Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55708359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2600 characters in sequence are not A, C, G, or T
File 89 of 182
Found at i:28522646 original size:216 final size:217
Alignment explanation
Indices: 28522255--28523617 Score: 1478
Period size: 216 Copynumber: 6.3 Consensus size: 217
28522245 TATAAATTCG
* * * * * * *
28522255 CATTATTTAAACTAGTTTTGGTCTTTGGATTAAAAACATATTTACATCAGAATTATTTCTCTCTT
1 CATTTTTTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * * *
28522320 GGTTCTTGGATGAACTTTCAAACTTCTCAAATTTTTACGATTTCTTTTATAACTTTGCTTCTTTA
66 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * * *
28522385 AAGTATT-AGAGACAATCCATTCCTTGGATCAATTTTTTGAATATTTAATGCTCGTA-AAATCGC
131 AAGTATTCA-AGAGAATCCATTCCTTTGAGCAAATTTTCGAACATTTCATGCTCGTAGAAATCAC
28522448 ATCATTTGGTCTAAATAGTTTGT
195 ATCATTTGGTCTAAATAGTTTGT
* * * *
28522471 CATTTTTTAAACAAGTTTTGGTATTTGGATTAAAAACTTATTTACGTGAGAATTGTTTTTCTGTT
1 CATTTTTTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * *
28522536 GGTTTTTTGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTA
66 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * *
28522601 AAGTATT-AGAGAGAATCCATTCCTTTGATCAAATTTTCAAATATTTCATGCTCGT-GAAATCAC
131 AAGTATTCA-AGAGAATCCATTCCTTTGAGCAAATTTTCGAACATTTCATGCTCGTAGAAATCAC
*
28522664 ATCATTTGGTCTAAATAGTTTCT
195 ATCATTTGGTCTAAATAGTTTGT
* *
28522687 CATTTTTTAAACAAGTTTTGGTCTTT-AGATTAAAAACTTATTTACTTGA-AATTATTTCTCTCT
1 CATTTTTTAAACAAGTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* *
28522750 TGGTTCTTGGACGAACTTTCGATCTTGACAAACTTTTACGAGTTC--TTATAACTTCGGTTCCTT
65 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
** *
28522813 AAAGTATTCAAGACTATCCATT-CTTTCCAGC-AATTTGTCGAACA-TTCTATGCTCG-AGAAAT
130 AAAGTATTCAAGAGAATCCATTCCTTT-GAGCAAATTT-TCGAACATTTC-ATGCTCGTAGAAAT
* *
28522874 CACATTATTTTGTCTAAATAGTTTGT
192 CACATCATTTGGTCTAAATAGTTTGT
* * * * *
28522900 C-TTTTTATAAACAAGTTTTGGTTTTTGAATTAAAATCCTATTTATGTGATAATTGTTTCTCTCT
1 CATTTTT-TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * *
28522964 TGGTTGTTGGACAAACTTTCGAACTTATCAAACTTTTACGAGTTCTCTTATAACTTCGATTTCTT
65 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* ** * * **
28523029 AAAGTATTCAAGACG-ATTCATTCCTTCCAGCAATTTTTCGAACATTACATGCT--TAGGAAGCC
130 AAAGTATTCAAGA-GAATCCATTCCTTTGAGCAAATTTTCGAACATTTCATGCTCGTA-GAAATC
* * *
28523091 GCATTATTTGGTCTAAAAAGTTTGT
193 ACATCATTTGGTCTAAATAGTTTGT
* * * * *
28523116 CATTTTGTAAACAACTTTAGGTCTTTGAACTAAAAACTTATTTACGTGAGCATTGTTTCTCTCTT
1 CATTTTTTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * *
28523181 GATTCTTTGACGAACTATCGAACTTGTCAAATTTTTATGAGTTCTTCTATAAC-TCTGGTTCCTT
66 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GGTTCCTT
* *
28523245 AAAGTATTCAAGA-AGATCCATAT-CTTCGA-AAAATTTTCTGAACATTTCATGCTCG-AGAAAT
130 AAAGTATTCAAGAGA-ATCCAT-TCCTTTGAGCAAATTTTC-GAACATTTCATGCTCGTAGAAAT
*
28523306 CACATCATTAGGTCTAAATAGTTTGT
192 CACATCATTTGGTCTAAATAGTTTGT
* * * * **
28523332 CATTTTGTAAACAAGTTTTAGTGTTTGAATTAGAATTTTATTTACGTGAGAATTGTTTCTCTCTT
1 CATTTTTTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * *
28523397 GGTCCTTGGACGAAC-TTCTGAAGTTGTCAAACTTTTACGAGTTCTTTTGTAACTTCGGTTCGTT
66 GGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * * * * * * *
28523461 ACAGTATTCAAGACG-ATCCATTCCTTTTAACAATTTTTCAAACATTCCATGCTTG-CGAAGTCG
130 AAAGTATTCAAGA-GAATCCATTCCTTTGAGCAAATTTTCGAACATTTCATGCTCGTAGAAATCA
*
28523524 CCTCATTTGGTCTAAATAGTTTGT
194 CATCATTTGGTCTAAATAGTTTGT
* * * * *
28523548 CATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTTTTTCTCTCTT
1 CATTTTTTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
28523613 GGTTC
66 GGTTC
28523618 CTTGTCAAAC
Statistics
Matches: 967, Mismatches: 148, Indels: 64
0.82 0.13 0.05
Matches are distributed among these distances:
212 17 0.02
213 114 0.12
214 55 0.06
215 63 0.07
216 694 0.72
217 24 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.43
Consensus pattern (217 bp):
CATTTTTTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
AAGTATTCAAGAGAATCCATTCCTTTGAGCAAATTTTCGAACATTTCATGCTCGTAGAAATCACA
TCATTTGGTCTAAATAGTTTGT
Found at i:28523388 original size:432 final size:432
Alignment explanation
Indices: 28522262--28528734 Score: 6901
Period size: 432 Copynumber: 15.2 Consensus size: 432
28522252 TCGCATTATT
* * * * *
28522262 TAAACTAGTTTTGGTCTTTGGATTAAAAACATATTTACATCAGAATTATTTCTCTCTTGGTTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * * * * * *
28522327 GGATGAACTTTCAAACTTCTCAAATTTTTACGATTTCTTTTATAACTTTGCTTCTTTAAAGTATT
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * *
28522392 -AGAGACA-ATCCATTCCTTGGATCAATTTTTTGAATATTTAATGCTCGTA-AAATCGCATCATT
131 CA-AGA-AGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCG-AGAAATCGCATCATT
* * *
28522454 TGGTCTAAATAGTTTGTCATTTTTTAAACAAGTTTTGGTATTTGGATTAAAAACTTATTTACGTG
193 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * *
28522519 AGAATTGTTTTTCTGTTGGTTTTTTGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTT
258 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * *
28522584 ATAACTTCGGTTCCTTAAAGTATTAGAGA-GAATCCATTCCTTTGATCAAATTTTCAAATATTTC
323 ATAACTTCGGTTCCTTAAAGTATTA-AGACG-ATCCATTCCTTCGAGCAATTTTTCGAACATTCC
* * *
28522648 ATGC-TCGTGAAATCACATCATTTGGTCTAAATAGTTTCTCATTTTT
386 ATGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
*
28522694 TAAACAAGTTTTGGTCTTT-AGATTAAAAACTTATTTACTTGA-AATTATTTCTCTCTTGGTTCT
1 TAAACAAGTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT
* *
28522757 TGGACGAACTTTCGATCTTGACAAACTTTTACGAGTTC--TTATAACTTCGGTTCCTTAAAGTAT
65 TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
** * * * *
28522820 TCAAGACTATCCATTCTTTCCAGCAATTTGTC-GAACA-TTCTATGCTCGAGAAATCACATTATT
130 TCAAGAAGATCCATTCCTTCGAGCAATTT-TCTGAACATTTC-ATGCTCGAGAAATCGCATCATT
* * * * * * *
28522883 TTGTCTAAATAGTTTGTCTTTTTATAAACAAGTTTTGGTTTTTGAATTAAAATCCTATTTATGTG
193 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * *
28522948 ATAATTGTTTCTCTCTTGGTTGTTGGACAAACTTTCGAACTTATCAAACTTTTACGAGTTCTCTT
258 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * *
28523013 ATAACTTCGATTTCTTAAAGTATTCAAGACGATTCATTCCTTCCAGCAATTTTTCGAACATTACA
323 ATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* ** * *
28523078 TGCTTAG-GAAGCCGCATTATTTGGTCTAAAAAGTTTGTCATTTTG
387 TGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * *
28523123 TAAACAACTTTAGGTCTTTGAACTAAAAACTTATTTACGTGAGCATTGTTTCTCTCTTGATTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * * *
28523188 TGACGAACTATCGAACTTGTCAAATTTTTATGAGTTCTTCTATAAC-TCTGGTTCCTTAAAGTAT
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GGTTCCTTAAAGTAT
** * *
28523252 TCAAGAAGATCCATAT-CTTCGAAAAATTTTCTGAACATTTCATGCTCGAGAAATCACATCATTA
130 TCAAGAAGATCCAT-TCCTTCGAGCAATTTTCTGAACATTTCATGCTCGAGAAATCGCATCATTT
* * * **
28523316 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTAGTGTTTGAATTAGAATTTTATTTACGTGA
194 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* *
28523381 GAATTGTTTCTCTCTTGGTCCTTGGACGAAC-TTCTGAAGTTGTCAAACTTTTACGAGTTCTTTT
259 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** * *
28523445 GTAACTTCGGTTCGTTACAGTATTCAAGACGATCCATTCCTTTTAACAATTTTTCAAACATTCCA
323 ATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
* * *
28523510 TGCTT-GCGAAGTCGCCTCATTTGGTCTAAATAGTTTGTCATTTTG
387 TGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
28523555 TAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT-TTT-TCTC-----TCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
*
28523613 -G--G----TTC---CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAG---T
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * *
28523665 --AG-AG-T-CATTCCTTCGAGCAATTTTTTGAA-ATTTCATTCT-TAGGAAATCACATCATTTG
131 CAAGAAGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGA-GAAATCGCATCATTTG
* * * *
28523723 GTCTAAACAGTTTGTTATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTTTTTACGTGAG
195 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* ** *
28523788 AA-T-TCTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTAT
260 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * *
28523851 AACTTCTGTTCCTTAAAGTATTTAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTCCATG
325 AACTTCGGTTCCTTAAAGTA-TTAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
** * ** *
28523916 C-AAGGGAAATCTTATCATTTGGTCTAAATCGTTTGTCATTTTG
389 CTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
** * * *
28523959 TAAACAACATTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTTTTGGTTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * **
28524024 GGACAAACTTTCGATCTTGTCAAACTGTTACGAGTTCTTTTATAACTTCGGTTTATTAAAGTATT
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * * **
28524089 CAAGATGAGCCATTCCTTCGATCAATTTT-TCGAATATTCCATGCTCGTGAAACCATATCATTTG
131 CAAGAAGATCCATTCCTTCGAGCAATTTTCT-GAACATTTCATGCTCGAGAAATCGCATCATTTG
* * * * *
28524153 GTCGAAATAGTTTCTCATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACATGAG
195 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * *
28524218 AATTATTTCTCTCTTGGTTCTTAGACAAAC-TT----CTTGTCAAACTTTTACGAGTTCTTTTAT
260 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *
28524278 AACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGATCAATTTTTTGAA-AGTCCATG
325 AACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
*
28524342 C-TCGTGATATCGCATCATTT-GTCT-AA-A------C--TTT-
389 CTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
28524373 T--ACGAGTTTTGGTCTTTGGATTAAAAA-TCTATTTACGTGAGAATTGTTTCTCTCTTGGGTCT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTATTTCTCTCTTGGTTCT
* * * * *
28524435 TTGACGAACTTTTGAATTTGTTAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTAT
65 TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * * * * * * *
28524500 TCAATATGATCTATTCCTTCGAGCAATTTCCCGAACAATCCATGCT-TAGGAAATCGTATCATAT
130 TCAAGAAGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGA-GAAATCGCATCATTT
* * * *
28524564 GGTCTAAATAGTTTGCCATTTTGTAAATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGA
194 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * *
28524629 GAATTGTTTCCCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAATTTTACGATTTCTATTA
259 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA
** * * *
28524694 TAACTTCGGTTCCTTAAAGTATTTAAGACGATACTTTTCC-TCGAGCAAATTTTT-AAACAATAC
324 TAACTTCGGTTCCTTAAAGTA-TTAAGACGAT-CCATTCCTTCGAGC-AATTTTTCGAACATTCC
* * * * *
28524757 TTGCTT-GGGAAATCGCATCATTTGATCTAAATAGTTTGCCATTTTA
386 ATGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
28524803 TAAACAAG-TTTGCTCTTTAAATTAAAAACTTATTTACGTGAAAATTATTTCTCTCTTGATTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * *
28524867 GGACGAAC-TTCCAATCTTTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGT-T
66 GGACGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * **
28524930 T-TAGACTCA-ATCCATTCCTTCGATCAATTTTC-GAA-ATATTCCATGCTCGTGAAATCATATC
130 TCAAGA---AGATCCATTCCTTCGAGCAATTTTCTGAACAT-TT-CATGCTCGAGAAATCGCATC
* * * * *
28524991 ATTTAGTCTAAATAGTTTTTTTATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTA
190 ATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * ** * * *
28525056 TGTGAGAATTATTTCTCTCTCGGTTCTTTTAC-AAGTTTCGAAATTGTCAAACTTTTACGATTTC
254 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTC
* * ** *
28525120 TTTTCTAACTTCGGTTCCTTAAAGTATTCAAGATGATACTTTTCCTT-GAACAATTTTTCGAACA
319 TTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGAT-CCATTCCTTCGAGCAATTTTTCGAACA
* * *
28525184 ATCCATGC-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
382 TTCCATGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
28525234 TAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCAT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * *
28525299 AGACGAACTTTCGAATTTGTCAAACTTTTACGAGTTC-TTTAT-AC--CAGTTCCTTGAAGTATT
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * *
28525360 CAA-AATGAT-AATTTCCTTCGAGCAATTTT-TCAAAAAATCCTTACTCG-GAAAATCGCATCAT
131 CAAGAA-GATCCA-TTCCTTCGAGCAATTTTCT-GAACATTTCATGCTCGAG-AAATCGCATCAT
** * * * *
28525421 TTCATCTAAATTAG-TTGTCATTTTGTAAACAAGTTTTGTTCTTTAAATTAAAAACATATTTGCG
192 TTGGTCTAAA-TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
28525485 TGAGAATTGTTTCTCTCTTGATTCTTGGACGAAC-TTCCAATCTTTTCAAACTTTTACGAGTTC-
256 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTCT
* * * * * *
28525548 TTTATAACTTCAGTTCCTTAAAGTATTAGAGGCAATCCATTCCATCGATG-GATTTTT-GAAATA
320 TTTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTCCTTCGA-GCAATTTTTCG-AACA
* *
28525611 TTCCATGC-TCGTAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTT
382 TTCCATGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
28525661 TAAA-AATGTTTTTGTCTTTGGATTAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCT
1 TAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT
* * * * * *
28525725 TGGACGAAGTTTTGATCTTGTCAAACTTTTACAAGTTCTTTTATAACTT-GAGTTCATTAAAGAA
65 TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-GTTCCTTAAAGTA
* * * * * ** *
28525789 TTCAAGACGATTCATTCATTCGATCAATTTT-TCGAATATCCCATGTTCGTA-AAATCGCATCAT
129 TTCAAGAAGATCCATTCCTTCGAGCAATTTTCT-GAACATTTCATGCTCG-AGAAATCGCATCAT
* * * ** * * *
28525852 TTGGTTTAAATAGTTTCTCACTTTT-TAAAAAAAATTTGGTCTTTGGATTAAAACCTTATTTACA
192 TTGGTCTAAATAGTTTGTCA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * *
28525916 TGAGAATTATTTCTCTCTTAGTTCTTAGACGAACTTTCGAACTTGTCAAACTTTTAAGAGTTCTT
256 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * *
28525981 TTATAACTTTGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGATCAATTTTTTGAATAATC
321 TTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * * *
28526046 CATGC-TCGTGAAATCGAATCATTTGGTCCAAATAGTTTCTCATTTTT
385 CATGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
** *
28526093 TAAACAAGTTTTACTCTTTGGATTAAAAACTTATTTACGTGAG----A------TCTTGGTTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * *
28526148 TGATGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * *
28526213 CAATACGATCCATTCCTTCGAGCAATTTCCCGAACAATCCATGCTCGAGAAATCGTATCATTTGG
131 CAAGAAGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGAGAAATCGCATCATTTGG
* * * *
28526278 TCTAAATAGTTTGTTATTTTGTAAATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGA
196 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * *
28526343 ATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGACAAACTTTTACGATTTCTTTTACA
261 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * * * *
28526408 ACTTCGGTTCCTTAAAGTATTCAAGACAATACTTTCCCTCGAGCAATTTTTCGAACAATACTTGC
326 ACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * *
28526473 -TCGGGAAATCACATCATTTGATCTAAATAG-TTGTCATTTTG
390 TTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
28526514 TAAACAAGTTTAT-GTCTTTAAATTAAAAACTTATTTATGTGATAATTGTTTCTCTTTTGGTTCT
1 TAAACAAGTTT-TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT
* * * * *
28526578 TGGACGAACTTTCGATCTTGTCAAACTTTTACGAGTTCTTTCATAAATTCGATTCCTTAAAGTAA
65 TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * * *
28526643 T--AGAGGCAATCCATTCCTTCGATCAATTTT-TGAA-ATATTCCGTGCTTGTGAAATCGTATCA
130 TCAAGAAG--ATCCATTCCTTCGAGCAATTTTCTGAACAT-TT-CATGCTCGAGAAATCGCATCA
* * *
28526704 TTTGGTCTAAATAGTTTGTCATTTTGTAATCAAGTTTTGGTCTTTGGATTAAAAAATTATTTACG
191 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * *
28526769 TGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCAAACTTGTCAAACTTTTATGAGTTCTT
256 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* * * *
28526834 TTATAACTTCGTTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACAATC
321 TTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
28526899 CATGC-TCAG-GAAATCGCATCATTTGGTCTAAATAGTTTG-CTATTTTG
385 CATGCTTC-GTGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTG
* * * *
28526946 TAGACAAGTTTTGGTGTTTGAATTAAGATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * * * *
28527011 GGACGAA-TTTCTAAACTTGTCAAACTTTTATGATTTATTTTCTAACTTCGGTTCCTTAAAGCAT
66 GGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * * * * *
28527075 TCAAGAAGATACTTTCCCTCAAGCAATTTTTTAAACAATTCATGCTCGAGAAATTGCATCATTTG
130 TCAAGAAGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGAGAAATCGCATCATTTG
* * *
28527140 GTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTC-TTGAAATTAAAATCTTTTTTACGTGA
195 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG-AATTAAAAACTTATTTACGTGA
* *
28527204 GAGTTGTTTCTCTCTT-ATGTCTTGGACGAAC-TTCTGAACTTGTCAAACTTTTA-GAAGTTCTT
259 GAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACG-AGTTCTT
* * * *
28527266 TTATAACTTCGGTTCCTTAAAGTATTAGAGGCAATCCATTCCTTCGATCAATTTTT-GAAATATT
321 TTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTCCTTCGAGCAATTTTTCG-AACATT
* * *
28527330 TCATGCTT-GTGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTT
384 CCATGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * *
28527378 TAAACATGTTTTGGTGTTTGGATTAAAAACATATTTACGTAAGAATTGTTTCTCTCTTGGTTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * *
28527443 TGACGAACTTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAATATT
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * * * * * * *
28527508 CAAGACGATACTTTCCCTCGAGTAATTTTTTGAACAATACTTGCTCGGGAAATCACATCATTTGA
131 CAAGAAGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGAGAAATCGCATCATTTGG
*
28527573 TCTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTCTTT-AAATAAAAACTTATTTACGTGAGA
196 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* *
28527636 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTATCAAACTTTTAAGAGTTCTTTTATA
261 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * * ** **
28527701 ACTTCGTTTCCTTAAAGTATTTAAGACGATACTTTTCGTCGAGCAATTTTTTAAACATTCTTTGC
326 ACTTCGGTTCCTTAAAGTA-TTAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
** * *
28527766 -TCGAAAAATAGCATCATTTGATCTAAATAG-TTGTCATTTTG
390 TTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
28527807 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAAATGTTTGTCTCTTGGTTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * * *
28527872 GGACAAACTTCCGAACTTGTCAAA-ATTTAAGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATT
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * *
28527936 -AGAGACA-ATCCATTCCTTAGATCAATTTTCTGAATAGTTCATGCTCGTGAAATCGCATCATTT
131 CA-AGA-AGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGAGAAATCGCATCATTT
* * * *
28527999 GGTCCAAATAGTTTCTCATTTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTG
194 GGTCTAAATAGTTTGTCA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * *
28528064 AGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCGAACTTATCAAACTTTTATGAGTTCTTTT
258 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * *
28528129 ATAACTTCAGTTCCTTAAAGTATTCATGATGATCCATTCCTTCGAACAATTTTT-GAACAATCCA
323 ATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
28528193 TGC-TCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
387 TGCTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
28528238 TAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* * * * * *
28528303 GGAGGAACTTTTGAACTTGTCAAACTTTTATGATTTCTTTTCTAACTTTGGTTCCTTAAAGTATT
66 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * * * *
28528368 GAAGACGATACTTTCCCTCGAGCAAGTTTTC-GAACAATCCATGCTCGGGATATCGCATCATTTG
131 CAAGAAGATCCATTCCTTCGAGCAA-TTTTCTGAACATTTCATGCTCGAGAAATCGCATCATTTG
* * * * *
28528432 GTCTAAATAGTTTGTCATTTTGCATACAAGTTTTGGTGTTTAAATTAAAATCTTATTTACGTGAG
195 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * *
28528497 AATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTATCAAAATTTTACGAGTTCTTTTAT
260 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * * * * * *
28528562 AACTTTGGTTCCTCAAAGTATTAGAGACAATCAATTCCTTCAATCAATTTTCCGAATAGTCCATA
325 AACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* * *
28528627 C-TCGTGAAATCGCATCATTTGGTCCAAATAGTTTCTCATTTTT
389 CTTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
28528670 TAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
1 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
28528735 TGATTGATAC
Statistics
Matches: 5080, Mismatches: 771, Indels: 380
0.82 0.12 0.06
Matches are distributed among these distances:
404 180 0.04
405 10 0.00
406 88 0.02
407 19 0.00
408 1 0.00
409 2 0.00
410 2 0.00
411 5 0.00
412 239 0.05
413 2 0.00
414 1 0.00
415 44 0.01
416 2 0.00
417 59 0.01
418 41 0.01
419 4 0.00
420 2 0.00
421 93 0.02
422 307 0.06
423 1 0.00
424 4 0.00
425 8 0.00
426 37 0.01
427 320 0.06
428 176 0.03
429 434 0.09
430 381 0.08
431 1198 0.24
432 1387 0.27
433 28 0.01
434 5 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (432 bp):
TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTT
GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
CAAGAAGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGAGAAATCGCATCATTTGG
TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
ACTTCGGTTCCTTAAAGTATTAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
TCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
Found at i:28524086 original size:216 final size:214
Alignment explanation
Indices: 28523618--28528734 Score: 4563
Period size: 216 Copynumber: 23.9 Consensus size: 214
28523608 CTCTTGGTTC
*
28523618 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAG---T-AGA-G-T-CATTCC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAGACGATCCATTCC
* * * * *
28523676 TTCGAGCAATTTTTTGAAATTTCATTCTTA-GGAAATCACATCATTTGGTCTAAA-CAGTTTGTT
66 TTCGAGCAATTTTTCGAAATTCCATGC-TAGGGAAATCATATCATTTGGTCTAAATC-GTTTGTC
* * * * *
28523739 ATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTTTTTACGTGAGAA-T-TCTCTCTCTTA
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
* * *
28523802 ATTCTTGGACGAACTTTCGAA
194 GTTCTTGGACAAACTTTCGAT
* * *
28523823 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTTAAGACGATCCAATC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTAAGACGATCCATTC
* * *
28523888 CTTCAAGCAATTTTTCGAACATTCCATGCAAGGGAAATCTTATCATTTGGTCTAAATCGTTTGTC
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTC
** * *
28523953 ATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTTTTG
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
28524018 GTTCTTGGACAAACTTTCGAT
194 GTTCTTGGACAAACTTTCGAT
* ** * *
28524039 CTTGTCAAACTGTTACGAGTTCTTTTATAACTTCGGTTTATTAAAGTATTCAAGATGAGCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
* * * * * * *
28524104 CTTCGATCAATTTTTCGAATATTCCATGCTCGTGAAACCATATCATTTGGTCGAAATAGTTTCTC
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTC
* *
28524169 ATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
*
28524234 GTTCTTAGACAAAC--T---T
194 GTTCTTGGACAAACTTTCGAT
*
28524250 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTC
* * * * * * **
28524315 CTTCGATCAATTTTTTGAAAGTCCATGCTCGTGATATCGCATCATTT-GTCTAAA--------C-
65 CTTCGAGCAATTTTTCGAAATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTCA
* * * *
28524370 -TTT-T--ACGAGTTTTGGTCTTTGGATTAAAAA-TCTATTTACGTGAGAATTGTTTCTCTCTTG
130 TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTTACATGAGAATTATTTCTCTCTTG
* * * *
28524430 GGTCTTTGACGAACTTTTGAAT
194 GTTCTTGGACAAACTTTCG-AT
* * * * *
28524452 -TTGTTAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAATATGATCTATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
** * * * * *
28524516 CTTCGAGCAATTTCCCGAACAATCCATGCTTA-GGAAATCGTATCATATGGTCTAAATAGTTTGC
65 CTTCGAGCAATTTTTCGAA-ATTCCATGC-TAGGGAAATCATATCATTTGGTCTAAATCGTTTGT
* * * * * *
28524580 CATTTTGTAAATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCCCTCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
* *
28524645 GGTTCTTGGACGAACTTTCGAA
193 GGTTCTTGGACAAACTTTCGAT
* * * **
28524667 CTTGTCAAAATTTTACGATTTCTATTATAACTTCGGTTCCTTAAAGTATTTAAGACGATACTTTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTAAGACGAT-CCATT
* * * * * ** * *
28524732 CC-TCGAGCAAATTTTT-AAACAATACTTGCTTGGGAAATCGCATCATTTGATCTAAATAGTTTG
64 CCTTCGAGC-AATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTG
* * * * * *
28524795 CCATTTTATAAACAAG-TTTGCTCTTTAAATTAAAAACTTATTTACGTGAAAATTATTTCTCTCT
127 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* * * *
28524859 TGATTCTTGGACGAACTTCCAAT
192 TGGTTCTTGGACAAACTTTCGAT
* * * *
28524882 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGT-TTTAGACTCAATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAGA--CGATCCATT
* * * * *
28524946 CCTTCGATCAA-TTTTCGAAATATTCCATGCTCGTGAAATCATATCATTTAGTCTAAATAGTTTT
64 CCTTCGAGCAATTTTTCG-AA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCG-TTT
* * * * **
28525010 TTTATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTC
126 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* ** * *
28525075 TCGGTTCTTTTAC-AAGTTTCGAA
191 TTGGTTCTTGGACAAACTTTCGAT
* * * * **
28525098 ATTGTCAAACTTTTACGATTTCTTTTCTAACTTCGGTTCCTTAAAGTATTCAAGATGATACTTTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGAT-CCATT
* * * ** * *
28525163 CCTT-GAACAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTT
64 CCTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGT
* * * *
28525227 CATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
* * *
28525292 GGTTCATAGACGAACTTTCGAAT
193 GGTTCTTGGACAAACTTTCG-AT
* * * * *
28525315 -TTGTCAAACTTTTACGAGTTC-TTTAT-AC--CAGTTCCTTGAAGTATTCAAAATGAT-AATTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCA-TT
* * * * * * ** ** *
28525374 CCTTCGAGCAATTTTTCAAAAAATCCTTACTCGGAAAATCGCATCATTTCATCTAAATTAG-TTG
64 CCTTCGAGCAATTTTTC-GAAATTCCATGCTAGGGAAATCATATCATTTGGTCTAAA-TCGTTTG
* * * * * *
28525438 TCATTTTGTAAACAAGTTTTGTTCTTTAAATTAAAAACATATTTGCGTGAGAATTGTTTCTCTCT
127 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* * * *
28525503 TGATTCTTGGACGAACTTCCAAT
192 TGGTTCTTGGACAAACTTTCGAT
* * * *
28525526 CTTTTCAAACTTTTACGAGTTC-TTTATAACTTCAGTTCCTTAAAGTATTAGAGGCAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTC
* * * ** ** *
28525590 CATCGATG-GATTTTT-GAAATATTCCATGCTCGTAAAATCGCATCATTTGGTCTAAATAGTTTG
65 CTTCGA-GCAATTTTTCG-AA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTG
* * * * *
28525653 TCATTTTTTAAA-AATGTTTTTGTCTTTGGATTAAAAACTTATTTACGTAAGAATTATTTCTCTC
127 TCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* * *
28525717 TTGGTTCTTGGACGAAGTTTTGAT
191 TTGGTTCTTGGACAAACTTTCGAT
* * * *
28525741 CTTGTCAAACTTTTACAAGTTCTTTTATAACTT-GAGTTCATTAAAGAATTCAAGACGATTCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-GTTCCTTAAAGTATT-AAGACGATCCATT
* * * * * ** ** * * *
28525805 CATTCGATCAATTTTTCGAATATCCCATGTTCGTAAAATCGCATCATTTGGTTTAAATAGTTTCT
64 CCTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGT
* ** * *
28525870 CACTTTT-TAAAAAAAATTTGGTCTTTGGATTAAAACCTTATTTACATGAGAATTATTTCTCTCT
128 CA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* * * *
28525934 TAGTTCTTAGACGAACTTTCGAA
192 TGGTTCTTGGACAAACTTTCGAT
* * *
28525957 CTTGTCAAACTTTTAAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAGAGACAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTC
* * * * * * * *
28526022 CTTCGATCAATTTTTTGAATAATCCATGCTCGTGAAATCGA-ATCATTTGGTCCAAATAGTTTCT
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATC-ATATCATTTGGTCTAAATCGTTTGT
* ** * *
28526086 CATTTTTTAAACAAGTTTTACTCTTTGGATTAAAAACTTATTTACGTGAG----A------TCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
* ** *
28526141 GGTTCTTTGATGAACTTTCGAA
193 GGTTCTTGGACAAACTTTCGAT
* * *
28526163 CTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAATACGATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
** * * * * * *
28526228 CTTCGAGCAATTTCCCGAACAATCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTT
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTC
* * * *
28526293 ATTTTGTAAATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTG
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
* *
28526358 GTTCTTGGACGAACTTTCGAA
194 GTTCTTGGACAAACTTTCGAT
* * * * * * *
28526379 CTAGACAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGACAATACTTTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
* * * * * * * *
28526444 CCTCGAGCAATTTTTCGAACAATACTTGCTCGGGAAATCACATCATTTGATCTAAATAG-TTGTC
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTC
* ** * * *
28526508 ATTTTGTAAACAAGTTTAT-GTCTTTAAATTAAAAACTTATTTATGTGATAATTGTTTCTCTTTT
129 ATTTTGTAAACAAGTTT-TGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
*
28526572 GGTTCTTGGACGAACTTTCGAT
193 GGTTCTTGGACAAACTTTCGAT
* * * * * *
28526594 CTTGTCAAACTTTTACGAGTTCTTTCATAAATTCGATTCCTTAAAGTAATAGAGGCAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTC
* * * * * *
28526659 CTTCGATCAATTTTT-GAAATATTCCGTGCTTGTGAAATCGTATCATTTGGTCTAAATAGTTTGT
65 CTTCGAGCAATTTTTCG-AA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGT
* * * * *
28526723 CATTTTGTAATCAAGTTTTGGTCTTTGGATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
* * * * *
28526788 GGTTCTTTGACGAACTTCCAAA
193 GGTTCTTGGACAAACTTTCGAT
* * *
28526810 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGTTTCCTTAAAGCATTCAAGACGATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
* * ** *
28526875 CTTTGAGCAATTTTTCGAACAATCCATGCTCA-GGAAATCGCATCATTTGGTCTAAATAGTTTG-
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCT-AGGGAAATCATATCATTTGGTCTAAATCGTTTGT
* * * * *
28526938 CTATTTTGTAGACAAGTTTTGGTGTTTGAATTAAGATCTTATTTACGTGAGAATTATTTCTCTCT
128 C-ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* * *
28527003 TGGTTCTTGGACGAA-TTTCTAAA
192 TGGTTCTTGGACAAACTTTC-GAT
* * * * * * * *
28527026 CTTGTCAAACTTTTATGATTTATTTTCTAACTTCGGTTCCTTAAAGCATTCAAGAAGATACTTTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
* * ** * * *** * *
28527091 CCTCAAGCAATTTTTTAAACAATT-CATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTTT
65 CTTCGAGCAA-TTTTTCGA-AATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGT
* * * * *
28527155 CATTTTGTAAACAAGTTTTGGTC-TTGAAATTAAAATCTTTTTTACGTGAGAGTTGTTTCTCTCT
128 CATTTTGTAAACAAGTTTTGGTCTTTG-AATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* * *
28527219 T-ATGTCTTGGACGAAC-TTCTGAA
192 TGGT-TCTTGGACAAACTTTC-GAT
* *
28527242 CTTGTCAAACTTTTA-GAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGGCAATCCATT
1 CTTGTCAAACTTTTACG-AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATT
* * * * * *
28527306 CCTTCGATCAATTTTT-GAAATATTTCATGCTTGTGAAAT-AGCATCATTTGGTCTAAATAGTTT
64 CCTTCGAGCAATTTTTCG-AA-ATTCCATGCTAGGGAAATCA-TATCATTTGGTCTAAATCGTTT
* * * * * * * *
28527369 GTCATTTTTTAAACATGTTTTGGTGTTTGGATTAAAAACATATTTACGTAAGAATTGTTTCTCTC
126 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* * * *
28527434 TTGGTTCTTTGACGAACTTCCGAA
191 TTGGTTCTTGGACAAACTTTCGAT
* * * *
28527458 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATACTTTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
* * * * * * * * * *
28527523 CCTCGAGTAATTTTTTGAACAATACTTGCTCGGGAAATCACATCATTTGATCTAAATAG-TTGTC
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTC
* * *
28527587 ATTTTGTAAACAAGTTTTGGTCTTT-AAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
* *
28527651 GTTCTTGGACGAACTTTCGAA
194 GTTCTTGGACAAACTTTCGAT
* * * * * *
28527672 CTTATCAAACTTTTAAGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTTAAGACGATACTTTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTAAGACGATCCATTC
* ** ** * ** * * *
28527737 CGTCGAGCAATTTTTTAAACATTCTTTGCTCGAAAAAT-AGCATCATTTGATCTAAATAG-TTGT
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCA-TATCATTTGGTCTAAATCGTTTGT
* * * * * *
28527800 CATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAAATGTTTGTCTCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
* *
28527865 GGTTCTTGGACAAACTTCCGAA
193 GGTTCTTGGACAAACTTTCGAT
* * * *
28527887 CTTGTCAAA-ATTTAAGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTAGAGACAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTC
* * * * ** * * *
28527951 CTTAGATCAA-TTTTCTGAATAGTT-CATGCTCGTGAAATCGCATCATTTGGTCCAAATAGTTTC
65 CTTCGAGCAATTTTTC-GAA-A-TTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTG
* * * *
28528014 TCATTTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
127 TCA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* * * *
28528079 TTGGTTCTTTGACGAACTTCCGAA
191 TTGGTTCTTGGACAAACTTTCGAT
* * * * *
28528103 CTTATCAAACTTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCATGATGATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
* * * * ** *
28528168 CTTCGAACAATTTTT-GAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTC
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTC
* * *
28528232 ATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTG
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
** * *
28528297 GTTCTTGGAGGAACTTTTGAA
194 GTTCTTGGACAAACTTTCGAT
* * * * * *
28528318 CTTGTCAAACTTTTATGATTTCTTTTCTAACTTTGGTTCCTTAAAGTATTGAAGACGATACTTTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AAGACGATCCATTC
* * * * * ** *
28528383 CCTCGAGCAAGTTTTCGAACAATCCATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTGTC
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTC
* * * * * * *
28528448 ATTTTGCATACAAGTTTTGGTGTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTG
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
*
28528513 GTTCTTGGACAAACTTTCGAA
194 GTTCTTGGACAAACTTTCGAT
* * * * * *
28528534 CTTATCAAAATTTTACGAGTTCTTTTATAACTTTGGTTCCTCAAAGTATTAGAGACAATCAATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTA-AGACGATCCATTC
* * * * * * * ** * * *
28528599 CTTCAATCAATTTTCCGAATAGTCCATACTCGTGAAATCGCATCATTTGGTCCAAATAGTTTCTC
65 CTTCGAGCAATTTTTCGAA-ATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTC
* * * *
28528664 ATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
28528729 GTTCTT
194 GTTCTT
28528735 TGATTGATAC
Statistics
Matches: 4157, Mismatches: 614, Indels: 271
0.82 0.12 0.05
Matches are distributed among these distances:
195 1 0.00
196 62 0.01
198 2 0.00
199 3 0.00
201 72 0.02
202 22 0.01
203 8 0.00
205 45 0.01
206 176 0.04
207 1 0.00
209 7 0.00
210 28 0.01
211 86 0.02
212 169 0.04
213 49 0.01
214 372 0.09
215 824 0.20
216 2055 0.49
217 166 0.04
218 9 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (214 bp):
CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAGACGATCCATTCC
TTCGAGCAATTTTTCGAAATTCCATGCTAGGGAAATCATATCATTTGGTCTAAATCGTTTGTCAT
TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGT
TCTTGGACAAACTTTCGAT
Found at i:28525200 original size:431 final size:428
Alignment explanation
Indices: 28523618--28528734 Score: 5348
Period size: 431 Copynumber: 12.0 Consensus size: 428
28523608 CTCTTGGTTC
* * *
28523618 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAG---T-AG--AGT-CATTCC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTAAGACAATCCATTCC
* * * * * * *
28523676 TTCGAGCAATTTTTTG-AAATTTCATTCTTAG-GAAATCACATCATTTGGTCTAAACAGTTTGTT
66 TTCGAGCAA-TTTTCGAAAATTCCATGC-TCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * * *
28523739 ATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTTTTTACGTGAGAA-T-TCTCTCTCTTA
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * *
28523802 ATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCTGTTCCTTAA
194 GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * ** * **
28523867 AGTATTTAAGACGAT-CCAATCCTTCAAGCAATTTTTCGAACATTCCATGCAAGGGAAATCTTAT
259 AGTA-TTAAGACGATACCATTCCTT-GAGCAATTTTT-GAACAATCCATGCTCGTGAAATCGCAT
* ** *
28523931 CATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTATTTA
321 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * * *
28523996 CATGAGAATTATTTCTCTTTTGGTTCTTGGACAAACTTTCGAT
386 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAT
* * ** ** *
28524039 CTTGTCAAACTGTTACGAGTTCTTTTATAACTTCGGTTTATTAAAGTATTCAAGATGAGCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT-AAGACAATCCATTC
* * * ** * *
28524104 CTTCGATCAATTTTTCGAATATTCCATGCTCGTGAAACCATATCATTTGGTCGAAATAGTTTCTC
65 CTTCGAGCAA-TTTTCGAAAATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * * *
28524169 ATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
129 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* *
28524234 GTTCTTAGACAAAC-TT----CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
194 GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * *
28524294 AGTATTAGAGACAAT-CCATTCCTTCGATCAATTTTTTGAA-AGTCCATGCTCGTGATATCGCAT
259 AGTATTA-AGACGATACCATTCCTT-GAGCAA-TTTTTGAACAATCCATGCTCGTGAAATCGCAT
* *
28524357 CATTT-GTCT-AA-A------C--TTT-T--ACGAGTTTTGGTCTTTGGATTAAAAA-TCTATTT
321 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTT
* * **
28524407 ACGTGAGAATTGTTTCTCTCTTGGGTCTTTGACGAACTTTTGAAT
385 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAT
* * ** *
28524452 -TTGTTAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAATATGATCTATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT-AAGACAATCCATTC
* * * *
28524516 CTTCGAGCAATTTCCCGAACAA-TCCATGCTTAG-GAAATCGTATCATATGGTCTAAATAGTTTG
65 CTTCGAGCAATTT-TCGAA-AATTCCATGC-TCGTGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * *
28524579 CCATTTTGTAAATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCCCTCT
127 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * *
28524644 TGGTTCTTGGACGAACTTTCGAACTTGTCAAAATTTTACGATTTCTATTATAACTTCGGTTCCTT
192 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
** * * * * * *
28524709 AAAGTATTTAAGACGATACTTTTCCTCGAGCAAATTTTTAAACAATACTTGCTTGGGAAATCGCA
257 AAAGTA-TTAAGACGATACCATTCCTTGAGC-AATTTTTGAACAATCCATGCTCGTGAAATCGCA
* * * * *
28524774 TCATTTGATCTAAATAGTTTGCCATTTTATAAACAAG-TTTGCTCTTTAAATTAAAAACTTATTT
320 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
* * *
28524838 ACGTGAAAATTATTTCTCTCTTGATTCTTGGACGAACTTCCAAT
385 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAT
* *
28524882 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGT-TTTAGACTCAATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTAAGA--CAATCCATT
* ** * *
28524946 CCTTCGATCAATTTTCGAAATATTCCATGCTCGTGAAATCATATCATTTAGTCTAAATAGTTTTT
64 CCTTCGAGCAATTTTCGAAA-ATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAG-TTTG
* * * * *
28525011 TTATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCT
127 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* ** * * * *
28525076 CGGTTCTTTTAC-AAGTTTCGAAATTGTCAAACTTTTACGATTTCTTTTCTAACTTCGGTTCCTT
192 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* ** * *
28525140 AAAGTATTCAAGATGATACTTTTCCTTGAACAATTTTTCGAACAATCCATGCTCGGGAAATCGCA
257 AAAGTATT-AAGACGATACCATTCCTTGAGCAATTTTT-GAACAATCCATGCTCGTGAAATCGCA
* * *
28525205 TCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTT
320 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
* * *
28525270 ACGTGAGAATTGTTTCTCTCTTGGTTCATAGACGAACTTTCGAAT
385 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAT
* * ** *
28525315 -TTGTCAAACTTTTACGAGTTC-TTTAT-AC--CAGTTCCTTGAAGTATTCAAAATGAT-AATTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT-AAGACAATCCA-TT
* * * * **
28525374 CCTTCGAGCAATTTTTCAAAAAATCCTTACTCG-GAAAATCGCATCATTTCATCTAAATTAG-TT
64 CCTTCGAGCAA-TTTTCGAAAATTCCATGCTCGTG-AAATCGCATCATTTGGTCTAAA-TAGTTT
* * * *
28525437 GTCATTTTGTAAACAAGTTTTGTTCTTTAAATTAAAAACATATTTGCGTGAGAATTGTTTCTCTC
126 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * *
28525502 TTGATTCTTGGACGAAC-TTCCAATCTTTTCAAACTTTTACGAGTTC-TTTATAACTTCAGTTCC
191 TTGGTTCTTGGACGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * *
28525565 TTAAAGTATTAGAGGCAAT-CCATTCCATCGATG-GATTTTTGAA-ATATTCCATGCTCGTAAAA
255 TTAAAGTATTA-AGACGATACCATTCC-TTGA-GCAATTTTTGAACA-A-TCCATGCTCGTGAAA
* * *
28525627 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAA-AATGTTTTTGTCTTTGGATTAAAAAC
315 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAAC
* * * ***
28525691 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAAGTTTTGAT
379 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAT
* * * * * *
28525741 CTTGTCAAACTTTTACAAGTTCTTTTATAACTTGAGTTCATTAAAGAATTCAAGACGATTCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT-AAGACAATCCATTC
* * * * * * * *
28525806 ATTCGATCAATTTTTCGAATATCCCATGTTCGTAAAATCGCATCATTTGGTTTAAATAGTTTCTC
65 CTTCGAGCAA-TTTTCGAAAATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* ** * * * *
28525871 ACTTTT-TAAAAAAAATTTGGTCTTTGGATTAAAACCTTATTTACATGAGAATTATTTCTCTCTT
129 A-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * *
28525935 AGTTCTTAGACGAACTTTCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTTGGTTCCTTA
193 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * *
28526000 AAGTATTAGAGACAAT-CCATTCCTTCGATCAATTTTTTGAATAATCCATGCTCGTGAAATCGAA
258 AAGTATTA-AGACGATACCATTCCTT-GAGCAA-TTTTTGAACAATCCATGCTCGTGAAATCGCA
* * * ** *
28526064 TCATTTGGTCCAAATAGTTTCTCATTTTTTAAACAAGTTTTACTCTTTGGATTAAAAACTTATTT
320 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
* * *
28526129 ACGTGAG-A---------TCTTGGTTCTTTGATGAACTTTCGAA-
385 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAT
* * *
28526163 CTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAATACGATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT-AAGACAATCCATTC
* * *
28526228 CTTCGAGCAATTTCCCGAACAA-TCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGT
65 CTTCGAGCAATTT-TCGAA-AATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * *
28526292 TATTTTGTAAATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * *
28526357 GGTTCTTGGACGAACTTTCGAACTAGACAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTTA
193 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * *
28526422 AAGTATTCAAGACAATA-CTTTCCCTCGAGCAATTTTTCGAACAATACTTGCTCGGGAAATCACA
258 AAGTATT-AAGACGATACCATT-CCTTGAGCAATTTTT-GAACAATCCATGCTCGTGAAATCGCA
* *
28526486 TCATTTGATCTAAATAG-TTGTCATTTTGTAAACAAGTTTAT-GTCTTTAAATTAAAAACTTATT
320 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT-TGGTCTTTGAATTAAAAACTTATT
* * * * *
28526549 TATGTGATAATTGTTTCTCTTTTGGTTCTTGGACGAACTTTCGAT
384 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAT
* * * *
28526594 CTTGTCAAACTTTTACGAGTTCTTTCATAAATTC-GATTCCTTAAAGTAATAGAGGCAATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAAAGTATTA-AGACAATCCATT
* * * * *
28526658 CCTTCGATCAATTTTTGAAATATTCCGTGCTTGTGAAATCGTATCATTTGGTCTAAATAGTTTGT
64 CCTTCGAGCAATTTTCGAAA-ATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * *
28526723 CATTTTGTAATCAAGTTTTGGTCTTTGGATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * *
28526788 GGTTCTTTGACGAACTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGTTTCCTTA
193 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
*
28526853 AAGCATTCAAGACGAT-CCATTCCTTTGAGCAATTTTTCGAACAATCCATGCTCAG-GAAATCGC
258 AAGTATT-AAGACGATACCATTCC-TTGAGCAATTTTT-GAACAATCCATGCTC-GTGAAATCGC
* * * *
28526916 ATCATTTGGTCTAAATAGTTTG-CTATTTTGTAGACAAGTTTTGGTGTTTGAATTAAGATCTTAT
319 ATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * *
28526980 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAATTTCTAAA
383 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAT
* * * * * * * *
28527026 CTTGTCAAACTTTTATGATTTATTTTCTAACTTCGGTTCCTTAAAGCATTCAAGA-AGATACTTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT-AAGACA-ATCCATT
* * ** * * *
28527090 CCCTCAAGCAATTTTTTAAACAATT-CATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTT
64 CCTTCGAGCAA-TTTTCGAA-AATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTG
* * *
28527154 TCATTTTGTAAACAAGTTTTGGTC-TTGAAATTAAAATCTTTTTTACGTGAGAGTTGTTTCTCTC
127 TCATTTTGTAAACAAGTTTTGGTCTTTG-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
*
28527218 TT-ATGTCTTGGACGAAC-TTCTGAACTTGTCAAACTTTTA-GAAGTTCTTTTATAACTTCGGTT
191 TTGGT-TCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACG-AGTTCTTTTATAACTTCGGTT
* * * * *
28527280 CCTTAAAGTATTAGAGGCAAT-CCATTCCTTCGATCAATTTTTGAA-ATATTTCATGCTTGTGAA
253 CCTTAAAGTATTA-AGACGATACCATTCCTT-GAGCAATTTTTGAACA-A-TCCATGCTCGTGAA
* * * * *
28527343 ATAGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACATGTTTTGGTGTTTGGATTAAAAAC
314 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
* * *
28527408 ATATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCGAA-
379 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AAT
* * * * * *
28527458 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATACTTTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT-AAGACAATCCATTC
* * * * * * * *
28527523 CCTCGAGTAATTTTTTGAACAA-TACTTGCTCGGGAAATCACATCATTTGATCTAAATAG-TTGT
65 CTTCGAGCAA-TTTTCGAA-AATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
28527586 CATTTTGTAAACAAGTTTTGGTCTTT-AAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * *
28527650 GGTTCTTGGACGAACTTTCGAACTTATCAAACTTTTAAGAGTTCTTTTATAACTTCGTTTCCTTA
193 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
** * * * * ** ** *
28527715 AAGTATTTAAGACGATACTTTTCGTCGAGCAATTTTTTAAACATTCTTTGCTCGAAAAATAGCAT
258 AAGTA-TTAAGACGATACCATTCCTTGAGCAA-TTTTTGAACAATCCATGCTCGTGAAATCGCAT
* *
28527780 CATTTGATCTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTA
321 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * *
28527844 CGTGAAAAATGTTTGTCTCTTGGTTCTTGGACAAACTTCCGAA-
386 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AAT
* * *
28527887 CTTGTCAAA-ATTTAAGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTAGAGACAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTA-AGACAATCCATTC
* * * * *
28527951 CTTAGATCAATTTTCTGAATAGTT-CATGCTCGTGAAATCGCATCATTTGGTCCAAATAGTTTCT
65 CTTCGAGCAATTTTC-GAA-AATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGT
* *
28528015 CATTTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
128 CA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * *
28528080 TGGTTCTTTGACGAACTTCCGAACTTATCAAACTTTTATGAGTTCTTTTATAACTTCAGTTCCTT
192 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * *
28528145 AAAGTATTCATGATGAT-CCATTCCTTCGAACAATTTTTGAACAATCCATGCTCGTGAAATCGCA
257 AAAGTATT-AAGACGATACCATTCCTT-GAGCAATTTTTGAACAATCCATGCTCGTGAAATCGCA
* *
28528209 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTT
320 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
* * **
28528274 ACGTGAGAATTATTTCTCTCTTGGTTCTTGGAGGAACTTTTGAA-
385 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAT
* * * ** * * *
28528318 CTTGTCAAACTTTTATGATTTCTTTTCTAACTTTGGTTCCTTAAAGTATTGAAGACGATACTTTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATT-AAGACAATCCATTC
* * *
28528383 CCTCGAGCAAGTTTTCGAACAA-TCCATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTGT
65 CTTCGAGCAA-TTTTCGAA-AATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * *
28528447 CATTTTGCATACAAGTTTTGGTGTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTT
128 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * *
28528512 GGTTCTTGGACAAACTTTCGAACTTATCAAAATTTTACGAGTTCTTTTATAACTTTGGTTCCTCA
193 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * * *
28528577 AAGTATTAGAGACAAT-CAATTCCTTCAATCAATTTTCCGAATAGTCCATACTCGTGAAATCGCA
258 AAGTATTA-AGACGATACCATTCCTT-GAGCAATTTT-TGAACAATCCATGCTCGTGAAATCGCA
* * * *
28528641 TCATTTGGTCCAAATAGTTTCTCATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTT
320 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
28528706 ACGTGAGAATTGTTTCTCTCTTGGTTCTT
385 ACGTGAGAATTGTTTCTCTCTTGGTTCTT
28528735 TGATTGATAC
Statistics
Matches: 3943, Mismatches: 597, Indels: 301
0.81 0.12 0.06
Matches are distributed among these distances:
411 4 0.00
412 228 0.06
413 10 0.00
414 1 0.00
415 3 0.00
417 62 0.02
418 33 0.01
419 3 0.00
420 2 0.00
421 100 0.03
422 291 0.07
423 8 0.00
424 3 0.00
425 5 0.00
426 42 0.01
427 311 0.08
428 170 0.04
429 138 0.03
430 327 0.08
431 1139 0.29
432 1023 0.26
433 38 0.01
434 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (428 bp):
CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTAAGACAATCCATTCC
TTCGAGCAATTTTCGAAAATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
TCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
TATTAAGACGATACCATTCCTTGAGCAATTTTTGAACAATCCATGCTCGTGAAATCGCATCATTT
GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAT
Found at i:28538679 original size:30 final size:30
Alignment explanation
Indices: 28538624--28538695 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
28538614 GGGCTTGGAA
* * *
28538624 GTTGCGAGCACTGGTGTTGCAAGCACTCAT
1 GTTGCGAACACTGGAGCTGCAAGCACTCAT
* *
28538654 -TATGCGAACACTGGAGCTGCGAGCACTGAT
1 GT-TGCGAACACTGGAGCTGCAAGCACTCAT
28538684 GTTGCGAACACT
1 GTTGCGAACACT
28538696 CGAGTTGTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 1 0.03
30 33 0.94
31 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (30 bp):
GTTGCGAACACTGGAGCTGCAAGCACTCAT
Found at i:28546080 original size:216 final size:215
Alignment explanation
Indices: 28545580--28550469 Score: 4318
Period size: 216 Copynumber: 22.9 Consensus size: 215
28545570 CTCTTGGTTC
* *
28545580 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAG---T---A-GATCCATTCC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTAAGACGATCCATTCC
* * * *
28545638 TTCGAGCAATTTTTTGAACATTTCATTCTCA-GGAAATCACATCATTTGGTCTAAA-CAGTTTGT
66 TTCGAGCAATTTTTCGAAAATTCCATGCT-AGGGAAATCACATCATTTGGTCTAAATC-GTTTGT
* * * *
28545701 TATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTATTTACGTGAGAA-T-TCTCTCTCTT
129 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
** *
28545764 AATTCTTGGACGAACTTTCGAA
194 GGTTCTTGGACGAACTTTCGAT
* *
28545786 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTTAAGACGATCCAAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTA-TTAAGACGATCCATT
* * * *
28545850 CCTTCAAGCAATTTTTCGAAGATTCCATGCAAGGGAAATCGCATCATTTGGTCTAAATCGTTTGT
64 CCTTCGAGCAATTTTTCGAAAATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGT
** * * *
28545915 CATTTTGTAAACAACATTCGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTTTT
129 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
28545980 GGTTCTTGGACGAACTTTCGAT
194 GGTTCTTGGACGAACTTTCGAT
* ** * *
28546002 CTTGTCAAACTGTTACGAGTTCTTTTATAACTTCGATTTATTAAAGTATTCAAGATGACCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AAGACGATCCATTC
* * * * * * * *
28546067 CTTCGATCAATTTTTCGAATATTCCATGCTCGTGAAACCACATCATTTGGTCGAAATAGTTTCTC
65 CTTCGAGCAATTTTTCGAAAATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGTC
* *
28546132 ATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
130 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
* *
28546197 GTTCTTAGACAAAC--T---T
195 GTTCTTGGACGAACTTTCGAT
*
28546213 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTAGAGACAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTA-AGACGATCCATTC
* * * * * *
28546278 CTTCGATCAATTTTTTGAAAAGTCCATGCTCGTGATATCGA-ATCATTT-GTCTAAA--------
65 CTTCGAGCAATTTTTCGAAAATTCCATGCTAGGGAAATC-ACATCATTTGGTCTAAATCGTTTGT
* * * *
28546333 C--TTT-T--ACGAGTTTTGGTCTTTGGATTAAAAA-TCTATTTACGTGAGAATTGTTTCTCTCT
129 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTTACATGAGAATTATTTCTCTCT
*
28546392 TGGTTCTTTGACG-A------A-
193 TGGTTCTTGGACGAACTTTCGAT
** * * * * * *
28546407 C---T--AA-TTTTACGAGTTCTTTTATAACTTCAGTTCT-TTA-AAGTATTCAATATGATCTAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGAT-TCCTTAAAGTATT-AAGACGATCCAT
** ** * *
28546464 TCCTTCGAGCAATTTCCCGAACAA-TCCATGCTTA-GGAAATCGTATCATATGGTCTAAATAGTT
63 TCCTTCGAGCAATTTTTCGAA-AATTCCATGC-TAGGGAAATCACATCATTTGGTCTAAATCGTT
* * * * * * * *
28546527 TGCCATTTTGTAAATAAGTTTTGGTGTTGGAATTAAAATCTTATTTACGTGAGAATTGTTTCCCT
126 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCT
*
28546592 CTTGGTTCTTGGACGAACTTTCGAA
191 CTTGGTTCTTGGACGAACTTTCGAT
* * * * **
28546617 CTTGTCAAAATTTTACGATTTCTATTATAACTTCGGTTCCTTAAAGTATTTAAGACGATACTTTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTA-TTAAGACGAT-CCATT
* * * * * * *
28546682 CC-TCGAGCAAATTTTT--AAACAATACTTGCT-CGGAAATCGCATCATTTGATCTAAATAGTTT
64 CCTTCGAGC-AATTTTTCGAAA-ATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTT
* * * * * *
28546743 GCCATTTTATAAACAAG-TTTGCTCTTTAAATTAAAAACTTATTTACGTGAAAATTATTTCTCTC
127 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* * *
28546807 TTGATTCTTGGACGAACTTCCAAT
192 TTGGTTCTTGGACGAACTTTCGAT
* * * *
28546831 CTTTTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTTTTAGAGTCAATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTA-AGACGATCCATT
* * * ** * * *
28546895 CCTTCGATCAA-TTTTCGAAATATTCCATGCTCGTGAAATCGTACCATTTAGTCTAAATAGTTTT
64 CCTTCGAGCAATTTTTCGAAA-ATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCG-TTT
* * * * *
28546959 TTTATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTC
127 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* ** * *
28547024 TCGGTTCTTTTAC-AAGTTTTCGAA
192 TTGGTTCTTGGACGAA-CTTTCGAT
* * * * **
28547048 ATTGTCAAACTTTTACGATTTCTTTTCTAACTTCGGTTCCTTAAAGTATTCAAGACGATACTTTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AAGACGAT-CCATT
* ** * *
28547113 CCTT-GAGCAATTTTTCGAACAA-TCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTT
64 CCTTCGAGCAATTTTTCGAA-AATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTG
* * * *
28547176 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
128 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
*
28547241 TGGTTCTTAGACGAACTTTCGAAT
193 TGGTTCTTGGACGAACTTTCG-AT
* * * * *
28547265 -TTGTCAAACTTTTACGAGTTC-TTTAT-AC--C-AGTTCCTTGAAGTATTCAAAATGATACTTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATT-AAGACGATCCATT
* * * * * * * ** *
28547324 CCTTCGAGCAATTTTTCAAAAAATCCTTACTCGGAAAATCGCATCATTTCATCTAAATAG-TTGT
64 CCTTCGAGCAATTTTTCGAAAATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGT
* * * * * *
28547388 CATTTTGTAAACAAGTTTTGTTCTTTAAATTAAAAACATATTTGCGTGAGAATTGTTTCTCTCTT
129 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
* * *
28547453 GATTCTTGGACGAACTTCCAAT
194 GGTTCTTGGACGAACTTTCGAT
* *
28547475 CTTTTCAAACTTTTACGAGTTC-TTTATAACTTC-AGTTCCTTAAAGTATTAGAGACAATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTA-AGACGATCCATT
* * * ** * *
28547538 CCATCGATG-GATTTTT-GAAATATTCCATGCTCGTAAAATCGCATCATTTGGTCTAAATAGTTT
64 CCTTCGA-GCAATTTTTCGAAA-ATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTT
* * * * *
28547601 GTCATTTTTTAAA-AATGTTTTTGTCTTTGGATTAAAAACTTATTTACGTAAGAATTATTTCTCT
127 GTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCT
* * *
28547665 CTTGGTTCTTAGACGAAGTTTTGAT
191 CTTGGTTCTTGGACGAACTTTCGAT
* * * *
28547690 CTTGTCAAACTTTTACAAGTTCTTTTATAACTT-GAGTTCATTAAAGAATTCAAGACGATTCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATT-AAGACGATCCATT
* * * * * * ** * * * *
28547754 CATTCGATCAATTTTTCGAATATCCCATGTTCGTAAAATCGCATCATTTGGTTTAAATAGTTTCT
64 CCTTCGAGCAATTTTTCGAAAATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGT
* ** * * * * *
28547819 CACTTTTTTAAA-AAAATTTGGTCTTTGGATTAAAACCTTTTTTACGTGAGAATTATTTCTATCT
129 CA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* *
28547883 TGGTTCTTAGACGAACTTTCGAA
193 TGGTTCTTGGACGAACTTTCGAT
* * * *
28547906 CTTGTCAAACTTTTAAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAGAGACAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTA-AGACGATCCATTC
* * * * * *
28547971 CTTCGATCAATTTTTCGAATAA-TCCATGCTCGTGAAATCGA-ATCATTTGGTCCAAATAGTTTC
65 CTTCGAGCAATTTTTCGAA-AATTCCATGCTAGGGAAATC-ACATCATTTGGTCTAAATCGTTTG
* ** * *
