Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 107 of 141
Found at i:34749215 original size:49 final size:50
Alignment explanation
Indices: 34749074--34749219 Score: 150
Period size: 50 Copynumber: 2.9 Consensus size: 50
34749064 TCTTGTTTCC
* * * *
34749074 CTGACATTGTAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCT
1 CTGACATTGTAATTAAAAAGATTGAAGCCATAACGGTGAATCTTACTCCA
* * * * ** * * ** *
34749124 CTGGCAGTGCAGTGGAACAGATTGAAGCTATAACGGCAAATCTTGCTCCA
1 CTGACATTGTAATTAAAAAGATTGAAGCCATAACGGTGAATCTTACTCCA
34749174 C-GACATTGTAATTAAAAAGATTGAAGCCATAACGGTGAATCTTACT
1 CTGACATTGTAATTAAAAAGATTGAAGCCATAACGGTGAATCTTACT
34749220 TCCCTGGCGG
Statistics
Matches: 70, Mismatches: 26, Indels: 1
0.72 0.27 0.01
Matches are distributed among these distances:
49 34 0.49
50 36 0.51
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (50 bp):
CTGACATTGTAATTAAAAAGATTGAAGCCATAACGGTGAATCTTACTCCA
Found at i:34750710 original size:50 final size:50
Alignment explanation
Indices: 34750637--34750811 Score: 165
Period size: 50 Copynumber: 3.5 Consensus size: 50
34750627 GCAGTCGAGC
* *
34750637 AGATCGAAGCTACAACGGTGAATCTGGCTCCCTCGACATTGAAATTAAAA
1 AGATCGAAGCCACAACGGCGAATCTGGCTCCCTCGACATTGAAATTAAAA
* * ** * * * ** **
34750687 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTAG-CGA-TGCAGTCGAGC
1 AGATCGAAGCCACAACGGCGAATCTGGC-TCCCTCGAC-ATTGAAATTAAAA
* *
34750737 AGATCGAAGCTACAACGGTGAATCTGGCTCCCTCGACATTGAAATTAAAA
1 AGATCGAAGCCACAACGGCGAATCTGGCTCCCTCGACATTGAAATTAAAA
* *
34750787 AGATTGAAGCCACAATGGCGAATCT
1 AGATCGAAGCCACAACGGCGAATCT
34750812 TACTTCCCTG
Statistics
Matches: 91, Mismatches: 30, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
49 7 0.08
50 77 0.85
51 7 0.08
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.22
Consensus pattern (50 bp):
AGATCGAAGCCACAACGGCGAATCTGGCTCCCTCGACATTGAAATTAAAA
Found at i:34751442 original size:50 final size:50
Alignment explanation
Indices: 34751310--34759845 Score: 2885
Period size: 50 Copynumber: 172.0 Consensus size: 50
34751300 NNNNNNNNNN
* * * * ** * * *
34751310 CTGGCGGTGCAGTGGAATAGATTGAAGCTACAAAAGTGAATCTTGCTGCA
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34751360 C-GACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * **
34751409 CTGGCGGTGTAGTGCAGCATATTGAAGCTACAACGATGAATCTGGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34751458 CTCGACATTGCAATTAAAAAGTTTGAAGCCACAACTGTGAATCTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34751509 CTTGCAGTGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34751559 CTGACATTGTAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *** *
34751609 CTGGCGGTGCAGTGGAACAGATTAAAGCTACAACGACAAATCTTGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * ** * * * * * *
34751658 AC-GACATTTTAATTAAAAATATTGAAGCTACAACGGTGAAT-TTGGCTCTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTT-ACT-TCC
* * * * * * *
34751709 C-GACATTGCAATTAAAAAGACTGAAGCCACAACGGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34751758 CTGGCGGTACAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * **
34751808 CCGACATTGCAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34751858 CTCGCGGTGCAGTCG-AACAAATTGAAGCTATAACGGCGAATCTTGCTTCA
1 CTGGCAGTGCAGT-GAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
*** * * * * * *
34751908 C-AATATTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
*** * * * * * * * *
34751957 CTGTTGGTACAGTGGAGCAGATTGAAGCTATAACGGTAAATCCTACCTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34752007 CCGACATTGTAATTAAAAAGATTGAAGCCACAACCGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * * *
34752057 CTGG-TGTTGCAGTGGGACAGATTGAAGCTACAACGTTGAATCTTATTTCC
1 CTGGCAG-TGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34752107 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * ** *
34752157 CTCGC-GTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTT-T
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * ** * * * * *
34752205 CTCGACATTTTAATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * *
34752256 CT----G-GC-G-G-AACAGATTGAAGCTACAACGGTAAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * **
34752298 CTGACATTGCTA-TTAAAAATATTGAAGCCACAATGGCGAATCTGGC-TCC
1 CTGGCAGTGC-AGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * *
34752347 AC-GACATTGCAATTAAAAATATTGAA-ACATAATGGTGAATCTTACTTCT
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34752396 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTCTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTT-ACTTCC
* * ** * * * * *
34752447 C-GACATTTTAATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * ** *
34752496 CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGACGAATCTTGCTT-C
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * **
34752545 CTAAACATTGTAATTAAAAAGATTGAAGCTACAACGACGAATCTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34752596 CTGGCAGCGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * **
34752646 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * ** **
34752696 CTAGCGGTGCGGTGGAGCAGATTGAAGCTACAACGGCAAATCTGGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * * * * *
34752745 TCCGACATTTCAATTAAAAATATTAAAGTCACAACAGCGAATCTTTCTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * **
34752796 CTGG-ATGTGCAGTGGAACAGATTGAAGCTACAACGCTGAATCTTGTTTCC
1 CTGGCA-GTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *** *
34752846 CTGACATTGCAATTAAA-ATGATTGAAGCCACAACAACGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACA-GATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * ** *
34752896 CTGGCGGTGCAATGGAGCATATTAAAGCTACAACGATGAATCTGGCTGCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34752946 CCGACATTGCAATTAAAAAGATTGAAGCCACAACTGTGAATCTTGCTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * **
34752996 CTCGTAGTGCAGTG-----GA---AAGCTACAACGGTAAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34753038 CTGACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** ** * * * *
34753088 CTGGTGGTGCAGTGGGACAGATTGAAGCTATAACGTTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * **
34753138 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * ** **
34753188 CTAGCGGTGCGGTGGAGCAGATTGAAGCTACAACGGCAAATCTGGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * *
34753237 TCCGACATTGCAATTAAAAATATTAAAGCCACAACAGTGAATCTTTCTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * **
34753288 CTGG-ATGTGCAGTGGAACAGATTGAAGCTACAACGCTAAATCTTGTTTCC
1 CTGGCA-GTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *** *
34753338 CTGACATTGCAATTAAA-ATGATTGAAGCCACAACAACGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACA-GATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * * ** *
34753388 CTGGCGGTGTAATGGAGCATATTAAAACTACAACGATGAATCTGGCTGCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
*** * * * * *
34753438 AC-AATATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTGCTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34753488 CTCGTAGTGCAGTG-----GA---AAGCTACAACGATAAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34753530 CTGACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** ** * * *
34753580 CTGGTGGTGCAGTGGGACAGATTGAAGCTACAACGTTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34753630 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * ** *
34753680 CTCGC-GTGCAGTGGAGCAAATTGAAGCTACAACGGTGAATCTGGCTCCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34753729 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTTC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * *
34753779 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * **
34753829 CTGACATTGCTA-TTAAAAATATTGAAGCCACAATGGCGAATCTGGC-TCC
1 CTGGCAGTGC-AGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34753878 AC-GACATTGCAATTAAAAAGATTGAA-ACATAATGGTGAATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * ** * * *
34753927 CTGGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGTGAATCTTGTCTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTT-ACTTCC
* * * * * * * *
34753978 C-GACATTGCAATTAAAAAGATTGAAACCACAAC----AA-C-GA-AT--
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * ** *
34754018 C-GGCGGTGCAG-GGAACAAATTGAAGCTACAACGACGAATCTTGCTT-C
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * **
34754065 CTAAACATTGTAATTAAAAAGATTGAAGCTACAACGACGAATCTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34754116 CTGGCAGCGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * **
34754166 CCGACATTACAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * ** **
34754216 CTAGCGGCGCAGTGGAGCAGATTGAAGCTACAACGGCAAATCTGGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * * * *
34754265 TCCGACATTACAATTAAAAATATTAAAGCCACAACAGCGAATCTTTCTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * **
34754316 CTGG-ATGTGTAGTGGAACAGATTGAAGCTACAACGCTGAATCTTGTTTCC
1 CTGGCA-GTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *** *
34754366 CTGACATTGCAATTAAA-ATGATTGAAGCCACAACAACGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACA-GATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * ** *
34754416 CTGGCGGTGCAATGGAGCATATTAAAGCTACAACGATAAATCTGGCTACC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34754466 CTGACATTACAATTAAAAAGATTGAAGCCACAACTGTGAATCTTGCTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * **
34754516 CTCGTAGTGCAGTG-----GA---AAGCTACAACGGTAAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * * *
34754558 CTAACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * ** *
34754608 CTGGTGGTGCAGTGGAACAGATTGAAGCTATAACGGCAAATCTTGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * *
34754657 AC-GACATTGTAATTAAAAAGATTGAAGCCATAATGGTTAACCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * ** * * * * * * **
34754707 CTGGCGGTGTACCGGAGCAGATTAAAGCTACAACTGTTAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34754757 CCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCGTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34754807 CTGGCGGTGCAGTGGAACAAATTAAAGCTACAACAGTGAATCTTACTT-T
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * ***
34754856 CTAAACATTGTAATTAAAAAGATTGAAGCTACAATGACAAATCTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34754907 CTGGCAGCGCAGTGGAACAGATTCAAGCTACAACGGCGCATCTTATTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTA-CTTCC
* * * * * * * * *
34754958 C-GACATTTCAATTAAAAATATTGAAGCCACAACGGTGTATCTTACTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * ** * * * * ** *
34755007 CTGGCGGTGCACTGGAGTAGATCGAAGCTACATCGGCGAATCTGGCTCCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * * * * *
34755057 CCGATAATACAAT-TAACAAGATTGAAGCCACAGCGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAAC-AGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34755107 CTGGCGGTGCAGTGGAACAGGTTGAAGCTACAACAGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * * *
34755157 CCGACATTTCAATTAAAAATATTGAGGCCACAATGGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * ** * *
34755207 CTAGCAGTGGAGTGAAACAAATTGAAGATACAACGGGGAATCTTGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34755256 AC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * ** *** **
34755306 CTGGCAGTATAGT-AGAGCAGATTGAGGCTGCAACGACAAATCTGGCTCTCC
1 CTGGCAGTGCAGTGA-AACAGATTGAAGCCACAACGGTGAATCTTACT-TCC
* * * * * * *
34755357 C-GACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34755406 CTGGCGGTGCAGTGGAACAGATTCAAGCTACAAAGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * ** *
34755456 CTAACATTGCAATTAAAAAGTTTGAAGCCACAACGACGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34755506 CTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * * *
34755556 CTAACATTGCAATTAAAAAGATTAAAGCCAAAATGGCGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34755606 CTGGCGGTGCAGTGGAATAGATTGAA-CCTACAACAGCGAATCTTGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCC-ACAACGGTGAATCTTACTTCC
* * * * * * *
34755655 AC-GACATTGCAATTAAAAAGATT-AAACCTACAACGGTAAATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCC-ACAACGGTGAATCTTACTTCC
* * * * * * * **
34755705 CTGGCGGTGTAGTGAAGCATATTGAAGCTACAACAGTTAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34755755 CCGACAATGCAATGAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * *
34755805 CTCACGGTGCAGTGGAACAAATTGAAACTACAACGGTGAATCTTGCTT-C
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * *
34755854 CTAAACATTGTAATTAAAAAGATTGAAGCTACAACGGTAAATTTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * *
34755905 CCAGCGGCGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTTC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **** *
34755955 CTGACATTGCAATTAAAAAGATTGAAGCCACAACAAAAAATCTTACTTTC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34756005 CTAGCGGTGCAGT-AGATCAGA-TGAAAGCTACAACGGCGAATCTGGC--CC
1 CTGGCAGTGCAGTGA-AACAGATTG-AAGCCACAACGGTGAATCTTACTTCC
* * * * * * * ** *
34756053 TCCGACATTGCAATTAAAAATATTGAAGCCACAACGACGGATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34756104 CTGGCGGTGCAGTGGAACAGGTTGAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * *
34756154 CTAACATTACAATTAAAAAGATTGAAGGCACAATGGTGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34756204 CTGGCGGTACAGTGGAATAGATTGAAACTACAACAGCGAATCTTGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **** *
34756253 AC-GACATTGCAATTAAAAAGATTGAAGCCACAACAAAAAATCTTACTTTC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34756303 CTAGCGGTGCAGT-AGATCAGA-TGAAAGCTACAACGGCGAATCTGGC--CC
1 CTGGCAGTGCAGTGA-AACAGATTG-AAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34756351 TCCGACATTGCAATTAAAAAGATTGAAGCCACAACTGTGAATTTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * *
34756402 CTGGTAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * *
34756452 CTAACATTACAATTAAAAAGATTGAAGGCACAATGGTGAATCTTACTTCT
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34756502 CTGGCGGTACAGTGGAATAGATTGAAACTACAACAGCGAATCTTGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * ** *
34756551 AC-GACATTGCAATTAAAAAGATTAAACCCACAACAGCAAATCTTACTTGC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34756601 CTGGCGGTGTAGTGGAGCATATTGAAGCTACAACAGTGAATCTTGCTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * * * * * * *
34756651 CCGAAAATGTAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTGC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34756701 CTGGCGGTGCAGTGGAACAAATTAAAGCTACAACGGTGAATCTTGCTT-C
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * *
34756750 CTAAACATTGTAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * * *
34756801 CCAGCGGCGCAGTGGAACAGATTCAAGCTACAACTGTAAATCTTATTTTC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * ****
34756851 CTGATATTGCAATTAAAAAGATTGAAGCCACAACAACAAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * **
34756901 CTAACGGTGCAGTGGATCAGATCGAAGCTACAACGGCGAATCTGGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34756950 TCCGACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34757001 CTGGCGGTGCAGTGGAACAGGTTCAAGCTACAACGGTGAATCTTGTTTCTC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTC-C
* * * * * * * *
34757052 C-GACATTGAAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * ** * *
34757101 TTGGCAGTGCACTGGAACAAATTGAAGGTACAACGGGGAATCTTGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34757150 GC-GACATTGCATTTAAA-AAATTGAAGCCACAATGGCGAATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** ** * * * * ** *
34757199 CTGGTGGTATAGTGGAGCAGATTGAAGCTACAACGATGAATCTGGCTCCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34757249 CCGACATTGCAATTAAAAAGTTTGAAGCCACAACGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34757299 CTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34757349 CTGACATTGCTA-TTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCT
1 CTGGCAGTGC-AGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34757399 CTAG-AGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGC-TCC
1 CTGGCA-GTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
34757448 AC-GACATTGCAGTTAAAAAGATTGAAGCCACAACAGTGATTCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * **
34757498 CTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * **
34757548 CCGACATTGCAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34757598 CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTTAC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
*** * * * * * * *
34757647 AC-AATATTACAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
*** * * * * * * * * * *
34757697 CTGTTGGTACAGTGGAGCAGATTAAAGCTATAACGGTAAATATTGCCTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34757747 CCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * * * **
34757797 CTGGCGGTGCAGTGGGATAGATTGAAGCTACAACGTTGAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
*** ** * * *
34757847 CCAACTTTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * ** *
34757897 CTGGC-GTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34757946 CCGACATTGCAATTAAAAAGATTGAAGCCATAACAGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * **
34757996 CTGAC-GATGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTAT
1 CTGGCAG-TGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * **
34758046 CTGACATTGCTA-TTAAAAAGGTTGAAGCCACAATGGCGAATCTGGC-TCC
1 CTGGCAGTGC-AGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34758095 AC-GACATTGCAATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34758145 CTGGCGGTGCAGTGGAGCAGATTGAAGCTATAACGGTAAATCTTACCTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * * * * * ** *
34758195 CCGATATTGTAATTAAAAAGATTGAAGCCACAACGACGAATTTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34758245 CTGGCGGTGCAGTGGAACAGGTTGAAACTACAACGGTGAATCTTGTTTCTC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTC-C
* * * * * * * * * *
34758296 C-GACATTGTAATTAAAAAGATAGAAGCCATAATGGCGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34758345 CTTGCAGTGCCGTGGAACAAATTGAAACTATAACGGTGAATCTTGCTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
34758395 CCGACATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCA
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * **
34758445 CTGGCGGTGCAGCGGAACAGATTAAAGCTATAACGGTGAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
*** * * * *
34758495 CCAAC-GTTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
1 CTGGCAG-TGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* *
34758545 CTGGCAGTGCAGTGAAACAGATTGAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34758595 CTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* *
34758645 CTGGCAGTGCAGTGAAACAGATTGAAGCTACAACGGTGAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34758695 CTGACATTGCAATTAAAAAGATTGAAGCTACAACGGAGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
34758745 CTGGCGGTGTAGTGAAGCATATTGAAGCTACAACGGTGAATCTGGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34758794 TCCGACATTACAATTATAA-AGATTGAAGCCACAATGGCGAATCTTACTTCC
1 -CTGGCAGTGCAGTGA-AACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *
34758845 CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTT-C
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * ** *
34758894 CTAAACATTGTAATTAAAAAGCTTGAAGCTAGTAC-ATCGAATCTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGT-GAATCTTACTTCC
* * * * * * *
34758945 CTGGCGGCGCAGTGGAACAGATTCAAGCTACAATGGTGAATCTTATGTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTA-CTTCC
* ** * * * ****
34758996 C-GACTTTGCAATTAAAAAGATTGAAGCCACAACAACAAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * ** * * * **
34759045 CTAGCGGTGCAATGGAGCAGATCAAAGCTAAAACGGCGAATCTGGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * *
34759094 TCCGACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCC
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * *
34759145 CTGGCGGTGCAGTGGAACATG-TTGAAGCTACAACGGTGAATC-TAGTTTCTC
1 CTGGCAGTGCAGTGAAACA-GATTGAAGCCACAACGGTGAATCTTA-CTTC-C
* * * * * * *
34759196 C-GACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTAGTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * ** *
34759245 CTAGCAGTGCAGTGGACCAAATTGAAGGTACAACAGG-GAATCTTGC-TCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAAC-GGTGAATCTTACTTCC
* * * * * * ** **
34759294 AC-GACATTGGAATTAAAAAGATTGAAGCCACAACGGCCAATCTTACTTTG
1 -CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * **
34759344 CTGGCGGTACAGTGGAGCAGAATGAAGCTACAACGATTAATCTTGTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34759394 CCGACAATGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * *
34759444 TTGGC-GATGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTACTT-C
