Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 85 of 182
Found at i:26683655 original size:3 final size:3
Alignment explanation
Indices: 26683647--26683680 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
26683637 GATAGGGGAG
26683647 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
26683681 AAGGATTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:26684606 original size:2 final size:2
Alignment explanation
Indices: 26684599--26684624 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26684589 AAATTACATA
26684599 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26684625 TGGGTTGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26692248 original size:41 final size:40
Alignment explanation
Indices: 26692192--26692370 Score: 182
Period size: 41 Copynumber: 4.4 Consensus size: 40
26692182 AAACGCTGCA
* *
26692192 AAAGGTAA-AGCATTAGTGGCGCTTATGGTAAAGCGCCGCT
1 AAAGGTAAGAGCATTAGCGACGCTTATGG-AAAGCGCCGCT
**
26692232 AAAGGTAAGAGCATTAGCGGTGCTTGTAT-GAAAGCGCCGCT
1 AAAGGTAAGAGCATTAGCGACGC-T-TATGGAAAGCGCCGCT
* * *
26692273 AAAGGTAATAGCATTAGCGACGCTTGTGGGAAAGCACCGCT
1 AAAGGTAAGAGCATTAGCGACGCTTAT-GGAAAGCGCCGCT
* * * *
26692314 GAAGGTCAGAGCACTAGCGACGCTTGTGGAGAAGCGCCGCT
1 AAAGGTAAGAGCATTAGCGACGCTTATGGA-AAGCGCCGCT
* *
26692355 AAAAGTCAGAGCATTA
1 AAAGGTAAGAGCATTA
26692371 CACAAACGCC
Statistics
Matches: 118, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.02
40 12 0.10
41 99 0.84
42 2 0.02
43 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.20
Consensus pattern (40 bp):
AAAGGTAAGAGCATTAGCGACGCTTATGGAAAGCGCCGCT
Found at i:26692307 original size:82 final size:81
Alignment explanation
Indices: 26692192--26692357 Score: 208
Period size: 82 Copynumber: 2.0 Consensus size: 81
26692182 AAACGCTGCA
* * * * * **
26692192 AAAGGTAAAGCATTAGTGGCGCTTATGGTAAAGCGCCGCTAAAGGTAAGAGCATTAGCGGTGCTT
1 AAAGGTAAAGCATTAGCGACGCTTATGGGAAAGCACCGCTAAAGGTAAGAGCACTAGCGACGCTT
*
26692257 GTATGA-AAGCGCCGCT
66 GT-GGAGAAGCGCCGCT
* * *
26692273 AAAGGTAATAGCATTAGCGACGCTTGTGGGAAAGCACCGCTGAAGGTCAGAGCACTAGCGACGCT
1 AAAGGTAA-AGCATTAGCGACGCTTATGGGAAAGCACCGCTAAAGGTAAGAGCACTAGCGACGCT
26692338 TGTGGAGAAGCGCCGCT
65 TGTGGAGAAGCGCCGCT
26692355 AAA
1 AAA
26692358 AGTCAGAGCA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 10 0.14
82 62 0.86
ACGTcount: A:0.30, C:0.19, G:0.31, T:0.19
Consensus pattern (81 bp):
AAAGGTAAAGCATTAGCGACGCTTATGGGAAAGCACCGCTAAAGGTAAGAGCACTAGCGACGCTT
GTGGAGAAGCGCCGCT
Found at i:26692422 original size:70 final size:70
Alignment explanation
Indices: 26692309--26692440 Score: 196
Period size: 70 Copynumber: 1.9 Consensus size: 70
26692299 TGGGAAAGCA
*
26692309 CCGCTGAAGGTCAGAGCACTAGCGACGCTTGTGGAGAAGCGCCGCTAAA-AGTCAGAGCATTACA
1 CCGCTAAAGGTCAGAGCACTAGCGACGCTTGTGGAGAAGCGCCGCTAAAGA-TCAGAGCATTACA
26692373 CAAACG
65 CAAACG
** *
26692379 CCGCTAAAGGTCATTGCATTAGCGACGCTTGTGG-GAAAGCGCCGCTAAAGATCAGAGCATTA
1 CCGCTAAAGGTCAGAGCACTAGCGACGCTTGTGGAG-AAGCGCCGCTAAAGATCAGAGCATTA
26692441 GTGGCGCTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
69 1 0.02
70 54 0.96
71 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.28, T:0.17
Consensus pattern (70 bp):
CCGCTAAAGGTCAGAGCACTAGCGACGCTTGTGGAGAAGCGCCGCTAAAGATCAGAGCATTACAC
AAACG
Found at i:26692439 original size:41 final size:41
Alignment explanation
Indices: 26692374--26692468 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
26692364 AGCATTACAC
* ** *
26692374 AAACGCCGCTAAAGGTCATTGCATTAGCGACGCTTGTGGGA
1 AAACGCCGCTAAAGATCAGAGCATTAGCGACGCTTGTGGAA
* * * *
26692415 AAGCGCCGCTAAAGATCAGAGCATTAGTGGCGCTTGTTGAA
1 AAACGCCGCTAAAGATCAGAGCATTAGCGACGCTTGTGGAA
26692456 AAACGCCGCTAAA
1 AAACGCCGCTAAA
26692469 AGTAGATTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (41 bp):
AAACGCCGCTAAAGATCAGAGCATTAGCGACGCTTGTGGAA
Found at i:26692463 original size:111 final size:111
Alignment explanation
Indices: 26692266--26692471 Score: 313
Period size: 111 Copynumber: 1.9 Consensus size: 111
26692256 TGTATGAAAG
* *
26692266 CGCCGCTAAAGGTAATAGCATTAGCGACGCTTGTGGGAAAGCACCGCTGAAGGTCAGAGCACTAG
1 CGCCGCTAAAGGTAATAGCATTAGCGACGCTTGTGGGAAAGCACCGCTAAAGATCAGAGCACTAG
* *
26692331 CGACGCTTGTGGAGAAGCGCCGCTAAAAGTCAGAGCATTACACAAA
66 CGACGCTTGTGGAAAAACGCCGCTAAAAGTCAGAGCATTACACAAA
* * * *
26692377 CGCCGCTAAAGGTCATTGCATTAGCGACGCTTGTGGGAAAGCGCCGCTAAAGATCAGAGCATTAG
1 CGCCGCTAAAGGTAATAGCATTAGCGACGCTTGTGGGAAAGCACCGCTAAAGATCAGAGCACTAG
* * *
26692442 TGGCGCTTGTTGAAAAACGCCGCTAAAAGT
66 CGACGCTTGTGGAAAAACGCCGCTAAAAGT
26692472 AGATTTTAAC
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
111 84 1.00
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (111 bp):
CGCCGCTAAAGGTAATAGCATTAGCGACGCTTGTGGGAAAGCACCGCTAAAGATCAGAGCACTAG
CGACGCTTGTGGAAAAACGCCGCTAAAAGTCAGAGCATTACACAAA
Found at i:26692537 original size:20 final size:20
Alignment explanation
Indices: 26692512--26692551 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26692502 TATTTAATTT
*
26692512 ATATTTCCATAAAAATATTA
1 ATATTTACATAAAAATATTA
**
26692532 ATATTTATTTAAAAATATTA
1 ATATTTACATAAAAATATTA
26692552 TACTATTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATTTACATAAAAATATTA
Found at i:26692895 original size:16 final size:18
Alignment explanation
Indices: 26692851--26692896 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
26692841 CCCTTAAACC
26692851 CTCTCTCCCTTT-TCTCT
1 CTCTCTCCCTTTCTCTCT
* *
26692868 CTCTTTCTCTTTCTCT-T
1 CTCTCTCCCTTTCTCTCT
26692885 C-CTCTCCCTTTC
1 CTCTCTCCCTTTC
26692897 ACCACCCCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 9 0.38
17 12 0.50
18 3 0.12
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (18 bp):
CTCTCTCCCTTTCTCTCT
Found at i:26695613 original size:23 final size:23
Alignment explanation
Indices: 26695583--26695628 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26695573 CGAGCTCTTC
26695583 ATGAAGCAAATTGGATGAATGAG
1 ATGAAGCAAATTGGATGAATGAG
26695606 ATGAAGCAAATTGGATGAATGAG
1 ATGAAGCAAATTGGATGAATGAG
26695629 CTAGTGCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.30, T:0.22
Consensus pattern (23 bp):
ATGAAGCAAATTGGATGAATGAG
Found at i:26698093 original size:43 final size:43
Alignment explanation
Indices: 26698019--26698244 Score: 267
Period size: 43 Copynumber: 5.3 Consensus size: 43
26698009 TTTGTTAATG
* *
26698019 TTAGCGGCGTTTGT-GTAAAAGCGCCGCTAAAGATCATGTTAT
1 TTAGCGGCATTTGTGGTAAAAGCGCCGCTAAAGATCATGTTCT
* * * *
26698061 TTAGCGGCGTTTGTGGTAAAAGCGCTGTTAAAGATCGTGTTCT
1 TTAGCGGCATTTGTGGTAAAAGCGCCGCTAAAGATCATGTTCT
* * *
26698104 TTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGACCATGTTTT
1 TTAGCGGCATTTGTGGTAAAAGCGCCGCTAAAGATCATGTTCT
* *
26698147 TTAGCGACATTTGTGGTAAAAGCGCCGCTAAAGAAT-ATGGTCT
1 TTAGCGGCATTTGTGGTAAAAGCGCCGCTAAAG-ATCATGTTCT
** * * *
26698190 TTAGCGGCATTTGTGGGGAAAGCGTCACTAAAGACCATGTTCT
1 TTAGCGGCATTTGTGGTAAAAGCGCCGCTAAAGATCATGTTCT
* *
26698233 ATAGCAGCATTT
1 TTAGCGGCATTT
26698245 TCCTCATATA
Statistics
Matches: 156, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
42 15 0.10
43 140 0.90
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
TTAGCGGCATTTGTGGTAAAAGCGCCGCTAAAGATCATGTTCT
Found at i:26701946 original size:158 final size:158
Alignment explanation
Indices: 26701651--26701978 Score: 469
Period size: 158 Copynumber: 2.1 Consensus size: 158
26701641 GTAACATTTC
* * * * ** * * *
26701651 TATATCATGTAGTGCTCACACAATCTGTGAAATGGGTTTGCTCACATGAGCTGTGGGTCGAGATC
1 TATAACATGTAATACTCACACAAGCTGTGAAATGGGCCTACTCACACGAGCTGTGGGTCAAGATC
* * *
26701716 ATAAGCTACACGATGCGACTCACACGAGCTGTGGAGAATCCTCAACACATGCCGAATCTCAGCCA
66 ATAAGCTACACAATGCGACTCACACGAGCTGTGCAGAATCCTCAACACATGCCGAATCTCAACCA
26701781 TCAGTAGTACATCTAAGACCAGCACCCA
131 TCAGTAGTACATCTAAGACCAGCACCCA
* *
26701809 TATAACATGTAATACTCACACGAGCTGTGAAATGGGCCTACTCACACGAGCTGTGGGTCAAGATG
1 TATAACATGTAATACTCACACAAGCTGTGAAATGGGCCTACTCACACGAGCTGTGGGTCAAGATC
* * *
26701874 ATAAGCTACACAATGCTG-CTCACACGAGCTGTGCAGAATCCTTAACATATGCCGGATCTCAACC
66 ATAAGCTACACAATGC-GACTCACACGAGCTGTGCAGAATCCTCAACACATGCCGAATCTCAACC
* *
26701938 ATCGGTAGTACATCTAAGACTAGCACCCA
130 ATCAGTAGTACATCTAAGACCAGCACCCA
26701967 TATAACATGTAA
1 TATAACATGTAA
26701979 ATCTCGAATT
Statistics
Matches: 150, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
158 149 0.99
159 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (158 bp):
TATAACATGTAATACTCACACAAGCTGTGAAATGGGCCTACTCACACGAGCTGTGGGTCAAGATC
ATAAGCTACACAATGCGACTCACACGAGCTGTGCAGAATCCTCAACACATGCCGAATCTCAACCA
TCAGTAGTACATCTAAGACCAGCACCCA
Found at i:26710363 original size:19 final size:18
Alignment explanation
Indices: 26710341--26710378 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 18
26710331 TTAATAATCC
26710341 AAAATCAAAATAATAATAAA
1 AAAAT-AAAATAAT-ATAAA
26710361 AAAATAAAATAATATAAA
1 AAAATAAAATAATATAAA
26710379 TTTGTAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 8 0.44
20 5 0.28
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAATAAAATAATATAAA
Found at i:26723153 original size:5 final size:5
Alignment explanation
Indices: 26723145--26723184 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
26723135 TATTTTTCAA
* *
26723145 TTCTT TTCTT TCCTT TTCTT TTATT TTCTT TTCTT TTCTT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT
26723185 CCAAATAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.78
Consensus pattern (5 bp):
TTCTT
Found at i:26724031 original size:11 final size:10
Alignment explanation
Indices: 26724012--26724053 Score: 57
Period size: 10 Copynumber: 3.9 Consensus size: 10
26724002 ACCCAACAGA
26724012 ATTTAAATTT
1 ATTTAAATTT
26724022 ATTATAAATTT
1 ATT-TAAATTT
26724033 AAGTTTAAATTT
1 -A-TTTAAATTT
26724045 ATTTAAATT
1 ATTTAAATT
26724054 AATAATGTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 11 0.38
11 8 0.28
12 8 0.28
13 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (10 bp):
ATTTAAATTT
Found at i:26725955 original size:29 final size:30
Alignment explanation
Indices: 26725853--26726319 Score: 346
Period size: 30 Copynumber: 15.9 Consensus size: 30
26725843 AAGGTCCTTG
* * * *
26725853 AACTGTCCAAAAATTATATTTTGACCCTCA
1 AACTTTCCAAAAATTACATTTTTACCCTCT
* *
26725883 AACTTTCCAAAAATTATATTTTGACCC-CT
1 AACTTTCCAAAAATTACATTTTTACCCTCT
* * *
26725912 AATTTTTTTC-AAAATTAAATTTTTACCCTCT
1 AA--CTTTCCAAAAATTACATTTTTACCCTCT
*
26725943 AA-TTTCCAAAAATTACATTTTTAACCT-T
1 AACTTTCCAAAAATTACATTTTTACCCTCT
* * *
26725971 AAACTTTTCAAAAATCACATTTTTGCCCT-T
1 -AACTTTCCAAAAATTACATTTTTACCCTCT
*
26726001 GAAC-TTCTAAAAATTACATTTTTACCC-CT
1 -AACTTTCCAAAAATTACATTTTTACCCTCT
*
26726030 GAACTTT-CAAAAATTACATTTTTACCCT-A
