Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 75 of 182
Found at i:23769271 original size:23 final size:23
Alignment explanation
Indices: 23769240--23769294 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
23769230 CCATGAATTG
23769240 TTTATGGTTATCGAATTTGGAGAT
1 TTTA-GGTTATCGAATTTGGAGAT
* * *
23769264 TTTAGGTTGTTGAATTTGGGGAT
1 TTTAGGTTATCGAATTTGGAGAT
*
23769287 TTTGGGTT
1 TTTAGGTT
23769295 TTAGGAGGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.18, C:0.02, G:0.31, T:0.49
Consensus pattern (23 bp):
TTTAGGTTATCGAATTTGGAGAT
Found at i:23769297 original size:30 final size:30
Alignment explanation
Indices: 23769263--23769380 Score: 86
Period size: 30 Copynumber: 4.1 Consensus size: 30
23769253 AATTTGGAGA
23769263 TTTTAGGTTGTTGAATTTGGGGATTTTGGG
1 TTTTAGGTTGTTGAATTTGGGGATTTTGGG
** * *
23769293 TTTTAGGAGGTCGAATTTGGGAATTTTGGG
1 TTTTAGGTTGTTGAATTTGGGGATTTTGGG
* * *
23769323 --TAAGAGTT-TTG-ATTTAGGGATTTT-TG
1 TTTTAG-GTTGTTGAATTTGGGGATTTTGGG
* * *
23769349 -TTTAGGTTTTTTGATTTTGGAGATTTTGGG
1 TTTTAGG-TTGTTGAATTTGGGGATTTTGGG
23769379 TT
1 TT
23769381 AATGCTCTTC
Statistics
Matches: 65, Mismatches: 16, Indels: 13
0.69 0.17 0.14
Matches are distributed among these distances:
26 2 0.03
27 16 0.25
28 8 0.12
29 11 0.17
30 27 0.42
31 1 0.02
ACGTcount: A:0.17, C:0.01, G:0.32, T:0.50
Consensus pattern (30 bp):
TTTTAGGTTGTTGAATTTGGGGATTTTGGG
Found at i:23769361 original size:13 final size:15
Alignment explanation
Indices: 23769329--23769375 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 15
23769319 TGGGTAAGAG
23769329 TTTTGATTTAGGGAT
1 TTTTGATTTAGGGAT
*
23769344 TTTTG-TTTA-GGTT
1 TTTTGATTTAGGGAT
*
23769357 TTTTGATTTTGGAGAT
1 TTTTGATTTAGG-GAT
23769373 TTT
1 TTT
23769376 GGGTTAATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
13 8 0.31
14 7 0.27
15 6 0.23
16 5 0.19
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (15 bp):
TTTTGATTTAGGGAT
Found at i:23769969 original size:11 final size:11
Alignment explanation
Indices: 23769953--23770027 Score: 84
Period size: 11 Copynumber: 6.8 Consensus size: 11
23769943 GATGATGATT
23769953 ATAATTTTAAA
1 ATAATTTTAAA
23769964 ATAATTTTAATA
1 ATAATTTTAA-A
*
23769976 AT-TTTATTAAAA
1 ATAATT-TT-AAA
23769988 ATAATTTTAAA
1 ATAATTTTAAA
*
23769999 TTAATTTTAAA
1 ATAATTTTAAA
23770010 ATAATTTT--A
1 ATAATTTTAAA
23770019 ATAATTTTA
1 ATAATTTTA
23770028 TATTTTAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 9 0.16
11 32 0.58
12 10 0.18
13 4 0.07
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATAATTTTAAA
Found at i:23770422 original size:19 final size:20
Alignment explanation
Indices: 23770392--23770469 Score: 74
Period size: 19 Copynumber: 4.0 Consensus size: 20
23770382 AAAAATACAA
23770392 ATTTTAGAATTTTTATAAA-T
1 ATTTT-GAATTTTTATAAATT
*
23770412 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTATAAATT
* *
23770431 ATGTTCAATTTTTGA-AAATT
1 ATTTTGAATTTTT-ATAAATT
*
23770451 ATTTTG-ATTTTTATTAATT
1 ATTTTGAATTTTTATAAATT
23770470 TTTGTTAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
18 9 0.19
19 20 0.42
20 18 0.38
21 1 0.02
ACGTcount: A:0.36, C:0.01, G:0.06, T:0.56
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:23770462 original size:20 final size:19
Alignment explanation
Indices: 23770400--23770463 Score: 67
Period size: 20 Copynumber: 3.4 Consensus size: 19
23770390 AAATTTTAGA
*
23770400 ATTTTTATAAA-TATTTTG
1 ATTTTTAAAAATTATTTTG
* **
23770418 AATTTTAAAAATTATGTTCA
1 ATTTTTAAAAATTAT-TTTG
*
23770438 ATTTTTGAAAATTATTTTG
1 ATTTTTAAAAATTATTTTG
23770457 ATTTTTA
1 ATTTTTA
23770464 TTAATTTTTG
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
18 9 0.26
19 11 0.31
20 15 0.43
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.56
Consensus pattern (19 bp):
ATTTTTAAAAATTATTTTG
Found at i:23772324 original size:26 final size:26
Alignment explanation
Indices: 23772295--23772387 Score: 123
Period size: 26 Copynumber: 3.6 Consensus size: 26
23772285 CTTTTAGAAA
*
23772295 TTTAGCTCTTATGAGCCCAGACAGAG
1 TTTAGCTCTTACGAGCCCAGACAGAG
*
23772321 TTTAGCTCTTACGAGCCCAGATAGAG
1 TTTAGCTCTTACGAGCCCAGACAGAG
* * *
23772347 TTTATCTCTTACGAGCCCAGACAAAA
1 TTTAGCTCTTACGAGCCCAGACAGAG
* *
23772373 TATCGCTCTTACGAG
1 TTTAGCTCTTACGAG
23772388 ATCAGATAGA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 58 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
TTTAGCTCTTACGAGCCCAGACAGAG
Found at i:23772363 original size:52 final size:52
Alignment explanation
Indices: 23772295--23772445 Score: 137
Period size: 52 Copynumber: 2.9 Consensus size: 52
23772285 CTTTTAGAAA
* * * * *
23772295 TTTAGCTCTTATGAGCCCAGACAGAGTTTAGCTCTTACGAGCCCAGATAGAG
1 TTTAGCTCTTACGAGCCCAGACAAAATATAGCTCTTACGAGACCAGATAGAG
* * * *
23772347 TTTATCTCTTACGAGCCCAGACAAAATATCGCTCTTACGAGATCAGATAGAA
1 TTTAGCTCTTACGAGCCCAGACAAAATATAGCTCTTACGAGACCAGATAGAG
* * * *
23772399 TATCGCTCTTAAGAG-CCAGAATCAGAAT-TACGCTCTTACGAG-CCAGA
1 TTTAGCTCTTACGAGCCCAG-A-CAAAATATA-GCTCTTACGAGACCAGA
23772446 ATCAAAATTA
Statistics
Matches: 80, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
51 4 0.05
52 60 0.75
53 16 0.20
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (52 bp):
TTTAGCTCTTACGAGCCCAGACAAAATATAGCTCTTACGAGACCAGATAGAG
Found at i:23772393 original size:26 final size:26
Alignment explanation
Indices: 23772352--23772445 Score: 86
Period size: 26 Copynumber: 3.6 Consensus size: 26
23772342 TAGAGTTTAT
*
23772352 CTCTTACGAGCCCAGACAAAATATCG
1 CTCTTACGAGACCAGACAAAATATCG
* * *
23772378 CTCTTACGAGATCAGATAGAATATCG
1 CTCTTACGAGACCAGACAAAATATCG
* *
23772404 CTCTTAAGAG-CCAGAATCAGAAT-TACG
1 CTCTTACGAGACCAG-A-CAAAATAT-CG
23772431 CTCTTACGAG-CCAGA
1 CTCTTACGAGACCAGA
23772446 ATCAAAATTA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
25 3 0.05
26 34 0.60
27 20 0.35
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (26 bp):
CTCTTACGAGACCAGACAAAATATCG
Found at i:23772433 original size:27 final size:27
Alignment explanation
Indices: 23772402--23772480 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
23772392 GATAGAATAT
23772402 CGCTCTTAAGAGCCAGAATCAGAATTA
1 CGCTCTTAAGAGCCAGAATCAGAATTA
* *
23772429 CGCTCTTACGAGCCAGAATCAAAATTA
1 CGCTCTTAAGAGCCAGAATCAGAATTA
* * *
23772456 CGCTTTTATGAGCCAAAATCAGAAT
1 CGCTCTTAAGAGCCAGAATCAGAAT
23772481 GTCTTCATCT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (27 bp):
CGCTCTTAAGAGCCAGAATCAGAATTA
Found at i:23777066 original size:41 final size:41
Alignment explanation
Indices: 23776999--23777308 Score: 381
Period size: 41 Copynumber: 7.5 Consensus size: 41
23776989 TTATGCTTTA
* *
23776999 CCGAGTCATAAGTCTTCCTTTAAATATAATCTCATGCTCATC
1 CCGAGACATGAGTCTTCCTTT-AATATAATCTCATGCTCATC
* *
23777041 CCGAGTCACGAGTCTTCCTTTAATATAATCTCAAT-CTCATC
1 CCGAGACATGAGTCTTCCTTTAATATAATCTC-ATGCTCATC
*
23777082 CCGAGACATGAGTCTTCC-TTAATATAATCTCATGCACATC
1 CCGAGACATGAGTCTTCCTTTAATATAATCTCATGCTCATC
*
23777122 CCAAGACATGAGTCTTCCTTTAATATAATCTCATGCTCATC
1 CCGAGACATGAGTCTTCCTTTAATATAATCTCATGCTCATC
* * * * * *
23777163 CTGAGACACGAGTCTTCATTTAATTTAATCTCATGTTCATT
1 CCGAGACATGAGTCTTCCTTTAATATAATCTCATGCTCATC
** * * * *
23777204 TTGAGTCACGAGTCTTCTTTTAATATAATCTCATGCTCATT
1 CCGAGACATGAGTCTTCCTTTAATATAATCTCATGCTCATC
** *
23777245 TTGAGTCATGAGTCTTCCTTTAATATAATCTCATGCTCATC
1 CCGAGACATGAGTCTTCCTTTAATATAATCTCATGCTCATC
*
23777286 TCGAGACATGAGTCTTCCATTTA
1 CCGAGACATGAGTCTTCC-TTTA
23777309 TACTTAAAGT
Statistics
Matches: 240, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.01
40 35 0.15
41 178 0.74
42 25 0.10
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (41 bp):
CCGAGACATGAGTCTTCCTTTAATATAATCTCATGCTCATC
Found at i:23779621 original size:30 final size:30
Alignment explanation
Indices: 23779585--23779657 Score: 121
Period size: 30 Copynumber: 2.4 Consensus size: 30
23779575 ATTAAAATTA
23779585 TTTAATAATTTTATTATTTCA-AAAAATAAT
1 TTTAATAATTTTATT-TTTCAGAAAAATAAT
*
23779615 TTTAATAATTTTATTTTTTAGAAAAATAAT
1 TTTAATAATTTTATTTTTCAGAAAAATAAT
23779645 TTTAATAATTTTA
1 TTTAATAATTTTA
23779658 AAATCTTTAC
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 4 0.10
30 37 0.90
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (30 bp):
TTTAATAATTTTATTTTTCAGAAAAATAAT
Found at i:23782624 original size:4 final size:4
Alignment explanation
Indices: 23782617--23782654 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
23782607 ATTGATTCCT
*
23782617 ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
23782655 TAAGATGAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (4 bp):
ATAC
Found at i:23786312 original size:24 final size:23
Alignment explanation
Indices: 23786263--23786312 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
23786253 GACAGAATAA
* * * *
23786263 GAAGCAAAATACATAAAAGAAGT
1 GAAGCAAAAAACACAAAACAAAT
23786286 GAAGACAAAAAACACAAAACAAAT
1 GAAG-CAAAAAACACAAAACAAAT
23786310 GAA
1 GAA
23786313 TTCCATCTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.66, C:0.12, G:0.14, T:0.08
Consensus pattern (23 bp):
GAAGCAAAAAACACAAAACAAAT
Found at i:23801271 original size:14 final size:14
Alignment explanation
Indices: 23801254--23801283 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23801244 TTTAAACATT
*
23801254 AAAAGATAAATCTA
1 AAAAGATAAATATA
23801268 AAAAGATAAATATA
1 AAAAGATAAATATA
23801282 AA
1 AA
23801284 TTAAATACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (14 bp):
AAAAGATAAATATA
Found at i:23801290 original size:11 final size:11
Alignment explanation
Indices: 23801274--23801306 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
23801264 TCTAAAAAGA
23801274 TAAATATAAAT
1 TAAATATAAAT
*
23801285 TAAATACAAAT
1 TAAATATAAAT
23801296 TAAATATAAAT
1 TAAATATAAAT
23801307 AATAACCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAATATAAAT
Found at i:23802862 original size:22 final size:22
Alignment explanation
Indices: 23802837--23802886 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
23802827 ACATATAATG
* *
23802837 AATAAATAGAAAATTAAAAATA
1 AATAAATAGAAAAGTAAAAAGA
*
23802859 AATAAATATAAAAGTAAAAAGA
1 AATAAATAGAAAAGTAAAAAGA
23802881 AA-AAAT
1 AATAAAT
23802887 TTGGGTTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (22 bp):
AATAAATAGAAAAGTAAAAAGA
Found at i:23815771 original size:59 final size:59
Alignment explanation
Indices: 23815692--23815810 Score: 159
Period size: 59 Copynumber: 2.0 Consensus size: 59
23815682 TTTGGTCATT
* *
23815692 CAATTAAAAATATTTCCAATTTAAATATTAACATTTTCAATCGTTTCTATTTTGCTTAC
1 CAATTAAAAATATTTCCAATTTAAACACTAACATTTTCAATCGTTTCTATTTTGCTTAC
* ** * *
23815751 CAATTATAAAA-ATTTTCAATTTAGGCACTAACGTTTTCAATCGTTTCTATTTTGGTTAC
1 CAATTA-AAAATATTTCCAATTTAAACACTAACATTTTCAATCGTTTCTATTTTGCTTAC
23815810 C
1 C
23815811 TTCCATTAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
59 48 0.92
60 4 0.08
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.45
Consensus pattern (59 bp):
CAATTAAAAATATTTCCAATTTAAACACTAACATTTTCAATCGTTTCTATTTTGCTTAC
Found at i:23836092 original size:22 final size:22
Alignment explanation
Indices: 23836058--23836109 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
23836048 TGGTGGTTGC
* * *
23836058 TTGATTTATGCTTGATTTTTGT
1 TTGATTCAAGCTTGAGTTTTGT
23836080 TTGATTCAAGCTTGAGTTTTGT
1 TTGATTCAAGCTTGAGTTTTGT
23836102 TTGATTCA
1 TTGATTCA
23836110 TGGAAGGTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.17, C:0.08, G:0.19, T:0.56
Consensus pattern (22 bp):
TTGATTCAAGCTTGAGTTTTGT
Found at i:23838200 original size:28 final size:28
Alignment explanation
Indices: 23838168--23838243 Score: 143
Period size: 28 Copynumber: 2.7 Consensus size: 28
23838158 GACTTGTTGG
23838168 ATACTCTAGACTCTAGCTCGGAGGAGCA
1 ATACTCTAGACTCTAGCTCGGAGGAGCA
23838196 ATACTCTAGACTCTAGCTCGGAGGAGCA
1 ATACTCTAGACTCTAGCTCGGAGGAGCA
*
23838224 ATACTCTAGACTCTGGCTCG
1 ATACTCTAGACTCTAGCTCG
23838244 ATAAAAGTGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (28 bp):
ATACTCTAGACTCTAGCTCGGAGGAGCA
Found at i:23838289 original size:26 final size:25
Alignment explanation
Indices: 23838259--23838337 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 25
23838249 AGTGTTATTT
*
23838259 TGTCTAGGCTCCTATGAGCTAAACTC
1 TGTCTGGGCTCC-ATGAGCTAAACTC
* *
23838285 TGTCTGGGCTCGAATGAGTTAAACTC
1 TGTCTGGGCTC-CATGAGCTAAACTC
*
23838311 TATCTGGGCTCGCATGAGCTAAACTC
1 TGTCTGGGCTC-CATGAGCTAAACTC
23838337 T
1 T
23838338 ATTTTGGGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (25 bp):
TGTCTGGGCTCCATGAGCTAAACTC
Found at i:23838338 original size:26 final size:26
Alignment explanation
Indices: 23838272--23838348 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 26
23838262 CTAGGCTCCT
*
23838272 ATGAGCTAAACTCTGTCTGGGCTCGA
1 ATGAGCTAAACTCTATCTGGGCTCGA
* *
23838298 ATGAGTTAAACTCTATCTGGGCTCGC
1 ATGAGCTAAACTCTATCTGGGCTCGA
*
23838324 ATGAGCTAAACTCTATTTTGGGCTC
1 ATGAGCTAAACTCTA-TCTGGGCTC
23838349 AAAAAGAGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 37 0.82
27 8 0.18
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (26 bp):
ATGAGCTAAACTCTATCTGGGCTCGA
Found at i:23842831 original size:219 final size:223
Alignment explanation
Indices: 23842445--23842935 Score: 552
Period size: 219 Copynumber: 2.2 Consensus size: 223
23842435 TTTTTCTCAA
* * * * *
23842445 CTAGTTAATGATGATTATTGCCTAAGATTTTATTTGTTAAAGAGATTTTCCTTTTTCTTTTTCTG
1 CTAGTTAATGATGATTATTACCTAAGGTTTTATTTGTTAAAGAGATTTACCTTTTTCTTCTTCAG
* * *
23842510 CTTCAATATCTATTTAAATATAAGAACATTAAAGGTTGCAATGGAGGAAATAAATAATTACCCCA
66 CTTCAATATCTATTGAAATATAAGAACATTAAAGGTAGAAATGGAGGAAATAAATAATTACCCCA
* *
23842575 CTATGGGTCTAAAAATGCAAGTTTCTCTCAGCTAGTTAATAATGAAATAAATAATTGCAT-CATT
131 CTATGGGTCTAAAAAGGCAAGTTTCTCTCAGCTAGTTAATAATGAAATAAATAATTAC-TCCATT
**
23842639 GTAAGTTTGAAAAGAG-AAATTTTCCT-TT
195 GTAAGTTTGAAAAG-GCAAATTTTCCTCCG
* *
23842667 CTAGTTAATGATGATTATTACCTAAGGTTTTCTTTATTAAAGAGATTTACC-TTTT-TTCTTCAA
1 CTAGTTAATGATGATTATTACCTAAGGTTTTATTTGTTAAAGAGATTTACCTTTTTCTTCTTC-A
* * * * * * *
23842730 G-TT-AACTTTGTGTTGATATATAAG-ACATTAAAGGTAGAAATTGAGGAAATAAATAGTTACTC