1 CTGGCAG-TGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * * * * * * *
34759493 CTAAACATTGTAATTAAAAAGATTCAAGCTAAAACGGTGAATCTTACTTCC
1 CT-GGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34759544 CTGGCGGCGCAGTGGAACAGATTTAAGCTACAACGGTAAATCTTATTTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTA-CTTCC
* * * * * ** *
34759595 C-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTTC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * **
34759644 CTAGCGGTGCAGAGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACT-TCC
* * * * * * * **
34759695 C-GACATTGCAATTAAAAAGATTGATGCCACAATGGCAAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
34759744 CTGGCGGTACAGTGGAACAGATTGAAGCTACAACAGTTAATCTTATTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * * **
34759794 CCGACATTGCAATTAAAAAGAGTAAAGCCACAATGGCAAATCTTACTTCC
1 CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
34759844 CT
1 CT
34759846 ATCGGTACAG
Statistics
Matches: 5821, Mismatches: 2459, Indels: 412
0.67 0.28 0.05
Matches are distributed among these distances:
39 15 0.00
40 7 0.00
42 119 0.02
43 2 0.00
44 1 0.00
45 7 0.00
46 3 0.00
47 9 0.00
48 67 0.01
49 777 0.13
50 4699 0.81
51 115 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (50 bp):
CTGGCAGTGCAGTGAAACAGATTGAAGCCACAACGGTGAATCTTACTTCC
Found at i:34751773 original size:249 final size:249
Alignment explanation
Indices: 34751427--34751949 Score: 733
Period size: 249 Copynumber: 2.1 Consensus size: 249
34751417 GTAGTGCAGC
* **
34751427 ATATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAAAGTTTGAAGCCACAA
1 ATATTGAAGCTACAACGGTGAATCTGGCTCCCTCGACATTGCAATTAAAAAGACTGAAGCCACAA
* * * * * *
34751492 CTGTGAATCTTACTTCCCTTGCAGTGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTT
66 CGGCGAATCTTACTTCCCTGGCAGTACAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGTTT
* * * * * * *
34751557 CCCTGACATTGTAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAGT
131 CCCCGACATTGCAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCCCTCGCGGTGCAGT
* * * **
34751622 GGAACAGATTAAAGCTACAACGACAAATCTTGCTCCACGACATTTTAATTAAAA
196 CGAACAAATTAAAGCTACAACGACAAATCTTGCTCCACAACATTACAATTAAAA
*
34751676 ATATTGAAGCTACAACGGTGAATTTGGCTCTCC-CGACATTGCAATTAAAAAGACTGAAGCCACA
1 ATATTGAAGCTACAACGGTGAATCTGGCTC-CCTCGACATTGCAATTAAAAAGACTGAAGCCACA
* *
34751740 ACGGCGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGTT
65 ACGGCGAATCTTACTTCCCTGGCAGTACAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGTT
34751805 TCCCCGACATTGCAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCCCTCGCGGTGCAG
130 TCCCCGACATTGCAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCCCTCGCGGTGCAG
* * * * * *
34751870 TCGAACAAATTGAAGCTATAACGGCGAATCTTGCTTCACAATATTACAATTAAAA
195 TCGAACAAATTAAAGCTACAACGACAAATCTTGCTCCACAACATTACAATTAAAA
* * *
34751925 AGATTGAAGCCACAACGGCGAATCT
1 ATATTGAAGCTACAACGGTGAATCT
34751950 TACTTCCCTG
Statistics
Matches: 239, Mismatches: 34, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
249 237 0.99
250 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (249 bp):
ATATTGAAGCTACAACGGTGAATCTGGCTCCCTCGACATTGCAATTAAAAAGACTGAAGCCACAA
CGGCGAATCTTACTTCCCTGGCAGTACAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGTTT
CCCCGACATTGCAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCCCTCGCGGTGCAGT
CGAACAAATTAAAGCTACAACGACAAATCTTGCTCCACAACATTACAATTAAAA
Found at i:34751800 original size:149 final size:150
Alignment explanation
Indices: 34751527--34751851 Score: 424
Period size: 149 Copynumber: 2.2 Consensus size: 150
34751517 GCAGTGGAGC
* * *
34751527 AGATTGAAGCTACAACGGCGAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGCGAATCTTGTCTCCCTGACATTGCAATTAAAAAGACTGAAGCCACAA
* * *
34751592 TGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTAAAGCTACAACGACAAATCTTG-CT
66 CGGCGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTAAAGCTACAACGACAAATCTTGTCT
**
34751656 CCACGACATTTTAATTAAAA
131 CCACGACATTGCAATTAAAA
* *
34751676 ATATTGAAGCTACAACGGTGAAT-TTGGCTCTCCC-GACATTGCAATTAAAAAGACTGAAGCCAC
1 AGATTGAAGCTACAACGGCGAATCTT-G-TCTCCCTGACATTGCAATTAAAAAGACTGAAGCCAC
* **
34751739 AACGGCGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAAC-AGTGAATCTTG
64 AACGGCGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTAAAGCTACAACGA-CAAATCTTG
* *
34751803 TTTCCCCGACATTGCAATTAAAA
128 TCTCCACGACATTGCAATTAAAA
* * * *
34751826 AGATTAAAGCCACAAAGGCAAATCTT
1 AGATTGAAGCTACAACGGCGAATCTT
34751852 ACTTCCCTCG
Statistics
Matches: 150, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
148 3 0.02
149 105 0.70
150 40 0.27
151 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (150 bp):
AGATTGAAGCTACAACGGCGAATCTTGTCTCCCTGACATTGCAATTAAAAAGACTGAAGCCACAA
CGGCGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTAAAGCTACAACGACAAATCTTGTCT
CCACGACATTGCAATTAAAA
Found at i:34752010 original size:199 final size:198
Alignment explanation
Indices: 34751678--34752340 Score: 688
Period size: 199 Copynumber: 3.4 Consensus size: 198
34751668 AATTAAAAAT
* * * * *
34751678 ATTGAAGCTACAACGGTGAAT-TTGGCTCTCC-CGACATTGCAATTAAAAAGACTGAAGCCACAA
1 ATTGAAGCTACAACGGCGAATCTT-ACT-TCCACAACATTACAATTAAAAAGATTGAAGCCACAA
* * * *
34751741 CGGCGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGTTT
64 CGGCGAATCTTACTTCCCT-G-GGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCCTGCTT
* ** *
34751806 CCCCGACATTGCAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCCCTCGCGGTGCAGT
127 CCCCGACATTGTAATTAAAAAGATTAAAGCCACAAAGGTGAATCTTACTTCCCTGGCGGTGCAGT
34751871 CGAACAA
192 CGAACAA
* * *
34751878 ATTGAAGCTATAACGGCGAATCTTGCTT-CACAATATTACAATTAAAAAGATTGAAGCCACAACG
1 ATTGAAGCTACAACGGCGAATCTTACTTCCACAACATTACAATTAAAAAGATTGAAGCCACAACG
* * * *
34751942 GCGAATCTTACTTCCCTGTTGGTACAGTGGAGCAGATTGAAGCTATAACGGTAAATCCTACCTCC
66 GCGAATCTTACTTCCCTG--GGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCCTGCTTCC
* ** * * *
34752007 CCGACATTGTAATTAAAAAGATTGAAGCCACAACCGTGAATCTTACTTCCCTGGTGTTGCAGTGG
129 CCGACATTGTAATTAAAAAGATTAAAGCCACAAAGGTGAATCTTACTTCCCTGGCGGTGCAGTCG
* *
34752072 GACAG
194 AACAA
** * * * *
34752077 ATTGAAGCTACAACGTTGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
1 ATTGAAGCTACAACGGCGAATCTTACTTCCACAACATTACAATTAAAAAGATTGAAGCCACAACG
* * * *
34752142 GTGAATCTTACTTCCCTCGCGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAAT-CTGGCTTTC
66 GCGAATCTTACTTCCCT-GGGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCCT-GCTTCC
* * *
34752206 TCGACATTTTAATTAAAAAGATTGAAA-CCACAATGGTGAATCTTACTTCCCT----G-GC-G--
129 CCGACATTGTAATTAAAAAGATT-AAAGCCACAAAGGTGAATCTTACTTCCCTGGCGGTGCAGTC
*
34752262 GAACAG
193 GAACAA
** * * * * * *
34752268 ATTGAAGCTACAACGGTAAATCTTATTTCC-CTGACATTGCTATTAAAAATATTGAAGCCACAAT
1 ATTGAAGCTACAACGGCGAATCTTACTTCCAC-AACATTACAATTAAAAAGATTGAAGCCACAAC
34752332 GGCGAATCT
65 GGCGAATCT
34752341 GGCTCCACGA
Statistics
Matches: 398, Mismatches: 57, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
190 1 0.00
191 70 0.18
193 1 0.00
194 2 0.01
198 4 0.01
199 245 0.62
200 72 0.18
201 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (198 bp):
ATTGAAGCTACAACGGCGAATCTTACTTCCACAACATTACAATTAAAAAGATTGAAGCCACAACG
GCGAATCTTACTTCCCTGGGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCCTGCTTCCCC
GACATTGTAATTAAAAAGATTAAAGCCACAAAGGTGAATCTTACTTCCCTGGCGGTGCAGTCGAA
CAA
Found at i:34752031 original size:249 final size:249
Alignment explanation
Indices: 34751527--34752050 Score: 543
Period size: 249 Copynumber: 2.1 Consensus size: 249
34751517 GCAGTGGAGC
* * * * *
34751527 AGATTGAAGCTACAACGGCGAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACAGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAA
* * * * * *
34751592 TGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTAAAGCTACAACGACAAATCTTGCTC
66 AGGCAAATCTTACTTCCCTCGCGGTGCAGTCGAACAAATTAAAGCTACAACGACAAATCTTGCTC
* ** * * * * * * *
34751657 CACGACATTTTAATTAAAAATATTGAAGCTACAACGGTGAATTTGGCTCTCCCGACATTGCAATT
131 CACAACATTACAATTAAAAAGATTGAAGCCACAACGGCGAATTTGACTCTCCCGACAGTACAATG
* * * * * * *
34751722 AAAAAGACTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTACAGTGGAAC
196 AAAAAGACTGAAGCCACAACGGCAAATCCTACCTCCCCGACGGTACAGTGAAAA
34751776 AGATTGAAGCTACAACAGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAA
1 AGATTGAAGCTACAACAGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAA
* * * * *
34751841 AGGCAAATCTTACTTCCCTCGCGGTGCAGTCGAACAAATTGAAGCTATAACGGCGAATCTTGCTT
66 AGGCAAATCTTACTTCCCTCGCGGTGCAGTCGAACAAATTAAAGCTACAACGACAAATCTTGCTC
* *** *
34751906 CACAATATTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTT-ACT-TCCCTGTTGGTACAG
131 CACAACATTACAATTAAAAAGATTGAAGCCACAACGGCGAAT-TTGACTCTCCC-GACAGTACAA
* ** * * * * * *
34751969 TGGAGCAGATTGAAGCTATAACGGTAAATCCTACCTCCCCGACATTGTA-A-TTAAAA
194 TGAAAAAGACTGAAGCCACAACGGCAAATCCTACCTCCCCGAC--GGTACAGTGAAAA
* *
34752025 AGATTGAAGCCACAACCGTGAATCTT
1 AGATTGAAGCTACAACAGTGAATCTT
34752051 ACTTCCCTGG
Statistics
Matches: 222, Mismatches: 49, Indels: 8
0.80 0.18 0.03
Matches are distributed among these distances:
248 4 0.02
249 212 0.95
250 3 0.01
251 3 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (249 bp):
AGATTGAAGCTACAACAGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAA
AGGCAAATCTTACTTCCCTCGCGGTGCAGTCGAACAAATTAAAGCTACAACGACAAATCTTGCTC
CACAACATTACAATTAAAAAGATTGAAGCCACAACGGCGAATTTGACTCTCCCGACAGTACAATG
AAAAAGACTGAAGCCACAACGGCAAATCCTACCTCCCCGACGGTACAGTGAAAA
Found at i:34752330 original size:92 final size:92
Alignment explanation
Indices: 34752173--34752340 Score: 232
Period size: 92 Copynumber: 1.8 Consensus size: 92
34752163 TGCAGTGGAG
* * * *
34752173 CAGATTGAAGCTACAACGGTGAATCTGGCTTTCTCGACATTTTAATTAAAAAGATTGAAACCACA
1 CAGATTGAAGCTACAACGGTAAATCTGGATTTCCCGACATTCTAATTAAAAAGATTGAAACCACA
*
34752238 ATGGTGAATCTTACTTCCCTGGCGGAA
66 ATGGCGAATCTTACTTCCCTGGCGGAA
* * *
34752265 CAGATTGAAGCTACAACGGTAAATCT-TATTTCCCTGACATTGCT-ATTAAAAATATTGAAGCCA
1 CAGATTGAAGCTACAACGGTAAATCTGGATTTCCC-GACATT-CTAATTAAAAAGATTGAAACCA
34752328 CAATGGCGAATCT
64 CAATGGCGAATCT
34752341 GGCTCCACGA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
91 5 0.08
92 60 0.91
93 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (92 bp):
CAGATTGAAGCTACAACGGTAAATCTGGATTTCCCGACATTCTAATTAAAAAGATTGAAACCACA
ATGGCGAATCTTACTTCCCTGGCGGAA
Found at i:34752452 original size:148 final size:142
Alignment explanation
Indices: 34752174--34752488 Score: 368
Period size: 148 Copynumber: 2.2 Consensus size: 142
34752164 GCAGTGGAGC
* * * * **
34752174 AGATTGAAGCTACAACGGTGAATCTGGCTTTCTCGACATTTTAATTAAAAAGATTGAAACCACAA
1 AGATTGAAGCCACAATGGTGAATCTGGCTTCCACGACATTGCAATTAAAAAGATTGAAACCACAA
34752239 TGGTGAATCTTACTTCCCTGGCGGAACAGATTGAAGCTACAACGGTAAATCTTATTTCCCTGACA
66 TGGTGAATCTTACTTCCCTGGCGGAACAGATTGAAGCTACAACGGTAAATCTTATTTCCCTGACA
34752304 TTGCT-ATTAAAA
131 TT-CTAATTAAAA
* * * *
34752316 ATATTGAAGCCACAATGGCGAATCTGGC-TCCACGACATTGCAATTAAAAATATTGAAA-CATAA
1 AGATTGAAGCCACAATGGTGAATCTGGCTTCCACGACATTGCAATTAAAAAGATTGAAACCACAA
* * *
34752379 TGGTGAATCTTACTTCTCTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTCT
66 TGGTGAATCTTACTTCCCTGGC-G-G-A----A-CAGATTGAAGCTACAACGGTAAATCTTAT-T
* *
34752444 TCTC-GACATTTTAATTAAAA
122 TCCCTGACATTCTAATTAAAA
*
34752464 AGATTGAAACCACAATGGTGAATCT
1 AGATTGAAGCCACAATGGTGAATCT
34752489 TACTTCCCTG
Statistics
Matches: 145, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
140 25 0.17
141 26 0.18
142 25 0.17
143 1 0.01
147 2 0.01
148 62 0.43
149 4 0.03
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (142 bp):
AGATTGAAGCCACAATGGTGAATCTGGCTTCCACGACATTGCAATTAAAAAGATTGAAACCACAA
TGGTGAATCTTACTTCCCTGGCGGAACAGATTGAAGCTACAACGGTAAATCTTATTTCCCTGACA
TTCTAATTAAAA
Found at i:34753315 original size:492 final size:492
Alignment explanation
Indices: 34752383--34753861 Score: 2295
Period size: 492 Copynumber: 3.0 Consensus size: 492
34752373 ACATAATGGT
* * * * * * *
34752383 GAATCTTACTTCTCTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTCT-TCT
1 GAATCTTACTTCTCTGGCGGTGCAATGGAGCATATTAAAGCTACAACGATGAATC-TGGCTGCCA
** * * * **
34752447 CGACATTTTAATTAAAAAGATTGAAACCACAA-TGGTGAATCTTACTTCCCTGGCGGTGCAGTGG
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACT-GTGAATCTTGCTTCCCTCGTAGTGCAGTGG
** * *
34752511 AACAAATTGAAGCTACAACGACGAATCTTGCTT-CCTAAACATTGTAATTAAAAAGATTGAAG-C
129 -----A---AAGCTACAACGATAAATCTTGTTTCCCT-GACATTGTAATTAAAAAGATTGAAGTC
* * ** * * * *
34752574 TACAACGACGAATCTTACTTCCCTGGCAGCGCAGTGGAACAGATTCAAGCTACAACGGTGAATCT
185 -ACAATGGCGAATCTTACTTCCCTGGTGGTGCAGTGGGACAGATTGAAGCTACAACGTTGAATCT
34752639 TATTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGT
249 TATTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGT
*
34752704 GCGGTGGAGCAGATTGAAGCTACAACGGCAAATCTGGCTCCTCCGACATTTCAATTAAAAATATT
314 GCGGTGGAGCAGATTGAAGCTACAACGGCAAATCTGGCTCCTCCGACATTGCAATTAAAAATATT
*
34752769 AAAGTCACAACAGCGAATCTTTCTTCCCTGGATGTGCAGTGGAACAGATTGAAGCTACAACGCTG
379 AAAGCCACAACAGCGAATCTTTCTTCCCTGGATGTGCAGTGGAACAGATTGAAGCTACAACGCTG
34752834 AATCTTGTTTCCCTGACATTGCAATTAAAATGATTGAAGCCACAACAAC
444 AATCTTGTTTCCCTGACATTGCAATTAAAATGATTGAAGCCACAACAAC
*
34752883 GAATCTTACTTCTCTGGCGGTGCAATGGAGCATATTAAAGCTACAACGATGAATCTGGCTGCCCC
1 GAATCTTACTTCTCTGGCGGTGCAATGGAGCATATTAAAGCTACAACGATGAATCTGGCTGCCAC
34752948 GACATTGCAATTAAAAAGATTGAAGCCACAACTGTGAATCTTGCTTCCCTCGTAGTGCAGTGGAA
66 GACATTGCAATTAAAAAGATTGAAGCCACAACTGTGAATCTTGCTTCCCTCGTAGTGCAGTGGAA
*
34753013 AGCTACAACGGTAAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAA
131 AGCTACAACGATAAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAA
*
34753078 TCTTACTTCCCTGGTGGTGCAGTGGGACAGATTGAAGCTATAACGTTGAATCTTATTTCCCCGAC
196 TCTTACTTCCCTGGTGGTGCAGTGGGACAGATTGAAGCTACAACGTTGAATCTTATTTCCCCGAC
34753143 ATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGCGGTGGAGCAG
261 ATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGCGGTGGAGCAG
34753208 ATTGAAGCTACAACGGCAAATCTGGCTCCTCCGACATTGCAATTAAAAATATTAAAGCCACAACA
326 ATTGAAGCTACAACGGCAAATCTGGCTCCTCCGACATTGCAATTAAAAATATTAAAGCCACAACA
* *
34753273 GTGAATCTTTCTTCCCTGGATGTGCAGTGGAACAGATTGAAGCTACAACGCTAAATCTTGTTTCC
391 GCGAATCTTTCTTCCCTGGATGTGCAGTGGAACAGATTGAAGCTACAACGCTGAATCTTGTTTCC
34753338 CTGACATTGCAATTAAAATGATTGAAGCCACAACAAC
456 CTGACATTGCAATTAAAATGATTGAAGCCACAACAAC
* *
34753375 GAATCTTACTTCTCTGGCGGTGTAATGGAGCATATTAAAACTACAACGATGAATCTGGCTGCCAC
1 GAATCTTACTTCTCTGGCGGTGCAATGGAGCATATTAAAGCTACAACGATGAATCTGGCTGCCAC
* * *
34753440 AATATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTGCTTCCCTCGTAGTGCAGTGGAA
66 GACATTGCAATTAAAAAGATTGAAGCCACAACTGTGAATCTTGCTTCCCTCGTAGTGCAGTGGAA
34753505 AGCTACAACGATAAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAA
131 AGCTACAACGATAAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAA
34753570 TCTTACTTCCCTGGTGGTGCAGTGGGACAGATTGAAGCTACAACGTTGAATCTTATTTCCCCGAC
196 TCTTACTTCCCTGGTGGTGCAGTGGGACAGATTGAAGCTACAACGTTGAATCTTATTTCCCCGAC
** * * *
34753635 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTCGC-GTGCAGTGGAGCAA
261 ATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGCGGTGGAGCAG
** * * * *
34753699 ATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
326 ATTGAAGCTACAACGGCAAATCTGGCTCCTCCGACATTGCAATTAAAAATATTAAAGCCACAACA
* * ** * *
34753764 GCGAATCTTACTTTCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCC
391 GCGAATCTTTCTTCCCTGGATGTGCAGTGGAACAGATTGAAGCTACAACGCTGAATCTTGTTTCC
*
34753829 CTGACATTGCTATTAAAAAT-ATTGAAGCCACAA
456 CTGACATTGCAATT-AAAATGATTGAAGCCACAA
34753862 TGGCGAATCT
Statistics
Matches: 914, Mismatches: 60, Indels: 19
0.92 0.06 0.02
Matches are distributed among these distances:
491 154 0.17
492 643 0.70
493 4 0.00
495 1 0.00
499 4 0.00
500 107 0.12
501 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (492 bp):
GAATCTTACTTCTCTGGCGGTGCAATGGAGCATATTAAAGCTACAACGATGAATCTGGCTGCCAC
GACATTGCAATTAAAAAGATTGAAGCCACAACTGTGAATCTTGCTTCCCTCGTAGTGCAGTGGAA
AGCTACAACGATAAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAA
TCTTACTTCCCTGGTGGTGCAGTGGGACAGATTGAAGCTACAACGTTGAATCTTATTTCCCCGAC
ATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGCGGTGGAGCAG
ATTGAAGCTACAACGGCAAATCTGGCTCCTCCGACATTGCAATTAAAAATATTAAAGCCACAACA
GCGAATCTTTCTTCCCTGGATGTGCAGTGGAACAGATTGAAGCTACAACGCTGAATCTTGTTTCC
CTGACATTGCAATTAAAATGATTGAAGCCACAACAAC
Found at i:34754099 original size:89 final size:90
Alignment explanation
Indices: 34753929--34754107 Score: 236
Period size: 89 Copynumber: 2.0 Consensus size: 90
34753919 TTACTTCCCT
** * ** **
34753929 GGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGTGAATCTTGTCTTCTCGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAAATTGAAGCTACAACGACGAATCTTGTCTTCTAAACATTGCAATTAAA
34753994 AAGATTGAAACCACAACAACGAATC
66 AAGATTGAAACCACAACAACGAATC
*
34754019 GGCGGTGCAG-GGAACAAATTGAAGCTACAACGACGAATCTTG-CTTCCTAAACATTGTAATTAA
1 GGCGGTGCAGTGGAACAAATTGAAGCTACAACGACGAATCTTGTCTT-CTAAACATTGCAATTAA
* * *
34754082 AAAGATTGAAGCTACAACGACGAATC
65 AAAGATTGAAACCACAACAACGAATC
34754108 TTACTTCCCT
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
88 3 0.04
89 64 0.83
90 10 0.13
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (90 bp):
GGCGGTGCAGTGGAACAAATTGAAGCTACAACGACGAATCTTGTCTTCTAAACATTGCAATTAAA
AAGATTGAAACCACAACAACGAATC
Found at i:34754202 original size:100 final size:100
Alignment explanation
Indices: 34754019--34758088 Score: 4253
Period size: 100 Copynumber: 40.9 Consensus size: 100
34754009 ACAACGAATC
* ** * *** *
34754019 GGCGGTGCAG-GGAACAAATTGAAGCTACAACGACGAATCTTGCTTCCTAAACATTGTAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34754083 AAGATTGAAGCTACAACGACGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * *
34754118 GGCAGCGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
*
34754183 AAGATTGAAGCCACAACGACGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * ** ** *
34754218 AGCGGCGCAGTGGAGCAGATTGAAGCTACAACGGCAAATC-TGGCTCCTCCGACATTACAATTAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC-CCGACATTGCAATTAA
* * * *
34754282 AAATATTAAAGCCACAACAGCGAATCTTTCTTCCCT
65 AAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
** * * *
34754318 GGATGTGTAGTGGAACAGATTGAAGCTACAACGCTGAATCTTGTTTCCCTGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* ** *
34754383 ATGATTGAAGCCACAACAACGAATCTTACTTCTCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * * * * * *
34754418 GGCGGTGCAATGGAGCATATTAAAGCTACAACGATAAATCTGGCTACCCTGACATTACAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * *
34754483 AAGATTGAAGCCACAACTGTGAATCTTGCTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * ** *
34754518 --C-GT--AGT-G--CAG-TGGAAAGCTACAACGGTAAATCTTGTTTCCCTAACATTGTAATTAA
1 GGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAA
* * *
34754574 AAAGATTGAAGTCACAATGGCGAATCTTACTTCTCT
65 AAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * ** * * *
34754610 GGTGGTGCAGTGGAACAGATTGAAGCTATAACGGCAAATCTTG-CTCCACGACATTGTAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * ** *
34754674 AAGATTGAAGCCATAATGGTTAACCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* ** * * * *
34754709 GGCGGTGTACCGGAGCAGATTAAAGCTACAACTGTTAATCTTGTTTCCCCGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34754774 AAGATTGAAGCCACAATGGCGAATCGTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * *** *
34754809 GGCGGTGCAGTGGAACAAATTAAAGCTACAACAGTGAATCTTACTTT-CTAAACATTGTAATTAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GTTTCCCCGACATTGCAATTAA
* * * *
34754873 AAAGATTGAAGCTACAATGACAAATCTTACTTCCCT
65 AAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * * *
34754909 GGCAGCGCAGTGGAACAGATTCAAGCTACAACGGCGCATCTTATTTTCCCGACATTTCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * * *
34754974 AATATTGAAGCCACAACGGTGTATCTTACTTCTCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* ** * * * * * * * * * *
34755009 GGCGGTGCACTGGAGTAGATCGAAGCTACATCGGCGAATCTGGCTCCCCCGATAATACAATTAAC
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34755074 AAGATTGAAGCCACAGCGGTGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * *
34755109 GGCGGTGCAGTGGAACAGGTTGAAGCTACAACAGTGAATCTTATTTCCCCGACATTTCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * *
34755174 AATATTGAGGCCACAATGGCGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * * * *
34755209 AGCAGTGGAGTGAAACAAATTGAAGATACAACGGGGAATCTTG-CTCCACGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
*
34755273 AAGATTGAAGCCACAACGGCAAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* ** * * * * *** **
34755308 GGCAGTATAGTAGAGCAGATTGAGGCTGCAACGACAAATC-TGGCTCTCCCGACATTGCAATTAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC-CCCGACATTGCAATTAA
*
34755372 AAAGTTTGAAGCCACAACGGCGAATCTTACTTCCCT