1 -AACTTTCCAAAAATTACATTTTTACCCTCT
* *
26726059 AACTTTCCAAAAATTACATTTTTGACTC-CA
1 AACTTTCCAAAAATTACATTTTT-ACCCTCT
* *
26726089 AACTTTCCAAAAATCACATTTTTACCCTCG
1 AACTTTCCAAAAATTACATTTTTACCCTCT
*
26726119 GAC-TTCCAAAAATTATCA-TTTTACCCT-T
1 AACTTTCCAAAAATTA-CATTTTTACCCTCT
* * *
26726147 AAATATCCAAAAA-TACCA-TTTTACCC-CA
1 AACTTTCCAAAAATTA-CATTTTTACCCTCT
* * * *
26726175 AAATGTCTAAAAATTACATTTTTGACCCT-G
1 AACTTTCCAAAAATTACATTTTT-ACCCTCT
* *
26726205 AACTTTCCAAAAATCACATTTTTGA-CCTCG
1 AACTTTCCAAAAATTACATTTTT-ACCCTCT
* * * *
26726235 AATTTTCCAAAAATCACATTTTTACCCCCG
1 AACTTTCCAAAAATTACATTTTTACCCTCT
* * *
26726265 AA-TGTCCAAAAATTACATTTTTCCCCTCG
1 AACTTTCCAAAAATTACATTTTTACCCTCT
* **
26726294 AA-TGTCC-AAAATTACCGTTTTACCCT
1 AACTTTCCAAAAATTACATTTTTACCCT
26726320 TGAGTATCCA
Statistics
Matches: 367, Mismatches: 48, Indels: 46
0.80 0.10 0.10
Matches are distributed among these distances:
28 53 0.14
29 152 0.41
30 154 0.42
31 8 0.02
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (30 bp):
AACTTTCCAAAAATTACATTTTTACCCTCT
Found at i:26725963 original size:59 final size:57
Alignment explanation
Indices: 26725860--26726291 Score: 297
Period size: 59 Copynumber: 7.4 Consensus size: 57
26725850 TTGAACTGTC
* * * *
26725860 CAAAAATTATATTTTGACCCTCAAACTTTCCAAAAATTATATTTTGACCCCTAATTTTTTT
1 CAAAAATTACATTTTTACCCT-AAACTTTCCAAAAATTACATTTTTACCCCTAA---TTTT
* * * *
26725921 C-AAAATTAAATTTTTACCCTCTAA-TTTCCAAAAATTACATTTTTAACCTTAAACTTTT
1 CAAAAATTACATTTTTACCCT-AAACTTTCCAAAAATTACATTTTTACCCCT-AA-TTTT
* * * * *
26725979 CAAAAATCACATTTTTGCCCTTGAAC-TTCTAAAAATTACATTTTTACCCCTGAACTTT
1 CAAAAATTACATTTTTACCC-TAAACTTTCCAAAAATTACATTTTTACCCCT-AATTTT
* * *
26726037 CAAAAATTACATTTTTACCCTAAACTTTCCAAAAATTACATTTTTGACTCCAAACTTTC
1 CAAAAATTACATTTTTACCCTAAACTTTCCAAAAATTACATTTTT-ACCCCTAA-TTTT
* ** * * *
26726096 CAAAAATCACATTTTTACCCTCGGAC-TTCCAAAAATTATCA-TTTTACCCTTAAATATC
1 CAAAAATTACATTTTTACCCT-AAACTTTCCAAAAATTA-CATTTTTACCCCT-AATTTT
* * * * *
26726154 CAAAAA-TACCA-TTTTACCCCAAAATGTCTAAAAATTACATTTTTGA-CCCTGAACTTTC
1 CAAAAATTA-CATTTTTACCCTAAACTTTCCAAAAATTACATTTTT-ACCCCT-AA-TTTT
* * * * * * *
26726212 CAAAAATCACATTTTTGA-CCTCGAATTTTCCAAAAATCACATTTTTACCCCCGAATGTC
1 CAAAAATTACATTTTT-ACCCT-AAACTTTCCAAAAATTACATTTTTA-CCCCTAATTTT
*
26726271 CAAAAATTACATTTTTCCCCT
1 CAAAAATTACATTTTTACCCT
26726292 CGAATGTCCA
Statistics
Matches: 296, Mismatches: 53, Indels: 46
0.75 0.13 0.12
Matches are distributed among these distances:
56 3 0.01
57 32 0.11
58 72 0.24
59 136 0.46
60 49 0.17
61 4 0.01
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (57 bp):
CAAAAATTACATTTTTACCCTAAACTTTCCAAAAATTACATTTTTACCCCTAATTTT
Found at i:26726066 original size:117 final size:116
Alignment explanation
Indices: 26725848--26726308 Score: 427
Period size: 117 Copynumber: 3.9 Consensus size: 116
26725838 CCCAAAAGGT
* * * * * * *
26725848 CCTTGAACTGTCCAAAAATTATA-TTTTGACCCTCAAACTTTCCAAAAATTATATTTTGACCCCT
1 CCTTAAACTTTCCAAAAATCACATTTTTG-CCCTCGAAC-TTCCAAAAATTACATTTTTACCCCT
* * * * *
26725912 -AATTTTTTTC-AAAATTAAATTTTTACCCTCTAATTTCCAAAAATTACATTTTTAA
64 GAA---TATCCAAAAATTACATTTTTACCCT-AAATTTCCAAAAATTACATTTTTGA
* * *
26725967 CCTTAAACTTTTCAAAAATCACATTTTTGCCCTTGAACTTCTAAAAATTACATTTTTACCCCTGA
1 CCTTAAACTTTCCAAAAATCACATTTTTGCCCTCGAACTTCCAAAAATTACATTTTTACCCCTGA
*
26726032 ACT-TTCAAAAATTACATTTTTACCCTAAACTTTCCAAAAATTACATTTTTGA
66 A-TATCCAAAAATTACATTTTTACCCTAAA-TTTCCAAAAATTACATTTTTGA
* * * *
26726084 -CTCCAAACTTTCCAAAAATCACATTTTTACCCTCGGACTTCCAAAAATTATCA-TTTTACCCTT
1 CCT-TAAACTTTCCAAAAATCACATTTTTGCCCTCGAACTTCCAAAAATTA-CATTTTTACCCCT
* * * *
26726147 AAATATCCAAAAA-TACCA-TTTTACCCCAAAATGTCTAAAAATTACATTTTTGA
64 GAATATCCAAAAATTA-CATTTTTA-CCCTAAATTTCCAAAAATTACATTTTTGA
* * * * * *
26726200 CCCTGAACTTTCCAAAAATCACATTTTTGACCTCGAATTTTCCAAAAATCACATTTTTACCCCCG
1 CCTTAAACTTTCCAAAAATCACATTTTTGCCCTCGAA-CTTCCAAAAATTACATTTTTACCCCTG
* * * *
26726265 AATGTCCAAAAATTACATTTTTCCCCTCGAATGTCC-AAAATTAC
65 AATATCCAAAAATTACATTTTTACCCT-AAATTTCCAAAAATTAC
26726309 CGTTTTACCC
Statistics
Matches: 285, Mismatches: 42, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
116 66 0.23
117 151 0.53
118 36 0.13
119 27 0.09
120 5 0.02
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (116 bp):
CCTTAAACTTTCCAAAAATCACATTTTTGCCCTCGAACTTCCAAAAATTACATTTTTACCCCTGA
ATATCCAAAAATTACATTTTTACCCTAAATTTCCAAAAATTACATTTTTGA
Found at i:26726167 original size:146 final size:145
Alignment explanation
Indices: 26726009--26726285 Score: 384
Period size: 146 Copynumber: 1.9 Consensus size: 145
26725999 TTGAACTTCT
* * *
26726009 AAAAATTACATTTTTACCCCTGAACTTTC-AAAAATTACATTTTT-ACCCTAAACTTTCCAAAAA
1 AAAAATTACA-TTTTACCCC-AAAATGTCTAAAAATTACATTTTTGACCCTAAACTTTCCAAAAA
* * *
26726072 TTACATTTTTGA-CTCCAAACTTTCCAAAAATCACATTTTTACCCTCGGACT-TCCAAAAATTAT
64 TCACATTTTTGACCT-CAAACTTTCCAAAAATCACATTTTTACCC-CCGAATGTCCAAAAATTA-
26726135 CATTTTACCCTTAAATATCC
126 CATTTTACCCTTAAATATCC
*
26726155 AAAAA-TACCATTTTACCCCAAAATGTCTAAAAATTACATTTTTGACCCTGAACTTTCCAAAAAT
1 AAAAATTA-CATTTTACCCCAAAATGTCTAAAAATTACATTTTTGACCCTAAACTTTCCAAAAAT
* *
26726219 CACATTTTTGACCTCGAATTTTCCAAAAATCACATTTTTACCCCCGAATGTCCAAAAATTACATT
65 CACATTTTTGACCTCAAACTTTCCAAAAATCACATTTTTACCCCCGAATGTCCAAAAATTACATT
26726284 TT
130 TT
26726286 TCCCCTCGAA
Statistics
Matches: 117, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
144 5 0.04
145 36 0.31
146 74 0.63
147 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (145 bp):
AAAAATTACATTTTACCCCAAAATGTCTAAAAATTACATTTTTGACCCTAAACTTTCCAAAAATC
ACATTTTTGACCTCAAACTTTCCAAAAATCACATTTTTACCCCCGAATGTCCAAAAATTACATTT
TACCCTTAAATATCC
Found at i:26726302 original size:146 final size:145
Alignment explanation
Indices: 26726038--26726318 Score: 397
Period size: 146 Copynumber: 1.9 Consensus size: 145
26726028 CTGAACTTTC
*
26726038 AAAAATTACATTTTTACCCTAAACTTTCCAAAAATTACATTTTTGACTCCAAACTTTCCAAAAAT
1 AAAAATTACATTTTTACCCTAAACTTTCCAAAAATCACATTTTTGACTCCAAACTTTCCAAAAAT
* * *
26726103 CACATTTTTACCCTCGGACTTCCAAAAATTATCATTTTACCCTTAAATATCCAAAAATACCATTT
66 CACATTTTTACCCTCCGAATTCCAAAAATTATCATTTTACCCTCAAATATCCAAAAATACCATTT
26726168 TACCCCAAAATGTCT
131 TACCCCAAAATGTCT
* * *
26726183 AAAAATTACATTTTTGACCCTGAACTTTCCAAAAATCACATTTTTGAC-CTCGAATTTTCCAAAA
1 AAAAATTACATTTTT-ACCCTAAACTTTCCAAAAATCACATTTTTGACTC-CAAACTTTCCAAAA
* * * *
26726247 ATCACATTTTTACCC-CCGAATGTCCAAAAATTA-CATTTTTCCCCTCGAATGTCCAAAATTACC
64 ATCACATTTTTACCCTCCGAAT-TCCAAAAATTATCA-TTTTACCCTCAAATATCCAAAAATACC
*
26726310 GTTTTACCC
127 ATTTTACCC
26726319 TTGAGTATCC
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
145 22 0.18
146 98 0.82
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.34
Consensus pattern (145 bp):
AAAAATTACATTTTTACCCTAAACTTTCCAAAAATCACATTTTTGACTCCAAACTTTCCAAAAAT
CACATTTTTACCCTCCGAATTCCAAAAATTATCATTTTACCCTCAAATATCCAAAAATACCATTT
TACCCCAAAATGTCT
Found at i:26726343 original size:29 final size:29
Alignment explanation
Indices: 26725930--26726343 Score: 242
Period size: 29 Copynumber: 14.2 Consensus size: 29
26725920 TCAAAATTAA
* * *
26725930 ATTTTTACCCTCTAATTTCCAAAAATTAC
1 ATTTTTACCCTCGAATGTCCAAAAATCAC
* ** * *
26725959 ATTTTTAACCTTAAACTTTTCAAAAATCAC
1 ATTTTTACCCTCGAA-TGTCCAAAAATCAC
* * * *
26725989 ATTTTTGCCCTTGAACT-TCTAAAAATTAC
1 ATTTTTACCCTCGAA-TGTCCAAAAATCAC
* *
26726018 ATTTTTACCC-CTGAACT-TTCAAAAATTAC
1 ATTTTTACCCTC-GAA-TGTCCAAAAATCAC
* * *
26726047 ATTTTTACCCT-AAACTTTCCAAAAATTAC
1 ATTTTTACCCTCGAA-TGTCCAAAAATCAC
* * *
26726076 ATTTTTGACTC-CAAACTTTCCAAAAATCAC
1 ATTTTT-ACCCTCGAA-TGTCCAAAAATCAC
* *
26726106 ATTTTTACCCTCGGACT-TCCAAAAATTATC
1 ATTTTTACCCTC-GAATGTCCAAAAATCA-C
** *
26726136 A-TTTTACCCTTAAATATCCAAAAAT-ACC
1 ATTTTTACCCTCGAATGTCCAAAAATCA-C
* * *
26726164 A-TTTTACCC-CAAAATGTCTAAAAATTAC
1 ATTTTTACCCTC-GAATGTCCAAAAATCAC
*
26726192 ATTTTTGACCCT-GAACTTTCCAAAAATCAC
1 ATTTTT-ACCCTCGAA-TGTCCAAAAATCAC
*
26726222 ATTTTTGA-CCTCGAATTTTCCAAAAATCAC
1 ATTTTT-ACCCTCGAA-TGTCCAAAAATCAC
* *
26726252 ATTTTTACCCCCGAATGTCCAAAAATTAC
1 ATTTTTACCCTCGAATGTCCAAAAATCAC
* *
26726281 ATTTTTCCCCTCGAATGTCC-AAAATTAC
1 ATTTTTACCCTCGAATGTCCAAAAATCAC
** * * * *
26726309 CGTTTTACCCTTGAGTATCCAAAAATCAT
1 ATTTTTACCCTCGAATGTCCAAAAATCAC
26726338 ATTTTT
1 ATTTTT
26726344 GACTCTGCTT
Statistics
Matches: 316, Mismatches: 50, Indels: 38
0.78 0.12 0.09
Matches are distributed among these distances:
28 53 0.17
29 154 0.49
30 108 0.34
31 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (29 bp):
ATTTTTACCCTCGAATGTCCAAAAATCAC
Found at i:26727605 original size:2 final size:2
Alignment explanation
Indices: 26727598--26727628 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26727588 CACGCCTAAG
26727598 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26727629 CAAACATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26744193 original size:16 final size:16
Alignment explanation
Indices: 26744154--26744211 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
26744144 AGGGGGTCTT
26744154 GGGCAGAGGAAGCATC
1 GGGCAGAGGAAGCATC
** *
26744170 AAGAAGAGGAAGCATC
1 GGGCAGAGGAAGCATC
* *
26744186 GGGCAGAGGAAACATT
1 GGGCAGAGGAAGCATC
26744202 GGGCAGAGGA
1 GGGCAGAGGA
26744212 GGAGTCTCAG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.14, G:0.41, T:0.07
Consensus pattern (16 bp):
GGGCAGAGGAAGCATC
Found at i:26745146 original size:98 final size:98
Alignment explanation
Indices: 26744975--26745315 Score: 459
Period size: 98 Copynumber: 3.5 Consensus size: 98
26744965 CGATCTGCAT
* * *
26744975 GGTACTAAATTCGCCGTTACGACTTAAATTTTTCCCTTCATG-TCTCTGAGGTACAAGGTTTGCC
1 GGTACTAGATTCGCCGTTACGACTTAAATCTTTCCCTTCATGCT-TCTGAGGTACAAGGTTCGCC
*
26745039 ATTGCGACTTAAACCTTTCCCTTTGTATCTTCAA
65 ATTGCGACTTAAACCTTTCCCTTTGTATCTTCGA
* * * *
26745073 GGTACTAGATTCGCCGTTACGGCTTAAATCTTTCCCTTCAAGCTTATGAGGTACAAGGTTCGTCA
1 GGTACTAGATTCGCCGTTACGACTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGCCA
* *** *
26745138 TTGTGACTTAAACCTTTCCCTCCATATCTTCGT
66 TTGCGACTTAAACCTTTCCCTTTGTATCTTCGA
* * *
26745171 GGTACTGGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATGCTTCTGAGGTATAAGGTTCGCCA
1 GGTACTAGATTCGCCGTTACGACTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGCCA
*
26745236 TTGCGACTTAAACCTTTCCCTTTGTATCTTCGC
66 TTGCGACTTAAACCTTTCCCTTTGTATCTTCGA
* * ** *
26745269 GGTACTGGGTTCGCCGTTGTGGCTTAAATCTTTCCCTTCATGTCTTC
1 GGTACTAGATTCGCCGTTACGACTTAAATCTTTCCCTTCATG-CTTC
26745316 ATGGTAATGA
Statistics
Matches: 213, Mismatches: 28, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
98 208 0.98
99 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (98 bp):