65 GCTTCAA-TATCTATTGAAATATAAGAACATTAAAGGTAGAAATGGAGGAAATAAATAATTACCC
* * * *
23842792 CA-TGGTGGGTTTAAAAAGGCAAGTTT-TCCTCATCTAGTTAATGATGAAATAAATAATTACTCC
129 CACT-ATGGGTCTAAAAAGGCAAGTTTCT-CTCAGCTAGTTAATAATGAAATAAATAATTACTCC
** * *
23842855 ATTGTGGGTTTTAAAAGGCAAGTTTTCCTCCG
192 ATTGTAAGTTTGAAAAGGCAAATTTTCCTCCG
* * * *
23842887 CTAGTTAATGTTAATTATTACCCAAGGTTTTTTTTTGTTAAAGAGATTT
1 CTAGTTAATGATGATTATTACCTAAGG-TTTTATTTGTTAAAGAGATTT
23842936 TCATTTTCAT
Statistics
Matches: 227, Mismatches: 34, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
218 4 0.02
219 109 0.48
220 44 0.19
221 24 0.11
222 46 0.20
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (223 bp):
CTAGTTAATGATGATTATTACCTAAGGTTTTATTTGTTAAAGAGATTTACCTTTTTCTTCTTCAG
CTTCAATATCTATTGAAATATAAGAACATTAAAGGTAGAAATGGAGGAAATAAATAATTACCCCA
CTATGGGTCTAAAAAGGCAAGTTTCTCTCAGCTAGTTAATAATGAAATAAATAATTACTCCATTG
TAAGTTTGAAAAGGCAAATTTTCCTCCG
Found at i:23842872 original size:62 final size:62
Alignment explanation
Indices: 23842775--23842896 Score: 199
Period size: 62 Copynumber: 2.0 Consensus size: 62
23842765 AGAAATTGAG
* *
23842775 GAAATAAATAGTTACTCCATGGTGGGTTTAAAAAGGCAAGTTTTCCTCATCTAGTTAATGAT
1 GAAATAAATAATTACTCCATGGTGGGTTTAAAAAGGCAAGTTTTCCTCAGCTAGTTAATGAT
* * *
23842837 GAAATAAATAATTACTCCATTGTGGGTTTTAAAAGGCAAGTTTTCCTCCGCTAGTTAATG
1 GAAATAAATAATTACTCCATGGTGGGTTTAAAAAGGCAAGTTTTCCTCAGCTAGTTAATG
23842897 TTAATTATTA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (62 bp):
GAAATAAATAATTACTCCATGGTGGGTTTAAAAAGGCAAGTTTTCCTCAGCTAGTTAATGAT
Found at i:23843041 original size:223 final size:219
Alignment explanation
Indices: 23842553--23843061 Score: 548
Period size: 219 Copynumber: 2.3 Consensus size: 219
23842543 GGTTGCAATG
* * * * *
23842553 GAGGAAATAAATAATTACCCCACTATGGGTCTAAAAATGCAAG-TTTCTCTCAGCTAGTTAATAA
1 GAGGAAATAAATAATTACTCCACTATGGGTTTAAAAACGCAAGTTTTC-CTCAACTAGTTAATGA
* ** *
23842617 TGAAATAAATAATTGCATCATTGTAAGTTTGAAAAGAGAAATTTTCCTTTCTAGTTAATGATGAT
65 TGAAATAAATAATTACATCATTGTAAGTTTGAAAAGAGAAATTTTCCTCGCTAGTTAATGATAAT
* *
23842682 TATTACCTAAGGTTTTCTTTATTAAAGAGATTTACCTTTTTTCTTCAAGTTAACTTTGTGTTGAT
130 TATTACCCAAGGTTTTCTTTATTAAAGAGATTTACATTTTTTCTTCAAGTTAACTTTGTGTTGAT
* * * *
23842747 ATATAAGACATTAAAGGTAGAAATT
195 ATATAAGACAATAAAGATAAAAAAT
* * * *
23842772 GAGGAAATAAATAGTTACTCCA-TGGTGGGTTTAAAAAGGCAAGTTTTCCTCATCTAGTTAATGA
1 GAGGAAATAAATAATTACTCCACT-ATGGGTTTAAAAACGCAAGTTTTCCTCAACTAGTTAATGA
** * * *
23842836 TGAAATAAATAATTAC-TCCATTGTGGGTTTTAAAAG-GCAAGTTTTCCTCCGCTAGTTAATGTT
65 TGAAATAAATAATTACAT-CATTGTAAGTTTGAAAAGAG-AAATTTTCCT-CGCTAGTTAATGAT
* * * *
23842899 AATTATTACCCAAGGTTTTTTTTTGTTAAAGAGATTTTCATTTTCATT-TTC-TGTTTTAA-TTT
127 AATTATTACCCAAGG-TTTTCTTTATTAAAGAGATTTACATTTT--TTCTTCAAG--TTAACTTT
* * *
23842961 TTGTTTATATATAAGGACAATAATGATGAAAAAAT
187 GTGTTGATATATAA-GACAATAAAGAT-AAAAAAT
* * *
23842996 -AGGAAATAAATAATAACTCCACTATAGGTTTAAAAACGCAAGTTTTTCTCAACTAGTTAATGAT
1 GAGGAAATAAATAATTACTCCACTATGGGTTTAAAAACGCAAGTTTTCCTCAACTAGTTAATGAT
23843060 GA
66 GA
23843062 TTATTACCCA
Statistics
Matches: 241, Mismatches: 36, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
218 3 0.01
219 89 0.37
220 28 0.12
221 25 0.10
222 18 0.07
223 72 0.30
224 6 0.02
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.38
Consensus pattern (219 bp):
GAGGAAATAAATAATTACTCCACTATGGGTTTAAAAACGCAAGTTTTCCTCAACTAGTTAATGAT
GAAATAAATAATTACATCATTGTAAGTTTGAAAAGAGAAATTTTCCTCGCTAGTTAATGATAATT
ATTACCCAAGGTTTTCTTTATTAAAGAGATTTACATTTTTTCTTCAAGTTAACTTTGTGTTGATA
TATAAGACAATAAAGATAAAAAAT
Found at i:23843173 original size:158 final size:161
Alignment explanation
Indices: 23842838--23843205 Score: 440
Period size: 158 Copynumber: 2.3 Consensus size: 161
23842828 GTTAATGATG
* * * * * ** *
23842838 AAATAAATAATTACTCCATTGTGGGTTTTAAAAGGCAAGTTTTCCTCCGCTAGTTAATGTTAATT
1 AAATAAATAATTACTCCACTATAGGTTTAAAAACGCAAGTTTTCCTCAACTAGTTAATGATAATT
* ** * *
23842903 ATTACCCAAGGTTTTTTTTTGTTAAAGAGATTTTCATTTTCATTTTCTGTTTTAATTTTTGTTTA
66 ATTACCCAAGGTTTTTCTTTGTTAAAGAGATTTTCATTTTCATTTTCTACTTCAATTTCTGTTTA
* *
23842968 TATATAAGGACAATAATGATGAAAAAATAGG
131 TATATAAGGACAATAAAGATGAAAAAATAGA
* * *
23842999 AAATAAATAATAACTCCACTATAGGTTTAAAAACGCAAGTTTTTCTCAACTAGTTAATGATGATT
1 AAATAAATAATTACTCCACTATAGGTTTAAAAACGCAAGTTTTCCTCAACTAGTTAATGATAATT
*
23843064 ATTACCCAAGG-TTTTCTTTGTTAAAGAGATTTTC-TTTT-TTTTTCTACTTCAATTTCTGTTTA
66 ATTACCCAAGGTTTTTCTTTGTTAAAGAGATTTTCATTTTCATTTTCTACTTCAATTTCTGTTTA
* * *
23843126 TATATAAGGACATTAAAGGTGAAAATGA-AGA
131 TATATAAGGACAATAAAGATGAAAA-AATAGA
* *** *
23843157 AAATAAATAATTACTCCATTGCGGGTTT-AAAAGGACAAGTTTTCCTCAA
1 AAATAAATAATTACTCCACTATAGGTTTAAAAACG-CAAGTTTTCCTCAA
23843206 TTAATGATGA
Statistics
Matches: 176, Mismatches: 29, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
157 5 0.03
158 79 0.45
159 5 0.03
160 22 0.12
161 65 0.37
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.40
Consensus pattern (161 bp):
AAATAAATAATTACTCCACTATAGGTTTAAAAACGCAAGTTTTCCTCAACTAGTTAATGATAATT
ATTACCCAAGGTTTTTCTTTGTTAAAGAGATTTTCATTTTCATTTTCTACTTCAATTTCTGTTTA
TATATAAGGACAATAAAGATGAAAAAATAGA
Found at i:23843797 original size:157 final size:155
Alignment explanation
Indices: 23843605--23843966 Score: 410
Period size: 157 Copynumber: 2.3 Consensus size: 155
23843595 AGTTAATGAT
* ** * * *
23843605 GAAATAAACAATTACTCCACTGTAAGTTTAAAAAGGTAAGTTTTTCTCCAGTAGATAACCATGAT
1 GAAATAAATAATTACTCCACTGTTGGTTTAAAAAGG-AAGTTTTTCTCAACTAGATAACAATGAT
* *
23843670 TATTACCTAAAG-TTTTCTTTGTTAAAGAGATTTTCATTTT-TTTT-TGCTTCAGTTTCTGTTTA
65 TATTACC-AAAGATTTTCTATATTAAAGAGATTTTCATTTTCTTTTCTGCTTCAG--TCTGTTTA
*
23843732 TATATAGGGACATT-AA-TGGCAATAATGGA
127 TATATAAGGACATTAAAGTGGCAAT-A-GGA
* * * *
23843761 GGAAATAAATAATTACTCCACTGTTGGTTTAAAAAGGATAGTTTTCCTCAACTAGTTAATAATTA
1 -GAAATAAATAATTACTCCACTGTTGGTTTAAAAAGGA-AGTTTTTCTCAACTAGATAACAATGA
* * * *
23843826 TTATTACCCAAGATTTTCTATATTAAAGAGATTTTCCTTTTCTTTTCTGCTTCAGTCTTTTTCTA
64 TTATTACCAAAGATTTTCTATATTAAAGAGATTTTCATTTTCTTTTCTGCTTCAGTCTGTTTATA
*
23843891 TATAAGGACATTAAAGGTGGCAATAGTA
129 TATAAGGACATTAAA-GTGGCAATAGGA
* **
23843919 GAAATAAATAATTATTTTACTGTTGGTTTAAAAAGGCAAGTTTTTCTC
1 GAAATAAATAATTACTCCACTGTTGGTTTAAAAAGG-AAGTTTTTCTC
23843967 GGCTAATTAA
Statistics
Matches: 175, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
156 4 0.02
157 146 0.83
158 9 0.05
159 9 0.05
160 7 0.04
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (155 bp):
GAAATAAATAATTACTCCACTGTTGGTTTAAAAAGGAAGTTTTTCTCAACTAGATAACAATGATT
ATTACCAAAGATTTTCTATATTAAAGAGATTTTCATTTTCTTTTCTGCTTCAGTCTGTTTATATA
TAAGGACATTAAAGTGGCAATAGGA
Found at i:23844430 original size:161 final size:158
Alignment explanation
Indices: 23844171--23844526 Score: 371
Period size: 161 Copynumber: 2.2 Consensus size: 158
23844161 TCTACCGTGA
* * * * *
23844171 GTTTAAAAGGACAAGGTTTCCTT-ATCTAGTTAATGATGATTACTACCCAAGGTTTTATGTTTTA
1 GTTTAAAAAGACAA-GTTTTCTTCAACTAGTTAATGATGATTACTACACAAGATTTTATGTTTTA
* * *
23844235 AAGAGATTTCTCATTTTTCTTCTACTTTAATTTCTGTTTATATATATAAGGACATTAA-CAGCGG
65 AAGAGATTTCTCATTTTTCTTCTACTTCAATTTCT-ATT-TATATATAAGGACATTAATC--CGA
* * * *
23844299 CAATGGAGCAACTAAATATTTACTCTACTATGG
126 CAATGGAGCAAATAAATAATTACTCCACTATCG
* * * *
23844332 GTTTAAAAAGGA-AAGTTTT-TCTCAAGTAGTTAATGATGATTATTACACAATATTTTCT-TTGT
1 GTTTAAAAA-GACAAGTTTTCT-TCAACTAGTTAATGATGATTACTACACAAGATTTTATGTT-T
* * * * ** *
23844394 TAAATAGATTTTTCTTTTTTTTTCTGGTTCAATTTCTATTTATATATAAGGACATTAATCTGACA
63 TAAAGAGATTTCTCATTTTTCTTCTACTTCAATTTCTATTTATATATAAGGACATTAATCCGACA
*
23844459 ATGGAGGAAATAAATAATTACTCCACTATCG
128 ATGGAGCAAATAAATAATTACTCCACTATCG
**
23844490 GTTTCTAAAGACAAGTTTTCTTCAACTAGTTAATGAT
1 GTTTAAAAAGACAAGTTTTCTTCAACTAGTTAATGAT
23844527 AAAGTAAATA
Statistics
Matches: 161, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
157 2 0.01
158 58 0.36
159 20 0.12
160 10 0.06
161 69 0.43
162 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (158 bp):
GTTTAAAAAGACAAGTTTTCTTCAACTAGTTAATGATGATTACTACACAAGATTTTATGTTTTAA
AGAGATTTCTCATTTTTCTTCTACTTCAATTTCTATTTATATATAAGGACATTAATCCGACAATG
GAGCAAATAAATAATTACTCCACTATCG
Found at i:23844730 original size:222 final size:219
Alignment explanation
Indices: 23844333--23845228 Score: 922
Period size: 222 Copynumber: 4.1 Consensus size: 219
23844323 CTACTATGGG
* * * *
23844333 TTTAAAAAGGAAAGTTTTTCTCAAGTAGTTAATGATGATTATTACAC-AATATTTTCTTTGTTAA
1 TTTAAAAAGGTAAGTTTTTCTCAACTAGTAAATGATGATTATTACCCAAATATTTTCTTTGTTAA
* * * * *
23844397 ATAGATTTTTCTTTTTTTTTCTGGTTCAATTTCTATTTATATATAAGGACATT-AATCTGACAAT
66 AGAGATTTTCCTTTTTTTTT-TGTTTCAGTTTCT-TTTATATATAAGGACATTAAATGTGACAAT
* **
23844461 GGAGGAAATAAATAATTACTCCACTATCGGTTTCTAAAGACAAGTTTTCTTCAACTAGTTAATGA
129 GGAGGAAATAAATAATTACTCCACTGTCGGTTTAAAAAGACAAGTTTTCTTCAACTAGTTAATGA
* * *
23844526 TAAAGTAAATAATTATTTCATTGTGGT
194 TAAAATAAATAATTACTCCATTGT-GT
* * *
23844553 TTTTAAAAGGTAAG-TTTTCTCAGA-TAGTAAATGATGATTATTACCCAAGATTGTTTTTTTTGT
1 TTTAAAAAGGTAAGTTTTTCTCA-ACTAGTAAATGATGATTATTACCCAA-A-TATTTTCTTTGT
* * *
23844616 TAAAGATATTTTCCTTTATTTTTTTGTTTCAGTTT-TTTTCATATATATGGACATTAAAGGTGAC
63 TAAAGAGATTTTCCTTT-TTTTTTTGTTTCAGTTTCTTTT-ATATATAAGGACATTAAATGTGAC
* * * *
23844680 AATGGAGGAAATAAATAATTACTCCATTGTGGGTTTAAAAAGATAAGTTTTCTTCAGCTAGTTAA
126 AATGGAGGAAATAAATAATTACTCCACTGTCGGTTTAAAAAGACAAGTTTTCTTCAACTAGTTAA
* *
23844745 TGATGAAATATATAATTACTCCACTATGTGT
191 TGATAAAATAAATAATTACTCCA-T-TGTGT
* ** ** * * *
23844776 TTAAAAAAAATAAGTTTTTCTCAACTAGTTGATGATGATTATTA-TCAAATATTTTCGTTATTAA
1 TTTAAAAAGGTAAGTTTTTCTCAACTAGTAAATGATGATTATTACCCAAATATTTTCTTTGTTAA
* * * *
23844840 AGAGGTTTTCCTTTTTTTTTTGTGCTTCAGTTTCAGTTTATATATAAGGATATTAAATGTGGCAA
66 AGAGATTTTCCTTTTTTTTTTGT--TTCAGTTTC-TTTTATATATAAGGACATTAAATGTGACAA
*
23844905 TGGAGGAAATAAATAATT--T-CACTGTCGGTTTAAAAAGACAAATTTT-TCTCAACTAGTTAAT
128 TGGAGGAAATAAATAATTACTCCACTGTCGGTTTAAAAAGACAAGTTTTCT-TCAACTAGTTAAT
23844966 GATAAAATAAATAATTACTCCATTGTGT
192 GATAAAATAAATAATTACTCCATTGTGT
** * * * * **
23844994 GTTTAAAAAGACAAG-TTTTCTTCGATTAATAAATTATGATTATTACCC-AAGGTTTTCTTTGTT
1 -TTTAAAAAGGTAAGTTTTTC-TCAACTAGTAAATGATGATTATTACCCAAATATTTTCTTTGTT
* * * * * ** * *
23845057 AAAGTGATTGTCCTTTTTTTAACTTCTTT-AGTTTTTGTTTATATATTTGGATATTAAAAGTGAC
64 AAAGAGATTTTCCTTTTTTT--TTTGTTTCAGTTTCT-TTTATATATAAGGACATTAAATGTGAC
* * *
23845121 AATGGAGGAAATAAATAATTACTCCACCGTGGGTTTTAAAAAG-CAAGTGTTTC-TAAACTAGTT
126 AATGGAGGAAATAAATAATTACTCCACTGTCGG-TTTAAAAAGACAAGT-TTTCTTCAACTAGTT
* *
23845184 AATGATAAAATAAAAAATTACTCCATTGTGGA
189 AATGATAAAATAAATAATTACTCCATTGT-GT
*
23845216 TTTAAAAATGTAA
1 TTTAAAAAGGTAA
23845229 AATTTCCTCT
Statistics
Matches: 562, Mismatches: 85, Indels: 57
0.80 0.12 0.08
Matches are distributed among these distances:
218 58 0.10
219 89 0.16
220 83 0.15
221 101 0.18
222 137 0.24
223 63 0.11
224 31 0.06
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (219 bp):
TTTAAAAAGGTAAGTTTTTCTCAACTAGTAAATGATGATTATTACCCAAATATTTTCTTTGTTAA
AGAGATTTTCCTTTTTTTTTTGTTTCAGTTTCTTTTATATATAAGGACATTAAATGTGACAATGG
AGGAAATAAATAATTACTCCACTGTCGGTTTAAAAAGACAAGTTTTCTTCAACTAGTTAATGATA
AAATAAATAATTACTCCATTGTGT
Found at i:23844813 original size:63 final size:62
Alignment explanation
Indices: 23844687--23844813 Score: 166
Period size: 63 Copynumber: 2.0 Consensus size: 62
23844677 GACAATGGAG
* * * *
23844687 GAAATAAATAATTACTCCATTGTGGGTTTAAAAAGATAAGTTTTCTTCAGCTAGTTAATGAT
1 GAAATAAATAATTACTCCACTATGGGTTTAAAAAAATAAGTTTTCTTCAACTAGTTAATGAT
* * *
23844749 GAAATATATAATTACTCCACTATGTGTTTAAAAAAAATAAGTTTT-TCTCAACTAGTTGATGAT
1 GAAATAAATAATTACTCCACTATGGGTTT-AAAAAAATAAGTTTTCT-TCAACTAGTTAATGAT
23844812 GA
1 GA
23844814 TTATTATCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
62 26 0.46
63 30 0.54
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (62 bp):
GAAATAAATAATTACTCCACTATGGGTTTAAAAAAATAAGTTTTCTTCAACTAGTTAATGAT
Found at i:23844979 original size:442 final size:439
Alignment explanation
Indices: 23844318--23845223 Score: 1129
Period size: 442 Copynumber: 2.1 Consensus size: 439
23844308 AACTAAATAT
* ** *
23844318 TTACTCTACTATGGGTTTAAAAAGGAAAGTTTTTCTCAAGTAGTTAATGATGATTATTACACAAT
1 TTACTCCACTATGGGTTTAAAAAAAAAAGTTTTTCTCAACTAGTTAATGATGATTATTACACAAT
* * * *
23844383 ATTTTCTTTGTTAAATAGATTTTTCTTTTTTTTTCTGGTTCAATTTCTATTTATATATAAGGACA
66 ATTTTCGTTATTAAAGAGATTTTCCTTTTTTTTTCTGGTTCAATTTCTATTTATATATAAGGACA
**
23844448 TTAATCTGACAATGGAGGAAATAAATAATTACTCCACTATCGGTTTCTAAAGACAAGTTTTCTTC
131 TTAATCTGACAATGGAGGAAATAAATAATTA-TCCACTATCGGTTTAAAAAGACAAGTTTTCTTC
* * * * **
23844513 AACTAGTTAATGATAAAGTAAATAATTATTTCATTGTG-GTTTTTAAAAGGTAAGTTTTC-TCAG
195 AACTAGTTAATGATAAAATAAATAATTACTCCATTGTGTG-TTTAAAAAGACAAGTTTTCTTC-G
* * *
23844576 A-TAGTAAATGATGATTATTACCCAAGATTGTTTTTTTTGTTAAAGAT-ATTTTCCTTTATTTT-
258 ATTAATAAATGATGATTATTACCCAAG---GTTTTCTTTGTTAAAG-TGATTGTCCTTT-TTTTA
* * *
23844638 TTTGTTTCAGTTTTT-TTCATATATATGGACATTAAAGGTGACAATGGAGGAAATAAATAATTAC
318 CTTCTTT-AGTTTTTGTTCATATATATGGACATTAAAAGTGACAATGGAGGAAATAAATAATTAC
** * * * * * *
23844702 TCCATTGTGGG-TTTAAAAAGATAAGT-TTTCTTCAGCTAGTTAATGATGAAATATATAA
382 TCCACCGTGGGTTTTAAAAAG-CAAGTGTTTC-TAAACTAGTTAATGATAAAATAAAAAA
* *
23844760 TTACTCCACTATGTGTTTAAAAAAAATAAGTTTTTCTCAACTAGTTGATGATGATTATTATCA-A
1 TTACTCCACTATGGGTTTAAAAAAAA-AAGTTTTTCTCAACTAGTTAATGATGATTATTA-CACA
* *
23844824 ATATTTTCGTTATTAAAGAGGTTTTCCTTTTTTTTT-TGTGCTTCAGTTTC-AGTTTATATATAA
64 ATATTTTCGTTATTAAAGAGATTTTCCTTTTTTTTTCTG-G-TTCAATTTCTA-TTTATATATAA
* * * * *
23844887 GGATATTAAATGTGGCAATGGAGGAAATAAATAATT-T-CACTGTCGGTTTAAAAAGACAAATTT
126 GGACATT-AATCTGACAATGGAGGAAATAAATAATTATCCACTATCGGTTTAAAAAGACAAGTTT
23844950 T-TCTCAACTAGTTAATGATAAAATAAATAATTACTCCATTGTGTGTTTAAAAAGACAAGTTTTC
190 TCT-TCAACTAGTTAATGATAAAATAAATAATTACTCCATTGTGTGTTTAAAAAGACAAGTTTTC
*
23845014 TTCGATTAATAAATTATGATTATTACCCAAGGTTTTCTTTGTTAAAGTGATTGTCCTTTTTTTAA
254 TTCGATTAATAAATGATGATTATTACCCAAGGTTTTCTTTGTTAAAGTGATTGTCCTTTTTTT-A
* * *
23845079 CTTCTTTAGTTTTTGTTTATATATTTGGATATTAAAAGTGACAATGGAGGAAATAAATAATTACT
318 CTTCTTTAGTTTTTGTTCATATATATGGACATTAAAAGTGACAATGGAGGAAATAAATAATTACT