28548034 TCATTTTTTAAACAAGTTTTACTCTTTGGATTAAAAACTTATTTACGTGAG----A------TCT
128 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* ** * * *
28548089 TGGTCCTTTCATGAACTTCCGAA
193 TGGTTCTTGGACGAACTTTCGAT
* *
28548112 CTTGTCAAACTTTTACAAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCAATACGATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATT-AAGACGATCCATT
** * * ** *
28548176 CCTTCGAGCAATTTCCCGAACAA-TCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTG
64 CCTTCGAGCAATTTTTCGAA-AATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTG
* * * * *
28548240 TTATTTTGTAAATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACAAGAGAATTATTTCTCTCT
128 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
*
28548305 TGGTTCTTGGACGAACTTTCGAA
193 TGGTTCTTGGACGAACTTTCGAT
* * * * * * *
28548328 CTAGACAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATACTTTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AAGACGATCCATTC
* * * * * * * *
28548393 CCTCGAGCAATTTTTCGAACAA-TACTTGCTCGGGAAATCACTTAATTTGATCTAAATAG-TTGT
65 CTTCGAGCAATTTTTCGAA-AATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGT
* ** * *
28548456 CATTTTGTAAACAAGTTTAT-GTCTTTAAATTAAAAACTTATTTATGTGATAATTGTTTCTCTCT
129 CATTTTGTAAACAAGTTT-TGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
28548520 TGGTTCTTGGACGAACTTTCGAT
193 TGGTTCTTGGACGAACTTTCGAT
* * * * *
28548543 CTTGTCAAACTTTTACGAGTTCTTTCATAAATTCGATTCCTTAAAGTAATAGAGGCAATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTA-AGACGATCCATTC
* * * * * * *
28548608 CTTCGATCAATTTTT-GAAATATTTCGTGCTTGTGAAATCGCATCATTTGGTCTAAATAGTTTGT
65 CTTCGAGCAATTTTTCGAAA-ATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGT
* * * * *
28548672 CATTTTGTAATCAAGTTTTGGTCTTTGGATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCTT
129 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
* * * * *
28548737 GGTTCTTTGATGAACTTCCAAA
194 GGTTCTTGGACGAACTTTCGAT
* * *
28548759 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGTTTCCTTAAAGCATTCAAGACGATCCATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AAGACGATCCATTC
* * * *
28548824 CTTTGAGCAATTTTTCGAACAA-TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
65 CTTCGAGCAATTTTTCGAA-AATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGT
* ** * * * ** * *
28548888 TATTTTGTAGGCAAGTTTTGGTGTTTGAATTAAGATCTTATTTATGTGAGAATTGTTTCTCTGTT
129 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
*
28548953 GGTTCTTGGACGAAC-TTCTGAA
194 GGTTCTTGGACGAACTTTC-GAT
* * * *
28548975 CTTGTCAAACTTTTA-GAAGTTCTTTTATAACTTCGGTTTCTTAAAGTATTAGAGGCAATCCATT
1 CTTGTCAAACTTTTACG-AGTTCTTTTATAACTTCGATTCCTTAAAGTATTA-AGACGATCCATT
* * * * *
28549039 CCTTCGATCAATTTTT-GAAATATTTCATGCTTGTGAAAT-AGCATCATTTGGTCTAAATAGTTT
64 CCTTCGAGCAATTTTTCGAAA-ATTCCATGCTAGGGAAATCA-CATCATTTGGTCTAAATCGTTT
* * * * * * * * *
28549102 GTCATTTTTTAAACATGTTTTGGTGTTTGGATTAAGAACATATTTACGTAAGAATTGTTTCTCTC
127 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* * * *
28549167 TTGGTTCTTTGACAAACTTCCGAA
192 TTGGTTCTTGGACGAACTTTCGAT
* * * * *
28549191 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATACTTTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AAGACGATCCATTC
* * * * * * * *
28549256 CCTCGAGCAATTTTTC-AAACAATACTTGCTCGGGAAATCGCATCATTTGATCTAAATAG-TTGT
65 CTTCGAGCAATTTTTCGAAA-ATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGT
* * * *
28549319 CATTTTGTAAACAAGTTTTGGTCTTTAAATAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
129 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
*
28549384 GGTTCTTGGACGAACTTTCGAA
194 GGTTCTTGGACGAACTTTCGAT
* * * * * *
28549406 CTTATCAAACTTTTAAGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTTAAGACGATACTTTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTA-TTAAGACGATCCATTC
* * * ** ** * *
28549471 CGTCGAGCAATTTTTTGAACATTCTTTGCTCA-AAAAAT-AGCATCATTTGATCTAAATAG-TTG
65 CTTCGAGCAATTTTTCGAAAATTCCATGCT-AGGGAAATCA-CATCATTTGGTCTAAATCGTTTG
* * * * * * *
28549533 TCATTTTGTAAACAATTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAAATGTTTGTCTCT
128 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* * *
28549598 TGGTTCTTGGACAAACTTCCGAA
193 TGGTTCTTGGACGAACTTTCGAT
* * * *
28549621 CTTGTCAAA-ATTTAAGGGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTAGAGACAATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTA-AGACGATCCATT
* * * * * * * * * *
28549684 CCTTAGATCAATTTTCCGAATAGTT-CATGCTCGTGAAATCGCATCATTTGGTCCAAATAGTTTC
64 CCTTCGAGCAATTTTTCGAA-AATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTG
* * ** *
28549748 TCATTTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGCGAGAATTGTTTCTCTC
128 TCA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* * *
28549813 TTGGTTCTTTGACGAACTTCCGAA
192 TTGGTTCTTGGACGAACTTTCGAT
* * * *
28549837 CTTATCAAACTTTTATGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCATGATGATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATT-AAGACGATCCATT
* * * * *
28549901 CCTTCGAACAATTTTT-GAACAA-TCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTG
64 CCTTCGAGCAATTTTTCGAA-AATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTG
* * * *
28549964 TCATTTTGTAAACAAGTTTTGGTGTTTGAATGAAAATCTTATTTACGTGAGAATTATTTCTCTCT
128 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCT
* * *
28550029 TGGTTCTTGGAGGAACTTCCGAA
193 TGGTTCTTGGACGAACTTTCGAT
* * * * * * * *
28550052 CTAGTCAAACTTTTATGATTTCTTTTCTAACTTTGGTTCCTTAAAGTATTGAAGACGATAC-TTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AAGACGATCCATTC
* * * *
28550116 CTCTCGAGC-ATGTTTTCGAACAA-TCCATGCTCGGGAGATCGCATCATTTGGTCTAAATAGTTT
65 CT-TCGAGCAAT-TTTTCGAA-AATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTT
* * * * * * *
28550179 GTCATTTTGCATACAAGTTTTGGTGTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTC
127 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
* * *
28550244 TTGGTTCTTGGACAAAACTTTCAAA
192 TTGGTTCTTGGAC-GAACTTTCGAT
* * * * * * *
28550269 CTTGTCAAATTTTTATGAGTTCTTTTATAACTTTGGTTCCTCAAAGTATTAGAGACAATCAATTC
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTA-AGACGATCCATTC
* * * * * * ** * * *
28550334 CTTCAATCAA-TTTTCCAAATAGTCCATGCTCGTGAAATCGTATCATTTGGTCCAAATAGTTTTT
65 CTTCGAGCAATTTTTCGAAA-ATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGT
* * * *
28550398 CATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
129 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
28550463 GGTTCTT
194 GGTTCTT
28550470 TGATTGATAC
Statistics
Matches: 3933, Mismatches: 590, Indels: 311
0.81 0.12 0.06
Matches are distributed among these distances:
188 70 0.02
189 17 0.00
190 1 0.00
191 1 0.00
194 1 0.00
196 2 0.00
197 61 0.02
199 4 0.00
200 4 0.00
202 58 0.01
203 2 0.00
206 216 0.05
207 2 0.00
209 1 0.00
210 12 0.00
211 211 0.05
212 74 0.02
213 21 0.01
214 395 0.10
215 785 0.20
216 1563 0.40
217 407 0.10
218 24 0.01
219 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (215 bp):
CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTAAGACGATCCATTCC
TTCGAGCAATTTTTCGAAAATTCCATGCTAGGGAAATCACATCATTTGGTCTAAATCGTTTGTCA
TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGG
TTCTTGGACGAACTTTCGAT
Found at i:28548621 original size:215 final size:216
Alignment explanation
Indices: 28546411--28550469 Score: 4505
Period size: 216 Copynumber: 18.9 Consensus size: 216
28546401 GACGAACTAA
* * * ** *
28546411 TTTTACGAGTTCTTTTATAACTTCAGTTCTTTAAAGTATTCA-ATATGATCTATTCCTTCGAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGAGCA
** * * * *
28546475 ATTTCCCGAACAATCCATGCTTAG-GAAATCGTATCATATGGTCTAAATAGTTTGCCATTTTGTA
65 ATTTTTCGAACAATCCATGC-TCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
28546539 AATAAGTTTTGGTGTTGGAATTAAAATCTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGG
129 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
28546604 ACGAACTTTCGAACTTGTCAAAA
194 ACGAACTTTCGAACTTGTCAAAC
* * * **
28546627 TTTTACGATTTCTATTATAACTTCGGTTCCTTAAAGTATTTA-AGACGATACTTTTCC-TCGAGC
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTAGAGACAAT-CCATTCCTTCGAGC
* * * * * *
28546690 AAATTTTT-AAACAATACTTGCTCG-GAAATCGCATCATTTGATCTAAATAGTTTGCCATTTTAT
64 -AATTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
28546753 AAACAAG-TTTGCTCTTTAAATTAAAAACTTATTTACGTGAAAATTATTTCTCTCTTGATTCTTG
128 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
28546817 GACGAAC-TTCCAATCTTTTCAAAC
193 GACGAACTTTCGAA-CTTGTCAAAC
* * * *
28546841 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTTTTAGAGTCAATCCATTCCTTCGATCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGAGCAA
* * * * * *
28546906 -TTTTCGAA-ATATTCCATGCTCGTGAAATCGTACCATTTAGTCTAAATAGTTTTTTTATTTTTT
66 TTTTTCGAACA-A-TCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGT
* * * *
28546969 AAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTCGGTTCTTT
128 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
28547034 TAC-AAGTTTTCGAAATTGTCAAAC
193 GACGAA-CTTTCGAACTTGTCAAAC
* * * **
28547058 TTTTACGATTTCTTTTCTAACTTCGGTTCCTTAAAGTATTCA-AGACGATACTTTTCCTT-GAGC
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAAT-CCATTCCTTCGAGC
* * *
28547121 AATTTTTCGAACAATCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTA
64 AATTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
28547186 AACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAG
129 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
28547251 ACGAACTTTCGAATTTGTCAAAC
194 ACGAACTTTCGAACTTGTCAAAC
* * * ** * *
28547274 TTTTACGAGTTC-TTTAT-AC--CAGTTCCTTGAAGTATTCA-AAATGATACTTTCCTTCGAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGAGCA
* * * * **
28547334 ATTTTTCAAAAAATCCTTACTCG-GAAAATCGCATCATTTCATCTAAATAG-TTGTCATTTTGTA
65 ATTTTTCGAACAATCCATGCTCGTG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
28547397 AACAAGTTTTGTTCTTTAAATTAAAAACATATTTGCGTGAGAATTGTTTCTCTCTTGATTCTTGG
129 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* *
28547462 ACGAAC-TTCCAATCTTTTCAAAC
194 ACGAACTTTCGAA-CTTGTCAAAC
* * *
28547485 TTTTACGAGTTC-TTTATAACTTCAGTTCCTTAAAGTATTAGAGACAATCCATTCCATCGATG-G
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGA-GCA
* *
28547548 ATTTTT-GAA-ATATTCCATGCTCGTAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTT
65 ATTTTTCGAACA-A-TCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
28547611 AAA-AATGTTTTTGTCTTTGGATTAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTT
128 AAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
28547675 AGACGAAGTTTTGATCTTGTCAAAC
192 GGACGAACTTTCGAACTTGTCAAAC
* * * * * * *
28547700 TTTTACAAGTTCTTTTATAACTT-GAGTTCATTAAAGAATTCA-AGACGATTCATTCATTCGATC
1 TTTTACGAGTTCTTTTATAACTTCG-GTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGAGC
* * * * * *
28547763 AATTTTTCGAA-TATCCCATGTTCGTAAAATCGCATCATTTGGTTTAAATAGTTTCTCACTTTTT
64 AATTTTTCGAACAAT-CCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTG
** * * * * *
28547827 TAAA-AAAATTTGGTCTTTGGATTAAAACCTTTTTTACGTGAGAATTATTTCTATCTTGGTTCTT
127 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
*
28547891 AGACGAACTTTCGAACTTGTCAAAC
192 GGACGAACTTTCGAACTTGTCAAAC
* * *
28547916 TTTTAAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGATCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGAGCAA
* * * * *
28547981 TTTTTCGAATAATCCATGCTCGTGAAATCGAATCATTTGGTCCAAATAGTTTCTCATTTTTTAAA
66 TTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
** * * ** *
28548046 CAAGTTTTACTCTTTGGATTAAAAACTTATTTACGTGAG-A---------TCTTGGTCCTTTCAT
131 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
*
28548101 GAACTTCCGAACTTGTCAAAC
196 GAACTTTCGAACTTGTCAAAC
* * * *
28548122 TTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCA-ATACGATCCATTCCTTCGAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGAGCA
** * * *
28548186 ATTTCCCGAACAATCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTTATTTTGTAA
65 ATTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * ** *
28548251 ATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACAAGAGAATTATTTCTCTCTTGGTTCTTGGA
130 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
28548316 CGAACTTTCGAACTAGACAAAC
195 CGAACTTTCGAACTTGTCAAAC
* * * *
28548338 TTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACAATACTTTCCCTCGAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGAGCA
* * * * * * *
28548402 ATTTTTCGAACAATACTTGCTCGGGAAATCACTTAATTTGATCTAAATAG-TTGTCATTTTGTAA
65 ATTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
28548466 ACAAGTTTAT-GTCTTTAAATTAAAAACTTATTTATGTGATAATTGTTTCTCTCTTGGTTCTTGG
130 ACAAGTTT-TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
28548530 ACGAACTTTCGATCTTGTCAAAC
194 ACGAACTTTCGAACTTGTCAAAC
* * * * * *
28548553 TTTTACGAGTTCTTTCATAAATTCGATTCCTTAAAGTAATAGAGGCAATCCATTCCTTCGATCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGAGCAA
* * *
28548618 TTTTT-GAA-ATATTTCGTGCTTGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
66 TTTTTCGAACA-A-TCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * *
28548681 ATCAAGTTTTGGTCTTTGGATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTG
129 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
28548746 ATGAACTTCCAAACTTGTCAAAC
194 ACGAACTTTCGAACTTGTCAAAC
* * * * *
28548769 TTTTATGAGTTCTTTTATAACTTCGTTTCCTTAAAGCATTCA-AGACGATCCATTCCTTTGAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGAGCA
* * *
28548833 ATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAG
65 ATTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
28548898 GCAAGTTTTGGTGTTTGAATTAAGATCTTATTTATGTGAGAATTGTTTCTCTGTTGGTTCTTGGA
130 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
28548963 CGAAC-TTCTGAACTTGTCAAAC
195 CGAACTTTC-GAACTTGTCAAAC
* * *
28548985 TTTTA-GAAGTTCTTTTATAACTTCGGTTTCTTAAAGTATTAGAGGCAATCCATTCCTTCGATCA
1 TTTTACG-AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGAGCA
* * * *
28549049 ATTTTT-GAA-ATATTTCATGCTTGTGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTTT
65 ATTTTTCGAACA-A-TCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * *
28549112 AAACATGTTTTGGTGTTTGGATTAAGAACATATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTT
128 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
28549177 GACAAACTTCCGAACTTGTCAAAC
193 GACGAACTTTCGAACTTGTCAAAC
* * * * * *
28549201 TTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAATATTCA-AGACGATACTTTCCCTCGAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGAGCA
* * * * *
28549265 ATTTTTCAAACAATACTTGCTCGGGAAATCGCATCATTTGATCTAAATAG-TTGTCATTTTGTAA
65 ATTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
28549329 ACAAGTTTTGGTCTTTAAATAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
130 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
*
28549394 CGAACTTTCGAACTTATCAAAC
195 CGAACTTTCGAACTTGTCAAAC
* * * * * * *
28549416 TTTTAAGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTTA-AGACGATACTTTTCGTCGAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTAGAGACAATCCATTCCTTCGAGCA
* * ** *** * *
28549480 ATTTTTTGAACATTCTTTGCTCAAAAAATAGCATCATTTGATCTAAATAG-TTGTCATTTTGTAA
65 ATTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
28549544 ACAATTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAAATGTTTGTCTCTTGGTTCTTGGA
130 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
28549609 CAAACTTCCGAACTTGTCAAA-
195 CGAACTTTCGAACTTGTCAAAC
* * * * * *
28549630 ATTTAAGGGTTCTTTTATAACTTCTGTTCCTTAAAGTATTAGAGACAATCCATTCCTTAGATCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGAGCAA
* * * * * * *
28549695 TTTTCCGAATAGTTCATGCTCGTGAAATCGCATCATTTGGTCCAAATAGTTTCTCATTTTTTTAA
66 TTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAA
* * *
28549760 ACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTTGA
130 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
28549825 CGAACTTCCGAACTTATCAAAC
195 CGAACTTTCGAACTTGTCAAAC
* * * ** *
28549847 TTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCA-TGATGATCCATTCCTTCGAACA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGAGCA
28549911 ATTTTT-GAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
65 ATTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
28549975 ACAAGTTTTGGTGTTTGAATGAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGA
130 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * *
28550040 GGAACTTCCGAACTAGTCAAAC
195 CGAACTTTCGAACTTGTCAAAC
* * * * * * *
28550062 TTTTATGATTTCTTTTCTAACTTTGGTTCCTTAAAGTATT-GAAGACGATAC-TTTCTCTCGAGC
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAG-AGACAATCCATTCCT-TCGAGC
* * *
28550125 -ATGTTTTCGAACAATCCATGCTCGGGAGATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGC
64 AAT-TTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
28550189 ATACAAGTTTTGGTGTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
128 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
28550254 GACAAAACTTTCAAACTTGTCAAAT
193 GAC-GAACTTTCGAACTTGTCAAAC
* * * * * *
28550279 TTTTATGAGTTCTTTTATAACTTTGGTTCCTCAAAGTATTAGAGACAATCAATTCCTTCAATCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGAGCAA
* * * * * * * *
28550344 TTTTCCAAATAGTCCATGCTCGTGAAATCGTATCATTTGGTCCAAATAGTTTTTCATTTTTTAAA
66 TTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
28550409 CAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
131 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
28550470 TGATTGATAC
Statistics
Matches: 3259, Mismatches: 495, Indels: 177
0.83 0.13 0.05
Matches are distributed among these distances:
206 174 0.05
207 2 0.00
210 5 0.00
211 108 0.03
212 76 0.02
213 26 0.01
214 283 0.09
215 769 0.24
216 1368 0.42
217 415 0.13
218 32 0.01
219 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (216 bp):
TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAGAGACAATCCATTCCTTCGAGCAA
TTTTTCGAACAATCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
GAACTTTCGAACTTGTCAAAC
Found at i:28548706 original size:431 final size:432
Alignment explanation
Indices: 28545580--28550469 Score: 5264
Period size: 431 Copynumber: 11.5 Consensus size: 432
28545570 CTCTTGGTTC
*
28545580 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCG-GTTCCTTAAAG---T---A-G-ATCCATT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGCATCCATT
* * * *
28545636 CCTTCGAGCAATTTTTTGAACAT-TT-CATTCTCAG-GAAATCACATCATTTGGTCTAAACAGTT
66 CCTTCGATCAA-TTTTTGAA-ATATTCCATGCTC-GTGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
28545698 TGTTATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTATTTACGTGAGAA-T-TCTCTCT
128 TGTCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
** * *
28545761 CTTAATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCTGTTCC
193 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * **
28545826 TTAAAGTATTTAAGACGATCCAATCCTTCAAGCAATTTTTCGAAGATTCCATGCAAGGGAAATCG
258 TTAAAGTA-TTAAGACGATCCATTCCCTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCG
* ** * *
28545891 CATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACATTCGGTCTTTGAATTAAAATCTTAT
322 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * *
28545956 TTACATGAGAATTATTTCTCTTTTGGTTCTTGGACGAACTTTCGAT
387 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* ** * *
28546002 CTTGTCAAACTGTTACGAGTTCTTTTATAACTTCGA-TTTATTAAAGTATTCAAGATG-ACCCAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTC-AGAGGCATCCAT
* * *
28546065 TCCTTCGATCAATTTTTCG-AATATTCCATGCTCGTGAAACCACATCATTTGGTCGAAATAGTTT
65 TCCTTCGATCAATTTTT-GAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
28546129 CTCATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACATGAGAATTATTTCTCTC
129 GTCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * *
28546194 TTGGTTCTTAGACAAAC-TT----CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCT
194 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * *
28546254 TAAAGTATTAGAGACAATCCATTCCTTCGATCAATTTTTTGAA-AAGTCCATGCTCGTGATATCG
259 TAAAGTATTA-AGACGATCCATTCCCTCGAGCAATTTTTCGAACAA-TCCATGCTCGGGAAATCG
* * *
28546318 AATCATTT-GTCT-AA-A------C--TTT-T--ACGAGTTTTGGTCTTTGGATTAAAAA-TCTA
322 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TA
*
28546368 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTT---TG-A----CGAA
386 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* * * *
28546407 C---T--AA-TTTTACGAGTTCTTTTATAACTTC-AGTTCTTTAAAGTATTCAATATG-ATCTAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTC-AGAGGCATCCAT
* ** * * *
28546464 TCCTTCGAGCAATTTCCCGAACA-A-TCCATGCTTAG-GAAATCGTATCATATGGTCTAAATAGT
65 TCCTTCGATCAATTT-TTGAA-ATATTCCATGC-TCGTGAAATCGCATCATTTGGTCTAAATAGT
* * * * *
28546526 TTGCCATTTTGTAAATAAGTTTTGGT-GTTGGAATTAAAATCTTATTTACGTGAGAATTGTTTCC
127 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGG-ATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * *
28546590 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAATTTTACGATTTCTATTATAACTTCGGTT
191 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * *
28546655 CCTTAAAGTATTTAAGACGATACTTTTCCTCGAGCAAATTTTT-AAACAATACTTGCTC-GGAAA
256 CCTTAAAGTA-TTAAGACGATCCATTCCCTCGAGC-AATTTTTCGAACAATCCATGCTCGGGAAA
* * * * *
28546718 TCGCATCATTTGATCTAAATAGTTTGCCATTTTATAAACAAG-TTTGCTCTTTAAATTAAAAACT
319 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * *
28546782 TATTTACGTGAAAATTATTTCTCTCTTGATTCTTGGACGAAC-TTCCAA
384 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* * *
28546830 TCTTTTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGT-TTTAGAGTCAATCCA
1 -CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGC-ATCCA
* * * *
28546893 TTCCTTCGATCAATTTTCGAAATATTCCATGCTCGTGAAATCGTACCATTTAGTCTAAATAGTTT
64 TTCCTTCGATCAATTTTTGAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAG-TT
* * * *
28546958 TTTTATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCT
128 TGTCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* ** * * * *
28547023 CTCGGTTCTTTTAC-AAGTTTTCGAAATTGTCAAACTTTTACGATTTCTTTTCTAACTTCGGTTC
193 CTTGGTTCTTGGACGAA-CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * *
28547087 CTTAAAGTATTCAAGACGATACTTTTCCTTGAGCAATTTTTCGAACAATCCATGCTCGGGAAATC
257 CTTAAAGTATT-AAGACGATCCATTCCCTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATC
* * * *
28547152 GTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTA
321 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
*
28547217 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTTCGAA
386 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* * * * * *
28547264 TTTGTCAAACTTTTACGAGTTC-TTTAT-AC--C-AGTTCCTTGAAGTATTCAAAATG-ATACTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTC-AGAGGCATCCAT
* * * * * * **
28547323 TCCTTCGAGCAATTTTTCAAAAAATCCTTACTCG-GAAAATCGCATCATTTCATCTAAATAG-TT
65 TCCTTCGATCAATTTTTGAAATATTCCATGCTCGTG-AAATCGCATCATTTGGTCTAAATAGTTT
* ** * *
28547386 GTCATTTTGTAAACAAGTTTTGTTCTTTAAATTAAAAACATATTTGCGTGAGAATTGTTTCTCTC
129 GTCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * *
28547451 TTGATTCTTGGACGAAC-TTCCAATCTTTTCAAACTTTTACGAGTTC-TTTATAACTTCAGTTCC
194 TTGGTTCTTGGACGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * **
28547514 TTAAAGTATTAGAGACAATCCATTCCATCGATG-GATTTTT-GAA-ATATTCCATGCTCGTAAAA
258 TTAAAGTATTA-AGACGATCCATTCCCTCGA-GCAATTTTTCGAACA-A-TCCATGCTCGGGAAA
* * *
28547576 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAA-AATGTTTTTGTCTTTGGATTAAAAAC
319 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAAC
* * * * * *
28547640 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTAGACGAAGTTTTGAT
383 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* * * * *
28547690 CTTGTCAAACTTTTACAAGTTCTTTTATAACTT-GAGTTCATTAAAGAATTCA-AGACGATTCAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGC-ATCCAT
* * * * *
28547753 TCATTCGATCAATTTTTCG-AATATCCCATGTTCGTAAAATCGCATCATTTGGTTTAAATAGTTT
65 TCCTTCGATCAATTTTT-GAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT
* * ** * * * *
28547817 CTCACTTTTTTAAA-AAAATTTGGTCTTTGGATTAAAACCTTTTTTACGTGAGAATTATTTCTAT
129 GTCA-TTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
28547881 CTTGGTTCTTAGACGAACTTTCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTTGGTTCC
193 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * *
28547946 TTAAAGTATTAGAGACAATCCATTCCTTCGATCAATTTTTCGAATAATCCATGCTCGTGAAATCG
258 TTAAAGTATTA-AGACGATCCATTCCCTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCG
* * * * ** *
28548011 AATCATTTGGTCCAAATAGTTTCTCATTTTTTAAACAAGTTTTACTCTTTGGATTAAAAACTTAT
322 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* ** * *
28548076 TTACGTGAG-A---------TCTTGGTCCTTTCATGAACTTCCGAA
387 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* **
28548112 CTTGTCAAACTTTTACAAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCA-ATACGATCCAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGC-ATCCAT
* ** * *
28548175 TCCTTCGAGCAATTTCCCGAACA-A-TCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTT
65 TCCTTCGATCAATTT-TTGAA-ATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * ** *
28548238 TGTTATTTTGTAAATAAGTTTTGGTGTTTGAATTAAAATCTTATTTACAAGAGAATTATTTCTCT
128 TGTCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
28548303 CTTGGTTCTTGGACGAACTTTCGAACTAGACAAACTTTTACGATTTCTTTTATAACTTCGGTTCC
193 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * *
28548368 TTAAAGTATTCAAGACAATACTTTCCCTCGAGCAATTTTTCGAACAATACTTGCTCGGGAAATCA
258 TTAAAGTATT-AAGACGATCCATTCCCTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCG
* * * *
28548433 CTTAATTTGATCTAAATAG-TTGTCATTTTGTAAACAAGTTTAT-GTCTTTAAATTAAAAACTTA
322 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT-TGGTCTTTGAATTAAAAACTTA
* * *
28548496 TTTATGTGATAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAT
386 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* * *
28548543 CTTGTCAAACTTTTACGAGTTCTTTCATAAATTCGA-TTCCTTAAAGTAAT-AGAGGCAATCCAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGC-ATCCAT
* * *
28548606 TCCTTCGATCAATTTTTGAAATATTTCGTGCTTGTGAAATCGCATCATTTGGTCTAAATAGTTTG
65 TCCTTCGATCAATTTTTGAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
28548671 TCATTTTGTAATCAAGTTTTGGTCTTTGGATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCT
130 TCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * *
28548736 TGGTTCTTTGATGAACTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGTTTCCTT
195 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * *
28548801 AAAGCATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCA
260 AAAGTATT-AAGACGATCCATTCCCTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCA
* ** * * *
28548866 TCATTTGGTCTAAATAGTTTGTTATTTTGTAGGCAAGTTTTGGTGTTTGAATTAAGATCTTATTT
324 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
* *
28548931 ATGTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAAC-TTCTGAA
389 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAA
*
28548975 CTTGTCAAACTTTTA-GAAGTTCTTTTATAACTTCG-GTTTCTTAAAGTATT-AGAGGCAATCCA
1 CTTGTCAAACTTTTACG-AGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGC-ATCCA
* * *
28549037 TTCCTTCGATCAATTTTTGAAATATTTCATGCTTGTGAAATAGCATCATTTGGTCTAAATAGTTT
64 TTCCTTCGATCAATTTTTGAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * *
28549102 GTCATTTTTTAAACATGTTTTGGTGTTTGGATTAAGAACATATTTACGTAAGAATTGTTTCTCTC
129 GTCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * *
28549167 TTGGTTCTTTGACAAACTTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCT
194 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * *
28549232 TAAAATATTCAAGACGATACTTTCCCTCGAGCAATTTTTCAAACAATACTTGCTCGGGAAATCGC
259 TAAAGTATT-AAGACGATCCATTCCCTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGC
* * *
28549297 ATCATTTGATCTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATAAAAAACTTATT
323 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATT
28549361 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
388 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* * * * * * *
28549406 CTTATCAAACTTTTAAGAGTTCTTTTATAACTTCG-TTTCCTTAAAGTATTTA-AGACGATACTT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGC-ATCCAT
* * * * ** *** * *
28549469 TTCGTCGAGCAATTTTTTG-AACATTCTTTGCTCAAAAAATAGCATCATTTGATCTAAATAG-TT
65 TCCTTCGATCAA-TTTTTGAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT
* ** * * *
28549532 GTCATTTTGTAAACAATTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAAAAATGTTTGTCTC
129 GTCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * * *
28549597 TTGGTTCTTGGACAAACTTCCGAACTTGTCAAA-ATTTAAGGGTTCTTTTATAACTTCTGTTCCT
194 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * * * * *
28549661 TAAAGTATTAGAGACAATCCATTCCTTAGATCAATTTTCCGAATAGTTCATGCTCGTGAAATCGC
259 TAAAGTATTA-AGACGATCCATTCCCTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGC
* * * *
28549726 ATCATTTGGTCCAAATAGTTTCTCATTTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTAT
323 ATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * *
28549791 TTACGCGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCGAA
387 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* * *
28549837 CTTATCAAACTTTTATGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCATGATG-ATCCAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCA-GAGGCATCCAT
*
28549900 TCCTTCGAACAATTTTTGAACA-A-TCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT
65 TCCTTCGATCAATTTTTGAA-ATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
28549963 GTCATTTTGTAAACAAGTTTTGGTGTTTGAATGAAAATCTTATTTACGTGAGAATTATTTCTCTC
129 GTCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * * * *
28550028 TTGGTTCTTGGAGGAACTTCCGAACTAGTCAAACTTTTATGATTTCTTTTCTAACTTTGGTTCCT
194 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * *
28550093 TAAAGTATTGAAGACGATACTTTCTCTCGAGC-ATGTTTTCGAACAATCCATGCTCGGGAGATCG
259 TAAAGTATT-AAGACGATCCATTCCCTCGAGCAAT-TTTTCGAACAATCCATGCTCGGGAAATCG
* * * * *
28550157 CATCATTTGGTCTAAATAGTTTGTCATTTTGCATACAAGTTTTGGTGTTTAAATTAAAATCTTAT
322 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* *
28550222 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAAACTTTCAAA
387 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTTCGAA
* * * * * *
28550269 CTTGTCAAATTTTTATGAGTTCTTTTATAACTTTG-GTTCCTCAAAGTATT-AGAGACAATCAAT
1 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGC-ATCCAT
* ** * * * *
28550332 TCCTTCAATCAATTTTCCAAATAGTCCATGCTCGTGAAATCGTATCATTTGGTCCAAATAGTTTT
65 TCCTTCGATCAATTTTTGAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTG
*
28550397 TCATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
130 TCATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
28550462 TGGTTCTT
195 TGGTTCTT
28550470 TGATTGATAC
Statistics
Matches: 3753, Mismatches: 566, Indels: 287
0.81 0.12 0.06
Matches are distributed among these distances:
398 5 0.00
399 157 0.04
400 8 0.00
401 1 0.00
402 1 0.00
403 13 0.00
404 71 0.02
405 18 0.00
406 1 0.00
409 1 0.00
410 1 0.00
412 2 0.00
413 51 0.01
414 3 0.00
415 2 0.00
416 51 0.01
417 5 0.00
418 1 0.00
419 1 0.00
420 1 0.00
421 53 0.01
422 337 0.09
423 6 0.00
424 3 0.00
425 10 0.00
426 189 0.05
427 186 0.05
428 12 0.00
429 179 0.05
430 395 0.11
431 1013 0.27
432 781 0.21
433 189 0.05
434 6 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (432 bp):
CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAGTTCCTTAAAGTATTCAGAGGCATCCATT
CCTTCGATCAATTTTTGAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
AAGTATTAAGACGATCCATTCCCTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATC
ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
Found at i:28560507 original size:30 final size:31
Alignment explanation
Indices: 28560453--28560523 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 31
28560443 GGCTTGGAAG
* * *
28560453 ATGCGAGCACTGGTGTTGCAAGCACTCAT-T
1 ATGCGAACACTGGAGCTGCAAGCACTCATGT
* *
28560483 ATGCGAACACTGGAGCTGCGAGCACTGATGT
1 ATGCGAACACTGGAGCTGCAAGCACTCATGT
28560514 -TGCGAACACT
1 ATGCGAACACT
28560524 CGAGTTGTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 34 0.97
31 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (31 bp):
ATGCGAACACTGGAGCTGCAAGCACTCATGT
Found at i:28568880 original size:24 final size:25
Alignment explanation
Indices: 28568831--28568881 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
28568821 AGTTAATAAT
28568831 AATTCTCTTTGAGTTTTTCTTCAAG
1 AATTCTCTTTGAGTTTTTCTTCAAG
* *
28568856 AATTGCTC-TTGA-TTTTTTTTTAAG
1 AATT-CTCTTTGAGTTTTTCTTCAAG
28568880 AA
1 AA
28568882 GTCATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 12 0.52
25 8 0.35
26 3 0.13
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (25 bp):
AATTCTCTTTGAGTTTTTCTTCAAG
Found at i:28569688 original size:30 final size:30
Alignment explanation
Indices: 28569654--28569710 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
28569644 ACTCATGATG
*
28569654 CGAACACTGGAGCTGCGAGCATTGATGTTA
1 CGAACACTGGAGCTGCGAGCATGGATGTTA
* * *
28569684 CGAACACTTGAGTTGTGAGCATGGATG
1 CGAACACTGGAGCTGCGAGCATGGATG
28569711 AAGGCCGAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.25
Consensus pattern (30 bp):
CGAACACTGGAGCTGCGAGCATGGATGTTA
Found at i:28571863 original size:216 final size:216
Alignment explanation
Indices: 28570910--28572528 Score: 1911
Period size: 216 Copynumber: 7.6 Consensus size: 216
28570900 CATCACTTTC
* ** * * *
28570910 CCTT-GAGCAATTTTTCAAACAATATATGCTCGGTAAATCGCACCATTTGATCTAAATAG-TTGT
1 CCTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * *
28570973 CATTTTGTAAATAAGTTTTGGTCTTTAAACTAAAAACTTATTTACGTGAGAA-T-TTTCTCTCTT
66 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * *
28571036 -ATGTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
131 GGT-TCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC-T
* *
28571100 TGAAGTGTT-AGAGGA-AATCCATT
194 TAAAGTATTCA-A-GACAATCCATT
* * *
28571123 CCTTCGATCAATTTTT-G-ACATACTCCATGCTCGTGAAATAGCATCATTTGGTCTAAATAGTTT
1 CCTTCGAGCAATTTTTCGAACA-A-TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
28571186 GTCATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTAAGAATTGTTTCTCTC
64 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * *
28571251 TTGGTTCTTTGACGAACTTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACATCGGTTTCT
129 TTGGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * *
28571316 TAAAGTATTTAAGACAATACTTT
194 TAAAGTATTCAAGACAATCCATT
* * * * * *
28571339 CCCTCGAGCAATTTTT-GAACATTCCTTGCTCGGGAAATCACATTATTTGATCTAAATAG-TTGT
1 CCTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * *
28571402 CATTTTGCAAACAAGTTTTGGTTTTTAAATTAAAAACTTATTTACGTGAGAAATGTTCCTCTCTT
66 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * *
28571467 GGTT-ATTG--G-A--TTCGAACTTGTCAAAATTTTACAAGTTCTTTTATATCTTCTGTTCCTTA
131 GGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-
28571526 AAAGTATT-AGAGACAATCCATT
195 AAAGTATTCA-AGACAATCCATT
** * * * * * * * *
28571548 CCTTCGATTAATTTTTTGAATAGTCCGTGCTCGTGAAATCGCATCATTTGGTCCAAACAGTTTCT
1 CCTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * *
28571613 CATTTTATAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCT
66 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* *
28571678 GGTTCTTTGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTA
131 GGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* *
28571743 AAGTATTCAAGACGATCCGTT
196 AAGTATTCAAGACAATCCATT
* * * *
28571764 CCTTTGAGCAATCTTTCAAACAATCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGT
1 CCTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * *
28571829 CATTTTGTAAACAAGCTTTGGTGTTTGAATTAAAATCTTATTTATGTGAGAATTGTTTCTCTCTT
66 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * *
28571894 GGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTA
131 GGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* *
28571959 AAGTATTAAAGTCAATCCATT
196 AAGTATTCAAGACAATCCATT
* * * ** * * * *
28571980 CCTTCGATCAATTTTTCG-ATATTCCATGCTCTTGAAATCACATTATTTGGTCCAAATAGTTTCT
1 CCTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * *
28572044 CATATTT-TAAACAATTTTTGGT-TTTCG-ATTAAAAACCTATTTATGTGAGAATTGTTTCTCTC
66 CAT-TTTGTAAACAAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * *
28572106 TTGGTTCTTTGACAAATTTTCGAACTTCTCAAACTTTTACGAGTCCTTTTATAACTTCAGTTCCT
129 TTGGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* *
28572171 TAAAGTATTCAATACGATCCATT
194 TAAAGTATTCAAGACAATCCATT
* **
28572194 CCTTCGAGCAATTTCTCGAACAATCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGT
1 CCTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * *
28572259 CATTTTGTAAACAAGTTTTAGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTT
66 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * *
28572324 GGTTCTTGGACTAACTTCCGAA-TTGTCAAACTTTTACAATTTCTTTTATAACTTTGGTTTCTTA
131 GGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * *
28572388 AAGTATTCAATACGATACTTT
196 AAGTATTCAAGACAATCCATT
* * * * * *
28572409 CCCTT-GAGTAATTTTTCGAACAATACTTGCTCGGTAAATCGCACCATTTGATCTAAATAG-TTG
1 -CCTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
28572472 TCATTTTGTAAACAATTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGT
65 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
28572529 GAAAATGATT
Statistics
Matches: 1199, Mismatches: 179, Indels: 55
0.84 0.12 0.04
Matches are distributed among these distances:
208 41 0.03
209 31 0.03
210 35 0.03
211 65 0.05
212 6 0.01
213 8 0.01
214 292 0.24
215 293 0.24
216 313 0.26
217 114 0.10
218 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
CCTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
AAGTATTCAAGACAATCCATT
Found at i:28572140 original size:430 final size:428
Alignment explanation
Indices: 28570907--28572528 Score: 2006
Period size: 430 Copynumber: 3.8 Consensus size: 428
28570897 TCACATCACT
* ** * *
28570907 TTCCCTTGAGCAATTTTTCAAACAATATATGCTCGGTAAATCGCACCATTTGATCTAAATAGTTG
1 TTCCCTCGAGCAA-TTTTCAAACAATCCATGCTCGGGAAATCGCATCATTTGATCTAAATAGTTG
* * *
28570972 TCATTTTGTAAATAAGTTTTGGTCTTTAAACTAAAAACTTATTTACGTGAGAA-T-TTTCTCTCT
65 TCATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * *
28571035 T-ATGTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
130 TGGT-TCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCC-
* *
28571099 TTGAAGTGTTAGAGGA-AATCCATTCCTTCGATCAATTTTTGACATACTCCATGCTCGTGAAAT-
193 TTAAAGTATTAGA-GACAATCCATTCCTTCGATCAATTTTTGA-ATACTCCATGCTCGTGAAATC
* *
28571162 AGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTT
256 A-CATCATTTGGTCCAAATAGTTTCTCA-TTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTT
* *
28571227 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAACTTTTACG
319 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACG
* * * * * * * *
28571292 ATTTCTTTTATAACATCGGTTTCTTAAAGTATTTAAGACAATACT
384 AGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCA
** * * * *
28571337 TTCCCTCGAGCAATTTTTGAACATTCCTTGCTCGGGAAATCACATTATTTGATCTAAATAGTTGT
1 TTCCCTCGAGCAATTTTCAAACAATCCATGCTCGGGAAATCGCATCATTTGATCTAAATAGTTGT
* * * *
28571402 CATTTTGCAAACAAGTTTTGGTTTTTAAATTAAAAACTTATTTACGTGAGAAATGTTCCTCTCTT
66 CATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * *
28571467 GGTTATT-G--G-A-TT-CGAACTTGTCAAAATTTTACAAGTTCTTTTATATCTTCTGTTCCTTA
131 GGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTT-
* * * *
28571526 AAAGTATTAGAGACAATCCATTCCTTCGATTAATTTTTTGAATAGTCCGTGCTCGTGAAATCGCA
195 AAAGTATTAGAGACAATCCATTCCTTCGATCAA-TTTTTGAATACTCCATGCTCGTGAAATCACA
*
28571591 TCATTTGGTCCAAACAGTTTCTCATTTTATAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTT
259 TCATTTGGTCCAAATAGTTTCTCATTTT-TAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTT
* *
28571656 ACGTGAGAATTGTTTCTCTCCTGGTTCTTTGATGAACTTTCGAACTTGTCAAACTTTTACGAGTT
323 ACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTT
*
28571721 CTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCG
388 CTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCA
* * * *
28571762 TTCCTTTGAGCAATCTTTCAAACAATCCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTT
1 TTCCCTCGAGCAAT-TTTCAAACAATCCATGCTCGGGAAATCGCATCATTTGATCTAAATAG-TT
* * * *
28571827 GTCATTTTGTAAACAAGCTTTGGTGTTTGAATTAAAATCTTATTTATGTGAGAATTGTTTCTCTC
64 GTCATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* **
28571892 TTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCT
129 TTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCT
* * * *
28571957 TAAAGTATTAAAGTCAATCCATTCCTTCGATCAATTTTTCG-ATATTCCATGCTCTTGAAATCAC
194 TAAAGTATTAGAGACAATCCATTCCTTCGATCAATTTTT-GAATACTCCATGCTCGTGAAATCAC
* * * *
28572021 ATTATTTGGTCCAAATAGTTTCTCATATTTTAAACAATTTTTGGT-TTTCGATTAAAAACCTATT
258 ATCATTTGGTCCAAATAGTTTCTCAT-TTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATT
* * * *
28572085 TATGTGAGAATTGTTTCTCTCTTGGTTCTTTGACAAATTTTCGAACTTCTCAAACTTTTACGAGT
322 TACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGT
* *
28572150 CCTTTTATAACTTCAGTTCCTTAAAGTATTCAATACGATCCA
387 TCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCA
* * ** *
28572192 TTCCTTCGAGCAATTTCTCGAACAATCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTT
1 TTCCCTCGAGCAATTT-TCAAACAATCCATGCTCGGGAAATCGCATCATTTGATCTAAATAG-TT
* * *
28572257 GTCATTTTGTAAACAAGTTTTAGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTC
64 GTCATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * *
28572322 TTGGTTCTTGGACT-AACTTCCGAA-TTGTCAAACTTTTACAATTTCTTTTATAACTTTGGTTTC
129 TTGGTTCTTGGA-TGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCC
* * * * * * * *
28572385 TTAAAGTATTCA-ATACGATACTTTCCCTT-GAGT-AATTTTTCGAACAATACTTGCTCG-GTAA
193 TTAAAGTATT-AGAGACAATCCATT-CCTTCGA-TCAATTTTT-GAATACTCCATGCTCGTG-AA
* * * * * * **
28572446 ATCGCACCATTTGATCTAAATAG-TTGTCATTTTGTAAACAATTTTTGGTCTTTAAATTAAAAAC
253 ATCACATCATTTGGTCCAAATAGTTTCTCATTTT-TAAACAAGTTTTGGTCTTTGGATTAAAAAC
28572510 TTATTTACGTGAGAATTGT
317 TTATTTACGTGAGAATTGT
28572529 GAAAATGATT
Statistics
Matches: 1043, Mismatches: 122, Indels: 54
0.86 0.10 0.04
Matches are distributed among these distances:
424 8 0.01
425 250 0.24
426 48 0.05
427 68 0.07
428 5 0.00
429 176 0.17
430 334 0.32
431 76 0.07
432 37 0.04
433 41 0.04
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (428 bp):
TTCCCTCGAGCAATTTTCAAACAATCCATGCTCGGGAAATCGCATCATTTGATCTAAATAGTTGT
CATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTA
AAGTATTAGAGACAATCCATTCCTTCGATCAATTTTTGAATACTCCATGCTCGTGAAATCACATC
ATTTGGTCCAAATAGTTTCTCATTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
TTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCA
Found at i:28573866 original size:15 final size:15
Alignment explanation
Indices: 28573803--28573879 Score: 61
Period size: 15 Copynumber: 5.1 Consensus size: 15
28573793 AAGATGCAAG
*
28573803 CACTGGTGTTGCG-A
1 CACTGATGTTGCGAA
*
28573817 CTACTCATGTTGCGAA
1 C-ACTGATGTTGCGAA
* * *
28573833 CACTGGA-GCTGCTAG
1 CACT-GATGTTGCGAA
28573848 CACTGATGTTGCGAA
1 CACTGATGTTGCGAA
28573863 CACTCG-TGTTGCGAA
1 CACT-GATGTTGCGAA
28573878 CA
1 CA
28573880 TGGATGACGG
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
14 3 0.06
15 42 0.86
16 4 0.08
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (15 bp):
CACTGATGTTGCGAA
Found at i:28575530 original size:215 final size:212
Alignment explanation
Indices: 28575110--28576514 Score: 938
Period size: 215 Copynumber: 6.4 Consensus size: 212
28575100 CACATTATTA
* * *
28575110 AGTTCCTTAAAGTATTCAGGATGAT-CTATTCCTTCCAACAATTTTTTGAACATTCCATGCTTGG
1 AGTTCCTTAAAGTATTCAAGATGATACT-TTCC--CC-ACAATTTTTTTAACATTCCATGCTCGG
** * * ** * * *
28575174 GAAATCATATCATTTGGTTTAAATAGTTTGTCATT-TCGTAAAGGAGTTTTTGTGTTTGTATTAA
62 GAAATCGCATCATTTGGTCTAAATAGTTT-TCCTTAT-GTAAACAAGTTTTGGTCTTTGAATTAA
* * * * * *
28575238 AATCTTATTTATGTGAGAATTGTTTCTCGCTTAGTTCTTGCACGAACTTCAGAATTTGTCAAACT
125 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACT
*
28575303 TTTACAAGTTCTTTTATAACTTC
190 TTTACGAGTTCTTTTATAACTTC
* **
28575326 AGTTCCTTAAAGTATTTAAGATGATACTTTCCCCTGAGCAATTTTTTTAACATTCTTTGCTCGGG
1 AGTTCCTTAAAGTATTCAAGATGATACTTTCCCC--A-CAATTTTTTTAACATTCCATGCTCGGG
* *
28575391 AAATCGCATCATTTGATCTAAATAGTTTTCCTTATGTAAACAAGTTTTGGTCTTTAAATTAAAAA
63 AAATCGCATCATTTGGTCTAAATAGTTTTCCTTATGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* *
28575456 CTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
128 CTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
28575521 ACGAGTTCTTTTATAACACTTC
193 ACGAGTTCTTTTAT-A-ACTTC
** ** * *
28575543 AGTTCCTTAAAGTATT--AGA-G--ACAAT---C-C-A-TTCCTT--CGATCCCATGCTCGTGAA
1 AGTTCCTTAAAGTATTCAAGATGATACTTTCCCCACAATTTTTTTAAC-ATTCCATGCTCGGGAA
* * *
28575595 ATCGCATCATTTGGTCTAAATAG-TTTCTCATATTTTAAACAAGTTTTGGTCTTTGGATTAAAAA
65 ATCGCATCATTTGGTCTAAATAGTTTTC-CTTA-TGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * *
28575659 ATTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTTGACGAACTTCCGAACTTCTCAATCTTTT
128 CTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
28575724 ACGAGTTCTTTTATAACTTC
193 ACGAGTTCTTTTATAACTTC
28575744 -GATTCCTTAAAGTATTCAAGATGATACTTTCCCTCAAGCAATTTTCGTGAAGTATTAAAGACGA
1 AG-TTCCTTAAAGTATTCAAGATGATACTTTCCC-C-A-CAA-TTT--T----T-TT--A-AC-A
* * * * *
28575808 -TCCACTCCTTCCAGCAACTTTCTGAACATTCCATGCTCGGGAAATCATATCATTTGGTTTATAT
50 TTCCA-TGC-T-CGGGAA--ATC-G--CA-T-CAT--T-TGG---TC---T-A--------A-AT
* * * * * * * *
28575872 ATTTTGTCATTTTGTAAACATGTTTTTGTGTTTGAATTAAAATCTTATTTACGAGAGAATTG-TT
86 AGTTT-TCCTTATGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * *
28575936 -TCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
150 CTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * *** * * * *
28575998 GGTTCCTTAATGTATTAAAGATGATACTTTCCTTCGAGCAATTTTCCGAACAATACTTGCTTGGG
1 AGTTCCTTAAAGTATTCAAGATGATACTTTCC--CCA-CAATTTTTTTAACATTCCATGCTCGGG
* * * * * * * *
28576063 AAATCGTATCATTTGATCTAAATAATTGTCATTTTGTAAACAAGTTTTTGTCTTTAAATTAAAAA
63 AAATCGCATCATTTGGTCTAAATAGTTTTCCTTATGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * * *
28576128 CTTACTTACGTGAGAATTATTTCTCTTTTGGTTCTTGCACGAACTTCTGATCTTGTCAAACTTTT
128 CTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
28576193 ACGAGTTCTTTTATAACTTC
193 ACGAGTTCTTTTATAACTTC
* * * * * * ** *
28576213 TGTTCATTAAAGTATTCAAGATGATCCATTCGTACCAGTAATTTTTCAAACATTCCATGCTCGAG
1 AGTTCCTTAAAGTATTCAAGATGATACTTTC--CCCA-CAATTTTTTTAACATTCCATGCTCGGG
* * * * * * *
28576278 AAATCACATTATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTGTTTGAATTAAAA
63 AAATCGCATCATTTGGTCTAAATAGTTT-TCCTTATGTAAACAAGTTTTGGTCTTTGAATTAAAA
* * * * *
28576343 TCTTATTTA--TGAGAATTGTTTCTCTCTTGGTTTTTGGACCAACTTCTGAACTTGTCAAACTTT
127 ACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
* *
28576406 TACAAATTCTTTTATAAC-T-
192 TACGAGTTCTTTTATAACTTC
** * * * *** * **
28576425 --TT-GGTAAAGTATTCAAGACGATCCATTCCTTCCAACAATTTTCCGAGCATTCCATGCTCGAA
1 AGTTCCTTAAAGTATTCAAGATGATACTTTCC--CC-ACAATTTTTTTAACATTCCATGCTCGGG
*
28576487 AAATCACATCATTTGGTCTAAATAGTTT
63 AAATCGCATCATTTGGTCTAAATAGTTT
28576515 GTTGATACGA
Statistics
Matches: 953, Mismatches: 156, Indels: 167
0.75 0.12 0.13
Matches are distributed among these distances:
200 1 0.00
201 24 0.03
202 38 0.04
203 107 0.11
204 2 0.00
205 1 0.00
206 3 0.00
209 74 0.08
210 4 0.00
212 3 0.00
213 51 0.05
214 75 0.08
215 227 0.24
216 117 0.12
217 23 0.02
223 3 0.00
224 1 0.00
227 5 0.01
228 5 0.01
229 1 0.00
230 4 0.00
231 1 0.00
232 2 0.00
233 4 0.00
234 1 0.00
235 3 0.00
236 1 0.00
237 4 0.00
238 2 0.00
239 1 0.00
240 5 0.01
241 1 0.00
242 3 0.00
243 6 0.01
244 1 0.00
246 1 0.00
247 1 0.00
251 1 0.00
253 3 0.00
254 89 0.09
255 4 0.00
256 45 0.05
257 3 0.00
258 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (212 bp):
AGTTCCTTAAAGTATTCAAGATGATACTTTCCCCACAATTTTTTTAACATTCCATGCTCGGGAAA
TCGCATCATTTGGTCTAAATAGTTTTCCTTATGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
ATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
AGTTCTTTTATAACTTC
Found at i:28575738 original size:203 final size:200
Alignment explanation
Indices: 28575383--28575759 Score: 578
Period size: 203 Copynumber: 1.9 Consensus size: 200
28575373 TAACATTCTT
*
28575383 TGCTCGGGAAATCGCATCATTTGATCTAAATAGTTTTCCTTATGTAAACAAGTTTTGGTCTTTAA
1 TGCTCGGGAAATCGCATCATTTGATCTAAATAGTTTTCATTATGTAAACAAGTTTTGGTCTTTAA
* * * *
28575448 ATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
66 ATTAAAAAATTATGTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTCTC
28575513 AAACTTTTACGAGTTCTTTTATAACACTTC-AGTTCCTTAAAGTATTAGAGACAATCCATTCCTT
131 AAACTTTTACGAGTTCTTTTAT-A-ACTTCGA-TTCCTTAAAGTATTAGAGACAATCCATTCCTT
28575577 CGATCCCA
193 CGATCCCA
* * *
28575585 TGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTCTCA-TATTTTAAACAAGTTTTGGTCTTT
1 TGCTCGGGAAATCGCATCATTTGATCTAAATAGTTT-TCATTA-TGTAAACAAGTTTTGGTCTTT
** * *
28575649 GGATTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTTGACGAACTTCCGAACTTC
64 AAATTAAAAAATTATGTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTC
*
28575714 TCAATCTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT
129 TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT
28575760 CAAGATGATA
Statistics
Matches: 159, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
201 19 0.12
202 38 0.24
203 102 0.64
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (200 bp):
TGCTCGGGAAATCGCATCATTTGATCTAAATAGTTTTCATTATGTAAACAAGTTTTGGTCTTTAA
ATTAAAAAATTATGTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTCTC
AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTAGAGACAATCCATTCCTTCGA
TCCCA
Found at i:28576040 original size:254 final size:256
Alignment explanation
Indices: 28575582--28576043 Score: 662
Period size: 254 Copynumber: 1.8 Consensus size: 256
28575572 TCCTTCGATC
* *
28575582 CCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTCTCATATTTTAAACAAGTTTTGGTCT
1 CCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTCTCATATTTTAAACAAGTTTTGGTCT
* * *
28575647 TTGGATTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTTGACGAACTTCCGAACT
66 TTGAATTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACT
* *
28575712 TCTCAATCTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATACTTTCCC
131 TCTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTAAAGATGATACTTTCCC
28575777 TCAAGCAATTTTCGTGAAGTATTAAAGACGATCCACTCCTTCCAGCAACTTTCTGAACATT
196 TCAAGCAATTTTCGTGAAGTATTAAAGACGATCCACTCCTTCCAGCAACTTTCTGAACATT
* * * * * * * *
28575838 CCATGCTCGGGAAATCATATCATTTGGTTTATATATTTTGTCAT-TTTGTAAACATGTTTTTGTG
1 CCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTCTCATATTT-TAAACAAGTTTTGGTC
** * *
28575902 TTTGAATTAAAATCTTATTTACGA-GAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAAA
65 TTTGAATTAAAAAATTATTTAC-ATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAA
* * *
28575964 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAATGTATTAAAGATGATACTTTC
129 CTTCTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTAAAGATGATACTTTC
* *
28576029 CTTCGAGCAATTTTC
194 CCTCAAGCAATTTTC
28576044 CGAACAATAC
Statistics
Matches: 180, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
254 97 0.54
255 5 0.03
256 77 0.43
257 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (256 bp):
CCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTCTCATATTTTAAACAAGTTTTGGTCT
TTGAATTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACT
TCTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTAAAGATGATACTTTCCC
TCAAGCAATTTTCGTGAAGTATTAAAGACGATCCACTCCTTCCAGCAACTTTCTGAACATT
Found at i:28576202 original size:469 final size:458
Alignment explanation
Indices: 28575374--28576237 Score: 1087
Period size: 469 Copynumber: 1.9 Consensus size: 458
28575364 CAATTTTTTT
** * *
28575374 AACATTCTTTGCTCGGGAAATCGCATCATTTGATCTAAATAGTTTTCCTTATGTAAACAAGTTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGATCTAAATAGTTTTCATTATGTAAACAAGTTTT
*
28575439 GGTCTTTAAATTAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
66 GGTCTTTAAATTAAAAACTTATGTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
* * *
28575504 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACACTTCAGTTCCTTAAAGTATTAGAGACAATC
131 AAACTTGTCAAACTTTTACGAGTTCTTTTATAACACTTCAGTTCCTTAAAGTATTAAAGACAATA
* * *
28575569 CATTCCTTCGATCCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTCTCATATTTTAAA
196 CATTCCTTCGATCCCATGCTCGGGAAATCGCATCATTTGATCTAAATAGATTCTCATATTTTAAA
** * *
28575634 CAAGTTTTGGTCTTTGGATTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTTGAC
261 CAAGTTTTGGTCTTTAAATTAAAAAATTACTTACATGAGAATTATTTCTCTCTTAGTTCTTTGAC
* *
28575699 GAACTTCCGAACTTCTCAATCTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAA
326 GAACTTCCGAACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCATTAAAGTATTCAA
28575763 GATGATACTTTCCCTCAAGCAATTTTCGTGAAGTATTAAAGACGATCCACTCCTTCCAGCAACTT
390 GATGATACTTTCCCTCAAGCAATTTTCGTGAAGTATTAAAGACGATCCACTCCTTCCAGCAACTT
28575828 TCTG
455 TCTG
* * * * * * *
28575832 AACATTCCATGCTCGGGAAATCATATCATTTGGTTTATATATTTTGTCATTTTGTAAACATGTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGATCTAAATAGTTT-TCATTATGTAAACAAGTTT
* * * * * *
28575897 TTGTGTTTGAATTAAAATCTTATTTACGAGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTT
65 TGGTCTTTAAATTAAAAACTTATGTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * **
28575960 CAAACTTGTCAAACTTTTACGAGTTCTTTTAT-A-ACTTCGGTTCCTTAATGTATTAAAGATGAT
130 CAAACTTGTCAAACTTTTACGAGTTCTTTTATAACACTTCAGTTCCTTAAAGTATTAAAGACAAT
* * *
28576023 ACTTTCCTTCGAGCAATTTTCCGAACAATACTTGCTTGGGAAATCGTATCATTTGATCTAAATA-
195 ACATTCCTTC--G--A---TCC---C---A--TGCTCGGGAAATCGCATCATTTGATCTAAATAG
* * * *
28576087 ATTGTCAT-TTTGTAAACAAGTTTTTGTCTTTAAATTAAAAACTTACTTACGTGAGAATTATTTC
245 ATTCTCATATTT-TAAACAAGTTTTGGTCTTTAAATTAAAAAATTACTTACATGAGAATTATTTC
* * * * *
28576151 TCTTTTGGTTC-TTGCACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG
309 TCTCTTAGTTCTTTG-ACGAACTTCCGAACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCTG
28576215 TTCATTAAAGTATTCAAGATGAT
373 TTCATTAAAGTATTCAAGATGAT
28576238 CCATTCGTAC
Statistics
Matches: 341, Mismatches: 46, Indels: 27
0.82 0.11 0.07
Matches are distributed among these distances:
455 33 0.10
456 1 0.00
457 55 0.16
458 39 0.11
459 48 0.14
462 3 0.01
465 1 0.00
468 7 0.02
469 125 0.37
470 29 0.09
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (458 bp):
AACATTCCATGCTCGGGAAATCACATCATTTGATCTAAATAGTTTTCATTATGTAAACAAGTTTT
GGTCTTTAAATTAAAAACTTATGTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
AAACTTGTCAAACTTTTACGAGTTCTTTTATAACACTTCAGTTCCTTAAAGTATTAAAGACAATA
CATTCCTTCGATCCCATGCTCGGGAAATCGCATCATTTGATCTAAATAGATTCTCATATTTTAAA
CAAGTTTTGGTCTTTAAATTAAAAAATTACTTACATGAGAATTATTTCTCTCTTAGTTCTTTGAC
GAACTTCCGAACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCATTAAAGTATTCAAG
ATGATACTTTCCCTCAAGCAATTTTCGTGAAGTATTAAAGACGATCCACTCCTTCCAGCAACTTT
CTG
Found at i:28578444 original size:216 final size:216
Alignment explanation
Indices: 28578057--28582247 Score: 5254
Period size: 216 Copynumber: 19.4 Consensus size: 216
28578047 ACTCGTATCA
** * * * * *
28578057 TTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCATTTACATAATAATTCTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * * * * *
28578122 CTCTTGGTTCTTGGATGAACTTTC-AATTTTTTCAAACTTTTACAAGTTCTTTTATAACATCGGT
66 CTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * ** *
28578186 TCCTTAAAGTATTCAAGATGATCCATTCATTTGAGAAATTTTTCGAACATTCCATGCTCGGGAAA