GGTACTAGATTCGCCGTTACGACTTAAATCTTTCCCTTCATGCTTCTGAGGTACAAGGTTCGCCA
TTGCGACTTAAACCTTTCCCTTTGTATCTTCGA
Found at i:26745315 original size:49 final size:49
Alignment explanation
Indices: 26744975--26745315 Score: 287
Period size: 49 Copynumber: 7.0 Consensus size: 49
26744965 CGATCTGCAT
** * * *
26744975 GGTACTAAATTCGCCGTTACGACTTAAATTTTTCCCTTCATGTC-TCTGA
1 GGTACTAGGTTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTC-GA
* * * ** * *
26745024 GGTACAAGGTTTGCCATTGCGACTTAAACCTTTCCCTTTGTATCTTCAA
1 GGTACTAGGTTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGA
* * * * * *
26745073 GGTACTAGATTCGCCGTTACGGCTTAAATCTTTCCCTTCAAG-CTTATGA
1 GGTACTAGGTTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTT-CGA
* * * * * * *
26745122 GGTACAAGGTTCGTCATTGTGACTTAAACCTTTCCCTCCATATCTTCGT
1 GGTACTAGGTTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGA
*
26745171 GGTACT-GGATTCGCCGTTGCGACTTAAATCTTTCCCTTCATG-CTTCTGA
1 GGTACTAGG-TTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTC-GA
* ** * *
26745220 GGTA-TAAGGTTCGCCATTGCGACTTAAACCTTTCCCTTTGTATCTTCGC
1 GGTACT-AGGTTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGA
* * * *
26745269 GGTACTGGGTTCGCCGTTGTGGCTTAAATCTTTCCCTTCATGTCTTC
1 GGTACTAGGTTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTC
26745316 ATGGTAATGA
Statistics
Matches: 223, Mismatches: 60, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
48 10 0.04
49 201 0.90
50 12 0.05
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (49 bp):
GGTACTAGGTTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGA
Found at i:26757415 original size:12 final size:12
Alignment explanation
Indices: 26757382--26757416 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
26757372 AAATTTGAAG
*
26757382 AAAAAAT-AAAC
1 AAAAAATAAAAT
26757393 AAAAAATAAAAT
1 AAAAAATAAAAT
26757405 AAAAAATAAAAT
1 AAAAAATAAAAT
26757417 TCATAGTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 7 0.32
12 15 0.68
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:26758364 original size:16 final size:16
Alignment explanation
Indices: 26758345--26758386 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
26758335 AGGTGGTCTT
*
26758345 GGGCAGAGGAAGCATC
1 GGGCAGAGGAAACATC
*
26758361 GGGCAGAGGAAACATT
1 GGGCAGAGGAAACATC
26758377 GGGCAGAGGA
1 GGGCAGAGGA
26758387 GGAGTCTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.45, T:0.07
Consensus pattern (16 bp):
GGGCAGAGGAAACATC
Found at i:26766626 original size:12 final size:12
Alignment explanation
Indices: 26766572--26766625 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
26766562 CTTCCTCATT
* *
26766572 TTCTTCAAGATC
1 TTCTTCAGGGTC
26766584 TTCTTCAGGGTC
1 TTCTTCAGGGTC
* *
26766596 TTCCTCAGGATC
1 TTCTTCAGGGTC
*
26766608 TTCTTCTGGGTC
1 TTCTTCAGGGTC
26766620 TTCTTC
1 TTCTTC
26766626 TTCTTCTTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.11, C:0.28, G:0.17, T:0.44
Consensus pattern (12 bp):
TTCTTCAGGGTC
Found at i:26807369 original size:26 final size:26
Alignment explanation
Indices: 26807309--26807363 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
26807299 CTTTACTTAC
*
26807309 TTAACTTCTAATATCTACTAATCTGT
1 TTAACTTCTAATATCTACTAATCTAT
*
26807335 TTAACTTCTAATCTCTACTAATCTAT
1 TTAACTTCTAATATCTACTAATCTAT
26807361 TTA
1 TTA
26807364 CTTTCTGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.47
Consensus pattern (26 bp):
TTAACTTCTAATATCTACTAATCTAT
Found at i:26814587 original size:17 final size:18
Alignment explanation
Indices: 26814561--26814602 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
26814551 ATAGTTTGCA
*
26814561 TGCA-TTTTA-TTGTCAT
1 TGCATTTTTATTTGTCAC
26814577 TGCATTTTTATTTTGTCAC
1 TGCATTTTTA-TTTGTCAC
26814596 TGCATTT
1 TGCATTT
26814603 CTTTTGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 4 0.18
17 5 0.23
19 13 0.59
ACGTcount: A:0.17, C:0.14, G:0.12, T:0.57
Consensus pattern (18 bp):
TGCATTTTTATTTGTCAC
Found at i:26815214 original size:10 final size:10
Alignment explanation
Indices: 26815199--26815232 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
26815189 AAGGAAAATG
26815199 AGAAAAAGAA
1 AGAAAAAGAA
26815209 AGAAAAAGAA
1 AGAAAAAGAA
26815219 GAGAAAAATGAA
1 -AGAAAAA-GAA
26815231 AG
1 AG
26815233 GAAGAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 9 0.41
12 3 0.14
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (10 bp):
AGAAAAAGAA
Found at i:26815223 original size:11 final size:11
Alignment explanation
Indices: 26815198--26815226 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
26815188 AAAGGAAAAT
26815198 GAGAAAAAGAA
1 GAGAAAAAGAA
26815209 -AGAAAAAGAA
1 GAGAAAAAGAA
26815219 GAGAAAAA
1 GAGAAAAA
26815227 TGAAAGGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
GAGAAAAAGAA
Found at i:26828728 original size:34 final size:34
Alignment explanation
Indices: 26828685--26828754 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
26828675 TGACTTTTGG
26828685 ATTATGAACAAGAATTAGAAACTTTATGATTAAA
1 ATTATGAACAAGAATTAGAAACTTTATGATTAAA
26828719 ATTATGAACAAGAATTAGAAACTTTATGATTAAA
1 ATTATGAACAAGAATTAGAAACTTTATGATTAAA
26828753 AT
1 AT
26828755 CAAAAGAGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (34 bp):
ATTATGAACAAGAATTAGAAACTTTATGATTAAA
Found at i:26835114 original size:12 final size:12
Alignment explanation
Indices: 26835097--26835126 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26835087 AAACAAAATT
26835097 AGCAAAGTCACA
1 AGCAAAGTCACA
*
26835109 AGCAAAGTCATA
1 AGCAAAGTCACA
26835121 AGCAAA
1 AGCAAA
26835127 AATGTCACCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.20, G:0.17, T:0.10
Consensus pattern (12 bp):
AGCAAAGTCACA
Found at i:26844225 original size:13 final size:14
Alignment explanation
Indices: 26844207--26844236 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26844197 GTCAACGCAA
26844207 TCAGA-GTTAAATG
1 TCAGAGGTTAAATG
26844220 TCAGAGGTTAAATG
1 TCAGAGGTTAAATG
26844234 TCA
1 TCA
26844237 ATGTACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (14 bp):
TCAGAGGTTAAATG
Found at i:26855546 original size:26 final size:26
Alignment explanation
Indices: 26855517--26855586 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
26855507 CGAATATGTC
26855517 AGCTTGTGTGAGCAACCCTAATCTAA
1 AGCTTGTGTGAGCAACCCTAATCTAA
*
26855543 AGCTTGTGTGAGCAACCCTAGTCTAA
1 AGCTTGTGTGAGCAACCCTAATCTAA
*
26855569 AGCTTGTGTAAGCAACCC
1 AGCTTGTGTGAGCAACCC
26855587 AAATATGTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
AGCTTGTGTGAGCAACCCTAATCTAA
Found at i:26856319 original size:22 final size:20
Alignment explanation
Indices: 26856279--26856319 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
26856269 GTCTGAAATG
*
26856279 GTTAAGTGTATGGTTGAATA
1 GTTAAGTGTATAGTTGAATA
26856299 GTTAAGTTGTATAAGTTGAAT
1 GTTAAG-TGTAT-AGTTGAAT
26856320 TGAAATGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 5 0.28
22 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.27, T:0.41
Consensus pattern (20 bp):
GTTAAGTGTATAGTTGAATA
Found at i:26860112 original size:26 final size:27
Alignment explanation
Indices: 26860060--26860114 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
26860050 GTTTTCACTA
* *
26860060 TCTAGAGTTTTTCTCAGTTTATTGTTT
1 TCTAGAGTTTTTCTCAGTCTATAGTTT
* *
26860087 TCTATAGTTTTT-TTAGTCTATAGTTT
1 TCTAGAGTTTTTCTCAGTCTATAGTTT
26860113 TC
1 TC
26860115 ACATCTATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.16, C:0.11, G:0.13, T:0.60
Consensus pattern (27 bp):
TCTAGAGTTTTTCTCAGTCTATAGTTT
Found at i:26869420 original size:24 final size:24
Alignment explanation
Indices: 26869383--26869441 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
26869373 TCCTCCCCCT
*
26869383 TTATGTCTCACTTCATCTCACC-TCC
1 TTATTTCTC-CTTC-TCTCACCTTCC
*
26869408 TTGTTTCTCCTTCTCTCACCTTCC
1 TTATTTCTCCTTCTCTCACCTTCC
26869432 TTATTTCTCC
1 TTATTTCTCC
26869442 ATTTTTAGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.23
24 16 0.53
25 7 0.23
ACGTcount: A:0.10, C:0.39, G:0.03, T:0.47
Consensus pattern (24 bp):
TTATTTCTCCTTCTCTCACCTTCC
Found at i:26870234 original size:13 final size:13
Alignment explanation
Indices: 26870216--26870240 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26870206 ATCAAAAGGC
26870216 AAATAAAAACTAA
1 AAATAAAAACTAA
26870229 AAATAAAAACTA
1 AAATAAAAACTA
26870241 TATGCTATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATAAAAACTAA
Found at i:26874114 original size:20 final size:19
Alignment explanation
Indices: 26874085--26874127 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
26874075 AGTGGATTTT
*
26874085 GAAAAGAATAAAATAAAAG
1 GAAAAAAATAAAATAAAAG
* *
26874104 AGAAAAAAATAGAATTAAAG
1 -GAAAAAAATAAAATAAAAG
26874124 GAAA
1 GAAA
26874128 GATTTAAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (19 bp):
GAAAAAAATAAAATAAAAG
Found at i:26874563 original size:16 final size:17
Alignment explanation
Indices: 26874542--26874573 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26874532 TTTTAATCAT
26874542 TATAAACACA-ATAATA
1 TATAAACACATATAATA
26874558 TATAAACACATATAAT
1 TATAAACACATATAAT
26874574 TGAAGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.28
Consensus pattern (17 bp):
TATAAACACATATAATA
Found at i:26878180 original size:5 final size:5
Alignment explanation
Indices: 26878170--26878195 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26878160 CATGCCCAGC
26878170 TCTTT TCTTT TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT T
26878196 TTAAGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TCTTT
Found at i:26878407 original size:5 final size:5
Alignment explanation
Indices: 26878397--26878426 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
26878387 TTGTTACTTG
26878397 AAATT AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT AAATT
26878427 TTATTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:26878575 original size:16 final size:18
Alignment explanation
Indices: 26878554--26878591 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
26878544 AAGTTATCGA
26878554 TTATTTACTT-GAAA-AT
1 TTATTTACTTAGAAATAT
*
26878570 TTATTTTCTTAGAAATAT
1 TTATTTACTTAGAAATAT
26878588 TTAT
1 TTAT
26878592 GAAAAGATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.47
17 4 0.21
18 6 0.32
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (18 bp):
TTATTTACTTAGAAATAT
Found at i:26882690 original size:31 final size:32
Alignment explanation
Indices: 26882629--26882708 Score: 112
Period size: 31 Copynumber: 2.6 Consensus size: 32
26882619 AAAAAAATAG
26882629 AATAAAAGGG--TAATTTTAAAAAGGAATAAA