23845144 CCACCGTGGGTTTTAAAAAGCAAGTGTTTCTAAACTAGTTAATGATAAAATAAAAAA
383 CCACCGTGGGTTTTAAAAAGCAAGTGTTTCTAAACTAGTTAATGATAAAATAAAAAA
* * *
23845201 TTACTCCATTGTGGATTTAAAAA
1 TTACTCCACTATGGGTTTAAAAA
23845224 TGTAAAATTT
Statistics
Matches: 401, Mismatches: 47, Indels: 33
0.83 0.10 0.07
Matches are distributed among these distances:
439 5 0.01
440 31 0.08
441 105 0.26
442 115 0.29
443 92 0.23
444 27 0.07
445 26 0.06
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (439 bp):
TTACTCCACTATGGGTTTAAAAAAAAAAGTTTTTCTCAACTAGTTAATGATGATTATTACACAAT
ATTTTCGTTATTAAAGAGATTTTCCTTTTTTTTTCTGGTTCAATTTCTATTTATATATAAGGACA
TTAATCTGACAATGGAGGAAATAAATAATTATCCACTATCGGTTTAAAAAGACAAGTTTTCTTCA
ACTAGTTAATGATAAAATAAATAATTACTCCATTGTGTGTTTAAAAAGACAAGTTTTCTTCGATT
AATAAATGATGATTATTACCCAAGGTTTTCTTTGTTAAAGTGATTGTCCTTTTTTTACTTCTTTA
GTTTTTGTTCATATATATGGACATTAAAAGTGACAATGGAGGAAATAAATAATTACTCCACCGTG
GGTTTTAAAAAGCAAGTGTTTCTAAACTAGTTAATGATAAAATAAAAAA
Found at i:23845269 original size:221 final size:217
Alignment explanation
Indices: 23844331--23845361 Score: 876
Period size: 221 Copynumber: 4.7 Consensus size: 217
23844321 CTCTACTATG
* * * **
23844331 GGTTTAAAAAGGAAAGTTTTTCTCA-AGTAGTTAATGATGATTATTACACAATATTTTCTTTGTT
1 GGTTTAAAAAGTAAAG-TTTTCTCAGA-TAATAAATGATGATTATTACACAAGGTTTTCTTTGTT
* * * * * * **
23844395 AAA-TAGATTTTTC-TTTTTTTTTCTGGTTCAATTTCTATTTATATATAAGGACATT-AATCTGA
64 AAAGT-GATTTTCCTTTTTTTTTTCT--TT-AGTTTTTGTTTATATATATGGATATTAAAAGTGA
* **
23844457 CAATGGAGGAAATAAATAATTACTCCACTATCGGTTTCTAAAGACAAGTTTTCTTCAACTAGTTA
125 CAATGGAGGAAATAAATAATTACTCCACTGTCGGTTTAAAAAGACAAGTTTTCTTCAACTAGTTA
* * *
23844522 ATGATAAAGTAAATAATTATTTCATTGT
190 ATGATAAAATAAATAATTACTCCATTGT
* * * *
23844550 GGTTTTTAAAAGGT-AAGTTTTCTCAGATAGTAAATGATGATTATTACCCAAGATTGTTTTTTTT
1 GG--TTTAAAAAGTAAAGTTTTCTCAGATAATAAATGATGATTATTACACAAG---GTTTTCTTT
* * * *
23844614 GTTAAAGAT-ATTTTCCTTTATTTTTTTGTTTCAGTTTTT-TTCATATATATGGACATTAAAGGT
61 GTTAAAG-TGATTTTCCTTT-TTTTTTTCTTT-AGTTTTTGTTTATATATATGGATATTAAAAGT
* * * *
23844677 GACAATGGAGGAAATAAATAATTACTCCATTGTGGGTTTAAAAAGATAAGTTTTCTTCAGCTAGT
123 GACAATGGAGGAAATAAATAATTACTCCACTGTCGGTTTAAAAAGACAAGTTTTCTTCAACTAGT
* *
23844742 TAATGATGAAATATATAATTACTCCACTATGT
188 TAATGATAAAATAAATAATTACTCCA-T-TGT
** * ** ** * *
23844774 -GTTTAAAAAAAATAAGTTTTTCTCA-ACTAGTTGATGATGATTATTATCA-AATATTTTCGTTA
1 GGTTTAAAAAGTA-AAG-TTTTCTCAGA-TAATAAATGATGATTATTA-CACAAGGTTTTCTTTG
* * * ** * *
23844836 TTAAAGAGGTTTTCCTTTTTTTTTTGTGCTTCAGTTTCAGTTTATATATAAGGATATTAAATGTG
62 TTAAAGTGATTTTCC-TTTTTTTTT-T-CTTTAGTTTTTGTTTATATATATGGATATTAAAAGTG
* *
23844901 GCAATGGAGGAAATAAATAATT--T-CACTGTCGGTTTAAAAAGACAAATTTT-TCTCAACTAGT
124 ACAATGGAGGAAATAAATAATTACTCCACTGTCGGTTTAAAAAGACAAGTTTTCT-TCAACTAGT
23844962 TAATGATAAAATAAATAATTACTCCATTGT
188 TAATGATAAAATAAATAATTACTCCATTGT
* *
23844992 GTGTTTAAAAAG-ACAAGTTTTCTTC-GATTAATAAATTATGATTATTACCCAAGGTTTTCTTTG
1 G-GTTTAAAAAGTA-AAGTTTTC-TCAGA-TAATAAATGATGATTATTACACAAGGTTTTCTTTG
* * *
23845055 TTAAAGTGATTGTCCTTTTTTTAACTTCTTTAGTTTTTGTTTATATATTTGGATATTAAAAGTGA
62 TTAAAGTGATTTTCCTTTTTTT--TTTCTTTAGTTTTTGTTTATATATATGGATATTAAAAGTGA
* * *
23845120 CAATGGAGGAAATAAATAATTACTCCACCGTGGGTTTTAAAAAG-CAAGTGTTTC-TAAACTAGT
125 CAATGGAGGAAATAAATAATTACTCCACTGTCGG-TTTAAAAAGACAAGT-TTTCTTCAACTAGT
*
23845183 TAATGATAAAATAAAAAATTACTCCATTGT
188 TAATGATAAAATAAATAATTACTCCATTGT
* * * * * * *
23845213 GGATTTAAAAATGTAAAATTTCCTCTGGTAATTAATGATTATTATTACATAAGGTTTTCTTTGTT
1 GG-TTTAAAAA-GTAAAGTTTTCTCAGATAATAAATGATGATTATTACACAAGGTTTTCTTTGTT
* * * * * * * * * **
23845278 AAAGAGAATTTT-CTATTCTTTCTACTTTAATTTTTGTTTCTATATAAGGACATTAACAGAAACA
64 AAAGTG-ATTTTCCT-TTTTTTTTTCTTTAGTTTTTGTTTATATATATGGATATTAAAAGTGACA
** *
23845342 ATAAAGTAAATAAATAATTA
127 ATGGAGGAAATAAATAATTA
23845362 GTTTTCCTAA
Statistics
Matches: 662, Mismatches: 107, Indels: 85
0.78 0.13 0.10
Matches are distributed among these distances:
218 68 0.10
219 78 0.12
220 122 0.18
221 154 0.23
222 147 0.22
223 53 0.08
224 39 0.06
225 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.42
Consensus pattern (217 bp):
GGTTTAAAAAGTAAAGTTTTCTCAGATAATAAATGATGATTATTACACAAGGTTTTCTTTGTTAA
AGTGATTTTCCTTTTTTTTTTCTTTAGTTTTTGTTTATATATATGGATATTAAAAGTGACAATGG
AGGAAATAAATAATTACTCCACTGTCGGTTTAAAAAGACAAGTTTTCTTCAACTAGTTAATGATA
AAATAAATAATTACTCCATTGT
Found at i:23846868 original size:19 final size:19
Alignment explanation
Indices: 23846844--23846902 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
23846834 AAGCTAGTTA
23846844 TATGTTATGCGAACTCTTT
1 TATGTTATGCGAACTCTTT
*
23846863 TATGTTATGTGAACTCTTT
1 TATGTTATGCGAACTCTTT
* *
23846882 TACATGATATGCAAACTCTTT
1 T--ATGTTATGCGAACTCTTT
23846903 CACATGTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 19 0.56
21 15 0.44
ACGTcount: A:0.25, C:0.15, G:0.14, T:0.46
Consensus pattern (19 bp):
TATGTTATGCGAACTCTTT
Found at i:23846898 original size:21 final size:21
Alignment explanation
Indices: 23846849--23846908 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
23846839 AGTTATATGT
*
23846849 TATGCGAACTCTTTT--ATGT
1 TATGCGAACTCTTTTACATGA
*
23846868 TATGTGAACTCTTTTACATGA
1 TATGCGAACTCTTTTACATGA
* *
23846889 TATGCAAACTCTTTCACATG
1 TATGCGAACTCTTTTACATG
23846909 TTGTGTGAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 14 0.41
21 20 0.59
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (21 bp):
TATGCGAACTCTTTTACATGA
Found at i:23847540 original size:31 final size:31
Alignment explanation
Indices: 23847498--23847561 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
23847488 TAAACCATTA
* *
23847498 TTGTCGGTCAATTCAGGGTCGTAGGCCATCG
1 TTGTCGATCAATCCAGGGTCGTAGGCCATCG
*
23847529 TTGTCGATCAATCCAGGGTGGTAGGCCATCG
1 TTGTCGATCAATCCAGGGTCGTAGGCCATCG
23847560 TT
1 TT
23847562 ACCAAGCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.17, C:0.22, G:0.31, T:0.30
Consensus pattern (31 bp):
TTGTCGATCAATCCAGGGTCGTAGGCCATCG
Found at i:23847572 original size:31 final size:31
Alignment explanation
Indices: 23847506--23847607 Score: 105
Period size: 31 Copynumber: 3.3 Consensus size: 31
23847496 TATTGTCGGT
* * * *
23847506 CAATTCAGGGTCGTAGGCCATCGTTGTCGAT
1 CAATCCAGGGTGGTAGGCCATCGTTGCCGAG
* *
23847537 CAATCCAGGGTGGTAGGCCATCGTTACCAAG
1 CAATCCAGGGTGGTAGGCCATCGTTGCCGAG
* * * *
23847568 CAATCCAAGGTGATAGGTCACCGTTGCCGAG
1 CAATCCAGGGTGGTAGGCCATCGTTGCCGAG
*
23847599 CAATTCAGG
1 CAATCCAGG
23847608 ATGACAGATT
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 57 1.00
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (31 bp):
CAATCCAGGGTGGTAGGCCATCGTTGCCGAG
Found at i:23847889 original size:14 final size:14
Alignment explanation
Indices: 23847822--23847958 Score: 62
Period size: 14 Copynumber: 9.4 Consensus size: 14
23847812 AAAATGCTTA
*
23847822 TATGTGAACTGGTTA
1 TATGTGAACT-GTTG
* *
23847837 TATGCGAACTTATTG
1 TATGTGAAC-TGTTG
** * *
23847852 TATGCAAACCGCTG
1 TATGTGAACTGTTG
**
23847866 TATGCAAACTGTTG
1 TATGTGAACTGTTG
*
23847880 TATGTGAACTGATCG
1 TATGTGAACTG-TTG
*
23847895 TATGTGAACTATTG
1 TATGTGAACTGTTG
* *
23847909 TATGCGAACTATT-
1 TATGTGAACTGTTG
23847922 TATGTGTAAGCTGTTTGG
1 TATGTG-AA-CTG-TT-G
* *
23847940 TATTTGAATTGTTG
1 TATGTGAACTGTTG
23847954 -ATGTG
1 TATGTG
23847959 TTTCCTAGTG
Statistics
Matches: 95, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
13 9 0.09
14 40 0.42
15 34 0.36
16 5 0.05
17 2 0.02
18 5 0.05
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (14 bp):
TATGTGAACTGTTG
Found at i:23848811 original size:62 final size:62
Alignment explanation
Indices: 23848691--23848816 Score: 139
Period size: 62 Copynumber: 2.0 Consensus size: 62
23848681 GGCAATAAAG
* * ** * *
23848691 GAAATAAATAATTACTCCACTGTGTGTTTAAAAATGCAAGTCTTCCTCAACTTATTAATGAT
1 GAAATAAACAATTACTCCACTATGTACTTAAAAAGGCAAGTCTTCCTCAACTTATTAATCAT
* * *
23848753 GAAATAAACAATTACTCCACTATAG-ACTTAAAAAGGCAAGTTTTTCTCAGC-TAGTTAATCAT
1 GAAATAAACAATTACTCCACTAT-GTACTTAAAAAGGCAAGTCTTCCTCAACTTA-TTAATCAT
23848815 GA
1 GA
23848817 TTGTTACCCA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
61 2 0.04
62 50 0.94
63 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.33
Consensus pattern (62 bp):
GAAATAAACAATTACTCCACTATGTACTTAAAAAGGCAAGTCTTCCTCAACTTATTAATCAT
Found at i:23849656 original size:3 final size:3
Alignment explanation
Indices: 23849650--23849699 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
23849640 ATTATTATTT
* *
23849650 TTC TTC TTC TTC TTC TTG TTC TTC TTG TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
23849698 TT
1 TT
23849700 ATTATTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.00, C:0.28, G:0.04, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:23850561 original size:146 final size:141
Alignment explanation
Indices: 23850128--23850620 Score: 566
Period size: 148 Copynumber: 3.4 Consensus size: 141
23850118 TTATTACACA
* * * *
23850128 ATTTTGAAATAAAAACTTTGATTTTTTTAAGCAAAATAGTGATTTTCTTTAAAAATGAGAAAGTT
1 ATTTCGAAATAAAAATTTTGA--TTTTTAAGCAAAATAGTGATTTTTTTTAAAAAAGAGAAAGTT
23850193 TAGATTTTTAAAAATAAAAATCTGTTTTTTAGTTATTTTAAA-AAAAAGTTTAAATTTTTAACAA
64 TAGATTTTTAAAAATAAAAATCT-TTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAAC-A
23850257 AGTTTTGATTTTTTTTTAACT
127 A------ATTTTTTTTTAACT
* * * *
23850278 ATTTCGAAATAAAAGTTTGGATTTTT-AGATAAAATAGTGATTTTTTTTAAAAAAGAGAAGGTTT
1 ATTTCGAAATAAAAATTTTGATTTTTAAG-CAAAATAGTGATTTTTTTTAAAAAAGAGAAAGTTT
* *
23850342 ATATTTTTAAAAAT-ACAAT-TTTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAACAAAG
65 AGATTTTTAAAAATAAAAATCTTTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAACAAA-
*
23850405 TTTTGATTTTTTCTAAGT
129 --TT--TTTTTT-TAACT
23850423 ATTTCGAAATAAAAATTTTGATTTTTAAGCAAAATAGTGATTTTATTTTAAAAAAAAGAGAAAGT
1 ATTTCGAAATAAAAATTTTGATTTTTAAGCAAAATAGTGATTTT-TTTT--AAAAAAGAGAAAGT
23850488 TTAGATTGTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGAAAAA-TTTAAATTTTTAA
63 TTAGA-T-TTTTAAAAATAAAAATCT-TTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAA
23850552 CAAATTTTTTTTTAAACT
125 CAAATTTTTTTTT-AACT
* * ** *
23850570 ATTTCGAAAT-AAAAGTTTGAATTTTAAAGTGAAGTAGTGATTTTTGTTTAA
1 ATTTCGAAATAAAAATTTTG-ATTTTTAAGCAAAATAGTGATTTTT-TTTAA
23850621 TCAAATGAAA
Statistics
Matches: 300, Mismatches: 23, Indels: 45
0.82 0.06 0.12
Matches are distributed among these distances:
139 1 0.00
142 2 0.01
144 6 0.02
145 64 0.21
146 37 0.12
147 48 0.16
148 66 0.22
149 3 0.01
150 27 0.09
151 4 0.01
152 18 0.06
153 24 0.08
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (141 bp):
ATTTCGAAATAAAAATTTTGATTTTTAAGCAAAATAGTGATTTTTTTTAAAAAAGAGAAAGTTTA
GATTTTTAAAAATAAAAATCTTTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAACAAATT
TTTTTTTAACT
Found at i:23851239 original size:21 final size:21
Alignment explanation
Indices: 23851205--23851256 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
23851195 ATTGTATATT
* *
23851205 TTTTATTTATTTTTATTTCATA
1 TTTTATTTACTTTTATGTC-TA
23851227 TTTT-TTTACTTTTATGTCTA
1 TTTTATTTACTTTTATGTCTA
23851247 TTTATATTTA
1 TTT-TATTTA
23851257 TGTTTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 5 0.19
21 13 0.50
22 8 0.31
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTATTTACTTTTATGTCTA
Found at i:23864191 original size:42 final size:42
Alignment explanation
Indices: 23864132--23864746 Score: 766
Period size: 42 Copynumber: 14.5 Consensus size: 42
23864122 AAAAAAAGCA
* *
23864132 TTCATTGCATTTAGAGGCCTAGGTGTAGACGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* ** *
23864174 TTCATTGCATTTAGAGGCCCAAATGTGG-GG-CCTGTTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCC-ATTTACTT
* * *
23864215 TTCATCGCATTTAGAGGCCCAGGTGTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
** * * * * *
23864257 TTCATCACATTTAGAGGCCCATGTGTGAAGGCCCATTTACAT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
*
23864299 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * * *
23864341 TTCAGTCCATTCAGAGGCCTAGGTGTGGAGGTCTATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23864383 TTCATTGCATTCAGAGGCCTAGGTGTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * *
23864425 TTCATTGCATTCAGAGGCCTAAGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
** * *
23864467 TTCATCACATTTAGAGGCCCAGGTGTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
*
23864509 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTAC-TT
23864552 TCATCGCATTTCGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
1 T--T--CA-TT-GCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
** *
23864600 TTCATTGCATTTAGATTCCTAGGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23864642 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTATTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
** *
23864684 TTCATTGCATTCGGAGGCCTAGGTGTGGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
23864726 TTAATTGCAATTAGAGGCCTA
1 TTCATTGCATTTAGAGGCCTA
23864747 AGCATAGAGG
Statistics
Matches: 498, Mismatches: 65, Indels: 20
0.85 0.11 0.03
Matches are distributed among these distances:
40 2 0.00
41 32 0.06
42 413 0.83
43 7 0.01
44 2 0.00
45 1 0.00
46 1 0.00
47 2 0.00
48 5 0.01
49 33 0.07
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
Found at i:23864765 original size:84 final size:84
Alignment explanation
Indices: 23864585--23864767 Score: 231
Period size: 84 Copynumber: 2.2 Consensus size: 84
23864575 CCTAGGTGTG
* * ** *
23864585 GAGGTCCATTTACTTTTCATTGCATTTAGATTCCTAGGTGTGGAGGCCCATTTACTTTTCATTGC
1 GAGGTCCATTTATTTTTCATTGCATTCAGAGGCCTAGGTGTGGAGGCCCATTTACTTTTAATTGC
* * ** *
23864650 ATTTAGAGGCCCAGGTGTG
66 AATTAGAGGCCCAAGCATA
* * *
23864669 GAGGTCCATTTATTTTTCATTGCATTCGGAGGCCTAGGTGTGGAGGTCTATTTACTTTTAATTGC
1 GAGGTCCATTTATTTTTCATTGCATTCAGAGGCCTAGGTGTGGAGGCCCATTTACTTTTAATTGC
*
23864734 AATTAGAGGCCTAAGCATA
66 AATTAGAGGCCCAAGCATA
*
23864753 GAGGTCGATTTATTT
1 GAGGTCCATTTATTT
23864768 ATTTATTTAT
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.38
Consensus pattern (84 bp):
GAGGTCCATTTATTTTTCATTGCATTCAGAGGCCTAGGTGTGGAGGCCCATTTACTTTTAATTGC
AATTAGAGGCCCAAGCATA