130 TCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAA
*
28578251 TCACATAATTTGGTCTAAATAG
195 TCACATCATTTGGTCTAAATAG
* * * *
28578273 TTTGTCATTTTGTAAACAAGTTTTGCTGTTTTAATTAAAATCTTATTTACATGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * *
28578338 CTCTTGGTTCTTGGACGAACTACCGAACTTGTCAAACTTTTATGAGTTCATTTATAACTTCGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * * * *
28578403 CATTAAAGTATTCAACATGATACTTTCCTTCAAGCAATTTTTTGAACATTCCTTGCTCGGGAAAT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * *
28578468 CGCACCATTTGATCTAAATAG
196 CACATCATTTGGTCTAAATAG
* *
28578489 -TTGTCATTTTGTAAACAAGTTTTGTTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
**** * *
28578553 CTCTTACCACTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA-TTACTTTTATAACTTTGGT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-CTTTTATAACTTCGGT
* * * * * * * *
28578617 TCCTTAAAGTATTCAAGACGATACTTTCCCTT-GAGCAATATTTCGAACAATACTTGCTTGGGAA
130 TCCTTAAAGTATTCAAGACGATCCATT-CCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAA
** * *
28578681 ATGGCATCATTTGATGTAAATAG
194 ATCACATCATTTGGTCTAAATAG
* * * * * * *
28578704 -TTGTCATTTTGTAAATAATTTTTGGTCTTTAAATTATGAA-CCTACTTACGTGAAAATTGTTTC
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAATCTTATTTACGTGAGAATTGTTTC
* * *
28578767 TCTCTTGGTTCTTGGACGAACTTTC-ATTCTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGG
65 TCTCTTGGTTCTTGGACGAACTTCCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * *
28578831 TTCATTAAAGTATTCAAGACGATCCAATCCTTCCAGCAATTTTTTGAACATTCCATGCTCAGGAA
129 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAA
* *
28578896 GTCACATCATTTGGTTTAAATAG
194 ATCACATCATTTGGTCTAAATAG
** * *
28578919 TTAATCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGCATTGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * *
28578984 CTCTTAGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
28579049 TCGTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTC-AAGCATTCCATGCTAGGGAAA
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAA-CATTCCATGCTCGGGAAA
* **
28579113 -GAGCATCATTTGCACTAAATAG
195 TCA-CATCATTTGGTCTAAATAG
** * * *
28579135 TTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCATTTACGTGATAATTCTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * *
28579200 CTCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* *
28579265 CATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTAT--AACATTCCATGCTCGGGAAG
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTT-TCGAACATTCCATGCTCGGGAAA
*
28579328 TCACATCATTTGGTTTAAATAG
195 TCACATCATTTGGTCTAAATAG
** * *
28579350 TTAATCATTTTGTAAACAAGTTTTGGTGTTTGAAATAAAATCTTATTTACGTGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * * *
28579415 CTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTGTTATAACTTTGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * *
28579480 TCGTAAAGTATTCAAGATGATCCATTCCTTCCAACAATTTTTCGAGCATTCCATGCACGGGAAAT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
*
28579545 -AGCATCATTTGGACTAAATAG
196 CA-CATCATTTGGTCTAAATAG
** * * *
28579566 TTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCATTTACGTGATAATTCTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
*
28579631 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
28579696 CATTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAGT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
*
28579761 CACATCATTTGGTTTAAATAG
196 CACATCATTTGGTCTAAATAG
** *
28579782 TTAATCATTTTGTAAACAAGTTTTGGTGC-TTGAATTAAAATCTTATTTACGTGAGAATCGTTTC
1 TTTGTCATTTTGTAAACAAGTTTTGGT-CTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTC
* * * *
28579846 TCTCTCTGTTTC-TGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTGTTATAACTTTGG
65 TCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * *
28579910 TTCCGTAAAGTATTCAAGACAATCCATTCCTTCCAGTAATTTTTCGAGA-ATTCCATGCTTGGGA
129 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGA-ACATTCCATGCTCGGGA
* *
28579974 AATAACATCATTTGGTCTAATTAG
193 AATCACATCATTTGGTCTAAATAG
** * ** * * *
28579998 GATCTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCATTTACGTGATAATTCTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* *
28580063 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * *
28580128 CATTAAAGTATTCAAGACAATCTATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAGT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* *
28580193 CACATCATTTGGTTTAAACAG
196 CACATCATTTGGTCTAAATAG
** * *
28580214 TTAATCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATCGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * **
28580279 CTCTCTGTTTC-TAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTAGT
66 CTCT-TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
28580343 TTCGTAAAGTATTTAAGATGATCCATTCCTTCCAGCAATTTTTC-AAGCATTCCATGCTCGGGAA
130 TCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAA-CATTCCATGCTCGGGAA
*
28580407 AT-AGCATCATTTGGACTAAATAG
194 ATCA-CATCATTTGGTCTAAATAG
** * * *
28580430 TTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCATTTACGTGATAATTCTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * * *
28580495 CTCTTGATTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
28580560 CATTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTC-TGAAAG
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAA-
*
28580624 TCACATCATTTGGTTTAAATAG
195 TCACATCATTTGGTCTAAATAG
** * *
28580646 TTAATCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACTTGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * *
28580711 CTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTAGGAGTTCTTTTATAACTTTGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * *
28580776 CCGTAAAGTATTCAAGACAATCCATTCCTTCCAGTAA-TTTTCGAGA-ATTCCATGCTTGGGAAA
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGA-ACATTCCATGCTCGGGAAA
* *
28580839 TAACATCATTTGGTCTAATTAG
195 TCACATCATTTGGTCTAAATAG
** * * ** * *
28580861 GATCTCATTTTGTAAATAACATTTGGTCTTTGAATTAAAATCTCATTTACGTG-GTAATTCTTTC
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG-AATTGTTTC
* * * * *
28580925 TCTCTTGATTCCTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
65 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * *
28580990 TCCTTAAAGCATTCAAGACTATCCATTCCTTCGAGCAATTATCCAAACATTCCATGCTCGGGAAA
130 TCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAA
* *
28581055 GCACATTATTTGGTCTAAATAG
195 TCACATCATTTGGTCTAAATAG
* * * * *
28581077 TTTGTCATTTTGTACATAAGTTTTGCTGTTTTAATTAAAATCTCTTATTTACGTGAGAATTGTTT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA--TCTTATTTACGTGAGAATTGTTT
* * *
28581142 CTCTCTTGGTTCTTGGACAAACTTCCGAACTTGCCAAACTTTTACGAGTTCATTTATAACTTCGG
64 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * * * * * *
28581207 TTCCTTAAAGTATTCAAGATGATACTTTCCCTCGAGCAATTTTTCTATCATTCCTTGCTCGGGAA
129 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAA
* * *
28581272 GA-CGCATCATTTGATTTAAATAG
194 -ATCACATCATTTGGTCTAAATAG
* * * * *
28581295 -TTGCCATTTTGTAAACAAGTTTTGGACTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * * * *
28581359 CTCTTGATTCTTTGACAAACTTTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * *
28581424 CTTTAAAGTAATGAAGACGATTCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTCGGAAAA
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTC-GAACATTCCATGCTCGGGAAA
*
28581488 TCACATCATTTGGTCGAAATAG
195 TCACATCATTTGGTCTAAATAG
* * * * *
28581510 TTTGTCATTTTGTAAACAAGTTTTGGTGTCTGAATAAAAAACTTATTTACATGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
*
28581575 CTCTTGGTTCTTGGACGAACTTTCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAA
66 CTCTTGGTTCTT-G--G-A----CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
28581640 CTTCTGTTCGTTAAACTATTTAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGC-
123 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCT
** *
28581704 CGGGAAATTGCATCATTTGGTCTAAATCG
188 CGGGAAATCACATCATTTGGTCTAAATAG
* * * *
28581733 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTATGTGAGAATTATTTCC
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * *
28581798 CTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
28581863 CCTTAAAGTATTCAAGACGATCCATTCCTTCTAGCGATTTTTCGAGCATTCCATGCTCGGGAAAT
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
*
28581928 CGCATCATTTGGTCTAAATAG
196 CACATCATTTGGTCTAAATAG
** * *
28581949 TTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAGATCTTATTTACGTGAGAATTATTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
* * *
28582014 CTCTTAGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTT
66 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * * *
28582079 CCTTAAAGTATTCAAGATGATACTTTCCCT-CAGCAA-TTTTCTAAACATTCCTTGCTCAGGAAA
131 CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTC-GAACATTCCATGCTCGGGAAA
* * *
28582142 TCATACCATTTGATCTAAATAG
195 TCACATCATTTGGTCTAAATAG
* * * *
28582164 -TTGTCATTTTATAAACAAGTTTTAGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCT
1 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
*
28582228 CTCATGGTTCTTGGACGAAC
66 CTCTTGGTTCTTGGACGAAC
28582248 AATCCATTCC
Statistics
Matches: 3435, Mismatches: 486, Indels: 110
0.85 0.12 0.03
Matches are distributed among these distances:
214 94 0.03
215 1020 0.30
216 1930 0.56
217 52 0.02
218 147 0.04
219 4 0.00
220 2 0.00
222 1 0.00
223 91 0.03
224 89 0.03
225 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
CCTTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
CACATCATTTGGTCTAAATAG
Found at i:28578929 original size:431 final size:432
Alignment explanation
Indices: 28578061--28582247 Score: 5373
Period size: 431 Copynumber: 9.7 Consensus size: 432
28578051 GTATCATTTG
** * * * * * *
28578061 TCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCATTTACATAATAATTCTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * * * *
28578126 TGGTTCTTGGATGAACTTTC-AATTTTTTCAAACTTTTACAAGTTCTTTTATAACATCGGTTCCT
66 TGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCG
* * ** *
28578190 TAAAGTATTCAAGATGATCCATTCATTTGAGAAATTTTTCGAACATTCCATGCTCGGGAAATCA-
130 TAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAAT-AG
* * ** * * * * *
28578254 CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGCTGTTTTAATTAAAATCTTAT
194 CATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCAT
* * * ** *
28578319 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTACCGAACTTGTCAAACTTTTATGAG
259 TTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG
* * * * * * *
28578384 TTCATTTATAACTTCGGTTCATTAAAGTATTCAACATGATACTTTCCTTCAAGCAATTTTTTGAA
324 TTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAA
* * * * * * *
28578449 CATTCCTTGCTCGGGAAATCGCACCATTTGATCTAAATAGTT-G
389 CATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
* * *
28578492 TCATTTTGTAAACAAGTTTTGTTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
**** * *
28578557 TACCACTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA-TTACTTTTATAACTTTGGTTCCT
66 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-CTTTTATAACTTTGGTTCCG
* * * * * * * * *
28578621 TAAAGTATTCAAGACGATACTTTCCCTT-GAGCAATATTTCGAACAATACTTGCTTGGGAAATGG
130 TAAAGTATTCAAGACGATCCATT-CCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAATAG
* * ** * *
28578685 CATCATTTGATGTAAATAG-TTGTCATTTTGTAAATAATTTTTGGTCTTTAAATTATGAACCT-A
194 CATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTA-AAACCTCA
* * * * *
28578748 CTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-ATTCTTGTCAAAATTTTACG
258 TTTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAACTTTTACG
* *
28578812 AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCAATCCTTCCAGCAATTTTTTG
322 AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCG
*
28578877 AACATTCCATGCTCAGGAAGTCACATCATTTGGTTTAAATAGTTAA
387 AACATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
*
28578923 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGCATTGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
* * *
28578988 TAGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTTCGT
66 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCGT
* *
28579053 AAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTC-AAGCATTCCATGCTAGGGAAAGAGC
131 AAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATAGC
*
28579117 ATCATTTGCA-CTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCAT
195 ATCATTTG-ATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCAT
* * *
28579181 TTACGTGATAATTCTTTCTCTCTTGATTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAT
259 TTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG
*
28579246 TTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTAT--A
324 TTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTT-TCGA
28579309 ACATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
388 ACATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
*
28579354 TCATTTTGTAAACAAGTTTTGGTGTTTGAAATAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
28579419 TGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTGTTATAACTTTGGTTTCGT
66 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCGT
* * * *
28579484 AAAGTATTCAAGATGATCCATTCCTTCCAACAATTTTTCGAGCATTCCATGCACGGGAAATAGCA
131 AAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAATAGCA
*
28579549 TCATTTGGA-CTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCATT
196 TCATTT-GATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCATT
* *
28579613 TACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGATT
260 TACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGT
*
28579678 TCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCGAAC
325 TCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAAC
28579743 ATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
390 ATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
* *
28579786 TCATTTTGTAAACAAGTTTTGGTGCTTGAATTAAAATCTTATTTACGTGAGAATCGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
* * *
28579851 CTGTTTC-TGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTGTTATAACTTTGGTTCCG
66 -TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCG
* * * *
28579915 TAAAGTATTCAAGACAATCCATTCCTTCCAGTAATTTTTCGAGA-ATTCCATGCTTGGGAAATAA
130 TAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATAG
* * ** * *
28579979 CATCATTTGGTCTAATTAGGATCTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCAT
194 CATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCAT
*
28580044 TTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAT
259 TTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG
* *
28580109 TTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACAATCTATTCCTTCCAGCAATTTTTCGAA
324 TTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAA
*
28580174 CATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAACAGTTAA
389 CATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
*
28580218 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATCGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
28580283 CTGTTTC-TAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTAGTTTCG
66 -TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCG
* *
28580347 TAAAGTATTTAAGATGATCCATTCCTTCCAGCAATTTTTC-AAGCATTCCATGCTCGGGAAATAG
130 TAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATAG
*
28580411 CATCATTTGGA-CTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTCA
194 CATCATTT-GATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCA
*
28580475 TTTACGTGATAATTCTTTCTCTCTTGATTCTTGGACGAAC-TTCTGAACTTGTCAAACTTTTACG
258 TTTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACG
* * *
28580539 ATTTCTTTTATAACTTTGGTTCATTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCG
322 AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCG
* *
28580604 AACATTCCATGCTCTGAAAGTCACATCATTTGGTTTAAATAGTTAA
387 AACATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
*
28580650 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACTTGAGAATTGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
* *
28580715 TGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTAGGAGTTCTTTTATAACTTTGGTTCCGT
66 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCGT
* * * *
28580780 AAAGTATTCAAGACAATCCATTCCTTCCAGTAA-TTTTCGAGA-ATTCCATGCTTGGGAAATAAC
131 AAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATAGC
* * ** * * *
28580843 ATCATTTGGTCTAATTAGGATCTCATTTTGTAAATAACATTTGGTCTTTGAATTAAAATCTCATT
195 ATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCATT
* * * *
28580908 TACGTGGTAATTCTTTCTCTCTTGATTCCTGGACGAAC-TTCTGATCTTGTCAAACTTTTACGAG
260 TACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAG
* * * * * * * *
28580972 TTCTTTTATAACTTTGGTTCCTTAAAGCATTCAAGACTATCCATTCCTTCGAGCAATTATCCAAA
324 TTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAA
* * **
28581037 CATTCCATGCTCGGGAAAG-CACATTATTTGGTCTAAATAGTTTG
389 CATTCCATGCTCGGG-AAGTCACATCATTTGGTTTAAATAGTTAA
* * * *
28581081 TCATTTTGTACATAAGTTTTGCTGTTTTAATTAAAATCTCTTATTTACGTGAGAATTGTTTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAA--TCTTATTTACGTGAGAATTGTTTCTCT
* * * *
28581146 CTTGGTTCTTGGACAAACTTCCGAACTTGCCAAACTTTTACGAGTTCATTTATAACTTCGGTTCC
64 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * * * * * *
28581211 TTAAAGTATTCAAGATGATACTTTCCCTCGAGCAATTTTTCTATCATTCCTTGCTCGGGAAGA-C
129 GTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAA-ATA
* * ** * * * *
28581275 GCATCATTTGATTTAAATAG-TTGCCATTTTGTAAACAAGTTTTGGACTTTAAATTAAAAACTTA
193 GCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCA
* * * * * * *
28581339 TTTATGTGAGAATTGTTTCTCTCTTGATTCTTTGACAAACTTTCGATCTTGTCAAACTTTTACGA
258 TTTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * *
28581404 GTTCTTTTATAACTTCGGTTCTTTAAAGTAATGAAGACGATTCATTCCTTCGAGCAA-TTTTCTG
323 GTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTC-G
* * ** **
28581468 AACATTCCATGCTCGGAAAATCACATCATTTGGTCGAAATAGTTTG
387 AACATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
* * * *
28581514 TCATTTTGTAAACAAGTTTTGGTGTCTGAATAAAAAACTTATTTACATGAGAATTGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
*
28581579 TGGTTCTTGGACGAACTTTCGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTC
66 TGGTTCTT-G--G-A----CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-
* * *
28581644 T-GTT-CGTTAAACTATTTAAGACGATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGC-CG
122 TGGTTCCG-TAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCG
* * * *
28581706 GGAAATTGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
186 GGAAATAGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAA
* * * * * * * *
28581771 AATCTTATTTATGTGAGAATTATTTCCCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACT
251 AACCTCATTTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
* * * * *
28581836 TTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCTAGCGAT
316 TTTACGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAAT
* * * * **
28581901 TTTTCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
381 TTTTCGAACATTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
** * * *
28581953 TCATTTTGTAAACAACATTTGGTCTTTGAATTAAGATCTTATTTACGTGAGAATTATTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
* * * * *
28582018 TAGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTT
66 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCGT
* * * * * * *
28582083 AAAGTATTCAAGATGATACTTTCCCT-CAGCAA-TTTTCTAAACATTCCTTGCTCAGGAAAT--C
131 AAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTC-GAACATTCCATGCTCGGGAAATAGC
* ** * * * *
28582144 ATACCATTTGATCTAAATAG-TTGTCATTTTATAAACAAGTTTTAGTCTTTAAATTAAAAACTTA
195 AT--CATTTGATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCA
* * *
28582208 TTTACGTGAGAATTGTTTCTCTCATGGTTCTTGGACGAAC
258 TTTACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAAC
28582248 AATCCATTCC
Statistics
Matches: 3353, Mismatches: 345, Indels: 117
0.88 0.09 0.03
Matches are distributed among these distances:
429 9 0.00
430 282 0.08
431 1161 0.35
432 1161 0.35
433 327 0.10
434 40 0.01
435 3 0.00
436 1 0.00
437 1 0.00
438 25 0.01
439 338 0.10
440 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (432 bp):
TCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCT
TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCGT
AAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAATAGCA
TCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAACCTCATTT
ACGTGATAATTCTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTT
CTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACA
TTCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTAA
Found at i:28582691 original size:180 final size:180
Alignment explanation
Indices: 28582361--28582712 Score: 391
Period size: 180 Copynumber: 2.0 Consensus size: 180
28582351 TAAAATCTTA
* * * *
28582361 TTTACGTGAGAATTATTTTTCTCTTGGATCTTGTACGAACTTCCGATCTTGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
* ** *
28582426 GTTCTTTCATAACTTTGGTTCCATAAAGCATTCAAGACGATCCATTCCTTTCACCAATTTTCTGA
66 GTTCTTTCAAAACTTCAGTTCCATAAAGCATTCAAGACGATACATTCCTTTCACCAATTTTCTGA
* * * * *
28582491 ACATTCCATGCTCAGGAAATCATATCATTTGGTTTAAATAGTTTCTCATT
131 ACAATACATGCTCAGGAAATCACATCATTCGATTTAAATAGTTTCTCATT
* * * * *
28582541 TTTATGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAACTTTTATGA
1 TTTACGTGAGAATTATTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
* * * * * *** * * *
28582606 GTTCTTTTAAAACTTCAGTTCCTTAAAGTATTGACGGTTATACTTTCCTTTGAGCAATTTT-TCG
66 GTTCTTTCAAAACTTCAGTTCCATAAAGCATTCAAGACGATACATTCCTTTCACCAATTTTCT-G
* ** *
28582670 AACAATACTTGCTTGGGAAATCGCATCATTCGATTTAAATAGT
130 AACAATACATGCTCAGGAAATCACATCATTCGATTTAAATAGT
28582713 AGTCATTTTG
Statistics
Matches: 138, Mismatches: 33, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
179 1 0.01
180 137 0.99
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (180 bp):
TTTACGTGAGAATTATTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGA
GTTCTTTCAAAACTTCAGTTCCATAAAGCATTCAAGACGATACATTCCTTTCACCAATTTTCTGA
ACAATACATGCTCAGGAAATCACATCATTCGATTTAAATAGTTTCTCATT
Found at i:28583605 original size:215 final size:215
Alignment explanation
Indices: 28582541--28585951 Score: 3901
Period size: 216 Copynumber: 15.9 Consensus size: 215
28582531 GTTTCTCATT
* * * * * *
28582541 TTTATGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAACTTTTATGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * *** * * *
28582606 GTTCTTTTAAAACTTC-AGTTCCTTAAAGTATTGACGGTTATACTTTCCTTTGAGCAATTTTTCG
66 GTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-G
* * * * * * * * * *
28582670 AACAATACTTGCTTGGGAAATCGCATCATTCGATTTAAATAG-TAGTCATTTTGTAAACAAGTTT
129 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
28582734 TGGTCTTT-AATTTAAACA-CTTA
194 TGGTCTTTGAA-TTAAA-ATCTTA
* * * * *
28582756 CTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTTTGATCTTGTCAAACTTTTTTAC
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAAC--TTTTAC
* * ** * *
28582821 GAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAATATCCATTCCTACCAAG-AATTTTT
64 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAA-TTTT
* * * * *
28582885 TGAACATTCCATGCTCGGGAAATCATATTATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAGT
127 TGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
*
28582950 TTTGGTGTTTGAATTAAAATCTTA
192 TTTGGTCTTTGAATTAAAATCTTA
* * * * * * *
28582974 TGTA--TGAGAATGATTTCTTTCTTGGTTGTTGGACGAAC-TTCGAACTTTTCAAAATTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * * * * * **
28583036 GTTCTTTTATAACTTTGGTTCCGTAAAGTATTCAAGACGATTCATTCCTTCCAACAACTTTCCAA
66 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAA
*
28583101 GCATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATTT
131 -CATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* *
28583166 GGACTTTGAATTAAAATCTCA
195 GGTCTTTGAATTAAAATCTTA
* * * *
28583187 TTTACGTTAGAATTCTTTCTCTCTTGGTTTTTGGACGAACTTTCGA--TTGTCAAACTTTTACTA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* *
28583250 GTTCTTTTATAACTT-TAGTTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAGCAATTTTTTG
66 GTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTG
* *
28583314 AACAGTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATT
129 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
28583379 TGGTCTTTGAATTAAAATCTTA
194 TGGTCTTTGAATTAAAATCTTA
* *
28583401 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGAACAAACTTTCGATCTTGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * *
28583466 GTTCTTTTATAACTTCGATTCCTTAAAGTAATGAAGACGATCTATTCCTTCGAGCAATTTTTGAA
66 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAA
28583531 CATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
131 CATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* *
28583596 GTGTTTGAATTAAAAACTTA
196 GTCTTTGAATTAAAATCTTA
* * **
28583616 TTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAATTGT-AAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * * *
28583680 GTTATTTTATAACTTCTG-TTCATTAAAGTATAT-AAGAAGATCCATTCCTTCAAGAAATTTTTA
66 GTTCTTTTATAACTTC-GATTCCTTAAAGTAT-TCAAGACGATCCATTCCTTCGAGCAATTTTT-
** ** * * *
28583743 GAACATTCCATGCTCAAGAAATTGCATCATTTGGTCTAAATCGTTAGTCATTTTGTAAACAACAT
128 GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
*
28583808 TTGGTCCTTGAATTAAAATCTTA
193 TTGGTCTTTGAATTAAAATCTTA
* * *
28583831 TTTACGTGATAATTATTTCTCTCTTGGTTCTTGGACAAACTTTCGATCTTATCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
*
28583896 GTTCTTTTATAACTTCGGA--CCATTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTT
66 GTTCTTTTATAACTTC-GATTCC-TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTT
* * * *
28583959 GAATATTCCATGCTCGTGAAAT-AGCATCATTTGGTCTAAATAGTTTCTCATCTTT-TAAACAAG
128 GAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAAC
* * * * *
28584022 GTTTAGTCTTTGGATGAAAAACTTA
191 TTTTGGTCTTTGAATTAAAATCTTA
* * * * *
28584047 TTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACAA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * * *
28584112 GTTCTTTTAGAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTTGATCAATTTTCTG
66 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTT-TG
* ** * * * * *
28584176 AATATTCCATGCTCATGAAATCGCATCATTTAGTCTAAATAGTTTTTCATATTT-TAAAAAAGTT
129 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAACTT
* * *
28584240 TTGGTCCTTGGATTAAAAACTTA
193 TTGGTCTTTGAATTAAAATCTTA
* * * * * *
28584263 TTTATC-TAAGAATTGTTTCTCTCTTGGATCTTGAATGAACTGTCGAAT-TTGTCAAACTTTTAC
1 TTTA-CGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCG-ATCTTGTCAAACTTTTAC
** *** * * * *
28584326 GAGTTCTTTTATCGCTTTTCTTCGTTAAAGTTTTTAAGAC--T--A-TCCAT---GCAATTTTTC
64 GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-
* * * *
28584383 GAACATTCCATGCTTGAGAAATCACATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACAT
128 GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
*
28584448 TTGGTCTATGAATTAAAATCTTA
193 TTGGTCTTTGAATTAAAATCTTA
* * * *
28584471 TGTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTATTACAA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * * **
28584536 GTTC-ATTATAAATTCGGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGATTAATTTTTTGA
66 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGA
* * * ** * * **
28584600 ATATTCCATGCTAGTGAAATTGCATCATTTGGTCTAAATAGTTTCTCATTTTTTAAACAAGGTTT
130 ACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
*
28584665 GGTCTTTGGATTACAAA-CTTA
195 GGTCTTTGAATTA-AAATCTTA
* *
28584686 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * *
28584751 GTTCTTTTATAACTTTTG-TTCGTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTCTG
66 GTTCTTTTATAAC-TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TG
* * * * **
28584815 AGCATTCCATGCTCGGAAAATCGCATCATTTGGTCT-AATCGTTTACCATTTTGTAAACAA-TAT
129 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT-T
28584878 TTGGTCTTTGAATTAAAATCTTA
193 TTGGTCTTTGAATTAAAATCTTA
* * * *
28584901 TTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGC
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * *
28584966 GTTCTTTTATAACTTCGGTTCCTTAAAGTAATGAAGACGATCCATTCCTTCGAGCAATTTTTCAA
66 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GA
* *
28585031 ACATTCCATGCTTGGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
130 ACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* *
28585096 GGTGTTTGAATTAAAAACTTA
195 GGTCTTTGAATTAAAATCTTA
* *
28585117 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTCGATCTTGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * *
28585182 GTTCTTTTATAACTTCTG-TTCATTAAAGTATAT-AAGATGATCCATTCCTTCAAGTAATTTTTA
66 GTTCTTTTATAACTTC-GATTCCTTAAAGTAT-TCAAGACGATCCATTCCTTCGAGCAATTTTT-
* * *
28585245 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACAT
128 GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
28585310 TTGGTCTTTGAATTAAAATCTTA
193 TTGGTCTTTGAATTAAAATCTTA
* *
28585333 TTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTATCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * *
28585398 GTTCTTTTATAACTTCGGA-TCATTAAAGTATTCAAGATGATCCATTCCTTCGATCAATTTTTTG
66 GTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTG
* * * * *
28585462 AATATTCCATGCTTGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATGTTT-TAAA-AAGGT
129 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAA-CT
* *
28585525 TTTGGTCTTTGGATTGAAAA-CATA
192 TTTGGTCTTTGAATT-AAAATCTTA
* * * *
28585549 TTTAGGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACTTTTGAAT-TTGTCAAACTTTTACG
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCG-ATCTTGTCAAACTTTTACG
** ** * * * * *
28585613 AGTTCTTTTTATCGCTTTTATTCGTTAAAGTACTT-AAGACTATCCATTCCTTCAAGTAAATTTC
65 AGTTC-TTTTATAACTTCGATTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAG-CAATTTT
** * ** *
28585677 CAAACATCCCATGCTCGGGAAATTGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACA
127 TGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-
28585742 TTTT-GTCTTTG--TTAAAATCTTA
191 TTTTGGTCTTTGAATTAAAATCTTA
* * *
28585764 TTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACAA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * *
28585829 GTTCTATTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTCTGA
66 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGA
* * * * *
28585894 ATATTCGATGCTCGTGAAAT-AGCATCATTTGGTCTAAATAGTTTCTCATTTTTTAAAC
130 ACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
28585952 TTATTTATGT
Statistics
Matches: 2736, Mismatches: 380, Indels: 161
0.83 0.12 0.05
Matches are distributed among these distances:
207 29 0.01
208 130 0.05
209 1 0.00
211 5 0.00
212 12 0.00
213 139 0.05
214 352 0.13
215 754 0.28
216 1047 0.38
217 210 0.08
218 55 0.02
219 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAA
CATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
GTCTTTGAATTAAAATCTTA
Found at i:28585066 original size:431 final size:430
Alignment explanation
Indices: 28582541--28588685 Score: 6614
Period size: 431 Copynumber: 14.4 Consensus size: 430
28582531 GTTTCTCATT
* * * * *
28582541 TTTATGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAACTTTTATGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * *** * * **
28582606 GTTCTTTTAAAACTTCAGTTCCTTAAAGTATTGACGGTTATACTTTCCTTTGAGCAATTTTTCGA
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTT-GA
* * * * * * * *
28582671 ACAATACTTGCTTGGGAAATCGCATCATTCGATTTAAATAG-TAGTCATTTTGTAAACAAGT-TT
130 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TATT
* * *
28582734 TGGTCTTT-AATTTAAACA-CTTACTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT
194 TGGTCTTTGAA-TTAAA-ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * **
28582797 TTTGATCTTGTCAAACTTTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAAT
257 TCCGATCTTGTCAAAC--TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * *
28582862 ATCCATTCCTACCAAG-AATTTTTTGAACATTCCATGCTCGGGAAATCATATTATTTGGTTTAAA
320 ATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
* *
28582926 TAGTTTGTCATTTTGTAAAAAAGTTTTGGTGTTTGAATTAAAATCTTA
384 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-CTTA
* * * * * *
28582974 TGTA--TGAGAATGATTTCTTTCTTGGTTGTTGGACGAAC-TTCGAACTTTTCAAAATTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * * **
28583036 GTTCTTTTATAACTTTGGTTCCGTAAAGTATTCAAGACGATTCATTCCTTCCAA-CAACTTTCCA
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTT-CAAGCAATTTTTGA
* *
28583100 AGCATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATT
130 A-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATATT
* * * * * *
28583165 TGGACTTTGAATTAAAATCTCATTTACGTTAGAATTCTTTCTCTCTTGGTTTTTGGACGAACTTT
194 TGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* ** *
28583230 CGA--TTGTCAAACTTTTACTAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAAACGATCC
259 CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* *
28583293 ATTCCTTCGAGCAATTTTTTGAACAGTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTT
324 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTT
**
28583358 TGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTA
389 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-CTTA
* * *
28583401 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGAACAAACTTTCGATCTTGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * *
28583466 GTTCTTTTATAACTTCGATTCCTTAAAGTAATGAAGACGATCTATTCCTTCGAGCAATTTTTGAA
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTTGAA
*
28583531 CATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT-TTT
131 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TATTT
* * * *
28583595 GGTGTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC
195 GGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
** * * * *
28583660 GAAATTGT-AAACTTTTACGAGTTATTTTATAACTTCTGTTCATTAAAGTATAT-AAGAAGATCC
260 GATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT-TCAAGACGATCC
* * * ** ** *
28583723 ATTCCTTCAAGAAATTTTTAGAACATTCCATGCTCAAGAAATTGCATCATTTGGTCTAAATCGTT
324 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTT
* ** *
28583788 AGTCATTTTGTAAACAACATTTGGTCCTTGAATTAAAATCTTA
389 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-CTTA
* * * *
28583831 TTTACGTGATAATTATTTCTCTCTTGGTTCTTGGACAAACTTTCGATCTTATCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
28583896 GTTCTTTTATAACTTCGG-ACCATTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTTG
66 GTTCTTTTATAACTTCGGTTCC-TTAAAGTATTTAAGACGATCCATTCCTTCAAGCAA-TTTTTG
* * * * **
28583960 AATATTCCATGCTCGTGAAATAGCATCATTTGGTCTAAATAGTTTCTCATCTTT-TAAACAAGGT
129 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAATAT
* * * * * * *
28584024 TTAGTCTTTGGATGAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTT
193 TTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
28584089 CCGAACTTGTCAAACTTTTACAAGTTCTTTTAGAACTTCGGTTCCTTAAAGTATT-AGAGACAAT
258 CCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGAT
* * * ** * *
28584153 CCATTCCTTTGATCAA-TTTTCTGAATATTCCATGCTCATGAAATCGCATCATTTAGTCTAAATA
322 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* * * *
28584217 GTTTTTCATATTT-TAAAAAAGTTTTGGTCCTTGGATTAAAAACTTA
386 GTTTGTCAT-TTTGTAAACAAGTTTTGGTCTTTGAATT-AAAACTTA
* * * * * * *
28584263 TTTATC-TAAGAATTGTTTCTCTCTTGGATCTTGAATGAACTGTCGAATTTGTCAAACTTTTACG
1 TTTA-CGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACG
** *** * * *
28584327 AGTTCTTTTATCGCTTTTCTTCGTTAAAGTTTTTAAGAC--T--A-T-C--CATGCAATTTTTCG
65 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTT-G
* * * * *
28584384 AACATTCCATGCTTGAGAAATCACATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACATT
129 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATATT
* * * * *
28584449 TGGTCTATGAATTAAAATCTTATGTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTT
194 TGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * *
28584514 CGATCTTGTCAAACTATTACAAGTTC-ATTATAAATTCGGTTCCTTACAGTATTCAAGACGATCC
259 CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
** * * * * **
28584578 ATTCCTTCGATTAATTTTTTGAATATTCCATGCTAGTGAAATTGCATCATTTGGTCTAAATAGTT
324 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTT
* * * *
28584643 TCTCATTTTTTAAACAAGGTTTGGTCTTTGGATTACAAACTTA
389 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAACTTA
*
28584686 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
** *
28584751 GTTCTTTTATAACTTTTGTTCGTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTCTGA
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTT-TGA
* * * **
28584816 GCATTCCATGCTCGGAAAATCGCATCATTTGGTCT-AATCGTTTACCATTTTGTAAACAATATTT
130 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATATTT
*
28584880 GGTCTTTGAATTAAAATCTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
195 GGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
* * *
28584945 GATCTTGTCAAACTTTTACGCGTTCTTTTATAACTTCGGTTCCTTAAAGTAATGAAGACGATCCA
260 GATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
28585010 TTCCTTCGAGCAATTTTTCAAACATTCCATGCTTGGAAAATCACATCATTTGGTCTAAATAGTTT
325 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTT
* *
28585075 GTCATTTTGTAAACAACTTTTGGTGTTTGAATTAAAAACTTA
390 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAACTTA
* * *
28585117 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTCGATCTTGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * *
28585182 GTTCTTTTATAACTTCTGTTCATTAAAGTATATAAGATGATCCATTCCTTCAAGTAATTTTTAGA
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTT-GA
* *
28585247 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACATTT
130 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATATTT
* * *
28585312 GGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTC
195 GGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
* * * *
28585377 GATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCGGATCATTAAAGTATTCAAGATGATCCA
260 GATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
28585442 TTCCTTCGATCAATTTTTTGAATATTCCATGCTTGTGAAATCGCATCATTTGGTCTAAATAGTTT
325 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTT
* *
28585507 GTCATGTTT-TAAA-AAGGTTTTGGTCTTTGGATTGAAAACATA
390 GTCAT-TTTGTAAACAA-GTTTTGGTCTTTGAATT-AAAACTTA
* * * * *
28585549 TTTAGGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACTTTTGAATTTGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
** *** * * * * ***
28585614 GTTCTTTTTATCGCTTTTATTCGTTAAAGTACTTAAGACTATCCATTCCTTCAAGTAAATTTCCA
66 GTTC-TTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAG-CAATTTTTG
* * * *
28585679 AACATCCCATGCTCGGGAAATTGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACATT
129 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATATT
* * *
28585744 TTGTCTTTG--TTAAAATCTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTC
194 TGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * *
28585807 CGATCTTGTCAAACTTTTACAAGTTCTATTATAACTTTGATTCCTTAAAGTATTCAAGACGATCC
259 CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
28585872 ATTCCTTCGATCAA-TTTTCTGAATATTCGATGCTCGTGAAAT-AGCATCATTTGGTCTAAATAG
324 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAATAG
28585935 -TT-TC------T---C-A-------T-TTT---TT-AAACTTA
387 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAACTTA
* * * * *
28585955 TTTATGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGCCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* ** * *
28586020 GTTCTTTTATAACTTCGATTCCTTAAAGTA-TTAGAGAAAATCCATTCCTTCGATCAATTTTCTG
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTA-AGACGATCCATTCCTTCAAGCAATTTT-TG
* ** *** * * *
28586084 AATATTCCATTTTCATAAAATCGCATCATTTTGTCTAAATAGTTTGTCATATTT-TAAAAAAAAT
129 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAATAT
* * * * *
28586148 TCGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTTGACG-A---
193 TTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * *
28586209 ---A-CTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACAATC
258 CCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* * * *
28586270 CATTCCTTCGAGCAATTTTCCAAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
323 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGT
*
28586335 TTGTCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTA
388 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-CTTA
* * * * *
28586379 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTGCTA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * * *
28586444 GTTCTTTTATAACTTCGGTTCCTTAAACTATTCAAGATGATACATTCCCTCGAGCAATTTTTTGA
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAA-TTTTTGA
* * * * * * *
28586509 ACAATACTTGCTAGGGAAATCACATCATTTGATCTAAATAG-TTGTCATTTTGTACACAAGT-TT
130 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TATT
* * *
28586572 TGGTCTTTAAATTAGAAA-CTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAGCTT
194 TGGTCTTTGAATTA-AAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * * *
28586636 TCGACCTTGTTAAACATTTACGAGTTCTTTTATAACTTTGGTTTCATACAA-TATTAAAGACGAT
258 CCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGAT
* * * * *
28586700 CCATTCCTTCTAACAATTTTTCGAACATGCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAG
322 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAG
* *
28586765 TTTGTCATTTTGTAAACAAGTTTTGCTGTTTGAATTAAAATCTTA
387 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-CTTA
* * * *
28586810 TTT-CTGTGAGGATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACCTGTCAAACTTTTACG
1 TTTAC-GTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACG
* *
28586874 AGTT-TTGTTATAACTTCGGTTCCGTAAAGTATTTAAGATGATCCATTCCTTCCAA-CAATTTTT
65 AGTTCTT-TTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTT-CAAGCAATTTTT
* * ** * *
28586937 CGAGCATTCCATGCTC-GAAAATATCATCATTTGGTCTAAATAGTTTGTCATTTTGGAAACAACA
128 -GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATA
* * * * * *
28587001 TTTGGTCTTTGAATTAAAATCTCATTTACATGATAATTCTTTCTCTCTTGTTTCTTGGACAAACT
192 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28587066 TCCAATCTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAACTATTCAAGATGAT
257 TCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* *
28587131 CCATTCCTTCGAGCAATTTTTCGAACATTCCCTGCTTGGGAAAT-ATCATCATTTGGTCTAAATA
322 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAATA
* * * *
28587195 GTTTGTCATTTTGTAAAAAAGTTTTGCTGTTTTAATTAAAATCTTA
386 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-CTTA
* * * * *
28587241 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAAC-TTCTGAACTTGTCAGACTTTTACA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACG
* ** * * * * * *
28587305 AGTTCATTTATAACTTCGGTTTATTAAAGTATTCAAGATGATACTTTCCCTCGAGCAATTTTTTG
65 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAA-TTTTTG
* * * * **
28587370 AACATTCCCTGCTCTGGAGATTGCATCATTTCATCTAAATAG-TTGTCATTTTGTAAACAAGT-T
129 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TAT
* * * * * *
28587433 TCGGTCTTTAAATTAAAAACTTATTTGCGTGAGAATTGTTTCTCCCTTGGTTCCTGGACGAA-TT
193 TTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
28587497 ----TC----CAAA--TTT----G-TC----A-AACTT---TTAC---AAGTAATGACGACGATC
258 CCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* *
28587536 CATTCCTTTGAGCAA-TTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTGGTGTAAATAG
323 CATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAG
* * *
28587600 TTTGTTATTTTGTAAACAAGTTTTTGTTTTTGAATTAAAAACTTA
387 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAACTTA
* * * *
28587645 TTTACGTGAGAATTATTTCTCTCTTGGTTGTTGGATGAAATTTCGAACTTGTTAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
28587710 GTTCTTTTATAACTTCTGTTCGTTAAAGTATTTAAGACAATCCATTCTTTCAAGCAATTTTTCGA
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTT-GA
*
28587775 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACT-TT
130 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TATT
* * * * * *
28587839 TGG-CATTTGAATTAAAATCTTATATGCGTGAGAATTATTTCCCTCCTGGTTCTTGGATGAACTT
194 TGGTC-TTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * ** * * * * *
28587903 CTGAACTCATCATACTTTTATGAGTTCTTTTTTAACTTTGGTTCCCTAAAGTATTCAAGACGATC
258 CCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* * *
28587968 CATTCCTTCCAGCAA-TTTTCTGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
323 CATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAG
* ** **
28588032 TTTGTCATTTTGGAAACAACATTTGGTCTTTGAATTAAGATTTTA
387 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA-AACTTA
*
28588077 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTTC-AATCTTGTCAAACTTTT--G
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAA-CTTGTCAAACTTTTACG
* * * * *
28588139 AGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATACTTTCCCTCAAGCAATTTTTCG
65 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTT-G
* * ** * * *
28588204 AACATTCCTTACTCGGGAAATTACACCATTTGATCTAAATAG-TTGTCATTTTGTATACAAGT-T
129 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TAT
*
28588267 TTGGTCTTTAAATTAATAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
193 TTGGTCTTTGAATTAA-AATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28588331 TCTGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTCCTTAATGTATT-AGAGACAA
257 TCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGA
* * * * **
28588395 TCCGTTCCTTCGATCAATTTTT-GAA-ATTTTCCATGCTTGTGAAATTGCATCATTTGGTCTAAA
321 TCCATTCCTTCGAGCAATTTTTCGAACA--TTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
* * * *
28588458 TAGTTTGTCATTTTTTAAACAACTTTTGGTCTTTGAGTT-AATCTTA
384 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAACTTA
* * *
28588504 TTTACATGAGAATTATTTCTCTCTTGGATCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
1 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * * * * * * * *
28588569 CTTCTTTCATCACTTCGATTCCATAAAGTATTCAACACGATCTATTCCTTCCAGAAATATTCTGA
66 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAAT-TTTTGA
* * ** ** * *
28588634 ACACTCAATGCTTAGGAAATCATATCATTTGGTTTAAATAGTTTCTCATTTT
130 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
28588686 TACGTGAGAA
Statistics
Matches: 4854, Mismatches: 696, Indels: 327
0.83 0.12 0.06
Matches are distributed among these distances:
399 105 0.02
400 7 0.00
401 2 0.00
403 10 0.00
404 242 0.05
405 171 0.04
406 72 0.01
407 49 0.01
408 2 0.00
410 7 0.00
411 5 0.00
412 1 0.00
414 3 0.00
415 2 0.00
416 4 0.00
418 1 0.00
419 3 0.00
420 5 0.00
421 2 0.00
422 14 0.00
423 281 0.06
424 282 0.06
425 7 0.00
426 11 0.00
427 204 0.04
428 7 0.00
429 454 0.09
430 695 0.14
431 1375 0.28
432 699 0.14
433 127 0.03
434 5 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (430 bp):
TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTTGAA
CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATATTTG
GTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCG
ATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTG
TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAACTTA
Found at i:28586084 original size:191 final size:191
Alignment explanation
Indices: 28585760--28586141 Score: 568
Period size: 191 Copynumber: 2.0 Consensus size: 191
28585750 TTGTTAAAAT
* * * *
28585760 CTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTT
1 CTTATTTACGTGAAAATTATTTCCCTCTTGGTTCTTGGACGAACTTCCGAACTAGCCAAACTTTT
* **
28585825 ACAAGTTCTATTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTT
66 ACAAGTTCTATTATAACTTCGATTCCTTAAAGTATTCAAGAAAATCCATTCCTTCGATCAATTTT
* * * *
28585890 CTGAATATTCGATGCTCGTGAAATAGCATCATTTGGTCTAAATAGTTTCTCATTTTTTAAA
131 CTGAATATTCCATGCTCATAAAATAGCATCATTTGGTCTAAATAGTTTCTCATATTTTAAA
* *
28585951 CTTATTTATGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGCCAAACTTTT
1 CTTATTTACGTGAAAATTATTTCCCTCTTGGTTCTTGGACGAACTTCCGAACTAGCCAAACTTTT
* *
28586016 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AGAGAAAATCCATTCCTTCGATCAATTT
66 ACAAGTTCTATTATAACTTCGATTCCTTAAAGTATTCA-AGAAAATCCATTCCTTCGATCAATTT
** * * *
28586080 TCTGAATATTCCATTTTCATAAAATCGCATCATTTTGTCTAAATAGTTTGTCATATTTTAAA
130 TCTGAATATTCCATGCTCATAAAATAGCATCATTTGGTCTAAATAGTTTCTCATATTTTAAA
28586142 AAAAATTCGG
Statistics
Matches: 170, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
190 1 0.01
191 169 0.99
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (191 bp):
CTTATTTACGTGAAAATTATTTCCCTCTTGGTTCTTGGACGAACTTCCGAACTAGCCAAACTTTT
ACAAGTTCTATTATAACTTCGATTCCTTAAAGTATTCAAGAAAATCCATTCCTTCGATCAATTTT
CTGAATATTCCATGCTCATAAAATAGCATCATTTGGTCTAAATAGTTTCTCATATTTTAAA
Found at i:28586665 original size:215 final size:216
Alignment explanation
Indices: 28585951--28587518 Score: 1778
Period size: 216 Copynumber: 7.3 Consensus size: 216
28585941 ATTTTTTAAA
* * * * * *
28585951 CTTATTTATGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGCCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* ** *
28586016 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AGAGAAAATCCATTCCTTCGATCAA-TT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGATGATCCATTCCTTCGAGCAATTT
* ** *** * * *
28586079 TTCTGAATATTCCATTTTCATAAAATCGCATCATTTTGTCTAAATAGTTTGTCATATTT-TAAAA
130 TTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAAC
** * * *
28586143 AAAATTCGGTCTTTGGATTAAAAA
193 AAGTTTTGGTCTTTGAATTAAAAT
* *
28586167 CTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTT---TG-A----CGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * **
28586224 ACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
* * * *
28586289 CCAAACAATCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
131 TCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
28586354 TTTTGGTGTTTGAATTAAAAT
196 TTTTGGTCTTTGAATTAAAAT
* *
28586375 CTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * *
28586440 GCTAGTTCTTTTATAACTTCGGTTCCTTAAACTATTCAAGATGATACATTCCCTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
* * * * * * *
28586505 TTGAACAATACTTGCTAGGGAAATCACATCATTTGATCTAAATAG-TTGTCATTTTGTACACAAG
131 TCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
28586569 TTTTGGTCTTTAAATTAGAAA-
196 TTTTGGTCTTTGAATTA-AAAT
* * * * *
28586590 CTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAGCTTTCGACCTTGTTAAACATTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * * *
28586655 ACGAGTTCTTTTATAACTTTGGTTTCATACAA-TATTAAAGACGATCCATTCCTTCTAACAATTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGATGATCCATTCCTTCGAGCAATTT
* * *
28586719 TTCGAACATGCCATGCTCGGGAAGTCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAA
130 TTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
28586784 GTTTTGCTGTTTGAATTAAAAT
195 GTTTTGGTCTTTGAATTAAAAT
* * *
28586806 CTTATTT-CTGTGAGGATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACCTGTCAAACTTT
1 CTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTT
* * * *
28586870 TACGAGTT-TTGTTATAACTTCGGTTCCGTAAAGTATTTAAGATGATCCATTCCTTCCAACAATT
65 TACGAGTTCTT-TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATT
* * *
28586934 TTTCGAGCATTCCATGCTC-GAAAAT-ATCATCATTTGGTCTAAATAGTTTGTCATTTTGGAAAC
129 TTTCGAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
**
28586997 AACATTTGGTCTTTGAATTAAAAT
193 AAGTTTTGGTCTTTGAATTAAAAT
* * * * * * *
28587021 CTCATTTACATGATAATTCTTTCTCTCTTGTTTCTTGGACAAAC-TTCCAATCTTGTCAAACTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAA-CTTGTCAAACTTT
* * *
28587085 TACGAGTTCCTTTATAACTTTGGTTCCTTAAACTATTCAAGATGATCCATTCCTTCGAGCAATTT
65 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT
* * *
28587150 TTCGAACATTCCCTGCTTGGGAAAT-ATCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAA
130 TTCGAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * *
28587214 AGTTTTGCTGTTTTAATTAAAAT
194 AGTTTTGGTCTTTGAATTAAAAT
* * *
28587237 CTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAAC-TTCTGAACTTGTCAGACTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTT
* * ** * * *
28587301 TACAAGTTCATTTATAACTTCGGTTTATTAAAGTATTCAAGATGATACTTTCCCTCGAGCAATTT
65 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT
* * * * ** **
28587366 TTTGAACATTCCCTGCTCTGGAGATTGCATCATTTCATCTAAATAG-TTGTCATTTTGTAAACAA
130 TTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * *
28587430 GTTTCGGTCTTTAAATTAAAAA
195 GTTTTGGTCTTTGAATTAAAAT
* * * * *
28587452 CTTATTTGCGTGAGAATTGTTTCTCCCTTGGTTCCTGGACGAA-TTTCCAAATTTGTCAAACTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT-CGAACTTGTCAAACTTT
28587516 TAC
65 TAC
28587519 AAGTAATGAC
Statistics
Matches: 1150, Mismatches: 175, Indels: 55
0.83 0.13 0.04
Matches are distributed among these distances:
207 3 0.00
208 168 0.15
209 5 0.00
211 1 0.00
212 2 0.00
213 1 0.00
214 6 0.01
215 451 0.39
216 511 0.44
217 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
TCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGTCTTTGAATTAAAAT
Found at i:28587704 original size:189 final size:188
Alignment explanation
Indices: 28587357--28587707 Score: 470
Period size: 189 Copynumber: 1.9 Consensus size: 188
28587347 ACTTTCCCTC
* * * * **
28587357 GAGCAATTTTTTGAACATTCCCTGCTCTGGAGATTGCATCATTTCATCTAAATAGTTGTCATTTT
1 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTCATCTAAATAGTTGTCATTTT
* *
28587422 GTAAACAAGTTTCGGTCTTTAAATTAAAAACTTATTTGCGTGAGAATTGTTTCTCCCTTGGTTCC
66 GTAAACAAGTTTCGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCCCTTGGTTCC
*
28587487 TGGACGAATTTCCAAATTTGTCAAACTTTTACAAGTAATGACGACGATCCATTCCTTT
131 TGGACGAATTTCCAAACTTGTCAAACTTTTACAAGTAATGACGACGATCCATTCCTTT
** * *
28587545 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTGGTGTAAATAGTTTGTTATTT
1 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTCATCTAAATAG-TTGTCATTT
** * * * *
28587610 TGTAAACAAGTTTTTGTTTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTG
65 TGTAAACAAGTTTCGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCCCTTGGTTC
* * * *
28587675 TTGGATGAAATTT-CGAACTTGTTAAACTTTTAC
130 CTGGACG-AATTTCCAAACTTGTCAAACTTTTAC
28587708 GAGTTCTTTT
Statistics
Matches: 138, Mismatches: 23, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
188 46 0.33
189 87 0.63
190 5 0.04
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (188 bp):
GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTCATCTAAATAGTTGTCATTTT
GTAAACAAGTTTCGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCCCTTGGTTCC
TGGACGAATTTCCAAACTTGTCAAACTTTTACAAGTAATGACGACGATCCATTCCTTT
Found at i:28587922 original size:216 final size:215
Alignment explanation
Indices: 28587533--28588685 Score: 1319
Period size: 216 Copynumber: 5.4 Consensus size: 215
28587523 AATGACGACG
** * *
28587533 ATCCATTCCTTTGAGCAA-TTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTGGTGTAAA
1 ATCCATTCCTTCAAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * * *
28587597 TAGTTTGTTATTTTGTAAACAAGTTTTTGTTTTTGAATTAAAAACTTATTTACGTGAGAATTATT
65 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATT
* * *
28587662 TCTCTCTTGGTTGTTGGATGAAATTTCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTCT
130 TCTCTCTTGGTTCTTGGATGAACTTT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT
* *
28587727 GTTCGTTAAAGTATTTAAGACA
194 GTTCCTTAAAGTATTCAAGACA
