACATTTTTACCCCTAAAACTTTCC
1 AAAAATCACATTTTTACCCCT-GAACTTTCC
23302805 AAAAAT
1 AAAAAT
23302811 GCATTTTAAC
Statistics
Matches: 174, Mismatches: 24, Indels: 29
0.77 0.11 0.13
Matches are distributed among these distances:
28 13 0.07
29 77 0.44
30 65 0.37
31 19 0.11
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (30 bp):
AAAAATCACATTTTTACCCCTGAACTTTCC
Found at i:23302653 original size:59 final size:58
Alignment explanation
Indices: 23302576--23302837 Score: 232
Period size: 59 Copynumber: 4.4 Consensus size: 58
23302566 ATAAAAATCA
*
23302576 CATTTTTACCC-CTAAACTTTCCAAAAATCACATTTTTTCCCCCGAACTTCCAAAAATT
1 CATTTTTACCCTC-GAACTTTCCAAAAATCACATTTTTTCCCCCGAACTTCCAAAAATT
* *
23302634 CTATTTTTACCCTCGAAC-TTCCAAAAATCACATTTTTGCCCTCGAACTTCCCAAAAATT
1 C-ATTTTTACCCTCGAACTTTCCAAAAATCACATTTTTTCCCCCGAACTT-CCAAAAATT
* * *
23302693 CCATTTTTACTCCT-GAAC-TTCCCAAAATCACATTTTTTACCCTCGAACTTTCAAAAA-T
1 -CATTTTTAC-CCTCGAACTTTCCAAAAATCACATTTTTT-CCCCCGAACTTCCAAAAATT
* * * * * ** *
23302751 CACCTTTTTGCCC-CGAATTTTCCTAAAATGACATTTTTACCCCTAAAACTTTCCAAAAATG
1 CA--TTTTTACCCTCGAACTTTCCAAAAATCACATTTTTTCCCC-CGAAC-TTCCAAAAATT
* *
23302812 CATTTTAACCCTC-AGACTCTCCAAAA
1 CATTTTTACCCTCGA-ACTTTCCAAAA
23302838 CTTCATTTTT
Statistics
Matches: 168, Mismatches: 21, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
57 2 0.01
58 39 0.23
59 92 0.55
60 33 0.20
61 2 0.01
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (58 bp):
CATTTTTACCCTCGAACTTTCCAAAAATCACATTTTTTCCCCCGAACTTCCAAAAATT
Found at i:23302818 original size:29 final size:29
Alignment explanation
Indices: 23302769--23302846 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
23302759 TGCCCCGAAT
* *
23302769 TTTCCTAAAATGACATTTTTACCCCTAAAAC
1 TTTCCAAAAATG-CA-TTTTAACCCTAAAAC
* *
23302800 TTTCCAAAAATGCATTTTAACCCTCAGAC
1 TTTCCAAAAATGCATTTTAACCCTAAAAC
* * *
23302829 TCTCCAAAACTTCATTTT
1 TTTCCAAAAATGCATTTT
23302847 TTGACCCCAT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 27 0.68
30 2 0.05
31 11 0.28
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (29 bp):
TTTCCAAAAATGCATTTTAACCCTAAAAC
Found at i:23303270 original size:97 final size:97
Alignment explanation
Indices: 23303104--23303297 Score: 273
Period size: 97 Copynumber: 2.0 Consensus size: 97
23303094 AAAATATTTA
* ** *
23303104 AAATCGAGGTAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGCATGAT
1 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGCACAAC
* **
23303169 TTTTCT-TCAACTCGGGATAATCGAATACCCTT
66 TTTTCTGT-AAATCAAGATAATCGAATACCCTT
* * * *
23303201 AAATCGAGGCAATATTCTTTTATTTCGGGTTTTGAAAATTTGTGCCTTAATTTACTAGGCGCAAC
1 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGCACAAC
23303266 TTTTCTGTAAATCAAGATAATCGAATACCCTT
66 TTTTCTGTAAATCAAGATAATCGAATACCCTT
23303298 TTTAAGGTTT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
97 84 0.99
98 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGCACAAC
TTTTCTGTAAATCAAGATAATCGAATACCCTT
Found at i:23306107 original size:29 final size:30
Alignment explanation
Indices: 23306035--23306157 Score: 151
Period size: 30 Copynumber: 4.1 Consensus size: 30
23306025 CATTAAAACA
* * *
23306035 GGGTCAAATTTGAATTTATGGAAAGTTCAA
1 GGGTCAAATTTGAATTTTTGGAAAGTTTAG
* * *
23306065 GGGTTAGATTTGAATTTTTAGAAAGTTTAG
1 GGGTCAAATTTGAATTTTTGGAAAGTTTAG
23306095 GGGTCAAA-TTGAATTTTTGGAAAGTTTTA-
1 GGGTCAAATTTGAATTTTTGGAAAG-TTTAG
* *
23306124 GGGTCAAATTTAAATTTTTGGAAAATTTAG
1 GGGTCAAATTTGAATTTTTGGAAAGTTTAG
23306154 GGGT
1 GGGT
23306158 AAAACATAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
29 27 0.34
30 52 0.66
ACGTcount: A:0.33, C:0.03, G:0.25, T:0.39
Consensus pattern (30 bp):
GGGTCAAATTTGAATTTTTGGAAAGTTTAG
Found at i:23306140 original size:59 final size:60
Alignment explanation
Indices: 23306035--23306157 Score: 167
Period size: 59 Copynumber: 2.1 Consensus size: 60
23306025 CATTAAAACA
* * * *
23306035 GGGTCAAATTTGAATTTATGGAAAGTTCAAGGGTTAGATTTGAATTTTTAGAAAGTTTAG
1 GGGTCAAATTTGAATTTATGGAAAGTTCAAGGGTCAAATTTAAATTTTTAGAAAATTTAG
* ** *
23306095 GGGTCAAA-TTGAATTTTTGGAAAGTTTTAGGGTCAAATTTAAATTTTTGGAAAATTTAG
1 GGGTCAAATTTGAATTTATGGAAAGTTCAAGGGTCAAATTTAAATTTTTAGAAAATTTAG
23306154 GGGT
1 GGGT
23306158 AAAACATAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 47 0.85
60 8 0.15
ACGTcount: A:0.33, C:0.03, G:0.25, T:0.39
Consensus pattern (60 bp):
GGGTCAAATTTGAATTTATGGAAAGTTCAAGGGTCAAATTTAAATTTTTAGAAAATTTAG
Found at i:23306169 original size:59 final size:59
Alignment explanation
Indices: 23306045--23306170 Score: 146
Period size: 59 Copynumber: 2.1 Consensus size: 59
23306035 GGGTCAAATT
* * * * * * *
23306045 TGAATTTATGGAAAGTTCAAGGGTTAGATTTGAATTTTTAGAAAGTTTAGGGGTCAAAT
1 TGAATTTTTGGAAAGTTCAAGGGTCAAATTTAAATTTTTAGAAAATTTAGGGGTAAAAA
** *
23306104 TGAATTTTTGGAAAGTTTTAGGGTCAAATTTAAATTTTTGGAAAATTTAGGGGTAAAACA
1 TGAATTTTTGGAAAGTTCAAGGGTCAAATTTAAATTTTTAGAAAATTTAGGGGTAAAA-A
23306164 T-AATTTT
1 TGAATTTT
23306171 AAAATAAAGC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 55 0.98
60 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.40
Consensus pattern (59 bp):
TGAATTTTTGGAAAGTTCAAGGGTCAAATTTAAATTTTTAGAAAATTTAGGGGTAAAAA
Found at i:23306170 original size:29 final size:29
Alignment explanation
Indices: 23306077--23306157 Score: 101
Period size: 29 Copynumber: 2.8 Consensus size: 29
23306067 GTTAGATTTG
* * *
23306077 AATTTTTAGAAAGTTTAGGGGTCAAATTG
1 AATTTTTGGAAAATTTAGGGGTCAAATTA
*
23306106 AATTTTTGGAAAGTTTTA-GGGTCAAATTTA
1 AATTTTTGGAAA-ATTTAGGGGTCAAA-TTA
23306136 AATTTTTGGAAAATTTAGGGGT
1 AATTTTTGGAAAATTTAGGGGT
23306158 AAAACATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
29 23 0.51
30 22 0.49
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.41
Consensus pattern (29 bp):
AATTTTTGGAAAATTTAGGGGTCAAATTA
Found at i:23307426 original size:59 final size:61
Alignment explanation
Indices: 23307319--23307454 Score: 195
Period size: 59 Copynumber: 2.2 Consensus size: 61
23307309 ATCTATATTC
* * *
23307319 ATAAAATAAAAAAACAAAATTAATATTATTTAACATTTATTTATTTATATTCATACAATAATAA