Found at i:23865774 original size:49 final size:50
Alignment explanation
Indices: 23865712--23866072 Score: 155
Period size: 51 Copynumber: 7.3 Consensus size: 50
23865702 TAAAAATCTG
** *
23865712 TTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAACAAAGTTTTGA-
1 TTTTTTAACTATTTTAAAGAAAAAGTTTAAATTTTTAACAAAATTTTGAT
* * ** **
23865761 TTTTTTAACTATTTCGAAATAAAAA-TTTAAA-TTTTAGGTAAAATAGTGAT
1 TTTTTTAACTATTT-TAAAGAAAAAGTTTAAATTTTTA-ACAAAATTTTGAT
* * * * *
23865811 TTTCTTTAA--A----AAAGAGAAAGTTTATATTTTTAAAAATAAAAATCT-A-
1 TTT-TTTAACTATTTTAAAGAAAAAGTTTAAATTTTT---AACAAAATTTTGAT
** *
23865857 TTTTTTAGTTATTTTAAAGAAAAAGTTTAAATTTTTAACAAAGTTTTGAT
1 TTTTTTAACTATTTTAAAGAAAAAGTTTAAATTTTTAACAAAATTTTGAT
* * ** **
23865907 TTTTTCTAACTATTTCGAAA-TAAAAGTTTGGATTTTTAAGCAAAATGATGAT
1 TTTTT-TAACTATTT-TAAAGAAAAAGTTTAAATTTTTAA-CAAAATTTTGAT
* * * ****
23865959 TTTCTTTAA--A---AAAAGAGAAAG-TTAAGATTTTTAAAAAAATAAAAAT
1 TTT-TTTAACTATTTTAAAGAAAAAGTTTAA-ATTTTTAACAAAATTTTGAT
** ** *
23866005 CTGTTTTTCAGTTATTTTAAAGAAAAAGTTTAAATTTTTAACAATGTTCTGAT
1 -T-TTTTT-AACTATTTTAAAGAAAAAGTTTAAATTTTTAACAAAATTTTGAT
23866058 TTTTTTAACTATTTT
1 TTTTTTAACTATTTT
23866073 GAAATATAAG
Statistics
Matches: 227, Mismatches: 53, Indels: 63
0.66 0.15 0.18
Matches are distributed among these distances:
44 7 0.03
45 9 0.04
46 20 0.09
47 18 0.08
48 21 0.09
49 28 0.12
50 25 0.11
51 52 0.23
52 19 0.08
53 24 0.11
54 4 0.02
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (50 bp):
TTTTTTAACTATTTTAAAGAAAAAGTTTAAATTTTTAACAAAATTTTGAT
Found at i:23866118 original size:151 final size:147
Alignment explanation
Indices: 23865610--23866111 Score: 706
Period size: 145 Copynumber: 3.4 Consensus size: 147
23865600 TTGTTTTGGT
* * **
23865610 TTTTTTTAAACAATTTCAAAATAAAAGCTTT-GATTTTTTTTAAGCGAAATAGTGATTTTCTTTA
1 TTTTTTT-AACTATTTCGAAATAAAAG-TTTGGA---TTTTTAAGTAAAATAGTGATTTTCTTTA
* *
23865674 AAAATGAGAAAGTTTAGATTTTTAAAACTAAAAATCTGTTTTTTAGTTATTTTAAAGAAAAAGTT
61 AAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATCTGTTTTTTAGTTATTTTAAAGAAAAAGTT
23865739 TAAATTTTTAACAAAGTTTTGA
126 TAAATTTTTAACAAAGTTTTGA
* * * *
23865761 -TTTTTTAACTATTTCGAAATAAAAATTT-AAATTTTAGGTAAAATAGTGATTTTCTTTAAAAAA
1 TTTTTTTAACTATTTCGAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAA
* *
23865824 GAGAAAGTTTATATTTTTAAAAATAAAAATCTATTTTTTAGTTATTTTAAAGAAAAAGTTTAAAT
66 GAGAAAGTTTAGATTTTTAAAAATAAAAATCTGTTTTTTAGTTATTTTAAAGAAAAAGTTTAAAT
23865889 TTTTAACAAAGTTTTGA
131 TTTTAACAAAGTTTTGA
*
23865906 TTTTTTCTAACTATTTCGAAATAAAAGTTTGGATTTTTAAGCAAAAT-GATGATTTTCTTTAAAA
1 TTTTTT-TAACTATTTCGAAATAAAAGTTTGGATTTTTAAGTAAAATAG-TGATTTTCTTT-AAA
* *
23865970 AAAGAGAAAGTTAAGATTTTTAAAAAAATAAAAATCTGTTTTTCAGTTATTTTAAAGAAAAAGTT
63 AAAGAGAAAGTTTAGATTTTT--AAAAATAAAAATCTGTTTTTTAGTTATTTTAAAGAAAAAGTT
* *
23866035 TAAATTTTTAACAATGTTCTGA
126 TAAATTTTTAACAAAGTTTTGA
* * *
23866057 TTTTTTTAACTATTTTGAAATATAAGTTTGGATTTTTAAGTAAAGTAGTGATTTT
1 TTTTTTTAACTATTTCGAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATTTT
23866112 TGTTTAATCA
Statistics
Matches: 316, Mismatches: 27, Indels: 17
0.88 0.08 0.05
Matches are distributed among these distances:
145 107 0.34
146 5 0.02
147 23 0.07
148 27 0.09
149 38 0.12
150 49 0.16
151 67 0.21
ACGTcount: A:0.40, C:0.05, G:0.11, T:0.44
Consensus pattern (147 bp):
TTTTTTTAACTATTTCGAAATAAAAGTTTGGATTTTTAAGTAAAATAGTGATTTTCTTTAAAAAA
GAGAAAGTTTAGATTTTTAAAAATAAAAATCTGTTTTTTAGTTATTTTAAAGAAAAAGTTTAAAT
TTTTAACAAAGTTTTGA
Found at i:23867567 original size:239 final size:239
Alignment explanation
Indices: 23867148--23867623 Score: 862
Period size: 239 Copynumber: 2.0 Consensus size: 239
23867138 AATCATAATA
23867148 ATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTTTT
1 ATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTTTT
23867213 AGGCTTTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATTTTACTAGAATTA
66 AGGCTTTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATTTTACTAGAATTA
*
23867278 TTTAGGTATCCTTTAGGGTTCTTATCAGGAGTAAAAGTATCTAATTTAAGTTTTAAATTAGATAA
131 TTTAGGTATCCTTTAGGGTTCTTATCAGGAGTAAAAATATCTAATTTAAGTTTTAAATTAGATAA
* *** *
23867343 GTTTAGTGAATACGTTTTAGTCAAGTTACAAGTAAATCGGAGTG
196 GTTTAGTGAACACAACTTAGTCAAATTACAAGTAAATCGGAGTG
23867387 ATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTTTT
1 ATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTTTT
23867452 AGGCTTTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATTTTACTAGAATTA
66 AGGCTTTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATTTTACTAGAATTA
* *
23867517 TTTAGGTATCCTTTAGGGTTCTTATTAGGAGTAAAAATCTCTAATTTAAGTTTTAAATTAGATAA
131 TTTAGGTATCCTTTAGGGTTCTTATCAGGAGTAAAAATATCTAATTTAAGTTTTAAATTAGATAA
* *
23867582 GTTTGGTGAACACAACTTAGTCAAATTACAAGTAAATTGGAG
196 GTTTAGTGAACACAACTTAGTCAAATTACAAGTAAATCGGAG
23867624 GCATTTTTTA
Statistics
Matches: 227, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
239 227 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (239 bp):
ATGATAAAAGATCGAATAAGTTGTAGATGAATTTTAATATTTCTCTTAATTCATTAGTAACTTTT
AGGCTTTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATTTTACTAGAATTA
TTTAGGTATCCTTTAGGGTTCTTATCAGGAGTAAAAATATCTAATTTAAGTTTTAAATTAGATAA
GTTTAGTGAACACAACTTAGTCAAATTACAAGTAAATCGGAGTG
Found at i:23872208 original size:10 final size:11
Alignment explanation
Indices: 23872164--23872208 Score: 58
Period size: 10 Copynumber: 4.2 Consensus size: 11
23872154 TGACAATATA
23872164 TTTCTTTTCTT
1 TTTCTTTTCTT
23872175 TTCTCTTTTCTT
1 TT-TCTTTTCTT
*
23872187 CTTC-TTTCTT
1 TTTCTTTTCTT
23872197 TTTCTTTT-TT
1 TTTCTTTTCTT
23872207 TT
1 TT
23872209 GTGATTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 13 0.43
11 7 0.23
12 10 0.33
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:23883862 original size:20 final size:20
Alignment explanation
Indices: 23883805--23883868 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
23883795 AAAACACCAA
*
23883805 AGTGCTATTAGGAGCACAAAT
1 AGTGCTATTAGGAGCAC-TAT
* *
23883826 A-TGCTATCAAGAGCACTAT
1 AGTGCTATTAGGAGCACTAT
* *
23883845 AGTGCTGTTAGGAGCACTGT
1 AGTGCTATTAGGAGCACTAT
23883865 AGTG
1 AGTG
23883869 TTAACAAGAG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
19 3 0.09
20 31 0.89
21 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (20 bp):
AGTGCTATTAGGAGCACTAT
Found at i:23892940 original size:44 final size:43
Alignment explanation
Indices: 23892855--23892941 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
23892845 GTTGACATAC
* * * * *
23892855 GATTGATGGTTTTATTTTTTGGATCATTTTGATGGATGTATTT
1 GATTGAAGGTTTAATTTTTTGAATCATTCTAATGGATGTATTT
*
23892898 GATTGAAGGTTTAATTTTATTGAATCATTCTAATGGTTGTATTT
1 GATTGAAGGTTTAATTTT-TTGAATCATTCTAATGGATGTATTT
23892942 TGATGGACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 16 0.43
44 21 0.57
ACGTcount: A:0.23, C:0.03, G:0.21, T:0.53
Consensus pattern (43 bp):
GATTGAAGGTTTAATTTTTTGAATCATTCTAATGGATGTATTT
Found at i:23893948 original size:11 final size:12
Alignment explanation
Indices: 23893928--23893960 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
23893918 GGACCCAAAA
23893928 TGAATTAATTT-
1 TGAATTAATTTG
*
23893939 TGAATCAATTTG
1 TGAATTAATTTG
23893951 TGAATTAATT
1 TGAATTAATT
23893961 CACTTGTGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (12 bp):
TGAATTAATTTG
Found at i:23894936 original size:37 final size:35
Alignment explanation
Indices: 23894874--23894943 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 35
23894864 TTCCAAAAAT
23894874 AATATTATTTTAATAGTTTAATATTAAATTTAATTG
1 AATATTATTTTAATAGTTTAATATT-AATTTAATTG
*
23894910 AATACTTATTTTAATAGTATT-TTATTAATTTAAT
1 AATA-TTATTTTAATAGT-TTAATATTAATTTAAT
23894944 ATTAAAGTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 12 0.39
37 17 0.55
38 2 0.06
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54
Consensus pattern (35 bp):
AATATTATTTTAATAGTTTAATATTAATTTAATTG
Found at i:23895066 original size:62 final size:60
Alignment explanation
Indices: 23894876--23895067 Score: 158
Period size: 62 Copynumber: 3.0 Consensus size: 60
23894866 CCAAAAATAA
* * * *
23894876 TATTATTTTAATAG-TTTAATATTAAATTTAATTGAATACTTATTTTAATAGTATT-TTAT
1 TATTATTTTAATAGATTTAATATTAAATTTAATTTAATATTTATTTTGATAATATTATT-T
* *
23894935 TAATTTAATATTAAAGTGAGTATCTTAATATTAAATTTAATTTAATGTTTATATTGTTGATAA-A
1 T-A-TT-AT-TTTAA-T-AG-AT-TTAATATTAAATTTAATTTAAT-ATT-TATT-TTGATAATA
*
23894999 -CATTT
55 TTATTT
*
23895004 TATTATTTTAATAAGATTTAATATTCAATTTAATTTAATATTTATTTTGATAAATATTATTT
1 TATTATTTTAAT-AGATTTAATATTAAATTTAATTTAATATTTATTTTGAT-AATATTATTT
23895066 TA
1 TA
23895068 ATCTAATATT
Statistics
Matches: 105, Mismatches: 12, Indels: 29
0.72 0.08 0.20
Matches are distributed among these distances:
59 6 0.06
60 7 0.07
61 5 0.05
62 29 0.28
63 6 0.06
64 4 0.04
65 6 0.06
66 2 0.02
67 3 0.03
68 22 0.21
69 3 0.03
70 7 0.07
71 5 0.05
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.54
Consensus pattern (60 bp):
TATTATTTTAATAGATTTAATATTAAATTTAATTTAATATTTATTTTGATAATATTATTT
Found at i:23895075 original size:16 final size:15
Alignment explanation
Indices: 23895021--23895078 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 15
23895011 TTAATAAGAT
*
23895021 TTAATATTCAATTTAA
1 TTAATATT-ATTTTAA
*
23895037 TTTAATATTTATTTTGA
1 -TTAATA-TTATTTTAA
*
23895054 TAAATATTATTTTAA
1 TTAATATTATTTTAA
23895069 TCTAATATTA
1 T-TAATATTA
23895079 AAGTGATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
15 9 0.26
16 12 0.35
17 11 0.32
18 2 0.06
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (15 bp):
TTAATATTATTTTAA
Found at i:23896009 original size:26 final size:24
Alignment explanation
Indices: 23895966--23896017 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
23895956 TTATCTCCCT
*
23895966 ATATATATATTTTATAATTGTTTATA
1 ATATATATATTATATAA-TG-TTATA
* *
23895992 ATATTTATATTATGTAATGTTATA
1 ATATATATATTATATAATGTTATA
23896016 AT
1 AT
23896018 TGTGATACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 7 0.30
25 2 0.09
26 14 0.61
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (24 bp):
ATATATATATTATATAATGTTATA
Found at i:23902379 original size:37 final size:36
Alignment explanation
Indices: 23902331--23902406 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
23902321 ATTAAAAAAA
23902331 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATTTTAATAGTATT-ATATT-AATTTAATAT
*
23902367 TAATACTTATTTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATTTTAATAGTATTATATTAATTTAATAT
23902404 TAA
1 TAA
23902407 AGTAATTATC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
36 13 0.36
37 21 0.58
38 2 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (36 bp):
TAATATTATTTTAATAGTATTATATTAATTTAATAT
Found at i:23902404 original size:11 final size:11
Alignment explanation
Indices: 23902331--23902406 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 11
23902321 ATTAAAAAAA
*
23902331 TAATATTATTT
1 TAATATTAATT
23902342 TAATAGTTTAATAT
1 TAATA--TTAAT-T
23902356 TAA-ATTTAATT
1 TAATA-TTAATT
*
23902367 TAATACTTATTT
1 TAATA-TTAATT
*
23902379 TAATAGT-ATT
1 TAATATTAATT
23902389 T--TATTAATT
1 TAATATTAATT
23902398 TAATATTAA
1 TAATATTAA
23902407 AGTAATTATC
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 16 0.31
12 17 0.33
13 5 0.10
14 4 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:23902414 original size:20 final size:18
Alignment explanation
Indices: 23902332--23902438 Score: 69
Period size: 20 Copynumber: 5.8 Consensus size: 18
23902322 TTAAAAAAAT
* *
23902332 AATATTATTTTAATAGTTT
1 AATATTAATTTAATA-TTA
23902351 AATATTAAATTTAAT-TT-
1 AATATT-AATTTAATATTA
* *
23902368 AATACTTATTTTAATAGTA
1 AATA-TTAATTTAATATTA
**
23902387 TTTTATTAATTTAATATTA
1 -AATATTAATTTAATATTA
23902406 AAGTAATT-ATCTTAATATTA
1 AA-T-ATTAAT-TTAATATTA
23902426 AAT-TTAATTTAAT
1 AATATTAATTTAAT
23902439 GTTTATCTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
17 18 0.26
18 7 0.10
19 22 0.31
20 23 0.33
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (18 bp):
AATATTAATTTAATATTA
Found at i:23902499 original size:17 final size:17
Alignment explanation
Indices: 23902477--23902539 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 17
23902467 GTTTAATAAG
23902477 ATTTAATATTAAATTTA
1 ATTTAATATTAAATTTA
* *
23902494 ATTTAATATT-TATCTTG
1 ATTTAATATTAAAT-TTA
* *
23902511 A-TAAATATTAAATTAA
1 ATTTAATATTAAATTTA
*
23902527 ATATAATATTAAA
1 ATTTAATATTAAA
23902540 GTGGTTAAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
16 11 0.31
17 24 0.69
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
ATTTAATATTAAATTTA
Found at i:23903483 original size:232 final size:232
Alignment explanation
Indices: 23903077--23903543 Score: 916
Period size: 232 Copynumber: 2.0 Consensus size: 232
23903067 CGCAATGGAA
23903077 GTACACAACACTTCTCTACGCACTTGGTTTTGTGTACATAGAAGAAGACATGTTGGAGATGTGAA
1 GTACACAACACTTCTCTACGCACTTGGTTTTGTGTACATAGAAGAAGACATGTTGGAGATGTGAA
*
23903142 AGAGATGGAAAAACGAAGAAAACATAGGAACTAAAAAGGGAAAATTTTAAGAGAAAACAGAAGAG
66 AGAGATGGAAAAACGAAGAAAACATAGGAACTAAAAACGGAAAATTTTAAGAGAAAACAGAAGAG
23903207 GGAAAAATGAAAGAGATGCAGACAAAACGAAAGAGGAATAAATGATGCAAAATGCTGAAAATGTT
131 GGAAAAATGAAAGAGATGCAGACAAAACGAAAGAGGAATAAATGATGCAAAATGCTGAAAATGTT
23903272 GAAAAACGAAAGAAAAAGAAATGGTAGAAAAGATGAT
196 GAAAAACGAAAGAAAAAGAAATGGTAGAAAAGATGAT
*
23903309 GTACACAACACTTCTCTACGCACTTGGTTTTGTGTTCATAGAAGAAGACATGTTGGAGATGTGAA
1 GTACACAACACTTCTCTACGCACTTGGTTTTGTGTACATAGAAGAAGACATGTTGGAGATGTGAA
23903374 AGAGATGGAAAAACGAAGAAAACATAGGAACTAAAAACGGAAAATTTTAAGAGAAAACAGAAGAG
66 AGAGATGGAAAAACGAAGAAAACATAGGAACTAAAAACGGAAAATTTTAAGAGAAAACAGAAGAG
23903439 GGAAAAATGAAAGAGATGCAGACAAAACGAAAGAGGAATAAATGATGCAAAATGCTGAAAATGTT
131 GGAAAAATGAAAGAGATGCAGACAAAACGAAAGAGGAATAAATGATGCAAAATGCTGAAAATGTT
23903504 GAAAAACGAAAGAAAAAGAAATGGTAGAAAAGATGAT
196 GAAAAACGAAAGAAAAAGAAATGGTAGAAAAGATGAT
23903541 GTA
1 GTA
23903544 GATAAAACGA
Statistics
Matches: 233, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
232 233 1.00
ACGTcount: A:0.49, C:0.09, G:0.24, T:0.18