*
28587749 ATCCATTCTTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
1 ATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
28587814 CGTTTGTCATTTTGTAAACAACTTTTGG-CATTTGAATTAAAATCTTATATGCGTGAGAATTATT
66 AGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAATCTTATTTACGTGAGAATTATT
* * ** * * *
28587878 TCCCTCCTGGTTCTTGGATGAACTTCTGAACTCATCATACTTTTATGAGTTCTTTTTTAACTT-T
130 TCTCTCTTGGTTCTTGGATGAACTT-TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT
* *
28587942 GGTTCCCTAAAGTATTCAAGACG
194 -GTTCCTTAAAGTATTCAAGACA
* *
28587965 ATCCATTCCTTCCAGCAA-TTTTCTGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
1 ATCCATTCCTTCAAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * *
28588029 TAGTTTGTCATTTTGGAAACAACATTTGGTCTTTGAATTAAGATTTTATTTACGTGAGAATTATT
65 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATT
* *
28588094 TCTCTCTTGGTTCTTGGATGAACTTTCAATCTTGTCAAACTTTT--GAGTTCTTTTATAACTTCA
130 TCTCTCTTGGTTCTTGGATGAACTTTGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT
*
28588157 GTTCCTTAAAGTATTCAAGACG
194 GTTCCTTAAAGTATTCAAGACA
* * * * * ** * *
28588179 ATACTTTCCCTCAAGCAATTTTTCGAACATTCCTTACTCGGGAAATTACACCATTTGATCTAAAT
1 ATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * *
28588244 AG-TTGTCATTTTGTATACAAGTTTTGGTCTTTAAATTAATAA-CTTATTTACGTGAGAATTGTT
66 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA-AATCTTATTTACGTGAGAATTATT
* * *
28588307 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTCG
130 TCTCTCTTGGTTCTTGGATGAACTT-TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT
*
28588372 GTTCCTTAATGTATT-AGAGACA
194 GTTCCTTAAAGTATTCA-AGACA
* * * * * *
28588394 ATCCGTTCCTTCGATCAATTTTT-GAA-ATTTTCCATGCTTGTGAAATTGCATCATTTGGTCTAA
1 ATCCATTCCTTCAAGCAATTTTTCGAACA--TTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *
28588457 ATAGTTTGTCATTTTTTAAACAACTTTTGGTCTTTGAGTT--AATCTTATTTACATGAGAATTAT
64 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTAT
* * * * * *
28588520 TTCTCTCTTGGATCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGACTTCTTTCATCACTTC
129 TTCTCTCTTGGTTCTTGGATGAACTTT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * *
28588585 -GATTCCATAAAGTATTCAACACG
193 TG-TTCCTTAAAGTATTCAAGACA
* * * * * * ** ** *
28588608 ATCTATTCCTTCCAG-AAATATTCTGAACACTCAATGCTTAGGAAATCATATCATTTGGTTTAAA
1 ATCCATTCCTTCAAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
*
28588672 TAGTTTCTCATTTT
65 TAGTTTGTCATTTT
28588686 TACGTGAGAA
Statistics
Matches: 798, Mismatches: 115, Indels: 50
0.83 0.12 0.05
Matches are distributed among these distances:
213 98 0.12
214 236 0.30
215 103 0.13
216 354 0.44
217 7 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (215 bp):
ATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTT
CTCTCTTGGTTCTTGGATGAACTTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGT
TCCTTAAAGTATTCAAGACA
Found at i:28588674 original size:429 final size:431
Alignment explanation
Indices: 28587533--28588685 Score: 1416
Period size: 429 Copynumber: 2.7 Consensus size: 431
28587523 AATGACGACG
** * *
28587533 ATCCATTCCTTTGAGCAATTTTCTGA-ACATTCCATGCTCGGGAAATCACATCATTTGGTGTAAA
1 ATCCATTCCTTCCAGCAATTTTCTGAGA-ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * * *
28587597 TAGTTTGTTATTTTGTAAACAAGTTTTTGTTTTTGAATTAAAAACTTATTTACGTGAGAATTATT
65 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAATCTTATTTACGTGAGAATTATT
* * * *
28587662 TCTCTCTTGGTTGTTGGATGAAATTTCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTCT
129 TCTCTCTTGGTTCTTGGATGAACTTTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-
* * * * *
28587727 G-TTCGTTAAAGTATTTAAGACAATCCATTCTTTCAAGCAATTTTTCGAACATTCCATGCTCGGG
193 GATTCCTTAAAGTATTCAAGACGATCTATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGG
* * *
28587791 AAATCGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAACTTTTGGCATTTGAATTAAAA
258 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGCATTTAAATTAAAA
* * * *
28587856 TCTTATATGCGTGAGAATTATTTCCCTCCTGGTTCTTGGATGAACTTCTGAACTCATCATACTTT
323 TCTTATATACGTGAGAATTATTTCCCTCCTGGTTCTTGGACGAACTTCTGAACTCATCAAAATTT
* * * *
28587921 TATGAGTTCTTTTTTAACTTTGGTTCCCTAAAGTATTCAAGACG
388 TACGAGTTCTTTTATAACTTCGGTTCCCTAAAGTATTCAAGACA
*
28587965 ATCCATTCCTTCCAGCAATTTTCTGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
1 ATCCATTCCTTCCAGCAATTTTCTGAGAATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
28588030 AGTTTGTCATTTTGGAAACAACATTTGGTCTTTGAATTAAGATTTTATTTACGTGAGAATTATTT
66 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA-ATCTTATTTACGTGAGAATTATTT
*
28588095 CTCTCTTGGTTCTTGGATGAACTTTCAATCTTGTCAAACTTTT--GAGTTCTTTTATAACTTC-A
130 CTCTCTTGGTTCTTGGATGAACTTTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA
* * *
28588157 GTTCCTTAAAGTATTCAAGACGATACT-TTCCCTCAAGCAATTTTTCGAACATTCCTTACTCGGG
195 -TTCCTTAAAGTATTCAAGACGAT-CTATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGG
* * * * *
28588221 AAATTACACCATTTGATCTAAATAG-TTGTCATTTTGTATACAAGTTTTGGTC-TTTAAATTAAT
258 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG-CATTTAAATTAA-
* * * * **
28588284 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAT
321 AATCTTATATACGTGAGAATTATTTCCCTCCTGGTTCTTGGACGAACTTCTGAACTCATCAAAAT
* *
28588348 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAATGTATT-AGAGACA
386 TTTACGAGTTCTTTTATAACTTCGGTTCCCTAAAGTATTCA-AGACA
* * * * * *
28588394 ATCCGTTCCTTCGATCAATTTT-TGA-AATTTTCCATGCTTGTGAAATTGCATCATTTGGTCTAA
1 ATCCATTCCTTCCAGCAATTTTCTGAGAA--TTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *
28588457 ATAGTTTGTCATTTTTTAAACAACTTTTGGTCTTTGAGTT-AATCTTATTTACATGAGAATTATT
64 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATCTTATTTACGTGAGAATTATT
* * * * *
28588521 TCTCTCTTGGATCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGACTTCTTTCATCACTTCG
129 TCTCTCTTGGTTCTTGGATGAACTTTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * * **
28588586 ATTCCATAAAGTATTCAACACGATCTATTCCTTCCAG-AAATATTCTGAACACTCAATGCTTAGG
194 ATTCCTTAAAGTATTCAAGACGATCTATTCCTTCAAGCAATTTTTC-GAACATTCCATGCTCGGG
* * *
28588650 AAATCATATCATTTGGTTTAAATAGTTTCTCATTTT
258 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTT
28588686 TACGTGAGAA
Statistics
Matches: 618, Mismatches: 87, Indels: 34
0.84 0.12 0.05
Matches are distributed among these distances:
427 63 0.10
428 13 0.02
429 284 0.46
430 104 0.17
431 3 0.00
432 151 0.24
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (431 bp):
ATCCATTCCTTCCAGCAATTTTCTGAGAATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATCTTATTTACGTGAGAATTATTTC
TCTCTTGGTTCTTGGATGAACTTTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAT
TCCTTAAAGTATTCAAGACGATCTATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAA
TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGCATTTAAATTAAAATCT
TATATACGTGAGAATTATTTCCCTCCTGGTTCTTGGACGAACTTCTGAACTCATCAAAATTTTAC
GAGTTCTTTTATAACTTCGGTTCCCTAAAGTATTCAAGACA
Found at i:28588854 original size:180 final size:179
Alignment explanation
Indices: 28588504--28588864 Score: 426
Period size: 180 Copynumber: 2.0 Consensus size: 179
28588494 GTTAATCTTA
* *
28588504 TTTACATGAGAATTATTTCTCTCTTGGATCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
1 TTTACATGAGAATTATTTCTCTCTTGGATCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGA
* *
28588569 CTTCTTTCATCACTTCGATTCCATAAAGTATTCAACACGATCTATTCCTTCCAGAAATATTCTGA
66 CTTCTTTCATAACTTCGATTCCATAAAGTATTCAACACGATCTATTCCTTCCAGAAATATTCCGA
* * *
28588634 ACACTCAATGCTTAGGAAATCATATCATTTGGTTTAAATAGTTTCTCATT
131 ACAATCAATGCTTAGGAAATCATATCATTTGATCTAAATAG-TTCTCATT
* * * * *
28588684 TTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGACGAACTTTCAAACTTGTCAAACTTTTATGA
1 TTTACATGAGAATTATTTCTCTCTTGGATCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGA
* * * * * * * *
28588749 TTTCTTTTATAACTTC-AGTTCCTTAAAGTATTGAAGACGATACT-TTCCTTCGAGCAATTTTCC
66 CTTCTTTCATAACTTCGA-TTCCATAAAGTATTCAACACGAT-CTATTCCTTCCAGAAATATTCC
* * *
28588812 GAACAAT-ACTCGCTTGGGAAATTGCAT-T-ATTTGATCTAAATAGTTGTCATT
129 GAACAATCAAT-GCTTAGGAAA-T-CATATCATTTGATCTAAATAGTTCTCATT
28588863 TT
1 TT
28588865 GTAAACAAGT
Statistics
Matches: 153, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
179 12 0.08
180 134 0.88
181 4 0.03
182 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (179 bp):
TTTACATGAGAATTATTTCTCTCTTGGATCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGA
CTTCTTTCATAACTTCGATTCCATAAAGTATTCAACACGATCTATTCCTTCCAGAAATATTCCGA
ACAATCAATGCTTAGGAAATCATATCATTTGATCTAAATAGTTCTCATT
Found at i:28590355 original size:433 final size:432
Alignment explanation
Indices: 28589433--28590518 Score: 1421
Period size: 433 Copynumber: 2.5 Consensus size: 432
28589423 AAGGCGATCC
* * *
28589433 ATTTTTCGAACATTCCATGCTTAGGAAATCACATCATTTGGTCTAAATAATTTGTCATTTTGTAA
1 ATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
28589498 AAAAGT-TTTGCTGTTTTAATTAAAATCTTATTTATGTGAGTATT-GTTTCTCTCTTGGTTCTTG
66 ACAA-TATTTGCTCTTTGAATTAAAATCTTATTTACGTGAGAATTAG-TTCTCTCTTGGTTCTTG
* * *** * *
28589561 GACGAACTTCTGAA-CTTGTCAAACTTTTACGAGTTCATTTATAACTTTGGTTCCTTAAATTATT
129 GACGAACTT-TCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAGTAAT
* * * *
28589625 CAAGACGATACTTTCCCTCGATCAATTTTCAAAACATTCCTTGCTTCAAAAATCACATCATTTGA
193 AAAGACGATACATTCCCTCGAGCAATTTTCAAAACATTCCATGCTTCAAAAATCACATCATTTGA
* *
28589690 TCTAAATAGTTTTCATTTTGTAAAGAAGTTTTGGTCTTTAACTTAAAAACCTATTTACGTGAGAA
258 TCTAAATAGTTTTCATTTTGTAAAAAACTTTTGGTCTTTAACTTAAAAACCTATTTACGTGAGAA
* *
28589755 TTGTTTCTCTCTTGGTACTTGGATGAACTTTCGAACTTGTCAAACCTTTTACGAGTTCTTTTATA
323 TTGTTTCTCTCTTGGTACATGGACGAACTTTCGAACTTGTCAAACCTTTTACGAGTTCTTTTATA
* * *
28589820 ACTTTGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCCAGTA
388 ACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA
* * **
28589865 ATTTTCCGAGCATTCCATGCTCAGGAAATCGCATCATTTGGGATAAATAGTTTGTCATTTTGTAA
1 ATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
*
28589930 ACAATATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTAGTTCTCTCTTGGTTCTTGGA
66 ACAATATTTGCTCTTTGAATTAAAATCTTATTTACGTGAGAATTAGTTCTCTCTTGGTTCTTGGA
*
28589995 CGAACTTTCAATCTTGTCAAACTTTTACTAGTTCTTTTATAACTTCAATTCCTTAAAGTAATAAA
131 CGAACTTTCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAGTAATAAA
* * * * * ** *** * * *
28590060 GATGATCCATTCCTTTGAGCTATTTTCCGAACATTCCATGCTTGGGAAATCACATTATTTGGTTT
196 GACGATACATTCCCTCGAGCAATTTTCAAAACATTCCATGCTTCAAAAATCACATCATTTGATCT
* *
28590125 AAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAA-TTAAAAACTTATTTACTTGAGAAT
261 AAATAGTTT-TCATTTTGTAAAAAACTTTTGGTCTTT-AACTTAAAAACCTATTTACGTGAGAAT
* * *
28590189 TGTTTCTCTCTTGGTTCATGGACGAACTTTCGTACTTGTCAAA-CTTTTATGAGTTCTTTTATAA
324 TGTTTCTCTCTTGGTACATGGACGAACTTTCGAACTTGTCAAACCTTTTACGAGTTCTTTTATAA
* ** *
28590253 CTTTTGTTTGTTAAAAGTATAT-AAGATGATCCATTCCTTCAAGCA
389 CTTTGGTTCCTT-AAAGTAT-TCAAGACGATCCATTCCTTCAAGCA
* * *
28590298 ATTTTTAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAA
1 ATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** *
28590363 ACAGCATTTGCTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGA
66 ACAATATTTGCTCTTTGAATTAAAATCTTATTTACGTGAGAATTAGTTCTCTCTTGGTTCTTGGA
* * * ** * *
28590428 TGAACTTTCGATCTTATCAAACTTTTACGAGTTCTTTTATAACTTTGGA-TCCTTAAAGTATTCA
131 CGAACTTTCAATCTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCAATTCCTTAAAGTAATAA
* * *
28590492 AGACGAGACTTTCCCTCGAGCTATTTT
195 AGACGATACATTCCCTCGAGCAATTTT
28590519 TTGAACAATA
Statistics
Matches: 567, Mismatches: 79, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
431 4 0.01
432 252 0.44
433 305 0.54
434 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (432 bp):
ATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAATATTTGCTCTTTGAATTAAAATCTTATTTACGTGAGAATTAGTTCTCTCTTGGTTCTTGGA
CGAACTTTCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAGTAATAAA
GACGATACATTCCCTCGAGCAATTTTCAAAACATTCCATGCTTCAAAAATCACATCATTTGATCT
AAATAGTTTTCATTTTGTAAAAAACTTTTGGTCTTTAACTTAAAAACCTATTTACGTGAGAATTG
TTTCTCTCTTGGTACATGGACGAACTTTCGAACTTGTCAAACCTTTTACGAGTTCTTTTATAACT
TTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCA
Found at i:28590386 original size:217 final size:215
Alignment explanation
Indices: 28589433--28590559 Score: 1345
Period size: 216 Copynumber: 5.2 Consensus size: 215
28589423 AAGGCGATCC
* * *
28589433 ATTTTTCGAACATTCCATGCTTAGGAAATCACATCATTTGGTCTAAATAATTTGTCATTTTGTAA
1 ATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-A
* * * * *
28589498 AAAAGTTTTGCTGTTTTAATTAAAATCTTATTTATGTGAGTATTGTTTCTCTCTTGGTTCTTGGA
65 AAAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
28589563 CGAAC-TTCTGAACTTGTCAAACTTTTACGAGTTCATTTATAACTTTGGTTCCTTAAATTATTCA
130 CGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * *
28589627 AGACGATACTTTCCCTCGATCA
194 AGACGATCCATTCCTTCGAGCA
** * * *
28589649 ATTTTCAAAACATTCCTTGCTTCA-AAAATCACATCATTTGATCTAAATAGTTT-TCATTTTGTA
1 ATTTTCCGAACATTCCATGC-TCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
28589712 AAGAAGTTTTGGTCTTT-AACTTAAAAACCTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTG
65 AA-AAGTTTTGGTCTTTGAA-TTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
*
28589776 GATGAACTTTCGAACTTGTCAAACCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
128 GACGAACTTTCGAACTTGTCAAA-CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * *
28589841 CAAGGCGATCCATTCCTTCCAGTA
192 CAAGACGATCCATTCCTTCGAGCA
* * **
28589865 ATTTTCCGAGCATTCCATGCTCAGGAAATCGCATCATTTGGGATAAATAGTTTGTCATTTTGTAA
1 ATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
28589930 ACAA-TATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTAG-TTCTCTCTTGGTTCTTG
66 A-AAGT-TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTG
* *** *
28589993 GACGAACTTTC-AATCTTGTCAAACTTTTACTAGTTCTTTTATAACTTCAATTCCTTAAAGTAAT
128 GACGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * *
28590057 AAAGATGATCCATTCCTTTGAGCT
192 CAAGACGATCCATTCCTTCGAGCA
** * *
28590081 ATTTTCCGAACATTCCATGCTTGGGAAATCACATTATTTGGTTTAAATAGTTTGTCATTTTGTAA
1 ATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-A
* * * *
28590146 AAAACTTTTGGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCATGGA
65 AAAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * **
28590211 CGAACTTTCGTACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTTGTTTGTTAAAAGTATAT-
130 CGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTT-AAAGTAT-TC
* *
28590275 AAGATGATCCATTCCTTCAAGCA
193 AAGACGATCCATTCCTTCGAGCA
** * * *
28590298 ATTTTTAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATCGTTTGTCATTTTGTAA
1 ATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
28590363 ACAGCATTTGCTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGA
66 AAAG-TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * *
28590428 TGAACTTTCGATCTTATCAAACTTTTACGAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAA
130 CGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
** * * *
28590493 GACGAGACTTTCCCTCGAGCT
195 GACGATCCATTCCTTCGAGCA
** * * * ** *
28590514 ATTTTTTGAACAATACTTGCTC-GGAAATTGCATCATTTGATCTAAA
1 ATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAA
28590560 AGCTTGCAAC
Statistics
Matches: 782, Mismatches: 110, Indels: 39
0.84 0.12 0.04
Matches are distributed among these distances:
214 5 0.01
215 105 0.13
216 398 0.51
217 270 0.35
218 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (215 bp):
ATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
AAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
ACGATCCATTCCTTCGAGCA
Found at i:28593163 original size:215 final size:216
Alignment explanation
Indices: 28592657--28597633 Score: 5563
Period size: 216 Copynumber: 23.1 Consensus size: 216
28592647 AGATCGTATC
* * *
28592657 AAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGATCTTGTCAA
1 AAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * *
28592722 ACTTTTACAAGTTCTTTCATAATTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGC
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
28592787 AATTTTTTGAACATTGCATGCTCGGGAAATCACATCATTTGGT-TAAAATAG--T-TCAATTTGT
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGT
* * * **
28592848 AAAAAAGTTTTTGTGTAAGAATT
194 AAACAAGTTTTGGTCTTTGAATT
* * ** *
28592871 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTTTGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *** *
28592936 CTTTTACGAGTTCTTTTATAACTACAGTTCCATAAAGTATTCAAGACGATAGTTTCCCTCGAGCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * *
28593001 ATTTTTTGAACATTCCTTGCTTGGGAAATCGTATCATTTGATCTAAATAG-TTGTCATTTTGCAA
131 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
28593065 ACAAGTTTTGGTTTTTAAATT
196 ACAAGTTTTGGTCTTTGAATT
* *
28593086 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
28593151 CTTTTGCGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAAATGATCCATTCCTTCGATCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * *
28593216 A-TTTTCGAAATATTCCATGCTAGTGAAATCGCATCATTTGTTCTAAATAGTTTATCATTTTTTA
131 ATTTTTCG-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
** *
28593280 ATTAAGTTTTGGTCTTTGGATT
195 AACAAGTTTTGGTCTTTGAATT
* * * *
28593302 AAAAACTTATTTACATGACAATTGTTTCT-TACTTGGTTCTTGGATGAACTTCTTCTGATCTTTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTC--C-GAAC-TTG
* * *
28593366 TCCAGCTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTC
61 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * *
28593431 CACCAATTTTTCGAACATTCCATGTTTGGGAAATCACATCAGTTGGTTTAAATAGTTTGTCATTT
126 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
28593496 TGTGAACAAGTTTTGGTGTTTGAATT
191 TGTAAACAAGTTTTGGTCTTTGAATT
* * * ** * *
28593522 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTAGGTTGTTGGACGAACTTCAAAATTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
28593587 CTTTTATGAGTTCTTTTATAACTTTGCTTCCTTAAGGTATT-AGAGACAATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGC
* * * * *
28593651 AATTTTCCAAATATTCCAATGCTTGTGAAATCGCATCATTTGGTCTAAATAGTTTCG-CATTATT
130 AATTTTTCGAACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-TT
28593715 -TAAACAAGTTTTGGTCTTTGAATT
192 GTAAACAAGTTTTGGTCTTTGAATT
* * *
28593739 AAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28593804 CTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGC
* * * * *
28593868 AATTTTTCGAATATTCCATGCTCGTGAAATCGTATCA-TTGGTGTAAATAGATTGTCATATTT-T
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTGT
* *
28593931 AAAAAAGTTTTGGTCTTTGGATT
194 AAACAAGTTTTGGTCTTTGAATT
* **** *
28593954 AAAAACTTATTTACGTGACAATTGTTTCT-TAC--CCAACTTGGACGAACTTCTTCTGATCTTGT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTC--C-GAACTTG-
* * *
28594016 TC-AACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGATGATCCATTCCTTC
61 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * *
28594080 CAGCAATTTTTTGAACATTCAATGCTCGGGAAATCACATCAGTTGGTTTAAATAGTTTGTCATTT
126 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
28594145 TGTGAACAAGTTTTGGTGTTTGAATT
191 TGTAAACAAGTTTTGGTCTTTGAATT
* * * * * *
28594171 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTAGGTTGTTGGACGAACTTTCAAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
28594236 CTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGC
* * * * **
28594300 AA-TTTTCTGAATATTCCATGCTTGTGAAATTGCATCATTTGGTCTAAATAGTTTCACATTATT-
130 AATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT-TTG
* *
28594363 TAAAAAAGTTTTGGTCTTTGGATT
193 TAAACAAGTTTTGGTCTTTGAATT
** * *
28594387 AAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28594452 CTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGC
* * * *
28594516 AATTTTTCGAACATTCCATGCTCGTGAACTCGCATCATTTGGTCTAAATAGATTGTCATACTT-T
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTGT
* *
28594580 AAAAAAGTTTTGGTCTTTGGATT
194 AAACAAGTTTTGGTCTTTGAATT
* * **
28594603 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGATTCTAAGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
28594668 CTTTTACAAGTTCTTTTATCACTT-TGTTCCTTAAAGTATTCAACACAATCCATTCCTTTGAG-A
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * *
28594731 AATTTTCTGAACATTCCATGGCT-GGGAAATCACATCATTTAGTCTAAATAGTTTGTCAATTTGT
131 ATTTTTC-GAACATTCCAT-GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
28594795 AAACAACTTTTGGTCTTTGAATT
194 AAACAAGTTTTGGTCTTTGAATT
* * * * * * * *
28594818 AAAATCTTATTTACGTCAAAATTATCTCTCTCTTGGTTCTTGGATGAACTTCCGATCTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * ** *
28594883 CTTTTACAAGTCCTTTCAGAACTTTGGTTCCTTAAAGTATTCAAGACGATAGATTCCTTCCAGCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * ** * * *
28594948 ATTTTCCGAACATTGCATGCTCGGGAAATCATATCATTTGTTTTAAATAGTTTGTCAATTTGTAA
131 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
*
28595013 ACAAGTTAT--TCTGTGTGAATT
196 ACAAGTTTTGGTCT-T-TGAATT
* * * * **
28595034 AAAATCTAATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTTGACGAACTTCCGAACTAATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *** *
28595099 CTTTTACGAGTTCTTTTATAACTACGGTTCCATAAAGTATTCAAGACGATAGTTTCCCTCGAGCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * *
28595164 A-TTTTCTGAACATTCCTTGCTTGGGAAATCGCATTATTTGATATAAATAG-TTGTCATTTTGCA
131 ATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
28595227 AACAAGTTTTAGTCTTTAAATT
195 AACAAGTTTTGGTCTTTGAATT
* * * *
28595249 GAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
28595314 CTTTTGCGAGTTCTTTTA-ATACTTCGGTTCATTAAAGTATTCAAAACGATCCTATTCCTTCGAT
66 CTTTTACGAGTTCTTTTATA-ACTTCGGTTCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAG
** * * * *
28595378 CAATTTTTAAAATATTCCATGCTCGTGAAATCGCATCATTTGGTATAAATAG-TTGTCATTTTTT
129 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
** *** *
28595442 AAGTAAG-TAAAGTCTTTGCATT
194 AAACAAGTTTTGGTCTTTGAATT
* * * * *
28595464 AAAAACTTAATTACGTGACAATTGTTTCT-TACTTGGTTCTTGGACGAACTTCAGATCTTGTCCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* ** * *
28595528 ACTTTTATGAGTTCTTTTATAACTTTAGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGC
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * *
28595593 AATTTTTTGAACATTCCATGCTCCGGAAATCACAACAGTTGGTTTAAATAGTTTGTCATTTTGTG
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
28595658 AACAAGTTTTGGTGTTTGAATT
195 AACAAGTTTTGGTCTTTGAATT
* * * * *
28595680 AAAATCTTATTTACGAGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
28595745 CTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT-AGAGACCATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGC
* * * *
28595809 AA-TTTTCTGAATATTCCTTGCTCGTGAAATCGCATCCTTTGGTCTAAATAGTTTCG-CATTATT
130 AATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-TT
*
28595872 -TAAACAAGTTTTGGTCTTTGGATT
192 GTAAACAAGTTTTGGTCTTTGAATT
* * *
28595896 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAA-TTGCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCGAACTTGTCAA
* *
28595960 ACATTTT-CAAGTTCTTTTATAACTTCGGTTCCTTAAAGT-TT-AGAGACAATCCATTCCTTCGA
65 AC-TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGA
* * * *
28596022 TCAATTTTTCGAATATTCCATGCTCGTGAAATCGCATCATTTGATCTAAATAGTTTCGT-ATTAT
128 GCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-T
*
28596086 T-TAAACAAGTTTTGGTCTTTGGATT
191 TGTAAACAAGTTTTGGTCTTTGAATT
* * * **
28596111 AAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATGAA-TTGATGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCGAACTTGTCAA
* * * * *
28596175 ACATTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCAAT
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAG
* * * *
28596239 CAATTTTTCGAATATTCCATGCTCGTGAAATCGTATCATTCGGTCTAAATAGTTTCGT-ATTATT
129 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-TT
* *
28596303 -TAAATAAGTTTTGGTCTTTGGATT
192 GTAAACAAGTTTTGGTCTTTGAATT
* * * *
28596327 AAAAACTTATTTACATGAGAATTCTTTCTCTCTTTGTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
28596392 CTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT-ACAGACAATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGC
* * * * **
28596456 AATTTTTCAAATATTCCATTCTCGTGAAATCGCATCATTTGGTCTAAATAGAGTGTCATATTT-T
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTGT
* *
28596520 AAAAAAGTTTTGGTCTTTGGATT
194 AAACAAGTTTTGGTCTTTGAATT
* * * * *
28596543 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGATTCTAT-GATGAACTTCCGAACTTGTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTTCCGAACTTGTCAA
* * *
28596607 ACTTTTACAAGTTTTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAG-
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * *
28596670 AACTTTTTCGAACATTCCATGGTCGAGAAATCACATCATTTGGTCTAAGTAGTTTGTCAATTTGT
130 AA-TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
28596735 AAA-TAGCTTTTGGTCTTTGAATT
194 AAACAAG-TTTTGGTCTTTGAATT
* * *
28596758 AAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCC-AATCTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAA
* * * *
28596822 ACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGT
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** *
28596887 AATTTTTCGAACATTCCATGCTCGGGAAATCATATCATTTGGTTTAAATAGTTTGTCA-TTTGTA
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
28596951 AACAAGTTTTTGTGTGTGAATT
195 AACAAGTTTTGGTCTTTGAATT
* * * *
28596973 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCATT-GACGAACATCCGAACTAGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGTCAA
* * * * * *
28597037 ACTTTTATGAGTTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGACGATACTTTCCCTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * *
28597102 AATTTTCCGAACATTCCTTGCTCAGTAAATCACATCATTTGATCTAAATAG-TTGCCATTTTGTA
130 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
28597166 AACAAGTTTTGGTCTTTAAATT
195 AACAAGTTTTGGTCTTTGAATT
* * *
28597188 AAAAACTTATTTGCGCGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * * *
28597253 CTTTTGCGAGTTCTTTTATAACTTCAGTTCATTAAAGTCTTCAAGACGATCCATTTCTTCCATCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * ** * *
28597318 A-TTCTCAAAATATTCCATGCTCATGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTT
131 ATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*** *
28597382 AATTTGTTTTGGTCTTTGGATT
195 AACAAGTTTTGGTCTTTGAATT
* * * * *
28597404 AAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTGATCTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
28597469 CTTTTATGAGTTCTTTTATAACTTCGGTTCGTTAAAGTATTCAAGACAATCCATTCCTTCCAGCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * * * *
28597534 ATTTCTCGAGCATTCCCTGCTCGAGAAATCACATCAGTTT-CTTTAAATAGTTTATCATTTTGTA
131 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTA
* *
28597598 AACTAGTTTTGGTGTTTGAATT
195 AACAAGTTTTGGTCTTTGAATT
*
28597620 AAAATCTTATTTAC
1 AAAAACTTATTTAC
28597634 ATTGAGTCCT
Statistics
Matches: 4078, Mismatches: 599, Indels: 170
0.84 0.12 0.04
Matches are distributed among these distances:
213 161 0.04
214 102 0.03
215 1393 0.34
216 1922 0.47
217 301 0.07
218 5 0.00
219 14 0.00
220 173 0.04
221 7 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCTTTGAATT
Found at i:28594074 original size:216 final size:214
Alignment explanation
Indices: 28592657--28600501 Score: 5491
Period size: 216 Copynumber: 36.1 Consensus size: 214
28592647 AGATCGTATC
* * *
28592657 AAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGATCTTGTCAA
1 AAAAA-CTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * *
28592722 ACTTTTACAAGTTCTTTCATAATTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGC
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATC
* * * * *
28592787 AATTTTTTGAACATTGCATGCTCGGGAAATCACATCATTTGGT-TAAAATAG--T-TCAATTTGT
129 AATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCT-AAATAGTTTGTC-ATTTTT
* * * **
28592848 AAAAAAGTTTTTGTGTAAGAATT
192 AAACAAGTTTTGGTCTTTGAATT
* * ** *
28592871 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTTTGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *** * *
28592936 CTTTTACGAGTTCTTTTATAACTACAGTTCCATAAAGTATTCAAGACGATAGTTTCCCTCGAGCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * * * *
28593001 ATTTTTTGAACATTCCTTGCTTGGGAAATCGTATCATTTGATCTAAATAG-TTGTCATTTTGCAA
130 ATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-TAA
* *
28593065 ACAAGTTTTGGTTTTTAAATT
194 ACAAGTTTTGGTCTTTGAATT
* *
28593086 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
28593151 CTTTTGCGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAAATGATCCATTCCTTCGATCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * *
28593216 A-TTTTCGAAATATTCCATGCTAGTGAAATCGCATCATTTGTTCTAAATAGTTTATCATTTTTTA
130 ATTTTTCG-AACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTTA
** *
28593280 ATTAAGTTTTGGTCTTTGGATT
193 AACAAGTTTTGGTCTTTGAATT
* * * *
28593302 AAAAACTTATTTACATGACAATTGTTTCT-TACTTGGTTCTTGGATGAACTTCTTCTGATCTTTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-C-TGGTTCTTGGACGAACTTC--C-GAAC-TTG
* * *
28593366 TCCAGCTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTC
60 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * * *
28593431 CACCAATTTTTCGAACATTCCATGTTTGGGAAATCACATCAGTTGGTTTAAATAGTTTGTCATTT
125 GATCAATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
28593496 TGTGAACAAGTTTTGGTGTTTGAATT
190 T-TAAACAAGTTTTGGTCTTTGAATT
* * ** * *
28593522 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTAGGTTGTTGGACGAACTTCAAAATTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCT-GGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
28593587 CTTTTATGAGTTCTTTTATAACTTTGCTTCCTTAAGGTATT-AGAGACAATCCATTCCTTCGATC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * * *
28593651 AATTTTCCAAATATTCCAATGCTTGTGAAATCGCATCATTTGGTCTAAATAGTTTCG-CATTATT
129 AATTTTTCGAACATTCC-ATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-TT
28593715 TAAACAAGTTTTGGTCTTTGAATT
191 TAAACAAGTTTTGGTCTTTGAATT
* * *
28593739 AAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
28593804 CTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGATC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * * *
28593868 AATTTTTCGAATATTCCATGCTCGTGAAATCGTATCA-TTGGTGTAAATAGATTGTCATATTTTA
129 AATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTTA
* *
28593932 AAAAAGTTTTGGTCTTTGGATT
193 AACAAGTTTTGGTCTTTGAATT
* **** *
28593954 AAAAACTTATTTACGTGACAATTGTTTCT-TAC-CCAACTTGGACGAACTTCTTCTGATCTTGTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-CTGGTTCTTGGACGAACTTC--C-GAACTTG-T
* * * *
28594017 C-AACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGATGATCCATTCCTTCC
61 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * * * * * *
28594081 AGCAATTTTTTGAACATTCAATGCTCGGGAAATCACATCAGTTGGTTTAAATAGTTTGTCATTTT
126 ATCAATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
28594146 GTGAACAAGTTTTGGTGTTTGAATT
191 -TAAACAAGTTTTGGTCTTTGAATT
* * * * *
28594171 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTAGGTTGTTGGACGAACTTTCAAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCT-GGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28594236 CTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGATC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * * **
28594300 AA-TTTTCTGAATATTCCATGCTTGTGAAATTGCATCATTTGGTCTAAATAGTTTCACATTATTT
129 AATTTTTC-GAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT-TTT
* *
28594364 AAAAAAGTTTTGGTCTTTGGATT
192 AAACAAGTTTTGGTCTTTGAATT
** * *
28594387 AAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
28594452 CTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGATC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * *
28594516 AATTTTTCGAACATTCCATGCTCGTGAACTCGCATCATTTGGTCTAAATAGATTGTCATACTTTA
129 AATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTTA
* *
28594581 AAAAAGTTTTGGTCTTTGGATT
193 AACAAGTTTTGGTCTTTGAATT
* * **
28594603 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGATTCTAAGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * * *
28594668 CTTTTACAAGTTCTTTTATCACTT-TGTTCCTTAAAGTATTCAACACAATCCATTCCTTTGA-GA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * *
28594731 AATTTTCTGAACATTCCATGGCT-GGGAAATCACATCATTTAGTCTAAATAGTTTGTCAATTTGT
130 ATTTTTC-GAACATTCCAT-GCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTT
*
28594795 AAACAACTTTTGGTCTTTGAATT
192 AAACAAGTTTTGGTCTTTGAATT
* * * * * * * *
28594818 AAAATCTTATTTACGTCAAAATTATCTCTCTCTTGGTTCTTGGATGAACTTCCGATCTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * ** * *
28594883 CTTTTACAAGTCCTTTCAGAACTTTGGTTCCTTAAAGTATTCAAGACGATAGATTCCTTCCAGCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * ** * * *
28594948 ATTTTCCGAACATTGCATGCTCGGGAAATCATATCATTTGTTTTAAATAGTTTGTCAATTTGTAA
130 ATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTTAA
*
28595013 ACAAGTTAT--TCTGTGTGAATT
194 ACAAGTTTTGGTCT-T-TGAATT
* * * * **
28595034 AAAATCTAATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTTGACGAACTTCCGAACTAATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *** * *
28595099 CTTTTACGAGTTCTTTTATAACTACGGTTCCATAAAGTATTCAAGACGATAGTTTCCCTCGAGCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * * * *
28595164 A-TTTTCTGAACATTCCTTGCTTGGGAAATCGCATTATTTGATATAAATAG-TTGTCATTTTGCA
130 ATTTTTC-GAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-TA
* *
28595227 AACAAGTTTTAGTCTTTAAATT
193 AACAAGTTTTGGTCTTTGAATT
* * * *
28595249 GAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28595314 CTTTTGCGAGTTCTTTTA-ATACTTCGGTTCATTAAAGTATTCAAAACGATCCTATTCCTTCGAT
65 CTTTTACGAGTTCTTTTATA-ACTTCGGTTCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAT
** * *
28595378 CAATTTTTAAAATATTCCATGCTCGTGAAATCGCATCATTTGGTATAAATAG-TTGTCATTTTTT
128 CAATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTT
** *** *
28595442 AAGTAAG-TAAAGTCTTTGCATT
192 AAACAAGTTTTGGTCTTTGAATT
* * * * *
28595464 AAAAACTTAATTACGTGACAATTGTTTCT-TACTTGGTTCTTGGACGAACTTCAGATCTTGTCCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-C-TGGTTCTTGGACGAACTTCCGAACTTGTCAA
* ** * * *
28595528 ACTTTTATGAGTTCTTTTATAACTTTAGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGC
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATC
* * * * *
28595593 AATTTTTTGAACATTCCATGCTCCG-GAAATCACAACAGTTGGTTTAAATAGTTTGTCATTTTGT
129 AATTTTTCGAACATTCCATGCT-CGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-T
* *
28595657 GAACAAGTTTTGGTGTTTGAATT
192 AAACAAGTTTTGGTCTTTGAATT
* * * * *
28595680 AAAATCTTATTTACGAGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28595745 CTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT-AGAGACCATCCATTCCTTCGATC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * *
28595809 AA-TTTTCTGAATATTCCTTGCTCGTGAAATCGCATCCTTTGGTCTAAATAGTTTCG-CATTATT
129 AATTTTTC-GAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-TT
*
28595872 TAAACAAGTTTTGGTCTTTGGATT
191 TAAACAAGTTTTGGTCTTTGAATT
* * *
28595896 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAA-TTGCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTT-CCGAACTTGTCAA
* *
28595960 ACATTTT-CAAGTTCTTTTATAACTTCGGTTCCTTAAAGT-TT-AGAGACAATCCATTCCTTCGA
64 AC-TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGA
* *
28596022 TCAATTTTTCGAATATTCCATGCTCGTGAAATCGCATCATTTGATCTAAATAGTTTCGT-ATTAT
127 TCAATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-T
*
28596086 TTAAACAAGTTTTGGTCTTTGGATT
190 TTAAACAAGTTTTGGTCTTTGAATT
* * * **
28596111 AAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATGAA-TTGATGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTT-CCGAACTTGTCAA
* * * *
28596175 ACATTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCAAT
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAT
* * *
28596239 CAATTTTTCGAATATTCCATGCTCGTGAAATCGTATCATTCGGTCTAAATAGTTTCGT-ATTATT
128 CAATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-TT
* *
28596303 TAAATAAGTTTTGGTCTTTGGATT
191 TAAACAAGTTTTGGTCTTTGAATT
* * * *
28596327 AAAAACTTATTTACATGAGAATTCTTTCTCTCTTTGTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28596392 CTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT-ACAGACAATCCATTCCTTCGATC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * * **
28596456 AATTTTTCAAATATTCCATTCTCGTGAAATCGCATCATTTGGTCTAAATAGAGTGTCATATTTTA
129 AATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTTA
* *
28596521 AAAAAGTTTTGGTCTTTGGATT
193 AACAAGTTTTGGTCTTTGAATT
* * * * *
28596543 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGATTCTAT-GATGAACTTCCGAACTTGTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCT-TGGACGAACTTCCGAACTTGTCAA
* * * *
28596607 ACTTTTACAAGTTTTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGA-G
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATC
* * * * *
28596670 AACTTTTTCGAACATTCCATGGTCGAGAAATCACATCATTTGGTCTAAGTAGTTTGTCAATTTGT
129 AA-TTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTT
*
28596735 AAA-TAGCTTTTGGTCTTTGAATT
192 AAACAAG-TTTTGGTCTTTGAATT
* * *
28596758 AAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCC-AATCTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAA-CTTGTCAA
* * *
28596822 ACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGT
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-T
* ** * *
28596887 -AATTTTTCGAACATTCCATGCTCGGGAAATCATATCATTTGGTTTAAATAGTTTGTCATTTGTA
128 CAATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTA
* * *
28596951 AACAAGTTTTTGTGTGTGAATT
193 AACAAGTTTTGGTCTTTGAATT
* * * *
28596973 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCATT-GACGAACATCCGAACTAGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTC-TTGGACGAACTTCCGAACTTGTCAA
* * * * * * *
28597037 ACTTTTATGAGTTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGACGATACTTTCCCTCGAGC
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATC
* * * * *
28597102 AATTTTCCGAACATTCCTTGCTCAGT-AAATCACATCATTTGATCTAAATAG-TTGCCATTTTGT
129 AATTTTTCGAACATTCCATGCTC-GTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-T
*
28597165 AAACAAGTTTTGGTCTTTAAATT
192 AAACAAGTTTTGGTCTTTGAATT
* *
28597188 AAAAACTTATTTGCGCGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-CTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
28597253 CTTTTGCGAGTTCTTTTATAACTTCAGTTCATTAAAGTCTTCAAGACGATCCATTTCTTCCATCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * *
28597318 A-TTCTCAAAATATTCCATGCTCATGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTT
130 ATTTTTC-GAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTTA
*** *
28597382 AATTTGTTTTGGTCTTTGGATT
193 AACAAGTTTTGGTCTTTGAATT
* * * * *
28597404 AAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTGATCTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
28597469 CTTTTATGAGTTCTTTTATAACTTCGGTTCGTTAAAGTATTCAAGACAATCCATTCCTTCCAGCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * * * * *
28597534 ATTTCTCGAGCATTCCCTGCTCGAGAAATCACATCAGTTT-CTTTAAATAGTTTATCATTTTGTA
130 ATTTTTCGAACATTCCATGCTCGTGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTT-TA
* *
28597598 AACTAGTTTTGGTGTTTGAATT
193 AACAAGTTTTGGTCTTTGAATT
* * ** *** * * * *
28597620 AAAATCTTATTTACATTGAG--TCCTTAAAAC-C-GAATTC----AAG-TCTATCC-AACTATAT
1 AAAAACTTATTTAC-GTGAGAATTGTT-TCTCTCTG-GTTCTTGGACGAACT-TCCGAACT-TGT
* * * * *** * * * *
28597675 C--CCTTTCATCCA--CCATCCCA-AAGCCTATC-ATT--TT-CA-T-TTCCA-ACCATCACAAA
61 CAAACTTTTA-CGAGTTC-TTTTATAA--CT-TCGGTTCCTTAAAGTATTCAAGACGATC-C--A
* * ** ** * * * * **
28597728 ATCTCTTACGAAT-GATACTTCTTA-ATTTC--GATCGGGAACTCACGCGACTCATAATCATCCT
118 TTC-CTT-CG-ATCAATTTTTCGAACATTCCATGCTCGTGAAAT--CGC-A-TCAT--T--T-GG
* * * * * * * * *
28597789 TCGAGGATGAGCTCATATCA-TTTGATATCAGAG--CTAG-C--TAAATT
171 TCTA-AAT-AG-T-TTGTCATTTTTA-AACA-AGTTTTGGTCTTTGAATT
* * * * ** ** *****
28597833 AAGTAA-GTA-TT-C--GACG--TTCTTATCTCTTCCGGGATTAGCATTAAAAAAAAGAGAGAA-
1 AA-AAACTTATTTACGTGA-GAATTGTT-TCTC-T-CTGG-TT--C-TTGGACGAACTTCCGAAC
* * ** ** ******* * ** * * *
28597890 -AG--AAAATTAAAAAAAGAAAAAAAATACAGCAGATTTGAATCC--CAAG--TTCAAAATACAA
57 TTGTCAAACTT-TTACGAGTTCTTTTATA-A-C---TTCGGTTCCTTAAAGTATTC--AAGAC-G
*** * ** * * **** * * * * * *
28597948 AGGGAGT--TTCGA--AATTCAAT-AAAAAAAAGA-GCTAGTTAAAAGT-GTA-CAATT--CCCA
113 ATCCATTCCTTCGATCAATT-TTTCGAACATTCCATGCTCG-TGAAA-TCGCATCATTTGGTCTA
* ** ** *** *
28598003 AGTACCAGTTT-TCATTTCCATAACAA-TTTCAG-C-CACACTT
175 A--A-TAGTTTGTCATTTTTA-AACAAGTTTTGGTCTTTGAATT
** * * ** * * * ** * * * *
28598043 -CTATCTTCA-TT--G-AAGCCTTCCCTATCAC-CTAATTATCATT--CCTACCTTACCTCATA-
1 AAAAACTT-ATTTACGTGAGAATT--GTTTCTCTCT-GGT-TC-TTGGACGAACTT-CC-GA-AC
* * * ** ****
28598099 TT-TGAAACTGATACTACGAGGTT-TGTTGTTTAAGTCTAAGGAAGAATGTGAAAGATTAGTTCT
57 TTGTCAAACT--T-TTACGA-GTTCT-TT-TATAA--CTTCGG-TTCCT-T-AAAG--TA-TTC-
** * * * * ** *
28598162 TGGACGAACTTC-TGATCTTGTCCAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAG-T
107 AAGACG-A-TCCAT--TCCT-T-CGA----T-C-A-AT-TTTTCGAA---CA-TTCC---ATGCT
** * * *** * * * * * *
28598225 ATTCAAAACG-ATCCATTCCTTC-CAGTA--TT-T--TTTTGAACATTCCATGCTTGGGAAATCA
151 CGTGAAATCGCAT-CATTTGGTCTAAATAGTTTGTCATTTTTAA-A---CAAGTTTTGG---T--
**
28598283 CATCAGTTGGTTT
206 C-T---TTGAATT
** * * * ** ** * ** **
28598296 AAATAGTTTGTCTTTC-TGTAAAAAAGTTT-T-GGTGTTTCAATT--A--AA-TTCTTATTTATG
1 AAA-AACTTAT-TTACGTG-AGAATTGTTTCTCTCTGGTTC--TTGGACGAACTTCCGAACT-TG
* * * * ** * * * * * * *
28598353 TGAGAATTGTTTCTCTCTTG-GTTGTTGGACGAACTTCCGAACTT-TTTAAACTTTTACGAGTTC
60 TCA-AA--CTTT-T-AC--GAGTTCTTTTA-TAACTT-CG--GTTCCTTAAAGTATT-CAAG-AC
** ** * * * * ** *
28598416 -ATTTATTACTTCGGTTCCTTCAAGTATTCAAGAAGA-TCCATTCGTACCAGCAATTTTCCGAGC
112 GATCCATT-C--C--TTCGATCAATTTTTC--GAACATTCCATGC-T-CGTG-AA--AT-C--GC
* * * **
28598479 ATTCCATGCACGAGAAATTGCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAACATTTGG
162 A-T-CAT----------TTG-GTC-------TAAAT-AGTTTGTCATTTT-TAAACAAGTTTTGG
28598544 TCTTTGAATT
205 TCTTTGAATT
* * * * * * *
28598554 AAAATCTTTTTTACGTGTGAATTATTTCTCTTTTGGTTCTTGGACGAACATCCGATCTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTC-TCTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28598619 CTTTTACGAGTTTTTTTATAACTTCGGTACCTTAAAGTATTCAAGACGATCCATTCCCTT-GAGC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT-CCTTCGATC
* * ** **
28598683 AATTTTTCGAACATTCCATGCTCGGGAAATCACATCATCCGGTCTAAATAG-TTGTCACTTTGCA
129 AATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTTA
*
28598747 AACAAGTTTTGGTCTTTAAATT
193 AACAAGTTTTGGTCTTTGAATT
*
28598769 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** * * * * *
28598834 CTTTTTTGAGTTCTTTTTTAACTTCAGTTCATTAAAGTATTCAAAACAATCCATTCCTTCGATCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
*
28598899 A--TTT------TTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTTTAA
130 ATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTTAA
*
28598956 ATAAGTTTTGGTCTTTGGAA-T
194 ACAAGTTTTGGTCTTT-GAATT
* * * * * * *
28598977 AAAAATTTATTTACGTGACAATTTTTTCT-TACTTGGTTCTTGGATGAACTTCTGATCTTGTCCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-C-TGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
28599041 ACTTTTACGAGTTCTTTTATAACTTCTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAGT
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-T
* * * * * *
28599106 -AATTTTTCGAACATTCCATGCTCGGGAAATCACATCAGTTAGTTTCAATAGTTTGTCATTTTGT
128 CAATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-T
* *
28599170 AAACAAGTTTTGATGTTTGAATT
192 AAACAAGTTTTGGTCTTTGAATT
* * * *
28599193 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * * * * *
28599258 CTTTTACCAGTTCTTTTATAACTTTGGTTCTTTATAGTATTCAAGATGATACTTTCCCTCGAGCA
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * *
28599323 ATTTTCCGAACATTCCTTGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCAGTTTTTAT
130 ATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTTA-
**
28599388 AA-AACATTTGGTCTTTGAATT
193 AACAAGTTTTGGTCTTTGAATT
* * *
28599409 AAAAACTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCC-AATCTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAA-CTTGTCAA
* * * *
28599473 ACTTTTATGAGTTCTTTTATAAGTTCGTTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATC
* * * * * * * * * *
28599538 ACTTTTCCGAACAATACTTGCTTGGGAAATCGCATCATTTTGTCGAAATAGATTGTCATTTTGTA
129 AATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-TA
**
28599603 AACAAGTTTTGGTCTTAAAATT
193 AACAAGTTTTGGTCTTTGAATT
* * *
28599625 AAAAACTTATTTATGTGAAAATTGTTTCTCT-TGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* * * * *
28599689 TTTTGCGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAAACGATCCGTTCCTTCGATCAA
66 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA
*
28599754 TTTTT-GAAACATTCCATGCTCATGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAA
131 TTTTTCG-AACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TTTTTAA
* *
28599818 ATAAGTTTTGGTCTTTGGATT
194 ACAAGTTTTGGTCTTTGAATT
* * * * * * *
28599839 AAAAGCTTATTTACGTGACAATTGTTTCT-TACTTGGTTCTTGGACAAACTTCTGATCTTATCCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-C-TGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
28599903 ACTTTTACGAGTTCTTTTATAATTTCGGTTCATTAAAGTATTCCAGACGATCCATTCCTTCCAGT
64 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-T
* ** * *
28599968 -AA-TTTTCGAACATTCCATGCTCGGGAAATCAAATCAGTTGGTTTAAATAGTTTGTCATTTTGT
128 CAATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-T
*
28600031 AAACAAGTTTTGGTGTTTGAATT
192 AAACAAGTTTTGGTCTTTGAATT
* * *
28600054 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28600119 CTTTTATGAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATT--AGA-GAATCCATTCCTTCGGTC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTTCGATC
* * * * *
28600181 AATTTTCCTAATATTTCATGCTCGTGAAATTGCATCATTTGGTCTAAATAGTTTCG-CATTATTT
129 AATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATT-TTT
*
28600245 AAACAAGTTTTGGTCTTTGGATT
192 AAACAAGTTTTGGTCTTTGAATT
* * *
28600268 AAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
28600333 CTTTTACGAGTTCTTCTATAACTTTGCTTCATTAAAGTATT-AGAGACAATCCATTCCTTCGATC
65 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * * * * * *
28600397 AATTTTTTGAATATTCCATGCTGGTGAAATCGCATCATTTTGTCGAAATAGATTGTCATATTTCA
129 AATTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT-TTTTA
* *
28600462 AAAAAGTTTTGGTCTTTGGATT
193 AACAAGTTTTGGTCTTTGAATT
*
28600484 AAAAACTTATTTATGTGA
1 AAAAACTTATTTACGTGA
28600502 TGATATGAGC
Statistics
Matches: 6107, Mismatches: 1132, Indels: 782
0.76 0.14 0.10
Matches are distributed among these distances:
203 5 0.00
204 5 0.00
205 9 0.00
206 5 0.00
207 48 0.01
208 166 0.03
209 40 0.01
210 23 0.00
211 10 0.00
212 11 0.00
213 204 0.03
214 464 0.08
215 1709 0.28
216 2538 0.42
217 339 0.06
218 16 0.00
219 25 0.00
220 176 0.03
221 18 0.00
222 8 0.00
223 5 0.00
224 6 0.00
225 4 0.00
226 2 0.00
227 4 0.00
228 1 0.00
234 1 0.00
235 4 0.00
236 4 0.00
237 9 0.00
238 7 0.00
239 2 0.00
240 8 0.00
241 3 0.00
242 10 0.00
243 9 0.00
244 13 0.00
245 14 0.00
246 11 0.00
247 4 0.00
248 5 0.00
249 5 0.00
250 4 0.00
251 15 0.00
252 16 0.00
253 11 0.00
254 15 0.00
255 17 0.00
256 15 0.00
257 12 0.00
258 11 0.00
259 7 0.00
260 2 0.00
261 7 0.00
262 6 0.00
264 2 0.00
265 1 0.00
267 8 0.00
268 1 0.00
270 5 0.00
271 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA
TTTTTCGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTAAAC
AAGTTTTGGTCTTTGAATT
Found at i:28594916 original size:431 final size:430
Alignment explanation
Indices: 28592657--28600501 Score: 6726
Period size: 431 Copynumber: 18.0 Consensus size: 430
28592647 AGATCGTATC
* * *
28592657 AAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGATCTTGTCAA
1 AAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * *
28592722 ACTTTTACAAGTTCTTTCATAATTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCCAGC
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATC
* * *
28592787 AATTTTTTGAACATTGCATGCTCGGGAAATCACATCATTTGGT-TAAAATAG--T-TCA-ATTTG
130 AATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCT-AAATAGTTTGTCATATTT-
* * * ** *
28592847 TAAAAAAGTTTTTGTGTAAGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
193 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* ** * ** *
28592912 TGACGAACTTTTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTACAGTTCCATAAAGTATT
258 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT-TGGTTCCTTAAAGTATT
*** * * * * *
28592977 CAAGACGATAGTTTCCCTCGAGCAATTTTTTGAACATTCCTTGCTTGGGAAATCGTATCATTTGA
322 CAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * * *
28593042 TCTAAATAG-TTGTCATTTTGCAAACAAGTTTTGGTTTTTAAATT
386 TCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* *
28593086 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
28593151 CTTTTGCGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAAATGATCCATTCCTTCGATCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * * *
28593216 A-TTTTCGAAATATTCCATGCTAGTGAAATCGCATCATTTGTTCTAAATAGTTTATCATTTTTTA
131 ATTTTTCG-AACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTTTA
** * * *
28593280 ATTAAGTTTTGGTCTTTGGATTAAAAACTTATTTACATGACAATTGTTTCT-TACTTGGTTCTTG
195 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTG
* * * * *
28593344 GATGAACTTCTTCTGATCTTTGTCCAGCTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAAGT
259 GACGAACTTC--C-GAAC-TTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGT
* * * * * *
28593409 ATTCAAGACGATCCATTCCTTCCACCAATTTTTCGAACATTCCATGTTTGGGAAATCACATCAGT
319 ATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATT
* * * *
28593474 TGGTTTAAATAGTTTGTCATTTTGTGAACAAGTTTTGGTGTTTGAATT
383 TGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * * ** * *
28593522 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTAGGTTGTTGGACGAACTTCAAAATTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
28593587 CTTTTATGAGTTCTTTTATAACTTTGCTTCCTTAAGGTATT-AGAGACAATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * * * *
28593651 AATTTTCCAAATATTCCAATGCTTGTGAAATCGCATCATTTGGTCTAAATAGTTTCG-CAT-TAT
130 AATTTTTCGAACATTCC-ATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTT-GTCATAT-T
* *
28593714 TTAAACAAGTTTTGGTCTTTGAATTAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTCT
192 TTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* *
28593779 TGGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTAAAGTAT
257 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGTAT
* * * * *
28593844 T-AGAGACAATCCATTCCTTCGATCAATTTTTCGAATATTCCATGCTCGTGAAATCGTATCA-TT
321 TCA-AGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTT
* * * *
28593907 GGTGTAAATAGATTGTCATATTT-TAAAAAAGTTTTGGTCTTTGGATT
384 GGTCTAAATAGTTTGTCA-ATTTGTAAACAAGTTTTGGTCTTTGAATT
* **** *
28593954 AAAAACTTATTTACGTGACAATTGTTTCT-TAC--CCAACTTGGACGAACTTCTTCTGATCTTGT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTC--C-GAACTTG-
* * *
28594016 TC-AACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGATGATCCATTCCTTC
61 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * *
28594080 CAGCAATTTTTTGAACATTCAATGCTCGGGAAATCACATCAGTTGGTTTAAATAGTTTGTCAT-T
126 GATCAATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATAT
* * * *
28594144 TTGTGAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTAGGTT
191 TT-TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * * *
28594209 GTTGGACGAACTTTCAAACTTGTTAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGT
255 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTAAAGT
* * * * * *
28594274 ATT-AGAGACAATCCATTCCTTCGATCAATTTTCTGAATATTCCATGCTTGTGAAATTGCATCAT
319 ATTCA-AGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATGCTCGGGAAATCGCATCAT
* * *
28594338 TTGGTCTAAATAG-TT-TCACATTATTTAAAAAAGTTTTGGTCTTTGGATT
382 TTGGTCTAAATAGTTTGTCA-ATT-TGTAAACAAGTTTTGGTCTTTGAATT
** * *
28594387 AAAAACTTATTTACGTGAGAATCATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
28594452 CTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * * *
28594516 AATTTTTCGAACATTCCATGCTCGTGAACTCGCATCATTTGGTCTAAATAGATTGTCATACTTTA
130 AATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTTTA
* * * * **
28594581 AAAAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGATTCTAAG
195 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
28594646 ACGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATCACTTTGTTCCTTAAAGTATTCAA
260 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGTTCCTTAAAGTATTCAA
* * * * * *
28594711 CACAATCCATTCCTTTGAGAAATTTTCTGAACATTCCATGGCT-GGGAAATCACATCATTTAGTC
325 GACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCAT-GCTCGGGAAATCGCATCATTTGGTC
*
28594775 TAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATT
388 TAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * * * * * * *
28594818 AAAATCTTATTTACGTCAAAATTATCTCTCTCTTGGTTCTTGGATGAACTTCCGATCTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * ** * *
28594883 CTTTTACAAGTCCTTTCAGAACTTTGGTTCCTTAAAGTATTCAAGACGATAGATTCCTTCCAGCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * * *
28594948 ATTTTCCGAACATTGCATGCTCGGGAAATCATATCATTTGTTTTAAATAGTTTGTCA-ATTTGTA
131 ATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTT-TA
* * * *
28595012 AACAAGTTAT--TCTGTGTGAATTAAAATCTAATTTACGTGAGAATTGTTTCTCCCTTGGTTCTT
195 AACAAGTTTTGGTCT-T-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* ** * *
28595075 TGACGAACTTCCGAACTAATCAAACTTTTACGAGTTCTTTTATAACTACGGTTCCATAAAGTATT
258 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT-TGGTTCCTTAAAGTATT
*** * * * * *
28595140 CAAGACGATAGTTTCCCTCGAGCAATTTTCTGAACATTCCTTGCTTGGGAAATCGCATTATTTGA
322 CAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * * * *
28595205 TATAAATAG-TTGTCATTTTGCAAACAAGTTTTAGTCTTTAAATT
386 TCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * * *
28595249 GAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28595314 CTTTTGCGAGTTCTTTTA-ATACTTCGGTTCATTAAAGTATTCAAAACGATCCTATTCCTTCGAT
66 CTTTTACGAGTTCTTTTATA-ACTTCGGTTCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAT
** * * * *
28595378 CAATTTTTAAAATATTCCATGCTCGTGAAATCGCATCATTTGGTATAAATAG-TTGTCATTTTTT
129 CAATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTTT
** *** * * *
28595442 AAGTAAG-TAAAGTCTTTGCATTAAAAACTTAATTACGTGACAATTGTTTCT-TACTTGGTTCTT
194 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTT
* * * * * *
28595505 GGACGAACTTCAGATCTTGTCCAACTTTTATGAGTTCTTTTATAACTTTAGTTCATTAAAGTATT
258 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTAAAGTATT
* * * * *
28595570 CAAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCCGGAAATCACAACAGTTGG
322 CAAGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * * *
28595635 TTTAAATAGTTTGTCATTTTGTGAACAAGTTTTGGTGTTTGAATT
386 TCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * * * *
28595680 AAAATCTTATTTACGAGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28595745 CTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT-AGAGACCATCCATTCCTTCGATC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGATC
* * * *
28595809 AA-TTTTCTGAATATTCCTTGCTCGTGAAATCGCATCCTTTGGTCTAAATAGTTTCG-CAT-TAT
130 AATTTTTC-GAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTT-GTCATAT-T
* *
28595871 TTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT
192 TTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * *
28595936 TGGATGAA-TTGCTGAACTTGTCAAACATTTT-CAAGTTCTTTTATAACTTCGGTTCCTTAAAGT