1 ATAAAATAATAAAACAAAATTAATATTATTT---ATATATTTATTTATATTCATAAAATAATAA
*
23307383 AT-AAATAATAAAACAAAATTAATATTATTT-TATATTTATTTATATTCATAAAATGATAA
1 ATAAAATAATAAAACAAAATTAATATTATTTATATATTTATTTATATTCATAAAATAATAA
23307442 ATAAAATAATAAA
1 ATAAAATAATAAA
23307455 GAAATAAGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
59 28 0.42
60 10 0.15
63 27 0.40
64 2 0.03
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (61 bp):
ATAAAATAATAAAACAAAATTAATATTATTTATATATTTATTTATATTCATAAAATAATAA
Found at i:23308133 original size:40 final size:39
Alignment explanation
Indices: 23308068--23308321 Score: 260
Period size: 39 Copynumber: 6.5 Consensus size: 39
23308058 TATAGCTTAA
* * *
23308068 GGGGTAAAAGATAGGATCGCTTCAATTTGCCCCATGGTC
1 GGGGTAAAAGATTGGATGGCTTCAATCTGCCCCATGGTC
* * * * *
23308107 GGGGTAAGAGATCGGATGGTCTTCAATCTGCCTC-TAGTT
1 GGGGTAAAAGATTGGATGG-CTTCAATCTGCCCCATGGTC
* * * *
23308146 AGGGTAAAAGATTGGGTTGCTTCAATCTACCCCATGGTC
1 GGGGTAAAAGATTGGATGGCTTCAATCTGCCCCATGGTC
* * * ** *
23308185 AGGGTAAAATATTGGATGGTCTTCAATTTGCCCTC-TAATT
1 GGGGTAAAAGATTGGATGG-CTTCAATCTGCCC-CATGGTC
* *
23308225 AGGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTC
1 GGGGTAAAAGATTGGATGGCTTCAATCTGCCCCATGGTC
*
23308264 GGGGTAAAAGATTGGATGGTCTTCAATCTTCCCCATGGTC
1 GGGGTAAAAGATTGGATGG-CTTCAATCTGCCCCATGGTC
*
23308304 GGGGCAAAAGATTGGATG
1 GGGGTAAAAGATTGGATG
23308322 TGATGACTTC
Statistics
Matches: 175, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
38 13 0.07
39 83 0.47
40 78 0.45
41 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (39 bp):
GGGGTAAAAGATTGGATGGCTTCAATCTGCCCCATGGTC
Found at i:23308249 original size:79 final size:78
Alignment explanation
Indices: 23308069--23308292 Score: 340
Period size: 79 Copynumber: 2.9 Consensus size: 78
23308059 ATAGCTTAAG
* * * * *
23308069 GGGTAAAAGATAGGATCGCTTCAATTTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
*
23308134 CTGCCTCTAGTTA
66 CTGCCTCTAATTA
* * * *
23308147 GGGTAAAAGATTGGGTTGCTTCAATCTACCCCATGGTCAGGGTAAAATATTGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
*
23308212 TTGCCCTCTAATTA
66 CTG-CCTCTAATTA
23308226 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
23308291 CT
66 CT
23308293 TCCCCATGGT
Statistics
Matches: 129, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
78 58 0.45
79 71 0.55
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (78 bp):
GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
CTGCCTCTAATTA
Found at i:23308313 original size:79 final size:78
Alignment explanation
Indices: 23308069--23308320 Score: 326
Period size: 79 Copynumber: 3.2 Consensus size: 78
23308059 ATAGCTTAAG
* * * * *
23308069 GGGTAAAAGATAGGATCGCTTCAATTTGCCCCATGGTCGGGGTAAGAGATCGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
* *
23308134 CTGCCTCTAGTTA
66 CTTCCCCTAGTTA
* * * *
23308147 GGGTAAAAGATTGGGTTGCTTCAATCTACCCCATGGTCAGGGTAAAATATTGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
*
23308212 -TTGCCCTCTAATTA
66 CTT-CCC-CTAGTTA
23308226 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
1 GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
* **
23308291 CTTCCCCATGGTCG
66 CTTCCCC-TAGTTA
*
23308305 GGGCAAAAGATTGGAT
1 GGGTAAAAGATTGGAT
23308321 GTGATGACTT
Statistics
Matches: 149, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
77 1 0.01
78 59 0.40
79 87 0.58
80 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (78 bp):
GGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTCGGGGTAAAAGATTGGATGGTCTTCAAT
CTTCCCCTAGTTA
Found at i:23319653 original size:4 final size:4
Alignment explanation
Indices: 23319644--23319691 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
23319634 ATAAATCGAG
* * * * *
23319644 TAAA TAAA TAAC TGAA TAAA TGAA TAAA TAAA GAAA CAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
23319692 ATAACATACA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:23319854 original size:30 final size:30
Alignment explanation
Indices: 23319818--23319882 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
23319808 GTCAAATTCA
*
23319818 AGGGTCAAATTTGAATTTTTAGAAAGTTCG
1 AGGGTCAAATTTGAATTTTTAAAAAGTTCG
23319848 AGGGTCAAATTTGAATTTTTAAAAAGTTCG
1 AGGGTCAAATTTGAATTTTTAAAAAGTTCG
*
23319878 TGGGT
1 AGGGT
23319883 AAAACATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (30 bp):
AGGGTCAAATTTGAATTTTTAAAAAGTTCG
Found at i:23319894 original size:29 final size:30
Alignment explanation
Indices: 23319829--23319899 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
23319819 GGGTCAAATT
* * **
23319829 TGAATTTTTAGAAAGTTCGAGGGTCAAATT
1 TGAATTTTTAAAAAGTTCGAGGGTAAAACA
*
23319859 TGAATTTTTAAAAAGTTCGTGGGTAAAACA
1 TGAATTTTTAAAAAGTTCGAGGGTAAAACA
23319889 T-AA-TTTTAAAA
1 TGAATTTTTAAAA
23319900 TAAAACAGAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 8 0.22
29 2 0.06
30 26 0.72
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (30 bp):
TGAATTTTTAAAAAGTTCGAGGGTAAAACA
Found at i:23321133 original size:16 final size:16
Alignment explanation
Indices: 23321112--23321147 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
23321102 ATTTATATTC
* *
23321112 ATAAAATGATAAATAA
1 ATAAAATAATAAAAAA
23321128 ATAAAATAATAAAAAA
1 ATAAAATAATAAAAAA
23321144 ATAA
1 ATAA
23321148 GAAAAATGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (16 bp):
ATAAAATAATAAAAAA
Found at i:23321145 original size:59 final size:58
Alignment explanation
Indices: 23320972--23321145 Score: 237
Period size: 59 Copynumber: 2.9 Consensus size: 58
23320962 AATTTGAGTT
* *
23320972 TATTATTTATTTATCTATATTCATAAAATAATAAATAAAT-AATAA-AACAAAATTAA
1 TATTATTTATTTATTTATATTCATAAAATAATAAATAAATAAATAATAAAAAAATTAA
*
23321028 TATTATTTTACATTTATTTATATTCATACAATAATAAAT-AATAAATAATAAAATAAAATTAA
1 TATTA-TTT--ATTTATTTATATTCATAAAATAATAAATAAATAAATAAT-AAA-AAAATTAA
*
23321090 TATTATTTATTTATTTATATTCATAAAATGATAAATAAATAAAATAATAAAAAAAT
1 TATTATTTATTTATTTATATTCATAAAATAATAAATAAAT-AAATAATAAAAAAAT
23321146 AAGAAAAATG
Statistics