Consensus pattern (232 bp):
GTACACAACACTTCTCTACGCACTTGGTTTTGTGTACATAGAAGAAGACATGTTGGAGATGTGAA
AGAGATGGAAAAACGAAGAAAACATAGGAACTAAAAACGGAAAATTTTAAGAGAAAACAGAAGAG
GGAAAAATGAAAGAGATGCAGACAAAACGAAAGAGGAATAAATGATGCAAAATGCTGAAAATGTT
GAAAAACGAAAGAAAAAGAAATGGTAGAAAAGATGAT
Found at i:23903621 original size:14 final size:14
Alignment explanation
Indices: 23903602--23903631 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23903592 AAAAATAAAT
23903602 TTAAAAGAAAAAAA
1 TTAAAAGAAAAAAA
*
23903616 TTAAAATAAAAAAA
1 TTAAAAGAAAAAAA
23903630 TT
1 TT
23903632 TCAAGGGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (14 bp):
TTAAAAGAAAAAAA
Found at i:23904370 original size:4 final size:4
Alignment explanation
Indices: 23904361--23904394 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
23904351 CTTCATTGCA
23904361 CTTT CTTT CTTT CTTT CTCTCT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CT-T-T CTTT CTTT CTTT
23904395 TGATTTCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 23 0.82
5 2 0.07
6 3 0.11
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:23905850 original size:55 final size:55
Alignment explanation
Indices: 23905781--23905884 Score: 156
Period size: 55 Copynumber: 1.9 Consensus size: 55
23905771 ATTTTTTAAT
*
23905781 TTTTAAGGGGTTTAATTTTTTTTAATTTTTAAAGG-TCAAAATTTTTTTACCAAC
1 TTTTAAGGGGTTTAATTTTTTTTAACTTTTAAAGGATCAAAATTTTTTTACCAAC
* * *
23905835 TTTTAAGGGATTTTAATTTTTTTTAACTTTTAAAGGATCTAATTTTTTTT
1 TTTTAAGGG-GTTTAATTTTTTTTAACTTTTAAAGGATCAAAATTTTTTT
23905885 TTCAATTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 9 0.20
55 24 0.55
56 11 0.25
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (55 bp):
TTTTAAGGGGTTTAATTTTTTTTAACTTTTAAAGGATCAAAATTTTTTTACCAAC
Found at i:23905885 original size:27 final size:26
Alignment explanation
Indices: 23905772--23905884 Score: 102
Period size: 26 Copynumber: 4.2 Consensus size: 26
23905762 TAAAATATTA
* * * *
23905772 TTTTTTAATTTTTAAGGGGTTTAATT
1 TTTTTTAACTTTTAAAGGATCTAATT
* *
23905798 TTTTTTAATTTTTAAAGG-TCAAAATT
1 TTTTTTAACTTTTAAAGGATC-TAATT
* * *
23905824 TTTTTACCAACTTTTAAGGGATTTTAATT
1 TTTTT--TAACTTTTAAAGGA-TCTAATT
23905853 TTTTTTAACTTTTAAAGGATCTAATT
1 TTTTTTAACTTTTAAAGGATCTAATT
23905879 TTTTTT
1 TTTTTT
23905885 TTCAATTTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.01
26 38 0.54
27 12 0.17
28 10 0.14
29 9 0.13
30 1 0.01
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (26 bp):
TTTTTTAACTTTTAAAGGATCTAATT
Found at i:23914354 original size:71 final size:72
Alignment explanation
Indices: 23914250--23914510 Score: 303
Period size: 71 Copynumber: 3.7 Consensus size: 72
23914240 GGTCTGATGA
* *
23914250 CTAAGATCTTGCATTTGTTATGGATTCTCTACAGCATCGTAAGTCACTTTAAAGTGAAAAC-GGT
1 CTAAGATCTTGCATTTGTTACGGATTCTCTACAGCATCGTAAGTCACTGTAAAGTGAAAACTGGT
23914314 CCAATGG
66 CCAATGG
* * * * * *
23914321 CTAAGATATTGCATTTGTTACGGATTCTTTACAGTATTGTGAGTTACTGTAAAGTG-AAACTGGT
1 CTAAGATCTTGCATTTGTTACGGATTCTCTACAGCATCGTAAGTCACTGTAAAGTGAAAACTGGT
23914385 CCAATGG
66 CCAATGG
* * *
23914392 CTAAGATCTTGCATTTGTTGCGGATTCTCTACAGCATCGTTAGTCACTGTAAAGTG-AAACTAGT
1 CTAAGATCTTGCATTTGTTACGGATTCTCTACAGCATCGTAAGTCACTGTAAAGTGAAAACTGGT
**
23914456 CTGATGG
66 CCAATGG
* * * * * ** * *
23914463 TTGAGATCCTACATTTGTTGCATATTCTCTACAGTATCGTCAGTCACT
1 CTAAGATCTTGCATTTGTTACGGATTCTCTACAGCATCGTAAGTCACT
23914511 TTATGTGAAA
Statistics
Matches: 163, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
70 4 0.02
71 159 0.98
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (72 bp):
CTAAGATCTTGCATTTGTTACGGATTCTCTACAGCATCGTAAGTCACTGTAAAGTGAAAACTGGT
CCAATGG
Found at i:23918421 original size:3 final size:3
Alignment explanation
Indices: 23918415--23918463 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
23918405 ATTTTCTTTC
23918415 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
23918463 C
1 C
23918464 AACAAGCCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:23918756 original size:16 final size:16
Alignment explanation
Indices: 23918735--23918766 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23918725 AGAAATTTTT
*
23918735 ATGTTAAAGGACTAAA
1 ATGTTAAAGGAATAAA
23918751 ATGTTAAAGGAATAAA
1 ATGTTAAAGGAATAAA
23918767 TTTGTAAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.19, T:0.25
Consensus pattern (16 bp):
ATGTTAAAGGAATAAA
Found at i:23919341 original size:71 final size:71
Alignment explanation
Indices: 23919225--23919414 Score: 265
Period size: 71 Copynumber: 2.7 Consensus size: 71
23919215 GTCTGATGTT
* *
23919225 TGAGATCTTGCATTTGTTGCGGATTCTCTACAGCATTGTGAGTCACTGTAAAGTGAAA-TCGGTC
1 TGAGATCTTGCATTTGTTGCGGATTCTCTATAGCATCGTGAGTCACTGTAAAGTGAAACT-GGTC
*
23919289 CGATGGC
65 CGATAGC
* * ** *
23919296 TGAGATGTTGCATTTATTTTGGATTCTCTATAGAATCGTGAGTCACTGTAAAGTGAAACTGGTCC
1 TGAGATCTTGCATTTGTTGCGGATTCTCTATAGCATCGTGAGTCACTGTAAAGTGAAACTGGTCC
*
23919361 GATAGT
66 GATAGC
* *
23919367 TGAGATTTTGCATTTGCTGCGGATTCTCTATAGCATCGTGAGTCACTG
1 TGAGATCTTGCATTTGTTGCGGATTCTCTATAGCATCGTGAGTCACTG
23919415 ATCACGCTAT
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
71 102 0.99
72 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.35
Consensus pattern (71 bp):
TGAGATCTTGCATTTGTTGCGGATTCTCTATAGCATCGTGAGTCACTGTAAAGTGAAACTGGTCC
GATAGC
Found at i:23921480 original size:18 final size:18
Alignment explanation
Indices: 23921457--23921516 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
23921447 TATTAATTTA
*
23921457 CAATGACAAATGGAAATG
1 CAATGACAAATGAAAATG
* *
23921475 CAATGAC-AATGCACATG
1 CAATGACAAATGAAAATG
* * *
23921492 CAGTGACAATTAAAAATG
1 CAATGACAAATGAAAATG
23921510 CAATGAC
1 CAATGAC
23921517 CAAGGGAATG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
17 14 0.42
18 19 0.58
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (18 bp):
CAATGACAAATGAAAATG
Found at i:23921589 original size:12 final size:13
Alignment explanation
Indices: 23921563--23921595 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
23921553 GATCTGCATG
23921563 AAAACTAAAACTA
1 AAAACTAAAACTA
*
23921576 AAAACTGAAA-TA
1 AAAACTAAAACTA
23921588 AAAACTAA
1 AAAACTAA
23921596 CTCAATTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.70, C:0.12, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAACTAAAACTA
Found at i:23928402 original size:18 final size:17
Alignment explanation
Indices: 23928377--23928410 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
23928367 TATTCTTTTT
23928377 CTAACTTTTATTGATTA
1 CTAACTTTTATTGATTA
*
23928394 CTAATCTTTTGTTGATT
1 CTAA-CTTTTATTGATT
23928411 TTCTTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTAACTTTTATTGATTA
Found at i:23937406 original size:20 final size:21
Alignment explanation
Indices: 23937369--23937407 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23937359 AAATCGAGCA
*
23937369 TCACTGAGTTATAAAATGCAG
1 TCACTAAGTTATAAAATGCAG
23937390 TCACTAAGTTA-AAAATGC
1 TCACTAAGTTATAAAATGC
23937408 TAAAAATGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (21 bp):
TCACTAAGTTATAAAATGCAG
Found at i:23937422 original size:13 final size:13
Alignment explanation
Indices: 23937404--23937428 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23937394 TAAGTTAAAA
23937404 ATGCTAAAAATGC
1 ATGCTAAAAATGC
23937417 ATGCTAAAAATG
1 ATGCTAAAAATG
23937429 ATAAAATGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCTAAAAATGC
Found at i:23938880 original size:36 final size:33
Alignment explanation
Indices: 23938839--23938905 Score: 82
Period size: 33 Copynumber: 1.9 Consensus size: 33
23938829 GCGACAGTAG
23938839 GTTCTTCCTTTCTTCTTTCTT-TTCCTTCCTCCTCTC
1 GTTCTT-C-TTCTT-TTTCTTCTT-CTTCCTCCTCTC
*
23938875 GTTCTTCTTCTTTTTCTTCTTCTTTCTCCTC
1 GTTCTTCTTCTTTTTCTTCTTCTTCCTCCTC
23938906 ATTAATCTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 15 0.52
34 7 0.24
35 1 0.03
36 6 0.21
ACGTcount: A:0.00, C:0.36, G:0.03, T:0.61
Consensus pattern (33 bp):
GTTCTTCTTCTTTTTCTTCTTCTTCCTCCTCTC
Found at i:23948171 original size:21 final size:20
Alignment explanation
Indices: 23948147--23948200 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
23948137 AGAGTTTTTA
*
23948147 GTATCGATAGAAGCATGACTT
1 GTATCGATAGAAGC-TCACTT
* *
23948168 GTATCGGTAGATATCTCACTT
1 GTATCGATAGA-AGCTCACTT
*
23948189 ATATCGATAGAA
1 GTATCGATAGAA
23948201 CTGTCATAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 1 0.04
21 24 0.89
22 2 0.07
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATAGAAGCTCACTT
Found at i:23953060 original size:3 final size:3
Alignment explanation
Indices: 23953054--23953091 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
23953044 AATGAATAAT
*
23953054 ATG ATG ATG ATG ATG ACG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
23953092 AATAGTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.34, C:0.03, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:23953103 original size:3 final size:3
Alignment explanation
Indices: 23953090--23953143 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
23953080 GATGATGATG
*
23953090 ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23953138 ATA ATA
1 ATA ATA
23953144 TGACTACAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23953189 original size:18 final size:17
Alignment explanation
Indices: 23953159--23953192 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
23953149 ACAATGACAA
23953159 TAATAACATGATAATAC
1 TAATAACATGATAATAC
23953176 TAATAACAATGATAATA
1 TAATAAC-ATGATAATA
23953193 ATTAACATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.29
Consensus pattern (17 bp):
TAATAACATGATAATAC
Found at i:23953316 original size:5 final size:5
Alignment explanation
Indices: 23953308--23953346 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
23953298 AGTGCTGAAA
23953308 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
23953347 AAATAGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:23953356 original size:10 final size:9
Alignment explanation
Indices: 23953305--23953374 Score: 70
Period size: 10 Copynumber: 7.2 Consensus size: 9
23953295 AAAAGTGCTG
23953305 AAAAAAATA
1 AAAAAAATA
23953314 AAATAAAATA
1 AAA-AAAATA
23953324 AAATAAAATA
1 AAA-AAAATA
23953334 AAATAAAAT-
1 AAA-AAAATA
23953343 AAAAAAATA
1 AAAAAAATA
23953352 GAAAACAAATA
1 -AAAA-AAATA
*
23953363 TTAAAAAATA
1 -AAAAAAATA
23953373 AA
1 AA
23953375 GTAAAGGACT
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
8 5 0.09
9 7 0.13
10 34 0.63
11 8 0.15
ACGTcount: A:0.80, C:0.01, G:0.01, T:0.17
Consensus pattern (9 bp):
AAAAAAATA
Found at i:23960638 original size:23 final size:23
Alignment explanation
Indices: 23960607--23960686 Score: 90
Period size: 23 Copynumber: 3.5 Consensus size: 23
23960597 TCATGCATTT
23960607 TAGTATCAAAATCAGTTCGATAA
1 TAGTATCAAAATCAGTTCGATAA
* * *
23960630 TAGTGTCAAAACCAGTTCGGTAA
1 TAGTATCAAAATCAGTTCGATAA
* * *
23960653 TTGTATC-AAATCAGTACAATAA
1 TAGTATCAAAATCAGTTCGATAA
*
23960675 TAGTATCCAAAT
1 TAGTATCAAAAT
23960687 TAGTACAATA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
22 17 0.37
23 29 0.63
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (23 bp):
TAGTATCAAAATCAGTTCGATAA
Found at i:23960675 original size:22 final size:23
Alignment explanation
Indices: 23960607--23960697 Score: 76
Period size: 23 Copynumber: 4.0 Consensus size: 23
23960597 TCATGCATTT
* * *
23960607 TAGTATCAAAATCAGTTCGATAA
1 TAGTATCCAAATCAGTACAATAA
* * * * **
23960630 TAGTGTCAAAACCAGTTCGGTAA
1 TAGTATCCAAATCAGTACAATAA
*
23960653 TTGTAT-CAAATCAGTACAATAA
1 TAGTATCCAAATCAGTACAATAA
*
23960675 TAGTATCCAAATTAGTACAATAA
1 TAGTATCCAAATCAGTACAATAA
23960698 CAATCTTGGT
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
22 16 0.29
23 39 0.71
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (23 bp):
TAGTATCCAAATCAGTACAATAA
Found at i:23967425 original size:26 final size:26
Alignment explanation
Indices: 23967394--23967444 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23967384 TCGAAAAAAA
*
23967394 AATGCTACCTA-ATAGCATAAGGAAAC
1 AATGCTACC-AGAGAGCATAAGGAAAC
23967420 AATGCTACCAGAGAGCATAAGGAAA
1 AATGCTACCAGAGAGCATAAGGAAA
23967445 AATATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.16
Consensus pattern (26 bp):
AATGCTACCAGAGAGCATAAGGAAAC
Found at i:23971908 original size:31 final size:30
Alignment explanation
Indices: 23971708--23972014 Score: 297
Period size: 30 Copynumber: 10.3 Consensus size: 30
23971698 AAATCAAACA
*
23971708 TTTGGAAAAGTTT-GAGGG-TAAAATGTGAGT
1 TTTGGAAAAGTTTAG-GGGTTAAAATGT-AAT
* * *
23971738 TTTGG--AGGTTTGGGGGTTAAATTGTAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
* * * *
23971766 TTT-TAAAAGATTCGGGAGTCAAAATGTAAT
1 TTTGGAAAAGTTTAGGG-GTTAAAATGTAAT
* *
23971796 TTT-GAGAAAGTTTA-AGGTTAAAATGTGAT
1 TTTGGA-AAAGTTTAGGGGTTAAAATGTAAT
*
23971825 TTTGGCAAAGTTTAGGGGTTAAAATGTAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
*
23971855 TTTGGAAAAGTTTAAGGGTTAAAATGTAAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGT-AAT
* ** *
23971886 ATTAAAAAACTTTAGGGGTTAAAATGTAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
*
23971916 TTTGGAAAAGTTTAGGTGTTAAAATGTAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
*
23971946 TTTGG-AAAGTTTGAGGGGTTAAAATTTAAT
1 TTTGGAAAAGTTT-AGGGGTTAAAATGTAAT
* * * *
23971976 TTTGGAAAAATTTAGTGGTTAAAATATGATT
1 TTTGGAAAAGTTTAGGGGTTAAAATGT-AAT
23972007 TTTGGAAA
1 TTTGGAAA
23972015 GTTAAAGGAC
Statistics
Matches: 229, Mismatches: 36, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
28 13 0.06
29 44 0.19
30 125 0.55
31 47 0.21
ACGTcount: A:0.36, C:0.01, G:0.25, T:0.37
Consensus pattern (30 bp):
TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
Found at i:23971930 original size:91 final size:90
Alignment explanation
Indices: 23971811--23972014 Score: 268
Period size: 91 Copynumber: 2.2 Consensus size: 90
23971801 GAAAGTTTAA
* *
23971811 GGTTAAAATGTGATTTTGGCAAAGTTTAGGGGTTAAAATGTAATTTTGGAAAAGTTT-AAGGGTT
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTAATTTTGG-AAAGTTTGAAGGGTT