257 TGGACGAACTT-CCGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGT
* * * *
28595999 -TT-AGAGACAATCCATTCCTTCGATCAATTTTTCGAATATTCCATGCTCGTGAAATCGCATCAT
319 ATTCA-AGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCAT
* * *
28596062 TTGATCTAAATAGTTTCGT--ATTATTTAAACAAGTTTTGGTCTTTGGATT
382 TTGGTCTAAATAGTTT-GTCAATT-TGTAAACAAGTTTTGGTCTTTGAATT
* * * **
28596111 AAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATGAA-TTGATGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCGAACTTGTCAA
* * * *
28596175 ACATTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCAAT
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAT
* ** *
28596239 CAATTTTTCGAATATTCCATGCTCGTGAAATCGTATCATTCGGTCTAAATAGTTTCGT-AT-TAT
129 CAATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTT-GTCATAT-T
* * * * *
28596302 TTAAATAAGTTTTGGTCTTTGGATTAAAAACTTATTTACATGAGAATTCTTTCTCTCTTTGTTCT
192 TTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* *
28596367 TGGATGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAT
257 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTAAAGTAT
* * * * * *
28596432 T-ACAGACAATCCATTCCTTCGATCAATTTTTCAAATATTCCATTCTCGTGAAATCGCATCATTT
321 TCA-AGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTT
** * *
28596496 GGTCTAAATAGAGTGTCATATTT-TAAAAAAGTTTTGGTCTTTGGATT
384 GGTCTAAATAGTTTGTCA-ATTTGTAAACAAGTTTTGGTCTTTGAATT
* * * * *
28596543 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGATTCTAT-GATGAACTTCCGAACTTGTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTTCCGAACTTGTCAA
* * * *
28596607 ACTTTTACAAGTTTTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGA-G
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATC
* * *
28596670 AACTTTTTCGAACATTCCATGGTCGAGAAATCACATCATTTGGTCTAAGTAGTTTGTCA-ATTTG
130 AA-TTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTT-
* * *
28596734 TAAA-TAGCTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT
193 TAAACAAG-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * *
28596798 TGGACAAACTTCC-AATCTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTA
257 TGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGTA
* * **
28596862 TTCAAGACGATCCATTCCTTCCAGTAATTTTTCGAACATTCCATGCTCGGGAAATCATATCATTT
320 TTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTT
* * * *
28596927 GGTTTAAATAGTTTGTC-ATTTGTAAACAAGTTTTTGTGTGTGAATT
384 GGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * * *
28596973 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCATT-GACGAACATCCGAACTAGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGTCAA
* * * * * * *
28597037 ACTTTTATGAGTTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGACGATACTTTCCCTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATC
* * * *
28597102 AATTTTCCGAACATTCCTTGCTCAGT-AAATCACATCATTTGATCTAAATAG-TTGCCAT-TTTG
130 AATTTTTCGAACATTCCATGCTC-GTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTT-
* * * *
28597164 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTGCGCGAGAATTGTTTCTCTCCTGGTTCTT
193 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
28597229 GGACGAACTTCCGAACTTGTCAAACTTTTGCGAGTTCTTTTATAACTTCAGTTCATTAAAGTCTT
258 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGTATT
* * * *** * **
28597294 CAAGACGATCCATTTCTTCCATCAATTCTCAAAATATTCCATGCTCATGAAATCGCATCATTTGG
322 CAAGACGATCCATTCCTTCGAGCAATT-TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * * *** *
28597359 TCTAAATAGTTTGTCATTTTTTTAATTTGTTTTGGTCTTTGGATT
386 TCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * * * *
28597404 AAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTGATCTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
28597469 CTTTTATGAGTTCTTTTATAACTTCGGTTCGTTAAAGTATTCAAGACAATCCATTCCTTCCAGCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * * * *
28597534 ATTTCTCGAGCATTCCCTGCTCGAGAAATCACATCAGTTT-CTTTAAATAGTTTATCAT-TTTGT
131 ATTTTTCGAACATTCCATGCTCGTGAAATCACATCA-TTTGGTCTAAATAGTTTGTCATATTT-T
* * * * ** **** ** *
28597597 AAACTAGTTTTGGTGTTTGAATTAAAATCTTATTTACATTGAGTCCTTAAAAC-CGAATTCAAG-
194 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC-GTGAG-AATTGTTTCTC-TCTT--GGT
** * * * * ** * * * * **
28597660 TCTATCCAACTATATCCCTTTCATCCACCATCCCAAAGCCTAT-C-ATTTTCATTTCCAACCATC
254 TCT-T-GGACGA-A---C-TTC--CGAACTTGTCAAA-CTTTTACGA-GTTCTTTTATAA-C-T-
**** ** ***** * * **
28597723 ACAAAATCTCTTACGAATGATACTTCTTAATTTCGATCGGGAAC-TC-ACGCGACTCAT-AATCA
305 --TGGTTC-CTTA--AA-G-TA-TTC--AA-GACGATCCATTCCTTCGA-GCAATTTTTGAA-CA
* ** * * * * * * * *
28597785 -TCC-T--TCGAGGATGAGCTCATATCATTTGATAT-CAGAGCTAGCTAAATTAAGTAAGTATTC
357 TTCCATGCTCG-GGA--A-ATCGCATCATTTGGTCTAAATAGTTTG-TCAATT-TGTAA--A--C
* *
28597845 GACGTTCTT-ATCTCTTCCGGGATTAGCATT
412 -AAGTT-TTGGTCT-TT----G---A--ATT
** *** * * ****** * * * * *
28597875 AAAAA-AAAGAGA-GAAAGAAAATTAAAAAAAGAAAAAAAATAC-AGCAGAT-TTGAATCCCAAG
1 AAAAACTTATTTACG--TGAGAATT-------G--TTTCTCT-CTTG--GTTCTTGGA--CGAAC
** * ** * ** * **** * ** * *
28597936 TT-C-AAAAT-ACAAAGGGAGTTT-CGAAATTC-AATAAAAAAAAGAGCTAGTTAAAAGTGTACA
50 TTCCGAACTTGTCAAA---CTTTTACG-AGTTCTTTTATAACTTCG-GTTCCTT-AAAGTATTCA
** * * * * * *
28597996 ATTCCCAAGTACCAGTTTTCATTTCCATAACAA--TTTCAGCCACACTTCTAT-CTTCATTGAAG
109 A--GACGA-T-CCA---TTC-CTTCGAT--CAATTTTTC-G-AACA-TTCCATGC-TC-GTGAA-
* * * *** * ** * * *** *
28598058 CCTTCCCTATCACCTAATT-ATCATTCCTACCTTACCTCATATTTGAAACTGATACTACGAGGTT
158 --ATCAC-ATCA--T--TTGGTC-TAAATA-GTT-TGTCATATTTTAAAC--A-AGT-TTTGGTC
* ** ****** * *
28598122 TGTTG--TTTAAGTC-TA---A-G-GAAGAA-TG-TGAAAGATTAGTTCTTGGACGAACTTCTGA
209 T-TTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
* * * *
28598177 TCTTGTCCAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAAACGATCCATT
272 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * * * *
28598242 CCTTCCAGTATTTTTTTGAACATTCCATGCTTGGGAAATCACATCAGTTGGTTTAAATAGTTTGT
336 CCTTCGAGCA-ATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * *
28598307 C-TTTCTGTAAAAAAGTTTTGGTGTTTCAATT
400 CAATT-TGTAAACAAGTTTTGGTCTTTGAATT
** * * * *
28598338 AAATTCTTATTTATGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTTTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * * * *
28598403 CTTTTACGAGTTCATTTATTACTTCGGTTCCTTCAAGTATTCAAGAAGATCCATTCGTACCAGCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * * ** *
28598468 ATTTTCCGAGCATTCCATGCACGAGAAATTGCATCATTTGGTTTAAATAGTTTGTCAT-TTTGTA
131 ATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTT-TA
** * * * * *
28598532 AACAACATTTGGTCTTTGAATTAAAATCTTTTTTACGTGTGAATTATTTCTCTTTTGGTTCTTGG
195 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * *
28598597 ACGAACATCCGATCTTGTCAAACTTTTACGAGTTTTTTTATAACTTCGGTACCTTAAAGTATTCA
260 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGTATTCA
* **
28598662 AGACGATCCATTCCCTT-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATCCGGT
324 AGACGATCCATT-CCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* * *
28598726 CTAAATAG-TTGTCACTTTGCAAACAAGTTTTGGTCTTTAAATT
387 CTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
*
28598769 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** * * * * *
28598834 CTTTTTTGAGTTCTTTTTTAACTTCAGTTCATTAAAGTATTCAAAACAATCCATTCCTTCGATCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * *
28598899 A--TTT------TTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTTTAA
131 ATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTTTAA
* * * *
28598956 ATAAGTTTTGGTCTTTGGAA-TAAAAATTTATTTACGTGACAATTTTTTCT-TACTTGGTTCTTG
196 ACAAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTG
* * * * * *
28599019 GATGAACTTCTGATCTTGTCCAACTTTTACGAGTTCTTTTATAACTTCTGTTCATTAAAGTATTC
259 GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGTATTC
* * * * *
28599084 AAGACGATCCATTCCTTCCAGTAATTTTTCGAACATTCCATGCTCGGGAAATCACATCAGTTAGT
323 AAGACGATCCATTCCTTCGAGCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* * * * *
28599149 TTCAATAGTTTGTCATTTTGTAAACAAGTTTTGATGTTTGAATT
387 CTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * * *
28599193 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * * * * *
28599258 CTTTTACCAGTTCTTTTATAACTTTGGTTCTTTATAGTATTCAAGATGATACTTTCCCTCGAGCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * * **
28599323 ATTTTCCGAACATTCCTTGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCAGT-TTTTA
131 ATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCA-TATTTTA
** * *
28599387 TAA-AACATTTGGTCTTTGAATTAAAAACTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTG
195 -AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * *
28599451 GATGAACTTCC-AATCTTGTCAAACTTTTATGAGTTCTTTTATAAGTTCGTTTCCTTAAAGTATT
259 GACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGTATT
* * * * * * *
28599515 CAAGACGATCCATTCCTTCGAGCACTTTTCCGAACAATACTTGCTTGGGAAATCGCATCATTTTG
322 CAAGACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCATGCTCGGGAAATCGCATCATTTGG
* * * **
28599580 TCGAAATAGATTGTCATTTTGTAAACAAGTTTTGGTCTTAAAATT
386 TCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * *
28599625 AAAAACTTATTTATGTGAAAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
28599688 CTTTTGCGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAAACGATCCGTTCCTTCGATCA
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
* * *
28599753 ATTTTT-GAAACATTCCATGCTCATGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTA
131 ATTTTTCG-AACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTTTA
* * * *
28599817 AATAAGTTTTGGTCTTTGGATTAAAAGCTTATTTACGTGACAATTGTTTCT-TACTTGGTTCTTG
195 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTG
* * * * * * *
28599881 GACAAACTTCTGATCTTATCCAACTTTTACGAGTTCTTTTATAATTTCGGTTCATTAAAGTATTC
259 GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAAAGTATTC
* * * * ** * *
28599946 CAGACGATCCATTCCTTCCAGTAATTTTCGAACATTCCATGCTCGGGAAATCAAATCAGTTGGTT
323 AAGACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* *
28600011 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTGAATT
388 TAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
* * *
28600054 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
28600119 CTTTTATGAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATT--AGA-GAATCCATTCCTTCGGTC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTTCGATC
* * * * **
28600181 AATTTTCCTAATATTTCATGCTCGTGAAATTGCATCATTTGGTCTAAATAGTTTCG-CAT-TATT
130 AATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTT-GTCATAT-TT
* * *
28600244 TAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTT
193 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
28600309 GGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTCTATAACTTTGCTTCATTAAAGTATT
258 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTAAAGTATT
* * *
28600374 -AGAGACAATCCATTCCTTCGATCAATTTTTTGAATATTCCATGCT-GGTGAAATCGCATCATTT
322 CA-AGACGATCCATTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCGG-GAAATCGCATCATTT
* * * * * *
28600437 TGTCGAAATAGATTGTCATATTT-CAAAAAAGTTTTGGTCTTTGGATT
384 GGTCTAAATAGTTTGTCA-ATTTGTAAACAAGTTTTGGTCTTTGAATT
*
28600484 AAAAACTTATTTATGTGA
1 AAAAACTTATTTACGTGA
28600502 TGATATGAGC
Statistics
Matches: 6017, Mismatches: 1103, Indels: 591
0.78 0.14 0.08
Matches are distributed among these distances:
422 5 0.00
423 211 0.04
424 153 0.03
425 8 0.00
426 4 0.00
427 8 0.00
428 156 0.03
429 314 0.05
430 896 0.15
431 1796 0.30
432 1336 0.22
433 261 0.04
434 25 0.00
435 115 0.02
436 155 0.03
437 114 0.02
438 5 0.00
439 6 0.00
440 6 0.00
441 2 0.00
442 10 0.00
443 4 0.00
444 17 0.00
445 4 0.00
446 4 0.00
447 1 0.00
448 4 0.00
449 3 0.00
450 8 0.00
451 20 0.00
452 12 0.00
453 10 0.00
454 19 0.00
455 18 0.00
456 10 0.00
457 6 0.00
458 1 0.00
461 6 0.00
462 4 0.00
463 12 0.00
464 2 0.00
465 2 0.00
466 1 0.00
469 1 0.00
470 2 0.00
471 14 0.00
472 4 0.00
473 6 0.00
476 1 0.00
477 6 0.00
478 12 0.00
479 18 0.00
480 19 0.00
481 10 0.00
482 12 0.00
483 21 0.00
484 9 0.00
485 4 0.00
486 6 0.00
487 1 0.00
488 4 0.00
489 4 0.00
490 15 0.00
491 4 0.00
492 11 0.00
493 2 0.00
494 6 0.00
495 6 0.00
496 4 0.00
497 3 0.00
498 3 0.00
499 6 0.00
500 7 0.00
501 2 0.00
502 1 0.00
503 5 0.00
504 3 0.00
505 3 0.00
506 8 0.00
507 3 0.00
508 2 0.00
509 8 0.00
510 4 0.00
511 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (430 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCA
ATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTGTCATATTTTAA
ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
CGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGTTCCTTAAAGTATTCAAG
ACGATCCATTCCTTCGAGCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
ATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATT
Found at i:28601084 original size:80 final size:79
Alignment explanation
Indices: 28600952--28601108 Score: 269
Period size: 80 Copynumber: 2.0 Consensus size: 79
28600942 TACAAGCACT
* * *
28600952 AATTTCATTTTAACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAAT
1 AATTTCATTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAAC
28601017 TGAAAAGGCATGTC
66 TGAAAAGGCATGTC
*
28601031 AATTTCATTTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAG
1 AATTTCA-TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAA
28601096 CTGAAAAGGCATG
65 CTGAAAAGGCATG
28601109 GCATTTCTCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 7 0.10
80 66 0.90
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (79 bp):
AATTTCATTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAAC
TGAAAAGGCATGTC
Found at i:28601605 original size:48 final size:48
Alignment explanation
Indices: 28601541--28601660 Score: 188
Period size: 48 Copynumber: 2.5 Consensus size: 48
28601531 TGAATGCAAG
* *
28601541 GCATTTAACAAACAAAATAGTTAATAATGCAGATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
* * *
28601589 GCATTTAACAAACAAAACACTTAATGATGCAGATTATTAAACAAATAT
1 GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
28601637 GCATTTAACAAA-AAAACACTTAAT
1 GCATTTAACAAACAAAACACTTAAT
28601661 GAAGCACAAG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 12 0.18
48 55 0.82
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.26
Consensus pattern (48 bp):
GCATTTAACAAACAAAACACTTAATAATGCAGATTACTAAACAAAGAT
Found at i:28610052 original size:17 final size:17
Alignment explanation
Indices: 28610015--28610052 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
28610005 TTTTTTATTT
*
28610015 TTTTCTTTTTCTCCTAT
1 TTTTCTTTTTCTCCTAC
28610032 TTTTCTTTTT-TCTCTAC
1 TTTTCTTTTTCTC-CTAC
28610049 TTTT
1 TTTT
28610053 TTGATCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTCTTTTTCTCCTAC
Found at i:28610955 original size:25 final size:24
Alignment explanation
Indices: 28610914--28610964 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
28610904 TTAAAACAAC
28610914 TTCTTAAAAAAAACTC-AAGAGCAA
1 TTCTTAAAAAAAACTCAAAGAG-AA
*
28610938 TTCTTGAAGAAAAACTCAAAGAGAA
1 TTCTT-AAAAAAAACTCAAAGAGAA
28610963 TT
1 TT
28610965 ATTATTAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 5 0.21
25 14 0.58
26 5 0.21
ACGTcount: A:0.51, C:0.14, G:0.12, T:0.24
Consensus pattern (24 bp):
TTCTTAAAAAAAACTCAAAGAGAA
Found at i:28613665 original size:12 final size:11
Alignment explanation
Indices: 28613646--28613677 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
28613636 TTTGCTACGT
28613646 AATTTTTTTTG
1 AATTTTTTTTG
28613657 AATTTTTTTTG
1 AATTTTTTTTG
28613668 AAGTTTTTTT
1 AA-TTTTTTT
28613678 AAAATCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (11 bp):
AATTTTTTTTG
Found at i:28614856 original size:48 final size:47
Alignment explanation
Indices: 28614784--28614903 Score: 195
Period size: 48 Copynumber: 2.5 Consensus size: 47
28614774 TTAATGCAAG
*
28614784 GCATTTAACAAATAAAACAGTTAATAATGCAGATTACTAAACAAAGAT
1 GCATTTAACAAA-AAAACACTTAATAATGCAGATTACTAAACAAAGAT
* *
28614832 GCATTTAACAAACAAAACACTTAATGATGCAGATTATTAAACAAAGAT
1 GCATTTAACAAA-AAAACACTTAATAATGCAGATTACTAAACAAAGAT
28614880 GCATTTAACAAAAAAACACTTAAT
1 GCATTTAACAAAAAAACACTTAAT
28614904 GAAGCATAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
47 12 0.18
48 56 0.82
ACGTcount: A:0.52, C:0.14, G:0.09, T:0.25
Consensus pattern (47 bp):
GCATTTAACAAAAAAACACTTAATAATGCAGATTACTAAACAAAGAT
Found at i:28615633 original size:195 final size:195
Alignment explanation
Indices: 28615331--28615684 Score: 530
Period size: 195 Copynumber: 1.8 Consensus size: 195
28615321 ATTTTTCGAA
* * * * *
28615331 CATTCCGTGCTCAGGAAATCACATCATTTGGTCTCAATAGTTTGTCAATTTGTAAACAGCTTTTG
1 CATTCCATGCACAGGAAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACATTTG
* * *
28615396 GTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTAGTTATTTGACGAACTT-TC
66 GTCTTTGAATAAAAATCTTATTTACGTGAGAATTATTTCTCTCTTAGTTATTGGACGAACTTCT-
*
28615460 GAACTAGTCAAACTTTTACGAGTTCTTTTACTCAAGACGATCCATTCCTACCAGCAATATTCTAA
130 GAACTAGTCAAACTTTAACGAGTTCTTTTACTCAAGACGATCCATTCCTACCAGCAATATTCTAA
28615525 G
195 G
** *
28615526 CATTCCATGCACAGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTG
1 CATTCCATGCACAGGAAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACATTTG
* * *
28615591 GTCTTTGAATAAAAATTTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTG
66 GTCTTTGAATAAAAATCTTATTTACGTGAGAATTATTTCTCTCTTAGTTATTGGACGAACTTCTG
* * *
28615656 ATCTTGTGAAACTTTAACGAGTTCTTTTA
131 AACTAGTCAAACTTTAACGAGTTCTTTTA
28615685 TAACTTCGGT
Statistics
Matches: 140, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
195 139 0.99
196 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (195 bp):
CATTCCATGCACAGGAAATCACATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACAACATTTG
GTCTTTGAATAAAAATCTTATTTACGTGAGAATTATTTCTCTCTTAGTTATTGGACGAACTTCTG
AACTAGTCAAACTTTAACGAGTTCTTTTACTCAAGACGATCCATTCCTACCAGCAATATTCTAAG
Found at i:28616262 original size:215 final size:216
Alignment explanation
Indices: 28615491--28618366 Score: 3158
Period size: 216 Copynumber: 13.4 Consensus size: 216
28615481 GTTCTTTTAC
* * * * * * * **
28615491 TCAAGACGATCCATTCCTACCAGCAATATT-CTAAGCATTCCATGCACAGGAAATCGTATCATTT
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAA-CATTCCATGCTCGGGAAATCACATCATTT
* * *
28615555 GGTCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATAAAAATTTTATTTACGTGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGA
* *
28615620 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTGAAACTTTAACGAGTTCTTTTA
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTA
*
28615685 TAACTTCGGTTCCTTAAAGTTT
195 TAACTTCGGTTCCTTAAAGTAT
* *
28615707 TCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCGCGGGAAATCACATCATTTG
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* ** * * * *
28615772 GTCTGAATAGTTTGTCATTTTGTAAACAGGTTTTGGTGTTTAAATTAAAAACTTATTTAAGTGAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
* ** *
28615837 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAATCTTGTCAAACTTTTACTAGTTCTTTTAT
131 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTAT
* * *
28615902 AACTTCAGTTCATTAAATTAT
196 AACTTCGGTTCCTTAAAGTAT
* ** * * * * *
28615923 TCAAGAAGATCCATTCCTTCGATCAATTTTCCAAATATTCTATGCTCGTGAAATCGCATCATTTG
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* * * * * *
28615988 GTCTAAATAGATTGTC-TAATT-TAAAAAACGTTTTGGTCTTTGGATTAAAAACTTATTTACATG
66 GTCTAAATAGTTTGTCAT-TTTGTAAACAAC-TTTTGGTCTTTGAATTAAAATCTTATTTACGTG
* * *
28616051 AGAATTATTTCTCTCTTGATTC-TGTGACGAACTTCTGAACTTGTCAAACTTTTACAAGTTCTTT
129 AGAATTATTTCTCTCTTGGTTCTTG-GACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTT
* *
28616115 TATAACTT-TG-TCCCTAGAAGTAT
193 TATAACTTCGGTTCCTTA-AAGTAT
* **
28616138 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGTTTTGGAAATCACATCATTTG
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* *
28616203 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAATCTTATTTACATGAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
* * *
28616268 AATTATTTCTCTCTTAGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTCAT
131 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTAT
*
28616333 AACTTCGGTTCTTTAAAGTAT
196 AACTTCGGTTCCTTAAAGTAT
* ** * *
28616354 TCAAGA-GATCCATTCCTTTGAGAAATTTTTTGAACATTCTATGCTCGAGAAATCACATCATTTG
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* *
28616418 GTCTAAATAGTTTGTAAATTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
* * * * *
28616483 AATTATTTCACTCTTTGTTCTTGGACGAGCTT-TAGATCTTGCCAAACTTTTACGAGTTCTTTCA
131 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCT-GATCTTGTCAAACTTTTACGAGTTCTTTTA
* *
28616547 AAACTTCGATTCCTTAAAGTAT
195 TAACTTCGGTTCCTTAAAGTAT
* ** * * * * *
28616569 TCAAGATGATCCATTCCTTCCTGTAATTTTCCTAACATTCCATGCTCGGGAAGTCATATCATTTC
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* * * * * * * * *
28616634 ATTTAAATAGTTTATCAATTTGTAAACAAGTTTTTGT-GTAGTAATTAAAATCTTATTTGCGTGA
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG-AATTAAAATCTTATTTACGTGA
** * * * * *
28616698 GAATTATTTCTCTCTTCATTCTTTGACGAACTTCTGAACTAGTCAGACTTTTAGGAGTTCTTTTA
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTA
* * ***
28616763 TAACTAT-GGGTCCATAGTTTAT
195 TAACT-TCGGTTCCTTAAAGTAT
* * * ** * ** *
28616785 TCAAGACGATACTTTCCCTT-GAGCAATTTTTTGAGCATTCCATGGACGGGAAATCTCATCATTT
1 TCAAGACGATCCATT-CCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTT
* * *
28616849 GATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTATGTACGTGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGA
* *
28616914 GAATTATTTCTCTCTTAGTTCTTGGACGAACTT-TCGATCTTGTCAAACTTTTACGAATTCTTTT
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCT-GATCTTGTCAAACTTTTACGAGTTCTTTT
* *
28616978 ATAACTACGGTTCCTCAAAGTAT
194 ATAACTTCGGTTCCTTAAAGTAT
* ** * * *
28617001 TCAATATAATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCATATCATTTG
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* * *
28617066 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTATTT-AACTTAAAAACTTATTTACGTGA
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAATCTTATTTACGTGA
* * * * *
28617130 GAATT-GTT-TCTC----TTCTTGGATGAATTTCCGATCTTGTCAAACTTTTATGAGTTCTTTTA
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTA
** *
28617189 CGACTTC-GTTCATTAAAGTAT
195 TAACTTCGGTTCCTTAAAGTAT
* * ** *
28617210 TCAAGACGATCCAGT-CTTACGAGAAATTTTCCGAACATTCCATGTTCAAGAAATCGCATCATTT
1 TCAAGACGATCCATTCCTT-CGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTT
* * * * *
28617274 GGTCTAAATAGTTTGCCCTTTTGTAAACAACTTTTGGTCATTGAATTTAAATCTTATTTACATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGA
* * * ** * *
28617339 GAATTATTTCTCTCTTAGTTCTTGGATGAATTTCCAATCTTGTCAAACTTTTATGAGTTCTTTCA
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTA
* *
28617404 TAAATTCGGTTCTTTAAAGTAT
195 TAACTTCGGTTCCTTAAAGTAT
* * * * *
28617426 TCAAAACGATCCATTCCTTTGAGAAATTTTTCGAACATTCCATGCTCAGGAAGTCACATCATTTG
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* * * * * *
28617491 GTCTAAATAGTTTGACAATTTGAAAATAGCTTTTGGTCTTTGAATTAAAATCTTATTTACGTTAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
* *
28617556 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTCAT
131 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTAT
*
28617621 AACTTTGGTTCCTTAAAGTAT
196 AACTTCGGTTCCTTAAAGTAT
* * * * * * *
28617642 TTAGGACGGATCCATTCCTTCCAGCAATTTTCTGAACATTCCATGCTCGAGAAATCATATCATTT
1 TCAAGAC-GATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTT
* * * * * * * * *
28617707 GGTTTAAATAGTTTTTCAATTTGTAATCAAGTTTTTGTGTATGAATTAAAATCATATTTACGTGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGA
* * * * * * * *
28617772 GAATTGTTTCACTCTTGGTTCTTTGACAAACTTCCGAACTAGTCAAACTTTTACGATTTCTTTTA
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTA
*
28617837 TAACTTCGGCTCCTTAAAGTAT
195 TAACTTCGGTTCCTTAAAGTAT
* * * * ** * * * * * *
28617859 TCAAGACTATACTTTCCCTCGACCAATTTCCCAAACATTCCTTGCTCGGGAAATCGCATCGTTTT
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* * * * * *
28617924 ATGTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTTTTTAAATTAAAAACTTATTTACGTGAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
* * * * *
28617988 AATTGTTTCTCTCTTGGTTCTTAGACAAACTT-TCGAACTTTTCAAACTTTTACGAGTTCTTTTA
131 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCT-GATCTTGTCAAACTTTTACGAGTTCTTTTA
* *
28618052 TAACTTCGGCTACTTAAAGTAT
195 TAACTTCGGTTCCTTAAAGTAT
* * * * * * * * * * * * * *
28618074 TGAAGATGATACTTTTCTTCGAGTACTCTTCCGAACAATACTTGCTTGGGAAATCGCATCGTTTG
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
* * * * *
28618139 ATCTAAATAG-TTGTCATTTTGTAAACAAGTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
* * * *
28618203 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTGCAAGTTATTTTAT
131 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTAT
*
28618268 AACTTCGGTTCATTAAAGTAT
196 AACTTCGGTTCCTTAAAGTAT
* * * ** * * * *
28618289 TTAAGACAATCCATTCCTTCAATCAATTTT-TGAAATATTCCATGCTCGTGAAAAT-GCATCATT
1 TCAAGACGATCCATTCCTTCGAGAAATTTTCCG-AACATTCCATGCTCG-GGAAATCACATCATT
*
28618352 TGGTTTAAATAGTTT
64 TGGTCTAAATAGTTT
28618367 TGGTATTTGG
Statistics
Matches: 2233, Mismatches: 389, Indels: 76
0.83 0.14 0.03
Matches are distributed among these distances:
208 3 0.00
209 120 0.05
210 49 0.02
211 4 0.00
214 9 0.00
215 785 0.35
216 1063 0.48
217 200 0.09
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCACATCATTTG
GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
AATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGATCTTGTCAAACTTTTACGAGTTCTTTTAT
AACTTCGGTTCCTTAAAGTAT
Found at i:28617015 original size:432 final size:431
Alignment explanation
Indices: 28615491--28618769 Score: 3320
Period size: 432 Copynumber: 7.7 Consensus size: 431
28615481 GTTCTTTTAC
* * * * * *
28615491 TCAAGACGATCCATTCCTACCAGCAATATT-CTAAGCATTCCATGCAC-AGGAAATCGTATCATT
1 TCAAGACGATCCATTCCTTCGAGCAATTTTCCGAA-CATTCCATGCTCGA-GAAATCGCATCATT
* * *
28615554 TGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATAAAAATTTTATTTACGTG
64 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTG
* * *
28615619 AGAATTATTTCTCTCTTGGTTCTTGGACGAAC-TTCTGATCTTGTGAAACTTTAACGAGTTCTTT
129 AGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTC-GATCTTGTCAAACTTTTACGAATTCTTT
*
28615683 TATAACTTCGGTTCCTTAAAGTTTTCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACATTCC
193 TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACATTCC
* * *
28615748 ATGCGCGGGAAATCACATCATTTGGTCTGAATAGTTTGTCATTTTGTAAACAGGTTTTGGTGTTT
258 ATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTT
* *
28615813 AAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AATCTT
323 AAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTT
* ** * *
28615877 GTCAAACTTTTACTAGTTCTTTTATAACTTCAGTTCATTAAATTAT
387 GTCAAACTTTTACGAGTTCTTTTATAACTTGGGTCCA-TAAAGTAT
* * * * * *
28615923 TCAAGAAGATCCATTCCTTCGATCAATTTTCCAAATATTCTATGCTCGTGAAATCGCATCATTTG
1 TCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTG
* * * * * *
28615988 GTCTAAATAGATTGTC-TAATT-TAAAAAACGTTTTGGTCTTTGGATTAAAAACTTATTTACATG
66 GTCTAAATAGTTTGTCAT-TTTGTAAACAAC-TTTTGGTCTTTGAATTAAAATCTTATTTACGTG
* *
28616051 AGAATTATTTCTCTCTTGATTC-TGTGACGAAC-TTCTGAACTTGTCAAACTTTTAC-AAGTTCT
129 AGAATTATTTCTCTCTTGGTTCTTG-GACGAACTTTC-GATCTTGTCAAACTTTTACGAA-TTCT
* * *
28616113 TTTATAACTT-TG-TCCCTAGAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCCGAACAT
191 TTTATAACTTCGGTTCCTTA-AAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACAT
* ** * *
28616176 TCCATGTTTTGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
255 TCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTG
* * * * * *
28616241 TTTGAATTTAAATCTTATTTACATGAGAATTATTTCTCTCTTAGTTCTTGGACGAACTTCCGATC
320 TTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * **
28616306 TTGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCTTTAAAGTAT
385 TTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGGTCCATAAAGTAT
* * ** * *
28616354 TCAAGA-GATCCATTCCTTTGAGAAATTTTTTGAACATTCTATGCTCGAGAAATCACATCATTTG
1 TCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTG
* *
28616418 GTCTAAATAGTTTGTAAATTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
* * * * * * * *
28616483 AATTATTTCACTCTTTGTTCTTGGACGAGCTTTAGATCTTGCCAAACTTTTACGAGTTCTTTCAA
131 AATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAATTCTTTTAT
* ** * *
28616548 AACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCCTGTAATTTTCCTAACATTCCATG
196 AACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATG
* * ** * * * * *
28616613 CTCGGGAAGTCATATCATTTCATTTAAATAGTTTATCAATTTGTAAACAAGTTTTTGTGTAGT-A
261 CTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGT-TTAA
* * ** * * *
28616677 ATTAAAATCTTATTTGCGTGAGAATTATTTCTCTCTTCATTCTTTGACGAACTTCTGAACTAGTC
325 ATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * ***
28616742 AGACTTTTAGGAGTTCTTTTATAACTATGGGTCCATAGTTTAT
390 AAACTTTTACGAGTTCTTTTATAACT-TGGGTCCATAAAGTAT
* * ** * ** * *
28616785 TCAAGACGATACTTTCCCTT-GAGCAATTTTTTGAGCATTCCATGGACGGGAAATCTCATCATTT
1 TCAAGACGATCCATT-CCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTT
* * *
28616849 GATCTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTATGTACGTGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGA
*
28616914 GAATTATTTCTCTCTTAGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAATTCTTTTA
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAATTCTTTTA
* * * * * *
28616979 TAACTACGGTTCCTCAAAGTATTCAATATAATCCATTCCTTCGAGCAATTTTCCAAACATTCCAT
195 TAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACATTCCAT
* *
28617044 GCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTATTTAA
260 GCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTAA
* * * * *
28617109 CTTAAAAACTTATTTACGTGAGAATT-GTT-TCTC----TTCTTGGATGAATTTCCGATCTTGTC
325 ATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* ** * *
28617168 AAACTTTTATGAGTTCTTTTACGACTT-CGTTCATTAAAGTAT
390 AAACTTTTACGAGTTCTTTTATAACTTGGGTCCA-TAAAGTAT
* * * *
28617210 TCAAGACGATCCAGT-CTTACGAGAAATTTTCCGAACATTCCATGTTCAAGAAATCGCATCATTT
1 TCAAGACGATCCATTCCTT-CGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTT
* * * * *
28617274 GGTCTAAATAGTTTGCCCTTTTGTAAACAACTTTTGGTCATTGAATTTAAATCTTATTTACATGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGA
* * * * * *
28617339 GAATTATTTCTCTCTTAGTTCTTGGATGAA-TTTCCAATCTTGTCAAACTTTTATGAGTTCTTTC
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTT-CGATCTTGTCAAACTTTTACGAATTCTTTT
* * * * * *
28617403 ATAAATTCGGTTCTTTAAAGTATTCAAAACGATCCATTCCTTTGAGAAATTTTTCGAACATTCCA
194 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACATTCCA
* * * * *
28617468 TGCTCAGGAAGTCACATCATTTGGTCTAAATAGTTTGACAATTTG-AAA-ATAGCTTTTGGTCTT
259 TGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AG-TTTTGGTGTT
* * * *
28617531 TGAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTT
322 TAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * *
28617596 GTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTAT
387 GTCAAACTTTTACGAGTTCTTTTATAAC-TTGGGTCCATAAAGTAT
* * * * **
28617642 TTAGGACGGATCCATTCCTTCCAGCAATTTTCTGAACATTCCATGCTCGAGAAATCATATCATTT
1 TCAAGAC-GATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTT
* * * * * * * * *
28617707 GGTTTAAATAGTTTTTCAATTTGTAATCAAGTTTTTGTGTATGAATTAAAATCATATTTACGTGA
65 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGA
* * * * * * * *
28617772 GAATTGTTTCACTCTTGGTTCTTTGACAAACTTCCGAACTAGTCAAACTTTTACGATTTCTTTTA
130 GAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAATTCTTTTA
* * * * ** * * *
28617837 TAACTTCGGCTCCTTAAAGTATTCAAGACT-ATACTTTCCCTCGACCAATTTCCCAAACATTCCT
195 TAACTTCGGTTCCTTAAAGTATTCAAGA-TGATCCATTCCTTCGAGAAATTTTCCGAACATTCCA
* * ** * *
28617901 TGCTCGGGAAATCGCATCGTTTTATGTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTTTTTA
259 TGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTA
* * * * *
28617965 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACAAACTTTCGAACTTTT
324 AATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * *
28618030 CAAACTTTTACGAGTTCTTTTATAACTTCGGCTACTTAAAGTAT
389 CAAACTTTTACGAGTTCTTTTATAACTT-GGGTCCATAAAGTAT
* * * * * * * * * * * * * *
28618074 TGAAGATGATACTTTTCTTCGAGTACTCTTCCGAACAATACTTGCTTGGGAAATCGCATCGTTTG
1 TCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTG
* * * * *
28618139 ATCTAAATAG-TTGTCATTTTGTAAACAAGTTTTTGTCTTTAAATTAAAAACTTATTTACGTGAG
66 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
* * *
28618203 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTGC-AAGTTATTTTA
131 AATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAA-TTCTTTTA
* * ** * ** * *
28618267 TAACTTCGGTTCATTAAAGTATTTAAGACAATCCATTCCTTCAATCAATTTT-TGAAATATTCCA
195 TAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCG-AACATTCCA
* * * *
28618331 TGCTCGTGAAAAT-GCATCATTTGGTTTAAATA----GT--TTTGGT-----A--TTT-G-G---
259 TGCTCG-GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTT
* * * * * *
28618377 --ATTAAAAATTTACTTACGTCACAAATT-TTTCTCTATTGGTTCTTGGACGAACTTCCGATCTT
323 AAATTAAAAACTTATTTACGTGA-GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * * *
28618439 GTCCAACTTTTACGAGTTCTTTTATAACTTCGGTTCATTTAAGTAT
387 GTCAAACTTTTACGAGTTCTTTTATAACTTGGGTCCA-TAAAGTAT
* * * * * *
28618485 TCAAGATGATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTTG-GAAAATCACAGT-AGT
1 TCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAG-AAATCGCA-TCATT
* * * * * * * *
28618548 TGGTTTAAATAGTTTGTCATTCTATAAACAAGTTTTGGTGTTCGAATTGAAATCTTATTTACATG
64 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTG
* * * * * * * *
28618613 AGAATTCTTTCTCTCTAGGTTGTTGAATGAACTTCCGAACTTGAT-AAACTTTTACGAGTTCTTT
129 AGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTG-TCAAACTTTTACGAATTCTTT
* * * * * * **
28618677 TATAACTTTGGTTCCTTAAACTATTCAAGACGATCCATTCCTACCAGCAATTTTCCGAGTATTCC
193 TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACATTCC
* **
28618742 ATGCACGGGAAATTGCATCATTTGGTCT
258 ATGCTCGGGAAATCACATCATTTGGTCT
28618770 TTGAATTAAA
Statistics
Matches: 2358, Mismatches: 434, Indels: 130
0.81 0.15 0.04
Matches are distributed among these distances:
410 4 0.00
411 142 0.06
412 171 0.07
413 3 0.00
417 1 0.00
418 3 0.00
420 1 0.00
423 4 0.00
424 12 0.01
425 298 0.13
426 44 0.02
427 6 0.00
429 1 0.00
430 326 0.14
431 513 0.22
432 590 0.25
433 233 0.10
434 6 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (431 bp):
TCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTG
GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAG
AATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAATTCTTTTAT
AACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGAAATTTTCCGAACATTCCATG
CTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTAAA
TTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
AACTTTTACGAGTTCTTTTATAACTTGGGTCCATAAAGTAT
Found at i:28618515 original size:196 final size:195
Alignment explanation
Indices: 28618181--28618562 Score: 529
Period size: 196 Copynumber: 1.9 Consensus size: 195
28618171 TTGTCTTTAA
* * * *
28618181 ATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTC
1 ATTAAAAACTTACTTACGTCAAAATTATTTCTCTATTGGTTCTTGGACGAACTTCCGATCTTGTC
* *
28618246 AAACTTTTGCAAGTTATTTTATAACTTCGGTTCATTAAAGTATTTAAGACAATCCATTCCTTCAA
66 AAACTTTTACAAGTTATTTTATAACTTCGGTTCATTAAAGTATTCAAGACAATCCATTCCTTCAA
* *
28618311 TCAATTTTT-GAAATATTCCATGCTCGTGAAAATGCATCA-T-TTGGTTTAAATAGTTTTGGTAT
131 GCAATTTTTCG-AACATTCCATGCTCG-GAAAAT-CA-CAGTATTGGTTTAAATAGTTTTGGTAT
28618373 TTGG
192 TTGG
*
28618377 ATTAAAAATTTACTTACGTCACAAATT-TTTCTCTATTGGTTCTTGGACGAACTTCCGATCTTGT
1 ATTAAAAACTTACTTACGTCA-AAATTATTTCTCTATTGGTTCTTGGACGAACTTCCGATCTTGT
* * * * ** *
28618441 CCAACTTTTACGAGTTCTTTTATAACTTCGGTTCATTTAAGTATTCAAGATGATCCATTCCTTCC
65 CAAACTTTTACAAGTTATTTTATAACTTCGGTTCATTAAAGTATTCAAGACAATCCATTCCTTCA
*
28618506 AGCAATTTTTCGAACATTCCATGCTTGGAAAATCACAGTAGTTGGTTTAAATAGTTT
130 AGCAATTTTTCGAACATTCCATGCTCGGAAAATCACAGTA-TTGGTTTAAATAGTTT
28618563 GTCATTCTAT
Statistics
Matches: 164, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
193 2 0.01
194 3 0.02
195 6 0.04
196 148 0.90
197 5 0.03
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (195 bp):
ATTAAAAACTTACTTACGTCAAAATTATTTCTCTATTGGTTCTTGGACGAACTTCCGATCTTGTC
AAACTTTTACAAGTTATTTTATAACTTCGGTTCATTAAAGTATTCAAGACAATCCATTCCTTCAA
GCAATTTTTCGAACATTCCATGCTCGGAAAATCACAGTATTGGTTTAAATAGTTTTGGTATTTGG
Found at i:28619445 original size:216 final size:216
Alignment explanation
Indices: 28618762--28653369 Score: 22907
Period size: 216 Copynumber: 159.7 Consensus size: 216
28618752 AATTGCATCA
* * * * * * *
28618762 TTTGGTCTTTGAATTAAAATCTTATTTACGTGTGAATTATTTCTCTTTTGGATCTTGGATGAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * ** * *
28618827 TCTGATCCTGTCAAACTTTGACAAATTCTTTTATAACTTCAGTTCCTCAAAG---T--A-ACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28618886 TCATTCCCTCGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTCGGTCTAAAT-G
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* *
28618950 GTTGTCATTTTGCAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* *
28618971 TTTGGTCTTT-AAGTT-AAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
1 TTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
28619034 TTCTGAACTTGTCAAGCTTTTGCGAGTTCTTTTATAACTTCGGTTCATTAAATTATTCAAAACAA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * *
28619099 TCCA-TCCTTTGATCAA-TTTTCAAAATATTCCATGCTC-ATGAAATCACATCATTTGGTCTAAA
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAA
* * *
28619161 TAGCTTGTCATTTTTTTAAA-AA-A
193 TAGTTTGTCA-TTTTGTAAACAAGT
* * * * * *
28619184 ATTGGTCTTTGGATTAAAAAACTTATTTACGTGACAATTGTTTCTCACTTGGTTCTTAGACAAAC
1 TTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
28619249 TTCTGATCTTGTTC-AACTTTTACGAGTTCTTTTACAACTTTGGTTCATTTAAGTATTCAAGACA
65 TTCCGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * * *
28619313 ATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTC-AGGAAATCACATCAGTGGGTTTAAA
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAA
* * *
28619377 CAATTTGCCATTTTGTAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * *
28619401 TTTGCTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28619466 TCCAAACTTGTTAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * *
28619530 TCCATTCCTTCGATCAATTTTTCGAACATTCTATGCTCGTGAAATCGCATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28619595 GTTTCG-CATTATT-TAAACTAGT
195 GTTT-GTCATT-TTGTAAACAAGT
* * * * * *
28619617 TTTGGTCTTTGGATTAAAAACATATTTACATGAGAATTATTTCTCCCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28619682 TCCGAACTTGTCAAACTTTTACGATTTCTTTTTATAATAACTTTGCTTCCTCAAAGTATT-AGAG
66 TCCGAACTTGTCAAACTTTTACGAGTTC--TTT-T-ATAACTTTGGTTCCTTAAAGTATTCA-AG
* * * * * *
28619746 ACAATCCATTCATTCGATCAA-TTTTCTGAATATTCCATGCTCGTGAAATCGCATCATTTGTTCT
126 ACAATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCT
*
28619810 AAATAGATTGTCATATTT-TAAA-AAGT
190 AAATAGTTTGTCAT-TTTGTAAACAAGT
* * *
28619836 TTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGATTCTCT-GACGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC
* * * ***
28619900 TTCCGAAATTGTCAAACTTTTACAAGTTCTTTTATAACTTT-GTTCCTTAAAGTATTCAAAATGG
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * * *
28619964 T-CATTCCTTTGAGAAATTTTCCGAGCATTCCATGCTTGAGAAGTCATATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * * *
28620028 GTTTGACAATTTGAAAAC-AGC
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28620049 TTT-GTCTTTGAATTAAAATCTTATTTACGTTACAATT-ATTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28620112 TCCGATCTTATCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATTCAGGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28620177 CCATTCCTTCTAGTAATTTTCCGAACATTCCATGCTCGAGAAATCATATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* * *
28620242 TTTTTCAATTTGTAATCAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * * * * * * * *
28620263 TTTTGTGTATGAATTAAAATCATATTTACGCGAGAATTGTTTCACTCTTGCTTCTTTGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28620328 TCTGAACTAGTTAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * ** * * *** * * *
28620393 ACTTTCCCTCGAGCAATTTCCCGAACATTCCTTGCTCGGGAAATTGTATCGTTTGATGTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28620458 -TTGTCATTTTGTAAACAATT
196 TTTGTCATTTTGTAAACAAGT
* * * *
28620478 TTTGTTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28620543 TCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTGAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * * * * *
28620608 ACTTTCCTTCGAGCACTCTTCCAAACAATACTTGCT-TATCAAACTTTTACGAGTTC-TTGGACG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAA---TCAC-A--TCATT---TG
** * * ** ** *
28620671 AGTTCTTTCATAACTTTGGTTCCTTAAAGTATTCAGGACGA
186 -G-TC-TAAAT-AGTTT-G-TCATT-TTGTAAACA--A-GT
**** *** * * ** * *
28620712 TCCATTCCTTCTAGTAATTTTCCGAAC--ATTCCATGCTCGAGAAATCATATC-AT-TTGG-T-T
1 TTTGGT-CTT-T-G-AA--TTAAAAACTTATT-TACG-T-GAG-AATTGTTTCTCTCTTGGTTCT
* ** ** * * * * * * *** * *
28620771 T-AAATAGTTTTTC-AATTTGTAATCAAGTTTT-TGTGTATGAATTAAAATCATATT--TACGC-
56 TGGACGA-ACTTCCGAACTTGTCA--AACTTTTACGAGT-TCTTTTATAA-C-T-TTGGTTC-CT
* * ** *** * ** ** **
28620830 GAGAATTATTTC---ACTCTTGGTT-CTTTGA-CAA-ACTTCTGAACTAGTTAAACTTTTACGAG
113 TA-AAGTA-TTCAAGACAATCCATTCCTTCGAGCAATTTTTC-GAAC-A-TTCCA-TGCT-CGAG
*** *** * * * * * * *
28620889 TTCTTTTATAACTTCGGTTCCTTAAAATA-TTCAAGACAATACTTTCCCTCGAGCAA-T
171 AAATCACATCA-TTTGG-T-C-T-AAATAGTT--TGTC-AT--TTT--GT-AAACAAGT
* * * *** * * *
28620946 TTCTCGAACATTCCTTG-CTCGGGAAA-TTGTAT-CGTTTGATGTAAATAGTTGTCAT-T-TT-G
1 TT-T-G----GTCTTTGAAT-TAAAAACTTATTTACG--TGA-G--AATTGTT-TC-TCTCTTGG
* *** ** * * ** * *
28621005 TAAACAATT-TTTGTTCTT--TAAATT-AAAAACTTATTTACGTGAGAAT-TGTTTCT--CTCTT
52 T--TC--TTGGACGAACTTCCGAACTTGTCAAAC-T-TTTAC--GAG-TTCT-TTTATAACT-TT
* * * * * * * ** * **
28621063 GGTT-GTTGGACGAACTTCCGAACTTGTCAA-AC-TT--TTACGAG--TTCTTTTATAACTTTGG
106 GGTTCCTT-AAAGTA-TT-C-AA---GACAATCCATTCCTT-CGAGCAAT-TTTTCGAACATTCC
* * * * * * *** * * ** * * * **
28621121 TTCCT-TA-AAGT-A-TTGAAGACGATACT--TTCCTTCGAGCACTCTTCCAAACAA-T
162 ATGCTCGAGAAATCACAT-CATTTGGT-CTAAATAGTTTG-TCA-TTTTGTAAACAAGT
* * * * * *
28621173 ACTT-G-CTTGGGAA-T-CACA-TTGTTTGATC-T-A-AATAGTTGTCAT-T-TTGTAAACAAGT
1 -TTTGGTCTT-TGAATTAAAAACTTATTT-A-CGTGAGAATTGTT-TC-TCTCTTG-------GT
* * * *** * ** * * * * * **
28621228 T-TTGGTCTTTAAATTAAAAACTTAT-TTAC-GTGA-GAATT-ATTTAT--CTCTTGGTTCATGG
53 TCTTGGAC--GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT-TTGGTTCCTTA
* * * * ** * **** ** ** ** **
28621286 ATGAACTTCCGAACTTGTCAAACTTTTACAAGTT-GTTTTATAACTTCGGTTCATTAAAGTATTC
115 AAGTA-TT-C-AA---GACAATCCATT-C--CTTCGAGCAAT-TTTTC-GAACATTCCA-TGCTC
* *
28621350 AAGACAATCCATTCCATCGATCAATT--TCCGAAATACTCCATGGTTGTCAAAACGCATCATTTG
168 GAGA-AAT-CA---CATC-AT---TTGGT-CTAAAT-----A--GTT-T------G--TCATTT-
* *
28621413 GTCTAAA-TAGT
206 -TGTAAACAAGT
* * * * * *
28621424 TTTGGTCTTTGGATTACAAACTTATTTACGGGACAATTTTTTCTCTATTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * * **
28621489 TCTGATCTTGTCCAACTTTTACGATTTCTTTTATAACTTTGGTTCATTTAAGTGTTCACGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * *
28621554 CCATTCCTTCCAGCAATTTGTCGAACATTCCATGCTTGGGAAATCACATCAGTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28621619 TTTGTCATTCTGTAAACAAGGT
196 TTTGTCATTTTGTAAACAA-GT
* *
28621641 TTTGTGTC--TGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAAC
1 TTTG-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
28621704 TTCCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACATTGGTTCCTTAAAGTATTAAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * *** *
28621769 TCCATTCCTACCAGCAATTTTTCGAGTGTTCCATGCATTG-GAAATCACATCATTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCACATCATTTGGTCTAAAT
* **
28621833 AGTTTGTCATTTTGGAAACAACA
194 AGTTTGTCATTTTGTAAACAAGT
* * * * * *
28621856 TTTGATCTTTGAATTAAAATCTTATTTACGTGTGAATTATTTCTCTTTTGGTTCTTGGACGAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * *
28621921 TCC-AATCTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTAATCAAGACGA
66 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28621985 TCTATTCCCTCGAGCAATTTTTCGTACATTCCATGCTTGGGAAATCACATCATTCGGTCTAAAT-
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* *
28622049 GGTTGTCATTTTGCAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28622071 TTTGGTCGTTAAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTCCTT-GATC-AAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-CGAAC
** * * * *
28622134 TTCCGAACTTGTCAAACTTTTGTGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
** * * * *
28622199 TCCATTCCTTCGATAAATTTTT-GAAATATTCGATGCTCGTGAAATCACATCGTTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * *
28622263 AGCTTGACATTTT-TCAAAAAAGT
194 AGTTTGTCATTTTGT-AAACAAGT
* * *
28622286 TTTGGTCTTTGGATTAAGAACTTAACCAAAACTTATTTATGTGACAATTGTTTCTCACTTGGTTC
1 TTTGGTC--T---TT--GAA-TT-A--AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * * * * *
28622351 TTTGACGAACTT-CTAATCTTGTCCACCTTTTACGAGTTCTTTTACAGCTTTGGTTCATTAAAGT
55 TTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGT
* * * * * * * *
28622415 ATTCAAGACGATCCACTCCTTCCAGTAATTTTTCGTACATTCCATGCTTGGGAAATCACATCAGT
119 ATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATT
*
28622480 TGGTTTAAATAGTTTGTCATTTTGTAAACAAGT
184 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * * *
28622513 TTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCCCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28622578 TCTGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCATAAATTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * * * *
28622642 TCCATTCCTTCGATCAATTTTTCGAACATTCCATGCTTGTGAAATCGCATCATTTAGTCAAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28622707 GTTTCG-CATTATT-TAAACTAGT
195 GTTT-GTCATT-TTGTAAACAAGT
* * * *
28622729 TTTGGTCTTTGCATTAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATG---T
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* **
28622791 TCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTACTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * * * ** *
28622855 TCCATTTCTTCGATCAATTTTTTGAATATTCCTTGCTCGTTAAATCGCATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * *
28622920 GATTGTCATATTTTTAAA-AACT
195 GTTTGTCAT-TTTGTAAACAAGT
* * * * *
28622942 TTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACAAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC
* * * * * * *
28623006 GTCTGAAATTGTCAAACTTTTACAAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28623070 TCCATTCCTTTGAG-AAATTTTCATAACATTCCATGCTCGGGAAGTCACACCATTTGGTCT-AA-
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * *
28623132 A---TGACAATTTGAAAAC-AGCT
194 AGTTTGTCATTTTGTAAACAAG-T
* *
28623152 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * **
28623217 TCTGATCTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATTCAGGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28623282 CCATTCCTTCCAGCTATTTTTCGAACATTCCATGCTCGAGAAATCATATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* * *
28623347 TTTTTCAATTTGTAATCAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * * * * * * * *
28623368 TTTTGTGTATGAATTAAAATCATATTTACGCGAGAATTATTTCACTCTTGGTTCTTTGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28623433 TCCGAACTAGTCAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACAA
66 TCCGAACTTGTC-AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * ** * * * *** * *
28623498 TACTTTCCCTCGAGCAATTTCCCGAACATTCCTTACTCGGGAAATTGTATCGTTT-GACGTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTC-TAAAT
*
28623562 AG-TTGTCATTTTGTAAACAATT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28623584 TTTGTTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
28623649 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTGAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * * * ** *
28623714 ACTTTCCTTCGAGCACTCTTCCAAACAATACTTGCTTG-GGAATCACATTGTTTGATCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
28623778 -TTGTCATTTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * *
28623798 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28623863 TCCGAACTTGTCAAACTTTTGCAAGTTGTTTTATAACTTCGGTTCATTAAAGTATTCAAGACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * ** * *
28623928 CCATTCCATCGATCAA-TTTTCGAA-ATACTCCATGGTTGTCAAAACGCATCATTTGGTCT--A-
131 CCATTCCTTCGAGCAATTTTTCGAACAT--TCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
28623988 A-------A-----T-----AGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * * * *
28623994 TTTGGTCTTTGGATAACAAACTTATTTACGGGACAATTTTTTCTCTATTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * * **
28624059 TCTGATCTTGTCCAACTTTTACAATTTCTTTTATAACTTCGGTTCATTTAAGTATTCAAGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28624124 CCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTTG-GAAAATCACAGT-AGTTGGTTTAAAT
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAG-AAATCACA-TCATTTGGTCTAAAT
* *
28624187 AGTTTGTCATTCTATAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * * * * * * *
28624210 TTTGGTGTTCGAATTGAAATCTTATTTACATGAGAATTCTTTCTCTCTAGGTTGTTGAATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28624275 TCCGAACTTGTTAAAC-TTTAAGAGTTC-TTTATAACATTGGTTCCTTAAAGTATTAAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * *** *
28624338 CCATTCCTACCAGCAATTTTTCGAGTGTTCCATGCATTG-GAAATCACATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCACATCATTTGGTCTAAATA
* **
28624402 GTTTGTCATTTTGGAAACAACA
195 GTTTGTCATTTTGTAAACAAGT
* * * * *
28624424 TTTGATCTTTGAATTAAAATCTTATTTACGTGTGAATTATTTCTCT-TTGGTTCTTGGACGAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * *
28624488 TCC-AATCTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTAATCAAGACGA
66 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28624552 TCTATTCCCTCGAGCAATTTTTCGTACATTCCATGCTTGGGAAATCACATCATTCGGTCTAAAT-
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* *
28624616 GGTTGTCATTTTGCAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28624638 TTTGGTCGTTAAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTCCTT-GATC-AAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-CGAAC
** * * * *
28624701 TTCCGAACTTGTCAAACTTTTGTGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
** * * * *
28624766 TCCATTCCTTCGATAAATTTTT-GAAATATTCGATGCTCGTGAAATCACATCGTTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * *
28624830 AGCTTGACATTTT-TCAAAAAAGT
194 AGTTTGTCATTTTGT-AAACAAGT
* * *
28624853 TTTGGTCTTTGGATTAAGAAGAACTTAACCAAAACTTATTTATGTGACAATTGTTTCTCACTTGG
1 TTTGGTC--T---TT-----GAA-TT-A--AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
* * * * * *
28624918 TTCTTTGACGAACTT-CTAATCTTGTCCACCTTTTACGAGTTCTTTTACAACTTTGGTTCATTAA
52 TTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
* * * * *
28624982 AGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGTACATTCCATGCTTGGGAAATCACATC
116 AGTATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATC
* *
28625047 AGTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGT
181 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * * * *
28625083 TTCGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCCCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28625148 TCTGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCATAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * * * *
28625212 TCCATTCCTTCGATCAATTTTTCGAACATTCCATGCTTGTGAAATCGCATCATTTAGTCAAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28625277 GTTCTG-CATTATT-TAAACTAGT
195 GTT-TGTCATT-TTGTAAACAAGT
* * * *
28625299 TTTGGTCTTTGCATTAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** *
28625364 TCCAAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTACTTTCTTAAAGTATT-AGAGACA
66 TCC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACA
* * * * * * ** *
28625428 ATCCATTTCTTCGATCAATTTTTTGAATATTCCTTGCTTGTTAAATCGCATCA-TTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* *
28625492 AGATTGTCATATTT-TAAAAAAGT
194 AGTTTGTCAT-TTTGTAAACAAGT
* * * * *
28625515 TTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACAAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC
* * * * * * *
28625579 GTCTGAAATTGTCAAACTTTTACAAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28625643 TCCATTCCTTTGAG-AAATTTTCATAACATTCCATGCTCGGGAAGTCACACCATTTGGTCT-AA-
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * *
28625705 A---TGACAATTTGAAAAC-AGCT
194 AGTTTGTCATTTTGTAAACAAG-T
* * *
28625725 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * **
28625790 TCCGATCTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATTTAGGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28625855 CCATTCCTTCCAGCTATTTTCCGAACATTCCATGCTCGAGAAATCATATCATTTGGTCCAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* * *
28625920 TTTGACAATTTGAAAAC-AGCT
196 TTTGTCATTTTGTAAACAAG-T
* * * *
28625941 TTTGGTCTTTGAATTAAAATCTTATTTACGTTACAATT-ATTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * ** *
28626005 TTTGATCTTATCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCCTTAAAGTATGCCGGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28626070 CCATTCCTTCTAGTAATTTTCCGAACATTCCATGCTCGAGAAATCATATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* * *
28626135 TTTTTCAATTTGTAATCAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * * * * * * *
28626156 TTT-GTGTATGAATTAAAATCATATTTACGCGAGAATTATTTCACTCTTGGTTCTTTGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * *
28626220 TTTGAACTAGTCAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACAA
66 TCCGAACTTGTC-AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * ** * *** * *
28626285 TACTTTCCCTCGAGCAATTTCCCGAACATTCCTTGCTC-AGGAAATTGTATCGTTT-GACGTAAA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATCATTTGGTC-TAAA
*
28626348 TAG-TTGTCATTTTGTAAACAATT
193 TAGTTTGTCATTTTGTAAACAAGT
* * *
28626371 TTTGTTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * **
28626436 TCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAATATTGAAGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * * * ** *
28626501 ACTTTCCTTCGAGCACTCTTCCAAACAATACTTGCTTG-GGAATCACATTGTTTGATCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
28626565 -TTGTCATTTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * *
28626585 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
*** * * * *
28626650 TCCGAACTTGTCAAACTTTTGTAAGTTGTTTTATAACTTCGGTTCATTAAAGTATTTAAGACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * ** * *
28626715 CCATTCCATCGATCAA-TTTCCGAA-ATACTCCATGGTTGTCAAAACGCATCATTTGGTCT--A-
131 CCATTCCTTCGAGCAATTTTTCGAACAT--TCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
28626775 A-------A-----T-----AGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * * * * *
28626781 TTTGGTCTTTGGATAACAAACTTATTTACGGGACAATTTTTTCTCTATTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * * * **
28626846 TCTGATCTTGTCCAGCTTTTACGATTTCTTTTATAACTTTGGTTCATTTAAGTGTTCACGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * *
28626911 TCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTTGGGAAATCACATCAGTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28626976 TTTGTCATTCTGTAAACAAGGT
196 TTTGTCATTTTGTAAACAA-GT
* * * *