Matches: 104, Mismatches: 5, Indels: 15
0.84 0.04 0.12
Matches are distributed among these distances:
56 5 0.05
57 3 0.03
58 3 0.03
59 62 0.60
60 6 0.06
61 12 0.12
62 13 0.12
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.41
Consensus pattern (58 bp):
TATTATTTATTTATTTATATTCATAAAATAATAAATAAATAAATAATAAAAAAATTAA
Found at i:23323123 original size:25 final size:25
Alignment explanation
Indices: 23323095--23323149 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
23323085 ATTTAACCAT
* * * *
23323095 TTTTTATTTTTATTTAATATTTTTA
1 TTTTTAATTTAATTTAATATTCTAA
*
23323120 TTTTTAATTTAATTTTATATTCTAA
1 TTTTTAATTTAATTTAATATTCTAA
23323145 TTTTT
1 TTTTT
23323150 CGTTTGTTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (25 bp):
TTTTTAATTTAATTTAATATTCTAA
Found at i:23323140 original size:19 final size:18
Alignment explanation
Indices: 23323093--23323140 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
23323083 TAATTTAACC
23323093 ATTTTTTATTTTTATTTA
1 ATTTTTTATTTTTATTTA
23323111 ATATTTTTATTTTTAATTTA
1 AT-TTTTTATTTTT-ATTTA
*
23323131 ATTTTATATT
1 ATTTTTTATT
23323141 CTAATTTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 2 0.07
19 18 0.67
20 7 0.26
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
ATTTTTTATTTTTATTTA
Found at i:23327490 original size:20 final size:20
Alignment explanation
Indices: 23327452--23327495 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
23327442 ATTTTCCGTA
23327452 ATTTAAATAATTTATATTTAT
1 ATTTAAATAATTTATATTT-T
23327473 ATTT-AATAATTT-TAATTTT
1 ATTTAAATAATTTAT-ATTTT
23327492 ATTT
1 ATTT
23327496 TTTTTAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.27
20 12 0.55
21 4 0.18
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTAAATAATTTATATTTT
Found at i:23328072 original size:19 final size:21
Alignment explanation
Indices: 23328039--23328079 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
23328029 TACACTTTAA
*
23328039 TTTTTAATAGTTTTTATAATT
1 TTTTTAATAGTTTTTAAAATT
23328060 TTTTTAAT-G-TTTTAAAATT
1 TTTTTAATAGTTTTTAAAATT
23328079 T
1 T
23328080 AAAAGTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 1 0.05
21 8 0.42
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (21 bp):
TTTTTAATAGTTTTTAAAATT
Found at i:23330041 original size:13 final size:13
Alignment explanation
Indices: 23330023--23330047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23330013 CAATAATCTA
23330023 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
23330036 AAAAAAAAAAAA
1 AAAAAAAAAAAA
23330048 CCCTTCAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.96, C:0.00, G:0.04, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:23336573 original size:81 final size:82
Alignment explanation
Indices: 23336422--23336576 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 82
23336412 TGTCCTTAGT
** * *
23336422 ACTGACATTCTGAGCGAGCTTGAGGCCTGTTGGACACGTGTCTAGATTGCCTGCAGAGCACGCGA
1 ACTGACATTCTGAGCGAGCTTGAGGCCTGCCGAACACGTGTCTAGATTGCCTACAGAGCACGCGA
23336487 TCCTTTCTGTTTTTGGG
66 TCCTTTCTGTTTTTGGG
* *
23336504 ACTGACATTCTGAGC-AGGCTTCGA-GCCTGCCGAACATGT-TCTAGGTTGCCTAC-GAAGCACG
1 ACTGACATTCTGAGCGA-GCTT-GAGGCCTGCCGAACACGTGTCTAGATTGCCTACAG-AGCACG
*
23336565 CGGTCCTTTCTG
63 CGATCCTTTCTG
23336577 CGAGCTCCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
80 1 0.02
81 30 0.48
82 30 0.48
83 2 0.03
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (82 bp):
ACTGACATTCTGAGCGAGCTTGAGGCCTGCCGAACACGTGTCTAGATTGCCTACAGAGCACGCGA
TCCTTTCTGTTTTTGGG
Found at i:23347000 original size:22 final size:22
Alignment explanation
Indices: 23346969--23347011 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
23346959 TTTCTTAAAT
23346969 TTAGGATTTAGTTTTTTCTTTC
1 TTAGGATTTAGTTTTTTCTTTC
*
23346991 TTAGGTTTTAGTTTTTTCTTT
1 TTAGGATTTAGTTTTTTCTTT
23347012 TCATTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.12, C:0.07, G:0.14, T:0.67
Consensus pattern (22 bp):
TTAGGATTTAGTTTTTTCTTTC
Found at i:23347958 original size:19 final size:19
Alignment explanation
Indices: 23347908--23347959 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
23347898 CTTGATAAAC
*
23347908 GTCACATCAATCCTGAGTT
1 GTCACATCAATACTGAGTT
* *
23347927 GTC-CTTTAATACTGAGTT
1 GTCACATCAATACTGAGTT
23347945 GTCACATCAATACTG
1 GTCACATCAATACTG
23347960 TCGTGGACTC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (19 bp):
GTCACATCAATACTGAGTT
Found at i:23351406 original size:21 final size:22
Alignment explanation
Indices: 23351354--23351407 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
23351344 CTTATGATAG
23351354 TTCTACCGATACAAGTAAGACA
1 TTCTACCGATACAAGTAAGACA
* *
23351376 TT-TACTGATACAAGTCATG-C-
1 TTCTACCGATACAAGT-AAGACA
23351396 TTCTACCGATAC
1 TTCTACCGATAC
23351408 TAGAAACTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 2 0.07
21 21 0.78
22 4 0.15
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (22 bp):
TTCTACCGATACAAGTAAGACA
Found at i:23351715 original size:19 final size:19
Alignment explanation
Indices: 23351691--23351728 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
23351681 ACATTGTACA
23351691 TAGTTTCAAAACATTTCAT
1 TAGTTTCAAAACATTTCAT
23351710 TAGTTTCAAAACATTTCAT
1 TAGTTTCAAAACATTTCAT
23351729 ACATCTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (19 bp):
TAGTTTCAAAACATTTCAT
Found at i:23355060 original size:20 final size:20
Alignment explanation
Indices: 23355018--23355061 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
23355008 CATTTTATCA
** *
23355018 TATTTTTTTGTTATTATTGT
1 TATTTTTTTACTATCATTGT
*
23355038 TATTTTTTTACTATCATTTT
1 TATTTTTTTACTATCATTGT
23355058 TATT
1 TATT
23355062 ATTGTGTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.73
Consensus pattern (20 bp):
TATTTTTTTACTATCATTGT
Found at i:23355951 original size:146 final size:144
Alignment explanation
Indices: 23355675--23355952 Score: 403
Period size: 146 Copynumber: 1.9 Consensus size: 144
23355665 TACCAAAAAT
*
23355675 CATCATTTTAGTAATTTTAACATTTTATTGAAATGAATAAATTTCGAGGTGATCCAATCACACCT