23971875 AAAATGTAAATATT-AAAAAACTTTAGG
65 AAAAT-TAAATATTGAAAAAA-TTTAGG
* *
23971902 GGTTAAAATGTAATTTTGGAAAAGTTTAGGTGTTAAAATGTAATTTTGGAAAGTTTGAGGGGTTA
1 GGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTAATTTTGGAAAGTTTGAAGGGTTA
* * * *
23971967 AAATTTAATTTTGGAAAAATTTAGT
66 AAATTAAATATTGAAAAAATTTAGG
* *
23971992 GGTTAAAATATGATTTTTGGAAA
1 GGTTAAAATGT-AATTTTGGAAA
23972015 GTTAAAGGAC
Statistics
Matches: 100, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
90 28 0.28
91 72 0.72
ACGTcount: A:0.38, C:0.01, G:0.23, T:0.38
Consensus pattern (90 bp):
GGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTTAAAATGTAATTTTGGAAAGTTTGAAGGGTTA
AAATTAAATATTGAAAAAATTTAGG
Found at i:23974104 original size:99 final size:99
Alignment explanation
Indices: 23973987--23974610 Score: 609
Period size: 99 Copynumber: 6.3 Consensus size: 99
23973977 TAAGGTGTTA
** * * *
23973987 GGTTCGCCGTTGTAGCCTCAACCTTTCCTTTCATATCTTCATGGTATCGGATTCGCTGTTGCGAC
1 GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTATCGGGTTCGCCGTTGCGAC
* * *
23974052 CTCAATCC-TTCCCATCGCATCGTCTAAGGCACCG
66 CTCAA-CCTTTCCCATCACATCTTCTAAGGTACCG
* * * * * *
23974086 GGTTCGCTGTTGTGGCCTCAACCTTTCCCTTTATATCTCCGTGGTATCGGGTTCGCCGTTGCGGC
1 GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTATCGGGTTCGCCGTTGCGAC
*
23974151 CTCAACCTTTCCCATCACATCTTCTTAGGTACCG
66 CTCAACCTTTCCCATCACATCTTCTAAGGTACCG
* * *
23974185 GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCGTATCTTCATGGTA-CTGGGTTCGCTGTTACGA
1 GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTATC-GGGTTCGCCGTTGCGA
*
23974249 CCTCAACCTTTCCCATCACATCTTCTTAA-GTATCG
65 CCTCAACCTTTCCCATCACATCTTC-TAAGGTACCG
* * * * * * ** *
23974284 GGTTCACTGTTACGACCTCAACCTTTCCCTTCGTATCTTCATGGTACCGGGTTCGTTGTTGCGGC
1 GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTATCGGGTTCGCCGTTGCGAC
* ** *
23974349 CTCAACCTTTCCCTTCGTATCTTC-ATGGTACCG
66 CTCAACCTTTCCCATCACATCTTCTAAGGTACCG
* * * * * * * *
23974382 AGTTCGTCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTA-CTGGATTCACCGTCGCG
1 GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTC-ATGGTATC-GGGTTCGCCGTTGCG
* * * *
23974446 GCCTCAATCC-TTCCCTTCATC-TCTTC-ATGGTACTG
64 ACCTCAA-CCTTTCCCATCA-CATCTTCTAAGGTACCG
* * * * *
23974481 GGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCATAGGTATAGGGTTCACCGTTACGA
1 GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCAT-GGTATCGGGTTCGCCGTTGCGA
* *
23974546 CCTCAACCTTTCCCTTCACATCTTTTAAGGTACCG
65 CCTCAACCTTTCCCATCACATCTTCTAAGGTACCG
** * *
23974581 AATTCGCCATTGCAGCCTCAATCC-TTCCCT
1 GGTTCGCCGTTGCGGCCTCAA-CCTTTCCCT
23974611 GTCAAACCTG
Statistics
Matches: 440, Mismatches: 70, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
97 1 0.00
98 44 0.10
99 359 0.82
100 34 0.08
101 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.18, T:0.33
Consensus pattern (99 bp):
GGTTCGCCGTTGCGGCCTCAACCTTTCCCTTCATATCTTCATGGTATCGGGTTCGCCGTTGCGAC
CTCAACCTTTCCCATCACATCTTCTAAGGTACCG
Found at i:23974173 original size:148 final size:147
Alignment explanation
Indices: 23973987--23974569 Score: 602
Period size: 148 Copynumber: 3.9 Consensus size: 147
23973977 TAAGGTGTTA
* ** * * * * * *
23973987 GGTTCGCCGTTGTAGCCTCAACCTTTCCTTTCATATCTTCATGGTATCGGATTCGCTGTTGCGAC
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCATGGTACCGGGTTCGCCGTTGCGGC
* * * * *
23974052 CTCAATCC-TTCCCATCGCATCGTCTAAGGCACCGGGTTCGCTGTTGTGGCCTCAACCTTTCCCT
66 CTCAA-CCTTTCCCATCGCATCTTC-ATGGTACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCA
* * *
23974116 TTATATCTCCGT-GGTATCG
129 TCACATCTTC-TAGGTATCG
* * *
23974135 GGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGTTGCGG
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCAT-GGTACCGGGTTCGCCGTTGCGG
* * * * *
23974200 CCTCAACCTTTCCCTTCGTATCTTCATGGTACTGGGTTCGCTGTTACGACCTCAACCTTTCCCAT
65 CCTCAACCTTTCCCATCGCATCTTCATGGTACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCAT
*
23974265 CACATCTTCTTAAGTATCG
130 CACATCTTC-TAGGTATCG
* * * ** **
23974284 GGTTCACTGTTACGACCTCAACCTTTCCCTTCGTATCTTCATGGTACCGGGTTCGTTGTTGCGGC
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCATGGTACCGGGTTCGCCGTTGCGGC
* * *
23974349 CTCAACCTTTCCCTTCGTATCTTCATGGTACCGAGTTCG-TCGTTGCGGCCTCAACCTTTCCCAT
66 CTCAACCTTTCCCATCGCATCTTCATGGTACCGGGTTCGCT-GTTGCGGCCTCAACCTTTCCCAT
23974413 CACATCTTCTAAGGTA-CTG
130 CACATCTTCT-AGGTATC-G
* * *
23974432 GATTCACCGTCGCGGCCTCAATCC-TTCCCTTCATC-TCTTCATGGTACTGGGTTCGCCGTTGCG
1 GGTTCACCGTTGCGGCCTCAA-CCTTTCCCTTCA-CATCTTCATGGTACCGGGTTCGCCGTTGCG
* ** * * * *
23974495 GCCTCAACCTTTCCCATCACATCTTCATAGGTATAGGGTTCACCGTTACGACCTCAACCTTTCCC
64 GCCTCAACCTTTCCCATCGCATCTTCAT-GGTACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCC
*
23974560 TTCACATCTT
128 ATCACATCTT
23974570 TTAAGGTACC
Statistics
Matches: 364, Mismatches: 61, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
147 3 0.01
148 245 0.67
149 116 0.32
ACGTcount: A:0.15, C:0.33, G:0.19, T:0.33
Consensus pattern (147 bp):
GGTTCACCGTTGCGGCCTCAACCTTTCCCTTCACATCTTCATGGTACCGGGTTCGCCGTTGCGGC
CTCAACCTTTCCCATCGCATCTTCATGGTACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCATC
ACATCTTCTAGGTATCG
Found at i:23974449 original size:247 final size:248
Alignment explanation
Indices: 23974002--23974567 Score: 771
Period size: 247 Copynumber: 2.3 Consensus size: 248
23973992 GCCGTTGTAG
** * * * *
23974002 CCTCAACCTTTCCTTTCATATCTTCAT-GGTATCGGATTCGCTGTTGCGACCTCAATCC-TTCCC
1 CCTCAACCTTTCCCATCACATCTTCATAGGTATCGGGTTCACTGTTACGACCTCAA-CCTTTCCC
* * * *
23974065 ATCGCATCGTCTAAGGCACCGGGTTCGCTGTTGTGGCCTCAACCTTTCCCTTTATATCTCCGTGG
65 TTCGCATCGTCTAAGGCACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCTTCATATCTCCATGG
* * * * *
23974130 TATCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGT
130 TACCGAGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGATTCACCGT
* * *
23974195 TGCGGCCTCAA-CCTTTCCCTTCGTATCTTCATGGTACTGGGTTCGCTGTTACGA
195 CGCGGCCTCAATCC-TTCCCTTCATATCTTCATGGTACTGGGTTCGCCGTTACGA
* *
23974249 CCTCAACCTTTCCCATCACATCTTCTTAAGTATCGGGTTCACTGTTACGACCTCAACCTTTCCCT
1 CCTCAACCTTTCCCATCACATCTTCATAGGTATCGGGTTCACTGTTACGACCTCAACCTTTCCCT
* * * * * * *
23974314 TCGTATCTTC-ATGGTACCGGGTTCGTTGTTGCGGCCTCAACCTTTCCCTTCGTATCTTCATGGT
66 TCGCATCGTCTAAGGCACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCTTCATATCTCCATGGT
* *
23974378 ACCGAGTTCGTCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACTGGATTCACCGTC
131 ACCGAGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGATTCACCGTC
* * *
23974443 GCGGCCTCAATCCTTCCCTTCATCTCTTCATGGTACTGGGTTCGCCGTTGCGG
196 GCGGCCTCAATCCTTCCCTTCATATCTTCATGGTACTGGGTTCGCCGTTACGA
* *
23974496 CCTCAACCTTTCCCATCACATCTTCATAGGTATAGGGTTCACCGTTACGACCTCAACCTTTCCCT
1 CCTCAACCTTTCCCATCACATCTTCATAGGTATCGGGTTCACTGTTACGACCTCAACCTTTCCCT
*
23974561 TCACATC
66 TCGCATC
23974568 TTTTAAGGTA
Statistics
Matches: 278, Mismatches: 38, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
247 239 0.86
248 39 0.14
ACGTcount: A:0.15, C:0.33, G:0.18, T:0.33
Consensus pattern (248 bp):
CCTCAACCTTTCCCATCACATCTTCATAGGTATCGGGTTCACTGTTACGACCTCAACCTTTCCCT
TCGCATCGTCTAAGGCACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCTTCATATCTCCATGGT
ACCGAGTTCGCCGTTGCGGCCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGATTCACCGTC
GCGGCCTCAATCCTTCCCTTCATATCTTCATGGTACTGGGTTCGCCGTTACGA
Found at i:23974471 original size:50 final size:49
Alignment explanation
Indices: 23974001--23974610 Score: 385
Period size: 49 Copynumber: 12.3 Consensus size: 49
23973991 CGCCGTTGTA
* * * * *
23974001 GCCTCAACCTTTCCTTTCATATCTTCATGGTA-TCGGATTCGCTGTTGCG
1 GCCTCAACCTTTCCCTTCACATCTTCAAGGTACT-GGATTCACCGTTGCG
* * * * * * * * * *
23974050 ACCTCAATCC-TTCCCATCGCATCGTCTAAGGCACCGGGTTCGCTGTTGTG
1 GCCTCAA-CCTTTCCCTTCACATCTTC-AAGGTACTGGATTCACCGTTGCG
* * * ** * *
23974100 GCCTCAACCTTTCCCTTTATATCTCCGTGGTA-TCGGGTTCGCCGTTGCG
1 GCCTCAACCTTTCCCTTCACATCTTCAAGGTACT-GGATTCACCGTTGCG
* * * * *
23974149 GCCTCAACCTTTCCCATCACATCTTCTTAGGTACCGGGTTCGCCGTTGCG
1 GCCTCAACCTTTCCCTTCACATCTTC-AAGGTACTGGATTCACCGTTGCG
** * * * * *
23974199 GCCTCAACCTTTCCCTTCGTATCTTCATGGTACTGGGTTCGCTGTTACG
1 GCCTCAACCTTTCCCTTCACATCTTCAAGGTACTGGATTCACCGTTGCG
* * * * *
23974248 ACCTCAACCTTTCCCATCACATCTTCTTAA-GTA-TCGGGTTCACTGTTACG
1 GCCTCAACCTTTCCCTTCACATCTTC--AAGGTACT-GGATTCACCGTTGCG
* ** * * * ***
23974298 ACCTCAACCTTTCCCTTCGTATCTTCATGGTACCGGGTTCGTTGTTGCG
1 GCCTCAACCTTTCCCTTCACATCTTCAAGGTACTGGATTCACCGTTGCG
** * * **
23974347 GCCTCAACCTTTCCCTTCGTATCTTCATGGTAC-CGAGTTCGTCGTTGCG
1 GCCTCAACCTTTCCCTTCACATCTTCAAGGTACTGGA-TTCACCGTTGCG
* *
23974396 GCCTCAACCTTTCCCATCACATCTTCTAAGGTACTGGATTCACCGTCGCG
1 GCCTCAACCTTTCCCTTCACATCTTC-AAGGTACTGGATTCACCGTTGCG
* * *
23974446 GCCTCAATCC-TTCCCTTCATC-TCTTCATGGTACTGGGTTCGCCGTTGCG
1 GCCTCAA-CCTTTCCCTTCA-CATCTTCAAGGTACTGGATTCACCGTTGCG
* * *
23974495 GCCTCAACCTTTCCCATCACATCTTCATAGGTA-TAGGGTTCACCGTTACG
1 GCCTCAACCTTTCCCTTCACATCTTCA-AGGTACT-GGATTCACCGTTGCG
* * * * * * *
23974545 ACCTCAACCTTTCCCTTCACATCTTTTAAGGTACCGAATTCGCCATTGCA
1 GCCTCAACCTTTCCCTTCACATC-TTCAAGGTACTGGATTCACCGTTGCG
23974595 GCCTCAATCC-TTCCCT
1 GCCTCAA-CCTTTCCCT
23974611 GTCAAACCTG
Statistics
Matches: 452, Mismatches: 85, Indels: 47
0.77 0.15 0.08
Matches are distributed among these distances:
48 5 0.01
49 220 0.49
50 216 0.48
51 11 0.02
ACGTcount: A:0.16, C:0.33, G:0.18, T:0.33
Consensus pattern (49 bp):
GCCTCAACCTTTCCCTTCACATCTTCAAGGTACTGGATTCACCGTTGCG
Found at i:23983183 original size:28 final size:29
Alignment explanation
Indices: 23983149--23983214 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 29
23983139 AATCAGGTTT
* *
23983149 TTTGGAAAATTTAAGGTTAAAATCAAAC-
1 TTTGGAAAATTCAAGGTCAAAATCAAACA
*
23983177 TTTGGAAAATTCGAGGTCAAAATCAAACA
1 TTTGGAAAATTCAAGGTCAAAATCAAACA
23983206 TTTGGAAAA
1 TTTGGAAAA
23983215 GTTCGAGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 25 0.74
29 9 0.26
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.29
Consensus pattern (29 bp):
TTTGGAAAATTCAAGGTCAAAATCAAACA
Found at i:23983240 original size:30 final size:29
Alignment explanation
Indices: 23983206--23983364 Score: 112
Period size: 29 Copynumber: 5.4 Consensus size: 29
23983196 AAATCAAACA
23983206 TTTGGAAAAGTTCGAGGGTAAAATGTGAGT
1 TTTGGAAAAGTTCGAGGGTAAAATGTGA-T
* * *
23983236 TTTGG--AAGTTTG-GGAGCTAAATTGTAATT
1 TTTGGAAAAGTTCGAGG-G-TAAAATGTGA-T
* *
23983265 TTTGGAAGA-TTCGAGAGTCAAAATGTGAT
1 TTTGGAAAAGTTCGAGGGT-AAAATGTGAT
* ** *
23983294 TTTGGGAAAGTTTAAGGTTAAAATGTGAT
1 TTTGGAAAAGTTCGAGGGTAAAATGTGAT
* * *
23983323 TTTGGAAAAGTT-TAGGGGTCAAAGTGTAAT
1 TTTGGAAAAGTTCGA-GGGT-AAAATGTGAT
23983353 TTTGGAAAAGTT
1 TTTGGAAAAGTT
23983365 TAGGGGTCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 18
0.72 0.14 0.13
Matches are distributed among these distances:
27 2 0.02
28 8 0.08
29 47 0.47
30 41 0.41
31 2 0.02
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.35
Consensus pattern (29 bp):
TTTGGAAAAGTTCGAGGGTAAAATGTGAT
Found at i:23983325 original size:59 final size:60
Alignment explanation
Indices: 23983206--23983392 Score: 170
Period size: 59 Copynumber: 3.1 Consensus size: 60
23983196 AAATCAAACA
* * * *
23983206 TTTGGAAAAGTTCGAGGGT-AAAATGTGAGTTTT-GG-AAGTTTGGGAGCTAAATTGTAATT
1 TTTGGAAAAGTTCGAGGGTCAAAATGTGA-TTTTGGGAAAGTTTAGG-GTTAAAATGTGATT
* * *
23983265 TTTGGAAGA-TTCGAGAGTCAAAATGTGATTTTGGGAAAGTTTAAGGTTAAAATGTGA-T
1 TTTGGAAAAGTTCGAGGGTCAAAATGTGATTTTGGGAAAGTTTAGGGTTAAAATGTGATT
* * * * * *
23983323 TTTGGAAAAGTT-TAGGGGTCAAAGTGTAATTTTGGAAAAGTTTAGGGGTCAAAATTATGATT
1 TTTGGAAAAGTTCGA-GGGTCAAAATGTGATTTTGGGAAAGTTTA-GGGTTAAAA-TGTGATT
23983385 TTTGGAAA
1 TTTGGAAA
23983393 GTTTAAGGAC
Statistics
Matches: 104, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
58 22 0.21
59 55 0.53
60 14 0.13
61 4 0.04
62 9 0.09
ACGTcount: A:0.33, C:0.03, G:0.28, T:0.35
Consensus pattern (60 bp):
TTTGGAAAAGTTCGAGGGTCAAAATGTGATTTTGGGAAAGTTTAGGGTTAAAATGTGATT
Found at i:23983365 original size:30 final size:30
Alignment explanation
Indices: 23983281--23983397 Score: 148
Period size: 30 Copynumber: 3.9 Consensus size: 30
23983271 AGATTCGAGA
* *
23983281 GTCAAAATGTGATTTTGGGAAAGTTTA-AG
1 GTCAAAATGTGATTTTGGAAAAGTTTAGGG
*
23983310 GTTAAAATGTGATTTTGGAAAAGTTTAGGG
1 GTCAAAATGTGATTTTGGAAAAGTTTAGGG
* *
23983340 GTCAAAGTGTAATTTTGGAAAAGTTTAGGG
1 GTCAAAATGTGATTTTGGAAAAGTTTAGGG
*
23983370 GTCAAAATTATGATTTTTGG-AAAGTTTA
1 GTCAAAA-TGTGA-TTTTGGAAAAGTTTA
23983398 AGGACTTACT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
29 25 0.33
30 34 0.45
31 11 0.14
32 6 0.08
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (30 bp):
GTCAAAATGTGATTTTGGAAAAGTTTAGGG
Found at i:23985119 original size:17 final size:18
Alignment explanation
Indices: 23985092--23985125 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23985082 TTTAATTAGA
*
23985092 TAAATTAATTTTTTCAAT
1 TAAATTAATTTTCTCAAT
23985110 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
23985126 CTCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:23986256 original size:17 final size:16
Alignment explanation
Indices: 23986230--23986263 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
23986220 TTAAAAACCC
23986230 AAAAATAAAACAAAAT
1 AAAAATAAAACAAAAT
*
23986246 AAAAGATAAAATAAAAT
1 AAAA-ATAAAACAAAAT
23986263 A
1 A
23986264 GGTCTATAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (16 bp):
AAAAATAAAACAAAAT
Found at i:23988829 original size:26 final size:26
Alignment explanation
Indices: 23988799--23988867 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
23988789 TTTCCAGAAA
*
23988799 TTTAGCTCATT-CGAGCCCAGACAGAG
1 TTTAGCTC-TTACGAGCCCAAACAGAG
*
23988825 TTTAGCTCTTACGAGCCCAAACAGAA
1 TTTAGCTCTTACGAGCCCAAACAGAG
* *
23988851 TATCGCTCTTACGAGCC
1 TTTAGCTCTTACGAGCC
23988868 AGATAGAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
TTTAGCTCTTACGAGCCCAAACAGAG
Found at i:23988882 original size:25 final size:25
Alignment explanation
Indices: 23988829--23989020 Score: 197