65 AAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * **
34755408 GGCGGTGCAGTGGAACAGATTCAAGCTACAAAGGTGAATCTTATTTCCCTAACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * *
34755473 AAGTTTGAAGCCACAACGACGAATCTTACTTCTCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * **
34755508 GGCGGTGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * * *
34755573 AAGATTAAAGCCAAAATGGCGAATCTTACTTCTCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * *
34755608 GGCGGTGCAGTGGAATAGATTGAACCTACAACAGCGAATCTTG-CTCCACGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* **
34755672 AAGATT-AAACCTACAACGGTAAATCTTACTTCCCT
66 AAGATTGAAGCC-ACAACGGCGAATCTTACTTCCCT
* * * * * *
34755707 GGCGGTGTAGT-GAAGCATATTGAAGCTACAACAGTTAATCTTGTTTCCCCGACAATGCAATGAA
1 GGCGGTGCAGTGGAA-CAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAA
* *
34755771 AAAGATTGAAGCCACAATGGTGAATCTTACTTCCCT
65 AAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
** * * * *** *
34755807 CACGGTGCAGTGGAACAAATTGAAACTACAACGGTGAATCTTGCTTCCTAAACATTGTAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* ** * *
34755872 AAGATTGAAGCTACAACGGTAAATTTTACTTCCCC
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * *
34755907 AGCGGCGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTTCCTGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
**** *
34755972 AAGATTGAAGCCACAACAAAAAATCTTACTTTCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * **
34756007 AGCGGTGCAGTAGATCAGA-TGAAAGCTACAACGGCGAATC-TG-GCCCTCCGACATTGCAATTA
1 GGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGTTTCC-CCGACATTGCAATTA
* * *
34756069 AAAATATTGAAGCCACAACGACGGATCTTACTTCCCT
64 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * ** *
34756106 GGCGGTGCAGTGGAACAGGTTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTACAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * * *
34756171 AAGATTGAAGGCACAATGGTGAATCTTACTTCTCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * *
34756206 GGCGGTACAGTGGAATAGATTGAAACTACAACAGCGAATCTTG-CTCCACGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
**** *
34756270 AAGATTGAAGCCACAACAAAAAATCTTACTTTCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * **
34756305 AGCGGTGCAGTAGATCAGA-TGAAAGCTACAACGGCGAATC-TG-GCCCTCCGACATTGCAATTA
1 GGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGTTTCC-CCGACATTGCAATTA
* * *
34756367 AAAAGATTGAAGCCACAACTGTGAATTTTACTTCCCT
64 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
** * ** *
34756404 GGTAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTACAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * * *
34756469 AAGATTGAAGGCACAATGGTGAATCTTACTTCTCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * *
34756504 GGCGGTACAGTGGAATAGATTGAAACTACAACAGCGAATCTTG-CTCCACGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * * * *
34756568 AAGATTAAACCCACAACAGCAAATCTTACTTGCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * * *
34756603 GGCGGTGTAGTGGAGCATATTGAAGCTACAACAGTGAATCTTGCTTCCCCGAAAATGTAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * *
34756668 AAGATTGAAGCCACAATGGTGAATCTTACTTGCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * *** *
34756703 GGCGGTGCAGTGGAACAAATTAAAGCTACAACGGTGAATCTTGCTTCCTAAACATTGTAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34756768 AAGATTGAAGCTACAACGGCGAATCTTACTTCCCC
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * * * *
34756803 AGCGGCGCAGTGGAACAGATTCAAGCTACAACTGTAAATCTTATTTTCCTGATATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
** *
34756868 AAGATTGAAGCCACAACAACAAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
** * * * **
34756903 AACGGTGCAGTGGATCAGATCGAAGCTACAACGGCGAATC-TGGCTCCTCCGACATTGCAATTAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC-CCGACATTGCAATTAA
*
34756967 AAATATTGAAGCCACAACGGCGAATCTTACTTCCCT
65 AAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * *
34757003 GGCGGTGCAGTGGAACAGGTTCAAGCTACAACGGTGAATCTTGTTTCTCCGACATTGAAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34757068 AAGATTGAAGCCACAATGGCGAATCTTACTTCCTT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * * *
34757103 GGCAGTGCACTGGAACAAATTGAAGGTACAACGGGGAATCTTG-CTCCGCGACATTGCATTTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
*
34757167 AA-ATTGAAGCCACAATGGCGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* ** * * * * *
34757201 GGTGGTATAGTGGAGCAGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34757266 AAGTTTGAAGCCACAACGGTGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * *
34757301 GGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34757366 AAGATTGAAGCCACAATGGCGAATCTTACTTCTCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * * * *
34757401 AGAGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTG-CTCCACGACATTGCAGTTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * *
34757465 AAGATTGAAGCCACAACAGTGATTCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
*
34757500 GGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* * *
34757565 AAGATTAAAGCCACAAAGGCAAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * ** * * * *
34757600 GGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTT-ACTCCACAATATTACAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
*
34757664 AAGATTGAAGCCACAACAGCGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
** * * * * * * ** *
34757699 GTTGGTACAGTGGAGCAGATTAAAGCTATAACGGTAAATATTGCCTCCCCGACATTGTAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
*
34757764 AAGATTGAAGCCACAACAGCGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * *
34757799 GGCGGTGCAGTGGGATAGATTGAAGCTACAACGTTGAATCTTGTTTCCCCAACTTTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
*
34757864 AAGATTGAAGCCACAACGGTGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * * *
34757899 GGC-GTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34757963 AAGATTGAAGCCATAACAGCGAATCTTACTTCCCT
66 AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
* * * ** * *
34757998 GACGATGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTATCTGACATTGCTATTAAA
1 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
* *
34758063 AAGGTTGAAGCCACAATGGCGAATCT
66 AAGATTGAAGCCACAACGGCGAATCT
34758089 GGCTCCACGA
Statistics
Matches: 3264, Mismatches: 665, Indels: 83
0.81 0.17 0.02
Matches are distributed among these distances:
91 1 0.00
92 67 0.02
94 1 0.00
95 4 0.00
97 5 0.00
98 81 0.02
99 841 0.26
100 2236 0.69
101 28 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (100 bp):
GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAA
AAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
Found at i:34754773 original size:199 final size:199
Alignment explanation
Indices: 34753849--34758088 Score: 4392
Period size: 199 Copynumber: 21.4 Consensus size: 199
34753839 TATTAAAAAT
* * * * * *
34753849 ATTGAAGCCACAATGGCGAATCTGGCTCCACGACATTGCAATTAAAAAGATTGAA-ACATAATGG
1 ATTGAAGCTACAACGGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGG
**
34753913 TGAATCTTACTTCCCTGGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGTGAATCTTGTCTT-C
66 TGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGT-TTCC
* * * *
34753977 TCGACATTGCAATTAAAAAGATTGAAACCACAA---C-AA-C-GA-AT--C-GGCGGTGCAG-GG
130 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
*
34754031 AACAA
195 AACAG
* * * *
34754036 ATTGAAGCTACAACGACGAATCTTGCTTCCTA-AACATTGTAATTAAAAAGATTGAAGCTACAAC
1 ATTGAAGCTACAACGGCGAATCTTGC-TCC-ACGACATTGCAATTAAAAAGATTGAAGCCACAAC
** * * * *
34754100 GACGAATCTTACTTCCCTGGCAGCGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTC
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC
* * * *
34754165 CCCGACATTACAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGCGCAGTG
129 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
*
34754230 GAGCAG
194 GAACAG
* * * * * * *
34754236 ATTGAAGCTACAACGGCAAATCTGGCTCCTCCGACATTACAATTAAAAATATTAAAGCCACAACA
1 ATTGAAGCTACAACGGCGAATCTTGCTCC-ACGACATTGCAATTAAAAAGATTGAAGCCACAACG
* * ** * *
34754301 GCGAATCTTTCTTCCCTGGATGTGTAGTGGAACAGATTGAAGCTACAACGCTGAATCTTGTTTCC
65 GTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC
* * ** * *
34754366 CTGACATTGCAATTAAAATGATTGAAGCCACAACAACGAATCTTACTTCTCTGGCGGTGCAATGG
130 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
* *
34754431 AGCAT
195 AACAG
* *** * *
34754436 ATTAAAGCTACAACGATAAATCTGGCTACC-CTGACATTACAATTAAAAAGATTGAAGCCACAAC
1 ATTGAAGCTACAACGGCGAATCTTGCT-CCAC-GACATTGCAATTAAAAAGATTGAAGCCACAAC
* * * *
34754500 TGTGAATCTTGCTTCCCT--C-GT--AGT-G--CAG-TGGAAAGCTACAACGGTAAATCTTGTTT
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGTTT
** * * * * *
34754556 CCCTAACATTGTAATTAAAAAGATTGAAGTCACAATGGCGAATCTTACTTCTCTGGTGGTGCAGT
128 CCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGT
34754621 GGAACAG
193 GGAACAG
* * * * *
34754628 ATTGAAGCTATAACGGCAAATCTTGCTCCACGACATTGTAATTAAAAAGATTGAAGCCATAATGG
1 ATTGAAGCTACAACGGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * ** * * * *
34754693 TTAACCTTACTTCCCTGGCGGTGTACCGGAGCAGATTAAAGCTACAACTGTTAATCTTGTTTCCC
66 TGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC
* *
34754758 CGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCGTACTTCCCTGGCGGTGCAGTGGA
131 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
*
34754823 ACAA
196 ACAG
* * * * * * * * *
34754827 ATTAAAGCTACAACAGTGAATCTTACTTTCTA-AACATTGTAATTAAAAAGATTGAAGCTACAAT
1 ATTGAAGCTACAACGGCGAATCTTGC--TCCACGACATTGCAATTAAAAAGATTGAAGCCACAAC
*** * * * * * * *
34754891 GACAAATCTTACTTCCCTGGCAGCGCAGTGGAACAGATTCAAGCTACAACGGCGCATCTTATTTT
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC
* * * * * *
34754956 CCCGACATTTCAATTAAAAATATTGAAGCCACAACGGTGTATCTTACTTCTCTGGCGGTGCACTG
129 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
**
34755021 GAGTAG
194 GAACAG
* * * * * * * * *
34755027 ATCGAAGCTACATCGGCGAATCTGGCTCCCCCGATAATACAATTAACAAGATTGAAGCCACAGCG
1 ATTGAAGCTACAACGGCGAATCTTGCT-CCACGACATTGCAATTAAAAAGATTGAAGCCACAACG
* * *
34755092 GTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAACAGTGAATCTTATTTCC
65 GTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC
* * * * * * * *
34755157 CCGACATTTCAATTAAAAATATTGAGGCCACAATGGCGAATCTTACTTCCCTAGCAGTGGAGTGA
130 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
*
34755222 AACAA
195 AACAG
* *
34755227 ATTGAAGATACAACGGGGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGG
1 ATTGAAGCTACAACGGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGG
** * ** * * * * *** **
34755292 CAAATCTTACTTCCCTGGCAGTATAGTAGAGCAGATTGAGGCTGCAACGACAAATC-TGGCTCTC
66 TGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC-C
*
34755356 CCGACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
130 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
34755421 AACAG
195 AACAG
* * * ** * *
34755426 ATTCAAGCTACAAAGGTGAATCTTATTTCC-CTAACATTGCAATTAAAAAGTTTGAAGCCACAAC
1 ATTGAAGCTACAACGGCGAATCTT-GCTCCAC-GACATTGCAATTAAAAAGATTGAAGCCACAAC
** * * *
34755490 GACGAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTC
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC
** * * * *
34755555 CCTAACATTGCAATTAAAAAGATTAAAGCCAAAATGGCGAATCTTACTTCTCTGGCGGTGCAGTG
129 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
*
34755620 GAATAG
194 GAACAG
* * *
34755626 ATTGAACCTACAACAGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATT-AAACCTACAACG
1 ATTGAAGCTACAACGGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCC-ACAACG
* * * * *
34755690 GTAAATCTTACTTCCCTGGCGGTGTAGT-GAAGCATATTGAAGCTACAACAGTTAATCTTGTTTC
65 GTGAATCTTACTTCCCTGGCGGTGCAGTGGAA-CAGATTGAAGCTACAACGGTGAATCTTGTTTC
* * * * **
34755754 CCCGACAATGCAATGAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTCACGGTGCAGTG
129 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
*
34755819 GAACAA
194 GAACAG
* * * * *
34755825 ATTGAAACTACAACGGTGAATCTTGCTTCCTA-AACATTGTAATTAAAAAGATTGAAGCTACAAC
1 ATTGAAGCTACAACGGCGAATCTTGC-TCC-ACGACATTGCAATTAAAAAGATTGAAGCCACAAC
* * ** * * * *
34755889 GGTAAATTTTACTTCCCCAGCGGCGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTT
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC
* **** * * *
34755954 CCTGACATTGCAATTAAAAAGATTGAAGCCACAACAAAAAATCTTACTTTCCTAGCGGTGCAGTA
129 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
*
34756019 GATCAG
194 GAACAG
* * *
34756025 A-TGAAAGCTACAACGGCGAATCTGGC-CCTCCGACATTGCAATTAAAAATATTGAAGCCACAAC
1 ATTG-AAGCTACAACGGCGAATCTTGCTCC-ACGACATTGCAATTAAAAAGATTGAAGCCACAAC
** * * *
34756088 GACGGATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAACGGTGAATCTTATTTC
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC
** * * * * * *
34756153 CCTAACATTACAATTAAAAAGATTGAAGGCACAATGGTGAATCTTACTTCTCTGGCGGTACAGTG
129 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
*
34756218 GAATAG
194 GAACAG
* * **
34756224 ATTGAAACTACAACAGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACAA
1 ATTGAAGCTACAACGGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGG
** * * * * * **
34756289 AAAATCTTACTTTCCTAGCGGTGCAGTAGATCAGA-TGAAAGCTACAACGGCGAATC-TG-GCCC
66 TGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGTTTCC
* * * **
34756351 TCCGACATTGCAATTAAAAAGATTGAAGCCACAACTGTGAATTTTACTTCCCTGGTAGTGCAGTG
130 -CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
34756416 GAACAG
194 GAACAG
* ** * * * *
34756422 ATTGAAGCTACAACGGTGAATCTTATTTCC-CTAACATTACAATTAAAAAGATTGAAGGCACAAT
1 ATTGAAGCTACAACGGCGAATCTT-GCTCCAC-GACATTGCAATTAAAAAGATTGAAGCCACAAC
* * * * * * *
34756486 GGTGAATCTTACTTCTCTGGCGGTACAGTGGAATAGATTGAAACTACAACAGCGAATCTTG-CTC
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC
* * * * * * *
34756550 CACGACATTGCAATTAAAAAGATTAAACCCACAACAGCAAATCTTACTTGCCTGGCGGTGTAGTG
129 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
* *
34756615 GAGCAT
194 GAACAG
* * * * * * *
34756621 ATTGAAGCTACAACAGTGAATCTTGCTTCCCCGAAAATGTAATTAAAAAGATTGAAGCCACAATG
1 ATTGAAGCTACAACGGCGAATCTTGC-TCCACGACATTGCAATTAAAAAGATTGAAGCCACAACG
* * * *
34756686 GTGAATCTTACTTGCCTGGCGGTGCAGTGGAACAAATTAAAGCTACAACGGTGAATCTTGCTTCC
65 GTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC
*** * * ** *
34756751 TAAACATTGTAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCAGCGGCGCAGTGG
130 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
34756816 AACAG
195 AACAG
* * ** ** * *
34756821 ATTCAAGCTACAACTGTAAATCTTATTTTCC-TGATATTGCAATTAAAAAGATTGAAGCCACAAC
1 ATTGAAGCTACAACGGCGAATC-T-TGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAAC
**** ** * * * **
34756885 AACAAATCTTACTTCCCTAACGGTGCAGTGGATCAGATCGAAGCTACAACGGCGAATC-TGGCTC
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC
*
34756949 CTCCGACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGT
129 C-CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGT
34757014 GGAACAG
193 GGAACAG
* * * * * *
34757021 GTTCAAGCTACAACGGTGAATCTTGTTTCTC-CGACATTGAAATTAAAAAGATTGAAGCCACAAT
1 ATTGAAGCTACAACGGCGAATCTTG-CTC-CACGACATTGCAATTAAAAAGATTGAAGCCACAAC
* * * * * * * *
34757085 GGCGAATCTTACTTCCTTGGCAGTGCACTGGAACAAATTGAAGGTACAACGGGGAATCTTG-CTC
64 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC
* * * * **
34757149 CGCGACATTGCATTTAAAAA-ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGTGGTATAGTG
129 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
*
34757213 GAGCAG
194 GAACAG
** * * *
34757219 ATTGAAGCTACAACGATGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGAAGCCACAACG
1 ATTGAAGCTACAACGGCGAATCTTGCT-CCACGACATTGCAATTAAAAAGATTGAAGCCACAACG
* *
34757284 GTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCC
65 GTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC
* * * * * *
34757349 CTGACATTGCTATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCTCTAGAGGTGCAGTGG
130 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
34757414 AACAG
195 AACAG
* * *
34757419 ATTGAAGCTACAACAGCGAATCTTGCTCCACGACATTGCAGTTAAAAAGATTGAAGCCACAACAG
1 ATTGAAGCTACAACGGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* *
34757484 TGATTCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC
66 TGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC
* * *
34757549 CGACATTGCAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCCCTGGCGGTGCAGTGGA
131 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
*
34757614 ACAA
196 ACAG
* * * * *
34757618 ATTGAAGCTACAACGGCGAATCTTACTCCACAATATTACAATTAAAAAGATTGAAGCCACAACAG
1 ATTGAAGCTACAACGGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* ** * * * * * * **
34757683 CGAATCTTACTTCCCTGTTGGTACAGTGGAGCAGATTAAAGCTATAACGGTAAATATTGCCTCCC
66 TGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC
* * *
34757748 CGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGG
131 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
*
34757813 ATAG
196 ACAG
** * * * *
34757817 ATTGAAGCTACAACGTTGAATCTTGTTTCCCCAACTTTGCAATTAAAAAGATTGAAGCCACAACG
1 ATTGAAGCTACAACGGCGAATCTTG-CTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACG
* * * * *
34757882 GTGAATCTTACTTCCCTGGC-GTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCC
65 GTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC
* * * *
34757946 CCGACATTGCAATTAAAAAGATTGAAGCCATAACAGCGAATCTTACTTCCCTGACGATGCAGTGG
130 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
34758011 AACAG
195 AACAG
* * ** * * *
34758016 ATTGAAGCTACAACGGTGAATCTT-ATTTATCTGACATTGCTATTAAAAAGGTTGAAGCCACAAT
1 ATTGAAGCTACAACGGCGAATCTTGCTCCA-C-GACATTGCAATTAAAAAGATTGAAGCCACAAC
*
34758080 GGCGAATCT
64 GGTGAATCT
34758089 GGCTCCACGA
Statistics
Matches: 3353, Mismatches: 630, Indels: 128
0.82 0.15 0.03
Matches are distributed among these distances:
187 22 0.01
188 27 0.01
189 89 0.03
191 46 0.01
192 110 0.03
193 3 0.00
194 4 0.00
195 4 0.00
196 2 0.00
197 8 0.00
198 249 0.07
199 1462 0.44
200 1305 0.39
201 21 0.01
202 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (199 bp):
ATTGAAGCTACAACGGCGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGG
TGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC
CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
ACAG
Found at i:34758378 original size:200 final size:199
Alignment explanation
Indices: 34758067--34760573 Score: 2216
Period size: 200 Copynumber: 12.6 Consensus size: 199
34758057 ATTAAAAAGG
* * * * * *
34758067 TTGAAGCCACAATGGCGAATCTGGC-TCCACGACATTGCAATTAAAAAGATTGAAACCACAATGG
1 TTGAAGCTACAACGGTGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * * **
34758131 TGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGCTATAACGGTAAATCTTACCTCCC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCC
* * * *
34758196 CGATATTGTAATTAAAAAGATTGAAGCCACAACGACGAATTTTACTTCCCTGGCGGTGCAGTGGA
130 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
*
34758261 ACAGG
195 ACAGA
* * * * * *
34758266 TTGAAACTACAACGGTGAATCTTGTTTCTCCGACATTGTAATTAAAAAGATAGAAGCCATAATGG
1 TTGAAGCTACAACGGTGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * * * * **
34758331 CGAATCTTACTTCCCTTGCAGTGCCGTGGAACAAATTGAAACTATAACGGTGAATCTTGCTTCCC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCC
* * * * *
34758396 CGACATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCACTGGCGGTGCAGCGGA
130 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
34758461 ACAGA
195 ACAGA
* * * * * *
34758466 TTAAAGCTATAACGGTGAATCTTGTTTCCCCAACGTTACAATTAAAAAGATTGAAGCCACAACGG
1 TTGAAGCTACAACGGTGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * *
34758531 TGAATCTTACTTCCCTGGCAGTGCAGTGAAACAGATTGAAGCTACAACGGTGAATCTTATTTCCC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCC
* * * *
34758596 TGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGAA
130 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
34758661 ACAGA
195 ACAGA
** *
34758666 TTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACGG
1 TTGAAGCTACAACGGTGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * ***
34758731 AGAATCTTACTTCCCTGGCGGTGTAGT-GAAGCATATTGAAGCTACAACGGTGAATC-TGGCTCC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAA-CAGATTGAAGCTACAACGGTGAATCTTATTTCC
* * *
34758794 TCCGACATTACAATTATAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTG
129 -CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
*
34758859 GAACAAA
193 GAACAGA
** * * * ** **
34758866 TTGAAGCTACAACGGTGAATCTTGCTTCCTAAACATTGTAATTAAAAAGCTTGAAGCTAGTACAT
1 TTGAAGCTACAACGGTGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * *
34758931 CGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATGGTGAATCTTATGTT-C
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTAT-TTCC
* ** * * *
34758995 CCGACTTTGCAATTAAAAAGATTGAAGCCACAACAACAAATCTTACTTCCCTAGCGGTGCAATGG