1 AATAAAAGGGTTTAATTTTAAAAAGGAATAAA
*
26882659 AATAAAAGGGTTTAATTTTAACAA-GAATAAA
1 AATAAAAGGGTTTAATTTTAAAAAGGAATAAA
* *
26882690 AATAGAAGGATTTAATTTT
1 AATAAAAGGGTTTAATTTT
26882709 TTAAAAAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
30 10 0.22
31 24 0.53
32 11 0.24
ACGTcount: A:0.54, C:0.01, G:0.15, T:0.30
Consensus pattern (32 bp):
AATAAAAGGGTTTAATTTTAAAAAGGAATAAA
Found at i:26883889 original size:12 final size:12
Alignment explanation
Indices: 26883872--26883896 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26883862 TGTTTTTTTC
26883872 TTCTCTGTCTTT
1 TTCTCTGTCTTT
26883884 TTCTCTGTCTTT
1 TTCTCTGTCTTT
26883896 T
1 T
26883897 GTCTTTGCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.08, T:0.68
Consensus pattern (12 bp):
TTCTCTGTCTTT
Found at i:26884564 original size:6 final size:6
Alignment explanation
Indices: 26884544--26884623 Score: 71
Period size: 6 Copynumber: 14.0 Consensus size: 6
26884534 GACCGGGCCT
* * *
26884544 TTTAAA TTT-AT TTTAAA TTTAGA TTT--A TTTAAA TTTGAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
26884589 TAT-AA TTTAAA TTTAAA TTT-AT TTTCAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA
26884624 AAAAGAATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
4 4 0.07
5 12 0.20
6 39 0.66
7 4 0.07
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:26884569 original size:17 final size:16
Alignment explanation
Indices: 26884544--26884603 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
26884534 GACCGGGCCT
26884544 TTTAAATTTATTTTAAA
1 TTTAAATTTA-TTTAAA
*
26884561 TTTAGATTTATTTAAA
1 TTTAAATTTATTTAAA
* **
26884577 TTTGAATTTAAATATAA
1 TTTAAATTTATTTA-AA
26884594 TTTAAATTTA
1 TTTAAATTTA
26884604 AATTTATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
16 16 0.44
17 20 0.56
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TTTAAATTTATTTAAA
Found at i:26884579 original size:23 final size:23
Alignment explanation
Indices: 26884555--26884609 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
26884545 TTAAATTTAT
* *
26884555 TTTAAATTTAGAT-TTATTTAAA
1 TTTAAATTTAAATATAATTTAAA
*
26884577 TTTGAATTTAAATATAATTTAAA
1 TTTAAATTTAAATATAATTTAAA
26884600 TTTAAATTTA
1 TTTAAATTTA
26884610 TTTTCAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 11 0.39
23 17 0.61
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
TTTAAATTTAAATATAATTTAAA
Found at i:26884585 original size:16 final size:16
Alignment explanation
Indices: 26884548--26884586 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
26884538 GGGCCTTTTA
26884548 AATTTATTTTAAATTT
1 AATTTATTTTAAATTT
26884564 AGATTTA-TTTAAATTT
1 A-ATTTATTTTAAATTT
26884580 GAATTTA
1 -AATTTA
26884587 AATATAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (16 bp):
AATTTATTTTAAATTT
Found at i:26884604 original size:17 final size:17
Alignment explanation
Indices: 26884575--26884623 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
26884565 GATTTATTTA
*
26884575 AATTTGAATTTAAATAT
1 AATTTAAATTTAAATAT
*
26884592 AATTTAAATTTAAATTT
1 AATTTAAATTTAAATAT
*
26884609 ATTTTCAAATTTAAA
1 AATTT-AAATTTAAA
26884624 AAAAGAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 19 0.68
18 9 0.32
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
AATTTAAATTTAAATAT
Found at i:26885358 original size:19 final size:19
Alignment explanation
Indices: 26885334--26885388 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
26885324 TTAAATGTTG
* *
26885334 GTTAATATTACTAATAATT
1 GTTAATAATAATAATAATT
26885353 GTTAATAATAATAATAA-T
1 GTTAATAATAATAATAATT
**
26885371 AATAATAATAATAATAAT
1 GTTAATAATAATAATAAT
26885389 AATAATAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 16 0.52
19 15 0.48
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (19 bp):
GTTAATAATAATAATAATT
Found at i:26885361 original size:3 final size:3
Alignment explanation
Indices: 26885355--26885415 Score: 95
Period size: 3 Copynumber: 20.0 Consensus size: 3
26885345 TAATAATTGT
**
26885355 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26885403 TAA TAA TTAA TAA
1 TAA TAA -TAA TAA
26885416 CAAAAAGAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
3 50 0.94
4 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:26886477 original size:30 final size:30
Alignment explanation
Indices: 26886443--26886539 Score: 115
Period size: 30 Copynumber: 3.2 Consensus size: 30
26886433 TTAGACCTTT
26886443 AAACTTTTCCAAAATTATATTTTGACCCCC
1 AAACTTTTCCAAAATTATATTTTGACCCCC
*
26886473 AAACTTCTCCAAAATTATATTTTGACCCCC
1 AAACTTTTCCAAAATTATATTTTGACCCCC
* * * * * *
26886503 GAAC-TTGCTAAAAATTACATTTTTACCCTC
1 AAACTTTTC-CAAAATTATATTTTGACCCCC
26886533 AAACTTT
1 AAACTTT
26886540 CTAAAAATCC
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
29 2 0.04
30 52 0.93
31 2 0.04
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (30 bp):
AAACTTTTCCAAAATTATATTTTGACCCCC
Found at i:26886544 original size:30 final size:30
Alignment explanation
Indices: 26886453--26886547 Score: 120
Period size: 30 Copynumber: 3.2 Consensus size: 30
26886443 AAACTTTTCC
*
26886453 AAAATTATATTTTGACCCCCAAAC-TTCTCC
1 AAAATTATATTTTGACCCCCAAACTTTCT-A
* *
26886483 AAAATTATATTTTGACCCCCGAACTTGCTA
1 AAAATTATATTTTGACCCCCAAACTTTCTA
* * *
26886513 AAAATTACATTTTTACCCTCAAACTTTCTA
1 AAAATTATATTTTGACCCCCAAACTTTCTA
26886543 AAAAT
1 AAAAT
26886548 CCATTTATGA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
30 53 0.95
31 3 0.05
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (30 bp):
AAAATTATATTTTGACCCCCAAACTTTCTA
Found at i:26886561 original size:30 final size:30
Alignment explanation
Indices: 26886453--26886561 Score: 105
Period size: 30 Copynumber: 3.6 Consensus size: 30
26886443 AAACTTTTCC
* * *
26886453 AAAATTATATTTTGACCCCCAAACTT-CTCC
1 AAAATTACATTTTGACCCTCAAACTTGCT-A
* * *
26886483 AAAATTATATTTTGACCCCCGAACTTGCTA
1 AAAATTACATTTTGACCCTCAAACTTGCTA
* *
26886513 AAAATTACATTTTTACCCTCAAACTTTCTA
1 AAAATTACATTTTGACCCTCAAACTTGCTA
*
26886543 AAAA-TCCATTTATGACCCT
1 AAAATTACATTT-TGACCCT
26886562 AATTTCAGCA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 6 0.09
30 60 0.88
31 2 0.03
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.35
Consensus pattern (30 bp):
AAAATTACATTTTGACCCTCAAACTTGCTA
Found at i:26886644 original size:29 final size:27
Alignment explanation
Indices: 26886596--26886674 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 27
26886586 ACCCCCAAAC
*
26886596 TTTCCAAAATT-CCATTTTTGACCTCGATT
1 TTTCCAAAATTACCA-TTTTG-CCTCGA-G
*
26886625 TTTCCAAAATTACCATTTTGCCTTAGAG
1 TTTCCAAAATTACCATTTTGCC-TCGAG
* *
26886653 TGTCTAAAATTACCATTTTGCC
1 TTTCCAAAATTACCATTTTGCC
26886675 CTCGGGTACT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
28 22 0.50
29 19 0.43
30 3 0.07
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.42
Consensus pattern (27 bp):
TTTCCAAAATTACCATTTTGCCTCGAG
Found at i:26891889 original size:108 final size:108
Alignment explanation
Indices: 26891694--26891976 Score: 467
Period size: 108 Copynumber: 2.6 Consensus size: 108
26891684 GACCATGGTC
* *
26891694 ATGGCAAGTGAAGACCATATCATGTAAGACCTAGTTTGGGATTATGGCATCATATGGGGAAAGGA
1 ATGGCAAGTGAAGACCATATCGTGTAAGACCTAGTTTGGGATTATGACATCATATGGGGAAAGGA
*
26891759 AGTTCATATAGTGTAAGACCTAGTCGTATTGTTATGGCATCAT
66 AGTTCATATAGTGTAAGACCTAGTCGTATTGCTATGGCATCAT
* * *
26891802 ATGGAAAGTGAAGACCATAACGTGTAAGACCTAGTTTGGGATTATGACATCATATGGAGAAAGGA
1 ATGGCAAGTGAAGACCATATCGTGTAAGACCTAGTTTGGGATTATGACATCATATGGGGAAAGGA
* * *
26891867 AGTTTATATAGTGTACGGCCTAGTCGTATTGCTATGGCATCAT
66 AGTTCATATAGTGTAAGACCTAGTCGTATTGCTATGGCATCAT
* *
26891910 ATGGCAAGTGAAGACCATATCGTGTAAGACCTAGTTTGGGACTATGACATCATATGGGGAAATGA
1 ATGGCAAGTGAAGACCATATCGTGTAAGACCTAGTTTGGGATTATGACATCATATGGGGAAAGGA
26891975 AG
66 AG
26891977 ATGACATTTG
Statistics
Matches: 161, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 161 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.28
Consensus pattern (108 bp):
ATGGCAAGTGAAGACCATATCGTGTAAGACCTAGTTTGGGATTATGACATCATATGGGGAAAGGA
AGTTCATATAGTGTAAGACCTAGTCGTATTGCTATGGCATCAT
Found at i:26891976 original size:54 final size:54
Alignment explanation
Indices: 26891702--26891977 Score: 242
Period size: 54 Copynumber: 5.1 Consensus size: 54
26891692 TCATGGCAAG
*
26891702 TGAAGACCATATCATGTAAGACCTAGTTTGGGATTATGGCATCATATGGGGAAA
1 TGAAGACCATATCGTGTAAGACCTAGTTTGGGATTATGGCATCATATGGGGAAA
* ** * *
26891756 GGAAGTTCATATAGTGTAAGACCTAGTCGTAT-TG-TTATGGCATCATAT--GGAAA
1 TGAAGACCATATCGTGTAAGACCTAGT--T-TGGGATTATGGCATCATATGGGGAAA
* * *
26891809 GTGAAGACCATAACGTGTAAGACCTAGTTTGGGATTATGACATCATATGGAGAAA
1 -TGAAGACCATATCGTGTAAGACCTAGTTTGGGATTATGGCATCATATGGGGAAA
* *** * * * * * * *
26891864 GGAAGTTTATATAGTGTACGGCCTAGTCGTAT-TG-CTATGGCATCATAT-GGCAAG
1 TGAAGACCATATCGTGTAAGACCTAGT--T-TGGGATTATGGCATCATATGGGGAAA
* *
26891918 TGAAGACCATATCGTGTAAGACCTAGTTTGGGACTATGACATCATATGGGGAAA
1 TGAAGACCATATCGTGTAAGACCTAGTTTGGGATTATGGCATCATATGGGGAAA
26891972 TGAAGA
1 TGAAGA
26891978 TGACATTTGA
Statistics
Matches: 169, Mismatches: 39, Indels: 28
0.72 0.17 0.12
Matches are distributed among these distances:
51 2 0.01
52 4 0.02
53 31 0.18
54 96 0.57
55 30 0.18
56 4 0.02
57 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (54 bp):
TGAAGACCATATCGTGTAAGACCTAGTTTGGGATTATGGCATCATATGGGGAAA
Found at i:26892196 original size:58 final size:58
Alignment explanation
Indices: 26892105--26892235 Score: 154
Period size: 58 Copynumber: 2.3 Consensus size: 58
26892095 TTTACCGATA
* * * * * * * *
26892105 TGTGGAAGCCTTTGTGGATGTTTTGTTCTGTGGAAGTCTTTGTGGTTGTTCTATTACG
1 TGTGGGAGCTTTTGTGGATGATTTGATATGTGGAAGCCTTTGTGGCTGTCCTATTACG
* *
26892163 TGTGGGAGCTTTTGTGGCTGATTTGATATGTGGAAGCCTTTGTGGCTGTCCTATTATG
1 TGTGGGAGCTTTTGTGGATGATTTGATATGTGGAAGCCTTTGTGGCTGTCCTATTACG
* *
26892221 TGTGTGAGCTCTTGT
1 TGTGGGAGCTTTTGT
26892236 AGTCGTTCTG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.12, C:0.11, G:0.32, T:0.44
Consensus pattern (58 bp):
TGTGGGAGCTTTTGTGGATGATTTGATATGTGGAAGCCTTTGTGGCTGTCCTATTACG
Found at i:26892220 original size:28 final size:28
Alignment explanation
Indices: 26892103--26892222 Score: 109
Period size: 28 Copynumber: 4.2 Consensus size: 28
26892093 AATTTACCGA
* * *
26892103 TATGTGGAAGCCTTTGTGGATGTTTTGT
1 TATGTGGAAGCCTTTGTGGCTGTTCTAT
* * *
26892131 TCTGTGGAAGTCTTTGTGGTTGTTCTAT
1 TATGTGGAAGCCTTTGTGGCTGTTCTAT
* *
26892159 TACGTGTGGGAGCTTTTGTGGCTGATT-TGA-
1 TA--TGTGGAAGCCTTTGTGGCTG-TTCT-AT
*
26892189 TATGTGGAAGCCTTTGTGGCTGTCCTAT
1 TATGTGGAAGCCTTTGTGGCTGTTCTAT
26892217 TATGTG
1 TATGTG
26892223 TGTGAGCTCT
Statistics