1 CATCATTTTAGTAATTTTAACATTTTATTAAAATGAATAAATTTCGAGGTGATCCAATCACACCT
* * * *
23355740 AGTTAAAAAGGATTGGTGACAACTCCATTTTCATTTTTACAATAAAAAGTAGGGACTCGAAAAAA
66 AATTAAAAAGGATTGGTGACAACTCAATTTTCATTTTTAAAATAAAAAGTAGAGACTC--AAAAA
23355805 AGGTTTGGACAACTAC
129 AGGTTTGGACAACTAC
*
23355821 CATCATTTTAGTAATTTTAACATTTTATTAAAATGAATAAATTTTGAGGTGATCCAATCACACCT
1 CATCATTTTAGTAATTTTAACATTTTATTAAAATGAATAAATTTCGAGGTGATCCAATCACACCT
* * * ** *
23355886 AATTAAAAAAGGATTGGTGGCGATTCAATTTTTGTTTTTTTAAAATAAAAAGTCGAGACTCAAAA
66 AATT-AAAAAGGATTGGTGACAACTCAA-TTTT-CATTTTTAAAATAAAAAGTAGAGACTCAAAA
23355951 AA
128 AA
23355953 AGGGTTTCGA
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
146 66 0.56
147 25 0.21
148 4 0.03
149 22 0.19
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (144 bp):
CATCATTTTAGTAATTTTAACATTTTATTAAAATGAATAAATTTCGAGGTGATCCAATCACACCT
AATTAAAAAGGATTGGTGACAACTCAATTTTCATTTTTAAAATAAAAAGTAGAGACTCAAAAAAG
GTTTGGACAACTAC
Found at i:23358862 original size:103 final size:105
Alignment explanation
Indices: 23358655--23358889 Score: 271
Period size: 103 Copynumber: 2.3 Consensus size: 105
23358645 GTTACGAGTC
* * * * *
23358655 CTCGACGGCTTGTGTGAGCAACATCGTGAGTCAGGAAATGAGTAAAGAATCCAAGAATGGATTAT
1 CTCGACAGCTCGTGTGAGCAGCATCGTGAGTCAGAAAAAGAGTAAAGAATCCAAGAATGGATTAT
* * * * *
23358720 AAGCCCTACGATGGCTGAGATTTATGCATAAGTGCATATT
66 AAGCCCTAAGATGACTGAGATTTATACATAAATGAATATT
** *
23358760 CTCGACAGCTCGTGTGAGCAGCATCGTGAGTC-GAAAAAGAG-ATATTAATCCTA-AATGGATTA
1 CTCGACAGCTCGTGTGAGCAGCATCGTGAGTCAGAAAAAGAGTA-AAGAATCCAAGAATGGATTA
* **
23358822 TAGGCCCTAAGATGACT-AGGATTTATATTTAAATGAATATT
65 TAAGCCCTAAGATGACTGA-GATTTATACATAAATGAATATT
*
23358863 CTCGATAGCTCGTGTGAGCAGCATCGT
1 CTCGACAGCTCGTGTGAGCAGCATCGT
23358890 TAGGGGACAG
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
102 1 0.01
103 67 0.60
104 14 0.13
105 29 0.26
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (105 bp):
CTCGACAGCTCGTGTGAGCAGCATCGTGAGTCAGAAAAAGAGTAAAGAATCCAAGAATGGATTAT
AAGCCCTAAGATGACTGAGATTTATACATAAATGAATATT
Found at i:23378628 original size:17 final size:17
Alignment explanation
Indices: 23378606--23378655 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 17
23378596 ATAGTTTGCA
*
23378606 TGCATTTTTATTGTCAT
1 TGCATTTTTTTTGTCAT
*
23378623 TGCATTTTCATTTTTTCAT
1 TGCATTTT--TTTTGTCAT
23378642 TGCATTTTTTTTGT
1 TGCATTTTTTTTGT
23378656 TAATTTAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 13 0.46
19 15 0.54
ACGTcount: A:0.14, C:0.12, G:0.10, T:0.64
Consensus pattern (17 bp):
TGCATTTTTTTTGTCAT
Found at i:23379255 original size:13 final size:14
Alignment explanation
Indices: 23379224--23379270 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
23379214 TCAGTCACTT
*
23379224 GAAAAAGGAAAATGA
1 GAAAAA-GAAAAGGA
23379239 GAAAAAG-AAAGGA
1 GAAAAAGAAAAGGA
*
23379252 G-AAAAGAAAAGAA
1 GAAAAAGAAAAGGA
23379265 GAAAAA
1 GAAAAA
23379271 ATAGTTTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
12 5 0.18
13 12 0.43
14 5 0.18
15 6 0.21
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (14 bp):
GAAAAAGAAAAGGA
Found at i:23380233 original size:30 final size:30
Alignment explanation
Indices: 23380091--23380237 Score: 120
Period size: 30 Copynumber: 4.9 Consensus size: 30
23380081 TTTAAGGCTC
* * * *
23380091 AATTCTTTGAAAAGTTTTTGGGTTAAATTCA
1 AATT-TTTGGAAAGTTTTGGGGTCAAATTTA
* * * *
23380122 AATTTTTGGTAAGTTTAGGGGTTAAATTTG
1 AATTTTTGGAAAGTTTTGGGGTCAAATTTA
* * *
23380152 AATTTTTGGAAAG-TTTAGGGTCACATTTG
1 AATTTTTGGAAAGTTTTGGGGTCAAATTTA
* *
23380181 AATTTTTGGAACA--TTCGAGGGTCAAAGTTA
1 AATTTTTGGAA-AGTTTTG-GGGTCAAATTTA
*
23380211 AATTTTTTGAAAGTTTTGGGGTCAAAT
1 AATTTTTGGAAAGTTTTGGGGTCAAAT
23380238 CATAATTTTA
Statistics
Matches: 93, Mismatches: 19, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
29 26 0.28
30 60 0.65
31 7 0.08
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.42
Consensus pattern (30 bp):
AATTTTTGGAAAGTTTTGGGGTCAAATTTA
Found at i:23382075 original size:40 final size:40
Alignment explanation
Indices: 23382023--23382237 Score: 182
Period size: 40 Copynumber: 5.4 Consensus size: 40
23382013 ATAACTTTAG
*
23382023 GGGTAAAAGATTGGATGGTCTTCAATTTTCCCTATGGTTA
1 GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGGTTA
* * * * *
23382063 GGGTAAAAGATTGGGTTGT-TTCAATCTGCCCCATGGTCA
1 GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGGTTA
** * *
23382102 GGGTAAAAGATTAAATGGTCTTCAATTTGCCCTTTGATTA
1 GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGGTTA
* * * * * * **
23382142 GGGTAAAATACTAGATTG-CTTCAATCTGCCCCATGGTCG
1 GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGGTTA
* * * * * * * *
23382181 GGGTAAGAGATCGGATGATCTTTAATCTGTCCTCTGATTA
1 GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGGTTA
23382221 GGGTAAAAGATTGGATG
1 GGGTAAAAGATTGGATG
23382238 ATATCATCTG
Statistics
Matches: 132, Mismatches: 41, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
39 57 0.43
40 75 0.57
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (40 bp):
GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGGTTA
Found at i:23382165 original size:79 final size:79
Alignment explanation
Indices: 23382023--23382275 Score: 258
Period size: 79 Copynumber: 3.2 Consensus size: 79
23382013 ATAACTTTAG
* * * * * *
23382023 GGGTAAAAGATTGGATGGTCTTCAATTTTCCCTATGGTTAGGGTAAAAGATTGGGTTGTTTCAAT
1 GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGATTAGGGTAAAAGACTAGATTGCTTCAAT
23382088 CTGCCCCATGGTCA
66 CTGCCCCATGGTCA
** * *
23382102 GGGTAAAAGATTAAATGGTCTTCAATTTGCCCTTTGATTAGGGTAAAATACTAGATTGCTTCAAT
1 GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGATTAGGGTAAAAGACTAGATTGCTTCAAT
*
23382167 CTGCCCCATGGTCG
66 CTGCCCCATGGTCA
* * * * * * * * * *
23382181 GGGTAAGAGATCGGATGATCTTTAATCTGTCCTCTGATTAGGGTAAAAGATTGGA-TGATATC-A
1 GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGATTAGGGTAAAAGACTAGATTGCT-TCAA
* *
23382244 TCTGCCCCATGATCG
65 TCTGCCCCATGGTCA
* *
23382259 GGGTAAGAGACTGGATG
1 GGGTAAAAGATTGGATG
23382276 ATGCCTTCCA