28626998 TTT-GTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28627062 TCCAAACTTGTTAAACTTTTACGAGTTCTTTTATAACATTGGTTCCTTAAAGTATTAAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * *** *
28627127 CCATTCCTACCAGCAATTTTTCGAGTGTTCCATGCATTG-GAAATCACATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCACATCATTTGGTCTAAATA
* **
28627191 GTTTGTCATTTTGGAAACAACA
195 GTTTGTCATTTTGTAAACAAGT
* * * * * *
28627213 TTTGATCTTTGAATTAAAATCTTATTTACGTGTGAATTATTTCTCTTTTGGTTCTTGGACGAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * *
28627278 TCC-AATCTTGTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTAATCAAGACGA
66 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* *
28627342 TCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC-AGGAAATCACATCATTCGGTCTAAA-
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAAT
* *
28627405 AGGTTGTCATTTTGCAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * *
28627428 TTTGGTCGTTAAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTCCTT-GATC-AAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-CGAAC
** * * * *
28627491 TTCCGAACTTGTCAAACTTTTGTGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
** * * * *
28627556 TCCATTCCTTCGATAAATTTTT-GAAATATTCGATGCTCGTGAAATCACATCGTTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * *
28627620 AGCTTGACATTTT-TCAAAAAAGT
194 AGTTTGTCATTTTGT-AAACAAGT
* * *
28627643 TTTGGTCTTTGGATTAAGAACTTAACCAAAACTTATTTATGTGACAATTGTTTCTCACTTGGTTC
1 TTTGGTC--T---TT--GAA-TT-A--AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * * * *
28627708 TTTGACGAACTT-CTAATCTTGTCCACCTTTTACGAGTTCTTTTACAACTTTGGTTCATTAAAGT
55 TTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGT
* * * * * *
28627772 ATTCAAGACGATCCATTCCTTCCAGTAATTTTTCGTACATTCCATGCTTG-GAAAATCACATCAG
119 ATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAG-AAATCACATCAT
*
28627836 TTGGTTTAAATAGTTTGTCATTTTGTAAACAAGT
183 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * * * *
28627870 TTCGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCCCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28627935 TCTGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCATAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * * * *
28627999 TCCATTCCTTCGATCAATTTTTCGAACATTCCATGCTTGTGAAATCGCATCATTTAGTCAAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28628064 GTTTCG-CATTATT-TAAACTAGT
195 GTTT-GTCATT-TTGTAAACAAGT
* * * *
28628086 TTTGGTCTTTGCATTAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* **
28628151 TCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTACTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * * * ** * *
28628215 TCCATTTCTTCGATCAATTTTTTGAATATTCCTTGCTCGTTAAATCGCTTCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * *
28628280 GATTGTCATATTT-TAAAAAACT
195 GTTTGTCAT-TTTGTAAACAAGT
* * * * *
28628302 TTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACAAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC
* * * * * * *
28628366 GTCTGAAATTGTCAAACTTTTACAAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * *
28628430 TCCATTCCTTTGAG-AAATTTTCATAACATTCCATGCTCG-GAAATTCACACCATTTGGTCTTTG
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAA-TCACATCATTTGGTC--T-
* *** * * * **
28628493 AATTAAAATCTTATTTACGTGAGAATTA-T
190 AAATAGTTTGTCATTT-TGT-A-AACAAGT
* * ** ** ** * ** ** * **
28628522 TTCT-CTCTTGGTTCTTGGACGAACTT-TCGATCTTGTCAA-ACTTT-T-AC--GAGTTCTTTCA
1 TT-TGGTCTTTG-AATT--AAAAACTTATTTA-CGTGAGAATTGTTTCTCTCTTG-GTTCTTGGA
* ** ** * * * * * ** * *
28628580 -TAACTTTGGTTCCT-T-AAAGTATTCAGGATGATCCATTCCTTCCAGCTATT--TTCC-GAACA
60 CGAACTTCCGAACTTGTCAAACT-TTTACGA-G-TTC-TT--TTATAACT-TTGGTTCCTTAA-A
* * * * * * *** * * *
28628639 TTCCATGCTCGAGA-AAT-CATATCATTTG-G---TTTAAATAG-TTTTTCAAT--TTG-TAAA-
117 GT--AT--TCAAGACAATCCAT-TCCTTCGAGCAATTT--TTCGAACATTCCATGCTCGAGAAAT
* * * * * * * ** ** *
28628693 CA-AGT-TTTTCCGTATGAATAAATTCGTGAGAATTGT-TTC-ACT
175 CACA-TCATTT-GGTCTAAAT-AGTTTGTCA-TTTTGTAAACAAGT
* * * * ** ** * * * *
28628735 CTTGGTTTTTGACAAACTTCAGAAC-TAGTCAAATTTTACAAGTTCTTT-TATAACTTCGGTTCC
1 TTTGGTCTTTG---AA-TTAAAAACTTA-T-TTACGTGAGAA-TTGTTTCTCT--CTT-GGTT-C
* * * * ** * * *** *** * * **
28628798 TT-AAAGTATTTAAG-AC-TAT-ATACTTTCCCT-CGAGAAATTTCCCGAACATTCCTTGCTCGG
55 TTGGACGAACTTCCGAACTTGTCAAACTTT---TACGAGTTCTTT-TATAAC-TT--TGGTTCCT
* * * * *** * * * * ** * **
28628858 GAAATCGCATCGTTTGATGTA-AATAGTTGTCATTTTGTAAACAAGTTTT-GGGCTTTAAAT--T
113 TAAA--G--T--ATTCAAG-ACAATCCAT-TC-CTTCG--AGCAATTTTTCGAACATTCCATGCT
* * * * * * ** *
28628919 --A-AAA--AC-TTATTTACGT-GAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
167 CGAGAAATCACATCATTT-GGTCTA-AATAGTTTGTC-ATT--TTG-TAAAC-AAGT
** ** * * * * * *
28628969 TCCGAAC-TTG---T-CAAAC-T-TTTA-G-GAG--TTCTTT-TATAACTTCAGTTCCTT-AAAG
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT--CTT-GGTT-CTTGGACG
* ** * * ** *** ** ** * ** * *
28629021 TA-TT--GAAGATG--ATACTTTCCTTCGAGCACTCTTCCGAACAATACTTGCTT-GGGAAATCA
62 AACTTCCGAACTTGTCAAACTTT--TACGAGTTCT-TTTATAACTTTGGTTCCTTAAAGTATTCA
* * ** *** * * * * * *** * *
28629080 CA-TCATTTGATCTAAATAGTTGTC-ATTTTGT-AAACAAGTT--TTGGTCTTTAAATTAAAAAC
124 -AGACAATCCAT-TCCTTCG-AG-CAATTTT-TCGAAC-A-TTCCATGCTCGAGAAA-T-CACA-
* * * * * * * **
28629140 TTATTTATGT-GAGAATTGTTTCTC-TCTTGGT--TCTTG-
179 TCATTT-GGTCTA-AATAGTTTGTCAT-TTTGTAAACAAGT
** ** * ** * **
28629176 GATGAACTTCCGAACTTGTCAAAC-T-TTTACGT--G--TTCTTT-TAAAACTTCGGTTCATTAA
1 TTTGGTCTT-TGAA-TT-AAAAACTTATTTACGTGAGAATTGTTTCT--CTCTT-GGTTC-TT--
* * * * * * ** ** **
28629234 AGTATTCAAAACAATCC-ATTCCTTCGAT-AAA-TTTT-CGAAATATTCCATGCTCGTAAAATCA
57 -GGA--C-GAAC-TTCCGA--ACTT-G-TCAAACTTTTACG--A-GTT-C-T-TTTATAACTTTG
* * ** * * * * * * ** ** * ** * * *
28629295 GATCGTT-TGGT-CTAAATAGC-TTGTCATT-TTTTAAATAA-GTTTCGGTC-TT--TTGAT-TA
107 GTTCCTTAAAGTATTCAAGA-CAAT-CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA
* * * * ** * ** *
28629351 -AAA--AC-TTATTCAGGT-GACAATTGTTTCACACTTGGTTCTTGGACGAACT
170 GAAATCACATCATT-TGGTCTA-AATAGTTTGTCA-TT--TT-GTAAAC-AAGT
* * * * ** * * * * *** * **
28629400 TCTGATCTTGTCCAATTTTTACGAGTTCTTTTAC---A-ACTTTGGTTCAT-TAAAGTATTC-AA
1 TTTGGTCTT-T-GAA--TTAAAAACTT-ATTTACGTGAGA-ATTGTTTC-TCTCTTG-GTTCTTG
* * * * * * ****
28629459 GACGATCCATTCCTTCCAGCAATTTTTCGAAC-ATT-CCATGCTCGAGAAATCACATCGTTTGGT
58 GACGA---A---CTTCC-G-AACTTGTCAAACTTTTACGA-GTTC-TTTTAT-A-A-C-TTTGGT
* * * * ** ** ***
28629522 T--TAAATAGTTTGTCAATTTGTA-AA-CAAGTT--TTC-ATG-TATGAATTAAAATC-TTATTT
109 TCCTTAA-AGTAT-TCAA---G-ACAATCCA-TTCCTTCGA-GCAAT-TTTTCGAA-CATTCCAT
* * * ** * * * * * **
28629578 ACGCGAGAATTGTTGCTGTC-TTGGTTGTTTGACAA-A-CTT-CCGAACTTGTTAAAC---T
164 GCTCGAGAA--ATCAC-ATCATT--TGGTCT-A-AATAGTTTGTC-ATTTTG-TAAACAAGT
* ***** ** * * * *
28629633 TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA-TTCAGAATTATTTGTCTCTTGGTTCTT
1 TTT--G-G-TC-TTT-GAA--TTAAAAACTT-ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * *
28629697 GGATGAACTTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGCTTCCTTAAAGTATT
57 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
** * * *
28629762 -AGAGACAATCCATTCCTTCGATTAA-TTTTCTGAATATTCCATGCTCGTGAAATCGCATCATTT
122 CA-AGACAATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTT
*
28629825 GGTCTAAATAGATTGTCATATTT-TAAA-AAGT
185 GGTCTAAATAGTTTGTCAT-TTTGTAAACAAGT
* * * * * * * *
28629856 TTTGGTTTTTGGATTAAAAACTTACTTACGTGAGAATTATTTCTCTCATGATTCAAT-GAGGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAAC
* * * * * *
28629920 TTCCGAAATTGTCAAACTTTTAC-ATGTTCTTTTTTAAC-TTCGTTCCTTACAGTATTCAAAACG
65 TTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * * * *
28629983 ATCCATTCCTTTGAG-AAATTTTCTAAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAA
* * *
28630047 TAGTTTGACAATTTGAAAAC-AGCT
193 TAGTTTGTCATTTTGTAAACAAG-T
* * * * *
28630071 TTTGGTCTTTGAATTAAAATCTTATATACATTAGAATTATTTCTCTCTTGG-TCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
28630135 TTCGATCTTGTCAAACTTTTACGAGTTCTATCATAAC-TTGGTTCCTTATAGTATTCAGGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * *
28630199 CCATTCCTTCCAGCAA-TTTTCTGAACATTCCATGCTCGAGAAATCATATCATTT-GTTTAAATA
131 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* *
28630262 G-TTGTTCAATTTGTAATCAAGT
195 GTTTG-TCATTTTGTAAACAAGT
* * * * * * * * *
28630284 TTTTGTGTATGAATTAAAATCATATTTACGTGAGAATTGTTTCACTCTTCGTTCTTTGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28630349 TCCGAACTAGTCAAACTTTTACGAGTTCTTTTATATAACTTCGGCTCCTTAAAATATTCAAGACT
66 TCCGAACTTGTCAAACTTTTACGAGTTC-TTT-TATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * * ** * * * * * * *
28630414 ATACTTTCCCTCGAGCAATTTCCCAAACATTCCTTGCTCGGGAAATCGCATCGTTTGATGTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* *
28630479 TG-TTGTCATTTAGTAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28630501 TTTGAG-CTTTAAATTAGAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAAC
1 TTTG-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * ** * **
28630565 TTCCGAACTTGTCAAACTTCTAGGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTGAAGATGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * * * * *
28630630 TACTTTCCTTCGAGCACTCTTCCGAACA-TACTTGCTTG-GAAAATCACATCATTTGATCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAG-AAATCACATCATTTGGTCTAAAT
28630693 AG-TTG---TTTTGTAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * *
28630712 TTTGGTCTTTAAATTAATAGCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28630777 TCCGAACTTGTCAAACTTTTACGTGTTC-TTTAAAACTTTGGTTCATTAAAGTATTCAAAACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
** * * * * * *
28630841 CCATTCCTTCGATAAATTCTT-GAAATATTTCATGCTCGTGAAATCAGATCGTTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * *
28630905 GCTTGTCATTTTTTAAATAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * * *
28630927 TTCGATCTTTTG-ATTAAAAACTTATTCACGTGACAATTGTTTCTCACTTGGTTCTTGGACGAAC
1 TTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
28630991 TT-CTAATCTTGTCCAACTTTTACGAGTTCTTTTACAAC-TTGGTTCATTAAAGTATTCAAGACG
65 TTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * * *
28631054 ATCTATTCCTTCCAAG-AATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTTTAAA
129 ATCCATTCCTT-CGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAA
*
28631118 TAGTTTGTCAATTTGTAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
** * * ** ** * *
28631142 TTTTATGTATGAAGCAAACTCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTTGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
28631207 TCCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * *
28631272 CCATTCCTACCAGCAATTTTTCGAGCGTTCCTTGCACAAGAAATCGCATCGTTTGGTCTAAACAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
**
28631337 TTTGTCATTTTGTAAACAACA
196 TTTGTCATTTTGTAAACAAGT
* *
28631358 TTTGGTCTTTGAA-TAAAAATCTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTGGACGAAC
1 TTTGGTCTTTGAATTAAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
28631422 TTCC-AATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTTCCTTACAGTATTCAAGACG
65 TTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * * *
28631486 ATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCACTTCATTCGGTCTAAGT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28631551 AG-TTGTCATTTTGCAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28631573 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * ** * * **
28631638 TCCGACCTTGTCAAACTTTTGCAAGTTCATTTATATCTTCAGTTCATTAAAGTATTCAAAACGGT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28631703 CCATTCCGTCGATCAATTTTT-GAA-ATTTTCCATGCTCGTGAAATCGCATCATTTGGTCTAAAT
131 CCATTCCTTCGAGCAATTTTTCGAACA--TTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28631766 AGATTGTCATATTT-TAAA-AAGT
194 AGTTTGTCAT-TTTGTAAACAAGT
* * * * * *
28631788 TTTGGTCTTT-AGATTAAAAACTTAATTACGTGAGAATTATTTCTCTCATGATTCAAT-GAGGAA
1 TTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAA
* * * * *
28631851 CTTCCGAAATTGTCAAACTTTTAC-ATGTTCTTTTAAAAC-TTCGTTCCTTACAGTATTCAAAAC
64 CTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAC
* * * * *
28631914 GATCCATTCCTTTGAG-AAATTTTCTGAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAA
128 AATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAA
* *
28631978 ATAGTTTGACAATTTG-AAA-ATAGCT
192 ATAGTTTGTCATTTTGTAAACA-AG-T
* * * *
28632003 TTTGGTCTTTTAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
28632068 TCCGATCTTGTCAAACTTTTAGGAGTTCTATCATAACTTTGGTTCCTTATAGTATT-TAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28632132 CCATTCCTTCCAGTAA-TTTTCTGAACATTCCATGCTCGAGAAATCATATCATTT-GTTTAAATA
131 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * * *
28632195 GTTTTTTAATTTGTAATCAAGT
195 GTTTGTCATTTTGTAAACAAGT
** * * ** * * * * * *
28632217 TTTTATGTATGAATTAAATTCATATTTACGTGAGAATTATTTCACTCTTGGTTTTTTGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28632282 TCCGAACTAGTCAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACAA
66 TCCGAACTTGTC-AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * ** * * * * * *
28632347 TACTTTCCCTCCAGCAATTTCCCGAACATTCCTTGCTCGGGAAATCGCATCGTTTGATGTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28632412 G-TTGTCATTTTCTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * *
28632433 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * ** * * *
28632498 TCCAAACTTGTCAAACATTTAGGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTGAATACACT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * * *
28632563 ACTTTCCTTCGAGCACTCTTCCGAACAATACTTGC-CTGGGAAATCACATCATTTGATCTAACTA
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC-GAGAAATCACATCATTTGGTCTAAATA
*
28632627 G-TTGTCATTTTGCAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* *
28632648 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28632713 TCCGAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAAACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28632778 CCATTCCTTCGATG-AA-TTTTCGAAATATTCCATGCTCGTGAAATCAGATCGTTTGGTCTAAAT
131 CCATTCCTTCGA-GCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28632841 A-TCTTGTCATGTTT-TAAATAAGT
194 AGT-TTGTCAT-TTTGTAAACAAGT
* * * *
28632864 TTTGGTCTTTGGATTAAAAACTTATTTACGTGACAATTGTTTCTCACTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * * *
28632929 TCTGATCTTATCCAACTTTTAGGAGTTCCTTTACAACTTTGGTTCATTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28632994 CCATTCCTTCCAGCAATTTTTCGAACATTCCATGTTCGGGAAATGACATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28633059 TTTGTCAATTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
** * * * * *
28633080 TTTTATGTATGAATTAAAATCTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * ** * *
28633145 TCCGAACTTGTTAAACTTTTATGAGTTCATTTATATCTTCAGTTCATTAAAGTATTCAAGATAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * *
28633210 CCATTCCTACCAGCAATTTTTTGAGCGTTCCTTGCACGAGAAATCGCATCATTTGGTCTAAACAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* * **
28633275 TTTGTCAATTTGCAAACAACA
196 TTTGTCATTTTGTAAACAAGT
* * * *
28633296 TTTGGTCTTTGAATTAAAATCTTATTTATGTGTGAATTATTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
28633361 TCC-AATTTTTTCAAACTTTTACGTGTTCTTTTATAACTTCGTTTCCTTAAAGTATTCAAGACGA
66 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
*
28633425 TCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTC-AGGAAATCACATCATTCGGTCTAAA
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAA
*
28633488 TAG-TTGTCATTTTGCAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * *
28633511 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * ** * * ***
28633576 TCCGAACTTGTCAAACTTTTGCTAGTTCTTTTATATCTTCAGTTCATTAAAGTATTCAAAATGTT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * **
28633641 GCATTCCTTCAATCAATTTTT-GAAATATTCCTTGCTCGTGAAATTGCATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * *
28633705 GTTTGTCATTTTTTAAATAATT
195 GTTTGTCATTTTGTAAACAAGT
* * * * *
28633727 TTTTGTCATTGGATTAAAAACTTATTTACGTGACAATTGTTTCT-TACTT-G---TTGGATGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAC
** * * * * * * *
28633787 TTTTGATCTTGTCCAACTTTTACTAGTTCTTTTAGAACTTTGGTTCATTTAAGTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28633852 TCCATTCCTTCCAGTAATTTTTCAAACATTCCATGCTCAAGAAATCACATCAGTTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28633917 GTTTTTCATTTTGTAAACAAG-
195 GTTTGTCATTTTGTAAACAAGT
* ** *
28633938 TTTGGTGTTTGAATTAAATTCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * * ** ** * * *
28634003 TCCGAACTTGTTAAACTATCA-TAG-AC---AAT-CCATTCCTTCGATCAA-TTTTC-CGAACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG-ACAA
* * * * * * * ** * * *
28634060 TCCA-TGCTT-GTG-AA-ATTGCGCATCATT-TA-G-TC--TAAAT-AGTTTCGAATT-ATTTAA
130 TCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCA-CATC-ATTTGGTCTAA
*
28634114 ACTAGTTTTGTTC-TTTGGAGTAAA-AA--
192 A-TAG-TTTG-TCATTT--TGTAAACAAGT
** * ** * * * * ** *
28634140 ---CATATTT-ACGTGAGAA-TTATTT-C-T-----CTCTTGGT-TCTTGGATAAACTT---CTG
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-T--TCTTGGAC-G
* * * ** * * ** * *
28634189 AACTTGTCAAACTTTTACGATTTCTTTTATGA---C--TT-T-GC-TTCCTT-ATA---GTATT-
62 AACTT-CCGAACTTGT-C-A-AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * * *
28634241 AGAGACAATCCATTCCTTCTATCAATTTTCCAAATATTCCATGCTCGTGAAATCACATCATTTGG
123 A-AGACAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGG
* *
28634306 TCTAAATAGATTGTCATATTT-TAAA-AAGC
187 TCTAAATAGTTTGTCAT-TTTGTAAACAAGT
* * * * *
28634335 TTT-GCCTTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGATTCTAT-GAGGAA
1 TTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAA
** * * * * *
28634398 CTTCAAAAATTGTCAAACTTTTACAAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAAACG
64 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* ** * * *
28634462 ATCCATTCCTTTGAAAAATTTTCCGAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * *
28634527 AGTTTGACAATTTGAAAAC-AGCT
194 AGTTTGTCATTTTGTAAACAAG-T
* * * *
28634550 TTTGGTCTTTGAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGACGAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
28634615 T-CAAATCTTGTCAAACTTTTACAAGTTCTTTCATAATTTTGGTTCCTTAAAGTATTCAGGACGA
66 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * *
28634679 TCCATTCCTTCTAGCAA-TTTTCTAAACATTCCATGCTCGAGAAATCATATCATTTGGTTTAAAT
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * *
28634743 AGTTTTTCAATTTGTAATCAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * * * * *
28634766 TTTTGTGTATGAATTAAAATCATATTTACGTGAGAATTGTTTCACTCTTGGTTCTTTGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28634831 TTCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACTAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * * *
28634896 ACTTTCCCTCGAGCAA-TTTCCTAAACATTCCTTGCTCGGGAAATCGCATCGTTTGATGTAAATA
131 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
28634960 G-TTGTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
** * *
28634981 TTTGGGATTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
28635046 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTGAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * * *
28635111 ACATTCCTTCGAGCACTCTTGCGAACACTACTTGCTTGGGAAATCGCATCATTTGATCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28635176 -TTATCATTTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * *
28635196 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * ** *
28635261 TCCAAACTTGTCAAACTTTTGCAAGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * ** * *
28635326 CCATTCCTTTGATCAA-TTTTCGAAACATTCCACACTCGTGAGAA-CGCATCATTTGGTCTAAAT
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGA-AATCACATCATTTGGTCTAAAT
* *
28635389 AGTTTTGGTC-TTTGGATTAAA-AACT
194 AG-TTT-GTCATTTTG--TAAACAAGT
* * * * **** * * * ****
28635414 TAT-ATAC-GTGACAATATTTTCTCTATTTGTTCTTGGACGAACTT-TTGATCTTGTCAAACTT-
1 TTTGGT-CTTTGA-ATTAAAAACT-TA-TT-TACGT-GA-GAA-TTGTT--TC-TCTCTTGGTTC
** *** ** * * * * ***
28635475 TTAGGA-GTTCTTTTATAAC-T-TCGATTCATTT--GAG-T-ATTCA-AGACGATCCATTCCTTG
55 TT-GGACGAAC-TTCCGAACTTGTC-AAACTTTTACGAGTTCTTTTATA-AC-TTTGGTTCCTT-
* * * * * ** * * * *
28635532 CAGCAATTTTTCGA-ACATTCCATGCCTGGGAAATCACATAAGTTGGCTT-AAATAGTTTGTCAT
114 -A--AAGTATTCAAGACAATCCATTCCTTCG--AGCA-AT---TT---TTCGAACA--TT-CCAT
* * * * *** * * **
28635595 TCT-G-TAAA-CA-AGT--TTTGGTGTTTGAATTAAAATCTTATTTACATG-AGAA-TTGT
164 GCTCGAGAAATCACA-TCATTT-G-GTCT-AAATAGTTTGTCATTT---TGTA-AACAAGT
* * ** ** **** * * * *
28635648 TTCT-CTCTTGGTTGTTGGACGAACTTCCAAACTTGTGAAACATGTGTTATTTTATAACTTTAGT
1 TT-TGGTCTTTG-AATT--AAAAACTTATTTAC--GTGAGA-AT-TG-T-TTCTCT--C-TTGGT
* * * ** * * * ** *** * * ** *
28635712 TCCTT-AAAGTA-TT-C-AAGATGATC-CA-TTCCTACTAGCAACTTTCCGAGCATTCCTTGCAT
53 T-CTTGGACGAACTTCCGAACTTG-TCAAACTT-TTACGAG-TTCTTTTATAACTTTGGTT-CCT
* ** * * * * ** * * *** *
28635771 GGGAAATCGCATCATT-TTGTCTAA-ACAGT--TT-G-TC-ATTTTGTAAAAAAATATTTGGTCT
113 --TAAA--G--T-ATTCAAGAC-AATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTC-
** * * * * * * * * * ** *
28635829 TTGAATTAAAATCTTATTTACGTGTGAATTA-TTTCTCTCTTGGTTCTTGGACGAACT
168 GAGAAATCACATC--ATTT-GGTCT-AAATAGTTTGTC-ATT--TT-GTAAAC-AAGT
** * * * ** * * * * ** **
28635886 TCCGATCTTGTCAAACTTTTACGAGTTCTTT-CAT-A-ACTTCGTTTC-CT-TACAGTAT-TCAA
1 TTTGGTCTT-T-GAA--TTAAAAACTTATTTACGTGAGAATT-GTTTCTCTCT-TGGT-TCT-TG
* * * * * * * *
28635945 GACGATCCATTCCTTCGATCAATGTTCCGAACATTT-C-ATGCTCGTGAAATCGTATCA-TTTGG
58 GACGA-AC-TT-C--CGAAC-TTG-T-CAAACTTTTACGA-GTTC-T----T-TTATAACTTTGG
* * * * * * * * ** **
28636007 -TGC-AAATAGT-TTCACATTATTTAAACTAGT-ATT-G-GTC--TTTGGATTAAAAACATATTT
108 TTCCTTAA-AGTATTCA-A-GA--CAATCCATTCCTTCGAG-CAATTT---TT-CGAACAT-TCC
* ** ** ** * * **
28636064 ACG-T-GAGAATTATTTC-TC-TCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAAC---T
162 ATGCTCGAGAA--ATCACATCAT-TTGG-TC-TAAAT-AGTTTGTCATTTTGT-AAACAAGT
* * * * *** *
28636119 TTTACGAGT-TCTT---TT-ATAACTT-TGCTTCCTTAGAGTATTAGAGACAATCCATTCCTTCG
1 TTT--G-GTCT-TTGAATTAAAAACTTAT--TTACGT-GAGAATT-GTTTC--T-C--T-CTTGG
* **** * * * * *** * * * **
28636178 ATCAATTTTTTGAATATTCC-ATGCTTATGAAA-TAGCATC-ATTTGGTTTAAATAGA-TTGTCA
52 TTC--TTGGACGAA-CTTCCGA-ACTTGTCAAACTTTTA-CGAGTT-CTTT-TATA-ACTT-TGG
* * * * ** ** *
28636239 TAT-TTTAAAAAAGTTTTGGCCTTTAGATTAA-AAACTTATTTACGTGAG-AATTATTTC--TCT
108 T-TCCTT---AAAGTATT---C--AAGA-CAATCCA-TTCCTT-C--GAGCAATT-TTTCGAAC-
* * * * * * * * *
28636299 ATT-GATTCTGTGACGAACT-TC-TGAAATT-GTC-AAACT--TTT-ACAAGTTCTTTTATAAC-
157 ATTCCATGCT-CGA-GAAATCACAT-CATTTGGTCTAAA-TAGTTTGTC-A-TT-TTGTA-AACA
28636355 ---
214 AGT
* * * * * * * * **** ** *
28636355 TTCGTTCCTTAAAGTATTCAAAA-TGATCCATTCCTTTGAGAAATT-TTTAGAACATTCCATGCT
1 TTTGGT-CTT--TGAATTAAAAACTTAT---TTAC-GTGAG-AATTGTTTCTCTC-TT-GGTTCT
* * * ** *
28636418 CGG--GAA-GTCAC-ACATCATTTGGTCTAAA-TAGTTTGAC-A-AT-TTGGAAACAGCTTTTGG
56 TGGACGAACTTC-CGA-A-C--TT-GTC-AAACT--TTT-ACGAGTTCTTTTATA-A-C-TTTGG
* * * * * *** ** * *
28636475 -T-CTT--TGAATT--A-A-AATCTTATTTACGT-GAG-AATTATTTCTCTC-TT-GGTTCTTGG
108 TTCCTTAAAGTATTCAAGACAATC-CA-TTCCTTCGAGCAATT-TTTCGAACATTCCATGC-TCG
* * * *
28636528 ACGAAATTC-CA--ATCTT-GTC-AAACT--TTT-ACGAGTTCTT-T-CATAA-C
169 A-GAAA-TCACATCAT-TTGGTCTAAA-TAGTTTGTC-A-TT-TTGTAAACAAGT
* * ** * * * * ** ** *
28636572 TTTGGTTCTTTAAAGTATTCAGGAC-GATCCATTCCTTCCAGCAATT-TTT-TGAACATTCCATG
1 TTTGG-TCTTT---GAATTAAAAACTTAT---TTACGT-GAG-AATTGTTTCT-CTC-TT-GGTT
* * ** * * * * * ** * * *
28636634 C-TCGA-GAA-ATCATATCATTTGGTTTAAATAGTTTTTC-AATT-TGTAAACAAGTTT--TT-G
54 CTTGGACGAACTTCCGA--ACTT-G--TCAA-ACTTTTACGAGTTCT-TTTATAACTTTGGTTCC
* * * * * * *** * * *
28636691 TGT-ATGAATT-AAAATC-ATAC-TTACGT-GAG-AATTGTTTC--AC-TCTTGGTTCTTTGACA
112 T-TAAAGTATTCAAGA-CAATCCATTCCTTCGAGCAATT-TTTCGAACAT-TCCATGC-TCGAGA
* ** ** * * * * *
28636747 AACTTCTGAACTAGTCAAACTTT--TACGAGTTCTTTTATAACTTTGGGAAATC--GC
172 AA--TC---AC-A-TC--A-TTTGGT-CTAAATAGTTTGTCA-TTTTGTAAA-CAAGT
* ** * ** * **
28636801 ATT-G--TTTG-ATGTAAATAGTTGTCATTT-TGT-A-AACAAGTTT-TGGTCTT--TAAATT--
1 TTTGGTCTTTGAAT-TAAA-AACT-T-ATTTACGTGAGAA-TTGTTTCT-CTCTTGGT-TCTTGG
** **** * ** ** * * ** * ** *
28636854 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTG-GTTGTTGGATGAACTTTCGAACTTGTCAA
59 ACGAACTTCCGAACTTGTCAA--ACTT-T-TAC-GAGTTCTTTTAT-AACTTTGGTTCCT-T-AA
* * * * ** ** * * *
28636918 ACTTTTGCAAGTTC-TTTTATAACTTCG-GTTC-ATTAAAGTATTCAAGACAATCCATTCCTTCG
116 AGTATT-CAAG-ACAATCCATTCCTTCGAG--CAATT----T-TTCGA-ACATTCCA-TGC-TCG
* * * * ** * *
28636980 ATCAATTTTCGAAAT-ATTCCATGCTCGTGAAA-ACG--CATCATTTGGTCTAAA-TAGT
169 A-GAA--ATC-ACATCATT---TGGTC-T-AAATA-GTTTGTCATTT--TGTAAACAAGT
* * * * * *
28637035 TTTGGTGTTTGGATTAAAAACGTATTTACGTGACAATTTTTTCTCTATTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *** * *
28637100 TCTGATCTTGTCCAACTTTTACGAGTTATTTTATAACTTCATTTCATTTAAGTATTCAAGATC-A
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA-CAA
* * * *
28637164 TCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTTGGGAAATCACATCAGTTT-GTTTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCA-TTTGGTCTAAAT
*
28637228 AGTTTGTCATTCTGTAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28637251 TTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * *
28637316 TCCAAACTTGTTAAGCTTTTACGAGTTCTTTAATATCATTGGTTCCTTAAAATATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * **
28637381 CCATTCCTACCAGCAATTTTCCGAGCGTTCCATGCATTG-GAAATTGCATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCACATCATTTGGTCTAAATA
**
28637445 GTTTGTCATTTTGTAAACAACA
195 GTTTGTCATTTTGTAAACAAGT
* * * * ** * * *
28637467 TTTGATCTTTGAATTAAAATCTCATTTACGTGTGAATTACTTCTTTTTTGGTTCTTGGACGAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
28637532 TCCGATCTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTGCTTACAGTAATCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28637597 CCATTCCCTCGAGCAATTTTTCGAACATTCCGTGCTCGAGAAATCATATCATTCGGTCTAAAT-G
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* *
28637661 GTTGTCATTTTGCAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * *
28637682 TTTGGTCGTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * *
28637747 TCTGAACTTGTCAAACTTTTACTTGTTCTTTTAAAACTTCGGTTCATTAAAGTATTCAAAACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
** * * * *
28637812 CCATTCCTTCGATAAATTTTT-GAAATATTCCATGCTCGTGAAATCAGATCGTTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
** * *
28637876 ACTTGTCATTTTTTAAATAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * * *
28637898 TTCGGACTTTTG-ATTAAAAACTTATTCACGTGACAATTGTTTCTCACTTGGTTCTTGGACGAAC
1 TTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
28637962 TTCTGATCTTGTCCAACTTTTACGAGTTATTTTACAACTTTGGTTCATTAAAGTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * *
28638027 TCCATTCCTTCCAGCAA-TTTTCG-ATATTCCATGCTCGAGAAATCACATCATTTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* *
28638090 GTTTGTCAATTTGTAAACTAGT
195 GTTTGTCATTTTGTAAACAAGT
** * * * * * * *
28638112 TTTTATGTATGAATTAAAATCTTATTCACGTGAGAATTGTTTCTCTCTTGGTTGTTTGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28638177 TTCGAACTAGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * *
28638242 CCATTCCTACCAGCAATTTTTTGAGCGTTCCTTGCACTAGAAATCACATCGTTTGGTCTAAACAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* **
28638307 TTTGTCATTTTGTAAGCAACA
196 TTTGTCATTTTGTAAACAAGT
* *
28638328 TTTGGTCTTTGAA-TAAAAATCTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTGGACGAAC
1 TTTGGTCTTTGAATTAAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
28638392 TTCC-AATCTTGTCAAACTTTTACGAGCTCTTTTATAACTTCGTTTCCTTACAGTATTCAAGACG
65 TTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * *
28638456 ATCCATTCCCTCGAGCAATTTTTTGAACATTCCATGCTC-AGGAAATCACATCATTCGGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAA
* *
28638520 T-GGTTGTCATTTTGCAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * * *
28638543 TTTGGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTAGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * **
28638608 TTCGAACTTGTCAAACTTTTGCGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAAATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28638673 CCATTCCTTTGATCAA-TTTTCGAAATATTCCATGCTC-ATGAAATCATATCATTTGGTCCAAAT
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAAT
* * *
28638736 AGCTTGTCATTTT-TCAAAAAAAT
194 AGTTTGTCATTTTGT-AAACAAGT
* * * *
28638759 TTTGGTCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCACTTGGTTCTTAGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
28638824 TCTGATCTTGTTC-AACTTTTACGAGTTTTTTTACAACTTTGGTTCATTTAAGTATTCAAGACGA
66 TCCGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28638888 TCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATTAGTTGGTTTAAACA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28638953 GTTTGCCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28638975 TTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCT-TCTTGGTTGTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28639039 TCCAAACTTGTTAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* *
28639103 TCCATTCCTTCGATCAATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28639168 GTTTCG-CATTATT-TAAACTAGT
195 GTTT-GTCATT-TTGTAAACAAGT
* * * *
28639190 TTTGGTCTTTGGATTAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
28639255 TTCGAACTTGTCAAAC-TTTACGATTTCTTTTATAACTTCGTTTCCTTACAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28639319 CCATTCCTTCGACCAATTTTTCGAACATTCCAAGCTCGGGAAATCACGTCATTCGGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28639384 -TTGTCATTTTGCAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * *
28639404 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * ** * * * **
28639469 TCCGAACTTGTCAAACTTTTGCAAGTTCATTTATATCTTCAGTTCATTAAAGTATACAAAACGGT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * **
28639534 CCATTCCTTCGATCAA-TTTTCGAATATTCCATACTCGTGAAATTGCATCATTTGGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* * *
28639598 TTTGTCATTTTCTAAATAATT
196 TTTGTCATTTTGTAAACAAGT
* * * * * *
28639619 TTTTGTCATTGGATTAAAAACTTATTTACGTGATAATTGTTTCT-TACCTGGTTCTTGGGCGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAC
** * * * * *
28639683 TTTTGATCTTGTCCAACTTTTACGAGTTCTTTTATAACTTTGGTTCATTTAAGTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * *
28639748 TCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCAGTTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
28639813 GTTTGTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * * *
28639835 TTTTGTGTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
28639900 TCCAAACTTGTTAAATTTTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * * * *
28639964 CCCATTCCTTCGATCAA-TTTTCAGAGCATTCCATGCTCGTGAAATCGCATCATTTAGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28640028 AGTTTCG-CATTATT-TAAACTAGT
194 AGTTT-GTCATT-TTGTAAACAAGT
* * * * * *
28640051 TTTGGTCTTAGGATTAAAAACATATTTACGTGAGAATTATATCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28640116 TCCGAACTTGTCAAACTTTTACGATTTCTTTGATAACTTTGCTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * * *
28640180 TCCATTTCTTCGATCAATTTTTCGAAAATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* *
28640245 GATTGTCATATTT-TAAA-ATGT
195 GTTTGTCAT-TTTGTAAACAAGT
* * * * * *
28640266 TTTGGTCTTTGGATTAAAAACTTAATTACGTGAGAAGTATTTCTCTCTTGATTCTAT-GAGGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC
* * * * * * *
28640330 TTCAGAAATTGTCAAACTTTTACAAGTTCTCTTATAAC-TTCGTTCCTTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28640394 TCCATTACTTTGAG-AAATTTTCATAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* *
28640458 AGTTTGACAATTTG-AAAC-AGCT
194 AGTTTGTCATTTTGTAAACAAG-T
* * *
28640480 TTTGGTCTTTGAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28640545 TCC-AATCTTGTCAAACTTTTACGAGCTCTTTTATAACTTCGTTTCCTTACAGTATTCAAGACGA
66 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * *
28640609 TCCATTCCCTCGAGCAATTTTTCGAACATTCTATGCTC-AGGAAATCACATCATTCGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAAT
* *
28640673 -GGTTGTCATTTTGCAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * *
28640695 TTTGGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTATTAGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * **
28640760 TCCGAACTTGTCAAACTTTTGCGAGTTCTTTTATAACTAAGGTTCATTAAAGTATTCAAAATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* ** * *
28640825 CCATTCCTTTGATTAA-TTTTCGAAATATTCCATGCTC-ATGAAATCATATCATTTGGTCTAAAT
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAAT
* * *
28640888 AGCTTGTCATTTT-TCAAAAAAAT
194 AGTTTGTCATTTTGT-AAACAAGT
* * * *
28640911 TTTGGTCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCACTTGGTTCTTAGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * *
28640976 TCTGATCTTGTTC-AACTATTACGAGTTTTTTTACAACTTTGGTTCATTTAAGTATTCAAGACGA
66 TCCGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28641040 TCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATTAGTTGGTTTAAACA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28641105 GTTTGCCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28641127 TTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28641192 TCCAAACTTGTTAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* *
28641256 TCCATTCCTTCGATCAATTTTTCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28641321 GTTTCG-CATTATT-TAAACTAGT
195 GTTT-GTCATT-TTGTAAACAAGT
* * *
28641343 TTTGGTCTTTGGATTAAAAA-TATATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAAC
1 TTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
28641407 TTTCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCGTTTCCTTACAGTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28641472 TCCATTCCTTCGACCAATTTTTCGAACATTCCAAGCTTGGGAAATCACGTCATTCGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28641537 G-TTGTCATTTTGCAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * *
28641558 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * ** * * * **
28641623 TCCGAACTTGTCAAACTTTTGCAAGTTCATTTATATCTTCAGTTCATTAAAGTATACAAAACGGT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * **
28641688 CCATTCCTTTGATCAA-TTTTCGAAATATTCCATACTCGTGAAATTGCATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * *
28641752 GTTTGTCATTTTCTAAATAATT
195 GTTTGTCATTTTGTAAACAAGT
* * * * * *
28641774 TTTTGTCATTGGATTAAAAACTTATTTACGTGATAATTGTTTCT-TACCTGGTTCTTGGGCGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAC
** * * * * *
28641838 TTTTGATCTTGTCCAACTTTTACGAGTTCTTTTATAACTTTGGTTCATTTAAGTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * *
28641903 TCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCAGTTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
28641968 GTTTGTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * * *
28641990 TTTTGTGTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
28642055 TCCAAACTTGTTAAATTTTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * * *
28642119 TCCATTCCTTCGATCAA-TTTTCAGAGCATTCCATGCTCGTGAAATCGCATCATTTAGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28642183 AGTTTCG-CATTATT-TAAACTAGT
194 AGTTT-GTCATT-TTGTAAACAAGT
* * * * * *
28642206 TTTGGTCTTAGGATTAAAAACATATTTACGTGAGAATTATATCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28642271 TCCGAACTTGTCAAACTTTTACGATTTCTTTGATAACTTTGCTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * *
28642335 TCCATTTCTTCGATCAATTTTTCGAAAATTCCATGCTC-ATGAAATCGCATCATTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAAT
*
28642399 AGATTGTCATATTT-TAAA-AAGT
194 AGTTTGTCAT-TTTGTAAACAAGT
* * * * * *
28642421 TTTGGTCTTTGGATTAAAAACTTAATTACGTGAGAAGTATTTCTCTCTTGATTCTAT-GAGGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC
* * * * * *
28642485 TTCAGAAATTGTCAAACTTTTTACAAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAAACG
65 TTCCGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * * * * *
28642549 ATCCATTACTTTGAG-AAATTTTCATAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAA
* * *
28642613 TAGTTTGACAATTTGAAAAC-AGCT
193 TAGTTTGTCATTTTGTAAACAAG-T
* * *
28642637 TTTGGTCTTTGAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28642702 TCC-AATCTTGTCAAACTTTTACGAGCTCTTTTATAA-TTTCGTTTCCTTACAGTATTCAAGACG
66 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACA
** * * *
28642765 ATCCATTCCTTTAAGCAATTTTTCGAACATTCCA-GCTCGGGAAATCACGTCATTCGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* *
28642829 -GGTTGTCATTTTGCAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * *
28642851 TTTGGTCGTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * **
28642916 TCCGAACTTGTCAAACTTTTGTGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAAATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * *
28642981 CCATTCCTTCGA-TAAATTTTCGAAATATTCCATGGTCGTGAAATCACATCGTTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * *
28643045 GCTTGTCATTTTTTAAATAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * * * *
28643067 TTTGGTCTTTGGATTAAAAACTTATTTACGTGACAATTGTTTCGCACTTGGTTCTTCGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28643132 T-CTAATCTTGTCCAACTTTTACGAGTTCTTTTACAACTTTGGTTCATTAAAGTATTCAAGACGA
66 TCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * *
28643196 TCCATTCCTTCCAGCAATTTTTCGTACATTCCATGCTCGGGAAATCACATCAGTTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
28643261 GTTTGTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28643283 TTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-C
* * * *
28643348 TTCC-AACTTGTTAAACTTTTACGAGTTCTTTTATAACTTCGATTCCATAAAGTATT-AGAGACA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACA
* *
28643411 ATCCATTCCTTCGATCAATTTTCCGAACATTCCATGCTC-ATGAAATCACATCATTTGGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAA
* *
28643475 TAGTTACG-CATTATT-TAAACTAGT
193 TAGTT-TGTCATT-TTGTAAACAAGT
* * * * * * * *
28643499 GTTGGTCTTTGGATTAAAAACATATTTTCATCAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28643564 TCCGAACTTGTCAAACTTTTACGATTTCTTTAATAACTTTGCTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * *
28643628 TCCATTCCTTCGATG-AA-TTTTCTGAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAA
130 TCCATTCCTTCGA-GCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAA
28643691 TAGTTTGTCATATTT-TAAA-AAGT
193 TAGTTTGTCAT-TTTGTAAACAAGT
* * * * *
28643714 TTTGGTCTTT-AGATTAAAAACTTACTTACGTGAGAATTATTTCTCTCATGATTCTAT-GAGGAA
1 TTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAA
* * * * * * *
28643777 CTTCTGAAATTATCAAACTTTTAC-ATGTTCTTTTATAAC-TTCGTTCCTTACAGTATTCAAAAT
64 CTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAC
* * * * * *
28643840 GATCCATTCCTTTGAG-AAATTTTCTAAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAA
128 AATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAA
* * *
28643904 ATAGTTTGACAATTTGAAAAC-AGCT
192 ATAGTTTGTCATTTTGTAAACAAG-T
* * *
28643929 TTTGGTCTTTGAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
28643994 TCCGATCTTGTCAAACTTTTACGAGTTCTATCATAACTTTGGTTCCTTATAGTATTCAGGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28644059 CCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGAGAAATCATATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* * *
28644124 TTTTTCAATTTGTAATCAAGTT
196 TTTGTCATTTTGTAAACAAG-T
* * * * * * * *
28644146 TTTTGTGTATGAATTAAAATCATATTTACGTGAGAATTGTTTCACTCTTGGTTCTTTGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28644211 TCCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACTAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * ** * * * * *
28644276 ACTTTCCCTCGAGCAA-TTTCCTGAACATTCCTTAATCGGGAAATCGCATCGTTTGATGTAAATA
131 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
28644340 G-TTGTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * *
28644361 TTTGGGCTTTAAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * ** * **
28644425 TTCGAACTTGTCAAACTTCTAGGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTGAAGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * *
28644490 ACTTTCCTTCGAGCACTATTCCGAACA-TACTTGCTTGGGAAATCACATCATTTGATCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
28644554 -TTGTCATTTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * *
28644574 TTTGGTCTTTAAAATAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
28644639 TCCGAACTTATCAAACTTTTATGTGTTCTTTTAAAACTTCGGTTCATTAAAGTATTCAAAACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * *
28644704 CCATTACTTCGA-TAAATTCTCGAAATATTCCATGCTCGTGAAATCAGATCGTTTGGTCAAAATA
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* *
28644768 GCTTGTCATGTTT-TAAATAAGT
195 GTTTGTCAT-TTTGTAAACAAGT
* * * * *
28644790 TTCGATCTTTTG-ATTAAAAACTTATTCACGTGACAATTGTTTCTCACTTGGTTCTTGGACGAAC
1 TTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
28644854 TTCTGATCTTGTCCAACTTTTACGAGTTCTTTTACAACTTTGGTTCATTAAAGTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * *
28644919 TCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28644984 GTTTGTCAATTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
** * * * * * *
28645006 TTTTATGTATGAATTAAAATCTTATTTATGTGAGAATTGTTTCTCTCTTGGTTGTTTGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28645071 TCTGAACTTGTTAAACTTTTAGGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * *
28645136 CCATTCCTACCAGCAATTTTTCGAGCGTTCCTTGCACTAGAAATCGCATCGTTTGGTCTAAACAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
**
28645201 TTTGTCATTTTGTAAGA-AAAA
196 TTTGTCATTTTGTAA-ACAAGT
* * *
28645222 TTTGGTCTTTGAA-TAAAATCTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * **
28645286 TCCTATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTTCCTTACACAGTATTCAAGATG
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA-A-AGTATTCAAGACA
* * * * * *
28645351 ATCCATTCCTTCGACCAATTTTTCGAACATTCCATCCTCGGGAAATTACGTCATTCGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28645416 AG-TTGTCATTTTGCAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28645438 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * ** * * **
28645503 TCCGAACTTGTCAAACTTTTTTCAAGTTCATTTATATCTTCAGTTCATTAAAGTATTCAAAACGG
66 TCCGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * *
28645568 TCCATTCCTTCGATCAA-TTTTCGAAATATTCCATACTCGTGAAATCGCATCATTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * **
28645632 AGTTTGTCATTTTCTAAATATTT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28645655 TTTTGTCATTGTATT--AAA---A---AC-----AATTGTTTCT-TACTTGGTTCTTGGACGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAC
** * * * * * *
28645706 TTTTGATCTTGTCCAACTTTTACTAGTTCTTTTATAACTTTGGTTCATTTAAGTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * *
28645771 TCCATTCCTTCCAGCTATTTTTCGAACATTCCATGCTCGGGAAATCACATCAGTTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28645836 GTTTTTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28645858 TTTGGTGTTTGAATTAAAATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28645923 TCCAAACTTGTTAAATTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * ** *
28645987 TCCATTCCTTTGATCAATTTTTCGAACATTCCATGCTCGTGAAATCGTATCATTTAGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28646052 GTTTCGT-ATTATT-TAAACTAGT
195 GTTT-GTCATT-TTGTAAACAAGT
* * * ** **
28646074 TTTGGTCTTTGGATTAAAAACATATTTACGTGAGAATTATTTGACTCTTGGTTCTTGGATAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28646139 TCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTTGCTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * *
28646203 TCCATTCCTTCGATG-AATTTTTCGAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAAT
130 TCCATTCCTTCGA-GCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28646267 AGATTGTCATATTT-TAAA-AAGT
194 AGTTTGTCAT-TTTGTAAACAAGT
* * * * *
28646289 TTTGGTCTTTGGATTAAAAAACTTACTTACGTGAGAATTATTTCTCTCTTGATTCTAT-GAGGAA
1 TTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAA
* ** * * * *
28646353 CTTCCGAAATTGTCAAACTTTTACTTGTTCTTTTATAAC-TTAGTTCCTTACAGTATTCAAAACG
64 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * * * *
28646417 ATCCATTCCTTTGAG-AAATTTTCTAAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAA
* * *
28646481 TAGTTTGACAATTTGAAAAC-AGCT
193 TAGTTTGTCATTTTGTAAACAAG-T
* * * *
28646505 TTTGGTCTTTGAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
28646570 TCCGATCTTGTCAAACTTTTACGAGTTCTATCATAACTTTGGTTCCTTATAGTATTTAGGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28646635 CCATTCTTTCCAGTAA-TTTTCTGAACATTCCATGCTCGAGAAATCATATCATTTGGTTTAAATA
131 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * *
28646699 GTTTTTCAATTTGTAATCAAGT
195 GTTTGTCATTTTGTAAACAAGT
** * * * ** * * *
28646721 TTTTATGTATGAATTAAAATCAAATTTACGTGAGAATTGTTTCACTCTTGGTTCTTTGACAAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28646786 TCCGAAATAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACTAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * ** * * ** ** * *
28646851 ACTTTCCCTCAAGCAATTTCCCGAACATTCCTTGCTCGGGAAATTGCATTGTTTGATGTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
28646916 -TTGTCATTTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * *
28646936 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGAACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * ** * **
28647001 TCTGAACTTGTCAAACTTTTAGGAGTTCTTTTATAAGTTCAGTTCCTTAAAGTATTGAAGACGCT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * * * * * *
28647066 ACTTTCCTTCGAGCACTCTTCCGAACAATACTTGCTTGGGAAATCACATCATTTGATCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28647131 -TTGTCATTTTGCAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * *
28647151 TTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * *
28647216 TCCGAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAAACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28647281 CCATTCCTTCGATG-AA-TTTTCGAAATATTCCATGCTCGTGAAATCAGATCGTTTGGTCTAAAT
131 CCATTCCTTCGA-GCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28647344 A-TCTTGTTATGTTT-TAAATC-AGT
194 AGT-TTGTCAT-TTTGTAAA-CAAGT
* * *
28647367 TTTGGTCTTTGGATTAAAAACTTATTTACGTGACAATTGTTTCTCACTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * * *
28647432 TTTGATCTTGTCCAACTTTTACGAGTTCCTTTACAACTTTGGTTCATTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* *
28647497 CCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28647562 TTTGTCAATTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
** * * *
28647583 TTTTAT-TTATGAATTAAAATCTTATTTATGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAAC
1 TTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
28647647 TGCCAAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * * * * *
28647712 TCCATTCCTACCAGCAATTTTTCGAGCGTTCCTTGCACGAGAAATCGCATCTTTTGGTCTAAACA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * * **
28647777 ATTTGTCAATTTGCAAACAACA
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28647799 TTTGGTCTTTGAATTAAAATCTTATTTACGTGTGAATTATGTCTCTTCTTGGTTCTTGGACGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAAC
* * * * * *
28647864 TTCCCAATCTTGTCAAACTTTTACGAGCTC-TTTATAACTTCGTTTCCTTACAGTATTCAAGACG
65 TTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * *
28647928 ATCCATTCCCTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACGTCATTCGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* *
28647993 -GGTTGTCATTTTGCAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28648015 TTTGGTCTTTAAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * **
28648080 TTCGAACTTGTCAAACTTTTGCGAGTTCTTTTATAACTTCGGTTCATTAAAATAATCAAAATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28648145 CCATTCCTTCAATCAATTTTT-GAAATATTCCATGCTCGTA-AAATTC-CATCATGTGGTCTAAA
131 CCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCG-AGAAA-TCACATCATTTGGTCTAAA
* * **
28648207 TAGCTTGTCATTTTTTAAGTAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * * * *
28648231 TTTGCTCTTTGGATTAAACACTTATTTATGTGACAATTGTTACT-TACTTGGTTCTTGGACGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAC
** * * * * * * *
28648295 TTTTGATCTTGTCCAACTTTTACGAGTTGTTTTATAACTTTGATTCATTAAAGTATTTAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * * * *
28648360 TTCGTTCCTTCCAGTAATTTTTCGAACTTTCCATGCTCGGGAAATCACATCAGTTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
28648425 GTTTGTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * * * *
28648447 TTTGGTGTTTGAATTAAAATCTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTGGACCAGCT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * *
28648512 TCCGATCTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGTTTTCTTAAAAGTATCCAATACGA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACAA
* * * *
28648577 TCCATTCCTTCGAGCAATTTTTTGAACACTCCATGCTC-AGGAAATCACATCATTCGGTCAAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAAT
* * *
28648641 A-ATTGTCATTTTGCAGACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28648663 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
28648728 TCCGAACTTGCCAAACTTTTGCGAGTTCTTTTATATCTTTGGTTCATTAAAGCATTCAAAACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28648793 CCATTCCTTCGATCAA-TTTTCAAAATATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* * *
28648857 GTTTGTCATTTTTTAAATATGT
195 GTTTGTCATTTTGTAAACAAGT
* * *
28648879 TTTGGTCTTTGGATTAAAAACTTATTTACGTGACAATTGTTTCT-TACTTGGTTCTTGGATGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAC
** * * * * * * *
28648943 TTTTGATCTTGTCCAGCTTTTACGACTTCTTTTATAACTTCT-GTTCATTTAAGTATTCAAGACG
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACA
* * * * * *
28649007 ATCCATTCCTTCCAGAAATTTTTCAAACATTCCTTGCTCGGGAAATCACATC-TGTTGGTTTAAA
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCAT-TTGGTCTAAA
28649071 TAGTTTGTCATTTTGTAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * * *
28649095 TTTGGTGTTTCAATTAAAATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
28649160 TCTGAACTTGTAAAACTTTTATGAGTAT-TTTTATAACATCGGTTCCTTAAAGTATT-AGAGACA
66 TCCGAACTTGTCAAACTTTTACGAGT-TCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACA
* * * * * * *
28649223 ATCCATCCCTTCGATCAATTTTCCGAACATTCAATGCTTGTGAAATCAAATCATTTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
28649288 AGTTTCG-CATTATT-TAAACTAGT
194 AGTTT-GTCATT-TTGTAAACAAGT
* * * *
28649311 TTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
*
28649376 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTACGAGTTCTTTTATAACTTTGTTTCC
66 TCCGAACTTGTC--A-----A--A---C---T-T---TTACGAGTTCTTTTATAACTTTGGTTCC
* * * *
28649441 TTAAAGTATT-AGAGACAATCCATTCCTTCTATCAATTTTTCGAATATTCCATCCTC-ATGAAAT
112 TTAAAGTATTCA-AGACAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAAT
* * *
28649504 CGCATCATTTGGTCTAAATAGATTGTCATATTT-TAAAAAAGT
175 CACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAAGT
* * * * * *
28649546 TTTGGTCTTTGGATTAAAAACTTATTTAGGTGATAATTATTTATCTCTTGATTCTAT-GACGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC
* * * * * * *
28649610 TTCTGAAATTGTCAAACTTTTACAAGTTATTTTATAAC-TTCGTTCCTTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28649674 TCTATTCCTTTGAGAAATTTTTCAAACATTCCATGCTCGGGAAATCACATTATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28649739 GTTTGTCAATTTGTAAAC-AGAT
195 GTTTGTCATTTTGTAAACAAG-T
* * * *
28649761 TTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * ** *
28649826 TCCTATCTTGTCAAATTTTTACGAATTCTTTCATAACTTCAGTTCCTTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * *
28649891 CCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGAGAAATCATATCATATGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* *
28649956 TTTGCCAATTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * * * * * *
28649977 TTTTGTGTGTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTTGACTAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * ** * **
28650042 TCCAAACTAGTCGAACTGTTACGAGTTCTTTTATAACTACGGTTCCATAAAGTATTCAAGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * *
28650107 ACTTTCCCTCGAGCAATTTTTCGAACATTCCTTGCTTGGGAAATCACATCATTTGATCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28650172 -TTGTCATTTTGCAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* *
28650192 TTTGGTCTTTAAATTAACAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * *
28650256 TTCGAACTTGTCAAACTTTTGCGAATTCTTTTCTAACTTTGTTTCATTAAAGTATTCAAAACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * ***
28650321 CCATTCCTTCGATCTA-TTTTCAAAATATTCCATGCTTGTGAAATCGTTTCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
* *
28650385 GTTTGTCATTTTATAAATAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * *
28650407 TTTGGTCTTTGGATTCAAAACTTATTTACGTGACAATTGTTTCTCACTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * *
28650472 TCTGATCTTGTCCAACTTTTACAAGTTCTTTTACAACTTCGGTTCTTTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * *
28650537 CCATTCCTTCCAGTAATTTTTCGAACATTTCATGCTCGGGAAATCATATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
*
28650602 TTTGTCAATTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * * * *
28650623 TTTTGTGTATGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
28650688 TACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * *
28650753 CCATTCCTGCAAACAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTCGGTCTAAACAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* *
28650818 TTTATCATTGTGTGAAA-AAGT
196 TTTGTCATTTTGT-AAACAAGT
* * * *
28650839 TTTGGTGC-CTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC
1 TTTGGT-CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * * * *
28650903 TTTTGATCTTGT-----TTTTACGAGTTCTTTTATAACTTCGGTTCATTAAATTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28650963 TCCATTCCTTTGATCAATTTTT-GAAATATTCCATGCTCGTGAATTCGCATCATTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* * * *
28651027 AGCTTGTCCTTTTTTAAATAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * *
28651050 TTTGGTCTTTCG-ATTGAAAACTTATTTACGTGAAAATTGTTTCT-TACTGGGTTCTTGGATGAA
1 TTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAA
** * * * * * * * *
28651113 CTTTTGATCTTCTCCAACTTTTACGAGTTCCTTTATAACTTCGGTTCATT-TA--ATTCAAGACG
64 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * * * *
28651175 ATCCATTCCTTTC-AGCAATTTTTCGAACATTCCATGGTCGGGAAATAACATCAGTTGGTTTAAA
129 ATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAA
*
28651239 TAGTTAGTCATTTTGTAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * *
28651263 TTTGGTGTTTGAATTAAAATCTTATTTACGTGAGAACTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28651328 TTCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * **
28651393 TCATTCCTACCAGCAA-TTTTCTAAGCATTCCATGCTCGGGAAATTGCATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28651457 GTTAGTCATTTTGTAAACAA-T
195 GTTTGTCATTTTGTAAACAAGT
* ** * * *
28651478 ATTTGGTCTTTGACTTAAAATTTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTAGACGAAC
1 -TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * **
28651543 TTCC-AATCTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGTTTCCTTAAA-TATTCAAGATG
65 TTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACA
* * *
28651606 ATCCATTCCTTCGAGCAATTTTTC-AAGCATTCCACGCTCGGGAAATCACATCATTCGGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAA
*
28651670 TAG-TTGTCATTTTGCAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
*
28651693 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * * *
28651758 TTTGAACATGTCAAACTTTTGCGAGTTCTTTTATATCTTCT-GTTCATTAAAGTATTCAAAACGA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACAA
* * * * * **
28651822 TCCATTCCTTCAATCAGTTTTT-GAAATATTCCATGCTCGTGAAATTGCATCATTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* **
28651886 AGTTTGTCATTTTTTAAATGAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
28651909 TTTGGTCTTTGGATTAAAAACTTATTTACGTGACAATTATTTC-CTACTTGGTTCTTGGACGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAC
** * * * * * * *
28651973 TTTTGATCTTGTCCAGCTTTTACGAGTTCTTTTATAACTTTTGTTCATTTAAGTATTCAAGACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28652038 TCCATTCCTTCCAGAAATTTTTCAAACATTCCTTGCTCGGGAAATCACATC-TGTTGGTTTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCAT-TTGGTCTAAAT
*
28652102 AGTTTGTCATTTTGTAGACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * *
28652125 TTTGGTGTTTCAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
28652190 TCTGAACTTGTAAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTTAAAGTATT-AGAGACAA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAA
* * * *
28652254 TCCATCCCTTCGATCAATTTTCCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
** *
28652319 GTTTCACATTATT-TAAACTAGT
195 GTTTGTCATT-TTGTAAACAAGT
* * * *
28652341 TTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
28652406 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTACGAGTTCTTTTATAACTTTGTTTCC
66 TCCGAACTTGTC--A-----A--A---C---T-T---TTACGAGTTCTTTTATAACTTTGGTTCC
* * * *
28652471 TTAAAGTATT-AGAGACAATCCATTCCTTCTATCAATTTTTCGAATATTCCATCCTC-ATGAAAT
112 TTAAAGTATTCA-AGACAATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGA-GAAAT
* * *
28652534 CGCATCATTTGGTCTAAATAGATTGTCATATTT-TAAAAAAGT
175 CACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAAGT
* * * * * *
28652576 TTTGGTCTTTGGATTAAAAACTTATTTAGGTGATAATTATTTATCTCTTGATTCTAT-GACGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC
* * * * * * * *
28652640 TTCTGAAATTGTCAAACTTTTACAAGTTATTTTATGAC-TTCGTTCCTTAAAGTATTCAAAACGA
65 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAA
* * * * * *
28652704 TCTATTCCTTTGAGAAATTTTTCAAAC-TTCCATGCTCGGGAAATCACATTATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
28652768 GTTTGTCAATTTGTAAAC-AGCT
195 GTTTGTCATTTTGTAAACAAG-T
* * * *
28652790 TTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
28652855 TCCTATCTTGTCAAATTTTTACGAATTCTTTCATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * *
28652920 CCATTCCTTCCAGCAATTTTTCAAACATTCCATGCTCGAGAAATCATATCATATGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* *
28652985 TTTGCCAATTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * * * *
28653006 TTTTGTGTGTGAATTAAAATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * ** * * * **
28653071 TCCGAGCTAGTCGAACTTTTACGAGTTTTTTTATAACTAAGGTTCCATAAAATATTCGAGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
* * * * * * ** *
28653136 ACTTTCCCTCGAGCAATTTTTCGAACATTCCTTGCTTGGGAAATTGCATCATTTGATCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
* * *
28653201 -TTGTTATTTTGCAAACAAGC
196 TTTGTCATTTTGTAAACAAGT
* *
28653221 TTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * **
28653285 TTTGAACTTGTCAAACTTTTGCGAGTTCTTTTATAA-TTTCTGTTCATTAAAGTATTCAAAATGA
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACAA
* *
28653349 TCCATTCTTTCGATCAATTTT
130 TCCATTCCTTCGAGCAATTTT
28653370 CGATCACTTG
Statistics
Matches: 27252, Mismatches: 5576, Indels: 3137
0.76 0.16 0.09
Matches are distributed among these distances:
189 18 0.00
190 16 0.00
191 7 0.00
192 14 0.00
193 14 0.00
194 7 0.00
195 8 0.00
196 302 0.01
197 33 0.00
198 13 0.00
199 11 0.00
200 18 0.00
201 9 0.00
202 9 0.00
203 133 0.00
204 61 0.00
205 19 0.00
206 16 0.00
207 20 0.00
208 105 0.00
209 45 0.00
210 250 0.01
211 532 0.02
212 226 0.01
213 801 0.03
214 3061 0.11
215 6276 0.23
216 11031 0.40
217 1211 0.04
218 184 0.01
219 149 0.01
220 161 0.01
221 53 0.00
222 84 0.00
223 67 0.00
224 46 0.00
225 86 0.00
226 161 0.01
227 310 0.01
228 61 0.00
229 82 0.00
230 168 0.01
231 72 0.00
232 59 0.00
233 69 0.00
234 80 0.00
235 432 0.02
236 81 0.00
237 108 0.00
238 78 0.00
239 93 0.00
240 68 0.00
241 52 0.00
242 47 0.00
243 12 0.00
244 10 0.00
245 12 0.00
246 8 0.00
247 10 0.00
248 5 0.00
249 11 0.00
250 11 0.00
251 16 0.00
252 16 0.00
253 7 0.00
254 9 0.00
255 8 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAAT
CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAAGT
Found at i:28621618 original size:196 final size:195
Alignment explanation
Indices: 28621225--28621621 Score: 463
Period size: 196 Copynumber: 2.0 Consensus size: 195
28621215 TTTGTAAACA
* * * *
28621225 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTATCTCTTGGTTCATGGATGA
1 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCATGGACGA
*
28621290 ACTTCCGAACTTGTCAAACTTTTACAAGTTGTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
66 ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
* * * * * *
28621355 AATCCATTCCATCGATCAATTTCCGAAATACTCCATGGTTGTCAAAACGCATCATTTGGTCTAAA
131 AATCCATTCCATCCAGCAATTTCCGAAATA-TCCATGCTTGGCAAAACACATCAGTTGGTCTAAA
28621420 T
195 T
** * * * *
28621421 AGTTTTGGTCTTTGGATTACAAACTTATTTACGGGACAATTTTTTCTCTATTGGTTCTTGGACGA
1 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCATGGACGA
* * * * * * * * * *
28621486 ACTTCTGATCTTGTCCAACTTTTACGATTTCTTTTATAACTTTGGTTCATTTAAGTGTTCACGAT
66 ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
* * * * * *
28621551 GATCCATTCCTTCCAGCAATTTGTCGAACAT-TCCATGCTTGGGAAATCACATCAGTTGGTTTAA
131 AATCCATTCCATCCAGCAATTT-CCGAA-ATATCCATGCTTGGCAAAACACATCAGTTGGTCTAA
28621615 AT
194 AT
28621617 AGTTT
1 AGTTT
28621622 GTCATTCTGT
Statistics
Matches: 166, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
196 160 0.96
197 4 0.02
198 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (195 bp):
AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCATGGACGA
ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
AATCCATTCCATCCAGCAATTTCCGAAATATCCATGCTTGGCAAAACACATCAGTTGGTCTAAAT
Found at i:28624129 original size:196 final size:197
Alignment explanation
Indices: 28623795--28624148 Score: 505
Period size: 196 Copynumber: 1.8 Consensus size: 197
28623785 TTTGTAAACA
* * * *
28623795 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTGGATGA
1 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGACGA
* *
28623860 ACTTCCGAACTTGTCAAACTTTTGCAAGTTGTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
66 ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
* *
28623925 AATCCATTCCATCGATCAA-TTTTCGAAATACTCCATGGTTGTCAAAACGCATCATTTGGTCTAA
131 AATCCATTCCATCCAGCAATTTTTCGAAATACTCCATGGTTGTCAAAACGCATCATTTGGTCTAA
28623989 AT
196 AT
** * *
28623991 AGTTTTGGTCTTTGGA-TAACAAACTTATTTACGGGACAATTTTTTCTCTATTGGTTCTTGGACG
1 AGTTTTGGTCTTTAAATTAA-AAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGACG
* * * * *
28624055 AACTTCTGATCTTGTCCAACTTTTACAATTTCTTTTATAACTTCGGTTCATTTAAGTATTCAAGA
65 AACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGA
** *
28624120 TGATCCATTCCTTCCAGCAATTTTTCGAA
130 CAATCCATTCCATCCAGCAATTTTTCGAA
28624149 CATTCCATGC
Statistics
Matches: 136, Mismatches: 20, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
195 3 0.02
196 125 0.92
197 8 0.06
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (197 bp):
AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGACGA
ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
AATCCATTCCATCCAGCAATTTTTCGAAATACTCCATGGTTGTCAAAACGCATCATTTGGTCTAA
AT
Found at i:28624188 original size:196 final size:195
Alignment explanation
Indices: 28623795--28624191 Score: 487
Period size: 196 Copynumber: 2.0 Consensus size: 195
28623785 TTTGTAAACA
* * * *
28623795 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTGGATGA
1 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGACGA
* *
28623860 ACTTCCGAACTTGTCAAACTTTTGCAAGTTGTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
66 ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
* * * * *
28623925 AATCCATTCCATCGATCAATTTTCGAAATACTCCATGGTTGTCAAAACGCATCATTTGGTCTAAA
131 AATCCATTCCATCCAGCAATTTTCGAAATA-TCCATGCTTGTCAAAACACATCAGTTGGTCTAAA
28623990 T
195 T
** * *
28623991 AGTTTTGGTCTTTGGA-TAACAAACTTATTTACGGGACAATTTTTTCTCTATTGGTTCTTGGACG
1 AGTTTTGGTCTTTAAATTAA-AAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGACG
* * * * *
28624055 AACTTCTGATCTTGTCCAACTTTTACAATTTCTTTTATAACTTCGGTTCATTTAAGTATTCAAGA
65 AACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGA
** * * *
28624120 TGATCCATTCCTTCCAGCAATTTTTCGAACAT-TCCATGCTTG-GAAAATCACAGT-AGTTGGTT
130 CAATCCATTCCATCCAGCAA-TTTTCGAA-ATATCCATGCTTGTCAAAA-CACA-TCAGTTGGTC
28624182 TAAAT
191 TAAAT
28624187 AGTTT
1 AGTTT
28624192 GTCATTCTAT
Statistics
Matches: 171, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
195 7 0.04
196 153 0.89
197 9 0.05
198 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (195 bp):
AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGACGA
ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
AATCCATTCCATCCAGCAATTTTCGAAATATCCATGCTTGTCAAAACACATCAGTTGGTCTAAAT
Found at i:28626975 original size:196 final size:195
Alignment explanation
Indices: 28626582--28626978 Score: 429
Period size: 196 Copynumber: 2.0 Consensus size: 195
28626572 TTTGTAAACA
* * *
28626582 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTGGATGA
1 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGATGA
** * *
28626647 ACTTCCGAACTTGTCAAACTTTTGTAAGTTGTTTTATAACTTCGGTTCATTAAAGTATTTAAGAC
66 ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
* * * * * *
28626712 AATCCATTCCATCGATCAATTTCCGAAATACTCCATGGTTGTCAAAACGCATCATTTGGTCTAAA
131 AATCCATTCCATCCAGCAATTTCCGAAATA-TCCATGCTTGGCAAAACACATCAGTTGGTCTAAA
28626777 T
195 T
** * *
28626778 AGTTTTGGTCTTTGGA-TAACAAACTTATTTACGGGACAATTTTTTCTCTATTGGTTCTTGGATG
1 AGTTTTGGTCTTTAAATTAA-AAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGATG
* * * * * * * * * *
28626842 AACTTCTGATCTTGTCCAGCTTTTACGATTTCTTTTATAACTTTGGTTCATTTAAGTGTTCACGA
65 AACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGA
** * * * * * *
28626907 TGATTCATTCCTTCCAGCAATTTTTCGAACAT-TCCATGCTTGGGAAATCACATCAGTTGGTTTA
130 CAATCCATTCCATCCAGCAA-TTTCCGAA-ATATCCATGCTTGGCAAAACACATCAGTTGGTCTA
28626971 AAT
193 AAT
28626974 AGTTT
1 AGTTT
28626979 GTCATTCTGT
Statistics
Matches: 163, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
195 3 0.02
196 151 0.93
197 7 0.04
198 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (195 bp):
AGTTTTGGTCTTTAAATTAAAAACTTATTTACGGGACAATTATTTATCTATTGGTTCTTGGATGA
ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGAC
AATCCATTCCATCCAGCAATTTCCGAAATATCCATGCTTGGCAAAACACATCAGTTGGTCTAAAT
Found at i:28630683 original size:431 final size:431
Alignment explanation
Indices: 28629673--28636789 Score: 6818
Period size: 431 Copynumber: 16.7 Consensus size: 431
28629663 TAAAGTATTC
* * * *
28629673 AGAATTATTTGTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGATTTCTTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** *
28629738 ATAACTTTGCTTCCTTAAAGTATT-AGAGACAATCCATTCCTTCGATTAATTTTCTGAATATTCC
66 ATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* *
28629802 ATGCTCGTG-AAATCGCATCATTTGGTCTAAATAGATTGTCATATTT-TAAA-AAGTTTTGGTTT
130 ATGCTCG-GAAAATCACATCATTTGGTCTAAATAG-TTGTCA-ATTTGTAAACAAGTTTTGGTCT
* * * * * * * *
28629864 TTGGATTAAAAACTTACTTACGTGAGAATTATTTCTCTCATGATTCAAT-GAGGAACTTCCGAAA
192 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAAC
* * *
28629928 TTGTCAAACTTTTAC-ATGTTCTTTTTTAACTTC-GTTCCTTACAGTATTCAAAACGATCCATTC
256 TTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * * * *
28629991 CTTTGAGAAATTTTCTAAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGAC
320 CTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTC
* * * * * *
28630056 AATTTGAAAAC-AGCTTTTGGTCTTTGAATTAAAATCTTATATACATT
385 ATTTTGTAAACAAG-TTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * *
28630103 AGAATTATTTCTCTCTTGG-TCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAGTTCTATC
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
28630167 ATAACTT-GGTTCCTTATAGTATTCAGGACGATCCATTCCTTCCAGCAATTTTCTGAACATTCCA
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
* * * * * *
28630231 TGCTC-GAGAAATCATATCATTT-GTTTAAATAGTTGTTCAATTTGTAATCAAGTTTTTGTGTAT
131 TGCTCGGA-AAATCACATCATTTGGTCTAAATAGTTG-TCAATTTGTAAACAAGTTTTGGTCTTT
* * * * * * *
28630294 GAATTAAAATCATATTTACGTGAGAATTGTTTCACTCTTCGTTCTTTGACAAACTTCCGAACTAG
194 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG
* * * * * *
28630359 TCAAACTTTTACGAGTTCTTTTATATAACTTCGGCTCCTTAAAATATTCAAGACTATACTTTCCC
259 TCAAACTTTTACGAGTTC-TTT-TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * * * *
28630424 TCGAGCAATTTCCCAAACATTCCTTGCTCGGGAAATCGCATCGTTTGATGTAAATTG-TTGTCAT
322 TCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* * *
28630488 TTAGTAAACAAGTTTTGAG-CTTTAAATTAGAAACTTATTTACGTG
387 TTTGTAAACAAGTTTTG-GTCTTTGAATTAAAAACTTATTTACGTG
* * *
28630533 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTCTAGGAGTTCTTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * * * *
28630598 ATAACTTCAGTTCCTTAAAGTATTGAAGATGATACTTTCCTTCGAGCACTCTTCCGAACA-TACT
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
* * *
28630662 TGCTTGGAAAATCACATCATTTGATCTAAATAGTTGT---TTTGTAAACAAGTTTTGGTCTTTAA
131 TGCTCGGAAAATCACATCATTTGGTCTAAATAGTTGTCAATTTGTAAACAAGTTTTGGTCTTTGA
* * *
28630724 ATTAATAGCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
196 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * *
28630789 AAACTTTTACGTGTTC-TTTAAAACTTTGGTTCATTAAAGTATTCAAAACAATCCATTCCTTCGA
261 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
** * * * * * * *
28630853 TAAATTCTT-GAAATATTTCATGCTCGTGAAATCAGATCGTTTGGTCTAAATAGCTTGTCATTTT
326 GCAATT-TTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * *
28630917 TTAAATAAGTTTCGATCTTTTG-ATTAAAAACTTATTCACGTG
390 GTAAACAAGTTTTGGTC-TTTGAATTAAAAACTTATTTACGTG
* * * *
28630959 ACAATTGTTTCTCACTTGGTTCTTGGACGAACTT-CTAATCTTGTCCAACTTTTACGAGTTCTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTT
* * * *
28631023 TACAACTT-GGTTCATTAAAGTATTCAAGACGATCTATTCCTTCCAAG-AATTTT-TCGAACATT
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-CGAGCAATTTTCT-GAACATT
* * ** *
28631085 CCATGCTCGGGAAATCACATCATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAGTTTTTATGT
128 CCATGCTCGGAAAATCACATCATTTGGTCTAAATAG-TTGTCAATTTGTAAACAAGTTTTGGTCT
* ** ** * *
28631150 ATGAAGCAAACTCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTTGACGAACTTCCGAACT
192 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* *
28631215 TGTTAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
257 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * * * * * ** * * *
28631280 ACCAGCAATTTTTCGAGCGTTCCTTGCACAAGAAATCGCATCGTTTGGTCTAAACAGTTTGTCAT
322 TCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
**
28631345 TTTGTAAACAACATTTGGTCTTTGAA-TAAAAATCTTATTTACGTG
387 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA-CTTATTTACGTG
* *
28631390 TGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC-AATCTTGTCAAACTTTTACGAGTTCTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTT
* * *
28631454 TATAACTTCGTTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCC
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * * *
28631519 ATGCTC-GAGAAATCACTTCATTCGGTCTAAGTAGTTGTCATTTTGCAAACAAGTTTTGGTCTTT
130 ATGCTCGGA-AAATCACATCATTTGGTCTAAATAGTTGTCAATTTGTAAACAAGTTTTGGTCTTT
* * * *
28631583 AAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACTTCCGACCTTG
194 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG
* * * * * * * * *
28631648 TCAAACTTTTGCAAGTTCATTTATATCTTCAGTTCATTAAAGTATTCAAAACGGTCCATTCCGTC
259 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* ** ** * * *
28631713 GATCAATTTTTGAAATTTTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATAGATTGTCATAT
324 GAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-T
*
28631778 TT-TAAA-AAGTTTTGGTCTTT-AGATTAAAAACTTAATTACGTG
388 TTGTAAACAAGTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTG
* * * * * *
28631820 AGAATTATTTCTCTCATGATTCAAT-GAGGAACTTCCGAAATTGTCAAACTTTTAC-ATGTTCTT
1 AGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGTCAAACTTTTACGA-GTTCTT
* * * * *
28631883 TTAAAACTTC-GTTCCTTACAGTATTCAAAACGATCCATTCCTTTGAGAAATTTTCTGAACATTC
64 TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTC
* * *
28631947 CATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGACAATTTG-AAA-ATAGCTTTTGGTC
129 CATGCTCGGAAAATCACATCATTTGGTCTAAATAG-TTGTCAATTTGTAAACA-AG-TTTTGGTC
* * * * *
28632010 TTTTAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATC
191 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * * * *
28632075 TTGTCAAACTTTTAGGAGTTCTATCATAACTTTGGTTCCTTATAGTATT-TAGACGATCCATTCC
256 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * ** * * * * *
28632139 TTCCAGTAATTTTCTGAACATTCCATGCTCGAGAAATCATATCATTT-GTTTAAATAGTTTTTTA
321 TTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCA
* * ** * * ** *
28632203 ATTTGTAATCAAGTTTTTATGTATGAATTAAATTCATATTTACGTG
386 TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * *
28632249 AGAATTATTTCACTCTTGGTTTTTTGACAAACTTCCGAACTAGTCAAAACTTTTACGAGTTCTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC-AAACTTTTACGAGTTCTTT
* * * * * * * *
28632314 TATAACTTCGGTTCCTTAAAATATTCAAGACAATACTTTCCCTCCAGCAATTTCCCGAACATTCC
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * * * * * * *
28632379 TTGCTCGGGAAATCGCATCGTTTGATGTAAATAGTTGTCATTTTCTAAACAAGTTTTGGTCTTTA
130 ATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTGTCAATTTGTAAACAAGTTTTGGTCTTTG
* * *
28632444 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCAAACTTGT
195 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
* * * * * * *
28632509 CAAACATTTAGGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTGAATAC-ACTACTTTCCTTC
260 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTC
* * * * * * * *
28632573 GAGCACTCTTCCGAACAATACTTGC-CTGGGAAATCACATCATTTGATCTAACTAG-TTGTCATT
324 GAGCAATTTTCCAAACATTCCATGCTC-GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATT
* * *
28632636 TTGCAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATG
388 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
*
28632680 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGTGTTCTTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * *
28632745 ATAACTTCGGTTCATTAAAGTATTCAAAACAATCCATTCCTTCGATG-AATTTTC-GAAATATTC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTCTG-AACATTC
* * * * *
28632808 CATGCTCGTG-AAATCAGATCGTTTGGTCTAAATATCTTGTC-ATGTTTTAAATAAGTTTTGGTC
129 CATGCTCG-GAAAATCACATCATTTGGTCTAAATA-GTTGTCAAT-TTGTAAACAAGTTTTGGTC
* * * * * *
28632871 TTTGGATTAAAAACTTATTTACGTGACAATTGTTTCTCACTTGGTTCTTGGATGAACTTCTGATC
191 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
* * * * * * *
28632936 TTATCCAACTTTTAGGAGTTCCTTTACAACTTTGGTTCATTAAAGTATTCAAGACGATCCATTCC
256 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * * *
28633001 TTCCAGCAATTTTTCGAACATTCCATGTTCGGGAAATGACATCATTTGGTTTAAATAGTTTGTCA
321 TTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCA
* ** * * * *
28633066 ATTTGTAAACAAGTTTTTATGTATGAATTAAAATCTTATTTAAGTG
386 TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * *
28633112 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTTAAACTTTTATGAGTTCATTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * ** * * * * * *
28633177 ATATCTTCAGTTCATTAAAGTATTCAAGATAATCCATTCCTACCAGCAATTTTTTGAGCGTTCCT
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
* * * * **
28633242 TGCAC-GAGAAATCGCATCATTTGGTCTAAACAGTTTGTCAATTTGCAAACAACATTTGGTCTTT
131 TGCTCGGA-AAATCACATCATTTGGTCTAAATAG-TTGTCAATTTGTAAACAAGTTTTGGTCTTT
* * * * *
28633306 GAATTAAAATCTTATTTATGTGTGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC-AATTTT
194 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTT
* * *
28633370 TTCAAACTTTTACGTGTTCTTTTATAACTTCGTTTCCTTAAAGTATTCAAGACGATCCATTCCTT
258 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
** * *
28633435 CGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTCGGTCTAAATAG-TTGTCATT
323 CGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATT
* *
28633499 TTGCAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTG
388 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * *
28633543 AGAATTGTTTCTCTCTTGGTTGTTGGATGAACTTCCGAACTTGTCAAACTTTTGCTAGTTCTTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * * * *
28633608 ATATCTTCAGTTCATTAAAGTATTCAAAATGTTGCATTCCTTCAATCAATTTT-TGAAATATTCC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG-AACATTCC
* ** * * * * * *
28633672 TTGCTCGTG-AAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAATAATTTTTTGTCAT
130 ATGCTCG-GAAAATCACATCATTTGGTCTAAATAG-TTGTCAATTTGTAAACAAGTTTTGGTCTT
* * * ** *
28633736 TGGATTAAAAACTTATTTACGTGACAATTGTTTCT-TACTT-G---TTGGATGAACTTTTGATCT
193 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCCGAACT
* * * * * *
28633796 TGTCCAACTTTTACTAGTTCTTTTAGAACTTTGGTTCATTTAAGTATTCAAGACGATCCATTCCT
257 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * ** * * *
28633861 TCCAGTAATTTTTCAAACATTCCATGCTCAAGAAATCACATCAGTTGGTTTAAATAGTTTTTCAT
322 TCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* **
28633926 TTTGTAAACAAG-TTTGGTGTTTGAATTAAATTCTTATTTACGTG
387 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * * *
28633970 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTTAAACTATCA-TAG-AC---A
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * ** * * * * * *
28634030 AT-CCATTC-CTTCGATCAA-TTTTC----CGA-ACAATCCAT---GC----TTGTGAA-A-T--
66 ATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * * * *
28634076 -TG--C-G--CATCA-TTTA----GTCTAAATAGTT-TCGAATTATTTAAACTAGTTTTGTTCTT
130 ATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTGTC-AATT-TGTAAACAAGTTTTGGTCTT
* * * * ** *
28634129 TGGAGTAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATAAACTTCTGAACTT
193 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * * * * *
28634194 GTCAAACTTTTACGATTTCTTTTATGACTTTGCTTCCTTATAGTATT-AGAGACAATCCATTCCT
258 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCT
* * * * *
28634258 TCTATCAATTTTCCAAATATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGATTGTCAT
322 TCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* * *
28634323 ATTT-TAAA-AAGCTTT-GCCTTTTGGATTAAAAACTTATTTACGTG
387 -TTTGTAAACAAGTTTTGGTC-TTTGAATTAAAAACTTATTTACGTG
* * * ** * *
28634367 AGAATTATTTCTCTCTTGATTCTAT-GAGGAACTTCAAAAATTGTCAAACTTTTACAAGTTCTTT
1 AGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
* * ** *
28634431 TATAACTTC-GTTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAAAAATTTTCCGAACATTCC
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * *
28634495 ATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGACAATTTGAAAAC-AGCTTTTGGTCTT
130 ATGCTCGGAAAATCACATCATTTGGTCTAAATAG-TTGTCAATTTGTAAACAAG-TTTTGGTCTT
* * * * *
28634559 TGAATTAAAATCTTATTTACGTTAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT-CAAATCT
193 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CT
* * * * *
28634623 TGTCAAACTTTTACAAGTTCTTTCATAATTTTGGTTCCTTAAAGTATTCAGGACGATCCATTCCT
257 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * * * *
28634688 TCTAGCAATTTTCTAAACATTCCATGCTCGAGAAATCATATCATTTGGTTTAAATAGTTTTTCAA
322 TCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* * * * * *
28634753 TTTGTAATCAAGTTTTTGTGTATGAATTAAAATCATATTTACGTG
387 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * *
28634798 AGAATTGTTTCACTCTTGGTTCTTTGACAAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * *
28634863 ATAACTTCGGTTCCTTAAAATATTCAAGACTATACTTTCCCTCGAGCAATTTCCTAAACATTCCT
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
* * * * * * ** *
28634928 TGCTCGGGAAATCGCATCGTTTGATGTAAATAGTTGTCATTTTGTAAACAAGTTTTGGGATTTAA
131 TGCTCGGAAAATCACATCATTTGGTCTAAATAGTTGTCAATTTGTAAACAAGTTTTGGTCTTTGA
*
28634993 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
196 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
28635058 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTGAAGACGATACATTCCTTCGA
261 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * * * * * * *
28635123 GCACTCTTGCGAACACTACTTGCTTGGGAAATCGCATCATTTGATCTAAATAG-TTATCATTTTG
326 GCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG
*
28635187 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTG
391 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * *
28635228 AGAATTATTTCCCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTGCAAGTTCTTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * *
28635293 ATAACTTCAGTTCATTAAAGTATTCAAGACAATCCATTCCTTTGATCAATTTTC-GAAACATTCC
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG-AACATTCC
** * *
28635357 ACACTCGTGAGAA-CGCATCATTTGGTC----TA------AA----T-----AGTTTTGGTCTTT
130 ATGCTCG-GAAAATCACATCATTTGGTCTAAATAGTTGTCAATTTGTAAACAAGTTTTGGTCTTT
* * * * * ** *
28635402 GGATTAAAAACTTATATACGTGACAATAT-TTTCTCTATTTGTTCTTGGACGAACTTTTGATCTT
194 GAATTAAAAACTTATTTACGTGAGAAT-TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * * **
28635466 GTCAAACTTTTAGGAGTTCTTTTATAACTTCGATTCATTTGAGTATTCAAGACGATCCATTCCTT
258 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * *
28635531 -GCAGCAATTTTTCGAACATTCCATGC-CTGGGAAATCACATAAGTTGG-CTTAAATAGTTTGTC
323 CG-AGCAATTTTCCAAACATTCCATGCTC-GGGAAATCACATCATTTGGTC-TAAATAGTTTGTC
* * * *
28635593 ATTCTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACATG
385 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * *
28635640 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCAAACTTGTGAAAC----ATGTGTTATTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
** * * * * * * *
28635701 ATAACTTTAGTTCCTTAAAGTATTCAAGATGATCCATTCCTACTAGCAACTTTCCGAGCATTCCT
66 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
* * * * * * *
28635766 TGCAT-GGGAAATCGCATCATTTTGTCTAAACAGTTTGTCATTTTGTAAAAAAATATTTGGTCTT
131 TGC-TCGGAAAATCACATCATTTGGTCTAAATAG-TTGTCAATTTGTAAACAAGT-TTTGGTCTT
* * * *
28635830 TGAATTAAAATCTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTT
193 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * *
28635895 GTCAAACTTTTACGAGTTCTTTCATAACTTCGTTTCCTTACAGTATTCAAGACGATCCATTCCTT
258 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * * ** **
28635960 CGATCAATGTTCCGAACATTTCATGCTCGTGAAATCGTATCATTTGGTGC-AAATAGTTTCACAT
323 CGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGT-CTAAATAGTTTGTCAT
* * * *
28636024 TATT-TAAACTAGTATTGGTCTTTGGATTAAAAACATATTTACGTG
387 T-TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * *
28636069 AGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * *
28636134 ATAACTTTGCTTCCTTAGAGTATT-AGAGACAATCCATTCCTTCGATCAATTTTTTGAATATTCC
66 ATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
** * * *
28636198 ATGCTTATG-AAAT-AGCATCATTTGGTTTAAATAGATTGTCATATTT-TAAAAAAGTTTTGGCC
130 ATGC-TCGGAAAATCA-CATCATTTGGTCTAAATAG-TTGTCA-ATTTGTAAACAAGTTTTGGTC
* * * *
28636260 TTT-AGATTAAAAACTTATTTACGTGAGAATTATTTCTCTATTGATTC-TGTGACGAACTTCTGA
191 TTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTTCCGA
* * * *
28636323 AATTGTCAAACTTTTACAAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAAATGATCCATT
254 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * * *
28636387 CCTTTGAGAAATTTT-TAGAACATTCCATGCTCGGGAAGTCACACATCATTTGGTCTAAATAGTT
319 CCTTCGAGCAATTTTCCA-AACATTCCATGCTCGGGAAAT--CACATCATTTGGTCTAAATAGTT
* * * *
28636451 TGACAATTTGGAAAC-AGCTTTTGGTCTTTGAATTAAAATCTTATTTACGTG
381 TGTCATTTTGTAAACAAG-TTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* *
28636502 AGAATTATTTCTCTCTTGGTTCTTGGACGAAATTCC-AATCTTGTCAAACTTTTACGAGTTCTTT
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTT
* * * * * *
28636566 CATAACTTTGGTTCTTTAAAGTATTCAGGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCC
65 TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * * * *
28636631 ATGCTC-GAGAAATCATATCATTTGGTTTAAATAGTTTTTCAATTTGTAAACAAGTTTTTGTGTA
130 ATGCTCGGA-AAATCACATCATTTGGTCTAAATAG-TTGTCAATTTGTAAACAAGTTTTGGTCTT
* * * * * * * *
28636695 TGAATTAAAATCATACTTACGTGAGAATTGTTTCACTCTTGGTTCTTTGACAAACTTCTGAACTA
193 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
28636760 GTCAAACTTTTACGAGTTCTTTTATAACTT
258 GTCAAACTTTTACGAGTTCTTTTATAACTT
28636790 TGGGAAATCG
Statistics
Matches: 5452, Mismatches: 1032, Indels: 403
0.79 0.15 0.06
Matches are distributed among these distances:
391 2 0.00
392 5 0.00
393 58 0.01
394 2 0.00
396 5 0.00
397 196 0.04
398 8 0.00
399 2 0.00
401 1 0.00
402 11 0.00
403 7 0.00
406 1 0.00
407 7 0.00
408 84 0.02
409 4 0.00
410 2 0.00
411 160 0.03
412 94 0.02
415 11 0.00
416 3 0.00
417 1 0.00
419 1 0.00
420 7 0.00
421 7 0.00
422 6 0.00
423 2 0.00
425 117 0.02
426 151 0.03
427 219 0.04
428 270 0.05
429 496 0.09
430 985 0.18
431 1452 0.27
432 674 0.12
433 393 0.07
434 8 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (431 bp):
AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
TGCTCGGAAAATCACATCATTTGGTCTAAATAGTTGTCAATTTGTAAACAAGTTTTGGTCTTTGA
ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
GCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG
TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
Found at i:28635527 original size:196 final size:196
Alignment explanation
Indices: 28635193--28635553 Score: 498
Period size: 196 Copynumber: 1.8 Consensus size: 196
28635183 TTTGTAAACA
* * *
28635193 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGA
1 AGTTTTGGTCTTTAAATTAAAAACTTATATACGTGACAATTATTTCCCTATTGGTTCTTGGACGA
28635258 ACTTCCAAACTTGTCAAACTTTTGCAAGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGAC
66 ACTTCCAAACTTGTCAAACTTTTGCAAGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGAC
*
28635323 AATCCATTCCTTTG-ATCAA-TTTTCGAAACATTCCACACTCGTGAGAACGCATCATTTGGTCTA
131 AATCCATTCC-TTGCAGCAATTTTTCG-AACATTCCACACTCGTGAGAACGCATCATTTGGTCTA
28635386 AAT
194 AAT
** * *
28635389 AGTTTTGGTCTTTGGATTAAAAACTTATATACGTGACAA-TATTTTCTCTATTTGTTCTTGGACG
1 AGTTTTGGTCTTTAAATTAAAAACTTATATACGTGACAATTA-TTTCCCTATTGGTTCTTGGACG
*** * * **
28635453 AACTTTTGATCTTGTCAAACTTTTAG-GAGTTCTTTTATAACTTC-GATTCATTTGAGTATTCAA
65 AACTTCCAAACTTGTCAAACTTTT-GCAAGTTCTTTTATAACTTCAG-TTCATTAAAGTATTCAA
*
28635516 GACGATCCATTCCTTGCAGCAATTTTTCGAACATTCCA
128 GACAATCCATTCCTTGCAGCAATTTTTCGAACATTCCA
28635554 TGCCTGGGAA
Statistics
Matches: 144, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
195 6 0.04
196 131 0.91
197 7 0.05
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (196 bp):
AGTTTTGGTCTTTAAATTAAAAACTTATATACGTGACAATTATTTCCCTATTGGTTCTTGGACGA
ACTTCCAAACTTGTCAAACTTTTGCAAGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGAC
AATCCATTCCTTGCAGCAATTTTTCGAACATTCCACACTCGTGAGAACGCATCATTTGGTCTAAA
T
Found at i:28636565 original size:433 final size:431
Alignment explanation
Indices: 28635389--28636789 Score: 1556
Period size: 433 Copynumber: 3.3 Consensus size: 431
28635379 TGGTCTAAAT
* * * *
28635389 AGTTTTGGTCTTT-GGATTAAAAACTTATATACGTGACAA-TATTTTCTCTATTTGTTCTTGGAC
1 AGTTTTGGTCTTTAGAATTAAAAACTTATTTACGTGAGAATTA-TTTCTCTATTGGTTCTTGGAC
* * * * **
28635452 GAACTTTTGATCTTGTCAAACTTTTAGGAGTTCTTTTATAACTTCGATTCATTTGAGTATTCAAG
65 GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG
* *
28635517 ACGATCCATTCC-TTGCAGCAATTTTTCGAACATTCCATGC-CTGGGAAATCACATAAGTTGG-C
130 ACGATCCATTCCTTTG-AGCAATTTTTCGAACATTCCATGCTC-GGGAAATCACATCATTTGGTC
* * *
28635579 TTAAATAGTTTGTC-ATTCTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTATTTACATGAGA
193 -TAAATAGTTTGACAATT-TG-AAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGA
* * * * * *
28635643 ATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCAAACTTGTGAAAC----ATGTGTTATTTTATA
255 ATTATTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * ** * *
28635704 ACTTTAGTTCCTTAAAGTATTCA-AGATGATCCATTCCTACTAGCAACTTTCCGAGCATTCCTTG
319 ACTTT-GTTCCTTAAAGTATTCAGAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATG
** * * * *
28635768 CATGGGAAATCGCATCATTTTGTCTAAACAGTTTGTCAT-TTTGTAAAAA
383 C-TTAGAAATAGCATCATTTGGTTTAAATAGTTTGTCATATTTGTAAAAA
* * * *
28635817 AATATTTGGTCTTT-GAATTAAAATCTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTGGAC
1 AGT-TTTGGTCTTTAGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTATTGGTTCTTGGAC
* * * * *
28635881 GAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGTTTCCTTACAGTATTCAAG
65 GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG
* * * * * * **
28635946 ACGATCCATTCCTTCGATCAATGTTCCGAACATTTCATGCTCGTGAAATCGTATCATTTGGTGC-
130 ACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGT-CT
* * * * * *
28636010 AAATAGTTTCACATTATTT-AAACTAGTATTGGTCTTTGGATTAAAAACATATTTACGTGAGAAT
194 AAATAGTTTGACA--ATTTGAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAAT
* *
28636074 TATTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
257 TATTTCTCTCTTGGTTCTTGGACGAACTTC-CAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * *
28636139 TTTGCTTCCTTAGAGTATT-AGAGACAATCCATTCCTTCGATCAATTTTTTGAATATTCCATGCT
321 TTTG-TTCCTTAAAGTATTCAGAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCT
*
28636203 TATGAAATAGCATCATTTGGTTTAAATAGATTGTCATATTT-TAAAAA
385 TA-GAAATAGCATCATTTGGTTTAAATAGTTTGTCATATTTGTAAAAA
* *
28636250 AGTTTTGGCCTTTAG-ATTAAAAACTTATTTACGTGAGAATTATTTCTCTATTGATTC-TGTGAC
1 AGTTTTGGTCTTTAGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTATTGGTTCTTG-GAC
* * *
28636313 GAACTTCTGAAATTGTCAAACTTTTACAAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAA
65 GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG
* * * *
28636377 ATGATCCATTCCTTTGAGAAATTTTTAGAACATTCCATGCTCGGGAAGTCACACATCATTTGGTC
130 ACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT--CACATCATTTGGTC
28636442 TAAATAGTTTGACAATTTGGAAAC-AGCTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAA
193 TAAATAGTTTGACAATTT-GAAACAAG-TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAA
* *
28636506 TTATTTCTCTCTTGGTTCTTGGACGAAATTCCAATCTTGTCAAACTTTTACGAGTTCTTTCATAA
256 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCAA-CTTGTCAAACTTTTACGAGTTCTTTTATAA
*
28636571 CTTTGGTTCTTTAAAGTATTCAG-GACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGC
320 CTTT-GTTCCTTAAAGTATTCAGAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGC
* * * *
28636635 TCGAGAAATCA-TATCATTTGGTTTAAATAGTTTTTCA-ATTTGTAAACA
384 T-TAGAAAT-AGCATCATTTGGTTTAAATAGTTTGTCATATTTGTAAAAA
* * * * * * * * * * *
28636683 AGTTTTTGTGTAT-GAATTAAAATCATACTTACGTGAGAATTGTTTCACTCTTGGTTCTTTGACA
1 AGTTTTGGTCTTTAGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTATTGGTTCTTGGACG
*
28636747 AACTTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTT
66 AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
28636790 TGGGAAATCG
Statistics
Matches: 816, Mismatches: 123, Indels: 63
0.81 0.12 0.06
Matches are distributed among these distances:
428 2 0.00
429 239 0.29
430 5 0.01
431 63 0.08
432 107 0.13
433 391 0.48
434 9 0.01
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (431 bp):
AGTTTTGGTCTTTAGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTATTGGTTCTTGGACG
AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
CGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAA
ATAGTTTGACAATTTGAAACAAGTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATT
TCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGT
TCCTTAAAGTATTCAGAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTTAGAAA
TAGCATCATTTGGTTTAAATAGTTTGTCATATTTGTAAAAA
Found at i:28636870 original size:153 final size:154
Alignment explanation
Indices: 28636658--28636942 Score: 385
Period size: 153 Copynumber: 1.9 Consensus size: 154
28636648 TCATTTGGTT
* * * * *
28636658 TAAATAGTTTTTCAATTTGTAAACAAGTTTTTGTGTATGAATTAAAATCATACTTACGTGAGAAT
1 TAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTATAAATTAAAAACATACTTACGTGAGAAT
* * *
28636723 TGTTTCACTCTTGGTTCTTTGACAAAC-TTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAA
66 TGTTTCACTCCTGGTTCTTGGACAAACTTTC-GAACTAGTCAAACTTTTACAAGTTCTTTTATAA
28636787 CTTTGGGAAATCGCATTGTTTGATG
130 CTTTGGGAAATCGCATTGTTTGATG
* * * *
28636812 TAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTATAAATTAAAAACATACTTACGTGAGAAT
* * ** * *
28636876 TGTTTCTCTCCTGGTTGTTGGATGAACTTTCGAACTTGTCAAACTTTTGCAAGTTCTTTTATAAC
66 TGTTTCACTCCTGGTTCTTGGACAAACTTTCGAACTAGTCAAACTTTTACAAGTTCTTTTATAAC
28636941 TT
131 TT
28636943 CGGTTCATTA
Statistics
Matches: 112, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
153 102 0.91
154 10 0.09
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (154 bp):
TAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTCTATAAATTAAAAACATACTTACGTGAGAAT
TGTTTCACTCCTGGTTCTTGGACAAACTTTCGAACTAGTCAAACTTTTACAAGTTCTTTTATAAC
TTTGGGAAATCGCATTGTTTGATG
Found at i:28649418 original size:19 final size:19
Alignment explanation
Indices: 28649394--28649433 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
28649384 TGTCAAACTT
28649394 TTACGAGTTCTTTTATAAC
1 TTACGAGTTCTTTTATAAC
28649413 TTACGAGTTCTTTTATAAC
1 TTACGAGTTCTTTTATAAC
28649432 TT
1 TT
28649434 TGTTTCCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (19 bp):
TTACGAGTTCTTTTATAAC
Found at i:28649612 original size:235 final size:235
Alignment explanation
Indices: 28649188--28649649 Score: 651
Period size: 235 Copynumber: 2.0 Consensus size: 235
28649178 TTATGAGTAT
28649188 TTTTATAACATCGGTTCCTTAAAGTATTAGAGACAATCCATCCCTTCGATCAATTTTCCGAACAT
1 TTTTATAACATCGGTTCCTTAAAGTATTAGAGACAATCCATCCCTTCGATCAATTTTCCGAACAT
* ** * **
28649253 TCAATGCTTGTGAAATCAAATCATTTGGTCTAAATAGTTTCGCATTATTTAAACTAGTTTTGGTC
66 TCAATCCTCATGAAATCAAATCATTTGGTCTAAATAGATTCGCATTATTTAAAAAAGTTTTGGTC
* * * * *
28649318 TTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAAC
131 TTTGGATTAAAAACTTATTTAGGTGAGAATTATTTATCTCTTGATTCTTGGACGAACTTCCGAAA
* *
28649383 TTGTCAAACTTTTACGAGTTCTTTTATAACTTACGAGTTC
196 TTGTCAAACTTTTACAAGTTATTTTATAACTTACGAGTTC
* * * * * * *
28649423 TTTTATAACTTTGTTTCCTTAAAGTATTAGAGACAATCCATTCCTTCTATCAATTTTTCGAATAT
1 TTTTATAACATCGGTTCCTTAAAGTATTAGAGACAATCCATCCCTTCGATCAATTTTCCGAACAT
* **
28649488 TCCATCCTCATGAAATCGCATCATTTGGTCTAAATAGATT-GTCA-TATTTTAAAAAAGTTTTGG
66 TCAATCCTCATGAAATCAAATCATTTGGTCTAAATAGATTCG-CATTA-TTTAAAAAAGTTTTGG
* *
28649551 TCTTTGGATTAAAAACTTATTTAGGTGATAATTATTTATCTCTTGATTCTAT-GACGAACTTCTG
129 TCTTTGGATTAAAAACTTATTTAGGTGAGAATTATTTATCTCTTGATTCT-TGGACGAACTTCCG
28649615 AAATTGTCAAACTTTTACAAGTTATTTTATAACTT
193 AAATTGTCAAACTTTTACAAGTTATTTTATAACTT
28649650 CGTTCCTTAA
Statistics
Matches: 199, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
234 3 0.02
235 195 0.98
236 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (235 bp):
TTTTATAACATCGGTTCCTTAAAGTATTAGAGACAATCCATCCCTTCGATCAATTTTCCGAACAT
TCAATCCTCATGAAATCAAATCATTTGGTCTAAATAGATTCGCATTATTTAAAAAAGTTTTGGTC
TTTGGATTAAAAACTTATTTAGGTGAGAATTATTTATCTCTTGATTCTTGGACGAACTTCCGAAA
TTGTCAAACTTTTACAAGTTATTTTATAACTTACGAGTTC
Found at i:28652448 original size:19 final size:19
Alignment explanation
Indices: 28652424--28652463 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
28652414 TGTCAAACTT
28652424 TTACGAGTTCTTTTATAAC
1 TTACGAGTTCTTTTATAAC
28652443 TTACGAGTTCTTTTATAAC
1 TTACGAGTTCTTTTATAAC
28652462 TT
1 TT
28652464 TGTTTCCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (19 bp):
TTACGAGTTCTTTTATAAC
Found at i:28652625 original size:235 final size:235
Alignment explanation
Indices: 28652208--28652679 Score: 682
Period size: 235 Copynumber: 2.0 Consensus size: 235
28652198 TGTAAAACTT
28652208 TTACGAGTTCTTTTATAACATCGGTTCCTTAAAGTATTAGAGACAATCCATCCCTTCGATCAATT
1 TTACGAGTTCTTTTATAACATCGGTTCCTTAAAGTATTAGAGACAATCCATCCCTTCGATCAATT
* * **
28652273 TTCCGAACATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTTCACATTATTTAAACT
66 TTCCGAACATTCCATCCTCATGAAATCACATCATTTGGTCTAAATAGTTTCACATTATTTAAAAA
* * * *
28652338 AGTTTTGGTCTTTGGATTAAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCT-TGGATG
131 AGTTTTGGTCTTTGGATTAAAAACTTATTTAGGTGAGAATTATTTATCTCTTGATTCTAT-GACG
* * *
28652402 AACTT-TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
195 AACTTCT-GAAATTGTCAAACTTTTACAAGTTATTTTATAAC
* * * * *
28652443 TTACGAGTTCTTTTATAACTTTGTTTCCTTAAAGTATTAGAGACAATCCATTCCTTCTATCAATT
1 TTACGAGTTCTTTTATAACATCGGTTCCTTAAAGTATTAGAGACAATCCATCCCTTCGATCAATT
* * * *
28652508 TTTCGAATATTCCATCCTCATGAAATCGCATCATTTGGTCTAAATAGATTGTCATA-T-TTTAAA
66 TTCCGAACATTCCATCCTCATGAAATCACATCATTTGGTCTAAATAG-TT-TCACATTATTTAAA
*
28652571 AAAGTTTTGGTCTTTGGATTAAAAACTTATTTAGGTGATAATTATTTATCTCTTGATTCTATGAC
129 AAAGTTTTGGTCTTTGGATTAAAAACTTATTTAGGTGAGAATTATTTATCTCTTGATTCTATGAC
*
28652636 GAACTTCTGAAATTGTCAAACTTTTACAAGTTATTTTATGAC
194 GAACTTCTGAAATTGTCAAACTTTTACAAGTTATTTTATAAC
28652678 TT
1 TT
28652680 CGTTCCTTAA
Statistics
Matches: 211, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
235 202 0.96
236 5 0.02
237 4 0.02
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (235 bp):
TTACGAGTTCTTTTATAACATCGGTTCCTTAAAGTATTAGAGACAATCCATCCCTTCGATCAATT
TTCCGAACATTCCATCCTCATGAAATCACATCATTTGGTCTAAATAGTTTCACATTATTTAAAAA
AGTTTTGGTCTTTGGATTAAAAACTTATTTAGGTGAGAATTATTTATCTCTTGATTCTATGACGA
ACTTCTGAAATTGTCAAACTTTTACAAGTTATTTTATAAC
Found at i:28653477 original size:110 final size:109
Alignment explanation
Indices: 28653267--28653479 Score: 320
Period size: 110 Copynumber: 1.9 Consensus size: 109
28653257 TTGTTTCTCT
* *
28653267 CTTGGTTCTGGACGAACTTTTGAACTTGTCAAACTTTTGCGAGTTCTTTTATAATTTCTGTTCAT
1 CTTGGTTCTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAATTTCTGTTCAT
* * * *
28653332 TAAAGTATTCAAAATGATCCATTCTTTCGATCAATTTTCGATCA
66 TAAAGTATTCAAAACGATCCATTCCTTCCAGCAATTTTCGATCA
* *
28653376 CTTGGTTCTTGGACGAACTTTTGATCTTGTCTAACTTTTACGAGTTCTTTTACAAATTT-TGTTC
1 CTTGGTTC-TGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTA-AAATTTCTGTTC
*
28653440 ATTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTT
64 ATTAAAGTATTCAAAACGATCCATTCCTTCCAGCAATTTT
28653480 TGGAACATTC
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
109 8 0.09
110 80 0.86
111 5 0.05
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (109 bp):
CTTGGTTCTGGACGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAATTTCTGTTCAT
TAAAGTATTCAAAACGATCCATTCCTTCCAGCAATTTTCGATCA
Found at i:28654307 original size:432 final size:427
Alignment explanation
Indices: 28653376--28654664 Score: 1312
Period size: 432 Copynumber: 3.0 Consensus size: 427
28653366 TTTTCGATCA
* * * ** * * * * **
28653376 CTTGGTTCTTGGACGAACTTTTGATCTTGTCTAACTTTTACGAGTTCTTTTACAAATTTTGTTCA
1 CTTGGTTCTTAGACGAACTTTCGAACTACTCAAACTTTAACGAGTTCTTTTATAACTTCGGTTCA
* **
28653441 TTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTT-TGGAACATTCCATGCTCAGGAAATC
66 TTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTCT-GAACATTCCATG-TCTTGAAATC
** * * * * * * *
28653505 ATATCATTTGGTTTAAATAGTTTGTCAATTTGTAAACAAGTTTCTATGTATGAATTAAAATCTTA
129 GCATCATTTGGTCTAAATAGTTTGTC-ATTTTTAAACAAGTTTTTGTCTTTGAATTAAAAACTTA
* * * *
28653570 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTTGACGAACTTTCGAACTTGCCAAAC-TTTTACG
193 TTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTTA-G
* * ***
28653634 AGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTTG
257 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCA
**
28653699 AACATTCCATGCTTAGGAAAT-CA-C----ATC-----A-TTGTCATTTTGTAAAAAAGTTTTGG
322 AACATTCCATGCTCGGGAAATGCATCATTGATCTAAATAGTTGTCATTTTGTAAAAAAGTTTTGG
* * *
28653752 TGC-TAAAATTAAAAACTTATTTACGTGGGAATCGTTTCTCT
387 T-CTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * ** * *
28653793 CTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAGTTCTTTTATGACTTCGGTTCA
1 CTTGGTTCTTAGACGAACTTTCGAACTACTCAAACTTTAACGAGTTCTTTTATAACTTCGGTTCA
* * * *
28653858 TTAAATTATTCAAGACAATCCATTCCTTCTATCAATTTTCTGAATATTCCATGATCTTGAAATCG
66 TTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTCTGAACATTCCATG-TCTTGAAATCG
* *
28653923 CATCATTTGGTCTAAATAGTTTCTCATTATTTAAACAAGTTTTTGTCTTTGGATTAAAAACTTAT
130 CATCATTTGGTCTAAATAGTTTGTCATT-TTTAAACAAGTTTTTGTCTTTGAATTAAAAACTTAT
* *
28653988 TTACATGAGAATTATTTATCTCTTGGTTCTTGGACAAAC-TTCTGAACTAGTCAAACTTTTTATG
194 TTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTAGTCAAACTTTTTA-G
* * * * * *
28654052 AATTCTTTTATAACTAT-GGTGCCTTCAAGTATTCAAGACGATACTTTCCCTCGAGCAATTTTCC
257 AGTTCTTTTATAACT-TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* *
28654116 AAACATTCCTTGCTCGGGAAATCGCATCATATGATCTAAATAGTTGTCATTTTGTAAACAAGTTT
321 AAACATTCCATGCTCGGGAAAT-GCATCAT-TGATCTAAATAGTTGTCATTTTGTAAAAAAGTTT
*
28654181 TGGTCTTTAAATTAAAAACTTATTTACGCGAGAATTGTTTCTCT
384 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
28654225 CTTGGTTCTTAGATGAAC-TTCTGAACTACTCAATCTTTAATGAGTTCTTTTATAACTTCGGTT-
1 CTTGGTTCTTAGACGAACTTTC-GAACTACTCAAACTTTAACGAGTTCTTTTATAACTTCGGTTC
* * * * * * * * *
28654288 ACTTAAAGTATTAAAGACAATACTTTCCTTCGAGCACTTTTCCGAACAATACTTG-CTTGGGAAA
65 A-TTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTCTGAACATTCCATGTCTT--GAAA
* * * * *
28654352 TCGCATCATTTGATCTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTTTTTAAATTAAAAGCT
127 TCGCATCATTTGGTCTAAATAGTTTGTCATTTT-TAAACAAGTTTTTGTCTTTGAATTAAAAACT
*
28654416 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTA-TCAAACTTTTG
191 TATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC-TAGTCAAACTTTT-
* * * * * *
28654480 CAG-GTTATTTTATAACTTCGATTCAC-TAAAGTATTCAAGACTATCCATTCCTTCGATCAATTC
254 TAGAGTTCTTTTATAACTTCGGTTC-CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * * * **
28654543 TCGAAATATTTCATGCTCGTGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTTTTAAATT
318 TCCAAACATTCCATGCTCGGGAAA-TGCATCA-TTGATCTAAATAG-TTGTCA-TTTTGTAAAAA
* ** * * *
28654608 TGTTTTGGTCTTTGGATTAAAAGCTTATGTACGTGACAATTGTTTCTCT
379 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
28654657 CTTGGTTC
1 CTTGGTTC
28654665 ATTAAAGTAT
Statistics
Matches: 727, Mismatches: 111, Indels: 53
0.82 0.12 0.06
Matches are distributed among these distances:
416 6 0.01
417 209 0.29
418 77 0.11
419 1 0.00
420 2 0.00
421 1 0.00
426 3 0.00
429 1 0.00
430 86 0.12
431 102 0.14
432 239 0.33
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (427 bp):
CTTGGTTCTTAGACGAACTTTCGAACTACTCAAACTTTAACGAGTTCTTTTATAACTTCGGTTCA
TTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTCTGAACATTCCATGTCTTGAAATCGC
ATCATTTGGTCTAAATAGTTTGTCATTTTTAAACAAGTTTTTGTCTTTGAATTAAAAACTTATTT
ACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTTAGAGTT
CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCAAACA
TTCCATGCTCGGGAAATGCATCATTGATCTAAATAGTTGTCATTTTGTAAAAAAGTTTTGGTCTT
TAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
Found at i:28654372 original size:215 final size:216
Alignment explanation
Indices: 28653727--28654664 Score: 1004
Period size: 215 Copynumber: 4.3 Consensus size: 216
28653717 AATCACATCA
* * * *
28653727 TTGTCATTTTGTAAAAAAGTTTTGGTGC-TAAAATTAAAAACTTATTTACGTGGGAATCGTTTCT
1 TTGTCATTTTGTAAACAAGTTTTGGT-CTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * *
28653791 CTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAGTTCTTTTATGACTTCGGTT
65 CTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTT
* * * * * * * * **
28653856 -CATTAAATTATTCAAGACAATCCATTCCTTCTATCAATTTTCTGAATATTCCATGATCTTGAAA
130 AC-TTAAAGTATTCAAGACAATACATTCCTTCGAGCAATTTTCCGAACAATCCATGCTCGGGAAA
*
28653920 TCGCATCATTTGGTCTAAATAGT
194 TCGCATCATTTGATCTAAATAGT
* * ** * * *
28653943 TTCTCATTATT-TAAACAAGTTTTTGTCTTTGGATTAAAAACTTATTTACATGAGAATTATTTAT
1 TTGTCATT-TTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* *
28654007 CTCTTGGTTCTTGGACAAAC-TTCTGAACTAGTCAAACTTTTTATGAATTCTTTTATAACTAT-G
65 CTCTTGGTTCTTGGACGAACTTTC-GAACTAGTCAAAC-TTTTATGAGTTCTTTTATAACT-TCG
** * * * * * * *
28654070 GTGCCTTCAAGTATTCAAGACGATACTTTCCCTCGAGCAATTTTCCAAACATTCCTTGCTCGGGA
127 GTTACTTAAAGTATTCAAGACAATACATTCCTTCGAGCAATTTTCCGAACAATCCATGCTCGGGA
*
28654135 AATCGCATCATATGATCTAAATAG-
192 AATCGCATCATTTGATCTAAATAGT
*
28654159 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGCGAGAATTGTTTCTC
1 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * *
28654224 TCTTGGTTCTTAGATGAAC-TTCTGAACTACTCAATCTTTAATGAGTTCTTTTATAACTTCGGTT
66 TCTTGGTTCTTGGACGAACTTTC-GAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTT
* * * * * *
28654288 ACTTAAAGTATTAAAGACAATACTTTCCTTCGAGCACTTTTCCGAACAATACTTGCTTGGGAAAT
130 ACTTAAAGTATTCAAGACAATACATTCCTTCGAGCAATTTTCCGAACAATCCATGCTCGGGAAAT
28654353 CGCATCATTTGATCTAAATAG-
195 CGCATCATTTGATCTAAATAGT
* * *
28654374 TTGTCATTTTGTAAACAAGTTTTGGTTTTTAAATTAAAAGCTTATTTACATGAGAATTGTTTCTC
1 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
28654439 TCTTGGTTCTTGGACGAACTTTCGAACTTA-TCAAAC-TTT-TGCAGGTTATTTTATAACTTCGA
66 TCTTGGTTCTTGGACGAACTTTCGAAC-TAGTCAAACTTTTATG-A-GTTCTTTTATAACTTCGG
* * * * * *
28654501 TTCAC-TAAAGTATTCAAGACTATCCATTCCTTCGATCAATTCT-CGAA-ATATTTCATGCTCGT
128 TT-ACTTAAAGTATTCAAGACAATACATTCCTTCGAGCAATTTTCCGAACA-A-TCCATGCTCGG
* *
28654563 GAAATTGCATCATTTGGTCTAAATAGT
190 GAAATCGCATCATTTGATCTAAATAGT
* *** ** * * *
28654590 TTGTCATTTTTTTAAATTTGTTTTGGTCTTTGGATTAAAAGCTTATGTACGTGACAATTGTTTCT
1 TTGTCA-TTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCT
28654655 CTCTTGGTTC
65 CTCTTGGTTC
28654665 ATTAAAGTAT
Statistics
Matches: 610, Mismatches: 95, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
213 3 0.00
214 9 0.01
215 271 0.44
216 176 0.29
217 149 0.24
218 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (216 bp):
TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
TCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTA
CTTAAAGTATTCAAGACAATACATTCCTTCGAGCAATTTTCCGAACAATCCATGCTCGGGAAATC
GCATCATTTGATCTAAATAGT
Found at i:28655032 original size:216 final size:216
Alignment explanation
Indices: 28654658--28655716 Score: 1090
Period size: 216 Copynumber: 5.0 Consensus size: 216
28654648 TGTTTCTCTC
* * * *
28654658 TTGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAACAATTTTTCGAACATTCCATGCTCG
1 TTGGTTCCTTAAACTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCG
* * * *
28654723 GAAAATCACATCAGTTT-GTTTAAATAGTTTGTCATTTTGTAAATAAGTTTTGGTGTTTGAATTA
66 GGAAATCACATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * *
28654787 AAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGCTATTGGACGAACTTTCGAACTGGTCAAAC
130 AAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTATTGGACGAACTTTCGAACTTGTCAAAC
*
28654852 TTTTACGTGTTCTTTTATAAGT
195 TTTTACGAGTTCTTTTATAAGT
* * ** * * *
28654874 TTGGTTCCTTAAACTATTCAAGACCATCCATTCATTCCAGCAATTTTTTTAGCATTCCATGCACA
1 TTGGTTCCTTAAACTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCG
* * * * **
28654939 AGAAATCGCGTCATTTGGTCTAAGTAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAA
66 GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * * * * * *
28655004 AATCTTATTTACGTGAGAATTATTTCTCTTTTGGTTCTTGAATGAGC-TTCTGATCTTTTCAAAC
131 AAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTATTGGACGAACTTTC-GAACTTGTCAAAC
*
28655068 TTTTACGAGTTCTTTTATAACT
195 TTTTACGAGTTCTTTTATAAGT
* * * **
28655090 TTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTAGAGCAATTTTTCGAACATTCCATGCTCG
1 TTGGTTCCTTAAACTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCG
* * * * *
28655155 GGAAATCACATCATTCGGTCTAAATAGTTTGTAATTTTTTAAACAAGTTTTGGTGTTTAAATTAA
66 GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * * * * *
28655220 AAACTTATTTACGTGAGATTTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTATCTAACT
131 AAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTATTGGACGAACTTTCGAACTTGTCAAACT
**
28655285 TTTATTAGTTCTTTTATAAGT
196 TTTACGAGTTCTTTTATAAGT
* * * * * * * * * *
28655306 TCGGTTCATTAAATTATTCAAGACAATCCATTCGTTCAATCAAATTTTCAAATATTCCATGCTCT
1 TTGGTTCCTTAAACTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCG
* * * * * *
28655371 TGAAATCACATCATTTGGTCTAAATAGTTTCTCATTTTTTAAACAAGTTTTAGTCTTTGGACTAA
66 GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* *
28655436 AAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTT-G--G-A---T-GAA-TT-T---A--
131 AAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTATTGGACGAACTTTCGAACTTGTCAAACT
28655486 --T--GAGTTCTTTTATAAGT
196 TTTACGAGTTCTTTTATAAGT
* * * *
28655503 TCGATTCCTTAAACTATT-AGAGACAATCCATTCCTTCGATG-AATTTTTCGAATATTCCATGCT
1 TTGGTTCCTTAAACTATTCA-AGACAATCCATTCCTTCCA-GCAATTTTTCGAACATTCCATGCT
* ** * * *
28655566 CGTGAAATTGCATCATTTGGTCTAAATAGATTGCCATATTT-TAATA-AAGTTTTGGTCTTTGGA
64 CGGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAA-ACAAGTTTTGGTCTTTGAA
* * * *
28655629 TTAAAAACTTATTTACGTGAGAATTATTTCTCTCTT-GATACTTTGATGAACTTCCGAACTTGTC
127 TTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTA-TTGGACGAACTTTCGAACTTGTC
*
28655693 AAACTTTTACAAGTTCTTTTATAA
191 AAACTTTTACGAGTTCTTTTATAA
28655717 CTTCATTCCT
Statistics
Matches: 700, Mismatches: 116, Indels: 54
0.80 0.13 0.06
Matches are distributed among these distances:
196 3 0.00
197 153 0.22
198 5 0.01
199 1 0.00
200 1 0.00
201 1 0.00
203 1 0.00
205 3 0.00
206 3 0.00
207 3 0.00
208 2 0.00
210 1 0.00
212 1 0.00
213 1 0.00
214 1 0.00
215 7 0.01
216 511 0.73
217 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (216 bp):
TTGGTTCCTTAAACTATTCAAGACAATCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCG
GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTATTGGACGAACTTTCGAACTTGTCAAACT
TTTACGAGTTCTTTTATAAGT
Found at i:28655411 original size:808 final size:808
Alignment explanation
Indices: 28653852--28655472 Score: 2056
Period size: 808 Copynumber: 2.0 Consensus size: 808
28653842 TTATGACTTC
* * * * *
28653852 GGTTCATTAAATTATTCAAGACAATCCATTCCTTCTATCAATTTTCTGAATATTCCATGATCTTG
1 GGTTCATTAAAGTATTCAAGACAATCCATTCCTTCCAACAATTTTCTGAACATTCCATGATCTGG
* * *
28653917 AAATCGCATCATTTGGTCTAAATAGTTTCTCATTATTTAAACAAGTTTTTGTCTTTGGATTAAAA
66 AAATCACATCATTTGGTCTAAATAGTTTCTCATTATTTAAACAAGTTTTGGTCTTTGAATTAAAA
* *
28653982 ACTTATTTACATGAGAATTATTTATCTCTTGGTTCTTGGACAAACTTCTGAACTAGTCAAACTTT
131 ACTTATTTACATGAGAATTATTTATCTCTTGGCTATTGGACAAACTTCTGAACTAGTCAAACTTT
* * * * * * *
28654047 TTATGAATTCTTTTATAACTATGGTGCCTTCAAGTATTCAAGACGATACTTTCCCTCGAGCAATT
196 TTACGAATTCTTTTATAACTATGGTGCCTTAAACTATTCAAGACCATACATTCACTCCAGCAATT
* * **
28654112 TTCCAAACATTCCTTGCTCGGGAAATCGCATCATATGATCTAAATAGTTGTCATTTTGTAAACAA
261 TTCCAAACATTCCATGCACAAGAAATCGCATCATATGATCTAAATAGTTGTCATTTTGTAAACAA
** *
28654177 GTTTTGGTCTTTAAATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTAGATGAA
326 CATTTGGTCTTTAAATTAAAAACTTATTTACGCGAGAATTATTTCTCTCTTGGTTCTTAGATGAA
* *
28654242 CTTCTGAACTACTCAATCTTTAATGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTAAAGACA
391 CTTCTGAACTACTCAAACTTTAACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTAAAGACA
* * * * * * *
28654307 ATACTTTCCTTCGAGCACTTTTCCGAACAATACTTGCTTGGGAAATCGCATCATTTGATCTAAAT
456 ATACATTCCTTAGAGCAATTTTCCGAACAATACATGCTCGGGAAATCACATCATTCGATCTAAAT
* * *
28654372 AGTTGTCATTTTGTAAACAAGTTTTGGTTTTTAAATTAAAAGCTTATTTACATGAGAATTGTTTC
521 AGTTGTAATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACATGAGAATTGTTTC
*
28654437 TCTCTTGGTTCTTGGACGAACTTTCGAACTTATCAAACTTTTGCAGGTTATTTTATAACTTCGAT
586 TCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAACTTTTGCAGGTTATTTTATAACTTCGAT