Matches: 73, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
27 2 0.03
28 49 0.67
30 19 0.26
31 3 0.04
ACGTcount: A:0.13, C:0.11, G:0.32, T:0.44
Consensus pattern (28 bp):
TATGTGGAAGCCTTTGTGGCTGTTCTAT
Found at i:26903197 original size:188 final size:188
Alignment explanation
Indices: 26902880--26903258 Score: 749
Period size: 188 Copynumber: 2.0 Consensus size: 188
26902870 CAATATGCAA
26902880 TTTTGTCTATTAGGGAAAGGATTGGTTATTCTAATGTTGTATGTTTGTAACAATTGAATGAGCTG
1 TTTTGTCTATTAGGGAAAGGATTGGTTATTCTAATGTTGTATGTTTGTAACAATTGAATGAGCTG
26902945 GGTTTATGTGTTGCTTTTTAGGTGTTAGGATTTGGTTTAAGGTGTTATTGTTTTAATAAGTGGAT
66 GGTTTATGTGTTGCTTTTTAGGTGTTAGGATTTGGTTTAAGGTGTTATTGTTTTAATAAGTGGAT
26903010 TATGGTTTTAGTACCTGCTGCAGTTGCAACAATGTTTTGTTCTGGTTTAGGTTGGTGG
131 TATGGTTTTAGTACCTGCTGCAGTTGCAACAATGTTTTGTTCTGGTTTAGGTTGGTGG
26903068 TTTTGTCTATTAGGGAAAGGATTGGTTATTCTAATGTTGTATGTTTGTAACAATTGAATGAGCTG
1 TTTTGTCTATTAGGGAAAGGATTGGTTATTCTAATGTTGTATGTTTGTAACAATTGAATGAGCTG
*
26903133 GGTTTGTGTGTTGCTTTTTAGGTGTTAGGATTTGGTTTAAGGTGTTATTGTTTTAATAAGTGGAT
66 GGTTTATGTGTTGCTTTTTAGGTGTTAGGATTTGGTTTAAGGTGTTATTGTTTTAATAAGTGGAT
26903198 TATGGTTTTAGTACCTGCTGCAGTTGCAACAATGTTTTGTTCTGGTTTAGGTTGGTGG
131 TATGGTTTTAGTACCTGCTGCAGTTGCAACAATGTTTTGTTCTGGTTTAGGTTGGTGG
26903256 TTT
1 TTT
26903259 CAATACCTTT
Statistics
Matches: 190, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 190 1.00
ACGTcount: A:0.20, C:0.06, G:0.28, T:0.46
Consensus pattern (188 bp):
TTTTGTCTATTAGGGAAAGGATTGGTTATTCTAATGTTGTATGTTTGTAACAATTGAATGAGCTG
GGTTTATGTGTTGCTTTTTAGGTGTTAGGATTTGGTTTAAGGTGTTATTGTTTTAATAAGTGGAT
TATGGTTTTAGTACCTGCTGCAGTTGCAACAATGTTTTGTTCTGGTTTAGGTTGGTGG
Found at i:26906068 original size:511 final size:511
Alignment explanation
Indices: 26904763--26906292 Score: 2406
Period size: 515 Copynumber: 3.0 Consensus size: 511
26904753 AAGCCTACTC
* * * *
26904763 GTTTAGTGGTAAGGCTTTAACTTACCCTTTGGTTTTTAATTCGAATTATCCCTACAGTTGCAAAA
1 GTTTAGTGGTAAGGCTTCAACTTACCCTTTGGTTTTTAGTTCGAATCATCCCTACAGTTACAAAA
*
26904828 TGGAAAATATTGTTTTTGTTCCCACGCTTGTGCCATCCATGTGTTGGAAATTGAGTCTAATTCAA
66 TGGAAAATATTGTTTTTGTTCCCACTCTTGTGCCATCCATGTGTTGGAAATTGAGTCTAATTCAA
26904893 ATTCTGGATAAGTTACTAGGAGTGGATTTATTTGGGTTTCGGTTTGTAAATATCCTTTAAAAATC
131 ATTCTGGATAAGTTACTAGGAGTGGATTTATTTGGGTTTCGGTTTGTAAATATCCTTTAAAAATC
* *
26904958 TCCTATGTTTCCTTCTTTCTCTCT-CTATTTCCTATTAATCGTTTTTACTTTTCTTTCTTTTTCC
196 TCTTATGTTTCCTTCTTTCTCTCTCCT-TTTCCTATCAATCGTTTTTACTTTTCTTTCTTTTTCC
* * *
26905022 TTTCCGCCATTTTTTCTTCTCTTCTTTTCCTTCTCCAAAAATTTCCCTTAGTTATACGAAAGTTT
260 TTTCTGCCATTTTTTCTTCTCTTCTTTTCCTTCTCCAAAAATTTCCCTTGGTTACA-GAAA-TTT
* * **
26905087 TCTTTTTCCCATAGTGACTTTATCGTTTCATCTATTTTTATTCTTTCCT-AGTTGTGGCTTTGTG
323 TCTTTTTCCCATAGTGAC-CTGTCGTTTCATCTATTTTCGTTCTTTCCTCA-TTGTGGCTTTGTG
*
26905151 ACGAGTTCGATAAGTTGTTGTGAAGGTTGTTTTTTCTGTAATGGGGAAATTTTGTTAAGATAAGC
386 AAGAGTTCGATAAGTTGTTGTGAAGGTTGTTTTTTCTGTAATGGGGAAATTTTGTTAAGATAAGC
* * * *
26905216 GAAGGTTCTTGTTAAATTCTGTTGCGATTAGCATCGAAATTGTTCGTTCTTATTAAATTCTT
451 GAA-GTTCTTGTTAAATTCTATTGTGATTAGCATCGGAATTGTTCGTTCTTGTTAAATTCTT
* * *
26905278 GTTTAGCGATAAGGCTTCAACTTACCCTTTGGTTTTTAGTTCGAATCATCCCTATAGTTACAAAA
1 GTTTAGTGGTAAGGCTTCAACTTACCCTTTGGTTTTTAGTTCGAATCATCCCTACAGTTACAAAA
*
26905343 TGGAAAATATTGTTTTTGTTCCCACTCTTGTGCCATCCATGTGTTGGAAATTAAGTCTAATTCAA
66 TGGAAAATATTGTTTTTGTTCCCACTCTTGTGCCATCCATGTGTTGGAAATTGAGTCTAATTCAA
* * *
26905408 ATTCTAGATAAGTTACTAGGAGTGGATTTGTTTGGGTTTCGGTTTGTAAATATCCTTTAAAATTC
131 ATTCTGGATAAGTTACTAGGAGTGGATTTATTTGGGTTTCGGTTTGTAAATATCCTTTAAAAATC
*
26905473 TCTTATGTTTCCTTCTTTCTCTCTCTTTTTCCTATCAATCGTTTTTACTTTTCTTTCTTTTTCCT
196 TCTTATGTTTCCTTCTTTCTCTCTCCTTTTCCTATCAATCGTTTTTACTTTTCTTTCTTTTTCCT
* *
26905538 TTCTGCCGTTTTGTCTTCTCTTCTTTTCCTTCTCCAAAAATTTCCCTTGGTTACATGAAATTTTC
261 TTCTGCCATTTTTTCTTCTCTTCTTTTCCTTCTCCAAAAATTTCCCTTGGTTACA-GAAATTTTC
*
26905603 TTTTTCCCATAGTGACCCTGTCGTTTCATCTATTTTCGTTCTTTCCTCATTGTGGCTTTGTGATG
325 TTTTTCCCATAGTGA-CCTGTCGTTTCATCTATTTTCGTTCTTTCCTCATTGTGGCTTTGTGAAG
* * *
26905668 AGTTC-AGTAAGTTGTTGTGAAGGTTATTTTTTCTATAATGAGGAAATTTTGTTAAGATAAGCGA
389 AGTTCGA-TAAGTTGTTGTGAAGGTTGTTTTTTCTGTAATGGGGAAATTTTGTTAAGATAAGCGA
*
26905732 AGTTCTTGTTAAATTCTATTGTGATTAACATCGGAATTGTTCGTTCTTGTTAAATTCTT
453 AGTTCTTGTTAAATTCTATTGTGATTAGCATCGGAATTGTTCGTTCTTGTTAAATTCTT
* * * *
26905791 GTTTAGTGGTAAGACTTCAGCTTATCCTTTGGTTTTTAGTTCGAATCATTCCTACAGTTACAAAA
1 GTTTAGTGGTAAGGCTTCAACTTACCCTTTGGTTTTTAGTTCGAATCATCCCTACAGTTACAAAA
26905856 TGGAAAATATTGTTTTTGTTCCCACTCTTGTGCCATCCATGTGTTGG-AA-TGAGTCTAATTCAA
66 TGGAAAATATTGTTTTTGTTCCCACTCTTGTGCCATCCATGTGTTGGAAATTGAGTCTAATTCAA
* * * * * *
26905919 GTTCTGGATAAGTTACTGGGAGTGGATTTATTTGGGTTTTGATTTGTAAATATCCCTAAAAAATC
131 ATTCTGGATAAGTTACTAGGAGTGGATTTATTTGGGTTTCGGTTTGTAAATATCCTTTAAAAATC
* * *
26905984 TCTTATGTTTCCTTCTTTCTTTCTCCTTTTCCTATCAGTCGTTTTTACTTTTCTTTCTTTTTTCT
196 TCTTATGTTTCCTTCTTTCTCTCTCCTTTTCCTATCAATCGTTTTTACTTTTCTTTCTTTTTCCT
*
26906049 TTCTGCCATTTTTTCTTCTCTTCTTTTCCTTCTCCAAAAATTTCCCTTGGTTACGAGAAAGTTTC
261 TTCTGCCATTTTTTCTTCTCTTCTTTTCCTTCTCCAAAAATTTCCCTTGGTTAC-AGAAATTTTC
* * *
26906114 TTTTTCCCATAGTGA-CTGTCATTTCATCTATTTTCGTTCTTTCCTCGTTGTGGCTTTGCGAAGA
325 TTTTTCCCATAGTGACCTGTCGTTTCATCTATTTTCGTTCTTTCCTCATTGTGGCTTTGTGAAGA
* * * * *
26906178 GTTCGATAAGTTGTTGTGACGGTTGTTTTTTCTGCAATGGGGAATTTTTTTTGAGATAAGCGAAG
390 GTTCGATAAGTTGTTGTGAAGGTTGTTTTTTCTGTAATGGGGAAATTTTGTTAAGATAAGCGAAG
*
26906243 ATTCTTGTTAAATTCTATTATGATTAGCATCGGAATTGTTCGTTCTTGTT
455 -TTCTTGTTAAATTCTATTGTGATTAGCATCGGAATTGTTCGTTCTTGTT
26906293 CTATTAGGAC
Statistics
Matches: 936, Mismatches: 72, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
509 100 0.11
510 48 0.05
511 205 0.22
512 3 0.00
513 159 0.17
514 121 0.13
515 299 0.32
516 1 0.00
ACGTcount: A:0.21, C:0.17, G:0.16, T:0.46
Consensus pattern (511 bp):
GTTTAGTGGTAAGGCTTCAACTTACCCTTTGGTTTTTAGTTCGAATCATCCCTACAGTTACAAAA
TGGAAAATATTGTTTTTGTTCCCACTCTTGTGCCATCCATGTGTTGGAAATTGAGTCTAATTCAA
ATTCTGGATAAGTTACTAGGAGTGGATTTATTTGGGTTTCGGTTTGTAAATATCCTTTAAAAATC
TCTTATGTTTCCTTCTTTCTCTCTCCTTTTCCTATCAATCGTTTTTACTTTTCTTTCTTTTTCCT
TTCTGCCATTTTTTCTTCTCTTCTTTTCCTTCTCCAAAAATTTCCCTTGGTTACAGAAATTTTCT
TTTTCCCATAGTGACCTGTCGTTTCATCTATTTTCGTTCTTTCCTCATTGTGGCTTTGTGAAGAG
TTCGATAAGTTGTTGTGAAGGTTGTTTTTTCTGTAATGGGGAAATTTTGTTAAGATAAGCGAAGT
TCTTGTTAAATTCTATTGTGATTAGCATCGGAATTGTTCGTTCTTGTTAAATTCTT
Found at i:26912406 original size:39 final size:39
Alignment explanation
Indices: 26912355--26912526 Score: 148
Period size: 39 Copynumber: 4.4 Consensus size: 39
26912345 TAAACTGGTA
* * *
26912355 GTGACATTGTAAACACTGCAATACAACACTGAACTGATG
1 GTGACACTGTAAACACTGCAATACAATACTGAACTGACG
* * ** * *
26912394 GTGACACAGTAAACAAC-GTAATACCTTACTGAACTGGCA
1 GTGACACTGTAAAC-ACTGCAATACAATACTGAACTGACG
* * *
26912433 ATGACACTGTAAACACTACAATATAATACTGAACTGACG
1 GTGACACTGTAAACACTGCAATACAATACTGAACTGACG
* * *** * *
26912472 GTGACACTGTAAACACCGTAATACTGCATTGAACTAACG
1 GTGACACTGTAAACACTGCAATACAATACTGAACTGACG
*
26912511 GTGACACTATAAACAC
1 GTGACACTGTAAACAC
26912527 CATAATACTG
Statistics
Matches: 102, Mismatches: 29, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
38 2 0.02
39 98 0.96
40 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (39 bp):
GTGACACTGTAAACACTGCAATACAATACTGAACTGACG
Found at i:26912475 original size:78 final size:78
Alignment explanation
Indices: 26912341--26912495 Score: 220
Period size: 78 Copynumber: 2.0 Consensus size: 78
26912331 AGTTAGCAAA
* * * * *
26912341 TTACTAAACTGGTAGTGACATTGTAAACACTGCAATACAACACTGAACTGATGGTGACACAGTAA
1 TTACTAAACTGGCAATGACACTGTAAACACTACAATACAACACTGAACTGACGGTGACACAGTAA
26912406 ACAACGTAATACC
66 ACAACGTAATACC
* * * *
26912419 TTACTGAACTGGCAATGACACTGTAAACACTACAATATAATACTGAACTGACGGTGACACTGTAA
1 TTACTAAACTGGCAATGACACTGTAAACACTACAATACAACACTGAACTGACGGTGACACAGTAA
*
26912484 ACACCGTAATAC
66 ACAACGTAATAC
26912496 TGCATTGAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 67 1.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.23
Consensus pattern (78 bp):
TTACTAAACTGGCAATGACACTGTAAACACTACAATACAACACTGAACTGACGGTGACACAGTAA
ACAACGTAATACC
Found at i:26912516 original size:78 final size:78
Alignment explanation
Indices: 26912354--26912526 Score: 204
Period size: 78 Copynumber: 2.2 Consensus size: 78
26912344 CTAAACTGGT
* * *
26912354 AGTGACATTGTAAACACTGCAATACAACACTGAACTGATGGTGACACAGTAAACAACGTAATACC
1 AGTGACACTGTAAACACTACAATACAACACTGAACTGACGGTGACACAGTAAACAACGTAATACC
* **
26912419 TTACTGAACTGGC
66 TCACTGAACTAAC
* * * * *
26912432 AATGACACTGTAAACACTACAATATAATACTGAACTGACGGTGACACTGTAAACACCGTAATA-C
1 AGTGACACTGTAAACACTACAATACAACACTGAACTGACGGTGACACAGTAAACAACGTAATACC
*
26912496 TGCATTGAACTAAC
66 T-CACTGAACTAAC
* *
26912510 GGTGACACTATAAACAC
1 AGTGACACTGTAAACAC
26912527 CATAATACTG
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
77 2 0.03
78 77 0.97
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (78 bp):
AGTGACACTGTAAACACTACAATACAACACTGAACTGACGGTGACACAGTAAACAACGTAATACC
TCACTGAACTAAC
Found at i:26912527 original size:39 final size:39
Alignment explanation
Indices: 26912462--26912536 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
26912452 AATATAATAC
* * *
26912462 TGAACTGACGGTGACACTGTAAACACCGTAATACTGCAT
1 TGAACTAACGGTGACACTATAAACACCATAATACTGCAT
26912501 TGAACTAACGGTGACACTATAAACACCATAATACTG
1 TGAACTAACGGTGACACTATAAACACCATAATACTG
26912537 TACTAAACTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (39 bp):
TGAACTAACGGTGACACTATAAACACCATAATACTGCAT
Found at i:26915328 original size:51 final size:51
Alignment explanation
Indices: 26915082--26915329 Score: 300
Period size: 51 Copynumber: 4.8 Consensus size: 51
26915072 TTTCATTTCA
* ** * * *
26915082 TACTCACGATGACA-TATAGTCATCAGACCTCTTGTTCCATATAGGAATTCATA
1 TACTCACGATGACACT-TAGTCATCGGACCT-TTAATCCGTAAAGG-ATTCATT
** * * * * *
26915135 TACTCACGATGACACAAAGTCATTGGACCCTTAATCCATCATGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
*
26915186 TACTCACGATGACACTTAGTCATCAGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
* *
26915237 TACTCAAGATGAAACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
* *
26915288 TACTCACGATGACACTTAGTTATCGGACCTTTAATTCGTAAA
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAA
26915330 ACGATGACAC
Statistics
Matches: 168, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
51 135 0.80
52 9 0.05
53 24 0.14
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
Found at i:26922291 original size:51 final size:51
Alignment explanation
Indices: 26922166--26922403 Score: 257
Period size: 51 Copynumber: 4.6 Consensus size: 51
26922156 TTTCATTTCA