129 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
*
34759060 AGCAGA
194 AACAGA
** * * * * *
34759066 TCAAAGCTAAAACGGCGAATCTGGCTCCTCCGACATTGCAATTAAAAATATTGAAGCCACAACGG
1 TTGAAGCTACAACGGTGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
34759131 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACATG-TTGAAGCTACAACGGTGAATC-TAGTTTC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAGCTACAACGGTGAATCTTA-TTTC
* * * * * *
34759194 TCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTAGTTCCCTAGCAGTGCAGTG
128 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
* *
34759259 GACCAAA
193 GAACAGA
* *
34759266 TTGAAGGTACAACAGG-GAATCTTGC-TCCACGACATTGGAATTAAAAAGATTGAAGCCACAACG
1 TTGAAGCTACAAC-GGTGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACG
* ** * * * * * *
34759329 GCCAATCTTACTTTGCTGGCGGTACAGTGGAGCAGAATGAAGCTACAACGATTAATCTTGTTTCC
64 GCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCC
* * * * *
34759394 CCGACAATGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGATGCAGTGG
129 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
*
34759459 AACAAA
194 AACAGA
* ** * * * *
34759465 TTGAAGCTACAACGGTGAATCTTACTTCCTAAACATTGTAATTAAAAAGATTCAAGCTAAAACGG
1 TTGAAGCTACAACGGTGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * * *
34759530 TGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTTAAGCTACAACGGTAAATCTTATTTTCC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCC
* * * *
34759595 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTTCCTAGCGGTGCAGAGGA
130 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
*
34759660 GCAGA
195 ACAGA
* * *
34759665 TTGAAGCTACAACGGTGAATCTGGCTCTCCCGACATTGCAATTAAAAAGATTGATGCCACAATGG
1 TTGAAGCTACAACGGTGAATCTTGCT-TCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * *
34759730 CAAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACAGTTAATCTTATTTCCC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCC
* * * * ** *
34759795 CGACATTGCAATTAAAAAGAGTAAAGCCACAATGGCAAATCTTACTTCCCTATCGGTACAGTGGA
130 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
*
34759860 GCAGA
195 ACAGA
* * * * * *
34759865 TTGAAGCTATAATGGTAAATCTTGCTTCCCCGACATTGTAATTAAGAAGATTGAAGCCACAACAG
1 TTGAAGCTACAACGGTGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * *************************
34759930 CAAAATCTTACTT-CCT---TG-GC-G-GG-AC--ACTGNNNNNNNNNNNNNNNNNNNNNNNNNN
65 C-GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTATTTC
******************************************* * * *
34759985 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTTCCCTGGC-ATCCAATG
128 CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
*
34760049 GAGCAGA
193 GAACAGA
* * *
34760056 TTGAAGCTACAACGGTGAATCTGGCTCCCCTGACATTACAATTAAAAAGATTGAAGCCACAACGG
1 TTGAAGCTACAACGGTGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * *
34760121 CGAATCTTACTTCCCTGGTGGTGGAGTGGAACAGATTGAAGCTACAACGTTGAATCTTATTTCCC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCC
** * * * ** *
34760186 TAACATTGCTATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTTTCTGGCGGTACAGTGGA
130 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA
*
34760251 ACATA
195 ACAGA
* ** *
34760256 TTGAAACTACAACGGTGAATCTTGC-TCTATGACATTGCAATTAAAAAGATTGAAGCCACACCGG
1 TTGAAGCTACAACGGTGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * * * * *
34760320 TGAATCTTACTTCCCTGGCAGTACAGTGGAACAAATTGAAGGTACAACGAG-AAATCTTA-CTCC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG-GTGAATCTTATTTCC
* * * *
34760383 ACGACATTGCAATTAAAAA-ATTGAAGCCACAATGGCGAACCTTACTTCCCTGGCGGTACAGTGG
129 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
*
34760447 AGCAGA
194 AACAGA
* * * * * * *
34760453 TTGAAGCTACCACGATGAATCTTGCTCCCTCAACATTGCAATTAAAAGGTTTGAAGCCAGAACGG
1 TTGAAGCTACAACGGTGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * *** * *
34760518 TGAATCATACTTTGGTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGAATC
65 CGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATC
34760574 NNNNNNNNNN
Statistics
Matches: 1824, Mismatches: 443, Indels: 83
0.78 0.19 0.04
Matches are distributed among these distances:
190 13 0.01
191 71 0.04
192 11 0.01
193 2 0.00
194 3 0.00
195 2 0.00
196 2 0.00
197 70 0.04
198 98 0.05
199 294 0.16
200 1232 0.68
201 25 0.01
202 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.25
Consensus pattern (199 bp):
TTGAAGCTACAACGGTGAATCTTGCTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCC
GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAA
CAGA
Found at i:34760112 original size:50 final size:50
Alignment explanation
Indices: 34760053--34760529 Score: 257
Period size: 50 Copynumber: 9.6 Consensus size: 50
34760043 CCAATGGAGC
* ** * *
34760053 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCTGACATTACAATTAAAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAA
* **** * * ** *
34760103 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGGAGTGGAAC
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAA
* * * * *
34760153 AGATTGAAGCTACAACGTTGAATCTTATTTCCCTAACATTGCTATTAAAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAA
* ** * ** * * ** *
34760203 AGATTGAAGCCACAATGGTGAATCTTACTTTTCTGGCGGTACAGTGGAAC
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAA
* * * * **
34760253 ATATTGAAACTACAACGGTGAATCTTGC-TCTATGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAA
* * * * * * *
34760302 AGATTGAAGCCACACCGGTGAATCTTACTTCCCTGGCAGTACAGTGGAACA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACATTGCAAT-TAAAA
** *
34760353 A-ATTGAAGGTACAACGAG-AAATCTTAC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACG-GTGAATCTTACTTCC-CTGACATTGCAATTAAAA
* * * * ** * * ** **
34760401 A-ATTGAAGCCACAATGGCGAACCTTACTTCCCTGGCGGTACAGTGGAGC
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAA
* * * * *
34760450 AGATTGAAGCTACCACGATGAATCTTGC-TCCCTCAACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GACATTGCAATTAAAA
* * * *
34760500 GGTTTGAAGCCAGAACGGTGAATCATACTT
1 AGATTGAAGCCACAACGGTGAATCTTACTT
34760530 TGGTGGCGGT
Statistics
Matches: 294, Mismatches: 123, Indels: 19
0.67 0.28 0.04
Matches are distributed among these distances:
47 1 0.00
48 24 0.08
49 60 0.20
50 203 0.69
51 6 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAA
Found at i:34760200 original size:100 final size:99
Alignment explanation
Indices: 34760028--34760573 Score: 623
Period size: 100 Copynumber: 5.5 Consensus size: 99
34760018 NNNNNNNNNN
* * * * * *
34760028 TTACTTCCCTGGC-ATCCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCTGACAT
1 TTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGATGAATCTTGCT-CCCTGACAT
* *
34760092 TACAATTAAAAAGATTGAAGCCACAACGGCGAATC
65 TGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* ** * ** *
34760127 TTACTTCCCTGGTGGTGGAGTGGAACAGATTGAAGCTACAACGTTGAATCTTATTTCCCTAACAT
1 TTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGATGAATCTT-GCTCCCTGACAT
* *
34760192 TGCTATTAAAAAGATTGAAGCCACAATGGTGAATC
65 TGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
** * * * **
34760227 TTACTTTTCTGGCGGTACAGTGGAACATATTGAAACTACAACGGTGAATCTTGCTCTATGACATT
1 TTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGATGAATCTTGCTCCCTGACATT
*
34760292 GCAATTAAAAAGATTGAAGCCACACCGGTGAATC
66 GCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * *
34760326 TTACTTCCCTGGCAGTACAGTGGAACAAATTGAAGGTACAACGA-GAAATCTTACTCCAC-GACA
1 TTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGATG-AATCTTGCTCC-CTGACA
* * *
34760389 TTGCAATTAAAAA-ATTGAAGCCACAATGGCGAACC
64 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * *
34760424 TTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACCACGATGAATCTTGCTCCCTCAACAT
1 TTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGATGAATCTTGCTCCCT-GACAT
* * *
34760489 TGCAATTAAAAGGTTTGAAGCCAGAACGGTGAATC
65 TGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* *** * *
34760524 ATACTTTGGTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGAATC
1 TTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGATGAATC
34760574 NNNNNNNNNN
Statistics
Matches: 373, Mismatches: 66, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
97 1 0.00
98 68 0.18
99 130 0.35
100 173 0.46
101 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (99 bp):
TTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGATGAATCTTGCTCCCTGACATT
GCAATTAAAAAGATTGAAGCCACAACGGTGAATC
Found at i:34765958 original size:50 final size:49
Alignment explanation
Indices: 34765904--34769201 Score: 580
Period size: 50 Copynumber: 66.4 Consensus size: 49
34765894 GAACAAATTA
* *
34765904 AAGCTACAACGGTGAATCATACTTCCTAAACATTGTAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTTCCT-AACATTGCAATTAAAAAGATTG
* * ** * ** * *
34765954 AAGCTACAACGGTGAATCTTACTTCGCCAGCGGTGCAGTGGAACAGATTC
1 AAGCTACAACGGTGAATCTTACTTC-CTAACATTGCAATTAAAAAGATTG
* *
34766004 AAGCTACAACGGTGAATCTTATTTTCCTGACATTGCAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTA-CTTCCTAACATTGCAATTAAAAAGATTG
* **** * ** * **
34766054 AAGCCACAACAAAAAATCTTACTTCCCTAGCGGTGC-AGTAGATCAGA-TG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTA-AAAAGATTG
* ** * *
34766103 AAAGCTACAACGGCGAATCTGGC-TCCTCCGACATTGCAATTAAAAATATTG
1 -AAGCTACAACGGTGAATCTTACTTCCT--AACATTGCAATTAAAAAGATTG
* ** ** ** * * * *
34766154 AAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCAGTGAAACAGGTTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* ** ** *
34766204 CAA-CTACAACGATGAATCTTGTTTCTCCGACATTGTAATTAAAAAGATTG
1 -AAGCTACAACGGTGAATCTTACTTC-CTAACATTGCAATTAAAAAGATTG
* * * ** * * * * *
34766254 AAGCCACAATGGCGAATCTTACTTCCCTGGCAGTACAGTGGAATAA-ATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAAT-TAAAAAGATTG
* * * *
34766304 AAGGTCCAACGG-GAAATCTTGC-TCC-ACGACATTGCAATTAAAAAGATTA
1 AAGCTACAACGGTG-AATCTTACTTCCTA--ACATTGCAATTAAAAAGATTG
* * ** ***** * * ** *
34766353 AACCCACAACGGCAAATCTTACTTCCCTGGTGGTACAGTGGAACAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * ** ** * *
34766403 AAGCTACAACAGTTAATCTTGTTTCCCCGACATTGCAATTAAAAAGAGTA
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * ** * * * ** **
34766453 AAGCCACAATGGCAAATCTTACTTCCCTATCGA-TACAGTGGAGCAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAAC-ATTGCAATTAAAAAGATTG
* * * * ** *
34766503 AAGCTATAATGGTAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * * ** *** * ** *
34766553 AAGCCACAACAGCGAATCTTACTTCCCTGGCGGGGCAGTGGAATAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
** ** **
34766603 AAGCTACAACATTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * ** * ** **
34766653 AAGCCACAACAGTGAATCTTACTTCCCTGGCA-TCCAATGGAGTAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* ** * * *
34766702 AAGCTACAACAGTGAATCTGGCTCCCCTGACATTACAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACT-TCCTAACATTGCAATTAAAAAGATTG
* * ***** * * ** *
34766752 AAGCCACAACGGCGAATCTTACTTCCTGGTGGTGGAGTGGAACAGATTG
1 AAGCTACAACGGTGAATCTTACTTCCTAACATTGCAATTAAAAAGATTG
* * *
34766801 AAGCTACAACGTTGAATCTTATTTCCCTAACATTGCTATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * * ** ** * * ** * *
34766851 AAGCCACAATGGTGAATATTACTTCTCTGGCGGTACAGTGGAACATATTG
1 AAGCTACAACGGTGAATCTTACTTC-CTAACATTGCAATTAAAAAGATTG
* * * *
34766901 AAACTACAACGGCGAATCTTGC-TCCATGACATTGCAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTTCC-TAACATTGCAATTAAAAAGATTG
* * * ** * * * * *
34766950 AAGCCACACCGGTGAATTTTACTTCCCTGGCAGTACAGTGGAACAA-ATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAAT-TAAAAAGATTG
* * *
34767000 AAGGTACAACGG-GAAATCTTGC-TCC-ACGATATTGCAATTAAAAA-ATTG
1 AAGCTACAACGGTG-AATCTTACTTCCTA--ACATTGCAATTAAAAAGATTG
* * * * ** ** ** * ** **
34767048 AAGCCACAATGGCGAACCTTACTTCCCTGGCGGTATAGTGGATCAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * ** * * *
34767098 AAGCTACAATGATGAATCTGGCTCCCTCAACATTGCAATTAAAAGGTTTG
1 AAGCTACAACGGTGAATCTTACTTCCT-AACATTGCAATTAAAAAGATTG
* * * * ** ** * ** * *
34767148 AAGCCAGAACGGTGAATCATACTTTGCTGGCGGTGCAGTGGAACAGATTC
1 AAGCTACAACGGTGAATCTTAC-TTCCTAACATTGCAATTAAAAAGATTG
** ** * * *
34767198 AAGCTACAACAATGAATCTGGCTGCCCCAACATTACAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACT-TCCTAACATTGCAATTAAAAAGATTG
* * * * ** ** * * *
34767248 AAGCCACAATGGCGAATCTTCCTTCCCTGGCGGTGCAGTGGAACAA-ATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAAT-TAAAAAGATTG
* * * *
34767298 AACCTACAACGGAGAATCTTGC-TCC-ACGACATTGTAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTTCCTA--ACATTGCAATTAAAAAGATTG
* * * * ** ** * * *
34767347 AAGCCACAATGGCGAATCTTCCTTCCCTGGCGGTGCAGTGGAACAA-ATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAAT-TAAAAAGATTG
* *
34767397 AAGGTACAACGG-GAATTCTTGC-TCC-ACGACATTGCAATTAAAAA-ATTG
1 AAGCTACAACGGTGAA-TCTTACTTCCTA--ACATTGCAATTAAAAAGATTG
* * * ** * ** * ** **
34767445 AAGCCACAATGGTGAATCTTAGTTCCCTGGCAGTATAGTGGAGCAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
** * * *
34767495 AAGCTACAACGACGAATCTGACTCCCTCAACATTGCAATTAAAAAGTTTG
1 AAGCTACAACGGTGAATCTTACTTCCT-AACATTGCAATTAAAAAGATTG
* ** * ** ** * ** * *
34767545 AAGCCACAACGACGAATCTTACTTTCTTGGCGGTGCAGTGGAACAGATTC
1 AAGCTACAACGGTGAATCTTAC-TTCCTAACATTGCAATTAAAAAGATTG
* ** * * *
34767595 AAGCTACAACGATGAATCTGGCTGCCCCAACAAAT-CAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACT-TCCTAAC-ATTGCAATTAAAAAGATTG
* * * * ** * *** ** *
34767645 AAACCACGACTGTGAATCTTACTTCCCTTGCAGTGTGGTGGAATAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* ** * *
34767695 AAGCTACAATGGTGAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * ** * * ** * *
34767745 AAGCTACAATGGCGAATCTTACTTCTCTGGCAGTGCAGTGGAACAGATTA
1 AAGCTACAACGGTGAATCTTACTTC-CTAACATTGCAATTAAAAAGATTG
*** * *
34767795 AAGCTACAACGACAAATCTTGC-TCC-ACGACATTGTAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTTCCTA--ACATTGCAATTAAAAAGATTG
* * * * ** **
34767844 AAGCCACAACGATGAATCTTACTTCCCTAGCGA-TGCAGTGGAGCAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAAC-ATTGCAATTAAAAAGATTG
** ** * *
34767894 AAGCTACAACGGTGAATCTGGCTCTCCCGACATTACAATTAAACAGATTG
1 AAGCTACAACGGTGAATCTTACT-TCCTAACATTGCAATTAAAAAGATTG
* * ** ** * ** * *
34767944 AAGCCACAACGGTAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTA
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
*** * * ** * *
34767994 AAGCTACAACGACAAATCTTGCTCCCCGACATTGTAATTAAAAAGATTA
1 AAGCTACAACGGTGAATCTTACTTCCTAACATTGCAATTAAAAAGATTG
* * ** ** * ** * ** * *
34768043 AAGCCACAAAGGCAAATCTTACTTCCCTGGCAGTATAGTGGAACAGATTA
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * * * * *
34768093 AAGCCACATCGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAAGATTA
1 AAGCTACAACGGTGAATCTTACTTCCT-AACATTGCAATTAAAAAGATTG
* * * * * **
34768143 AAGCCACAGCGGCGAATCCTACTTCCAGTGGAACA----AATTCAAACTA-T-
1 AAGCTACAACGGTGAATCTTACTTCC--T--AACATTGCAATTAAAAAGATTG
* * * ** *
34768190 AACGGTA-AATC-TTG---C---CTCCCCGACATTGTAATTAAAAAGATTG
1 AA-GCTACAA-CGGTGAATCTTACTTCCTAACATTGCAATTAAAAAGATTG
* * * ** * * * ** **
34768233 AAGCCATAACAGTGAATCTTACTTTCCTGGCAGTGTACTGGAGCAGATTG
1 AAGCTACAACGGTGAATCTTAC-TTCCTAACATTGCAATTAAAAAGATTG
* * ** *
34768283 AAGCTACAACGTTGAATCTTATTTCCCCGACAATGCAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* ** ** ** *
34768333 AAGCCACAACGGTGAATCTTACTTCCCTGGCA-TGCAATGGAGCAGATTA
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
** * ** *
34768382 AAGCTACAACGGTGAATCTGGCTCCCCCGACATTGTAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACT-TCCTAACATTGCAATTAAAAAGATTG
* * * ** * * * ** **
34768432 AAGCCATAACAGTGAATCTTACTTTCCTGGCAGTGTACTGGAGCAGATTG
1 AAGCTACAACGGTGAATCTTAC-TTCCTAACATTGCAATTAAAAAGATTG
** ** **
34768482 AAGCTACAATTGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * * ** ** * * * *
34768532 AAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTT
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAAT-TAAAAAGATTG
* * *
34768582 AAGCTACAACGGGGAATCTTACTTCCTAAACATTGTAATTAAAAATATTG
1 AAGCTACAACGGTGAATCTTACTTCCT-AACATTGCAATTAAAAAGATTG
* ** ** ** * ** * *
34768632 AAGCTACAATGGCAAATCTTACTTCCCTCGCAACGCAGTGGAACAGATTT
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * ** * * *
34768682 AAGCTACAACGGTGCATCTTATTTTCCCGACATTTCGATTAAAAATATTG
1 AAGCTACAACGGTGAATCTTA-CTTCCTAACATTGCAATTAAAAAGATTG
* * ** ** * ** *
34768732 AAGCCACAACGGGGAATCTTACTTCTCTGGCGGTGC-AGTAGAGCAGATCG
1 AAGCTACAACGGTGAATCTTACTTC-CTAACATTGCAATTA-AAAAGATTG
* * * ** *
34768782 AAGCTACATCGGTGAAT-TTGGCTCCCCCGACATTGCAATTAACAAGATTG
1 AAGCTACAACGGTGAATCTT-ACT-TCCTAACATTGCAATTAAAAAGATTG
* * ** ** * ** * *
34768832 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * ** * *
34768882 AAGCTACAATGGTGAATCTTATTTCCCCGACATTGCAAGTAAAAATATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * ** * ** * * * *
34768932 AGGCCACAGTGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA-ATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAAT-TAAAAAGATTG
* * * *
34768982 AAGGTACAACGAG-AAATCTTGC-TCC-ACGACATTGTAATTAAAAAGATTG
1 AAGCTACAACG-GTGAATCTTACTTCCTA--ACATTGCAATTAAAAAGATTG
* * ** ** * ** *
34769031 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * *
34769081 AAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTT-CCTAACATTGCAATTAAAAAGATTG
* * *
34769131 AAGCTACAACAGTGAACCTTGC-TCC-ACGACATTGCAATTAAAAAGATTG
1 AAGCTACAACGGTGAATCTTACTTCCTA--ACATTGCAATTAAAAAGATTG
* * *
34769180 AAACCACAATGGTGAATCTTAC
1 AAGCTACAACGGTGAATCTTAC
34769202 GTGCAGTGGA
Statistics
Matches: 2211, Mismatches: 909, Indels: 257
0.65 0.27 0.08
Matches are distributed among these distances:
37 3 0.00
41 12 0.01
42 4 0.00
43 6 0.00
44 1 0.00
46 1 0.00
47 4 0.00
48 78 0.04
49 418 0.19
50 1606 0.73
51 70 0.03
52 5 0.00
53 3 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (49 bp):
AAGCTACAACGGTGAATCTTACTTCCTAACATTGCAATTAAAAAGATTG
Found at i:34766037 original size:100 final size:100
Alignment explanation
Indices: 34765867--34774251 Score: 6966
Period size: 100 Copynumber: 83.9 Consensus size: 100
34765857 NNNNNATGGT
* * * * ** **
34765867 GAATCTTACTTCCCTCGCGGTGCAGTGGAACAAATTAAAGCTACAACGGTGAATCATACTTCCTA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34765932 AACATTGTAATTAAAAAGATTGAAGCTACAACGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * *
34765967 GAATCTTACTTCGCC-AGCGGTGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTTCC
1 GAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC
* ***
34766031 TGACATTGCAATTAAAAAGATTGAAGCCACAACAAA
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * **
34766067 AAATCTTACTTCCCTAGCGGTGCAGTAGATCAGA-TGAAAGCTACAACGGCGAATC-TGGCTCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGTTTCC-
* *
34766130 CCGACATTGCAATTAAAAATATTGAAGCCACAACGAC
64 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * *
34766167 GAATCTTACTTCCCTGGCGGTGCAGTGAAACAGGTTGCAA-CTACAACGATGAATCTTGTTTCTC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGTTTCCC
* *
34766231 CGACATTGTAATTAAAAAGATTGAAGCCACAATGGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * * *
34766267 GAATCTTACTTCCCTGGCAGTACAGTGGAATAAATTGAAGGTCCAACGG-GAAATCTTG-CTCCA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTG-AATCTTGTTTCCC
* *
34766330 CGACATTGCAATTAAAAAGATTAAACCCACAACGGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
34766366 AAATCTTACTTCCCTGGTGGTACAGTGGAACAGATTGAAGCTACAACAGTTAATCTTGTTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34766431 GACATTGCAATTAAAAAGAGTAAAGCCACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* ** * * * * * * *
34766466 AAATCTTACTTCCCTATCGATACAGTGGAGCAGATTGAAGCTATAATGGTAAATCTTGCTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34766531 GACATTGTAATTAAAAAGATTGAAGCCACAACAGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * **
34766566 GAATCTTACTTCCCTGGCGGGGCAGTGGAATAGATTGAAGCTACAACATTGAATCTTGTTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34766631 GACATTGCAATTAAAAAGATTGAAGCCACAACAGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * ** * **
34766666 GAATCTTACTTCCCTGGC-ATCCAATGGAGTAGATTGAAGCTACAACAGTGAATC-TGGCTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
*
34766729 TGACATTACAATTAAAAAGATTGAAGCCACAACGGC
66 -GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
34766765 GAATCTTACTT-CCTGGTGGTGGAGTGGAACAGATTGAAGCTACAACGTTGAATCTTATTTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34766829 AACATTGCTATTAAAAAGATTGAAGCCACAATGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * * **
34766864 GAATATTACTTCTCTGGCGGTACAGTGGAACATATTGAAACTACAACGGCGAATCTTG-CTCCAT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34766928 GACATTGCAATTAAAAAGATTGAAGCCACACCGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * *
34766963 GAATTTTACTTCCCTGGCAGTACAGTGGAACAAATTGAAGGTACAACGG-GAAATCTTG-CTCCA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTG-AATCTTGTTTCCC
* *
34767026 CGATATTGCAATTAAAAA-ATTGAAGCCACAATGGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* ** * * * **
34767061 GAACCTTACTTCCCTGGCGGTATAGTGGATCAGATTGAAGCTACAATGATGAATC-TGGCTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC-
* * * * *
34767125 CAACATTGCAATTAAAAGGTTTGAAGCCAGAACGGT
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* ** * ** * * *
34767161 GAATCATACTTTGCTGGCGGTGCAGTGGAACAGATTCAAGCTACAACAATGAATCTGGCTGCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34767226 AACATTACAATTAAAAAGATTGAAGCCACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * *
34767261 GAATCTTCCTTCCCTGGCGGTGCAGTGGAACAAATTGAACCTACAACGGAGAATCTTG-CTCCAC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34767325 GACATTGTAATTAAAAAGATTGAAGCCACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
34767360 GAATCTTCCTTCCCTGGCGGTGCAGTGGAACAAATTGAAGGTACAACGG-GAATTCTTG-CTCCA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAA-TCTTGTTTCCC
* *
34767423 CGACATTGCAATTAAAAA-ATTGAAGCCACAATGGT
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * ** * ** **
34767458 GAATCTTAGTTCCCTGGCAGTATAGTGGAGCAGATTGAAGCTACAACGACGAATC-TGACTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC-
* * *
34767522 CAACATTGCAATTAAAAAGTTTGAAGCCACAACGAC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * *
34767558 GAATCTTACTTTCTTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGAATCTGGCTGCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * * * *
34767623 AACAAAT-CAATTAAAAAGATTGAAACCACGACTGT
66 GAC-ATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * ** * * *
34767658 GAATCTTACTTCCCTTGCAGTGTGGTGGAATAGATTGAAGCTACAATGGTGAATCTTGTTTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34767723 GACATTGTAATTAAAAAGATTGAAGCTACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * *** * *
34767758 GAATCTTACTTCTCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACGACAAATCTTG-CTCCAC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* **
34767822 GACATTGTAATTAAAAAGATTGAAGCCACAACGAT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * **
34767857 GAATCTTACTTCCCTAGCGATGCAGTGGAGCAGATTGAAGCTACAACGGTGAATC-TGGCTCTCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC-CC
* * *
34767921 CGACATTACAATTAAACAGATTGAAGCCACAACGGT
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * *** *
34767957 AAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTAAAGCTACAACGACAAATCTTG-CTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34768021 GACATTGTAATTAAAAAGATTAAAGCCACAAAGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * ** * * * * *
34768056 AAATCTTACTTCCCTGGCAGTATAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCTC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34768121 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * **
34768156 GAATCCTAC-T---T--C----CAGTGGAACAAATTCAAACTATAACGGTAAATCTTGCCTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34768211 GACATTGTAATTAAAAAGATTGAAGCCATAACAGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * *
34768246 GAATCTTACTTTCCTGGCAGTGTACTGGAGCAGATTGAAGCTACAACGTTGAATCTTATTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34768311 GACAATGCAATTAAAAAGATTGAAGCCACAACGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * *
34768346 GAATCTTACTTCCCTGGC-ATGCAATGGAGCAGATTAAAGCTACAACGGTGAATCTGGCTCCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34768410 GACATTGTAATTAAAAAGATTGAAGCCATAACAGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * **
34768445 GAATCTTACTTTCCTGGCAGTGTACTGGAGCAGATTGAAGCTACAATTGTGAATCTTGTTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
*
34768510 GACATTGCAATTAAAAAGATTGAAGCCACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * ** **
34768545 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTTAAGCTACAACGGGGAATCTTACTTCCTA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * * *
34768610 AACATTGTAATTAAAAATATTGAAGCTACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * *** * * * *
34768645 AAATCTTACTTCCCTCGCAACGCAGTGGAACAGATTTAAGCTACAACGGTGCATCTTATTTTCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34768710 GACATTTCGATTAAAAATATTGAAGCCACAACGGG
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * *
34768745 GAATCTTACTTCTCTGGCGGTGCAGTAGAGCAGATCGAAGCTACATCGGTGAAT-TTGGCTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GTTTCCC
*
34768809 CGACATTGCAATTAACAAGATTGAAGCCACAACGGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * *
34768845 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTATTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * **
34768910 GACATTGCAAGTAAAAATATTGAGGCCACAGTGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * *
34768945 GAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGTACAACGAG-AAATCTTG-CTCCA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG-GTGAATCTTGTTTCCC
*
34769008 CGACATTGTAATTAAAAAGATTGAAGCCACAACGGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* *
34769044 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34769109 GACATTGCTATTAAAAAGATTGAAGCTACAACAGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * ** * ** * * * * *
34769144 GAACCTTGC-TCCAC-GACATTGCAATTAAAAAGATTGAAACCACAATGGTGAATCTTACG-TGC
1 GAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT--GTTTC
*** * * *** * ***
34769206 AGTGGAACAGATTG-AAGCTACAACAGTAAATCTTGTTTCC-CTGACATT
63 -CCCG-AC--ATTGCAA-TTA-AA-A--AGA--TTGAAGCCAC-AACGGC
* ** ** ** *** * * ** **
34769254 GTAAT-TAAAAAT-ATTGAAGCCACAATGG--C-GAATCTTACTTCT-CTGGCGGTGCAA--TTG
1 G-AATCT-TACTTCCCTGGCGGTGCAGTGGAACAG-AT-TGA-AGCTAC-AACGGTG-AATCTTG
** * ** ** * ***
34769311 ----AAC-AGATTG-AAGCTATAACGGCAAATCTTG-CTCCACGACATT
59 TTTCCCCGACATTGCAA--T-TAA----AAAGATTGAAGCCACAACGGC
* ** ** ** * * ** ** ** *
34769353 GTAAT-TAAAAAT-ATTGAAGCCATAACGGT-GAATCTTACTT--CCCT--GGCGGTG-TTC-TG
1 G-AATCT-TACTTCCCTG--GCGGT-GCAGTGGAA-CAGA-TTGAAGCTACAACGGTGAATCTTG
*** *** * * **** ** *** * * ***
34769409 GAGCAGATTGA-AGCTACAATGGTGAATCTTGTTTCCCCGACATT
59 TTTC--CCCGACA-TTGCAATTAAAAAGATTGAAGCCACAACGGC
* ****** ** * * ** ** * * ** **
34769453 GTAAT-TAAAAAGATTGAAGCCAT-AATGTCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAA
1 G-AATCTTACTTCCCTG--GCGGTGCA-GTGGAA-C--AGAT---TGAAGCTACAACGG--TGAA
* * * * **
34769516 T-TTAAGTTACAACGACGAATCTTACTTCCTAAACATTGTAATTAAAAAGATTGAAGCTACAGTG
54 TCTT--GTTTC--C-CCG-A-C--A-TTGC---A-------ATTAAAAAGATTGAAGCCACAACG
34769580 GC
99 GC
* * ** * * * * *
34769582 AAATCTTACTTCCCCGGTAGCGCAGTGGAACAGATTCAAGCTACAACGGTGTATCTTATTTTCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34769647 GACATTTCAGTTAAAAATATTGAAGCCACAACGAC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * ** * ** * * * * *
34769682 GAATCTTACTTCTCTAGCGGTGCAGTGGAGTAAATCAAAGCTACATCGGCGAATCTGGCTCCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34769747 GACATTACAATTAACAAGATTAAAGCCACAACGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * * *
34769782 GAATCTTACTTCCCTGG-GTGTGCAATAGAGCAGATTAAAGCTACAACGGTTAATCTGGCTCCCC
1 GAATCTTACTTCCCTGGCG-GTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC
*
34769846 CGACATTGCAATTAAAAAGTTTGAAGCCACAACAGG-
65 CGACATTGCAATTAAAAAGATTGAAGCCACAAC-GGC
** * * **
34769882 GAATCTTACTTCCCTAACAGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATC-TGGCTCTCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC-CC
34769946 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * *
34769982 AAATCTTACTTCCCTGGCGGTACAGTGGAACAGAATCAAGCTACAACGGTGAATCTTGTTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34770047 GACATTGCAATTAAAAAGATTCAAGCCACAATGAC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
34770082 GAATCTTACTTCCCTAGCCGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTG-CTCCAC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
*
34770146 GACATTGCAATTAAAAAGATTGAAGCCACAACAGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *** *
34770181 GAATCTTACTTTCCTGGCGGTACAGTGGAGCAGAGTGAAGCTACAACGACAAATCTTGCTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34770246 GACATTGCAATTAAAAAGATTAAAACTACAACGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * **
34770281 AAATCTTACTTCCCTAGCGGTGTAGAGGAGCAGATTGAAGCTACAACGGTGAATC-TGGCTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
*
34770345 TGACATTGCAGTTAAAAAGATTGAAGCCACAACGGC
66 -GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
34770381 GAATCTTACTTCCCTGGTGGTGGAGTGGAACAGATTAAAGCTACAACGGTGAATCTTATTTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34770446 GACATTGCTATTAAAAAGATTAAAGCCACAATGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * *
34770481 GAATCTTACTTCACTGGCGGTGCAGTGGAACATATTGAAGCTACAACAGCGAA-CTT-TGCTCCA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGT-TTCCC
* * * * *
34770544 CGACATTCCAGTTAAAAAGATTGAAACCACAATGGT
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * *
34770580 AAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTCTTTCTCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC-CC
* * * * *
34770645 C-ACATTGTAATTAAAAAGATTGAAACCTCAATGGT
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * ** **
34770680 GAATCTTACTTTCCTGGCGGAGCAGTGGAACAAATTGAAGCTACAACTGTAAATCTTACTTCCTA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * * * * *
34770745 AACATTGTAATTAAAAATACTGAGGCTACAACGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
34770780 GAATCTTACTTCCCTGACGGTGCAGTGGAACAGATTCAAGCTAGAACGGTGAATATTATTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * * ** *
34770845 GACATTGCAATTTAAAATATTAAAG-AACAGTGCC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * **
34770879 GAATCTTACTTCCCTAGCGATGCAGTGGAGCAGATCGAAGCTACAACGGTGAAT-TTGGCTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC-
* * * *
34770943 CGACATTGAAATTAAAAAGATTGAAGCCAGAGCAGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* *
34770979 GAATCTTACTTCCCTGGAGGTGCAGTGGAACAGATTGAAGCTATAACGGTGAATCTTGTTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34771044 GACATTGTAATTAAAAAGATTGAAGCCACAATC-GT
66 GACATTGCAATTAAAAAGATTGAAGCCACAA-CGGC
* * * * * * * ** *
34771079 GAATCTTACTTCTCTGGCTGTGCAATGGAATAAATTGAAGGTACAACGGGGAATCTT-ACTCCAC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
*
34771143 GACATTGCAATTAAAAAGATTTAAGCCACAACGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * ** * *
34771178 GAATCTTACTTCCCTGGTGGTGGAGTGGAGTGGAATAGATTGAAGCTACAAAAGCGAATCTTG-C
1 GAATCTTACTTCCC---TGG-CG-GTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* * *
34771242 TGCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGT
61 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * **
34771282 GAATCTTACTTCCCTGGCGGTGTAGTGGAGCATATTGAAGCTACAACGATGAATC-TGGCTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC-
34771346 CGACATTGCAATTAAAAA-ATTTGAAGCCACAACGGC
65 CGACATTGCAATTAAAAAGA-TTGAAGCCACAACGGC
* * * * * * * *
34771382 GAATCTTACTTCCCTGACGGTACAGTAGAACAGA-TGCAAGCTACAACGATGAATATGGCTGCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGTTTCCC
* * *
34771446 CAACATTGCAATTAAAAAGATTGAAG--ACAACTGT
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * * *
34771480 GAATCTTACTTCCCTTGCAGTGCAGTAGAGCAGATTGAAGCTACAACGCTGAATCCTGTTTGCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34771545 GACATTGTAATTAAAAAGATTGAAGCCACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * *** * *
34771580 GAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTAAAGCTACAACGACAAATCTTG-CTCCAC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34771644 GACATTGTAATTAAAAAGATTGAAGCCACAACGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * **
34771679 GAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAATGGTGAATC-TGGCTCTCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC-CC
* *
34771743 CGACATTGCAATTAAAAAGATTAAAGCCACAACGGT
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* *
34771779 GAATCTTACTTCCCTGGCGGTACAATGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34771844 GACATTGCAATTAAAAAGATTAAAGCCACAAAGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * ** *
34771879 AAATCTTACTTCCCTGGCGGAGCAATGGAACAAATTGAAGCTATAACGGTGAATCTT-ACTCCAC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34771943 AATATTACAATTAAAAAGATTGAAGCCACAACGAC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
** * * * * * * * **
34771978 GAATCTTACTTCCCTGTTGGTACAGTTGAGCAGATTGAAACTATAACAGTAAATCTTGCCTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34772043 GACATTGTAATTAAAAAGATTGAAGCCACAACAGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
34772078 GAATCTTCCTTCCCTGGCGGTGCAGTGGGACATATTGAAGCTACAACGTTGAATCTTATTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
*
34772143 GACATTGCAATTAAAAAGATTGAAGCCACAACGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * *
34772178 GAATCTTACTTTCCTAGC-GTGCAATTGAGCAGATTGAAGCTACAACGGTGAAT-TTGGCTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GTTTCCC
* *
34772241 CGACATTACAATTAAAAAGATTGAAGCCACAAAGGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * ** * **
34772277 GAATCTTACTTCCCTGGCGGTGCAGTGGAATAAATTGAAGCTACAGCGACGAATCTTGCTTCCTA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34772342 AACATTGTAATTAAAAAGATTAAAGCCACAACGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * ** * * *
34772377 GAATCTTACTTTCCTAGC-GTGC-GATTGAGCAGATTGAAGCTACAACGGCAAAT-TCGGCTCCC
1 GAATCTTACTTCCCTGGCGGTGCAG-TGGAACAGATTGAAGCTACAACGGTGAATCT-TGTTTCC
* * * * **
34772439 CCGACGTTGAAATGAAAAAGATTGAAGCCAGAACATC
64 CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * ** * **
34772476 GAATCTTACTTCCCTGGCGGTGCAGTGGAATAAATTGAAGCTACAGCGACGAATCTTGCTTCCTA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34772541 AACATTGTAATTAAAAAGATTGAAGCTACAACGAC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * ** * *
34772576 GAATCTTACTTCCCTAGCAGCACAGTGGAACAGATTAAAGCTACAACGGTGAATCTTATTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34772641 GACATTGTAATTAAAAAGATTGAAGCCACAACGAC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * ** * * *
34772676 GAATCTTACTTCCCTAGCGGTGCTGTGGAGCAGATTGAAGCTACAACGGCAAAT-TCGGCTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCT-TGTTTCCC
* * * * **
34772740 CGACGTTGAAATGAAAAAGATTGAAGCCAGAACATC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * **
34772776 GAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGTTACAACGGTGAATTTTGTTTTGCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34772841 GACATTGTAATTAAAAAGATTGAAGCCACAACAGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * ** * *
34772876 GAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTCCTC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34772941 GACATTGTAATTAAAAAGATAGAAGCCACAACAGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * *
34772976 GAATCTTTCTTCCCTGGAGGTGCAGTGGAACAGATTGAAGCTACAACGCTGAATCTTGTTTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
**
34773041 GACATTGCAATTAAAATA-ATTGAAGCCACAACAAC
66 GACATTGCAATTAAAA-AGATTGAAGCCACAACGGC
* * * * * * * * * * *
34773076 GAATCTTACTTCTCTGGCGATGTAATGGAGCATATTAAAGCTACAACGATGAATCTGGCTGCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34773141 GACATTGCAATTAAAAAGATTGAAGCCACAACTGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
** * *
34773176 GAATCTTACTTCCCTGGTAGTGCAGT-G----GA---AAGCTACAACGGTAAATCTTGTTTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * *
34773233 GACATTGTAATTAAAAAGATTGAAGTCACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * ** ** **
34773268 GAATCTTACTTCTCTGGTGGTGCAGTGGAACAGATTGAAGCTATAACGGCAAATCTT-ACTCAAC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34773332 GACATTGTAATTAAGAAGATTGAAGCCATAACGGT
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * ** * *
34773367 TAACCTTACTTCCCTGGCGGTGTACTGGAGCAGATTAAAGCTACAATTGTGAATATTGTTTCCTC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34773432 GACATTGTAATTAAAAAGATTGAAGCCACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * ** **
34773467 GAATCTTATTTCCCTGGCGGTGTAGTGGAACAAATTCAAGCTACAACGGCGAATCATACTTCCTA
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34773532 AACATTGTAATTAAAAAGATTGAAGCTACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * * *
34773567 AAATCTTACTTCCCTGGCAGCGCAGTGGAACAAATTCAAGCTACAACGGTGCATCTTATTTTCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* *
34773632 GACATTTCAATTAAAAATATTGAAGCCACAACGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * ** * *
34773667 GAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATCGAAGCTACATCGGCAAAT-TTGGCTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GTTTCCC
* * *
34773731 CGACATTACAATTAACAAGATTGAAGCCACAACGGT
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * *
34773767 GAATCTTACTTCCCTGGCGGTGCAATAGAACAGGTTGAAGCTACAACGGTGAATCTTATTTCCCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34773832 GACATTGTAATTAAAAATATTGAGGCCACAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
34773867 GAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGATACAACGGTGAATCTTG-CTCCAC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
*
34773931 GACTTTGCAATTAAAAAGATTGAAGCCACAACGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* ** * * * * **
34773966 GAATCTTACTTCCCTGGCAGTATAGTAGAGCAGATTGAAGCTGCAACGATGAATC-TGGCTCTCC
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC-CC
*
34774030 CGACATTGCAATTAAAAAGTTTGAAGCCACAACGGC
65 CGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * *
34774066 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTCCCT
1 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
* * * *
34774131 AACATTGCAATTAAAAAGATTAAAGCCAAAATGGC
66 GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * * * * *
34774166 GAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTGAAACTACAACAGCGAATCTTG-CTCCA
1 GAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCC
34774230 CGACATTGCAATTAAAAAGATT
65 CGACATTGCAATTAAAAAGATT
34774252 AAACCNNNNN
Statistics
Matches: 6681, Mismatches: 1403, Indels: 402
0.79 0.17 0.05
Matches are distributed among these distances:
90 69 0.01
91 1 0.00
92 76 0.01
93 1 0.00
94 2 0.00
95 1 0.00
96 2 0.00
97 6 0.00
98 241 0.04
99 1718 0.26
100 4222 0.63
101 121 0.02
102 12 0.00
103 1 0.00
104 97 0.01
105 6 0.00
106 5 0.00
107 1 0.00
108 7 0.00
109 3 0.00
110 18 0.00
111 16 0.00
112 3 0.00
113 4 0.00
114 2 0.00
115 3 0.00
116 1 0.00
118 2 0.00
119 5 0.00
120 2 0.00
121 7 0.00
122 1 0.00
124 2 0.00
126 1 0.00
127 6 0.00
128 4 0.00
129 12 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (100 bp):
GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC
GACATTGCAATTAAAAAGATTGAAGCCACAACGGC
Found at i:34766423 original size:199 final size:198
Alignment explanation
Indices: 34765862--34769140 Score: 3333
Period size: 199 Copynumber: 16.5 Consensus size: 198
34765852 NNNNNNNNNN
* * * * * * *
34765862 ATGGTGAATCTTACTTCCCTCGCGGTGCAGTGGAACAAATTAAAGCTACAACGGTGAATCATACT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-
*** * * * *
34765927 TCCTAAACATTGTAATTAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCGCC-AGCGGTGCA
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC-CCTGGCGGTGCA
* ** * *
34765991 GTGGAACAGATTCAAGCTACAACGGTGAATCTTATTTTCCTGACATTGCAATTAAAAAGATTGAA
129 GTGGAACAGATTGAAGCTACAAC-GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAA
34766056 GCCACA
193 GCCACA
***** * * * * * *
34766062 ACAAAAAATCTTACTTCCCTAGCGGTGCAGTAGATCAGA-TGAAAGCTACAACGGCGAATCTGGC
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTG-AAGCTACAACGGTGAATCTTGC
* *
34766126 TCCTCCGACATTGCAATTAAAAATATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGCA
65 TCC-CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCA
* * * * *
34766191 GTGAAACAGGTTGCAA-CTACAACGATGAATCTTGTTTCTCCGACATTGTAATTAAAAAGATTGA
129 GTGGAACAGATTG-AAGCTACAACG-TGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGA
34766255 AGCCACA
192 AGCCACA
* * * * *
34766262 ATGGCGAATCTTACTTCCCTGGCAGTACAGTGGAATAAATTGAAGGTCCAACGG-GAAATCTTGC
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTG-AATCTTGC
* * * * * *
34766326 TCCACGACATTGCAATTAAAAAGATTAAACCCACAACGGCAAATCTTACTTCCCTGGTGGTACAG
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
* * * *
34766391 TGGAACAGATTGAAGCTACAACAGTTAATCTTGTTTCCCCGACATTGCAATTAAAAAGAGTAAAG
130 TGGAACAGATTGAAGCTACAAC-GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
34766456 CCACA
194 CCACA
* ** * * * * *
34766461 ATGGCAAATCTTACTTCCCTATC-GATACAGTGGAGCAGATTGAAGCTATAATGGTAAATCTTGC
1 ATGGCGAATCTTACTTCCCTGGCAG-TGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC
* * *
34766525 TTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGGGCA
65 -TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCA
* * *
34766590 GTGGAATAGATTGAAGCTACAACATTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAA
129 GTGGAACAGATTGAAGCTACAAC-GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAA
34766655 GCCACA
193 GCCACA
** * * * ** * *
34766661 ACAGTGAATCTTACTTCCCTGGCA-TCCAATGGAGTAGATTGAAGCTACAACAGTGAATCTGGCT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT
* * *
34766725 CCCCTGACATTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT-CCTGGTGGTGGAG
66 CCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
** ** *
34766789 TGGAACAGATTGAAGCTACAACGTTGAATCTTATTTCCCTAACATTGCTATTAAAAAGATTGAAG
130 TGGAACAGATTGAAGCTACAACG-TGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
34766854 CCACA
194 CCACA
* * * * * * * *
34766859 ATGGTGAATATTACTTCTCTGGCGGTACAGTGGAACATATTGAAACTACAACGGCGAATCTTGCT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT
** * * * * *
34766924 CCATGACATTGCAATTAAAAAGATTGAAGCCACACCGGTGAATTTTACTTCCCTGGCAGTACAGT
66 CCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGT
* * * * *
34766989 GGAACAAATTGAAGGTACAACGGGAAATCTTGC-TCCACGATATTGCAATTAAAAA-ATTGAAGC
131 GGAACAGATTGAAGCTACAACGTG-AATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGC
34767052 CACA
195 CACA
* * ** * * * *
34767056 ATGGCGAACCTTACTTCCCTGGCGGTATAGTGGATCAGATTGAAGCTACAATGATGAATCTGGCT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT
* * * * * * **
34767121 CCCTCAACATTGCAATTAAAAGGTTTGAAGCCAGAACGGTGAATCATACTTTGCTGGCGGTGCAG
66 CCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
* * * * * *
34767186 TGGAACAGATTCAAGCTACAACAATGAATCTGGCTGCCCCAACATTACAATTAAAAAGATTGAAG
130 TGGAACAGATTGAAGCTACAAC-GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
34767251 CCACA
194 CCACA
* * * * *
34767256 ATGGCGAATCTTCCTTCCCTGGCGGTGCAGTGGAACAAATTGAACCTACAACGGAGAATCTTGCT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT
* * * *
34767321 CCACGACATTGTAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTTCCCTGGCGGTGCAGT
66 CCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGT
* * * *
34767386 GGAACAAATTGAAGGTACAACGGGAATTCTTGC-TCCACGACATTGCAATTAAAAA-ATTGAAGC
131 GGAACAGATTGAAGCTACAACGTGAA-TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGC
34767449 CACA
195 CACA
* * ** * **
34767453 ATGGTGAATCTTAGTTCCCTGGCAGTATAGTGGAGCAGATTGAAGCTACAACGACGAATC-TGAC
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-C
* * * * *
34767517 TCCCTCAACATTGCAATTAAAAAGTTTGAAGCCACAACGACGAATCTTACTTTCTTGGCGGTGCA
65 TCCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCA
* * * * *
34767582 GTGGAACAGATTCAAGCTACAACGATGAATCTGGCTGCCCCAACAAAT-CAATTAAAAAGATTGA
129 GTGGAACAGATTGAAGCTACAACG-TGAATCTTGCTTCCCCGAC-ATTGCAATTAAAAAGATTGA
*
34767646 AACCACGA
192 AGCCAC-A
* * * ** * * *
34767654 CT-GTGAATCTTACTTCCCTTGCAGTGTGGTGGAATAGATTGAAGCTACAATGGTGAATCTTGTT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-C
* * * * * *
34767718 TCCCTGACATTGTAATTAAAAAGATTGAAGCTACAATGGCGAATCTTACTTCTCTGGCAGTGCAG
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
* ** * *
34767783 TGGAACAGATTAAAGCTACAACGACAAATCTTGC-TCCACGACATTGTAATTAAAAAGATTGAAG
130 TGGAACAGATTGAAGCTACAACG-TGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
34767847 CCACA
194 CCACA
* ** * * *
34767852 ACGATGAATCTTACTTCCCTAGC-GATGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTGGC
1 ATGGCGAATCTTACTTCCCTGGCAG-TGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC
* * **
34767916 TCTCCCGACATTACAATTAAACAGATTGAAGCCACAACGGTAAATCTTACTTCCCTGGCGGTGCA
65 TC-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCA
* ** * *
34767981 GTGGAACAGATTAAAGCTACAACGACAAATCTTGC-TCCCCGACATTGTAATTAAAAAGATTAAA
129 GTGGAACAGATTGAAGCTACAACG-TGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAA
34768045 GCCACA
193 GCCACA
* * ** * * *
34768051 AAGGCAAATCTTACTTCCCTGGCAGTATAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-
* * * * *
34768116 TCCTCGACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGAATCCTAC-T---T--C----CAG
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
* * * * * * *
34768171 TGGAACAAATTCAAACTATAACGGTAAATCTTGCCTCCCCGACATTGTAATTAAAAAGATTGAAG
130 TGGAACAGATTGAAGCTACAAC-GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
*
34768236 CCATA
194 CCACA
** * * * * * * **
34768241 ACAGTGAATCTTACTTTCCTGGCAGTGTACTGGAGCAGATTGAAGCTACAACGTTGAATCTTATT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GC
* * * *
34768306 TCCCCGACAATGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGC-ATGCAA
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
* * * * *
34768370 TGGAGCAGATTAAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGTAATTAAAAAGATTGAAG
130 TGGAACAGATTGAAGCTACAAC-GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
*
34768435 CCATA
194 CCACA
** * * * * * ** *
34768440 ACAGTGAATCTTACTTTCCTGGCAGTGTACTGGAGCAGATTGAAGCTACAATTGTGAATCTTGTT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-C
*
34768505 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAG
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
* * * * *** * *
34768570 TGGAACAAATTTAAGCTACAACGGGGAATCTTACTTCCTAAACATTGTAATTAAAAATATTGAAG
130 TGGAACAGATTGAAGCTACAAC-GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
*
34768635 CTACA
194 CCACA
* * ** * * **
34768640 ATGGCAAATCTTACTTCCCTCGCAACGCAGTGGAACAGATTTAAGCTACAACGGTGCATCTTATT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GC
* * * * * *
34768705 TTCCCGACATTTCGATTAAAAATATTGAAGCCACAACGGGGAATCTTACTTCTCTGGCGGTGCAG
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
* * * * * *
34768770 TAGAGCAGATCGAAGCTACATCGGTGAAT-TTGGCTCCCCCGACATTGCAATTAACAAGATTGAA
130 TGGAACAGATTGAAGCTACAAC-GTGAATCTT-GCTTCCCCGACATTGCAATTAAAAAGATTGAA
34768834 GCCACA
193 GCCACA
* * * * **
34768840 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTATT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GC
* * * ** *
34768905 TCCCCGACATTGCAAGTAAAAATATTGAGGCCACAGTGGCGAATCTTACTTCCCTGGCAGTGCAG
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAG
* * * * *
34768970 TGGAACAAATTGAAGGTACAACGAGAAATCTTGC-TCCACGACATTGTAATTAAAAAGATTGAAG
130 TGGAACAGATTGAAGCTACAACGTG-AATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAG
34769034 CCACA
194 CCACA
* * **
34769039 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATT
1 ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GC
* * *
34769104 TCCCTGACATTGCTATTAAAAAGATTGAAGCTACAAC
65 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAAC
34769141 AGTGAACCTT
Statistics
Matches: 2562, Mismatches: 462, Indels: 111
0.82 0.15 0.04
Matches are distributed among these distances:
189 30 0.01
190 126 0.05
191 1 0.00
193 1 0.00
194 1 0.00
195 1 0.00
196 3 0.00
197 132 0.05
198 341 0.13
199 1011 0.39
200 901 0.35
201 14 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (198 bp):
ATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT
CCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGT
GGAACAGATTGAAGCTACAACGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
ACA
Found at i:34767364 original size:49 final size:49
Alignment explanation
Indices: 34767233--34770196 Score: 220
Period size: 50 Copynumber: 59.9 Consensus size: 49
34767223 CCCAACATTA
* *
34767233 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTTCCCTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * *
34767283 CAGTGGAACAAATTGAA-CCTACAACGGAGAATCTTGC-TCCAC-GACATTG
1 CAAT-TAAAAAATTGAAGCC-ACAATGGCGAATCTTCCTTCC-CTGACAGTG
* * *
34767332 TAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTTCCCTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * ** * * *
34767382 CAGTGGAACAAATTGAAGGTACAACGG-GAATTCTTGC-TCCAC-GACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAA-TCTTCCTTCC-CTGACAGTG
* ** * *
34767431 CAATTAAAAAATTGAAGCCACAATGGTGAATCTTAGTTCCCTGGCAGTA
1 CAATTAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * ** * * * * ** * *
34767480 TAGTGGAGCAGATTGAAGCTACAACGACGAATCTGAC-TCCCTCAACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCT-GACAGTG
* * * * * * * *
34767530 CAATTAAAAAGTTTGAAGCCACAACGACGAATCTTACTTTCTTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * ** ** * ** *
34767580 CAGTGGAACAGATTCAAGCTACAACGATGAATCTGGCTGCCCCAACAAAT-
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGAC-AGTG
* * * *
34767630 CAATTAAAAAGATTGAAACCACGACT-GTGAATCTTACTTCCCTTG-CAGTG
1 CAATTAAAAA-ATTGAAGCCAC-AATGGCGAATCTTCCTTCCC-TGACAGTG
*** * * * * * ** *
34767680 TGGTGGAATAGATTGAAGCTACAATGGTGAATCTTGTTTCCCTGACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * *
34767730 TAATTAAAAAGATTGAAGCTACAATGGCGAATCTTACTTCTCTGGCAGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * * * * *
34767780 CAGTGGAACAGATTAAAGCTACAACGACAAATCTTGC-TCCAC-GACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCC-CTGACAGTG
* * ** *
34767829 TAATTAAAAAGATTGAAGCCACAACGATGAATCTTACTTCCCT-AGC-GATG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGA-CAG-TG
* * ** * * * * ** * *
34767879 CAGTGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCTCCC-GACATTA
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCT-TCCCTGACAGTG
* * ** * * *
34767929 CAATTAAACAGATTGAAGCCACAACGGTAAATCTTACTTCCCTGGCGGTG
1 CAATTAAA-AAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * * * * * *
34767979 CAGTGGAACAGATTAAAGCTACAACGACAAATCTTGC-TCCCCGACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * *
34768028 TAATTAAAAAGATTAAAGCCACAAAGGCAAATCTTACTTCCCTGGCAGTA
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * * *
34768078 TAGTGGAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTT-CCTCGACATTG
1 CAAT-TAAAAAATTGAAGCCACAAT-GGCGAATCTTCCTTCCCT-GACAGTG
* * ** * *
34768128 CAGTTAAAAAGATTAAAGCCACAGCGGCGAATCCTACTT--C---CAGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * ** * *
34768173 ----GAACAAATTCAAACTATAACGGTAAATCTTGCC-TCCCCGACATTG
1 CAATTAAAAAATTGAAGCCACAATGGCGAATCTT-CCTTCCCTGACAGTG
* * ** * * * *
34768218 TAATTAAAAAGATTGAAGCCATAACAGTGAATCTTACTTTCCTGGCAGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * ** * * * ** ** * *
34768268 TACTGGAGCAGATTGAAGCTACAACGTTGAATCTTATTTCCCCGACAATG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * *
34768318 CAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCA-TG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* ** * * * * * ** * * *
34768367 CAATGGAGCAGATTAAAGCTACAACGGTGAATCTGGCTCCCCCGACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * ** * * * *
34768417 TAATTAAAAAGATTGAAGCCATAACAGTGAATCTTACTTTCCTGGCAGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * ** * * * * ** * *
34768467 TACTGGAGCAGATTGAAGCTACAATTGTGAATCTTGTTTCCCCGACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * *
34768517 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * * * *
34768567 CAGTGGAACAAATTTAAGCTACAACGGGGAATCTTACTT-CCTAAACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCT-GACAGTG
* * * * **
34768617 TAATTAAAAATATTGAAGCTACAATGGCAAATCTTACTTCCCTCG-CAACG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCT-GACAGTG
* * * * * * * * * ** * *
34768667 CAGTGGAACAGATTTAAGCTACAACGGTGCATCTTATTTTCCC-GACATTT
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTT-CCTTCCCTGACAGTG
* * * * * * *
34768717 CGATTAAAAATATTGAAGCCACAACGGGGAATCTTACTTCTCTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * * * *
34768767 C-AGTAGAGCAGATCGAAGCTAC-ATCGGTGAAT-TTGGCTCCCCCGACATTG
1 CAATTA-A-AAAATTGAAGCCACAAT-GGCGAATCTT-CCTTCCCTGACAGTG
* * * * *
34768817 CAATTAACAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
1 CAATTAA-AAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * ** * * ** * *
34768867 CAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTATTTCCCCGACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * *
34768917 CAAGTAAAAATATTGAGGCCACAGTGGCGAATCTTACTTCCCTGGCAGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * ** * * * *
34768967 CAGTGGAACAAATTGAAGGTACAACGAG-AAATCTTGC-TCCAC-GACATTG
1 CAAT-TAAAAAATTGAAGCCACAATG-GCGAATCTTCCTTCC-CTGACAGTG
* * * * *
34769016 TAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * ** *
34769066 CAGTGGAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * ** * * * *
34769116 CTATTAAAAAGATTGAAGCTACAACAGTGAACCTTGC-TCCAC-GACATTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCC-CTGACAGTG
* * * *
34769165 CAATTAAAAAGATTGAAACCACAATGGTGAA---T-CTTACGTG-CAGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * ** ** ** *
34769210 ----GAACAGATTGAAGCTACAACAGTAAATCTTGTTTCCCTGACATTG
1 CAATTAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * *
34769255 TAATTAAAAATATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * *
34769305 CAATTGAACAGATTGAAGCTATAACGGCAAATCTTGC-TCCAC-GACATTG
1 CAATT-AAAAAATTGAAGCCACAATGGCGAATCTTCCTTCC-CTGACAGTG
* * * * * * *
34769354 TAATTAAAAATATTGAAGCCATAACGGTGAATCTTACTTCCCTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
*** * ** * * * ** * *
34769404 TTCTGGAGCAGATTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * *
34769454 TAATTAAAAAGATTGAAGCCATAATGTCGAATCTTACTTCCCTGGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * ** * * * * *
34769504 CAGTGGAACAAATTTAAGTTACAACGACGAATCTTACTT-CCTAAACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCT-GACAGTG
* * * * * * ** *
34769554 TAATTAAAAAGATTGAAGCTACAGTGGCAAATCTTACTTCCCCGGTAGCG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * * * ** * *
34769604 CAGTGGAACAGATTCAAGCTACAACGGTGTATCTTATTTTCCC-GACATTT
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTT-CCTTCCCTGACAGTG
* * * * * *
34769654 CAGTTAAAAATATTGAAGCCACAACGACGAATCTTACTTCTCT-AGCGGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGA-CAGTG
* * ** ** * ** * * * *
34769704 CAGTGGAGTAAATCAAAGCTAC-ATCGGCGAATCTGGCTCCCCCGACATTA
1 CAAT-TAAAAAATTGAAGCCACAAT-GGCGAATCTTCCTTCCCTGACAGTG
* * * * ***
34769754 CAATTAACAAGATTAAAGCCACAACGGCGAATCTTACTTCCCTGGGTGTG
1 CAATTAA-AAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * ** ** * * *
34769804 CAA-TAGAGCAGATTAAAGCTACAACGGTTAATCTGGCTCCCCCGACATTG
1 CAATTA-A-AAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * *
34769854 CAATTAAAAAGTTTGAAGCCACAACAGG-GAATCTTACTTCCCTAACAGTG
1 CAATTAAAAA-ATTGAAGCCACAA-TGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * ** *
34769904 CAGTGGAACAGATTGAAGCTACAACGGCGAATCTGGCTCTCCC-GACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCT-TCCCTGACAGTG
* * * * * *
34769954 CAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTA
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * * * * * ** * *
34770004 CAGTGGAACAGAA-TCAAGCTACAACGGTGAATCTTGTTTCCCCGACATTG
1 CAAT-TAA-AAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
* * * *
34770054 CAATTAAAAAGATTCAAGCCACAATGACGAATCTTACTTCCCT-AGCCGTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTGA-CAGTG
* * * * * * * *
34770104 CAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTG
1 CAAT-TAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCC-CTGACAGTG
** * *
34770153 CAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTTCCTG
1 CAATTAAAAA-ATTGAAGCCACAATGGCGAATCTTCCTTCCCTG
34770197 GCGGTACAGT
Statistics
Matches: 2010, Mismatches: 756, Indels: 296
0.66 0.25 0.10
Matches are distributed among these distances:
40 32 0.02
41 8 0.00
42 1 0.00
43 1 0.00
44 5 0.00
45 17 0.01
46 4 0.00
48 46 0.02
49 396 0.20
50 1386 0.69
51 112 0.06
52 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (49 bp):
CAATTAAAAAATTGAAGCCACAATGGCGAATCTTCCTTCCCTGACAGTG
Found at i:34769320 original size:50 final size:50
Alignment explanation
Indices: 34769214--34774251 Score: 1879
Period size: 50 Copynumber: 101.1 Consensus size: 50
34769204 GCAGTGGAAC
* ** ** * *
34769214 AGATTGAAGCTACAACAGTAAATCTTGTTTCCCTGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * ** *
34769264 ATATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAATTGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * *
34769314 AGATTGAAGCTATAACGGCAAATCTTGC-TCCAC-GACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGACATTGCAATTGAAA
* * * * * ** *** * **
34769363 ATATTGAAGCCATAACGGTGAATCTTACTTCCCTGGCGGTGTTCTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * ** * * *
34769413 AGATTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * ** * *
34769463 AGATTGAAGCCATAATGTCGAATCTTACTTCCCTGGCGGTGCAGTGGAACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* * * * * *
34769514 A-ATTTAAGTTACAACGACGAATCTTACTT-CCTAAACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
** * * ** ** * * *
34769563 AGATTGAAGCTACAGTGGCAAATCTTACTTCCCCGGTAGCGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * * *
34769613 AGATTCAAGCTACAACGGTGTATCTTATTTTCCC-GACATTTCAGTTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTA-CTTCCCTGACATTGCAATTGAAA
* * * * ** * * *
34769663 ATATTGAAGCCACAACGACGAATCTTACTTCTCT-AGCGGTGCAGTGGAGTA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTGA-AA
** * ** * * *
34769714 A-ATCAAAGCTACATCGGCGAATCTGGCTCCCCCGACATTACAATT-AACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* * ** * **
34769763 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTG-GGTGTGCAATAGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAT-TGCAATTGAAA
* ** ** * * *
34769813 AGATTAAAGCTACAACGGTTAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * * *
34769863 AGTTTGAAGCCACAACAGG-GAATCTTACTTCCCTAACAGTGCAGTGGAAC
1 AGATTGAAGCTACAAC-GGCGAATCTTACTTCCCTGACATTGCAATTGAAA
** *
34769913 AGATTGAAGCTACAACGGCGAATCTGGCTCTCCC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACT-TCCCTGACATTGCAATTGAAA
* * * ** * * * *
34769963 AGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTACAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * ** * *
34770013 AGAATCAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * ** * *
34770063 AGATTCAAGCCACAATGACGAATCTTACTTCCCT-AGCCGTGCAGTGGAACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTGAA-A
* * *
34770114 A-ATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGACATTGCAATTGAAA
* * * * ** * * * **
34770162 AGATTGAAGCCACAACAGCGAATCTTACTTTCCTGGCGGTACAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * *
34770212 AGAGTGAAGCTACAACGACAAATCTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * ** ** * * **
34770262 AGATTAAAACTACAACGGTAAATCTTACTTCCCT-AGCGGTGTAGA-GGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCA-ATTGAAA
* ** * * *
34770312 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCTGACATTGCAGTTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* **** * * * *
34770362 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGGAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * *
34770412 AGATTAAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * * ** * * *
34770462 AGATTAAAGCCACAATGGTGAATCTTACTTCACTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * *
34770512 ATATTGAAGCTACAACAGCGAA-CTTTGC-TCCAC-GACATTCCAGTTAAAA
1 AGATTGAAGCTACAACGGCGAATC-TTACTTCC-CTGACATTGCAATTGAAA
* * * ** ** * * **
34770561 AGATTGAAACCACAATGGTAAATCTTACTTCCCT-AGCGGTGCAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTGAAA
* * * *
34770611 AGATTGAAGCTACAACGGTGAATCTT-CTTTCTCC-CACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTAC-TTC-CCTGACATTGCAATTGAAA
* * * * * *** * *
34770661 AGATTGAAACCT-CAATGGTGAATCTTACTTTCCTGGCGGAGCAGTGGAACA
1 AGATTG-AAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* ** * * *
34770712 A-ATTGAAGCTACAACTGTAAATCTTACTT-CCTAAACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * * * ** * * *
34770761 ATACTGAGGCTACAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * * *
34770811 AGATTCAAGCTAGAACGGTGAATATTATTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * ** * * * **
34770861 ATATTAAAG-AACAGTGCCGAATCTTACTTCCCT-AGCGA-TGCAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-C-ATTGCAATTGAAA
* * * * *
34770910 AGATCGAAGCTACAACGGTGAAT-TTGGC-TCCCTCGACATTGAAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTT-ACTTCCCT-GACATTGCAATTGAAA
* * * * ** * * *
34770960 AGATTGAAGCCAGAGCAGCGAATCTTACTTCCCTGGA-GGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * ** * * *
34771010 AGATTGAAGCTATAACGGTGAATCTTGTTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * *
34771060 AGATTGAAGCCACAATC-GTGAATCTTACTTCTCTGGC-TGTGCAATGGAATA
1 AGATTGAAGCTACAA-CGGCGAATCTTACTTCCCTGACAT-TGCAATTGAA-A
* * *
34771111 A-ATTGAAGGTACAACGGGGAATCTTAC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGACATTGCAATTGAAA
* * ** * * * * *
34771159 AGATTTAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGGAGTGGAGTGGAAT
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCC---T-G-ACATTGCAATTGAAA