* * *
28654502 TCACTAAAGTATTCAAGACTATCCATTCCTTCGATCAATTCTCGAAATATTTCATGCTCGTGAAA
651 TCACTAAAGTATTCAAGACAATCCATTCCTTCAATCAATTCTCGAAATATTCCATGCTCGTGAAA
** * *** * * *
28654567 TTGCATCATTTGGTCTAAATAGTTTGTCATTTTTTTAAATTTGTTTTGGTCTTTGGATTAAAAGC
716 TCACATCATTTGGTCTAAATAGTTTCTCATTTTTTTAAACAAGTTTTAGTCTTTGGACTAAAAAC
* *
28654632 TTATGTACGTGACAATTGTTTCTCTCTT
781 TTATGTACATGACAATTATTTCTCTCTT
* *
28654660 GGTTCATTAAAGTATTCAAGACGATCCATTCCTTCCAACAATTTT-TCGAACATTCCATGCTC-G
1 GGTTCATTAAAGTATTCAAGACAATCCATTCCTTCCAACAATTTTCT-GAACATTCCATGATCTG
* * * *
28654723 GAAAATCACATCAGTTT-GTTTAAATAGTTTGTCATT-TTGTAAATAAGTTTTGGTGTTTGAATT
65 G-AAATCACATCA-TTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTTGGTCTTTGAATT
* * * * * *
28654786 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGCTATTGGACGAACTT-TCGAACTGGTCAA
127 AAAAACTTATTTACATGAGAATTATTTATCTCTTGGCTATTGGACAAACTTCT-GAACTAGTCAA
** * * * * *
28654850 AC-TTTTACGTGTTCTTTTATAAGTTTGGTTCCTTAAACTATTCAAGACCATCCATTCATTCCAG
191 ACTTTTTACGAATTCTTTTATAACTATGGTGCCTTAAACTATTCAAGACCATACATTCACTCCAG
*** * * * * *
28654914 CAATTTTTTTAGCATTCCATGCACAAGAAATCGCGTCATTTGGTCTAAGTAGTTTGTCATTTTGT
256 CAATTTTCCAAACATTCCATGCACAAGAAATCGCATCATATGATCTAAATAG-TTGTCATTTTGT
* * * *
28654979 AAACAACATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTTTTGGTTCTT-
320 AAACAACATTTGGTCTTTAAATTAAAAACTTATTTACGCGAGAATTATTTCTCTCTTGGTTCTTA
* * ** * * *
28655043 GAATGAGCTTCTGATCTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
385 G-ATGAACTTCTGAACTACTCAAACTTTAACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATT
* * * * * * * *
28655108 CATGACGATCCATTCCTTAGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTCGG
449 AAAGACAATACATTCCTTAGAGCAATTTTCCGAACAATACATGCTCGGGAAATCACATCATTCGA
* *
28655173 TCTAAATAGTTTGTAATTTTTTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACGTGAGA
514 TCTAAATAG-TTGTAATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACATGAGA
* * * ** *
28655238 TTTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTATCTAACTTTTATTA-GTTCTTTTAT
578 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAACTTTT-GCAGGTTATTTTAT
* * * * * *
28655302 AAGTTCGGTTCATTAAATTATTCAAGACAATCCATTCGTTCAATCAAATTTTC-AAATATTCCAT
642 AACTTCGATTCACTAAAGTATTCAAGACAATCCATTCCTTCAATC-AATTCTCGAAATATTCCAT
*
28655366 GCTCTTGAAATCACATCATTTGGTCTAAATAGTTTCTCA-TTTTTTAAACAAGTTTTAGTCTTTG
706 GCTCGTGAAATCACATCATTTGGTCTAAATAGTTTCTCATTTTTTTAAACAAGTTTTAGTCTTTG
* *
28655430 GACTAAAAACTTATTTACATGAGAATTATTTCTCTCTT
771 GACTAAAAACTTATGTACATGACAATTATTTCTCTCTT
28655468 GGTTC
1 GGTTC
28655473 TTGGATGAAT
Statistics
Matches: 689, Mismatches: 114, Indels: 20
0.84 0.14 0.02
Matches are distributed among these distances:
807 94 0.14
808 397 0.58
809 191 0.28
810 7 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (808 bp):
GGTTCATTAAAGTATTCAAGACAATCCATTCCTTCCAACAATTTTCTGAACATTCCATGATCTGG
AAATCACATCATTTGGTCTAAATAGTTTCTCATTATTTAAACAAGTTTTGGTCTTTGAATTAAAA
ACTTATTTACATGAGAATTATTTATCTCTTGGCTATTGGACAAACTTCTGAACTAGTCAAACTTT
TTACGAATTCTTTTATAACTATGGTGCCTTAAACTATTCAAGACCATACATTCACTCCAGCAATT
TTCCAAACATTCCATGCACAAGAAATCGCATCATATGATCTAAATAGTTGTCATTTTGTAAACAA
CATTTGGTCTTTAAATTAAAAACTTATTTACGCGAGAATTATTTCTCTCTTGGTTCTTAGATGAA
CTTCTGAACTACTCAAACTTTAACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTAAAGACA
ATACATTCCTTAGAGCAATTTTCCGAACAATACATGCTCGGGAAATCACATCATTCGATCTAAAT
AGTTGTAATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACATGAGAATTGTTTC
TCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAACTTTTGCAGGTTATTTTATAACTTCGAT
TCACTAAAGTATTCAAGACAATCCATTCCTTCAATCAATTCTCGAAATATTCCATGCTCGTGAAA
TCACATCATTTGGTCTAAATAGTTTCTCATTTTTTTAAACAAGTTTTAGTCTTTGGACTAAAAAC
TTATGTACATGACAATTATTTCTCTCTT
Found at i:28655626 original size:197 final size:197
Alignment explanation
Indices: 28655285--28655665 Score: 561
Period size: 197 Copynumber: 1.9 Consensus size: 197
28655275 TTATCTAACT
* * * *
28655285 TTTATTAGTTCTTTTATAAGTTCGGTTCATTAAATTATTCAAGACAATCCATTCGTTCAATCAAA
1 TTTATGAGTTCTTTTATAAGTTCGATTCATTAAACTATTCAAGACAATCCATTCCTTCAATCAAA
* * *
28655350 TTTTCAAATATTCCATGCTCTTGAAATCACATCATTTGGTCTAAATAGTTTCTCATTTTTTAAAC
66 TTTTCAAATATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTGCTCATATTTTAAAC
28655415 AAGTTTTAGTCTTTGGACTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATG
131 AAGTTTTAGTCTTTGGACTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATG
28655480 AA
196 AA
* * *
28655482 TTTATGAGTTCTTTTATAAGTTCGATTCCTTAAACTATT-AGAGACAATCCATTCCTTCGATGAA
1 TTTATGAGTTCTTTTATAAGTTCGATTCATTAAACTATTCA-AGACAATCCATTCCTTCAATCAA
* * **
28655546 TTTTTCGAATATTCCATGCTCGTGAAATTGCATCATTTGGTCTAAATAGATTGC-CATATTTTAA
65 ATTTTCAAATATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAG-TTGCTCATATTTTAA
* * *
28655610 TA-AAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTG
129 -ACAAGTTTTAGTCTTTGGACTAAAAACTTATTTACATGAGAATTATTTCTCTCTTG
28655666 ATACTTTGAT
Statistics
Matches: 164, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
196 1 0.01
197 159 0.97
198 4 0.02
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (197 bp):
TTTATGAGTTCTTTTATAAGTTCGATTCATTAAACTATTCAAGACAATCCATTCCTTCAATCAAA
TTTTCAAATATTCCATGCTCGTGAAATCACATCATTTGGTCTAAATAGTTGCTCATATTTTAAAC
AAGTTTTAGTCTTTGGACTAAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATG
AA
Found at i:28662501 original size:216 final size:216
Alignment explanation
Indices: 28661992--28667008 Score: 5771
Period size: 216 Copynumber: 23.3 Consensus size: 216
28661982 ATTTTGTTAG
* * * * * * * * ** *
28661992 AGACAATCCATTTCTTCAATCAATTTTCCGAATATTCCATTCTCGTGAAATCGTATCATTTGGTT
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * *
28662057 TAAATAGATTG-CAATATTT-TAAAAAAGTTTTGGTCTTTGGATTAAAAACTTATTTAAGTGAGA
66 TAAATAGTTTGTC-AT-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
** * * *
28662120 ATTATTTCTCTCTTAATTCTTTGG-CAAACTTTCGAACTTGTCAAACTTTTAC-ATGTTCTTTTA
129 ATTATTTCTCTCTTGGTTC-TTGGACGAACTTCCGATCTTGTCAAACTTTTACGA-GTTCTTTTA
28662183 TAACTTC-GTTCCTTAAAGTATTCA
192 TAACTTCGGTTCCTTAAAGTATTCA
* * *
28662207 AGATGATCCATTCCTTCGAG-AAATTTTCTAAACATTCCATGCTCGAGG-AATCACATCATTTGG
1 AGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCG-GGAAATCACATCATTTGG
* * * * ** *
28662270 TCTAAATACTTTGTCATTTTCTAAACAACTTTTGGTCTTTGAAGTAAAATTTTATTTACATGAGA
64 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * **
28662335 ATTATTTCTCTCTTCGTTCTTGAACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTCCATA
129 ATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATA
28662400 ACTTCGGTTCCTTAAAGTATTCA
194 ACTTCGGTTCCTTAAAGTATTCA
* * * * *
28662423 AGACGTTCCATTCCTTCCAGCAATTTTTCGAACATTCCATGCTCGGGAAGTCATATCATTTGGTT
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * *
28662488 TAAATAGTTTGTCAATTTGTAAACAAGATTTT-GTGTATGAATTAAAATCTTATTTACGTGAGAA
66 TAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * * * *
28662552 TTGTTTCTCTCTTGGTTC-TGTGACGAACTTCAGAACTAGTTAAACTTCTATGAGTTCTTTTATA
130 TTATTTCTCTCTTGGTTCTTG-GACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATA
*
28662616 ACTTTGGTTCCTTAAAGTATTCA
194 ACTTCGGTTCCTTAAAGTATTCA
* * *** * * * * *
28662639 AGACAAT-AATTTCC-AAAAGCAA-TTTTCTGAGCATTCCTTGCTCGGAAAATCGCATCATTTGA
1 AGACGATCCA-TTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGG
* * *
28662701 TCTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTTTTTAAATTAAAAAACTTATTTACATGAG
64 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTTACGTGAG
*
28662765 AATTTTTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTAT
128 AATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTAT
* *
28662830 AACTTCGGTTCATTAAATTATTCA
193 AACTTCGGTTCCTTAAAGTATTCA
* * * ** *
28662854 AGACGATCCATTCCTTCGATCAATTTTCCGAATATTCCATGCTCTTGAAATCGCATCATTTGGTC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* *
28662919 TAAATAGATTGTCATATTT-TAAAAAAAGTTTTGG--TTT---TTAAAAACTTATTTACGTGAG-
66 TAAATAGTTTGTCAT-TTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * * * *
28662977 ATTATTTCTCCCTTGATTCTTTGATGAACTTTCGAACTTGTCAGACTTTTACGAGTTCTTTTATA
129 ATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATA
* *
28663042 ACTTC-CTTCATTAAAGTATTCA
194 ACTTCGGTTCCTTAAAGTATTCA
* * * * *
28663064 AGACGATCCATTTCTTCGAG-AAATTTTCTGAACATTCCATGCTCGAGAAATCATATCATATGGT
1 AGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGT
* * * *
28663128 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAATCTTATTTACATGAGAA
65 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * *
28663193 TTATTTCTCTCTTAGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTATGAGTTCATTCATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
28663258 CTTCGGTTCCTTAAAGTATTCA
195 CTTCGGTTCCTTAAAGTATTCA
* * * *
28663280 AGACGATCCATTCCTTCCAGCAATTTTCCGAACATTCCATGCTCGGGAAATCATATCATTTGGTT
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * * * *
28663345 TAAATAGTTTTTCAATTTGTAAACAAGTTTTTGTGTATGAATTAAAATCTTATTTACGTGAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
28663410 TGTTTCTCTCTTGGTTCTTAGACGAACTTCAGAACTAGTCAAACTTTTACGAGTTCTTTTATAAC
131 TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAAC
*
28663475 TTTGGTTCCTTAAAGTATTCA
196 TTCGGTTCCTTAAAGTATTCA
* * * * * * * * * *
28663496 AGATGATCCAATCCTACCAGTAATTTTCCGAGCATTCCATGCACGAGAAATCTCATCATTTGGTC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* **
28663561 TAAATAGTTTGCCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATA-TTATTTACGTGAGAA
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-ACTTATTTACGTGAGAA
* * *
28663625 TTATTTCTCTCTAGGTTCTTGGACGAACATCCGATCTTGTCAAACTTTTACTAGTTCTTTTATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
* ** * *
28663690 ATTCTATTCCTTAAACTGTTCA
195 CTTCGGTTCCTTAAAGTATTCA
* * * *
28663712 AGATGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGTTCGGGAAATCACATCATTCGGTC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* *
28663777 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACGTGAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
28663842 TGTTTCTCTCTTGGTTCTTGGATGAACTTTCGATCTTGTAAAACTTTTACGAGTTCTTTTATAAC
131 TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *
28663907 TTCGATTCATTAAATTATTCA
196 TTCGGTTCCTTAAAGTATTCA
* * * * ** *
28663928 AGACGATCCATTTCTTCGATCAATTTTCCGAATATTCCATGCTCTTGAAATCACATCATTTTGTC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * * *
28663993 TAAATAGTTTCTAATTTTTTAAACAAGTTTTGGTCTTTCG-ATTAAAAATTTATTTATGTGAGAA
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAA
* * * * * *
28664057 TTATTTCTCTCTTGATTCTTGGACAAACTTCCAAACATGTCAATCTTTTACGAGTTCTTTTATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
*
28664122 CTTCGGTTCCTTAAAGTATTGA
195 CTTCGGTTCCTTAAAGTATTCA
* ** * * * * * * * * * * * *
28664144 AGACAAAACTTTCCTTTGAGCACTTTTCCAAACAATACTTGCTTGGAAAATCGCATCATTTGATC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * * * *
28664209 TAAATAGTTT-TTATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTAATTATGTGAAAAC
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * *
28664273 TGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAGCATGTTAAACTTTTGCGAGTTCTTTTATAAC
131 TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAAC
*
28664338 TTCGGTTCATTAAAGTATTCA
196 TTCGGTTCCTTAAAGTATTCA
* * * * *
28664359 AAACGATCCATTCCTTCGATCAATTTTT-GAAATATTTCATGCTCGTGAAATCACATCATTTGGT
1 AGACGATCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGGGAAATCACATCATTTGGT
* * * *
28664423 CTAAATAGTTTGTCATTTTTTAAATAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGACAA
65 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
28664488 TTATTTCTCTCTTGGTTCTTAGACGAACTTCTGATCTTGTCCAACTTTTACGAGTTCTTTTATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
* *
28664553 CTTTGGTTCATTAAAGTATTCA
195 CTTCGGTTCCTTAAAGTATTCA
* * * * * * *
28664575 AGACGATCCATTCCTTCCAGAAATTTTTCGATCATTCCATGCTCAGGAAGTCACATCAGTTGGTT
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * *
28664640 TAAATAGTTTTGTCATTTTGTAAACAAGTTCTGGTGTTTGAATTAAAATCTTATTTACGTGAGAA
66 TAAATAG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * ** * * * * *
28664705 TTGTTTCTCTCTTGGTTGTTGGACGAACTTTTGAACTTGTTAAACATTTATGAGTTCTTATATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
** * *
28664770 CTTTAGTTTCTTAAAGCATTCA
195 CTTCGGTTCCTTAAAGTATTCA
* * * * * * * *
28664792 AGACGATCCATTCCTACCAGTAA-TTTTCTGAGCATTTCATGCACGAGAAATCGCATCATTTGGT
1 AGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGT
* ** * *
28664856 CTAAATAGTTTGTCATCTTGTAAACAACATTTGGTCTTTGAATTGAAATCTTATTTACGTGAGAA
65 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * *
28664921 TTATTTCTCTCTTGGTTCTTGGATGAACTTCTGATCTTGTCAAACTTTTACAAGTTCTATTATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
28664986 CTTCGGTTCCTTAAAGTATTCA
195 CTTCGGTTCCTTAAAGTATTCA
* * * *
28665008 TA-ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATTCTAGGGAAATCACATCATTCGAT
1 -AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGT
* * *
28665072 CTAAATAGTTTATCATTTTGTAAACAAGTTTTGGTGTTTAAATTAAAAACTTATTTACGTGAGAA
65 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * *
28665137 TTATTTCTCTCTTGGTTTTTGGACGAACTTTCGATTTTGTCAAACTTTTACGAGTTCTTTTATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
* *
28665202 CTTCGGTTCATTAAATTATTCA
195 CTTCGGTTCCTTAAAGTATTCA
* * * * **
28665224 AGACGATCCATTCCTTCGATCAATTTTCCGAATATTCCATGCTCGTGAAATCGTATCATTTGGTC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * *
28665289 TAAATAGATTGTCATATTT-TAAAAAAGTTGTGGTCTTTGGATTAAAAACTTATTTACGTGAGAA
66 TAAATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * * * * *
28665353 TTATTTCTCTCTTGATTCTTTGATGAACTTCTGAACTTGACAAATTTTTACGAGTTCTTCTATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
*
28665418 CTTCGGTTCCTTAAAGTATTGA
195 CTTCGGTTCCTTAAAGTATTCA
* * * * * * * * * * * * * *
28665440 AGACAATACTTTCCTTCAAGCACTTTTCCAAATAATACTTGCTTGGGAAATCGCATCATTTGATC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * * *
28665505 TAAATAG-TTG-CATTTTATAAACAACTTTTGGTCTTTGAATTTAAATCTTATTTATGTGAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
28665568 TA-TT-TCTCTTAGTTCTTGGACGAACTTTCGATCTCGTCAAACTTTTACTAGTTCTTTCATAAC
131 TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAAC
*
28665631 TTCGGTTCCTTAAAGTTTTCA
196 TTCGGTTCCTTAAAGTATTCA
* * * * * * *
28665652 AGACGATCCATTCTTTCCAGTAATTTTTTGAAGATTCCATGCTCGGGAAATCATATCATTTGGTT
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * * *
28665717 TAAATAGTTTGTCAATTTGTAAACAAGTTTTTGTGTATGAATTAAAATCTTATTTACGTGAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * *
28665782 TGTTTCTCTCTTGATTCTTTGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATAAC
131 TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAAC
*
28665847 TCCGGTTCCTTAAAGTATTCA
196 TTCGGTTCCTTAAAGTATTCA
* * * * * * * *
28665868 AGATGATAC-TTTCTCTCAAGCAATTTTTTGAACATTCCTTGCTCGGGAAATCGCATCATTTGAT
1 AGACGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGT
* *
28665932 CTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAA
65 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * *
28665996 TTGTTTCTCTCTTGGTTCTTGGACGAACATT-TGAACTTCTCAAACTTTTACGAGTTCTTTTATA
130 TTATTTCTCTCTTGGTTCTTGGACGAAC-TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATA
* *
28666060 ACTTCGATTCCTTAAAGTATTGA
194 ACTTCGGTTCCTTAAAGTATTCA
* * * ** * * * ** *
28666083 AGACCATACTTTCCTTCGAGCTCTTTTTCGAACAATACTTGCTTAGGAAATCACATCATTTGATC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* *
28666148 TAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * **
28666212 TGTTTCTCTCTTGGTTCTTGGGCGAACTTTTGATCTTGTCCAAA-TTTTACGAGTTCTTTTATAA
131 TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGT-CAAACTTTTACGAGTTCTTTTATAA
* * *
28666276 CTTCAGTTCATTAAAGCATTCA
195 CTTCGGTTCCTTAAAGTATTCA
* * * * * *
28666298 AGACGATCCAATCCTTCCAGCAATTTTTCAAACATTCCATGCTCGAGAAATCACATCAGTTGGTT
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
* * * *
28666363 TAAATAGTTTGTTATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAATCTTCTTTACGTGAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * * *
28666428 TGTTTCTCTCTTGGTTGTTGGATGAACTTCCGAACTTGTTAAACTTTTACGAGTTCTTTTACAAC
131 TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAAC
*
28666493 TTTGGTTCCTTAAAGTATTCA
196 TTCGGTTCCTTAAAGTATTCA
* * * * * *
28666514 AGACGATCCATTCCTACCAGTAATTTTTCGATCATTCCATGCACGGGAAATCGCATCATTTGGTC
1 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
** * *
28666579 TAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTATTTACGTAAGAAT
66 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
28666644 TATTTCCCTCTTGGTTCTTGGATGAACTTCCGATCATGTCAAACTTTTACGAGTTCTTTTATGAC
131 TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAAC
*
28666709 TTTGGTTCCTTATAA-TATTCA
196 TTCGGTTCCTTA-AAGTATTCA
* * * *
28666730 AGATGATCCATTCCTTCGAGCAA-TTTTCTGAGCATTCCATGCTCGAGAAATCACATCATTCGGT
1 AGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGT
* * * *
28666794 CTAAATAGTTTATCATTTTGTAAACAAGTTTTGGTGTTTAAAATAAAAACTTATTTACGTGAGAA
65 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* * * * *
28666859 TTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGATCTTGTCAAACTTTTACAAATTCTTTTATAA
130 TTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAA
* * *
28666924 CTTTGGTTCATTAAATTATTCA
195 CTTCGGTTCCTTAAAGTATTCA
* * * ** *
28666946 ATG-CGATCCATTCCTTCGATCAA-TTTTCTGAATATTCCATACTCTTGAAATCGCATCATTTGG
1 A-GACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGG
28667009 GGAGAAAAAA
Statistics
Matches: 4061, Mismatches: 680, Indels: 121
0.84 0.14 0.02
Matches are distributed among these distances:
209 20 0.00
210 78 0.02
211 65 0.02
212 136 0.03
213 14 0.00
214 153 0.04
215 911 0.22
216 2449 0.60
217 220 0.05
218 15 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC
TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAAC
TTCGGTTCCTTAAAGTATTCA
Found at i:28681611 original size:23 final size:23
Alignment explanation
Indices: 28681577--28681952 Score: 547
Period size: 23 Copynumber: 16.3 Consensus size: 23
28681567 CCAATATCTA
28681577 TGCTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
* * *
28681600 TGCTTAAGTATTAATGTGACTTA
1 TGCTTAAATATTAATGTGATTTG
* *
28681623 TGCTTAAATATTAATATGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
28681646 CGCTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
28681669 TGCTTAAATATTAATATTATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
28681692 TGCTCAAATATTAATGT-ATTTTA
1 TGCTTAAATATTAATGTGA-TTTG
28681715 TGCTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
*
28681738 TGCTCAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
*
28681761 TGCTTAAATATTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
28681784 TGCTCAAATATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
28681807 TGCTTAAATATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
28681830 TGCTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
*
28681853 TGCTTAAATATTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
*
28681876 TGCTCAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
28681899 TGCTTAAATATTAATATGATTTA
1 TGCTTAAATATTAATGTGATTTG
* *
28681922 TGATTAAATATTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
28681945 TGCTTAAA
1 TGCTTAAA
28681953 GAATTAAGAT
Statistics
Matches: 317, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
22 1 0.00
23 315 0.99
24 1 0.00
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.47
Consensus pattern (23 bp):
TGCTTAAATATTAATGTGATTTG
Found at i:28681691 original size:92 final size:92
Alignment explanation
Indices: 28681577--28681952 Score: 619
Period size: 92 Copynumber: 4.1 Consensus size: 92
28681567 CCAATATCTA
* * * *
28681577 TGCTTAAATATTAATGTGATTTGTGCTTAAGTATTAATGTGACTTATGCTTAAATATTAATATGA
1 TGCTTAAATATTAATATGATTTGTGCTCAAATATTAATGTGATTTATGCTTAAATATTAATATGA
*
28681642 TTTACGCTTAAATATTAATGTGATTTG
66 TTTATGCTTAAATATTAATGTGATTTG
* *
28681669 TGCTTAAATATTAATATTATTTGTGCTCAAATATTAATGT-ATTTTATGCTTAAATATTAATGTG
1 TGCTTAAATATTAATATGATTTGTGCTCAAATATTAATGTGA-TTTATGCTTAAATATTAATATG
* *
28681733 ATTTGTGCTCAAATATTAATGTGATTTG
65 ATTTATGCTTAAATATTAATGTGATTTG
*
28681761 TGCTTAAATATTAATATGATTTGTGCTCAAATATTAATGTGATTTATGCTTAAATATTAATGTGA
1 TGCTTAAATATTAATATGATTTGTGCTCAAATATTAATGTGATTTATGCTTAAATATTAATATGA
28681826 TTTATGCTTAAATATTAATGTGATTTG
66 TTTATGCTTAAATATTAATGTGATTTG
*
28681853 TGCTTAAATATTAATATGATTTGTGCTCAAATATTAATGTGATTTGTGCTTAAATATTAATATGA
1 TGCTTAAATATTAATATGATTTGTGCTCAAATATTAATGTGATTTATGCTTAAATATTAATATGA
* *
28681918 TTTATGATTAAATATTAATATGATTTG
66 TTTATGCTTAAATATTAATGTGATTTG
28681945 TGCTTAAA
1 TGCTTAAA
28681953 GAATTAAGAT
Statistics
Matches: 266, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
91 1 0.00
92 264 0.99
93 1 0.00
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.47
Consensus pattern (92 bp):
TGCTTAAATATTAATATGATTTGTGCTCAAATATTAATGTGATTTATGCTTAAATATTAATATGA
TTTATGCTTAAATATTAATGTGATTTG
Found at i:28685242 original size:25 final size:25
Alignment explanation
Indices: 28685221--28685372 Score: 135
Period size: 25 Copynumber: 6.0 Consensus size: 25
28685211 GGCTACGTGT
* *
28685221 CAAAAAGAATATTGCTCATACGTGC
1 CAAAAAGAATATCGCTCATACGAGC
* * *
28685246 CAAAAATAATATCACTCATGCGAGC
1 CAAAAAGAATATCGCTCATACGAGC
* *
28685271 CATACAA-AATATTGCTCATACGAGC
1 CA-AAAAGAATATCGCTCATACGAGC
*
28685296 CAAATAGAATATCGCTCATACGAGC
1 CAAAAAGAATATCGCTCATACGAGC
* *
28685321 CAAAATTAGAATATCTCTCTTACGAGC
1 CAAAA--AGAATATCGCTCATACGAGC
* * * **
28685348 TAGACAGAATATCGCTTTTACGAGC
1 CAAAAAGAATATCGCTCATACGAGC
28685373 TAGACAGAAA
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
24 2 0.02
25 78 0.76
26 3 0.03
27 20 0.19
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.24
Consensus pattern (25 bp):
CAAAAAGAATATCGCTCATACGAGC
Found at i:28685373 original size:25 final size:25
Alignment explanation
Indices: 28685278--28685397 Score: 98
Period size: 25 Copynumber: 4.7 Consensus size: 25
28685268 AGCCATACAA
* * * * *
28685278 AATATTGCTCATACGAGCCAAATAG
1 AATATCGCTCTTACGAGCTAGACAG
* * * *
28685303 AATATCGCTCATACGAGCCAAAATTAG
1 AATATCGCTCTTACGAG-CTAGA-CAG
*
28685330 AATATCTCTCTTACGAGCTAGACAG
1 AATATCGCTCTTACGAGCTAGACAG
*
28685355 AATATCGCTTTTACGAGCTAGACAG
1 AATATCGCTCTTACGAGCTAGACAG
*
28685380 AA-ATACGCTCTTATGAGC
1 AATAT-CGCTCTTACGAGC
28685398 CAGAATCAGA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
24 2 0.02
25 54 0.67
26 7 0.09
27 18 0.22
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26
Consensus pattern (25 bp):
AATATCGCTCTTACGAGCTAGACAG
Found at i:28692356 original size:25 final size:25
Alignment explanation
Indices: 28692314--28692487 Score: 136
Period size: 25 Copynumber: 6.9 Consensus size: 25
28692304 TTTGGCTCCA
* * *
28692314 ACGAGCCCAAACAAAATATTGCTCAT
1 ACGAG-CCAGACAGAATATCGCTCAT
* *
28692340 ACGTGCCAGATAGAATATCGCTCAT
1 ACGAGCCAGACAGAATATCGCTCAT
* *
28692365 ACGAGCCAGACAAAATATCACTCAT
1 ACGAGCCAGACAGAATATCGCTCAT
* * *
28692390 ACGAGCCAAACA-AATATCACTTAT
1 ACGAGCCAGACAGAATATCGCTCAT
* *
28692414 ACGAGCTAGATAGAATATCGCTCAT
1 ACGAGCCAGACAGAATATCGCTCAT
* * * *
28692439 A-GAAGCCATAATCAGAATTTCACTCTT
1 ACG-AGCCA-GA-CAGAATATCGCTCAT
* *
28692466 ACGAGCCAAATAGAATATCGCT
1 ACGAGCCAGACAGAATATCGCT
28692488 ATTTTGAGCG
Statistics
Matches: 118, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
24 21 0.18
25 72 0.61
26 7 0.06
27 17 0.14
28 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.22
Consensus pattern (25 bp):
ACGAGCCAGACAGAATATCGCTCAT
Found at i:28692431 original size:49 final size:50
Alignment explanation
Indices: 28692335--28692484 Score: 144
Period size: 49 Copynumber: 3.0 Consensus size: 50
28692325 CAAAATATTG
* * * * * * *
28692335 CTCATACGTGCCAGATAGAATATCGCTCATACGAGCCAGACAAAATATCA
1 CTCATACGAGCCAAACAGAATATCACTTATACGAGCCAGATAGAATATCA
* *
28692385 CTCATACGAGCCAAACA-AATATCACTTATACGAGCTAGATAGAATATCG
1 CTCATACGAGCCAAACAGAATATCACTTATACGAGCCAGATAGAATATCA
* *
28692434 CTCATA-GAAGCCATAATCAGAATTTCACTCT-TACGAGCCAAATAGAATATC
1 CTCATACG-AGCCA-AA-CAGAATATCACT-TATACGAGCCAGATAGAATATC
28692485 GCTATTTTGA
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
48 1 0.01
49 37 0.45
50 16 0.19
51 2 0.02
52 26 0.31
53 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.23
Consensus pattern (50 bp):
CTCATACGAGCCAAACAGAATATCACTTATACGAGCCAGATAGAATATCA
Found at i:28692446 original size:74 final size:76
Alignment explanation
Indices: 28692314--28692484 Score: 195
Period size: 74 Copynumber: 2.2 Consensus size: 76
28692304 TTTGGCTCCA
** * *
28692314 ACGAGCCCAAACAAAATATTGCTCATACGTGCCAGATAGAATATCGCTCATACGAGCCA-GA-CA
1 ACGAG-CCAAAC-AAATATCACTCATACGAGCCAGATAGAATATCGCTCATACGAGCCATAATCA
28692377 AAATATCACTCAT
64 AAATATCACTCAT
* * *
28692390 ACGAGCCAAACAAATATCACTTATACGAGCTAGATAGAATATCGCTCATA-GAAGCCATAATCAG
1 ACGAGCCAAACAAATATCACTCATACGAGCCAGATAGAATATCGCTCATACG-AGCCATAATCAA
* *
28692454 AATTTCACTCTT
65 AATATCACTCAT
*
28692466 ACGAGCCAAATAGAATATC
1 ACGAGCCAAACA-AATATC
28692485 GCTATTTTGA
Statistics
Matches: 81, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
73 1 0.01
74 39 0.48
75 7 0.09
76 28 0.35
77 6 0.07
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.22
Consensus pattern (76 bp):
ACGAGCCAAACAAATATCACTCATACGAGCCAGATAGAATATCGCTCATACGAGCCATAATCAAA
ATATCACTCAT
Found at i:28696363 original size:20 final size:20
Alignment explanation
Indices: 28696330--28696398 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 20
28696320 GTTAATCATG
* *
28696330 CCCTGTTTGTACTTCGGTGC
1 CCCTATTTGCACTTCGGTGC
* * *
28696350 CCTTATTTGCACTTTGGTAC
1 CCCTATTTGCACTTCGGTGC
*
28696370 CCCTATTTACACTTCGGTGC
1 CCCTATTTGCACTTCGGTGC
28696390 CCCTATTTG
1 CCCTATTTG
28696399 TACAATTGTA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.12, C:0.30, G:0.17, T:0.41
Consensus pattern (20 bp):
CCCTATTTGCACTTCGGTGC
Found at i:28701224 original size:19 final size:19
Alignment explanation
Indices: 28701190--28701249 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
28701180 TTTTACAAAG
28701190 TATCGATACCTCAAAAAAATT
1 TATCGATA--TCAAAAAAATT
* *
28701211 TATCGATATCAAAATAACT
1 TATCGATATCAAAAAAATT
* * *
28701230 TATTGATTTCGAAAAAATT
1 TATCGATATCAAAAAAATT
28701249 T
1 T
28701250 GAGAAAACAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
19 24 0.75
21 8 0.25
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (19 bp):
TATCGATATCAAAAAAATT
Found at i:28710995 original size:5 final size:5
Alignment explanation
Indices: 28710985--28711018 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
28710975 GTTGTTGAGA
*
28710985 TCAAC TCAAC TCAAC TCAAC TCAAT TCAAC TCAA
1 TCAAC TCAAC TCAAC TCAAC TCAAC TCAAC TCAA
28711019 TTCGTCCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (5 bp):
TCAAC
Found at i:28711698 original size:30 final size:30
Alignment explanation
Indices: 28711657--28711730 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
28711647 ATTTAAACCA
* * *
28711657 AAATTAGAATTTCACGTGTATAATTACAC-T
1 AAATTAAAATTT-ACGTATACAATTACACAT
*
28711687 AAATTAAAATTTATGTATACAATTACACATT
1 AAATTAAAATTTACGTATACAATTACACA-T
*
28711718 AAATAAAAATTTA
1 AAATTAAAATTTA
28711731 TATATAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 13 0.35
30 11 0.30
31 13 0.35
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.36
Consensus pattern (30 bp):
AAATTAAAATTTACGTATACAATTACACAT
Found at i:28711727 original size:31 final size:29
Alignment explanation
Indices: 28711678--28711736 Score: 82
Period size: 31 Copynumber: 2.0 Consensus size: 29
28711668 TCACGTGTAT
* *
28711678 AATTACACTAAATTAAAATTTATGTATAC
1 AATTACACTAAATAAAAATTTATATATAC
28711707 AATTACACATTAAATAAAAATTTATATATA
1 AATTACAC--TAAATAAAAATTTATATATA
28711737 ATTTTGAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
31 18 0.69
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.37
Consensus pattern (29 bp):
AATTACACTAAATAAAAATTTATATATAC
Found at i:28711734 original size:29 final size:28
Alignment explanation
Indices: 28711678--28711739 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 28
28711668 TCACGTGTAT
*
28711678 AATTACACTAAATTAAAATTTATGTATAC
1 AATTACACTAAATAAAAATTTA-GTATAC
*
28711707 AATTACACATTAAATAAAAATTTA-TATAT
1 AATTACAC--TAAATAAAAATTTAGTATAC
28711736 AATT
1 AATT
28711740 TTGAGATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.55
31 13 0.45
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.39
Consensus pattern (28 bp):
AATTACACTAAATAAAAATTTAGTATAC
Found at i:28712700 original size:11 final size:12
Alignment explanation
Indices: 28712675--28712701 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
28712665 CATTTCAACT
28712675 AAAAGAAAACAA
1 AAAAGAAAACAA
28712687 AAAAGAAAACAA
1 AAAAGAAAACAA
28712699 AAA
1 AAA
28712702 TGCATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.07, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAGAAAACAA
Found at i:28715959 original size:45 final size:45
Alignment explanation
Indices: 28715886--28715988 Score: 134
Period size: 45 Copynumber: 2.3 Consensus size: 45
28715876 TAGGTTGCAT
* *
28715886 GACAACGATGACTCACTTATATCAAATTGCTACCTTAGGATGCCC
1 GACAACGATAACTCACTTATATCAAATTGCTACCTCAGGATGCCC
** * * * *
28715931 GGTAACGATAACTCACTTATGTCGAATTGCTACCTCGGGTTGCCC
1 GACAACGATAACTCACTTATATCAAATTGCTACCTCAGGATGCCC
28715976 GACAACGATAACT
1 GACAACGATAACT
28715989 TATATGTATA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (45 bp):
GACAACGATAACTCACTTATATCAAATTGCTACCTCAGGATGCCC
Found at i:28728565 original size:461 final size:459
Alignment explanation
Indices: 28727491--28728634 Score: 1515
Period size: 459 Copynumber: 2.5 Consensus size: 459
28727481 CGTCATATGT
* * ** * *
28727491 GAGTAGGTCATCATCTTCTCGTTCGGAAAAGTTAGTGTTTAAAACACTTCCGCCAGATTAGAAGA
1 GAGTGGGTCATCACCTTCTCGTTCAAAAAATTTAGTGTTTAAAACACTTCCGCCAAATTAGAAGA
* * * *
28727556 ACTTAGGCCTACAATAGACCCTCCAACTATGACAAAGCACCCTATGTTGCTAATCATTTGTAGGT
66 ACTCAGGCCTACGATAGACCCTCCCACTATGACAAAGCACCCTATGTTGCTAATCATTTGCAGGT
* * * * *
28727621 CTATTATTAGGAGTTGGTTCTGAAACCGTTTCTATAGGGCTTTGTGTATTTCTCGAAAGTTCCTC
131 CTACTATTAGGAGTTGGTTCTGGAACCATTTCTATAGGTCTTTGTGTATTTCCCGAAAGTTCCTC
* * *
28727686 GAGTACTTCTTTAGT-TCGAGGTTTGAAGTGATTCATGTAACCTTTTTCACGAAAAGTAGCATGA
196 GAGTACTTCTTTACTCT-GAGGTTTGAAGTAATTCATGTAACCTTTTTCAAGAAAAGTAGCATGA
* **
28727750 GTTAACACTATCACTGTTGGCTTTTTCGGGTTATAAAACAAACCACCATTTGTTCCATTTCAATA
260 GCTAACACTATCACAATTGGCTTTTTCGGGTTATAAAACAAACCACCATTTGTTCCATTTCAATA
* * *
28727815 TCCTACAAACATGCACAATTTTGTCCGTGAGTCCAACTTCCTCGACTCTATCCAATACGTGGGTC
325 TCCTACAAACACGCACAATTCTGTCCGTGAGTCCAACTTCCTCGACTCTATCCAATACATGGGTC
* * *
28727880 GAGCATCCCTAAATCCTTAAATGGTTTAGATTCGACTTTCTACCATGCCATAATTTACTTCATCA
390 GAGCATCCCTAAATCCTTAAATGGTTTAGATTCAACTTCCTACCATGCCATAATTCACTTCATCA
28727945 TATAC
455 TATAC
* * * * *
28727950 GAGTGGGTCATCATCTTCTCGTTCGAGAAATTTAGTGTTCAAAACACCTCCGCCAAATTAGAAGA
1 GAGTGGGTCATCACCTTCTCGTTCAAAAAATTTAGTGTTTAAAACACTTCCGCCAAATTAGAAGA
* * * ** *
28728015 ACTCAGGCCTAGGATAGACCCTCCCACTATGATAAAACACCCTATGTTATTTATCATTTGCAGGT
66 ACTCAGGCCTACGATAGACCCTCCCACTATGACAAAGCACCCTATGTTGCTAATCATTTGCAGGT
* *
28728080 CTACTATTAGGAGTTAGTTCTGGAACCACTTCTATAGGTCTTTGTGTATTTCCCGAAAGTTCCTC
131 CTACTATTAGGAGTTGGTTCTGGAACCATTTCTATAGGTCTTTGTGTATTTCCCGAAAGTTCCTC
* * * *
28728145 GAGTACTTTTTTACTCTTAGGTTTGAAGTAATTCATGTAA-CTTTCTTCAAGGAAAGTAGTATGA
196 GAGTACTTCTTTACTCTGAGGTTTGAAGTAATTCATGTAACCTTT-TTCAAGAAAAGTAGCATGA
* ** * * **
28728209 GCTGACACTATCACAATTTTCTTTTTCGGGTTATAAAACAAACCACCCTTTGTTCCTTTTTGATA
260 GCTAACACTATCACAATTGGCTTTTTCGGGTTATAAAACAAACCACCATTTGTTCCATTTCAATA
* * * *
28728274 TCCTACAAACACGCGCAATTCTGTCTGTGAGTCCAACTTCCTCGCATCTTTATTCAATACATGGG
325 TCCTACAAACACGCACAATTCTGTCCGTGAGTCCAACTTCCTCG-A-CTCTATCCAATACATGGG
* *
28728339 TCGGGCAT-CCTCAAATCCTTAAATGGTTTAGATTCAACTTCCTACCATGCCAT-ATTCCGCTTC
388 TCGAGCATCCCT-AAATCCTTAAATGGTTTAGATTCAACTTCCTACCATGCCATAATT-CACTTC
*
28728402 ATCATATAT
451 ATCATATAC
** * * * * *
28728411 GAGTGGGTTGTTACCTTGTCGTTCAAAAAATTTAGCGTTTAAAACACTTCCGCCATATTGGAAGA
1 GAGTGGGTCATCACCTTCTCGTTCAAAAAATTTAGTGTTTAAAACACTTCCGCCAAATTAGAAGA
* * * *
28728476 ACTCAAGCCTACGATAG-CCTTTCCCACTACGACAAAGCACCCTATGTTGCTGATCATTTGCAGG
66 ACTCAGGCCTACGATAGACC-CTCCCACTATGACAAAGCACCCTATGTTGCTAATCATTTGCAGG
* * * *
28728540 TTTACTATTAGGAGTTGGATCTGGAACCATTTTTTATAGGTCTTTATGTATTTCCCGAAAGTTCC
130 TCTACTATTAGGAGTTGGTTCTGGAACCA-TTTCTATAGGTCTTTGTGTATTTCCCGAAAGTTCC
*
28728605 TCGAGTACTTCTTTACTCCGAGGTTTGAAG
194 TCGAGTACTTCTTTACTCTGAGGTTTGAAG
28728635 AACTCAAAAT
Statistics
Matches: 593, Mismatches: 84, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
458 4 0.01
459 316 0.53
460 10 0.02
461 204 0.34
462 59 0.10
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (459 bp):
GAGTGGGTCATCACCTTCTCGTTCAAAAAATTTAGTGTTTAAAACACTTCCGCCAAATTAGAAGA
ACTCAGGCCTACGATAGACCCTCCCACTATGACAAAGCACCCTATGTTGCTAATCATTTGCAGGT
CTACTATTAGGAGTTGGTTCTGGAACCATTTCTATAGGTCTTTGTGTATTTCCCGAAAGTTCCTC
GAGTACTTCTTTACTCTGAGGTTTGAAGTAATTCATGTAACCTTTTTCAAGAAAAGTAGCATGAG
CTAACACTATCACAATTGGCTTTTTCGGGTTATAAAACAAACCACCATTTGTTCCATTTCAATAT
CCTACAAACACGCACAATTCTGTCCGTGAGTCCAACTTCCTCGACTCTATCCAATACATGGGTCG
AGCATCCCTAAATCCTTAAATGGTTTAGATTCAACTTCCTACCATGCCATAATTCACTTCATCAT
ATAC
Found at i:28730718 original size:19 final size:17
Alignment explanation
Indices: 28730688--28730722 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
28730678 TTTATCATAA
28730688 TTTTTTTCTTTTTCTTC
1 TTTTTTTCTTTTTCTTC
28730705 TTTTTTCTCATTTTTCTT
1 TTTTTT-TC-TTTTTCTT
28730723 TTCAAGTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTTTCTTTTTCTTC
Found at i:28739908 original size:21 final size:21
Alignment explanation
Indices: 28739875--28739915 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
28739865 AAAAATAAAA
28739875 AATTTAACGGTTAAACACTTG
1 AATTTAACGGTTAAACACTTG
*
28739896 AATTTGAAC-GTTACACACTT
1 AATTT-AACGGTTAAACACTT
28739916 ACCTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (21 bp):
AATTTAACGGTTAAACACTTG
Found at i:28746483 original size:18 final size:18
Alignment explanation
Indices: 28746460--28746503 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
28746450 GCAACCTGAC
*
28746460 CAGATGTGATCACAGAAT
1 CAGATGTAATCACAGAAT
* * *
28746478 CAGATGCAATCACATACT
1 CAGATGTAATCACAGAAT
28746496 CAGATGTA
1 CAGATGTA
28746504 GCCACAGGTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (18 bp):
CAGATGTAATCACAGAAT
Found at i:28751158 original size:13 final size:13
Alignment explanation
Indices: 28751137--28751177 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
28751127 AAGAAAACTC
*
28751137 CTTCCCTCCTTTG
1 CTTCACTCCTTTG
28751150 CTTCACTCCTTTG
1 CTTCACTCCTTTG
*
28751163 CTTCGCTCCTTTG
1 CTTCACTCCTTTG
28751176 CT
1 CT
28751178 GTTAGCTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.02, C:0.41, G:0.10, T:0.46
Consensus pattern (13 bp):
CTTCACTCCTTTG
Found at i:28751807 original size:26 final size:23
Alignment explanation
Indices: 28751778--28751825 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
28751768 TAATTCATGT
28751778 TTAATTATTAAATATAATTTCATGCC
1 TTAA-TATTAAAT-TAATTT-ATGCC
*
28751804 TTAATATTTAATTAATTTATGC
1 TTAATATTAAATTAATTTATGC
28751826 ATGGCCCACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 6 0.29
25 7 0.33
26 4 0.19
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (23 bp):
TTAATATTAAATTAATTTATGCC
Found at i:28755705 original size:20 final size:19
Alignment explanation
Indices: 28755664--28755706 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
28755654 TTGTTTGATG
* *
28755664 TTTATTTTTGTTTTTAAAC
1 TTTATTTTTATTTCTAAAC
*
28755683 TTTATTTTTATTATCTAATC
1 TTTATTTTTATT-TCTAAAC
28755703 TTTA
1 TTTA
28755707 GTTGTTGCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTATTTTTATTTCTAAAC
Found at i:28759786 original size:21 final size:20
Alignment explanation
Indices: 28759737--28759786 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
28759727 TAGAACAAAT
*
28759737 AAAATGCAGGGACAATAAAA
1 AAAATGCAAGGACAATAAAA
*
28759757 AAAATTGCAATGACAATTAAAA
1 AAAA-TGCAAGGACAA-TAAAA
28759779 AAAATGCA
1 AAAATGCA
28759787 TGCAACTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.15
21 13 0.50
22 9 0.35
ACGTcount: A:0.60, C:0.10, G:0.14, T:0.16
Consensus pattern (20 bp):
AAAATGCAAGGACAATAAAA
Found at i:28763308 original size:15 final size:15
Alignment explanation
Indices: 28763288--28763317 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
28763278 ATTTTTGTTG
28763288 ACTCTTTTTCAATTT
1 ACTCTTTTTCAATTT
28763303 ACTCTTTTTCAATTT
1 ACTCTTTTTCAATTT
28763318 TCTTTTAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (15 bp):
ACTCTTTTTCAATTT
Found at i:28763323 original size:13 final size:14
Alignment explanation
Indices: 28763290--28763323 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
28763280 TTTTGTTGAC
28763290 TCTTTTTCAATTTA
1 TCTTTTTCAATTTA
28763304 CTCTTTTTCAATTT-
1 -TCTTTTTCAATTTA
28763318 TCTTTT
1 TCTTTT
28763324 AGGTGTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TCTTTTTCAATTTA
Found at i:28774621 original size:17 final size:15
Alignment explanation
Indices: 28774599--28774644 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 15
28774589 TACATTTATG
28774599 TTTATTTCTTTTCTTA
1 TTTATTTCTTTT-TTA
28774615 CTTTATTTCTTCTTTTA
1 -TTTATTTCTT-TTTTA
*
28774632 TCTATTTCTTTTT
1 TTTATTTCTTTTT
28774645 AAATTCTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 3 0.11
16 9 0.33
17 13 0.48
18 2 0.07
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTTCTTTTTTA
Found at i:28777335 original size:18 final size:18
Alignment explanation
Indices: 28777312--28777352 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
28777302 AGTTAAATAA
28777312 AAAAAGAGAAAAAG-AAAG
1 AAAAAG-GAAAAAGAAAAG
*
28777330 AAAAAGGGAAAAGAAAAG
1 AAAAAGGAAAAAGAAAAG
28777348 AAAAA
1 AAAAA
28777353 AAAATATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (18 bp):
AAAAAGGAAAAAGAAAAG
Found at i:28780216 original size:12 final size:12
Alignment explanation
Indices: 28780199--28780255 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
28780189 ATAACATCCG
28780199 TGGAAATTCTTA
1 TGGAAATTCTTA
28780211 TGGAAATTCTTA
1 TGGAAATTCTTA
* * *
28780223 -CGATATTCAGATA
1 TGGAAATTC--TTA
28780236 TGGAAATTCTTA
1 TGGAAATTCTTA
*
28780248 TGGTAATT
1 TGGAAATT
28780256 TTTGACAAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
11 6 0.17
12 21 0.60
13 2 0.06
14 6 0.17
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (12 bp):
TGGAAATTCTTA
Found at i:28786828 original size:34 final size:34
Alignment explanation
Indices: 28786790--28786855 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
28786780 CTGTAATGTA
* * *
28786790 ATTGTCACCACATTTCCTTTGTCATTGCATTTTT
1 ATTGTCACCACATCTACATTGTCATTGCATTTTT
* *
28786824 ATTGTCACTACATCTACATTGTCATTGTATTT
1 ATTGTCACCACATCTACATTGTCATTGCATTT
28786856 CCATATATCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (34 bp):
ATTGTCACCACATCTACATTGTCATTGCATTTTT
Found at i:28787452 original size:19 final size:17
Alignment explanation
Indices: 28787416--28787457 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
28787406 TCAATCACAT
28787416 AAAAAAAAGAGAAAAAG
1 AAAAAAAAGAGAAAAAG
*
28787433 AAAAAAAAG-GGAAAAG
1 AAAAAAAAGAGAAAAAG
28787449 AAGAAAAAA
1 AA-AAAAAA
28787458 TGTATATGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAGAAAAAG
Found at i:28793814 original size:18 final size:18
Alignment explanation
Indices: 28793785--28793828 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
28793775 AAATGTACTA
28793785 ACAAAT-AAAATGCAATG
1 ACAAATAAAAATGCAATG
28793802 ACAAATAAAAATGCAATG
1 ACAAATAAAAATGCAATG
*
28793820 ACAACTAAA
1 ACAAATAAA
28793829 TGCTATGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.61, C:0.14, G:0.09, T:0.16
Consensus pattern (18 bp):
ACAAATAAAAATGCAATG
Found at i:28797476 original size:92 final size:92
Alignment explanation
Indices: 28797319--28797501 Score: 366
Period size: 92 Copynumber: 2.0 Consensus size: 92
28797309 AATGCATACG
28797319 TTGAATAGGTATGGGTCATTCCAATGATACTGCGCAGCGTCTCTAATGAATTTGATCTTCTTGTC
1 TTGAATAGGTATGGGTCATTCCAATGATACTGCGCAGCGTCTCTAATGAATTTGATCTTCTTGTC
28797384 ACCTGTTGCACTTAAATGTAGCTTACA
66 ACCTGTTGCACTTAAATGTAGCTTACA
28797411 TTGAATAGGTATGGGTCATTCCAATGATACTGCGCAGCGTCTCTAATGAATTTGATCTTCTTGTC
1 TTGAATAGGTATGGGTCATTCCAATGATACTGCGCAGCGTCTCTAATGAATTTGATCTTCTTGTC
28797476 ACCTGTTGCACTTAAATGTAGCTTAC
66 ACCTGTTGCACTTAAATGTAGCTTAC
28797502 CATACACTAA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (92 bp):
TTGAATAGGTATGGGTCATTCCAATGATACTGCGCAGCGTCTCTAATGAATTTGATCTTCTTGTC
ACCTGTTGCACTTAAATGTAGCTTACA
Found at i:28807485 original size:15 final size:16
Alignment explanation
Indices: 28807453--28807485 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
28807443 TCAAGAAGAA
*
28807453 ATTTTGAATTCATTTG
1 ATTTTGAATTCATATG
28807469 ATTTTGAA-TCATATG
1 ATTTTGAATTCATATG
28807484 AT
1 AT
28807486 ACTTGTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (16 bp):
ATTTTGAATTCATATG
Found at i:28808817 original size:13 final size:13
Alignment explanation
Indices: 28808799--28808824 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28808789 CTAGAGAATT
28808799 CTGGTAAAGTATG
1 CTGGTAAAGTATG
28808812 CTGGTAAAGTATG
1 CTGGTAAAGTATG
28808825 AAAGCTTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
CTGGTAAAGTATG
Found at i:28822968 original size:90 final size:89
Alignment explanation
Indices: 28822802--28822976 Score: 269
Period size: 90 Copynumber: 1.9 Consensus size: 89
28822792 AACGAGATAA
* *
28822802 AAAAAGAATTTGATATATTCCTTATCAGGTAAGGAGATAGAATTTAATTATTTAAAAGAGTTTTA
1 AAAAAGAATTTGATATATTCCTTATCAGATAAGGAAATAGAATTTAATTATTTAAAAGAGTTTTA
28822867 GATAAATAATAATTAAATTCAAAAT
66 GAT-AATAATAATTAAATTCAAAAT
* *
28822892 AAAAAGGATTTGATATATTCCTTATCAGATAAGGAAATAGATTTTAATTATTATTTAAAAGAGTT
1 AAAAAGAATTTGATATATTCCTTATCAGATAAGGAAATAGAATTT-A--ATTATTTAAAAGAGTT
28822957 TTAGATAAATAATAATTAAA
63 TTAGAT-AATAATAATTAAA
28822977 ATAGAATTTA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
90 41 0.53
91 1 0.01
93 36 0.46
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (89 bp):
AAAAAGAATTTGATATATTCCTTATCAGATAAGGAAATAGAATTTAATTATTTAAAAGAGTTTTA
GATAATAATAATTAAATTCAAAAT
Found at i:28823011 original size:52 final size:50
Alignment explanation
Indices: 28822926--28823074 Score: 198
Period size: 52 Copynumber: 3.0 Consensus size: 50
28822916 TCAGATAAGG
*
28822926 AAATAG-ATTTTAATTATTATTTAAAAGAGTTTTAGATAAATAATAATTA
1 AAATAGAATTTTAATTATTATTTAAAAGACTTTTAGATAAATAATAATTA
* * * *
28822975 AAATAGAATTTAATTATTATTATTTAAAAGATTTTTAAATGAAA-GATAATT-
1 AAATAGAATTT--TAATTATTATTTAAAAGACTTTTAGAT-AAATAATAATTA
28823026 AAATAGAATTTTAATTATTATTTAAAA-ACTTTTAGATAAATAATAATTA
1 AAATAGAATTTTAATTATTATTTAAAAGACTTTTAGATAAATAATAATTA
28823075 TATTGTTATT
Statistics
Matches: 86, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
47 3 0.03
48 14 0.16
49 21 0.24
50 4 0.05
51 11 0.13
52 30 0.35
53 3 0.03
ACGTcount: A:0.50, C:0.01, G:0.07, T:0.43
Consensus pattern (50 bp):
AAATAGAATTTTAATTATTATTTAAAAGACTTTTAGATAAATAATAATTA
Found at i:28827519 original size:17 final size:17
Alignment explanation
Indices: 28827497--28827535 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
28827487 TAATTTTCCC
28827497 TGCATTATTAATGTCAT
1 TGCATTATTAATGTCAT
* * *
28827514 TGCATTTTTATTGTCGT
1 TGCATTATTAATGTCAT
28827531 TGCAT
1 TGCAT
28827536 CTACAATGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.13, G:0.15, T:0.51
Consensus pattern (17 bp):
TGCATTATTAATGTCAT
Found at i:28828127 original size:14 final size:13
Alignment explanation
Indices: 28828103--28828159 Score: 59
Period size: 12 Copynumber: 4.5 Consensus size: 13
28828093 TCAGTCACTT
28828103 GAAAAAGGAAAATGA
1 GAAAAA-GAAAA-GA
28828118 GAAAAAGAAAAGA
1 GAAAAAGAAAAGA
28828131 G-AAAAGAGAAA-A
1 GAAAAAGA-AAAGA
28828143 G-AAAAGAAAAGA
1 GAAAAAGAAAAGA
28828155 -AAAAA
1 GAAAAA
28828160 TGTTTGCTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
11 3 0.08
12 19 0.49
13 6 0.15
14 5 0.13
15 6 0.15
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (13 bp):
GAAAAAGAAAAGA
Found at i:28828130 original size:5 final size:5
Alignment explanation
Indices: 28828120--28828157 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
28828110 GAAAATGAGA
* *
28828120 AAAAG AAAAG AGAA- AAGAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
28828158 AATGTTTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
4 2 0.07
5 26 0.93
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:28828133 original size:7 final size:7
Alignment explanation
Indices: 28828105--28828144 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
28828095 AGTCACTTGA
28828105 AAAAG-G
1 AAAAGAG
28828111 AAAATGAG
1 AAAA-GAG
28828119 AAAA-AG
1 AAAAGAG
28828125 AAAAGAG
1 AAAAGAG
28828132 AAAAGAG
1 AAAAGAG
28828139 AAAAGA
1 AAAAGA
28828145 AAAGAAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 10 0.32
7 16 0.52
8 5 0.16
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (7 bp):
AAAAGAG
Found at i:28828139 original size:20 final size:20
Alignment explanation
Indices: 28828105--28828149 Score: 67
Period size: 19 Copynumber: 2.3 Consensus size: 20
28828095 AGTCACTTGA
28828105 AAAAG-GAAAATGAGAAAAAG
1 AAAAGAGAAAATGAG-AAAAG
28828125 AAAAGAGAAAA-GAGAAAAG
1 AAAAGAGAAAATGAGAAAAG
28828144 AAAAGA
1 AAAAGA
28828150 AAAGAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.46
20 8 0.33
21 5 0.21
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02
Consensus pattern (20 bp):
AAAAGAGAAAATGAGAAAAG
Found at i:28830067 original size:26 final size:26
Alignment explanation
Indices: 28830028--28830080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28830018 TTCGTGGGAT
28830028 AGATATCCGATAGAATTATTCTATCA
1 AGATATCCGATAGAATTATTCTATCA
* *
28830054 AGATATCCGGTAGAATTGTTCTATCA
1 AGATATCCGATAGAATTATTCTATCA
28830080 A
1 A
28830081 CTATACTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (26 bp):
AGATATCCGATAGAATTATTCTATCA
Found at i:28840681 original size:48 final size:48
Alignment explanation
Indices: 28840612--28840732 Score: 183
Period size: 48 Copynumber: 2.6 Consensus size: 48
28840602 TATTTATGCT
* *
28840612 TCATTAAGT-TTTT-TTTTTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
*
28840658 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTACA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
* *
28840706 TTATTAATTGTTTTGTTTGTTAAATGC
1 TCATTAAGTGTTTTGTTTGTTAAATGC
28840733 CTTACATTAA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
46 9 0.13
47 4 0.06
48 55 0.81
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.54
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
Found at i:28841274 original size:80 final size:79
Alignment explanation
Indices: 28841168--28841324 Score: 242
Period size: 80 Copynumber: 2.0 Consensus size: 79
28841158 TCATTAAGGA
* * * *
28841168 GAAATGCCATGCCTTTTCAGCTACATCAGATCCTAATGAAGAGACATGACTCATTGGTTTTCCTA
1 GAAATGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTA
28841233 CAAAAGTTAAAAAC
66 CAAAAGTTAAAAAC
* *
28841247 GAAATTGCCTTGCCTTTTTAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
1 GAAA-TGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCT
*
28841312 ACAAGAGTTAAAA
65 ACAAAAGTTAAAA
28841325 TGAAATTAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 4 0.06
80 66 0.94
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.29
Consensus pattern (79 bp):
GAAATGCCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTA
CAAAAGTTAAAAAC
Found at i:28847336 original size:51 final size:51
Alignment explanation
Indices: 28847278--28847397 Score: 165
Period size: 48 Copynumber: 2.4 Consensus size: 51
28847268 TATTTATGCT
*
28847278 TCATTAAGTGTTTTTTTTTTTGCTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTGTTTTTTTGTTTGCTAAATGCATCTTTGTTTAATAATCTGCA
* *
28847329 TCATTAAGTG---TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAAGTGTTTTTTTGTTTGCTAAATGCATCTTTGTTTAATAATCTGCA
* *
28847377 TTATTAACTGTTTTGTTTGTT
1 TCATTAAGTGTTTT-TTTGTT
28847398 AAATGCTTTG
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
48 43 0.72
51 11 0.18
52 6 0.10
ACGTcount: A:0.22, C:0.10, G:0.14, T:0.54
Consensus pattern (51 bp):
TCATTAAGTGTTTTTTTGTTTGCTAAATGCATCTTTGTTTAATAATCTGCA
Found at i:28847362 original size:48 final size:48
Alignment explanation
Indices: 28847291--28847403 Score: 181
Period size: 48 Copynumber: 2.4 Consensus size: 48
28847281 TTAAGTGTTT
* * *
28847291 TTTTTTTTGCTAAATGCATCTTTGTTTAATAATCTGCATCATTAAGTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCATTAACTG
* *
28847339 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCATTAACTG
28847387 TTTTGTTTGTTAAATGC
1 TTTTGTTTGTTAAATGC
28847404 TTTGTTAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.23, C:0.11, G:0.14, T:0.52
Consensus pattern (48 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCATTAACTG
Found at i:28847957 original size:80 final size:79
Alignment explanation
Indices: 28847862--28848016 Score: 256
Period size: 80 Copynumber: 1.9 Consensus size: 79
28847852 GAGAAAGCCA
* * * *
28847862 TGCCTTTTCAGCTACATTAGATCCTAATGAAGAGATATGACTCATTAGCTTTCCTACAAGAGTTA
1 TGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTT-
28847927 AAAATGAAATTGCCC
65 AAAATGAAATTGCCC
*
28847942 TGCCTTTTTAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTTA
1 TGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTTA
28848007 AAATGAAATT
66 AAATGAAATT
28848017 AGTGCTTGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 11 0.16
80 59 0.84
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (79 bp):
TGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTTA
AAATGAAATTGCCC
Found at i:28862297 original size:46 final size:47
Alignment explanation
Indices: 28862247--28862336 Score: 137
Period size: 46 Copynumber: 1.9 Consensus size: 47
28862237 ACCACTTAAA
*
28862247 AATATTATGGACAAGCCACCACTTTTGTA-ATAAAATGCCACTTTGT
1 AATATTATGGACAAGCCACCACTTTTGCAGATAAAATGCCACTTTGT
* * *
28862293 AATATTGTGGAGAAGCCACCACTTTTGCAGATAAATTGCCACTT
1 AATATTATGGACAAGCCACCACTTTTGCAGATAAAATGCCACTT
28862337 CTTCCACCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 26 0.67
47 13 0.33
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (47 bp):
AATATTATGGACAAGCCACCACTTTTGCAGATAAAATGCCACTTTGT
Found at i:28867378 original size:5 final size:6
Alignment explanation
Indices: 28867364--28867406 Score: 59
Period size: 6 Copynumber: 6.7 Consensus size: 6
28867354 CGACCTCTCC
28867364 TTTTCT TTTTCT TTTTCT TTTTCAGT TTTTCT TTTCTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTC--T TTTTCT TTT-TCT TTTT
28867407 TTGGTGAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 22 0.65
7 6 0.18
8 6 0.18
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:28872248 original size:11 final size:12
Alignment explanation
Indices: 28872227--28872288 Score: 56
Period size: 11 Copynumber: 5.2 Consensus size: 12
28872217 ACAAACAAAC
*
28872227 AAATAATAAAAT
1 AAATAAAAAAAT
28872239 -AATAAAAAAAT
1 AAATAAAAAAAT
*
28872250 AAAT-AAAAGAT
1 AAATAAAAAAAT
**
28872261 AAATACGTAAAAT
1 AAATA-AAAAAAT
*
28872274 ATATAAAAAAAT
1 AAATAAAAAAAT
28872286 AAA
1 AAA
28872289 AGATGAAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
11 20 0.53
12 10 0.26
13 8 0.21
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (12 bp):
AAATAAAAAAAT
Found at i:28873452 original size:13 final size:12
Alignment explanation
Indices: 28873429--28873477 Score: 59
Period size: 11 Copynumber: 4.2 Consensus size: 12
28873419 AAAAATTACA
28873429 TTTTT-TTTTGC
1 TTTTTCTTTTGC
28873440 TTTTTGCTTTTGC
1 TTTTT-CTTTTGC
28873453 TTTTTCTTTT-C
1 TTTTTCTTTTGC
*
28873464 TCTTTCTTTT-C
1 TTTTTCTTTTGC
28873475 TTT
1 TTT
28873478 GTTTTCTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 18 0.53
12 5 0.15
13 11 0.32
ACGTcount: A:0.00, C:0.16, G:0.06, T:0.78
Consensus pattern (12 bp):
TTTTTCTTTTGC
Found at i:28875355 original size:9 final size:9
Alignment explanation
Indices: 28875294--28875373 Score: 58
Period size: 9 Copynumber: 8.8 Consensus size: 9
28875284 TTTTTTCAAT
28875294 ATTTTTA-A
1 ATTTTTATA
*
28875302 ATTTTCATA
1 ATTTTTATA
*
28875311 GTCTTTTATA
1 AT-TTTTATA
*
28875321 GTTTTTAAATA
1 ATTTTT--ATA
*
28875332 ATTATTA-A
1 ATTTTTATA
28875340 TATTTTTATA
1 -ATTTTTATA
28875350 ATTTTTA-A
1 ATTTTTATA
28875358 ATTTTTATA
1 ATTTTTATA
*
28875367 GTTTTTA
1 ATTTTTA
28875374 ACTTATCTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
8 15 0.26
9 27 0.47
10 9 0.16
11 7 0.12
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.61
Consensus pattern (9 bp):
ATTTTTATA
Found at i:28875372 original size:18 final size:17
Alignment explanation
Indices: 28875294--28875374 Score: 72
Period size: 17 Copynumber: 4.5 Consensus size: 17
28875284 TTTTTTCAAT
*
28875294 ATTTTTAAATTTTCATA
1 ATTTTTAAATTTTTATA
* *
28875311 GTCTTTTATAGTTTTTAAATA
1 AT-TTTTA-AATTTTT--ATA
*
28875332 ATTATTAATATTTTTATA
1 ATTTTTAA-ATTTTTATA
28875350 ATTTTTAAATTTTTATA
1 ATTTTTAAATTTTTATA
*
28875367 GTTTTTAA
1 ATTTTTAA
28875375 CTTATCTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
17 17 0.33
18 15 0.29
19 6 0.12
20 9 0.18
21 4 0.08
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (17 bp):
ATTTTTAAATTTTTATA
Found at i:28877715 original size:20 final size:19
Alignment explanation
Indices: 28877690--28877754 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
28877680 TTAAAATGTT
*
28877690 TAAAAAATCATAATAACTTA
1 TAAAAAATCATAA-AAATTA
*
28877710 TAAAAAATCAAAAAAATTA
1 TAAAAAATCATAAAAATTA
* * *
28877729 TCAAAAATTATAAAAAATA
1 TAAAAAATCATAAAAATTA
28877748 TAAAAAA
1 TAAAAAA
28877755 ATATTAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 26 0.68
20 12 0.32
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (19 bp):
TAAAAAATCATAAAAATTA
Found at i:28877723 original size:29 final size:30
Alignment explanation
Indices: 28877691--28877756 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
28877681 TAAAATGTTT
*
28877691 AAAAAATCAT-AATAACTTATAAAAAAT-CA
1 AAAAAATCATCAA-AAATTATAAAAAATACA
* *
28877720 AAAAAATTATCAAAAATTATAAAAAATATA
1 AAAAAATCATCAAAAATTATAAAAAATACA
28877750 AAAAAAT
1 AAAAAAT
28877757 ATTAAATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 22 0.69
30 10 0.31
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (30 bp):
AAAAAATCATCAAAAATTATAAAAAATACA
Found at i:28877734 original size:9 final size:9
Alignment explanation
Indices: 28877692--28877800 Score: 53
Period size: 10 Copynumber: 11.8 Consensus size: 9
28877682 AAAATGTTTA
*
28877692 AAAAATCAT
1 AAAAATTAT
*
28877701 AATAACTTAT
1 AA-AAATTAT
* *
28877711 AAAAAATCAA
1 -AAAAATTAT
28877721 AAAAATTAT
1 AAAAATTAT
28877730 CAAAAATTAT
1 -AAAAATTAT
*
28877740 AAAAAATAT
1 AAAAATTAT
*
28877749 AAAAAAATATT
1 -AAAAATTA-T
*
28877760 AAATATT-T
1 AAAAATTAT
*
28877768 GAAAA-TAT
1 AAAAATTAT
28877776 AAAAATTGAT
1 AAAAATT-AT
* *
28877786 ATAAACT-T
1 AAAAATTAT
28877794 AAAAATT
1 AAAAATT
28877801 CTAATTAGTT
Statistics
Matches: 75, Mismatches: 17, Indels: 17
0.69 0.16 0.16
Matches are distributed among these distances:
7 1 0.01
8 15 0.20
9 18 0.24
10 38 0.51
11 3 0.04
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Done.