** *
26922166 TACTCACGATGACA-TATAGTCATCGGACCTCTTGTTCCAT-ATAGGAATTCATA
1 TACTCACGATGACACT-TAGTCATCGGACCT-TTAATCCATCAT-GG-ATTCATT
**
26922219 TACTCACGATGACACAAAGTCATCGGACCTTTAATCCATCATGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATCATGGATTCATT
* * *
26922270 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATCATGGATTCATT
* * * * *
26922321 TACTCACAATGACATTTAGTCATCGAACCTTTAATTCGTACA-GGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCAT-CATGGATTCATT
* * * *
26922372 TCCTCATGATGACACTTAATCGTCGGACCTTT
1 TACTCACGATGACACTTAGTCATCGGACCTTT
26922404 TCGTTTATAT
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
51 121 0.76
52 10 0.06
53 29 0.18
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATCATGGATTCATT
Found at i:26922342 original size:102 final size:103
Alignment explanation
Indices: 26922166--26922403 Score: 284
Period size: 102 Copynumber: 2.3 Consensus size: 103
26922156 TTTCATTTCA
** * *
26922166 TACTCACGATGACA-TATAGTCATCGGACCTCTTGTTCCATATAGGAATTCATATACTCACGATG
1 TACTCACGATGACACT-TAGTCATCGGACCT-TTAATCCATAAAGGAATTCATATACTCACAATG
*
26922230 ACACAAAGTCATCGGACCTTTAATCCAT-CATGGATTCATT
64 ACACAAAGTCATCGAACCTTTAATCCATACA-GGATTCATT
* *
26922270 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGG-ATTCATTTACTCACAATGAC
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGAATTCATATACTCACAATGAC
*** * *
26922334 ATTTAGTCATCGAACCTTTAATTCGTACAGGATTCATT
66 ACAAAGTCATCGAACCTTTAATCCATACAGGATTCATT
* * * *
26922372 TCCTCATGATGACACTTAATCGTCGGACCTTT
1 TACTCACGATGACACTTAGTCATCGGACCTTT
26922404 TCGTTTATAT
Statistics
Matches: 116, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
102 75 0.65
103 12 0.10
104 28 0.24
105 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (103 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGAATTCATATACTCACAATGAC
ACAAAGTCATCGAACCTTTAATCCATACAGGATTCATT
Found at i:26923581 original size:33 final size:33
Alignment explanation
Indices: 26923538--26923604 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
26923528 CGAAATCACT
*
26923538 GTTTTTGTTGTGAGTTCTGATAGCATCTTAGAG
1 GTTTTAGTTGTGAGTTCTGATAGCATCTTAGAG
26923571 GTTTTAGTTGTGAGTTCTGATAGCATCTTAGAG
1 GTTTTAGTTGTGAGTTCTGATAGCATCTTAGAG
26923604 G
1 G
26923605 GAGCGAGTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.19, C:0.09, G:0.28, T:0.43
Consensus pattern (33 bp):
GTTTTAGTTGTGAGTTCTGATAGCATCTTAGAG
Found at i:26931883 original size:142 final size:141
Alignment explanation
Indices: 26931627--26932043 Score: 735
Period size: 142 Copynumber: 2.9 Consensus size: 141
26931617 GACGAATGAT
*
26931627 GTTGTCAGCGTATACATTGAATAGGTATGGTTCGTTCTAATGGTATTTTGCAGCATTGCGTATGA
1 GTTGTCAGCGTATACATTGAATAGGTATGGTTCGTTCCAATGGTATTTTGCAGCATTGCGTATGA
*
26931692 ACCTAATCTTCTTGTGACTAGTATAACTTATGGGTAGCTTTCCACACACAAGGTAATTGACAACA
66 ACCTAATCTTCTTGTGACTAGTATAACTCATGGGTAGC-TTCCACACACAAGGTAATTGACAACA
*
26931757 TCGGTGTACCAG
130 TCGGCGTACCAG
* *
26931769 GTTGTCAGCGCATACATTGAATAGGTATGGTTCGTTCCAATGGTATTTTGTAGCATTGCGTATGA
1 GTTGTCAGCGTATACATTGAATAGGTATGGTTCGTTCCAATGGTATTTTGCAGCATTGCGTATGA
26931834 ACCTAATCTTCTTGTGACTAGTATAACTCATGGGTAGCTTCCCACACACAAGGTAATTGACAACA
66 ACCTAATCTTCTTGTGACTAGTATAACTCATGGGTAGCTT-CCACACACAAGGTAATTGACAACA
26931899 TCGGCGTACCAG
130 TCGGCGTACCAG
*
26931911 GTTGTCAGCGTATACATTGAATAGGTATGGTTTGTTCCAATGGTATTTTGCAGCATTGCGTATGA
1 GTTGTCAGCGTATACATTGAATAGGTATGGTTCGTTCCAATGGTATTTTGCAGCATTGCGTATGA
* *
26931976 ACCTAATCTTCTTGTGACCAGCATAACTCATGGGTAGCCTTCCACACACAAGGTAATTGACAACA
66 ACCTAATCTTCTTGTGACTAGTATAACTCATGGGTAG-CTTCCACACACAAGGTAATTGACAACA
26932041 TCG
130 TCG
26932044 TCATACTAGG
Statistics
Matches: 263, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 2 0.01
142 258 0.98
143 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (141 bp):
GTTGTCAGCGTATACATTGAATAGGTATGGTTCGTTCCAATGGTATTTTGCAGCATTGCGTATGA
ACCTAATCTTCTTGTGACTAGTATAACTCATGGGTAGCTTCCACACACAAGGTAATTGACAACAT
CGGCGTACCAG
Found at i:26936705 original size:13 final size:14
Alignment explanation
Indices: 26936687--26936716 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26936677 GTCAATGCAA
26936687 TCAGA-GTTAAATG
1 TCAGAGGTTAAATG
26936700 TCAGAGGTTAAATG
1 TCAGAGGTTAAATG
26936714 TCA
1 TCA
26936717 ATGTACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (14 bp):
TCAGAGGTTAAATG
Found at i:26942958 original size:13 final size:14
Alignment explanation
Indices: 26942940--26942969 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26942930 GTTAATGCAA
26942940 TCAGA-GTTAAATG
1 TCAGAGGTTAAATG
26942953 TCAGAGGTTAAATG
1 TCAGAGGTTAAATG
26942967 TCA
1 TCA
26942970 ATGTACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (14 bp):
TCAGAGGTTAAATG
Found at i:26943004 original size:7 final size:7
Alignment explanation
Indices: 26942996--26943026 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
26942986 TCAAATGTGT
*
26942996 TGAGTGT
1 TGAGTGC
26943003 TGAGTGC
1 TGAGTGC
26943010 TGAGTGC
1 TGAGTGC
26943017 TGAGTGC
1 TGAGTGC
26943024 TGA
1 TGA
26943027 ATATTTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.16, C:0.10, G:0.42, T:0.32
Consensus pattern (7 bp):
TGAGTGC
Found at i:26944514 original size:73 final size:71
Alignment explanation
Indices: 26944280--26944515 Score: 192
Period size: 73 Copynumber: 3.3 Consensus size: 71
26944270 CGCCCACGAA
*** * * *
26944280 CGTGTGTCAGACCGTGTGCCCCTACTGTTT-TGAAAGTACATAAACAATGAGTTACACAGCCTAG
1 CGTGTGTCAGACCGTGTGCATATCCTGTTTGTGCAA--ACATAAACAGTGAGTTACACAGCCT-G
26944344 ACACACGGG
63 ACACACGGG
* * * * * * * *
26944353 CGTGTGTCAGACCGTGTGGATATGCTGTTTGTGGAATCAAAAACAGAGAGTTACACGGGCTGAGC
1 CGTGTGTCAGACCGTGTGCATATCCTGTTTGTGCAAACATAAACAGTGAGTTACACAGCCTGA-C
26944418 ACACGGG
65 ACACGGG
* * * *
26944425 TGTGTG-CTAAATCGTGTGTCCATA-CCAT-TTTGTGCAAACATAAATAGTGAGTTACACAGCCT
1 CGTGTGTC-AGACCGTGTG--CATATCC-TGTTTGTGCAAACATAAACAGTGAGTTACACAGCCT
*
26944487 GTACACATGGG
62 G-ACACACGGG
26944498 CGTGTGTCAGACCGTGTG
1 CGTGTGTCAGACCGTGTG
26944516 ACACACATGA
Statistics
Matches: 127, Mismatches: 28, Indels: 16
0.74 0.16 0.09
Matches are distributed among these distances:
71 3 0.02
72 40 0.31
73 74 0.58
74 10 0.08
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (71 bp):
CGTGTGTCAGACCGTGTGCATATCCTGTTTGTGCAAACATAAACAGTGAGTTACACAGCCTGACA
CACGGG
Found at i:26944739 original size:78 final size:78
Alignment explanation
Indices: 26944605--26944789 Score: 255
Period size: 78 Copynumber: 2.4 Consensus size: 78
26944595 GTTATCAAAT
* * * * *
26944605 TACTGAACTGGTAGTGGCACTGTAAACATTGCAATACAACACTGAACTGATGGTGACATTATAAA
1 TACTGAACTGGCAGTGACACTGTAAACACTGCAATACAACACTAAACTGATGGTGACACTATAAA
26944670 C-CCTGTAATACCA
66 CACC-GTAATACCA
*
26944683 TACTAAACTGGCAGTGACACTGTAAACACTGCAATACAACACTAAACTGATGGTGACACTATAAA
1 TACTGAACTGGCAGTGACACTGTAAACACTGCAATACAACACTAAACTGATGGTGACACTATAAA
***
26944748 CACCGTAATATTG
66 CACCGTAATACCA
* *
26944761 TACTGAACTGACGGTGACACTGTAAACAC
1 TACTGAACTGGCAGTGACACTGTAAACAC
26944790 CGTAATACTG
Statistics
Matches: 94, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
78 92 0.98
79 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (78 bp):
TACTGAACTGGCAGTGACACTGTAAACACTGCAATACAACACTAAACTGATGGTGACACTATAAA
CACCGTAATACCA
Found at i:26944809 original size:78 final size:78
Alignment explanation
Indices: 26944617--26944820 Score: 230
Period size: 78 Copynumber: 2.6 Consensus size: 78
26944607 CTGAACTGGT
* ** *
26944617 AGTGGCACTGTAAACATTGCAATACAACACTGAACTGATGGTGACATTATAAACCCTGTAATACC
1 AGTGACACTGTAAACACCGCAATACAACACTGAACTGATGGTGACACTATAAACCCTGTAATACC
*
26944682 ATACTAAACTGGC
66 ATACTAAACTGAC
* * *
26944695 AGTGACACTGTAAACACTGCAATACAACACTAAACTGATGGTGACACTATAAACACC-GTAATAT
1 AGTGACACTGTAAACACCGCAATACAACACTGAACTGATGGTGACACTATAAAC-CCTGTAATAC
** *
26944759 TGTACTGAACTGAC
65 CATACTAAACTGAC
* * *** * *
26944773 GGTGACACTGTAAACACCGTAATACTGTACTGAACTGGTAGTGACACT
1 AGTGACACTGTAAACACCGCAATACAACACTGAACTGATGGTGACACT
26944821 GCAAACACTG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 105 0.98
79 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.24
Consensus pattern (78 bp):
AGTGACACTGTAAACACCGCAATACAACACTGAACTGATGGTGACACTATAAACCCTGTAATACC
ATACTAAACTGAC
Found at i:26944821 original size:39 final size:39
Alignment explanation
Indices: 26944605--26944828 Score: 180
Period size: 39 Copynumber: 5.7 Consensus size: 39
26944595 GTTATCAAAT
* * ** *
26944605 TACTGAACTGGTAGTGGCACTGTAAACATTGCAATACAA
1 TACTGAACTGATAGTGACACTGTAAACACCGTAATACAA
* * * * *
26944644 CACTGAACTGATGGTGACATTATAAAC-CCTGTAATACCA
1 TACTGAACTGATAGTGACACTGTAAACACC-GTAATACAA
* ** * *
26944683 TACTAAACTGGCAGTGACACTGTAAACACTGCAATACAA
1 TACTGAACTGATAGTGACACTGTAAACACCGTAATACAA
* * * * ***
26944722 CACTAAACTGATGGTGACACTATAAACACCGTAATATTG
1 TACTGAACTGATAGTGACACTGTAAACACCGTAATACAA
** **
26944761 TACTGAACTGACGGTGACACTGTAAACACCGTAATACTG
1 TACTGAACTGATAGTGACACTGTAAACACCGTAATACAA
* *
26944800 TACTGAACTGGTAGTGACACTGCAAACAC
1 TACTGAACTGATAGTGACACTGTAAACAC
26944829 TGCAATGCTA
Statistics
Matches: 144, Mismatches: 39, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
39 143 0.99
40 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.24
Consensus pattern (39 bp):
TACTGAACTGATAGTGACACTGTAAACACCGTAATACAA
Found at i:26945646 original size:15 final size:15
Alignment explanation
Indices: 26945624--26945661 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
26945614 CTTTTTAAAT
*
26945624 AATTTTAATTTTTTA
1 AATTTTAATATTTTA
*
26945639 ATTTTTAATATTTTA
1 AATTTTAATATTTTA
26945654 AATTTTAA
1 AATTTTAA
26945662 ATAATTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
AATTTTAATATTTTA
Found at i:26945648 original size:24 final size:26
Alignment explanation
Indices: 26945605--26945659 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 26
26945595 TATTTTTATC
26945605 ATTTTTAGACTTTTTAAATAATTTTAA
1 ATTTTTAGACTTTTTAAAT-ATTTTAA
*
26945632 TTTTTTA-A-TTTTT-AATATTTTAA
1 ATTTTTAGACTTTTTAAATATTTTAA
26945655 ATTTT
1 ATTTT
26945660 AAATAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 5 0.19
26 1 0.04
27 6 0.23
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (26 bp):
ATTTTTAGACTTTTTAAATATTTTAA
Found at i:26949091 original size:23 final size:24
Alignment explanation
Indices: 26949065--26949126 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
26949055 ACTTAATCGG
26949065 ACATGTTTACGAACAT-TAAACAA
1 ACATGTTTACGAACATATAAACAA
* **
26949088 ACATGTTTATGAACATATAATTAA
1 ACATGTTTACGAACATATAAACAA
*
26949112 ACATGTTCACGAACA
1 ACATGTTTACGAACA
26949127 ATGTTAACGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
23 15 0.45
24 18 0.55