** * * * *
34771214 AGATTGAAGCTACAAAAGCGAATCTTGCTGCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * ** * * * **
34771263 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* ** **
34771313 ATATTGAAGCTACAACGATGAATCTGGC-TCCCTCGACATTGCAATT-AAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * ** * * * *
34771362 AAATTTGAAGCCACAACGGCGAATCTTACTTCCCTGACGGTACAGTAGAAC
1 AGA-TTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
** * ** * ** *
34771413 AGA-TGCAAGCTACAACGATGAATATGGCTGCCCCAACATTGCAATTAAAA
1 AGATTG-AAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * **
34771463 AGATTGAAG--ACAACTGTGAATCTTACTTCCCTTG-CAGTGCAGTAGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCC-TGACATTGCAATTGAAA
* ** * * *
34771511 AGATTGAAGCTACAAC-GCTGAATCCTGTTTGCCTGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGC-GAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * ** * * *
34771561 AGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * *
34771611 AGATTAAAGCTACAACGACAAATCTTGC-TCCAC-GACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGACATTGCAATTGAAA
* * ** * * **
34771660 AGATTGAAGCCACAACGGTGAATCTTACTTCCCT-AGCGGTGCAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTGAAA
* * ** *
34771710 AGATTGAAGCTACAATGGTGAATCTGGCTCTCCC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACT-TCCCTGACATTGCAATTGAAA
* * * * ** * * *
34771760 AGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAATGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* ** * *
34771810 AGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * *** *
34771860 AGATTAAAGCCACAAAGGCAAATCTTACTTCCCTGGCGGAGCAATGGAACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* * * * * *
34771911 A-ATTGAAGCTATAACGGTGAATCTTAC-TCCAC-AATATTACAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGACATTGCAATTGAAA
* * **** * * **
34771959 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGTTGGTACAGTTGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * ** * * * * *
34772009 AGATTGAAACTATAACAGTAAATCTTGCCTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * ** * * * *
34772059 AGATTGAAGCCACAACAGCGAATCTTCCTTCCCTGGCGGTGCAGTGGGAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* ** * * *
34772109 ATATTGAAGCTACAACGTTGAATCTTATTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * **
34772159 AGATTGAAGCCACAACGGTGAATCTTACTTTCCT-AGC-GTGCAATTGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTGAAA
* * * * * *
34772208 AGATTGAAGCTACAACGGTGAAT-TTGGCTCCCCCGACATTACAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTT-ACTTCCCTGACATTGCAATTGAAA
* * * ** * *
34772258 AGATTGAAGCCACAAAGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* * * * * *
34772309 A-ATTGAAGCTACAGCGACGAATCTTGCTT-CCTAAACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * * * * * **
34772358 AGATTAAAGCCACAACGGTGAATCTTACTTTCCT-AGC-GTGCGATTGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTGAAA
* ** * * * *
34772407 AGATTGAAGCTACAACGGCAAAT-TCGGCTCCCCCGACGTTG-AAATGAAAA
1 AGATTGAAGCTACAACGGCGAATCT-TACTTCCCTGACATTGCAATTG-AAA
* * ** * ** * *
34772457 AGATTGAAGCCAGAACATCGAATCTTACTTCCCTGGCGGTGCAGTGGAATA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* * * * * *
34772508 A-ATTGAAGCTACAGCGACGAATCTTGCTT-CCTAAACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * *
34772557 AGATTGAAGCTACAACGACGAATCTTACTTCCCT-AGCA--GCACAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCA-A-TTGAAA
* * * * * *
34772607 AGATTAAAGCTACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * ** ** * **
34772657 AGATTGAAGCCACAACGACGAATCTTACTTCCCT-AGCGGTGCTGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTGAAA
* ** * * * *
34772707 AGATTGAAGCTACAACGGCAAAT-TCGGCTCCCCCGACGTTG-AAATGAAAA
1 AGATTGAAGCTACAACGGCGAATCT-TACTTCCCTGACATTGCAATTG-AAA
* * ** * ** * * * *
34772757 AGATTGAAGCCAGAACATCGAATCTTACTTCCCTGGCGGTGTAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * ** * * *
34772807 AGATTGAAGTTACAACGGTGAATTTTGTTTTGCC-GACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTT-ACTTCCCTGACATTGCAATTGAAA
* * * * ** * * * **
34772857 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTACAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * *
34772907 AGATTGAAGCTACAACGGCAAATCTTGCTT-CCTCGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * * * ** * * *
34772957 AGATAGAAGCCACAACAGCGAATCTTTCTTCCCTGGA-GGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
**
34773007 AGATTGAAGCTACAAC-GCTGAATCTTGTTTCCCTGACATTGCAATT-AAA
1 AGATTGAAGCTACAACGGC-GAATCTTACTTCCCTGACATTGCAATTGAAA
* * ** * * * * **
34773056 ATAATTGAAGCCACAACAACGAATCTTACTTCTCTGGCGA-TGTAATGGAGC
1 A-GATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATTGAAA
* * ** ** * * *
34773107 ATATTAAAGCTACAACGATGAATCTGGCTGCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * ** * *
34773157 AGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGC-AGTG---
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
** ** * *
34773203 -GA---AAGCTACAACGGTAAATCTTGTTTCCCTGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * **** * * *
34773249 AGATTGAAG-TCACAATGGCGAATCTTACTTCTCTGGTGGTGCAGTGGAAC
1 AGATTGAAGCT-ACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * *
34773299 AGATTGAAGCTATAACGGCAAATCTTAC-TCAAC-GACATTGTAATT-AAGA
1 AGATTGAAGCTACAACGGCGAATCTTACTTC-CCTGACATTGCAATTGAA-A
* * ** * * ** * * * **
34773348 AGATTGAAGCCATAACGGTTAACCTTACTTCCCTGGCGGTGTACTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* ** * * * * * *
34773398 AGATTAAAGCTACAATTGTGAATATT-GTTTCCTCGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * * * ** * * *
34773448 AGATTGAAGCCACAATGGCGAATCTTATTTCCCTGGCGGTGTAGTGGAACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* * * * *
34773499 A-ATTCAAGCTACAACGGCGAATCATACTT-CCTAAACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * * ** * *
34773548 AGATTGAAGCTACAATGGCAAATCTTACTTCCCTGGCAGCGCAGTGGAACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* * * * * *
34773599 A-ATTCAAGCTACAACGGTGCATCTTATTTTCCC-GACATTTCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTA-CTTCCCTGACATTGCAATTGAAA
* * * * ** * * *
34773648 ATATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * * *
34773698 AGATCGAAGCTACATCGGCAAAT-TTGGCTCCCCCGACATTACAATT-AACA
1 AGATTGAAGCTACAACGGCGAATCTT-ACTTCCCTGACATTGCAATTGAA-A
* * * ** * *
34773748 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAATAGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * *
34773798 AGGTTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * * * *
34773848 ATATTGAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAA-A
* * * * *
34773899 A-ATTGAAGATACAACGGTGAATCTTGC-TCCAC-GACTTTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGACATTGCAATTGAAA
* * * ** * * **
34773947 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTATAGTAGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* ** ** *
34773997 AGATTGAAGCTGCAACGATGAATCTGGCTCTCCC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACT-TCCCTGACATTGCAATTGAAA
* * * ** * * *
34774047 AGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * *
34774097 AGATTCAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * * * * ** * * *
34774147 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCTACAACGGCGAATC-TTACTTCCCTGACATTGCAATTGAAA
* * * *
34774198 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGACATTGCAATTGAAA
34774247 AGATT
1 AGATT
34774252 AAACCNNNNN
Statistics
Matches: 3449, Mismatches: 1360, Indels: 359
0.67 0.26 0.07
Matches are distributed among these distances:
42 27 0.01
43 2 0.00
45 2 0.00
47 2 0.00
48 49 0.01
49 537 0.16
50 2627 0.76
51 167 0.05
52 2 0.00
54 1 0.00
55 33 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
Found at i:34779671 original size:100 final size:100
Alignment explanation
Indices: 34779493--34788271 Score: 8815
Period size: 100 Copynumber: 88.2 Consensus size: 100
34779483 NNNNNNNNNN
* * *
34779493 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTTGAGA-AGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA-ACAGATTG
* *
34779557 AAGCTACAATGGTGAATCTGGCTCTCCCGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * *
34779593 AATTAAAAAGATTGAAGCCACAACGACAAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34779658 AGCTACAACGGTGAACCTTG-TTTCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * ** * * *
34779693 AATTAAAAAGATTCAAGCCACAATGATGAATCTTACTTCCCTGGCCGCGCAGTGGAACAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34779758 AACTACAACGGTGAATCTTGCTC-CACGACATTAC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * *
34779792 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTTCCTGGCGGTACAGTGGAGCAGAGTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
***
34779857 AGCTACAACGACAAATCTTGCT-TCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * * * * * * *
34779892 AATTAAAAAGATTAAAACCACAACGGCAAATCTTAGTTCCCTAGCGGTGTAGAGGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
*
34779957 AGCTACAACGGTGAATCTGGCTC-CCCTGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * * * * *
34779992 AATTAAAAAGATTGGAGCCATAACGGCGAATCTTACTTCCCTGGTGGTGGAGTGGAACATATTAA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34780057 AGCTACAACGGTGAATCTT-ATTTCCCTGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * * *
34780092 TATTAAAAAGATTGAAGCCACAATGGTG-A----A--T--CTGGCGGTGCAGTGGAACATATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34780148 AGCTACAACAGCGAACCTTGCTC-CACGACATTCC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * ** * * **
34780182 AATTAAAAAGATTAAAACCACAATGGTAAATCTTACTTCCCTAGTGGTGCAGTGGAGTAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34780247 AGCTACAACGGTGAATCTTGTTTCTCCC-ACATTGT
66 AGCTACAACGGTGAATCTTG-CTCTCCCGACATTGC
* * * * * *
34780282 AATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTTCCTGGCGGAGCAGTGGAACAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * ** *
34780347 AGCTACAACGGTAAATCTTACT-TCCTAAACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCC-CGACATTGC
* * * * * * * *
34780382 AATTAAAAATACTGAGGCTAGAACGGTGAATCTTACTTCCCTGACGGTGCAGTGGAACAGATTCA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34780447 AGCTAGAACGGTGAATCTT-ATTTCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * * ** * * * * *
34780482 AATTAAAAATATTAAAG-AACAGTGTCGAATCTTACTTCCCTAGCGATGCAGTGGAGCAGATCGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
34780546 AGCTACAACGGCGAATCTGGCTC-CCTCGATATTGA
66 AGCTACAACGGTGAATCTTGCTCTCC-CGACATTGC
* * * * *
34780581 AATTAAAAAGATTGAAGCCAGAGCAGCGAATCTTACTTCCCTGGAGGTGAAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34780646 AGCTATAATGGTGAATCTTG-TTTCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * * * * *
34780681 AATTAAAAAGATTGAAACCACAATGGCGAATCTTACTTCCCTGGCTGTACAATGGAACAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
34780746 AGGTACAACGGGGAATCTTACTC-CACGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* *
34780780 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
** * * *
34780845 AGCTACAAAAGCGAATCTTGCT-GCACGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * *
34780879 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCATATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34780944 AGCTACAACGATGAATCTGGCTC-CCTCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCC-CGACATTGC
* * * * *
34780979 AATTAAAAA-ATTTGAAGCTACAACGGTGAATCTTACTTCCCTGACGGTACAGTAGAACAGA-TG
1 AATTAAAAAGA-TTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * *
34781042 CAAGCTACAACGATGAATCTGGCTGC-CCCAACATTGC
65 -AAGCTACAACGGTGAATCTTGCT-CTCCCGACATTGC
* * * * * *
34781079 AATTAAAAAGATTGAAG--ACAACTGTGAATCTTACTTCCCTTGCAGTGCAGTAGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34781142 AGCTACAACGTTGAATCTT-ATTTGCCTGACATTGT
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * *
34781177 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTAA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
**** * *
34781242 AGCTACAACAACAAATCTTGCTC-CACGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * *
34781276 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTTGAGA-AGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA-ACAGATTG
* *
34781340 AAGCTACAATGGTGAATCTGGCTCTCCCGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * *
34781376 AATTAAAAAGATTAAAGCCACAACGG-TATATCTTACTTCCCTGGCGGTACAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGA-ATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* *
34781440 AAGCTACAACGGAGAATCTT-CTTTCCCTGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * * * * *
34781476 AATTAAAAAGATTCAAGCCACAATGACGAATCTTACTTCCCTGGCAGTGCAGTGGAAAAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
34781541 CGCTACAATGGTGAATCTTGCTC-CACGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * *
34781575 AATTAAAAAGATGGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTTGAGA-AGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA-ACAGATTG
* *
34781639 AAGCTACAACGGAGAATCTT-CTTTCCCTGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * * * * *
34781675 AATTAAAAAGATTCAAGCCACAATGACGAATCTTACTTCCCTGGCAGTGCAGTGGAAAAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
34781740 CGCTACAATGGTGAATCTTGCTC-CACGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * *
34781774 AATTAAAAAGATGGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTTGAGA-AGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA-ACAGATTG
* *
34781838 AAGCTACAACGGAGAATCTT-CTTTCCCTGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * * * * *
34781874 AATTAAAAAGATTCAAGCCACAATGACGAATCTTACTTCCCTGGCAGTGCAGTGGAAAAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
34781939 CGCTACAATGGTGAATCTTGCTC-CACGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * *
34781973 AATTAAAAAGATGGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTTGAGA-AGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGA-ACAGATTG
* *
34782037 AAGCTACAACGGAGAATCTT-CTTTCCCTGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * * * * *
34782073 AATTAAAAAGATTCAAGCCACAATGACGAATCTTACTTCCCTGGCAGTGCAGTGGAAAAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
34782138 CGCTACAATGGTGAATCTTGCTC-CACGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * *
34782172 AATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTACAGTGGAATAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
*
34782237 AGCTACAACGGTGAATCTT-CTTTCCCTGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * * * * *
34782272 AATTAAAAAGATTCAAGCCACAATGACGAATCTTACTTCCCTGGCAGTGCAGTGGAAAAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34782337 AGCTACAATGGTGAATCTTGCTC-CACGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * *
34782371 AATTAAAAAGATTTAAGCCACAACAGCGAATCTTACTTTCCTGGCGGTGCAGTGGAGCAGAGTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
*** * *
34782436 AGCTACAACGACAAATCTTACT-TCCCCGACATTGG
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * * * *
34782471 AATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTAGCGGTGTAGGGGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34782536 AGCTACAACAGTGAATCTTACT-TCCCTGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * ** * * *
34782571 TATTAAAAAGATTGAAGCCACAATGGTAAATCTTACTTCTCTCGCGGTGCAGTGGAACATATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34782636 AGCTACAACAGCGAACCTTGCTC-CACGACATTCC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * **
34782670 AATTAAAAAGATTGAAACCACAATGGTGAATCTTACATCCCTGGCGGTGCAGCGGAGTAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
** *
34782735 AGCTACAACGGTGAATCTTATTTCTCCC-ACATTGT
66 AGCTACAACGGTGAATCTT-GCTCTCCCGACATTGC
* * * *
34782770 AATTAAAAAGATTGAAACCACAATGGGGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* ** *
34782835 AGCTACAACGGTAAATCTTGCT-TCCTAAACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCC-CGACATTGC
* * * * * * * *
34782870 AATTAAAAATACTGAGGCTACAACGGTGAATCTTACTTCCCTGACGGCGCAGTGGAACAGATTCA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34782935 AGCTAGAACGGTGAATCTT-ATTTCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * * ** * * * * *
34782970 AATTAAAAATATTAAAG-AACAGTGGCGAATCTTACTTCCCTAGCGATACAGTGGAGCAGATCGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34783034 AGCTACAACGGTGAATCTGGCTC-CCTCGACATTGA
66 AGCTACAACGGTGAATCTTGCTCTCC-CGACATTGC
* * * * * *
34783069 AATTAAGAAGATTGAAGCCAGAGCAGCGAATCTTACTTCCCTGGAGGTGCAGTGGAATAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34783134 AGCTATAACGGTGAATCTTG-TTTCCCGGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * *
34783169 AATTAAAAAGATTGAAGCCACAATGACGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34783234 AGCTACAACGGCGAATCTTGCTC-CACGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * ** * * *
34783268 AATTAAAAAGATTGAAGGCACAACGGTGAATCTTACTTCCCTGGTAGTACAGTGGAACAAATTGC
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34783333 AGGTACAACGGGGAATCTTGCTC-CACGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* ** ** * *
34783367 AATTAAAAA-ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGTAGTATACTGGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34783431 AGCTACAACGATGAATCTGGCTC-CCTCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCC-CGACATTGC
* * * *
34783466 AATTAAAAAGTTTGAAGCCACAACGACGAATCTTACCTCCCTGGCGGTGCAGTGGAACA-AATGC
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-
* * *
34783530 AAGCTACAACGATGAATCTGGCTAC-CCCAACATTGC
65 AAGCTACAACGGTGAATCTTGCT-CTCCCGACATTGC
* * * * * *
34783566 AATTAAAAAGATTGAAGCCACAACTGTGAATCTTGCTTCCCTTGCAGTGCAGTGGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
34783631 AGCTACAACGGTGAAACTT-ATTTCCCTGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * *
34783666 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAACA-AATGC
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG-
* *
34783730 AAGCTACAACGATGAATCTGGCTC-CCTCGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCC-CGACATTGC
* ** * * *
34783766 AATTAAAAAGTTTGAAGCCGTAACGACGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34783831 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
** * * *
34783866 AATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34783931 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
** * * *
34783966 AATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34784031 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
** * * *
34784066 AATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34784131 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
** * * *
34784166 AATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34784231 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
** * * *
34784266 AATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34784331 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
** * * *
34784366 AATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34784431 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
** * * *
34784466 AATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34784531 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
** * * * * *
34784566 AATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTCCCTAGCAGCGCAGTGGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
*** ** * * *
34784631 AGCGGTAACGGCAAATCTGGCTCCCCCGACATTGA
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * ** * *
34784666 AATGAAAAAGATTGAAGCCAGAACATCGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34784731 AGTTACAACGGTGAATTTTG-TTTCGTCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
* * * *
34784766 AATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* ** *
34784831 AACTACAACGGCAAATCTTGCT-TCCCCGACATTGT
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * * *
34784866 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTTCTTCCCTGGAGGTGTAGTGGAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34784931 AGCTACAACGCTGAATCTTG-TTTCCCTGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* ** * * * * *
34784966 AATTAAAATGATTGAAGCCACAACAACGAATCTTACTTCTCTGGCGGTGCAATGGAGCATATTAA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34785031 AGCTACAACGATGAATCTGGCTGC-CCCGACATTGC
66 AGCTACAACGGTGAATCTTGCT-CTCCCGACATTGC
* * ** *
34785066 AATTAAAAAGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGCACT-G----GA---A
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
34785123 AGCTACAACGGTAAATCTT-ATTTCCCTGACATTGT
66 AGCTACAACGGTGAATCTTGCTCTCCC-GACATTGC
* * * * * *