Statistics
Matches: 146, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
78 33 0.23
79 113 0.77
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (79 bp):
GGGTAAAAGATTGGATGGTCTTCAATTTGCCCTATGATTAGGGTAAAAGACTAGATTGCTTCAAT
CTGCCCCATGGTCA
Found at i:23382263 original size:38 final size:38
Alignment explanation
Indices: 23382164--23382277 Score: 113
Period size: 38 Copynumber: 2.9 Consensus size: 38
23382154 AGATTGCTTC
* * *
23382164 AATCTGCCCCATGGTCGGGGTAAGAGATCGGATGATCTTT
1 AATCTGCCCCATGATCGGGGTAAGAGATTGGATGA--TAT
* ** *
23382204 AATCTGTCCTC-TGATTAGGGTAAAAGATTGGATGATAT
1 AATCTG-CCCCATGATCGGGGTAAGAGATTGGATGATAT
* *
23382242 CATCTGCCCCATGATCGGGGTAAGAGACTGGATGAT
1 AATCTGCCCCATGATCGGGGTAAGAGATTGGATGAT
23382278 GCCTTCCATT
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
37 3 0.05
38 28 0.47
40 25 0.42
41 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (38 bp):
AATCTGCCCCATGATCGGGGTAAGAGATTGGATGATAT
Found at i:23382352 original size:33 final size:33
Alignment explanation
Indices: 23382309--23382372 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
23382299 CGGGTGCTTT
*
23382309 AATCTGCCCCATGATCGAGG-TAAGAGATTGGTC
1 AATCTACCCCATGATCG-GGATAAGAGATTGGTC
*
23382342 AATCTACCCCATGATTGGGATAAGAGATTGG
1 AATCTACCCCATGATCGGGATAAGAGATTGG
23382373 ATGATGTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25
Consensus pattern (33 bp):
AATCTACCCCATGATCGGGATAAGAGATTGGTC
Found at i:23382746 original size:97 final size:95
Alignment explanation
Indices: 23382522--23382765 Score: 312
Period size: 97 Copynumber: 2.5 Consensus size: 95
23382512 ATCTAGTGCT
* * * *
23382522 TCACTCCACTCTATTGTAACCTCAAGGACATTGAGCTCTTCT-ACCTGTTTTGACCCACTTCTCT
1 TCACTCCACTCCATTGTAACCTCAAGGACATTGAGCTCTTTTCA-TTATTTTGACCCACTTCTCT
* * *
23382586 GTACCTCACTAGGAAGATGAGATTCGAAGTC
65 GTACCTCACCAAGAAGATGAGATTCAAAGTC
*
23382617 TCACTCCACTCCACTGTAACCTC-AGAGACATTGAGCTCTGTTTCATTATTTTGACCCACTTCTC
1 TCACTCCACTCCATTGTAACCTCAAG-GACATTGAGCTCT-TTTCATTATTTTGACCCACTTCTC
* * *
23382681 TGTACCTCACCAAGAAGATGGGGTTTTAAAGTC
64 TGTACCTCACCAAGAAGAT-GAGATTCAAAGTC
* *
23382714 TCACTCCACTCCATTATAACCTCAAGGACATTGAGCTCTACTTCATTATTTT
1 TCACTCCACTCCATTGTAACCTCAAGGACATTGAGCTCT-TTTCATTATTTT
23382766 TTTTGACCCA
Statistics
Matches: 129, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
94 2 0.02
95 34 0.26
96 36 0.28
97 55 0.43
98 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (95 bp):
TCACTCCACTCCATTGTAACCTCAAGGACATTGAGCTCTTTTCATTATTTTGACCCACTTCTCTG
TACCTCACCAAGAAGATGAGATTCAAAGTC
Found at i:23383838 original size:112 final size:112
Alignment explanation
Indices: 23383641--23383850 Score: 305
Period size: 112 Copynumber: 1.9 Consensus size: 112
23383631 GTTAGACTAT
* * *
23383641 TAACCGTCATTTCAATGCAAAAATGCTTGAACATGATTTTAAAGTGGATAAAATTGAATTTGATT
1 TAACCGTCATTTCAATGCAAAAATGCTTGAACAGGATTGTAAAGTGGATAAAATTAAATTTGATT
23383706 GGAGACAAAGCTCGCATGAATGA-AAAGATTAAAAATCATTAGTCCAC
66 GGAGACAAAGCTCGCATGAATGAGAAA-ATTAAAAATCATTAGTCCAC
** * * * *
23383753 TAACCGTCATTTCAATGCAAAAATGCTTGAATGGGGTTGTGAGGTGGATAAAATTAAATTTTATT
1 TAACCGTCATTTCAATGCAAAAATGCTTGAACAGGATTGTAAAGTGGATAAAATTAAATTTGATT
* *
23383818 GGAGGCAAAGCTCGTATGAATGAGAAAATTAAA
66 GGAGACAAAGCTCGCATGAATGAGAAAATTAAA
23383851 CATTGATCAA
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
112 83 0.97
113 3 0.03
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (112 bp):
TAACCGTCATTTCAATGCAAAAATGCTTGAACAGGATTGTAAAGTGGATAAAATTAAATTTGATT
GGAGACAAAGCTCGCATGAATGAGAAAATTAAAAATCATTAGTCCAC
Found at i:23388620 original size:34 final size:34
Alignment explanation
Indices: 23388577--23388647 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
23388567 GTTATGCAAA
23388577 AAAAATATGTACATAATTTATAAGTAGAAATAAT
1 AAAAATATGTACATAATTTATAAGTAGAAATAAT
* *
23388611 AAAAATATGTACATAATTTATAGGTAGAAATTAT
1 AAAAATATGTACATAATTTATAAGTAGAAATAAT
23388645 AAA
1 AAA
23388648 TCGAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.32
Consensus pattern (34 bp):
AAAAATATGTACATAATTTATAAGTAGAAATAAT
Found at i:23388864 original size:30 final size:29
Alignment explanation
Indices: 23388817--23389004 Score: 164
Period size: 30 Copynumber: 6.3 Consensus size: 29
23388807 CATTAAAACT
* * *
23388817 GGGTCACATTTGGATTTTTGGAAAGTCTAA
1 GGGTCAAATTTGAATTTTTGGAAAGT-TGA
* *
23388847 GGGTCAAATTAGAATTTTTGAAAAGTTTGA
1 GGGTCAAATTTGAATTTTTGGAAAG-TTGA
* * *
23388877 GGGTTAAATTTTAATTTTTAGAAAGTTTG-
1 GGGTCAAATTTGAATTTTTGGAAAG-TTGA
**
23388906 GGGTCAAATTCAAATTTTTTGGAAAGTTTG-
1 GGGTCAAATTTGAA-TTTTTGGAAAG-TTGA
* * *
23388936 GGGTCATATTTGAATTTTTTGAATGTTTGA
1 GGGTCAAATTTGAATTTTTGGAAAG-TTGA
* *
23388966 GGGTCAAATTTGAATTTTTGGAATGTTTA
1 GGGTCAAATTTGAATTTTTGGAAAGTTGA
23388995 GGAGTCAAAT
1 GG-GTCAAAT
23389005 CATAATTTTA
Statistics
Matches: 132, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
29 29 0.22
30 102 0.77
31 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (29 bp):
GGGTCAAATTTGAATTTTTGGAAAGTTGA
Found at i:23390104 original size:10 final size:10
Alignment explanation
Indices: 23390091--23390115 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23390081 TGTATTCAAT
23390091 TTTATTTATA
1 TTTATTTATA
23390101 TTTATTTATA
1 TTTATTTATA
23390111 TTTAT
1 TTTAT
23390116 AAAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTATTTATA
Found at i:23392304 original size:193 final size:194
Alignment explanation
Indices: 23391957--23392401 Score: 506
Period size: 193 Copynumber: 2.3 Consensus size: 194
23391947 GAAATCGACG
* ** *
23391957 CGATAGCTGGGGTATCGCATATGTTGCGAGTCCTCGACAGCTTGTGCAAGCAGCATCATGAGTAG
1 CGATAGCTGGGGTATCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCATGAGTAC
* * * * *
23392022 GGAAATGAGTAAAGAATCCAAGAATGGATTACATGACCTAGGATGGTTGAGATTTATGCATAAGT
66 GAAAAAGAGTAAAGAATCCAAGAATGGATTACATGACCTACGATGGCTGAGATTTATGCATAAAT
* * * *
23392087 GCATATTCTCGACAGCTTGTGTGAGCAGCATCGTTAG-GGAACAGTTATA-TGCACAGATACTGT
131 GCATATTCTCGACAGCTCGTGTGAGCAGCATCGTTAGAGG-ACAGTT-TACAG-ACAGACACTAT
*
23392150 AT
193 AC