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (24 bp):
ACATGTTTACGAACATATAAACAA
Found at i:26952733 original size:31 final size:30
Alignment explanation
Indices: 26952670--26952729 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26952660 TAATTAAATT
* * **
26952670 TTTTTGAATAGTTTAGTGACTTAAATAAAA
1 TTTTTGAATAATTTAATGACAAAAATAAAA
26952700 TTTTTGAATAATTTAATGACAAAAATAAAA
1 TTTTTGAATAATTTAATGACAAAAATAAAA
26952730 ATTTAGTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (30 bp):
TTTTTGAATAATTTAATGACAAAAATAAAA
Found at i:26956487 original size:12 final size:12
Alignment explanation
Indices: 26956472--26956536 Score: 64
Period size: 12 Copynumber: 5.6 Consensus size: 12
26956462 GTTCAATTAT
26956472 ATGTTCGTGAAC
1 ATGTTCGTGAAC
**
26956484 ATGTTCGTTTA-
1 ATGTTCGTGAAC
*
26956495 TTGTTCGTGAAC
1 ATGTTCGTGAAC
*
26956507 ATGTTCGAT-TA-
1 ATGTTCG-TGAAC
26956518 ATGTTCGTGAAC
1 ATGTTCGTGAAC
26956530 ATGTTCG
1 ATGTTCG
26956537 ATTAAGTTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
10 1 0.02
11 16 0.39
12 23 0.56
13 1 0.02
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.42
Consensus pattern (12 bp):
ATGTTCGTGAAC
Found at i:26956541 original size:23 final size:23
Alignment explanation
Indices: 26956449--26956559 Score: 143
Period size: 23 Copynumber: 4.8 Consensus size: 23
26956439 TCATTAACAT
* *
26956449 TGTTCGTGAACGTGTTCAATTATA
1 TGTTCGTGAACATGTTCGATTA-A
* *
26956473 TGTTCGTGAACATGTTCGTTTAT
1 TGTTCGTGAACATGTTCGATTAA
26956496 TGTTCGTGAACATGTTCGATTAA
1 TGTTCGTGAACATGTTCGATTAA
26956519 TGTTCGTGAACATGTTCGATTAA
1 TGTTCGTGAACATGTTCGATTAA
**
26956542 -GTTAAATGAACATGTTCG
1 TGTT-CGTGAACATGTTCG
26956560 TGAACATTAA
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
22 3 0.04
23 56 0.72
24 19 0.24
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.41
Consensus pattern (23 bp):
TGTTCGTGAACATGTTCGATTAA
Found at i:26956569 original size:23 final size:23
Alignment explanation
Indices: 26956525--26956570 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26956515 TTAATGTTCG
* *
26956525 TGAACATGTTCGATTAAGTTAAA
1 TGAACATGTTCGATGAAATTAAA
26956548 TGAACATGTTCG-TGAACATTAAA
1 TGAACATGTTCGATGAA-ATTAAA
26956571 CAAGCGAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (23 bp):
TGAACATGTTCGATGAAATTAAA
Found at i:26962016 original size:23 final size:23
Alignment explanation
Indices: 26961996--26962332 Score: 297
Period size: 23 Copynumber: 14.7 Consensus size: 23
26961986 GTCCATTTGC
*
26961996 ACATAAATCACAATAATATTTAA
1 ACATAAATCACATTAATATTTAA
* *
26962019 ACATAAATGAAATTAATATTTAA
1 ACATAAATCACATTAATATTTAA
* *
26962042 GA-ATAAATCATATTAACATTTAA
1 -ACATAAATCACATTAATATTTAA
*
26962065 GC-TAAATCACATTAATATTTAA
1 ACATAAATCACATTAATATTTAA
*
26962087 ACACAAATCACATTAATATTTAA
1 ACATAAATCACATTAATATTTAA
* * *
26962110 GCACAAATCACGTTAACT-TTTAA
1 ACATAAATCACATTAA-TATTTAA
* * *
26962133 GCATAAATCATATTAACATTTAA
1 ACATAAATCACATTAATATTTAA
*
26962156 GCATAAATCACATTAATATTTAA
1 ACATAAATCACATTAATATTTAA
** * *
26962179 GTACAAATCATATTAATATTTAA
1 ACATAAATCACATTAATATTTAA
* *
26962202 GCAGAAATCACATTAATATTTAA
1 ACATAAATCACATTAATATTTAA
* *
26962225 GA-AGAAAGCACATTAATATTTAA
1 -ACATAAATCACATTAATATTTAA
** *
26962248 GTAGAAATCACATTAATATTTAA
1 ACATAAATCACATTAATATTTAA
** * *
26962271 GTAGAAATCACATTAATATTTAT
1 ACATAAATCACATTAATATTTAA
* * * *
26962294 GCACAAATCACATTAACT-GTTAT
1 ACATAAATCACATTAA-TATTTAA
*
26962317 GCATAAATCACATTAA
1 ACATAAATCACATTAA
26962333 CATCTAACAT
Statistics
Matches: 272, Mismatches: 34, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
22 19 0.07
23 250 0.92
24 3 0.01
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (23 bp):
ACATAAATCACATTAATATTTAA
Found at i:26962048 original size:46 final size:46
Alignment explanation
Indices: 26961998--26962332 Score: 372
Period size: 46 Copynumber: 7.3 Consensus size: 46
26961988 CCATTTGCAC
* * * *
26961998 ATAAATCACAATAATATTTAAACATAAATGAAATTAATATTTAAGA
1 ATAAATCACATTAATATTTAAGCATAAATCACATTAATATTTAAGA
* *
26962044 ATAAATCATATTAACATTTAAGC-TAAATCACATTAATATTTAA-A
1 ATAAATCACATTAATATTTAAGCATAAATCACATTAATATTTAAGA
* * * *
26962088 CACAAATCACATTAATATTTAAGCACAAATCACGTTAACT-TTTAAGC
1 -ATAAATCACATTAATATTTAAGCATAAATCACATTAA-TATTTAAGA
* * *
26962135 ATAAATCATATTAACATTTAAGCATAAATCACATTAATATTTAAGT
1 ATAAATCACATTAATATTTAAGCATAAATCACATTAATATTTAAGA
* * *
26962181 ACAAATCATATTAATATTTAAGCAGAAATCACATTAATATTTAAGA
1 ATAAATCACATTAATATTTAAGCATAAATCACATTAATATTTAAGA
* * * * *
26962227 AGAAAGCACATTAATATTTAAGTAGAAATCACATTAATATTTAAGT
1 ATAAATCACATTAATATTTAAGCATAAATCACATTAATATTTAAGA
* * * * * *
26962273 AGAAATCACATTAATATTTATGCACAAATCACATTAACT-GTTATGC
1 ATAAATCACATTAATATTTAAGCATAAATCACATTAA-TATTTAAGA
26962319 ATAAATCACATTAA
1 ATAAATCACATTAA
26962333 CATCTAACAT
Statistics
Matches: 248, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
44 1 0.00
45 39 0.16
46 206 0.83
47 2 0.01
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (46 bp):
ATAAATCACATTAATATTTAAGCATAAATCACATTAATATTTAAGA
Found at i:26962062 original size:69 final size:69
Alignment explanation
Indices: 26961997--26962343 Score: 378
Period size: 69 Copynumber: 5.1 Consensus size: 69
26961987 TCCATTTGCA
* * * * * *
26961997 CATAAATCACAATAATATTTAAACATAAATGAAATTAATATTTAAGAATAAATCATATTAACATT
1 CATAAATCACATTAATATTTAAACATAAATCACATTAATATTTAAGTACAAATCACATTAACATT
26962062 TAAG
66 TAAG
* * * *
26962066 C-TAAATCACATTAATATTTAAACACAAATCACATTAATATTTAAGCACAAATCACGTTAACTTT
1 CATAAATCACATTAATATTTAAACATAAATCACATTAATATTTAAGTACAAATCACATTAACATT
26962130 TAAG
66 TAAG
* * * * *
26962134 CATAAATCATATTAACATTTAAGCATAAATCACATTAATATTTAAGTACAAATCATATTAATATT
1 CATAAATCACATTAATATTTAAACATAAATCACATTAATATTTAAGTACAAATCACATTAACATT
26962199 TAAG
66 TAAG
* * * * *
26962203 CAGAAATCACATTAATATTTAAGA-AGAAAGCACATTAATATTTAAGTAGAAATCACATTAATAT
1 CATAAATCACATTAATATTTAA-ACATAAATCACATTAATATTTAAGTACAAATCACATTAACAT
26962267 TTAAG
65 TTAAG
* * ** * * * * *
26962272 TAGAAATCACATTAATATTTATGCACAAATCACATTAACT-GTTATGCATAAATCACATTAACAT
1 CATAAATCACATTAATATTTAAACATAAATCACATTAA-TATTTAAGTACAAATCACATTAACAT
*
26962336 CTAA-
65 TTAAG
26962340 CATA
1 CATA
26962344 TAACGCATTA
Statistics
Matches: 235, Mismatches: 39, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
68 61 0.26
69 173 0.74
70 1 0.00
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (69 bp):
CATAAATCACATTAATATTTAAACATAAATCACATTAATATTTAAGTACAAATCACATTAACATT
TAAG
Found at i:26962857 original size:36 final size:36
Alignment explanation
Indices: 26962769--26962939 Score: 238
Period size: 36 Copynumber: 4.8 Consensus size: 36
26962759 CTATCACATT
*
26962769 GCATGAATAACATACACCACATATTTAC--TCTCTTG
1 GCATGAATAACATAC-CCACATATTTACTGTCTCATG
*
26962804 GCATGAATAACACACCCACATATTTACTGTCTCATG
1 GCATGAATAACATACCCACATATTTACTGTCTCATG
* * *
26962840 GCATGAATAGCATACCCATATATTTACTGTCACATG
1 GCATGAATAACATACCCACATATTTACTGTCTCATG
* * *
26962876 ACATGAAAAACATACCCACATATTTACTGTCTAATG
1 GCATGAATAACATACCCACATATTTACTGTCTCATG
*
26962912 GCATGAATAACATAACCACATATTTACT
1 GCATGAATAACATACCCACATATTTACT
26962940 TTCACAACAG
Statistics
Matches: 119, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
34 12 0.10
35 14 0.12
36 93 0.78
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (36 bp):
GCATGAATAACATACCCACATATTTACTGTCTCATG
Found at i:26964805 original size:20 final size:20
Alignment explanation
Indices: 26964763--26964815 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
26964753 AACGGATGAG
** *
26964763 GATATGATATGATTCGTTAT
1 GATATGATATGACACATTAT
*
26964783 GATATGATATGACACATTTT
1 GATATGATATGACACATTAT
26964803 GATTTATGATATG
1 GA--TATGATATG
26964816 CTCTGATATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 18 0.67
22 9 0.33
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.43
Consensus pattern (20 bp):
GATATGATATGACACATTAT
Found at i:26972469 original size:25 final size:26
Alignment explanation
Indices: 26972443--26972495 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 26
26972433 TAAAAAGGTA
26972443 GTACTAAATTCTATATATTATTGTAGTG
1 GTACTAAATTCTATATATTATTGTA--G
*
26972471 GTACTAATTTCTATATATTATTGTA
1 GTACTAAATTCTATATATTATTGTA
26972496 CATATTTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.49
Consensus pattern (26 bp):
GTACTAAATTCTATATATTATTGTAG
Found at i:26976267 original size:14 final size:15
Alignment explanation
Indices: 26976250--26976282 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
26976240 TTGGAACAAG
26976250 ATTTATTTCA-TTTT
1 ATTTATTTCATTTTT
*
26976264 ATTTATTTTATTTTT
1 ATTTATTTCATTTTT
26976279 ATTT
1 ATTT
26976283 TGTTTTAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTATTTCATTTTT
Found at i:26977303 original size:17 final size:17
Alignment explanation
Indices: 26977281--26977318 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26977271 CTCATTTTCT
*
26977281 TTTTCTTTCTTTAT-TTG
1 TTTTCTTTATTT-TGTTG
26977298 TTTTCTTTATTTTGTTG
1 TTTTCTTTATTTTGTTG
26977315 TTTT
1 TTTT
26977319 TTCTTGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.05, C:0.08, G:0.08, T:0.79
Consensus pattern (17 bp):
TTTTCTTTATTTTGTTG
Found at i:26983667 original size:20 final size:21
Alignment explanation
Indices: 26983628--26983667 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26983618 TAAAGCCATA
*
26983628 AAACACTAAGTTAGAAAATGC
1 AAACACTAAGATAGAAAATGC
*
26983649 AAACACTAA-ATATAAAATG
1 AAACACTAAGATAGAAAATG
26983668 TTTAACATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.20
Consensus pattern (21 bp):
AAACACTAAGATAGAAAATGC
Found at i:26991480 original size:16 final size:17
Alignment explanation
Indices: 26991442--26991482 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
26991432 AGACTTGAAC
*
26991442 AATAACAAAAATAAAAT
1 AATAATAAAAATAAAAT
*
26991459 AA-AATAAAAAT-ACAT
1 AATAATAAAAATAAAAT
26991474 AATAATAAA
1 AATAATAAA
26991483 TTCAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 5 0.24
16 14 0.67
17 2 0.10
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (17 bp):
AATAATAAAAATAAAAT
Found at i:26995296 original size:17 final size:17
Alignment explanation
Indices: 26995250--26995289 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
26995240 CTGTAATATA
* *
26995250 ATTGTCCCTGCATTTTT
1 ATTGTCACTGCATTCTT
26995267 ATTGTCACTGCATTCTT
1 ATTGTCACTGCATTCTT
26995284 ATTGTC
1 ATTGTC
26995290 GTTGCATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.12, T:0.50
Consensus pattern (17 bp):
ATTGTCACTGCATTCTT
Found at i:27008709 original size:18 final size:18
Alignment explanation