Period size: 25 Copynumber: 7.5 Consensus size: 25
23988819 ACAGAGTTTA
* *
23988829 GCTCTTACGAGCCCAAACAGAA-TATC
1 GCTCTTACGAG-CCAGATAGAATTA-C
23988855 GCTCTTACGAGCCAGATAGAATTAC
1 GCTCTTACGAGCCAGATAGAATTAC
* * *
23988880 GCTCTTATGAGCCAGCTAAAATTAC
1 GCTCTTACGAGCCAGATAGAATTAC
* *
23988905 GCTCTTACAAGCCAGCTAGAATTAC
1 GCTCTTACGAGCCAGATAGAATTAC
*
23988930 GCTCTTACGAGCCAGACAGAATTAC
1 GCTCTTACGAGCCAGATAGAATTAC
* * *
23988955 GCTCTTACGAGCCAAAAACAAAATTAC
1 GCTCTTACGAGCC--AGATAGAATTAC
* *
23988982 GCTCTTACAAGTCAGAATCAGAATTAC
1 GCTCTTACGAGCCAG-AT-AGAATTAC
*
23989009 GCTCTTAAGAGC
1 GCTCTTACGAGC
23989021 AAGAATCAAA
Statistics
Matches: 140, Mismatches: 21, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
25 89 0.64
26 14 0.10
27 37 0.26
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (25 bp):
GCTCTTACGAGCCAGATAGAATTAC
Found at i:23988933 original size:75 final size:77
Alignment explanation
Indices: 23988829--23989020 Score: 234
Period size: 75 Copynumber: 2.5 Consensus size: 77
23988819 ACAGAGTTTA
* * *
23988829 GCTCTTACGAGCCCA-AA-CAGAA-TATCGCTCTTACGAGCCAGATAGAATTACGCTCTTATGAG
1 GCTCTTACAAG-CCAGAATCAGAATTA-CGCTCTTACGAGCCAGACAGAATTACGCTCTTACGAG
*
23988891 CC-AGCTAAAATTAC
64 CCAAAC-AAAATTAC
*
23988905 GCTCTTACAAGCCAG-CT-AGAATTACGCTCTTACGAGCCAGACAGAATTACGCTCTTACGAGCC
1 GCTCTTACAAGCCAGAATCAGAATTACGCTCTTACGAGCCAGACAGAATTACGCTCTTACGAGCC
23988968 AAAAACAAAATTAC
66 --AAACAAAATTAC
* *
23988982 GCTCTTACAAGTCAGAATCAGAATTACGCTCTTAAGAGC
1 GCTCTTACAAGCCAGAATCAGAATTACGCTCTTACGAGC
23989021 AAGAATCAAA
Statistics
Matches: 100, Mismatches: 8, Indels: 13
0.83 0.07 0.11
Matches are distributed among these distances:
75 44 0.44
76 12 0.12
77 22 0.22
78 3 0.03
79 19 0.19
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (77 bp):
GCTCTTACAAGCCAGAATCAGAATTACGCTCTTACGAGCCAGACAGAATTACGCTCTTACGAGCC
AAACAAAATTAC
Found at i:23994307 original size:24 final size:23
Alignment explanation
Indices: 23994280--23994330 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
23994270 AAAAAAACAT
23994280 AAATAT-AAAT-AGACATGAAAGTAA
1 AAATATGAAATAAGA-AT-AAA-TAA
23994304 AAATATGAAATAAGAATAAATAA
1 AAATATGAAATAAGAATAAATAA
23994327 AAAT
1 AAAT
23994331 TATGCAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 7 0.28
24 9 0.36
25 6 0.24
26 3 0.12
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.22
Consensus pattern (23 bp):
AAATATGAAATAAGAATAAATAA
Found at i:23994808 original size:42 final size:42
Alignment explanation
Indices: 23994740--23994985 Score: 295
Period size: 42 Copynumber: 5.9 Consensus size: 42
23994730 AAAAAATAAA
* * *
23994740 TAAATGGACCTCTACGCCTAGG-CCTCTAAATGCAATAAAAAG
1 TAAATGGACCTCCACACCT-GGACCTCTAAATGCAATGAAAAG
* * * *
23994782 TAAATGGGCCTCCACACTTGGACCTCTAAATGAAATAAAAAG
1 TAAATGGACCTCCACACCTGGACCTCTAAATGCAATGAAAAG
* * *
23994824 TAAATGGA--T-CTCACCTGGGCCTCTAAATGCCATGAAAAG
1 TAAATGGACCTCCACACCTGGACCTCTAAATGCAATGAAAAG
23994863 TAAATGGACCTCCACACCTGGACCTCTAAATGCAATGAAAAG
1 TAAATGGACCTCCACACCTGGACCTCTAAATGCAATGAAAAG
* * *
23994905 TAAATGGGCCTCCACACCTAGG-TCTCTGAATGCAATGAAAAG
1 TAAATGGACCTCCACACCT-GGACCTCTAAATGCAATGAAAAG
* * *
23994947 TAAATGGACCTCTACACCTGGGCCTTTAAATGCAATGAA
1 TAAATGGACCTCCACACCTGGACCTCTAAATGCAATGAA
23994986 TGCTTTCCTT
Statistics
Matches: 175, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 32 0.18
40 1 0.01
41 5 0.03
42 135 0.77
43 2 0.01
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (42 bp):
TAAATGGACCTCCACACCTGGACCTCTAAATGCAATGAAAAG
Found at i:23994889 original size:123 final size:125
Alignment explanation
Indices: 23994740--23994985 Score: 347
Period size: 123 Copynumber: 2.0 Consensus size: 125
23994730 AAAAAATAAA
* * *
23994740 TAAATGGACCTCTACGCCTAGGCCTCTAAATGCAATAAAAAGTAAATGGGCCTCCACA-CTTGGA
1 TAAATGGACCTCCACACCTAGGCCTCTAAATGCAATAAAAAGTAAATGGGCCTCCACACCTAGG-
*
23994804 CCTCTAAATGAAATAAAAAGTAAATGGA-TCT-CACCTGGGCCTCTAAATGCCATGAAAAG
65 CCTCTAAATGAAATAAAAAGTAAATGGACTCTACACCTGGGCCTCTAAATGCAATGAAAAG
*
23994863 TAAATGGACCTCCACACCT-GGACCTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTAGG
1 TAAATGGACCTCCACACCTAGG-CCTCTAAATGCAATAAAAAGTAAATGGGCCTCCACACCTAGG
* * * * *
23994927 TCTCTGAATGCAATGAAAAGTAAATGGACCTCTACACCTGGGCCTTTAAATGCAATGAA
65 CCTCTAAATGAAATAAAAAGTAAATGGA-CTCTACACCTGGGCCTCTAAATGCAATGAA
23994986 TGCTTTCCTT
Statistics
Matches: 108, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
122 2 0.02
123 76 0.70
124 4 0.04
125 3 0.03
126 23 0.21
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (125 bp):
TAAATGGACCTCCACACCTAGGCCTCTAAATGCAATAAAAAGTAAATGGGCCTCCACACCTAGGC
CTCTAAATGAAATAAAAAGTAAATGGACTCTACACCTGGGCCTCTAAATGCAATGAAAAG
Found at i:23994964 original size:84 final size:84
Alignment explanation
Indices: 23994740--23994985 Score: 318
Period size: 81 Copynumber: 3.0 Consensus size: 84
23994730 AAAAAATAAA
* * * * * *
23994740 TAAATGGACCTCTACGCCTAGGCCTCTAAATGCAATAAAAAGTAAATGGGCCTCCACACTTGGAC
1 TAAATGGGCCTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGAC
* *
23994805 CTCTAAATGAAATAAAAAG
66 CTCTAAATGCAATGAAAAG
* * * *
23994824 TAAAT-GG-AT-CTCACCTGGGCCTCTAAATGCCATGAAAAGTAAATGGACCTCCACACCTGGAC
1 TAAATGGGCCTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGAC
23994886 CTCTAAATGCAATGAAAAG
66 CTCTAAATGCAATGAAAAG
* * * *
23994905 TAAATGGGCCTCCACACCTAGGTCTCTGAATGCAATGAAAAGTAAATGGACCTCTACACCTGGGC
1 TAAATGGGCCTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGAC
*
23994970 CTTTAAATGCAATGAA
66 CTCTAAATGCAATGAA
23994986 TGCTTTCCTT
Statistics
Matches: 138, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
81 67 0.49
82 3 0.02
83 2 0.01
84 66 0.48
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (84 bp):
TAAATGGGCCTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGAC
CTCTAAATGCAATGAAAAG
Found at i:23995404 original size:20 final size:20
Alignment explanation
Indices: 23995379--23995416 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23995369 TCTCTTTCTA
*
23995379 TTTTTTT-TCTTTTTTCTTT
1 TTTTTTTGTATTTTTTCTTT
23995398 TTTTTTTGTATTTTTTCTT
1 TTTTTTTGTATTTTTTCTT
23995417 GATTTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.03, C:0.08, G:0.03, T:0.87
Consensus pattern (20 bp):
TTTTTTTGTATTTTTTCTTT
Found at i:23995411 original size:18 final size:18
Alignment explanation
Indices: 23995373--23995411 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
23995363 TTGCTCTCTC
*
23995373 TTTCTATTTTTTTTCTTT
1 TTTCTATTTTTTTTCTAT
* *
23995391 TTTCTTTTTTTTTTGTAT
1 TTTCTATTTTTTTTCTAT
23995409 TTT
1 TTT
23995412 TTCTTGATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.05, C:0.08, G:0.03, T:0.85
Consensus pattern (18 bp):
TTTCTATTTTTTTTCTAT
Found at i:23995666 original size:10 final size:9
Alignment explanation
Indices: 23995650--23995675 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
23995640 ATCTCGTACC
23995650 CTTTTTTTT
1 CTTTTTTTT
23995659 CTTTTTTTT
1 CTTTTTTTT
23995668 CTTTTTTT
1 CTTTTTTT
23995676 AGAAATCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:24000022 original size:18 final size:18
Alignment explanation
Indices: 23999995--24000036 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
23999985 ATGTACTAAT
23999995 AACT-AAAATGCAATGAC
1 AACTAAAAATGCAATGAC
* *
24000012 AATTAAAAATGTAATGAC
1 AACTAAAAATGCAATGAC
24000030 AACTAAA
1 AACTAAA
24000037 TGCTATGCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.21
Consensus pattern (18 bp):
AACTAAAAATGCAATGAC
Found at i:24013133 original size:4 final size:4
Alignment explanation
Indices: 24013117--24013147 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
24013107 ACAAATGAGC
*
24013117 GAAT GAGT GAAT GAAT GAAT GAAT GAAT GAA
1 GAAT GAAT GAAT GAAT GAAT GAAT GAAT GAA
24013148 ATTGAGGCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.29, T:0.23
Consensus pattern (4 bp):
GAAT
Found at i:24017020 original size:30 final size:30
Alignment explanation
Indices: 24016984--24017043 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
24016974 AATTTTTCTA
24016984 GGATAAATGATAGATAAGCTCTTAAAAACT
1 GGATAAATGATAGATAAGCTCTTAAAAACT
24017014 GGATAAATGATAGATAAGCTCTTAAAAACT
1 GGATAAATGATAGATAAGCTCTTAAAAACT
24017044 AACCTAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.27
Consensus pattern (30 bp):
GGATAAATGATAGATAAGCTCTTAAAAACT
Found at i:24017954 original size:50 final size:50
Alignment explanation
Indices: 24017852--24018104 Score: 119
Period size: 50 Copynumber: 5.1 Consensus size: 50
24017842 TTTTTTAATG
* * * * * * *
24017852 AAAATCAATACTTTTTTTAAAAATCTAAATTTTTATTTCGAAAT-AGTTAA
1 AAAATAAAAACTTTATTTAAAAATCTAAATTTTTCTTT-AAAATAACTAAA
* *
24017902 AAAATAAAAACTTTATTTAAAAATTTAAATTTTTCTTTATAATAACTAAA
1 AAAATAAAAACTTTATTTAAAAATCTAAATTTTTCTTTAAAATAACTAAA
** * ** *
24017952 AAACAT---ATTTTTATTTTTAAAAATATAAACTTTCTTTCTTT--TTTAA-T-GA
1 AAA-ATAAAAACTTTA--TTTAAAAATCTAAA--TT-TTTCTTTAAAATAACTAAA
* ** * * * * **
24018001 AAATTATTAA-TTTACTTAAAAATCCAAACTTTTATTTCAAAATAGTTAAA
1 AAAATAAAAACTTTATTTAAAAATCTAAATTTTTCTTT-AAAATAACTAAA
* * *
24018051 AAAATCAAAACTTTATTTAAAATTTTAAACTTTTTCTTTAAAATAACTAAA
1 AAAATAAAAACTTTATTTAAAAATCTAAA-TTTTTCTTTAAAATAACTAAA
24018102 AAA
1 AAA
24018105 TAGATTTTTA
Statistics
Matches: 148, Mismatches: 38, Indels: 33
0.68 0.17 0.15
Matches are distributed among these distances:
45 6 0.04
46 1 0.01
48 19 0.13
49 8 0.05
50 65 0.44
51 33 0.22
52 9 0.06
53 7 0.05
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (50 bp):
AAAATAAAAACTTTATTTAAAAATCTAAATTTTTCTTTAAAATAACTAAA
Found at i:24018122 original size:150 final size:148
Alignment explanation
Indices: 24017709--24018349 Score: 731
Period size: 149 Copynumber: 4.4 Consensus size: 148
24017699 AAAACAAAAT
* * *
24017709 TACTATACTTCAAAAA-CAAAACTTTTATTTCGAAATAGTTAAGAAAAATAAAAATTTTATTTAA
1 TACTTTACTT-AAAAATCCAAACTTTTATTTCGAAATAGTTAA-AAAAATAAAAACTTTATTTAA
* * * * *
24017773 AAATTTAAGCTTTTTTCTTTAAAATCACT-AAAAATAGATTTTTATTTTTTTTAAAATCTAAACT
64 AAATTTAA--ATTTTTCTTTAAAATAACTAAAAAACAGATTTTTA--TTTTTAAAAATATAAACT
*
24017837 TTCTT-TTTTTTAATGAAAATCAA
125 TTTTTCTTTTTTAATGAAAATCAA
** * *
24017860 TACTTTTTTTAAAAATCTAAATTTTTATTTCGAAATAGTT-AAAAAATAAAAACTTTATTTAAAA
1 TACTTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAATAAAAACTTTATTTAAAA
* *
24017924 ATTTAAATTTTTCTTTATAATAACTAAAAAACATATTTTTATTTTTAAAAATATAAACTTTCTTT
66 ATTTAAATTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATAAACTTT-TTT
* *
24017989 CTTTTTTAATGAAAATTAT
130 CTTTTTTAATGAAAATCAA
* * *
24018008 TAATTTACTTAAAAATCCAAACTTTTATTTCAAAATAGTTAAAAAAATCAAAACTTTATTTAAAA
1 TACTTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAATAAAAACTTTATTTAAAA
* *
24018073 TTTTAAACTTTTTCTTTAAAATAACTAAAAAATAGATTTTTATTTTTAAAAATATAAACTTTTTT
66 ATTTAAA-TTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATAAACTTTTTT
*
24018138 CTTTTTTAATGAAAATCAG
130 CTTTTTTAATGAAAATCAA
* ** * *
24018157 TACTTT-CATAAAAAATTTAAACTTTTATTTCGAAATAGTTAAAAAAAATCAAAACTTTGTTTAA
1 TACTTTAC-TTAAAAATCCAAACTTTTATTTCGAAATAGTT-AAAAAAATAAAAACTTTATTTAA
* *
24018221 AAATTTAAATTTTTC-------T-A--AAAAAACAGATTTTTATCTTTAAAAATCTAAACTTTTT
64 AAATTTAAATTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATAAACTTTTT
* * *
24018276 CTTTTTTTTAAAGAAAATCAC
129 -TCTTTTTTAATGAAAATCAA
* * *
24018297 TATTTTACTTAAAAAT-CAAAGCTTTTATTTCGAAATTGTTTAAAAAA-AAAAAC
1 TACTTTACTTAAAAATCCAAA-CTTTTATTTCGAAATAGTTAAAAAAATAAAAAC
24018350 CAAAACTTTT
Statistics
Matches: 431, Mismatches: 48, Indels: 35
0.84 0.09 0.07
Matches are distributed among these distances:
138 5 0.01
139 44 0.10
140 47 0.11
141 2 0.00
142 1 0.00
146 18 0.04
147 18 0.04
148 64 0.15
149 116 0.27
150 87 0.20
151 29 0.07
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (148 bp):
TACTTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAATAAAAACTTTATTTAAAA
ATTTAAATTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATAAACTTTTTTC
TTTTTTAATGAAAATCAA
Found at i:24020868 original size:21 final size:21
Alignment explanation
Indices: 24020842--24020892 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
24020832 TACAGAATTC
*
24020842 TACCGATACTTGTGATATTTT
1 TACCGATACTTGTGATACTTT
24020863 TACCGATACTTGTGATACTTT
1 TACCGATACTTGTGATACTTT
*
24020884 TACTGATAC
1 TACCGATAC
24020893 AAGTGTAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (21 bp):
TACCGATACTTGTGATACTTT
Found at i:24021646 original size:26 final size:25
Alignment explanation
Indices: 24021617--24021716 Score: 80
Period size: 26 Copynumber: 3.9 Consensus size: 25
24021607 CCAGAAATTC
* *
24021617 AGCTTATACGAGCCCAAACAGAGTTT
1 AGCTT-TACGAGCCCAAACAGAATAT
24021643 AGCTCTTACGAGCCCAAACAGAATAT
1 AGCT-TTACGAGCCCAAACAGAATAT
* * *
24021669 CGCTTTTACGAG-CCAGATAGAAT-T
1 AGC-TTTACGAGCCCAAACAGAATAT
*
24021693 ATGCTCTTATGAG-CCAAACAGAAT
1 A-GCT-TTACGAGCCCAAACAGAAT
24021717 TACACTCATA
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
24 2 0.03
25 26 0.43
26 31 0.51
27 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (25 bp):
AGCTTTACGAGCCCAAACAGAATAT
Found at i:24021744 original size:27 final size:27
Alignment explanation
Indices: 24021644--24021824 Score: 151
Period size: 27 Copynumber: 6.9 Consensus size: 27
24021634 ACAGAGTTTA
*
24021644 GCTCTTACGAGCCCA-AA-CAGAA-TATC
1 GCTCTTACGAG-CCAGAATCAAAATTA-C
* * *
24021670 GCTTTTACGAGCCAG-AT-AGAATTAT
1 GCTCTTACGAGCCAGAATCAAAATTAC
* *
24021695 GCTCTTATGAGCCA-AA-CAGAATTAC
1 GCTCTTACGAGCCAGAATCAAAATTAC
* * * *
24021720 ACTCATACGAGCTAGAATCAAAATTAT
1 GCTCTTACGAGCCAGAATCAAAATTAC
* * * *
24021747 GCTCTTACGAGCTAAAATCAGAGTTAC
1 GCTCTTACGAGCCAGAATCAAAATTAC
24021774 GCTCTTACGAGCCAGAATCAAAATTAC
1 GCTCTTACGAGCCAGAATCAAAATTAC
* *
24021801 GCTTTTATGAGCCAGAATCAAAAT
1 GCTCTTACGAGCCAGAATCAAAAT
24021825 ATCTTCGTCG
Statistics
Matches: 125, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
25 38 0.30
26 14 0.11
27 73 0.58
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (27 bp):
GCTCTTACGAGCCAGAATCAAAATTAC
Found at i:24021820 original size:54 final size:53