* * * * * * *
23392152 TGATAACTGCGGTACCGCATATGTTGCGAGTCCTCGATAGCTCGTGTGAGTAGCATCGTGAGT-C
1 CGATAGCTGGGGTATCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCATGAGTAC
* * * * * **
23392216 GAAAAAGAG-ATATGAATCCTA-AATGGATTATA-GGCCTTACGATGGCTGGGATTTATGTTTAA
66 GAAAAAGAGTA-AAGAATCCAAGAATGGATTACATGACC-TACGATGGCTGAGATTTATGCATAA
* *
23392278 ATGCATATTCTCGATAGCTCGTGTGAGCAGCATCGTTAGAGGACAGTTTACAGACAGACATTATA
129 ATGCATATTCTCGACAGCTCGTGTGAGCAGCATCGTTAGAGGACAGTTTACAGACAGACACTATA
23392343 C
194 C
* * *
23392344 CGATGGCTGGGGTATCGCATACGTTGCGAGTTCTCGACAGCTCGTGTGAGCAGCATCA
1 CGATAGCTGGGGTATCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCA
23392402 GGTATTGGTA
Statistics
Matches: 206, Mismatches: 40, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
192 62 0.30
193 74 0.36
194 17 0.08
195 53 0.26
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (194 bp):
CGATAGCTGGGGTATCGCATATGTTGCGAGTCCTCGACAGCTCGTGTGAGCAGCATCATGAGTAC
GAAAAAGAGTAAAGAATCCAAGAATGGATTACATGACCTACGATGGCTGAGATTTATGCATAAAT
GCATATTCTCGACAGCTCGTGTGAGCAGCATCGTTAGAGGACAGTTTACAGACAGACACTATAC
Found at i:23395589 original size:38 final size:38
Alignment explanation
Indices: 23395533--23395608 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
23395523 AAAATGACGA
* *
23395533 AAACTTACAAAGATTAGCATGAGAAATTACCATTGCTT
1 AAACATACAAAAATTAGCATGAGAAATTACCATTGCTT
*
23395571 AAACATACAAAAATTAGCATGAGAAATTATCATTGCTT
1 AAACATACAAAAATTAGCATGAGAAATTACCATTGCTT
23395609 TCTATGCTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (38 bp):
AAACATACAAAAATTAGCATGAGAAATTACCATTGCTT
Found at i:23396247 original size:16 final size:16
Alignment explanation
Indices: 23396226--23396256 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23396216 ATTTCCTTAA
*
23396226 AAAAAAAGAAGAAAAC
1 AAAAAAAGAACAAAAC
23396242 AAAAAAAGAACAAAA
1 AAAAAAAGAACAAAA
23396257 AACTAGGAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.06, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAACAAAAC
Found at i:23396832 original size:34 final size:34
Alignment explanation
Indices: 23396789--23396855 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
23396779 TAACCAAGCT
*
23396789 CGAGGATTGGAGGGGTCCTGAAAAGAATAGTTCC
1 CGAGGATTGGAAGGGTCCTGAAAAGAATAGTTCC
* *
23396823 CGAGGATTGGAAGGGTCTTGAAATGAATAGTTC
1 CGAGGATTGGAAGGGTCCTGAAAAGAATAGTTC
23396856 AGATTATGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.30, C:0.12, G:0.34, T:0.24
Consensus pattern (34 bp):
CGAGGATTGGAAGGGTCCTGAAAAGAATAGTTCC
Found at i:23397513 original size:100 final size:100
Alignment explanation
Indices: 23397409--23397778 Score: 340
Period size: 100 Copynumber: 3.7 Consensus size: 100
23397399 TTACAAACAA
* * * * * *
23397409 CAAATGTTATCTCCCCGAAGATGCAGTAGAGTAAGATGAAGATATAACACCAAATCCTATACCCT
1 CAAATCTTATCTCCCTGAAGATGCAATAGAGCAAGATGAAGATACAACATCAAATCCTATACCCT
* * *
23397474 TAAAGTTACAGTGGGTCGGATTAAAGCTATATCGG
66 TGAAGTTGCAGTGGGTCAGATTAAAGCTATATCGG
* * * * * **
23397509 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATG-A-A-ACAACATTAAATCCTATATTCT
1 CAAATCTTATCTCCCTGAAGATGCAATAGAGCAAGATGAAGATACAACATCAAATCCTATACCCT
* * * * *
23397571 TGAAGTTGCAG-GGATCAGATTAAAACTACAACAG
66 TGAAGTTGCAGTGGGTCAGATTAAAGCTATATCGG
** * * * * * *
23397605 CAAATCTTTATCTCTTTGAAGTTGCAACAAAGCAAGATGAAGCTACCACATCAAATCCTATACCT
1 CAAATC-TTATCTCCCTGAAGATGCAATAGAGCAAGATGAAGATACAACATCAAATCCTATACCC
*
23397670 TTGAAGTTGCAGTGGGTCAGATTGAAGCTAT-T-GAAG
65 TTGAAGTTGCAGTGGGTCAGATTAAAGCTATATCG--G
* * * * *
23397706 CAAATCTTATCTCCCTGAAGATGTAATGGAGTAAGATGAAGTTACGACATCAAATCCTATATCCC
1 CAAATCTTATCTCCCTGAAGATGCAATAGAGCAAGATGAAGATACAACATCAAATCCTATA-CCC
23397771 -TGAAGTTG
65 TTGAAGTTG
23397779 TAGTAAATCA
Statistics
Matches: 215, Mismatches: 47, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
96 23 0.11
97 53 0.25
98 2 0.01
99 1 0.00
100 113 0.53
101 23 0.11
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (100 bp):
CAAATCTTATCTCCCTGAAGATGCAATAGAGCAAGATGAAGATACAACATCAAATCCTATACCCT
TGAAGTTGCAGTGGGTCAGATTAAAGCTATATCGG
Found at i:23398554 original size:11 final size:11
Alignment explanation
Indices: 23398540--23398565 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23398530 GACAAAAAAG
23398540 AAAAAATATGT
1 AAAAAATATGT
23398551 AAAAAATATGT
1 AAAAAATATGT
23398562 AAAA
1 AAAA
23398566 TTGGCTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (11 bp):
AAAAAATATGT
Found at i:23399532 original size:22 final size:21
Alignment explanation
Indices: 23399486--23399534 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
23399476 ATTTAGCTTA
23399486 ATTTAA-TTTAATTTTTCCTC
1 ATTTAATTTTAATTTTTCCTC
* * *
23399506 CTTTAATTTTATTTGTTTCGTC
1 ATTTAATTTTAATT-TTTCCTC
23399528 ATTTAAT
1 ATTTAAT
23399535 CCATTGACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.22
21 6 0.26
22 12 0.52
ACGTcount: A:0.22, C:0.12, G:0.04, T:0.61
Consensus pattern (21 bp):
ATTTAATTTTAATTTTTCCTC
Found at i:23407865 original size:32 final size:29
Alignment explanation
Indices: 23407828--23407892 Score: 85
Period size: 32 Copynumber: 2.1 Consensus size: 29
23407818 TTTTTTGACC
**
23407828 TTTTAATTGCATCCTTTTTTATCTTTTATTT
1 TTTTAATTGCA-CCCCTTTTAT-TTTTATTT
23407859 ATTTTAATTGCACCCCTTTTATTTTTATTT
1 -TTTTAATTGCACCCCTTTTATTTTTATTT
23407889 TTTT
1 TTTT
23407893 GCAATTTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 4 0.13
30 8 0.26
31 8 0.26
32 11 0.35
ACGTcount: A:0.17, C:0.14, G:0.03, T:0.66
Consensus pattern (29 bp):
TTTTAATTGCACCCCTTTTATTTTTATTT
Found at i:23408078 original size:17 final size:16
Alignment explanation
Indices: 23408058--23408131 Score: 51
Period size: 17 Copynumber: 4.3 Consensus size: 16
23408048 ATTTAGTCCC
23408058 TTTTATAGTTTTTTTAT
1 TTTTATA-TTTTTTTAT
* *
23408075 TTTTTTATCTTTATTTTT
1 TTTTATAT-TTT-TTTAT
*
23408093 ATTTTATGTTTATTTT-T
1 -TTTTATATTT-TTTTAT
*
23408110 TTTTATATTTTTACTAT
1 TTTTATATTTTT-TTAT
23408127 TTTTA
1 TTTTA
23408132 GTTCATGCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
15 2 0.04