Indices: 27008686--27008733 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
27008676 AACATGTGGT
27008686 TGCATCTGATTATAAGAC
1 TGCATCTGATTATAAGAC
** **
27008704 TGCATCTGGGTATGTGAC
1 TGCATCTGATTATAAGAC
27008722 TGCATCTGATTA
1 TGCATCTGATTA
27008734 GGCTGCACAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (18 bp):
TGCATCTGATTATAAGAC
Found at i:27016120 original size:23 final size:23
Alignment explanation
Indices: 27016094--27016161 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
27016084 CTTTAAGGAA
* *
27016094 AAATCACATTAATATTTAATCAT
1 AAATCATATTAATATTTAATCAC
*
27016117 AAATCATATTAATATTTAAGCAC
1 AAATCATATTAATATTTAATCAC
*
27016140 AAATCATATTAATATTTGATCA
1 AAATCATATTAATATTTAATCA
27016162 ACTGGTTTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (23 bp):
AAATCATATTAATATTTAATCAC
Found at i:27041884 original size:20 final size:21
Alignment explanation
Indices: 27041859--27041897 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27041849 TGCATTTTTA
*
27041859 GCATTTT-TAACTTAGTGACT
1 GCATTTTCTAACTCAGTGACT
27041879 GCATTTTCTAACTCAGTGA
1 GCATTTTCTAACTCAGTGA
27041898 TGTTCGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (21 bp):
GCATTTTCTAACTCAGTGACT
Found at i:27048708 original size:19 final size:20
Alignment explanation
Indices: 27048684--27048723 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
27048674 ACCCAGTCAC
27048684 ATTTGTGTTATTTAT-TTTT
1 ATTTGTGTTATTTATGTTTT
*
27048703 ATTTGTTTTATTTATGTTTT
1 ATTTGTGTTATTTATGTTTT
27048723 A
1 A
27048724 GTTCTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
ATTTGTGTTATTTATGTTTT
Found at i:27051186 original size:17 final size:20
Alignment explanation
Indices: 27051158--27051199 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
27051148 GTTGCAATTA
27051158 ATTTTACTTAATTT-TTATT
1 ATTTTACTTAATTTGTTATT
27051177 -TTTTAC-TAATTTGTTATT
1 ATTTTACTTAATTTGTTATT
27051195 ATTTT
1 ATTTT
27051200 CTTTTCTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
18 11 0.52
19 4 0.19
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (20 bp):
ATTTTACTTAATTTGTTATT
Found at i:27056684 original size:19 final size:19
Alignment explanation
Indices: 27056660--27056707 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
27056650 GAAATTTCGA
*
27056660 TCAAGGTGGTC-AAGTCCTT
1 TCAAGGTGGTCGAAG-CATT
*
27056679 TCAAGGTTGTCGAAGCATT
1 TCAAGGTGGTCGAAGCATT
*
27056698 TCAAAGTGGT
1 TCAAGGTGGT
27056708 GCAGTGATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 21 0.88
20 3 0.12
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (19 bp):
TCAAGGTGGTCGAAGCATT
Found at i:27058699 original size:15 final size:12
Alignment explanation
Indices: 27058662--27058700 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
27058652 AGAGAAGGAT
*
27058662 GAAGCAAAAGAA
1 GAAGGAAAAGAA
27058674 GAAGGAAAAGAA
1 GAAGGAAAAGAA
27058686 GAA-GAGAAAGAA
1 GAAGGA-AAAGAA
27058698 GAA
1 GAA
27058701 ACAAAGCCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 2 0.08
12 23 0.92
ACGTcount: A:0.67, C:0.03, G:0.31, T:0.00
Consensus pattern (12 bp):
GAAGGAAAAGAA
Found at i:27082911 original size:16 final size:16
Alignment explanation
Indices: 27082890--27082920 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27082880 ATAATGTGAA
27082890 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
27082906 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
27082921 GGATCCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:27083754 original size:26 final size:26
Alignment explanation
Indices: 27083712--27083765 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
27083702 ATTTTTGGTG
27083712 CAATTCTAGACACGTTCATGCAGCGA
1 CAATTCTAGACACGTTCATGCAGCGA
*
27083738 CAATTCT-GTACATGTTCATGCAGCGA
1 CAATTCTAG-ACACGTTCATGCAGCGA
27083764 CA
1 CA
27083766 TTCCTGGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CAATTCTAGACACGTTCATGCAGCGA
Found at i:27084508 original size:12 final size:14
Alignment explanation
Indices: 27084480--27084522 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 14
27084470 TACACATATA
27084480 TTTT-TTTTTCTTC
1 TTTTCTTTTTCTTC
27084493 TTTTCTTTTTC-T-
1 TTTTCTTTTTCTTC
*
27084505 TTTTCTTTTTTTTC
1 TTTTCTTTTTCTTC
27084519 TTTT
1 TTTT
27084523 ATGTGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 10 0.38
13 6 0.23
14 10 0.38
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTCTTTTTCTTC
Found at i:27084509 original size:20 final size:20
Alignment explanation
Indices: 27084480--27084522 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
27084470 TACACATATA
27084480 TTTTTTTTTC-TTCTTTTCT
1 TTTTTTTTTCTTTCTTTTCT
*
27084499 TTTTCTTTTTCTTTTTTTTCT
1 TTTT-TTTTTCTTTCTTTTCT
27084520 TTT
1 TTT
27084523 ATGTGACTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 6 0.29
21 11 0.52
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (20 bp):
TTTTTTTTTCTTTCTTTTCT
Found at i:27085117 original size:16 final size:17
Alignment explanation
Indices: 27085077--27085122 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
27085067 ATATATATGG
* *
27085077 AAATGCAATGACAATGT
1 AAATGCAGTGACAATGA
*
27085094 AGATGCAGTGACAAT-A
1 AAATGCAGTGACAATGA
27085110 AAATGCAGTGACA
1 AAATGCAGTGACA
27085123 GAAGAAATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (17 bp):
AAATGCAGTGACAATGA
Found at i:27094889 original size:17 final size:19
Alignment explanation
Indices: 27094858--27094900 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 19
27094848 CAAGGATAAG
*
27094858 AAAAGAAAGAGGAAGGACA
1 AAAAGAAAGAGGAAGCACA
27094877 AAAAGAAA-A-GAAGCACA
1 AAAAGAAAGAGGAAGCACA
27094894 AATAAGA
1 AA-AAGA
27094901 GGAAGAAAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 9 0.41
18 5 0.23
19 8 0.36
ACGTcount: A:0.67, C:0.07, G:0.23, T:0.02
Consensus pattern (19 bp):
AAAAGAAAGAGGAAGCACA
Found at i:27095022 original size:17 final size:18
Alignment explanation
Indices: 27094983--27095026 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
27094973 ATGCATCTCA
* *
27094983 TTTAATTGTCATTGCATT
1 TTTATTTGTCACTGCATT
27095001 TTTATTTGTCACTGCA-T
1 TTTATTTGTCACTGCATT
27095018 TTTATTTGT
1 TTTATTTGT
27095027 TAGAACATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.18, C:0.11, G:0.11, T:0.59
Consensus pattern (18 bp):
TTTATTTGTCACTGCATT
Found at i:27097151 original size:23 final size:23
Alignment explanation
Indices: 27097117--27097333 Score: 272
Period size: 23 Copynumber: 9.4 Consensus size: 23
27097107 GGAAGGGGTC
* *
27097117 AATATTTAAGCATAAATCACCTT
1 AATATTTAAGCACAAATCACATT
* *
27097140 AATATTTGAGCACAAATCAAATT
1 AATATTTAAGCACAAATCACATT
* *
27097163 AATATTTAAGTACAAATCAAATT
1 AATATTTAAGCACAAATCACATT
* * *
27097186 AATATTTGAGCAAAAATCATATT
1 AATATTTAAGCACAAATCACATT
* * *
27097209 AACATTTAAGCAAAAATCATATT
1 AATATTTAAGCACAAATCACATT
*
27097232 AATATTTAAGCACAAATCACAAT
1 AATATTTAAGCACAAATCACATT
*
27097255 AATATTTAAGCACAAATCACAAT
1 AATATTTAAGCACAAATCACATT
* *
27097278 AATATTTAAGCATAAATCGCATT
1 AATATTTAAGCACAAATCACATT
**
27097301 AATATTTAAGCTTAAATCACATT
1 AATATTTAAGCACAAATCACATT
27097324 AATATTTAAG
1 AATATTTAAG
27097334 AATGGATATA
Statistics
Matches: 173, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 173 1.00
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (23 bp):
AATATTTAAGCACAAATCACATT
Found at i:27107458 original size:27 final size:27
Alignment explanation
Indices: 27107417--27107469 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
27107407 TCTGAGAGAT
*
27107417 TTGTTAACTTGTTAGTAGGAGTAGAAG
1 TTGTTAACTTATTAGTAGGAGTAGAAG
*
27107444 TTGTTAGCTTATTAGTAGGAGTAGAA
1 TTGTTAACTTATTAGTAGGAGTAGAA
27107470 ATCTGATACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.28, T:0.38
Consensus pattern (27 bp):
TTGTTAACTTATTAGTAGGAGTAGAAG
Found at i:27107481 original size:27 final size:26
Alignment explanation
Indices: 27107423--27107482 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
27107413 AGATTTGTTA
* * *
27107423 ACTTGTTAGTAGGAGTAGAAGTTGTT
1 ACTTATTAGTAGGAGTAGAAATTGAT
27107449 AGCTTATTAGTAGGAGTAGAAATCTGAT
1 A-CTTATTAGTAGGAGTAGAAAT-TGAT
27107477 ACTTAT
1 ACTTAT
27107483 GTTGAAGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 24 0.83
28 4 0.14
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
ACTTATTAGTAGGAGTAGAAATTGAT
Found at i:27138765 original size:24 final size:25
Alignment explanation
Indices: 27138730--27138777 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
27138720 TGCAGAAACT
*
27138730 AAAGAAACAAATTAA-AGTAAAATA
1 AAAGAAACAAATTAATAGAAAAATA
27138754 AAAGACAA-AAATTAATAGAAAAAT
1 AAAGA-AACAAATTAATAGAAAAAT
27138778 TTGCAATGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.71, C:0.04, G:0.08, T:0.17
Consensus pattern (25 bp):
AAAGAAACAAATTAATAGAAAAATA
Found at i:27150106 original size:7 final size:8
Alignment explanation
Indices: 27150091--27150120 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
27150081 ATGTAAGTCT
27150091 TTAAAAAA
1 TTAAAAAA
*
27150099 ATAAAAAA
1 TTAAAAAA
27150107 TTAAAAAA
1 TTAAAAAA
27150115 TTAAAA
1 TTAAAA
27150121 GTCTCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
TTAAAAAA
Found at i:27163465 original size:10 final size:10
Alignment explanation
Indices: 27163450--27163475 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
27163440 AAGGGATTTA
27163450 CAACAACAAC
1 CAACAACAAC
27163460 CAACAACAAC
1 CAACAACAAC
27163470 CAACAA
1 CAACAA
27163476 TAGTAGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.38, G:0.00, T:0.00
Consensus pattern (10 bp):
CAACAACAAC
Found at i:27173350 original size:3 final size:3
Alignment explanation
Indices: 27173331--27173376 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
27173321 CTGTGGAGAT
*
27173331 AGA AGA GAGA A-A AGA AGA AGA AGA AAA AGA AGAA AGA AG- AGA AGA
1 AGA AGA -AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA AGA
27173376 A
1 A
27173377 CCTGATGTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 4 0.11
3 27 0.73
4 6 0.16
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:27173768 original size:17 final size:16
Alignment explanation
Indices: 27173748--27173804 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
27173738 CATATCATCA
27173748 CATTTCGTTTGTCATTG
1 CATTTC-TTTGTCATTG
* * *
27173765 CATTTTTCTTATCACTG
1 CATTTCT-TTGTCATTG
*
27173782 CATCTTCATTGTCATTG
1 CAT-TTCTTTGTCATTG
27173799 CATTTC
1 CATTTC
27173805 CATATATATT
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
16 4 0.13
17 25 0.81
18 2 0.06
ACGTcount: A:0.16, C:0.23, G:0.11, T:0.51
Consensus pattern (16 bp):
CATTTCTTTGTCATTG
Done.