Alignment explanation
Indices: 24021644--24021820 Score: 184
Period size: 54 Copynumber: 3.4 Consensus size: 53
24021634 ACAGAGTTTA
* * *
24021644 GCTCTTACGAGCCCAAA-CAGAA-TATCGCTTTTACGAGCCAG-AT-AGAATTAT
1 GCTCTTATGAG-CCAAATCAGAATTA-CGCTCTTACGAGCCAGAATCAAAATTAT
* * *
24021695 GCTCTTATGAGCCAAA-CAGAATTACACTCATACGAGCTAGAATCAAAATTAT
1 GCTCTTATGAGCCAAATCAGAATTACGCTCTTACGAGCCAGAATCAAAATTAT
* * * *
24021747 GCTCTTACGAGCTAAAATCAGAGTTACGCTCTTACGAGCCAGAATCAAAATTAC
1 GCTCTTATGAGC-CAAATCAGAATTACGCTCTTACGAGCCAGAATCAAAATTAT
*
24021801 GCTTTTATGAGCCAGAATCA
1 GCTCTTATGAGCCA-AATCA
24021821 AAATATCTTC
Statistics
Matches: 104, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
50 22 0.21
51 14 0.13
52 18 0.17
53 4 0.04
54 46 0.44
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (53 bp):
GCTCTTATGAGCCAAATCAGAATTACGCTCTTACGAGCCAGAATCAAAATTAT
Found at i:24030514 original size:17 final size:17
Alignment explanation
Indices: 24030492--24030549 Score: 66
Period size: 16 Copynumber: 3.5 Consensus size: 17
24030482 ATCTTCTTTG
24030492 AATCCCTAAAATATTAA
1 AATCCCTAAAATATTAA
*
24030509 AATCCCT-AAATATCAA
1 AATCCCTAAAATATTAA
* *
24030525 AATCCCCAAAA-ATTTA
1 AATCCCTAAAATATTAA
*
24030541 AATTCCTAA
1 AATCCCTAA
24030550 CCCAAGATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
16 24 0.71
17 10 0.29
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (17 bp):
AATCCCTAAAATATTAA
Found at i:24031450 original size:33 final size:33
Alignment explanation
Indices: 24031410--24031542 Score: 162
Period size: 33 Copynumber: 4.0 Consensus size: 33
24031400 TTGACTGCTA
***
24031410 GGGAGGGTGATGATGAAGTTATAGAAGTTGATG
1 GGGAGGGTGATGATGAAGGGGTAGAAGTTGATG
* **
24031443 GGCAGGGTGATGATGAAGGGGTAGAAACTGATG
1 GGGAGGGTGATGATGAAGGGGTAGAAGTTGATG
*
24031476 GGGAGGGTGATG-TAGGAGGGGTAGAAGTTGATG
1 GGGAGGGTGATGAT-GAAGGGGTAGAAGTTGATG
*
24031509 GGGAGGGCGATGATGAAGGGGTAGAA-TCTGATG
1 GGGAGGGTGATGATGAAGGGGTAGAAGT-TGATG
24031542 G
1 G
24031543 TAAAGGTGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
32 2 0.02
33 82 0.96
34 1 0.01
ACGTcount: A:0.28, C:0.03, G:0.48, T:0.21
Consensus pattern (33 bp):
GGGAGGGTGATGATGAAGGGGTAGAAGTTGATG
Found at i:24031564 original size:66 final size:66
Alignment explanation
Indices: 24031431--24031571 Score: 185
Period size: 66 Copynumber: 2.1 Consensus size: 66
24031421 GATGAAGTTA
* * * * *
24031431 TAGAAGTTGATGGGCAGGGTGATGATGAAGGGGTAGAAACTGATGGGGAGGGTGATGTAGGAGGG
1 TAGAAGTTGATGGGCAGGGCGATGATGAAGGGGTAGAAACTGATGGGAAAGGTGATCTAGGAAGG
24031496 G
66 G
* * *
24031497 TAGAAGTTGATGGGGAGGGCGATGATGAAGGGGTAGAATCTGATGGTAAAGGTGATCT-GGAAAG
1 TAGAAGTTGATGGGCAGGGCGATGATGAAGGGGTAGAAACTGATGGGAAAGGTGATCTAGG-AAG
24031561 GG
65 GG
*
24031563 TAAAAGTTG
1 TAGAAGTTG
24031572 TTCAGAAAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
65 2 0.03
66 63 0.97
ACGTcount: A:0.30, C:0.04, G:0.45, T:0.21
Consensus pattern (66 bp):
TAGAAGTTGATGGGCAGGGCGATGATGAAGGGGTAGAAACTGATGGGAAAGGTGATCTAGGAAGG
G
Found at i:24035978 original size:15 final size:15
Alignment explanation
Indices: 24035960--24035995 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
24035950 AATTTTCGAA
*
24035960 ATGATTAGGGATTTC
1 ATGATTAGAGATTTC
24035975 ATGATTAGAGATTTC
1 ATGATTAGAGATTTC
*
24035990 ACGATT
1 ATGATT
24035996 TTTGTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (15 bp):
ATGATTAGAGATTTC
Found at i:24055845 original size:15 final size:15
Alignment explanation
Indices: 24055825--24055854 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24055815 GCCCTTACTA
24055825 GAGCCACCTAGAGAC
1 GAGCCACCTAGAGAC
24055840 GAGCCACCTAGAGAC
1 GAGCCACCTAGAGAC
24055855 AATCCATCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.27, T:0.07
Consensus pattern (15 bp):
GAGCCACCTAGAGAC
Found at i:24059597 original size:869 final size:869
Alignment explanation
Indices: 24057183--24060667 Score: 6790
Period size: 869 Copynumber: 4.0 Consensus size: 869
24057173 TGGTAGTAAA
*
24057183 AAACACAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCCCATTGTGACAGATG
1 AAACAAAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCCCATTGTGACAGATG
24057248 GCTAATGCTTCACCTAGAAACTTTTGCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
66 GCTAATGCTTCACCTAGAAACTTTTGCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
24057313 TACCCCTTTTGACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCCTGATGTTC
131 TACCCCTTTTGACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCCTGATGTTC
24057378 ATCATTTGGGAAACACGTCCTTAGTCGAATCTGTTGTGTTGGAACTGAAAAACGCAGTGGACTTC
196 ATCATTTGGGAAACACGTCCTTAGTCGAATCTGTTGTGTTGGAACTGAAAAACGCAGTGGACTTC
24057443 TTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAAC
261 TTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAAC
24057508 ACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGAG
326 ACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGAG
*
24057573 GCCCCCTTCAATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCTT
391 GCCCCCTTCGATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCTT
24057638 TCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTTT
456 TCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTTT
*
24057703 AAAAATTCTACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATACATCTCATGA
521 AAAAATTCCACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATACATCTCATGA
24057768 TGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCATAAGCTCAACAAAAGGCCATTCA
586 TGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCATAAGCTCAACAAAAGGCCATTCA
* *
24057833 ACACGATCATAGGCTTTGCTCATACCGAGCTTCAAAGCCATCTACCCTTTCCTTCCAAGTCTTTT
651 ACACGATCATAGGCTTTGCTCATATCGAGCTTCAAAGCCATCTGCCCTTTCCTTCCAAGTCTTTT
24057898 GTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACACCCTGGAA
716 GTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACACCCTGGAA
*
24057963 CAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAATGATTGGCAGCTGTC
781 CAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAACGATTGGCAGCTGTC
24058028 TTTGCAATAATCTTGTATAGTACT
846 TTTGCAATAATCTTGTATAGTACT
24058052 AAACAAAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCCCATTGTGACAGATG
1 AAACAAAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCCCATTGTGACAGATG
24058117 GCTAATGCTTCACCTAGAAACTTTTGCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
66 GCTAATGCTTCACCTAGAAACTTTTGCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
*
24058182 TACCCCTTTTAACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCCTGATGTTC
131 TACCCCTTTTGACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCCTGATGTTC
24058247 ATCATTTGGGAAACACGTCCTTAGTCGAATCTGTTGTGTTGGAACTGAAAAAACGCAGTGGACTT
196 ATCATTTGGGAAACACGTCCTTAGTCGAATCTGTTGTGTTGGAACTG-AAAAACGCAGTGGACTT
24058312 CTTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAA
260 CTTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAA
24058377 CACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGA
325 CACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGA
24058442 GGCCCCCTTCGATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCT
390 GGCCCCCTTCGATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCT
24058507 TTCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTT
455 TTCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTT
*
24058572 TAAAAATTCCACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATATATCTCATG
520 TAAAAATTCCACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATACATCTCATG
*
24058637 ATGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCACAAGCTCAACAAAAGGCCATTC
585 ATGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCATAAGCTCAACAAAAGGCCATTC
*
24058702 AACACGATCATAGGCTTTGCTCATATCGAGCTTCAAAGCCATCTGCCCTTTCCTTTCAAGTCTTT
650 AACACGATCATAGGCTTTGCTCATATCGAGCTTCAAAGCCATCTGCCCTTTCCTTCCAAGTCTTT
* *
24058767 TGTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACAACCTAGA
715 TGTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACACCCTGGA
24058832 ACAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAACGATTGGCAGCTGT
780 ACAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAACGATTGGCAGCTGT
24058897 CTTTGCAATAATCTTGTATAGTACT
845 CTTTGCAATAATCTTGTATAGTACT
24058922 AAACAAAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCCCATTGTGACAGATG
1 AAACAAAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCCCATTGTGACAGATG
24058987 GCTAATGCTTCACCTAGAAACTTTTGCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
66 GCTAATGCTTCACCTAGAAACTTTTGCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
24059052 TACCCCTTTTGACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCCTGATGTTC
131 TACCCCTTTTGACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCCTGATGTTC
* *
24059117 ATCATTTGGGAAACACGTTCTTAGTCGAATCTGTTGTGTTGGAACTGAAAAACGCTGTGGACTTC
196 ATCATTTGGGAAACACGTCCTTAGTCGAATCTGTTGTGTTGGAACTGAAAAACGCAGTGGACTTC
24059182 TTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAAC
261 TTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAAC
24059247 ACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGAG
326 ACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGAG
24059312 GCCCCCTTCGATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCTT
391 GCCCCCTTCGATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCTT
24059377 TCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTTT
456 TCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTTT
24059442 AAAAATTCCACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATACATCTCATGA
521 AAAAATTCCACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATACATCTCATGA
24059507 TGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCATAAGCTCAACAAAAGGCCATTCA
586 TGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCATAAGCTCAACAAAAGGCCATTCA
24059572 ACACGATCATAGGCTTTGCTCATATCGAGCTTCAAAGCCATCTGCCCTTTCCTTCCAAGTCTTTT
651 ACACGATCATAGGCTTTGCTCATATCGAGCTTCAAAGCCATCTGCCCTTTCCTTCCAAGTCTTTT
24059637 GTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACACCCTGGAA
716 GTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACACCCTGGAA
24059702 CAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAACGATTGGCAGCTGTC
781 CAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAACGATTGGCAGCTGTC
24059767 TTTGCAATAATCTTGTATAGTACT
846 TTTGCAATAATCTTGTATAGTACT
*
24059791 AAACAAAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCTCATTGTGACAGATG
1 AAACAAAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCCCATTGTGACAGATG
*
24059856 GCTAATGCTTCACCTAGAAACTTTTTCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
66 GCTAATGCTTCACCTAGAAACTTTTGCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
*
24059921 TACCCCTTTTGACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCTTGATGTTC
131 TACCCCTTTTGACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCCTGATGTTC
* *
24059986 ATCATTTGGGAAACACGTCCTTAGTCGAATCTGTTGTGTTGGAACTGAAAAACGCTGTAGACTTC
196 ATCATTTGGGAAACACGTCCTTAGTCGAATCTGTTGTGTTGGAACTGAAAAACGCAGTGGACTTC
24060051 TTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAAC
261 TTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAAC
24060116 ACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGAG
326 ACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGAG
24060181 GCCCCCTTCGATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCTT
391 GCCCCCTTCGATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCTT
24060246 TCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTTT
456 TCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTTT
24060311 AAAAATTCCACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATACATCTCATGA
521 AAAAATTCCACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATACATCTCATGA
24060376 TGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCATAAGCTCAACAAAAGGCCATTCA
586 TGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCATAAGCTCAACAAAAGGCCATTCA
24060441 ACACGATCATAGGCTTTGCTCATATCGAGCTTCAAAGCCATCTGCCCTTTCCTTCCAAGTCTTTT
651 ACACGATCATAGGCTTTGCTCATATCGAGCTTCAAAGCCATCTGCCCTTTCCTTCCAAGTCTTTT
24060506 GTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACACCCTGGAA
716 GTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACACCCTGGAA
24060571 CAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAACGATTGGCAGCTGTC
781 CAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAACGATTGGCAGCTGTC
24060636 TTTGCAATAATCTTGTATAGTACT
846 TTTGCAATAATCTTGTATAGTACT
24060660 AAACAAAG
1 AAACAAAG
24060668 ACTAATTGGC
Statistics
Matches: 2590, Mismatches: 25, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
869 1733 0.67
870 857 0.33
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (869 bp):
AAACAAAGCATAGAATATGTAAGAAGAGCTTTTACAAATACCTCTTTACCCCATTGTGACAGATG
GCTAATGCTTCACCTAGAAACTTTTGCCCACATCTTATCTTTCAGACTTTAGAATGCCCTTCTTT
TACCCCTTTTGACCATATTAGGAAGGCCTAAATATTTCTTTGGTTCTGTAGAAATCCTGATGTTC
ATCATTTGGGAAACACGTCCTTAGTCGAATCTGTTGTGTTGGAACTGAAAAACGCAGTGGACTTC
TTAAAATTGATGCATTGCCCAGAAATATCTTCATATTCTCTTAGAATCTCTTTGAGAACAGTAAC
ACCCTCACTCGTCGCTTCACCAAAGAGTAGATAATCTTCAGTAAACATTAAGTGAGTGAGCTGAG
GCCCCCTTCGATAAACCTTCACCCTTTTATCAATCCTTTCAAGTTTCATTAGCATCGACAGCCTT
TCTCCACAAAACAAAAACAAATAAGGACTCAAAGGTTCACCTTAACGTAGGCTCCTTCCCAGTTT
AAAAATTCCACCAATCTGCCCATTTAAATCAATCGCATAGGAAACAGACTTAATACATCTCATGA
TGAAGTCCACCCAGGAATCTGTAAACCCTATTGCTCTCATCATAAGCTCAACAAAAGGCCATTCA
ACACGATCATAGGCTTTGCTCATATCGAGCTTCAAAGCCATCTGCCCTTTCCTTCCAAGTCTTTT
GTTTTTAAGCATATGAAGCACCTCATAGGCCAAGAGAACGTTGTTCGTAATGAGACACCCTGGAA
CAAAGACACTTTGTGCATCATCAATACACGAATCAAGTAGCCCTTGCAAACGATTGGCAGCTGTC
TTTGCAATAATCTTGTATAGTACT
Found at i:24066838 original size:6 final size:6
Alignment explanation
Indices: 24066827--24066856 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
24066817 TAACACATGT
*
24066827 ATCTCA ATCTCA ATCTCA ATCGCA ATCTCA
1 ATCTCA ATCTCA ATCTCA ATCTCA ATCTCA
24066857 TGATAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (6 bp):
ATCTCA
Done.