16 11 0.24
17 16 0.36
18 9 0.20
19 7 0.16
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTATATTTTTTTAT
Found at i:23408080 original size:11 final size:11
Alignment explanation
Indices: 23408074--23408121 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
23408064 AGTTTTTTTA
23408074 TTTTTTTATCTT
1 TTTTTTTAT-TT
*
23408086 TATTTTTATTT
1 TTTTTTTATTT
* *
23408097 TATGTTTATTT
1 TTTTTTTATTT
23408108 TTTTTTATATTT
1 TTTTTT-TATTT
23408120 TT
1 TT
23408122 ACTATTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
11 16 0.52
12 15 0.48
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:23408082 original size:19 final size:20
Alignment explanation
Indices: 23408058--23408097 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
23408048 ATTTAGTCCC
23408058 TTTTATAGTT-TTTTTATTT
1 TTTTATAGTTATTTTTATTT
**
23408077 TTTTATCTTTATTTTTATTT
1 TTTTATAGTTATTTTTATTT
23408097 T
1 T
23408098 ATGTTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.80
Consensus pattern (20 bp):
TTTTATAGTTATTTTTATTT
Found at i:23408284 original size:34 final size:34
Alignment explanation
Indices: 23408206--23408287 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 34
23408196 TTTTAGTTTG
23408206 TTATTTTTAGTTA-TGTCATGATTGCAAATTTTTA
1 TTATTTTTA-TTATTGTCATGATTGCAAATTTTTA
* * *
23408240 TTATTGTTATTATTGTCATGGGTTG-ATATTATTTA
1 TTATTTTTATTATTGTCAT-GATTGCAAATT-TTTA
23408275 -TATTTTTATTATT
1 TTATTTTTATTATT
23408288 TTATTTTATT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
33 3 0.07
34 30 0.73
35 8 0.20
ACGTcount: A:0.24, C:0.04, G:0.12, T:0.60
Consensus pattern (34 bp):
TTATTTTTATTATTGTCATGATTGCAAATTTTTA
Found at i:23408296 original size:25 final size:27
Alignment explanation
Indices: 23408268--23408327 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
23408258 TGGGTTGATA
*
23408268 TTATTTATATT-TTT-ATTATTTTATT
1 TTATTTATATTATTTAATTATTGTATT
*
23408293 TTATTT-T-TTATTTAATTGTTGTATT
1 TTATTTATATTATTTAATTATTGTATT
23408318 TT-TTTATATT
1 TTATTTATATT
23408328 CATGTATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 2 0.07
24 7 0.24
25 18 0.62
26 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (27 bp):
TTATTTATATTATTTAATTATTGTATT
Found at i:23414999 original size:50 final size:50
Alignment explanation
Indices: 23414945--23415086 Score: 137
Period size: 50 Copynumber: 2.8 Consensus size: 50
23414935 ACTTTAGTGA
* * *
23414945 CAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATGAGGCTACAAAAC
1 CAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAAAC
** * ** *
23414995 CAAATCCCATAC-CCTTGAAGTTGTAGTGG-GTC-GGATTGAAGCTACAGTAG
1 CAAATCTTAT-CTCCTTGAAGTTGTAGTGGAG-CAAGA-TGAAGCTACAAAAC
*
23415045 CAAATCTTTATCTCCTTGAAGTTTTAGTGGAGCAAGATGAAG
1 CAAATC-TTATCTCCTTGAAGTTGTAGTGGAGCAAGATGAAG
23415087 TTACGTCATC
Statistics
Matches: 72, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
49 3 0.04
50 41 0.57
51 25 0.35
52 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (50 bp):
CAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAAAC
Found at i:23414999 original size:100 final size:101
Alignment explanation
Indices: 23414895--23415385 Score: 269
Period size: 101 Copynumber: 4.9 Consensus size: 101
23414885 GTTACAACAT
* * * * **
23414895 CAAATCCTATATCTTTGATGCTCTAGTGGATCAGATTGAAACTTTAGT-GACAAATC-TTATCTC
1 CAAATCCCATACCCTTGAAGCTCTAGTGGATCAGATTGAAACTACAGTAG-CAAATCTTTATCTC
23414958 CCTAAAGTTGTAGTGGAGCAAGATGAGGCTACAAAAC
65 CCTAAAGTTGTAGTGGAGCAAGATGAGGCTACAAAAC
* * * * *
23414995 CAAATCCCATACCCTTGAAGTTGTAGTGGGTCGGATTGAAGCTACAGTAGCAAATCTTTATCTCC
1 CAAATCCCATACCCTTGAAGCTCTAGTGGATCAGATTGAAACTACAGTAGCAAATCTTTATCTCC
* * * * * *** *
23415060 TTGAAGTTTTAGTGGAGCAAGATGAAGTTACGTCAT
66 CTAAAGTTGTAGTGGAGCAAGATGAGGCTACAAAAC
* * * * * * * * *
23415096 CAAATCCTATACCCATGAAGTTAC-AGTGGGTCAGATTGAAGCTATAGGATCAAATCTTTGTCTC
1 CAAATCCCATACCCTTGAAGCT-CTAGTGGATCAGATTGAAACTACAGTAGCAAATCTTTATCTC
* * * * * * * * *
23415160 CCTGAAGTTGCAGTGAAGAAAGATGAAGTTACGACAT
65 CCTAAAGTTGTAGTGGAGCAAGATGAGGCTACAAAAC
*** * * * * * * * *
23415197 CAAATAATATACCCCTAAAGTTAC-AGTGGGTCGGATTGAAGCTATAGAAGCAAATCTTTATCTC
1 CAAATCCCATACCCTTGAAGCT-CTAGTGGATCAGATTGAAACTACAGTAGCAAATCTTTATCTC
* * * * *
23415261 CCTGAAGGTT-TAGTGGAACAAGATGAAGCTATC-ACAT
65 CCT-AAAGTTGTAGTGGAGCAAGATGAGGCTA-CAAAAC
* * * * * * * * * **
23415298 CAGATCCTATACCCCTGAAGTTGTAATGG-TCGGATTGGAGCTACAAAAGCAAAT-TTTATCTCC
1 CAAATCCCATACCCTTGAAGCTCTAGTGGATCAGATTGAAACTACAGTAGCAAATCTTTATCTCC
* * *
23415361 CTAAAGATGCAGTAGAGCAAGATGA
66 CTAAAGTTGTAGTGGAGCAAGATGA
23415386 AGTTACGACA
Statistics
Matches: 321, Mismatches: 63, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
98 4 0.01
99 24 0.07
100 65 0.20
101 223 0.69
102 5 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (101 bp):
CAAATCCCATACCCTTGAAGCTCTAGTGGATCAGATTGAAACTACAGTAGCAAATCTTTATCTCC
CTAAAGTTGTAGTGGAGCAAGATGAGGCTACAAAAC
Found at i:23415073 original size:51 final size:51
Alignment explanation
Indices: 23415007--23415168 Score: 145
Period size: 51 Copynumber: 3.2 Consensus size: 51
23414997 AATCCCATAC
* * *
23415007 CCTTGAAGTTGTAGTGGGTCGGATTGAAGCTACAGTAGCAAATCTTTATCT
1 CCTTGAAGTTATAGTGGGTCAGATTGAAGCTACAGTATCAAATCTTTATCT
* * *
23415058 CCTTGAAGTTTTAGTGGAG-CAAGA-TGAAGTTAC-GTCATCAAATC-CTATAC-
1 CCTTGAAGTTATAGTGG-GTC-AGATTGAAGCTACAGT-ATCAAATCTTTAT-CT
* * * * *
23415108 CCATGAAGTTACAGTGGGTCAGATTGAAGCTATAGGATCAAATCTTTGTCT
1 CCTTGAAGTTATAGTGGGTCAGATTGAAGCTACAGTATCAAATCTTTATCT
*
23415159 CCCTGAAGTT
1 CCTTGAAGTT
23415169 GCAGTGAAGA
Statistics
Matches: 88, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
49 4 0.05
50 36 0.41
51 45 0.51
52 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (51 bp):
CCTTGAAGTTATAGTGGGTCAGATTGAAGCTACAGTATCAAATCTTTATCT
Found at i:23415100 original size:101 final size:101
Alignment explanation
Indices: 23414945--23415442 Score: 529
Period size: 101 Copynumber: 5.0 Consensus size: 101
23414935 ACTTTAGTGA
* * * * * * *
23414945 CAAATC-TTATCTCCCTAAAGTTGTAGTGGAGCAAGATGAGGCTACAAAACCAAATCCCATACCC
1 CAAATCTTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGTTACGACATCAAATCCTATACCC
* ** *
23415009 TTGAAGTTGTAGTGGGTCGGATTGAAGCTACAGTAG
66 CTGAAGTTACAGTGGGTCGGATTGAAGCTACAGAAG
* * *
23415045 CAAATCTTTATCTCCTTGAAGTTTTAGTGGAGCAAGATGAAGTTACGTCATCAAATCCTATACCC
1 CAAATCTTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGTTACGACATCAAATCCTATACCC
* * * * *
23415110 ATGAAGTTACAGTGGGTCAGATTGAAGCTATAGGAT
66 CTGAAGTTACAGTGGGTCGGATTGAAGCTACAGAAG
* * * * **
23415146 CAAATCTTTGTCTCCCTGAAGTTGCAGTGAAGAAAGATGAAGTTACGACATCAAATAATATACCC
1 CAAATCTTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGTTACGACATCAAATCCTATACCC
* *
23415211 CTAAAGTTACAGTGGGTCGGATTGAAGCTATAGAAG
66 CTGAAGTTACAGTGGGTCGGATTGAAGCTACAGAAG
* * *
23415247 CAAATCTTTATCTCCCTGAAGGTT-TAGTGGAACAAGATGAAGCTATC-ACATCAGATCCTATAC
1 CAAATCTTTATCTCCCTGAA-GTTGTAGTGGAGCAAGATGAAGTTA-CGACATCAAATCCTATAC
** * * *
23415310 CCCTGAAGTTGTAAT-GGTCGGATTGGAGCTACAAAAG
64 CCCTGAAGTTACAGTGGGTCGGATTGAAGCTACAGAAG
* * * * * *
23415347 CAAAT-TTTATCTCCCTAAAGATGCAGTAGAGCAAGATGAAGTTACGACATCAAATCCTATATCT
1 CAAATCTTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGTTACGACATCAAATCCTATACCC
* * * * *
23415411 CTAAAGTTGCAGTGGATCAGATTAAAGCTACA
66 CTGAAGTTACAGTGGGTCGGATTGAAGCTACA
23415443 ATATCGAATC
Statistics
Matches: 329, Mismatches: 63, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
98 3 0.01
99 55 0.17
100 44 0.13
101 223 0.68
102 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (101 bp):
CAAATCTTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGTTACGACATCAAATCCTATACCC
CTGAAGTTACAGTGGGTCGGATTGAAGCTACAGAAG
Found at i:23415136 original size:50 final size:49
Alignment explanation
Indices: 23415003--23415237 Score: 122
Period size: 51 Copynumber: 4.7 Consensus size: 49
23414993 ACCAAATCCC
* ** * * *
23415003 ATACCCTTGAAGTTGTAGTGGGTCGGATTGAAGCTACAGT-AGCAAATCT
1 ATACCCCTGAAGTTACAGTGGGTCAGATTGAAGTTAC-GTCATCAAATCT
* * **
23415052 TTATCTCCTTGAAGTTTTAGTGGAG-CAAGA-TGAAGTTACGTCATCAAATCCT
1 ATA-C-CCCTGAAGTTACAGTGG-GTC-AGATTGAAGTTACGTCATCAAAT-CT
* *
23415104 ATACCCATGAAGTTACAGTGGGTCAGATTGAAGCTATA-G-GATCAAATCT
1 ATACCCCTGAAGTTACAGTGGGTCAGATTGAAG-T-TACGTCATCAAATCT
* * * * ** * *
23415153 TTGTCTCCCTGAAGTTGCAGTGAAGAAAGA-TGAAGTTACGACATCAAATAAT
1 AT-AC-CCCTGAAGTTACAGTG-GGTCAGATTGAAGTTACGTCATCAAAT-CT
* *
23415205 ATACCCCTAAAGTTACAGTGGGTCGGATTGAAG
1 ATACCCCTGAAGTTACAGTGGGTCAGATTGAAG
23415238 CTATAGAAGC
Statistics
Matches: 142, Mismatches: 27, Indels: 33
0.70 0.13 0.16
Matches are distributed among these distances:
49 14 0.10
50 52 0.37
51 61 0.43
52 15 0.11
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (49 bp):
ATACCCCTGAAGTTACAGTGGGTCAGATTGAAGTTACGTCATCAAATCT
Found at i:23415845 original size:23 final size:23
Alignment explanation
Indices: 23415819--23415862 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
23415809 AAAAACCCAA
23415819 CCAATAAATAAA-ATAAATAAAGC
1 CCAATAAATAAATA-AAATAAAGC
23415842 CCAATAAATAAATAAAATAAA
1 CCAATAAATAAATAAAATAAA
23415863 TTAAAATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.68, C:0.11, G:0.02, T:0.18
Consensus pattern (23 bp):
CCAATAAATAAATAAAATAAAGC
Found at i:23417199 original size:15 final size:15
Alignment explanation
Indices: 23417175--23417226 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
23417165 CCTTTTATTG
*
23417175 TTTTTATTTATTTATC
1 TTTTT-TTTATTTATA
23417191 TTTTTTTTATTT-TA
1 TTTTTTTTATTTATA
*
23417205 TGTTTATTTTGTTTATA
1 T-TTT-TTTTATTTATA
23417222 TTTTT
1 TTTTT
23417227 AATATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.35
16 15 0.48
17 3 0.10
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (15 bp):
TTTTTTTTATTTATA
Found at i:23417214 original size:16 final size:16
Alignment explanation
Indices: 23417167--23417214 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
23417157 ATTTAGTCCC
23417167 TTTTATTGTTTTTATTTA
1 TTTTA-TGTTTTT-TTTA
*
23417185 -TTTATCTTTTTTTTA
1 TTTTATGTTTTTTTTA
23417200 TTTTATGTTTATTTT
1 TTTTATGTTT-TTTT
23417215 GTTTATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 4 0.15
16 14 0.54
17 8 0.31
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (16 bp):
TTTTATGTTTTTTTTA
Found at i:23418294 original size:11 final size:13
Alignment explanation
Indices: 23418254--23418291 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
23418244 AAGATGTTTA
23418254 AATATATT-TGAAT
1 AATATATTAT-AAT
*
23418267 GATATATTATAAT
1 AATATATTATAAT
23418280 AATATATTATAA
1 AATATATTATAA
23418292 ATAGATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 21 0.95
14 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (13 bp):
AATATATTATAAT
Found at i:23422725 original size:17 final size:17
Alignment explanation
Indices: 23422703--23422744 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
23422693 GACTATAGTT
*
23422703 AGTAGTTAGCAGTTAGC
1 AGTAGTTAGCAGCTAGC
23422720 AGTAGTTAGCAGCTAGC
1 AGTAGTTAGCAGCTAGC
*
23422737 AGAAGTTA
1 AGTAGTTA
23422745 AGTCTGTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (17 bp):
AGTAGTTAGCAGCTAGC
Found at i:23424102 original size:99 final size:99
Alignment explanation
Indices: 23423930--23424127 Score: 315
Period size: 99 Copynumber: 2.0 Consensus size: 99
23423920 ATAGCTATGG
*
23423930 ATAGGGGTTTTAAAAAGGTGTTAATCGTTTTCGACAATCATGAGGTGGTACAAGCTATTCAGGAG
1 ATAGGGGTTTTAAAAAGGTGTTAATCGTTTTCGACAATCATGAGGTGGCACAAGCTATTCAGGAG
* *
23423995 AGTTTTACAAATGTGTCAAATTCCGCTTTGGTTA
66 AGTGTTACAAAGGTGTCAAATTCCGCTTTGGTTA
* * * *
23424029 ATAGGGGTTTTGACAAGGTGTTAATGGTTTTCGACAATCATGAGGTGGCACAAGCTATTCAGGGG
1 ATAGGGGTTTTAAAAAGGTGTTAATCGTTTTCGACAATCATGAGGTGGCACAAGCTATTCAGGAG
* *
23424094 TGTGTTACAAAGGTGTCAAATTCCGTTTTGGTTA
66 AGTGTTACAAAGGTGTCAAATTCCGCTTTGGTTA
23424128 GAAGAATTAT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
99 90 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (99 bp):
ATAGGGGTTTTAAAAAGGTGTTAATCGTTTTCGACAATCATGAGGTGGCACAAGCTATTCAGGAG
AGTGTTACAAAGGTGTCAAATTCCGCTTTGGTTA
Done.