34785158 AATTAAAAAGATTGAAGCTACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAATAAATTTA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *** *
34785223 AGCTACAACGGTGAGTCTTACT-TCTTAAACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
* * * * * * *
34785258 AATTAAAAAGATTGAAGTCACAATGGCGAATCTTACTTCTCTGGCGGTGCAATGGAGCATATTAA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34785323 AGCTACAACGATGAATCTGGCTGC-CCCGACATTGC
66 AGCTACAACGGTGAATCTTGCT-CTCCCGACATTGC
* * * * *
34785358 AATTAAAAAGATTGAAGCCATAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATAAATTTA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *** *
34785423 AGCTACAACGGTGAATCTTACT-TCTTAAACATTGT
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
* * * * * *
34785458 AATTAAAAAGATTGAAGCTACAATGGCAAATCTTACTTCCCTGGCAGCGCAGTGGAACAGATTCA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* ** * * *
34785523 AGCTACAACGGTGCATCTTATTTTCCCCACATTTC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * *
34785558 AATTAAAAATATTGAAGCCACAACGACGAATCTTACTTCTCTGGCGGTGCAGTGGAGCAGATCGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * *
34785623 AGCTACATCGGCGAATCTGGCTCCCCCGACATTAC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34785658 AATTAACAAGATTTAAGCCACAACGGTGAATCTTACTTCCTTGGCGGTGCAGTGAAACAGGTTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34785723 AGCTACAACGGTGAATCTT-ATTTCCCCGATATTGC
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * * * *
34785758 AATTAAAAATATTGAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34785823 AGATACAACAGG-GAATCTTGCTC-CACGACATTGC
66 AGCTACAAC-GGTGAATCTTGCTCTCCCGACATTGC
* * ** * *
34785857 AATTAAAAAGATTGAAGGCACAACGGCGAATCTTACTTCCCTGGCAGTATAGTAGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
** * *
34785922 AGCTGTAACGATGAATCTGGCTCTCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * *
34785957 AATTAAAAAGTTTAAAGCCACAACGACGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * * * *
34786022 AACTACAACAGCGAATCTTGCTC-CACGATATTAC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * * * *
34786056 AATTAAAAAGATTAAACCCACAGCGGCAAATCTTACTTGCCTGGCGGTGTAGTGGAGCATATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34786121 AGCTACAACAGTGAATCTTG-TTTCCCCGACAATGC
66 AGCTACAACGGTGAATCTTGCTCT-CCCGACATTGC
* * * * * *
34786156 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34786221 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34786256 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34786321 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34786356 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34786421 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34786456 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34786521 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34786556 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34786621 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34786656 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34786721 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34786756 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34786821 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34786856 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34786921 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34786956 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34787021 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * * *
34787056 AATTAAAAAGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAATAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGAATC-TTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * * *
34787121 AAACTACAACAGCGAATCTTGCTC-CACGACATTGC
65 AAGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * ** *
34787156 AATTAAAAA-ATTGAAGCCACAATGGCGAATCCTACTTTCCTGGCGGTATAGTGGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34787220 AGCTACAACGATGAATCTGGCTCCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* ** * * *
34787255 AATTAAAAAGTTTGAAGTGACAACGGCGAATCTTACTTCCCTAGCGGTACAGTGGAACAGATTCA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34787320 AGCTACAACGATGAATCTGGCTGC-CCCGACATTGC
66 AGCTACAACGGTGAATCTTGCT-CTCCCGACATTGC
* * * * ** **
34787355 AATTAAAAA-ATTAAAGCCACAATGGCGAATCCTACTTTCCTGGCGGTATAGTGGCGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34787419 AGCTACAACGATGAATCTGGCTCCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * ** **
34787454 AATTAAAAA-ATTAAAGCCACAATGGCGAATCCTACTTTCCTGGCGGTATAGTGGCGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34787518 AGCTACAACGATGAATCTGGCTCCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * ** **
34787553 AATTAAAAA-ATTAAAGCCACAATGGCGAATCCTACTTTCCTGGCGGTATAGTGGCGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34787617 AGCTACAACGATGAATCTGGCTCCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * ** **
34787652 AATTAAAAA-ATTAAAGCCACAATGGCGAATCCTACTTTCCTGGCGGTATAGTGGCGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34787716 AGCTACAACGATGAATCTGGCTCCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * * ** **
34787751 AATTAAAAA-ATTAAAGCCACAATGGCGAATCCTACTTTCCTGGCGGTATAGTGGCGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34787815 AGCTACAACGATGAATCTGGCTCCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
** * ** * * *
34787850 AATTAAAAAGATTGAAGCCACAACAACAAATCTTACTTCCCTAACGGTGCAATGGATCAGATCGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34787915 AGCTACAACGGTGAATCTGGCTC-CTCCGATATTGC
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
* *
34787950 AATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
34788015 AGCTACAACGGTGAATCTTG-TTTCTCCGACATTAC
66 AGCTACAACGGTGAATCTTGCTCTC-CCGACATTGC
* * * *
34788050 AATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * **
34788115 AGGTACAACGGGGAATCTTGCTC-CATGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* ** *
34788149 AATTAAAAA-ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTGGAGCAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *
34788213 AGCTACAACGATGAATCTGGCTCCCCCGACATTGC
66 AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
* * * *
34788248 AATCAAAAAGTTTTAAGCAACAAC
1 AATTAAAAAGATTGAAGCCACAAC
34788272 NNNNNNNNNN
Statistics
Matches: 7523, Mismatches: 1015, Indels: 282
0.85 0.12 0.03
Matches are distributed among these distances:
90 31 0.00
91 45 0.01
92 70 0.01
93 2 0.00
95 3 0.00
97 3 0.00
98 278 0.04
99 1891 0.25
100 5098 0.68
101 101 0.01
102 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (100 bp):
AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
AGCTACAACGGTGAATCTTGCTCTCCCGACATTGC
Found at i:34780203 original size:90 final size:91
Alignment explanation
Indices: 34780032--34780214 Score: 226
Period size: 90 Copynumber: 2.0 Consensus size: 91
34780022 TCTTACTTCC
* * * * * ** * *
34780032 CTGGTGGTGGAGTGGAACATATTAAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCTATTA
1 CTGGCGGTGCAGTGGAACATATTAAAGCTACAACAGCGAACCTTAGCTCCCTGACATTCCAATTA
* * *
34780097 AAAAGATTGAAGCCACAATGGTGAAT
66 AAAAGATTAAAACCACAATGGTAAAT
*
34780123 CTGGCGGTGCAGTGGAACATATTGAAGCTACAACAGCGAACCTT-GCTCCAC-GACATTCCAATT
1 CTGGCGGTGCAGTGGAACATATTAAAGCTACAACAGCGAACCTTAGCTCC-CTGACATTCCAATT
34780186 AAAAAGATTAAAACCACAATGGTAAAT
65 AAAAAGATTAAAACCACAATGGTAAAT
34780213 CT
1 CT
34780215 TACTTCCCTA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
90 39 0.50
91 39 0.50
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (91 bp):
CTGGCGGTGCAGTGGAACATATTAAAGCTACAACAGCGAACCTTAGCTCCCTGACATTCCAATTA
AAAAGATTAAAACCACAATGGTAAAT
Found at i:34783481 original size:50 final size:50
Alignment explanation
Indices: 34783424--34783783 Score: 191
Period size: 50 Copynumber: 7.2 Consensus size: 50
34783414 ATACTGGAGC
34783424 AGATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAA
* * * ** * ** * * *
34783474 AGTTTGAAGCCACAACGACGAATCTTACCTCCCT-GGCGGTGCAGTGGAACA
1 AGATTGAAGCTACAACGATGAATC-TGGCTCCCTCGACATTGCAAT-TAAAA
*
34783525 A-A-TGCAAGCTACAACGATGAATCTGGCTACCC-CAACATTGCAATTAAAA
1 AGATTG-AAGCTACAACGATGAATCTGGCT-CCCTCGACATTGCAATTAAAA
* * * * * ** **
34783574 AGATTGAAGCCACAACTG-TGAATCTTGCTTCCCTTG-CAGTGCAGTGGAGC
1 AGATTGAAGCTACAAC-GATGAATCTGGC-TCCCTCGACATTGCAATTAAAA
* * *** *
34783624 AGATTGAAGCTACAACGGTGAAACTTATTTCCCT-GACATTGTAATTAAAA
1 AGATTGAAGCTACAACGATGAATC-TGGCTCCCTCGACATTGCAATTAAAA
* * ** ** * * ** * * *
34783674 AGATTGAAGCCACAATGGCGAATCTTACT-TCTCTGGCGGTGCAGTGGAACA
1 AGATTGAAGCTACAACGATGAATCTGGCTCCCTC-GACATTGCAAT-TAAAA
34783725 A-A-TGCAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAA
1 AGATTG-AAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAA
*
34783774 AGTTTGAAGC
1 AGATTGAAGC
34783784 CGTAACGACG
Statistics
Matches: 216, Mismatches: 74, Indels: 40
0.65 0.22 0.12
Matches are distributed among these distances:
48 2 0.01
49 19 0.09
50 170 0.79
51 25 0.12
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (50 bp):
AGATTGAAGCTACAACGATGAATCTGGCTCCCTCGACATTGCAATTAAAA
Found at i:34784828 original size:50 final size:50
Alignment explanation
Indices: 34784674--34787328 Score: 409
Period size: 50 Copynumber: 53.3 Consensus size: 50
34784664 GAAATGAAAA
* * * * *
34784674 AGATTGAAGCCAGAACATCGAATCTTACTTCCCTGACGGTGTAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
** * * ** * * * ** * ** *
34784724 AGATTGAAGTTACAACGGTGAAT-TTTGTTTCGTCGACATTGTAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCT-GGCGGTGCAATGGAAC
* * * *
34784774 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTACAGTGGAGC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * * * * ** * ** *
34784824 AGATTGAAACTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * *
34784874 AGATTGAAGCCACAACAGCGAATCTTTCTTCCCTGGAGGTGTAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* ** * ** * *
34784924 AGATTGAAGCTACAAC-GCTGAATCTTGTTTCCCTGACATTGCAAT-TAAA
1 AGATTGAAGCCACAACAGC-GAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * *
34784973 ATGATTGAAGCCACAACAACGAATCTTACTTCTCTGGCGGTGCAATGGAGC
1 A-GATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** * * * ** ** *
34785024 ATATTAAAGCTACAAC-GATGAATCTGGCTGCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACAG-CGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * ** *
34785074 AGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGCACT-G---
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * ** * * ** * ** *
34785120 -GA---AAGCTACAACGGTAAATCTTATTTCCCTGACATTGTAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* ** * * *
34785166 AGATTGAAGCTACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * * * * ** ** * ** *
34785216 AAATTTAAGCTACAACGGTGAGTCTTACTT-CTTAAACATTGTAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCT-GGCGGTGCAATGGAAC
* ** * *
34785266 AGATTGAAGTCACAATGGCGAATCTTACTTCTCTGGCGGTGCAATGGAGC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** * * * ** ** *
34785316 ATATTAAAGCTACAAC-GATGAATCTGGCTGCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACAG-CGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* ** * *
34785366 AGATTGAAGCCATAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * * * ** ** * ** *
34785416 AAATTTAAGCTACAACGGTGAATCTTACTT-CTTAAACATTGTAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCT-GGCGGTGCAATGGAAC
* ** * * * *
34785466 AGATTGAAGCTACAATGGCAAATCTTACTTCCCTGGCAGCGCAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * * * ** ** * ** *
34785516 AGATTCAAGCTACAACGGTGCATCTTATTTTCCC-CACATTTCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTA-CTTCCCTGGCGGTGCAATGGAAC
* * * *
34785566 ATATTGAAGCCACAAC-GACGAATCTTACTTCTCTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACAG-CGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** * * * ** * *
34785616 AGATCGAAGCTACATCGGCGAATCTGGCTCCCCCGACATTACAAT-TAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * * *
34785665 AAGATTTAAGCCACAACGGTGAATCTTACTTCCTTGGCGGTGCAGTGAAAC
1 -AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * * * * **** ** *
34785716 AGGTTGAAGCTACAACGGTGAATCTTATTTCCCCGATATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * ** * *
34785766 ATATTGAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* ** * * * ** ** *
34785816 AAATTGAAGATACAACAGGGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * * ** * * *
34785865 AGATTGAAGGCACAACGGCGAATCTTACTTCCCTGGCAGTATAGTAGAGC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
*** * ** * ** ** *
34785915 AGATTGAAGCTGTAAC-GATGAATCTGGCTCTCCC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAG-CGAATCTTACT-TCCCTGGCGGTGCAATGGAAC
* * * * *
34785965 AGTTTAAAGCCACAAC-GACGAATCTTACTTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAG-CGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * **** * ** *
34786015 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GATATTACAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * * * * * * * *
34786064 AGATTAAACCCACAGCGGCAAATCTTACTTGCCTGGCGGTGTAGTGGAGC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * * ** * * ** ** *
34786114 ATATTGAAGCTACAACAGTGAATCTTGTTTCCCCGACAATGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * ** * * * *
34786164 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34786215 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34786264 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34786315 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34786364 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34786415 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34786464 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34786515 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34786564 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34786615 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34786664 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34786715 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34786764 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34786815 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34786864 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34786915 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34786964 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** ** *
34787015 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAATTAAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* * ** * * * *
34787064 AGATTAAAGCCAAAATGGCGAATCTTTAATTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCCACAACAGCGAATC-TTACTTCCCTGGCGGTGCAATGGAAC
* * * * ** * *
34787115 AGATTGAAACTACAACAGCGAATCTTGC-TCCAC-GACATTGCAAT-TAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAATGGAAC
* ** * * ** * *
34787163 AAATTGAAGCCACAATGGCGAATCCTACTTTCCTGGCGGTATAGTGGAGC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* * ** * * * ** ** *
34787213 AGATTGAAGCTACAAC-GATGAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACAG-CGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* ** * * * *
34787263 AGTTTGAAGTGACAACGGCGAATCTTACTTCCCTAGCGGTACAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
* *
34787313 AGATTCAAGCTACAAC
1 AGATTGAAGCCACAAC
34787329 GATGAATCTG
Statistics
Matches: 1701, Mismatches: 823, Indels: 162
0.63 0.31 0.06
Matches are distributed among these distances:
42 30 0.02
45 2 0.00
47 2 0.00
48 24 0.01
49 372 0.22
50 948 0.56
51 323 0.19
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAAC
Found at i:34787867 original size:50 final size:50
Alignment explanation
Indices: 34787808--34788271 Score: 254
Period size: 50 Copynumber: 9.3 Consensus size: 50
34787798 ATAGTGGCGC
* * * * *
34787808 AGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATGAAAA
* **** * * ** * **
34787858 AGATTGAAGCCACAACAACAAATCTTACTTCCCTAACGGTGCAATGGATC
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATGAAAA
* * * * *
34787908 AGATCGAAGCTACAACGGTGAATCTGGC-TCCTCCGATATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGACATTGCAATGAAAA
* * * * * ** * * *
34787958 ATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATGAAAA
* * * *
34788008 AGGTTGAAGCTACAACGGTGAATCTTGTTTCTCC-GACATTACAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTGCTTC-CCTGACATTGCAATGAAAA
* * * * * * *
34788058 AGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACA
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAAT-GAAAA
* * * *
34788109 A-ATTGAAGGTACAACGGGGAATCTTGC-TCCATGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATGAAAA
* * * * * ** ** * * **
34788157 A-ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTGGAGC
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATGAAAA
* * * * *
34788206 AGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACATTGCAATCAAAA
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATGAAAA
* * *
34788256 AGTTTTAAGCAACAAC
1 AGATTGAAGCTACAAC
34788272 NNNNNNNNNN
Statistics
Matches: 287, Mismatches: 120, Indels: 14
0.68 0.29 0.03
Matches are distributed among these distances:
48 25 0.09
49 28 0.10
50 225 0.78
51 9 0.03
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATGAAAA
Found at i:34789062 original size:48 final size:50
Alignment explanation
Indices: 34788937--34789070 Score: 137
Period size: 48 Copynumber: 2.7 Consensus size: 50
34788927 NNNNNNNNNN
* * * *
34788937 AAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGG
1 AAAAA-ATTGAAGCCACAATGGCGAATCTTACTTCCATGACAGTGCAATGG
* ** * * * * *
34788988 AACAAATTGAAGGTACAACGGGGAATCTTGC-TCCATGACATTGCAAT-T
1 AAAAAATTGAAGCCACAATGGCGAATCTTACTTCCATGACAGTGCAATGG
34789036 AAAAAATTGAAGCCACAATGGCGAATCTTACTTCC
1 AAAAAATTGAAGCCACAATGGCGAATCTTACTTCC
34789071 CTGGCGGTAT
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
48 25 0.38
49 15 0.23
50 21 0.32
51 4 0.06
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (50 bp):
AAAAAATTGAAGCCACAATGGCGAATCTTACTTCCATGACAGTGCAATGG
Found at i:34789185 original size:100 final size:100
Alignment explanation
Indices: 34788937--34791658 Score: 2965
Period size: 100 Copynumber: 27.3 Consensus size: 100
34788927 NNNNNNNNNN
* * * *
34788937 AAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGGT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * *
34789002 ACAACGGGGAATCTTGCT-CCATGACATTGCAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * ** *
34789036 AAAAA-ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTGGAGCAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * *
34789100 ACAACGATGAATCTGGCTCCCCTGATAATGCAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * *
34789135 AAAAAGTTTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTCAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34789200 ACAACGATGAATCTGGCTCCCCTGATAATGCAATA
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * *
34789235 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTCAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34789300 ACAACGATGAATCTGGCTCCCCTGATAATGCAATA
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * *
34789335 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTCAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34789400 ACAACGATGAATCTGGCTCCCCTGATAATGCAATA
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * *
34789435 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTCAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34789500 ACAACGATGAATCTGGCTCCCCTGATAATGCAATA
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * *
34789535 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTCAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34789600 ACAACGATGAATCTGGCTCCCCTGATAATGCAATA
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * *** *
34789635 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGCATAGTGGAGCAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * * *
34789700 ATAACGGTAAATCTTGCCTCCCC-GACATTGTAAGT
66 ACAACGGTGAATC-TGGCTCCCCTGACATTGCAATT
* * ** * * *
34789735 AAAAAGATTAAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAGCAAATTGAAGCG
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * * * *
34789800 AAAACGGTGAATCTTGCTCCAC-AATATTACAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * ** * *
34789834 AAAAAGATTGATGCCACAACAGTGAATCTTACTTCCCTGTTGGTACAGTGGAGCAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34789899 ATAACGGTAAATCTTGCCTCCCC-GACATTGTAATT
66 ACAACGGTGAATC-TGGCTCCCCTGACATTGCAATT
* * * * *
34789934 AAAAAGATTAAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGCAGTGGAATAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* **
34789999 ACAACGTTGAATCTTGTTTCCCC-GACATTGCAATT
66 ACAACGGTGAATC-TGGCTCCCCTGACATTGCAATT
* ** * * *
34790034 AAAAAGATTGAAGCCACAACAGCAAATCCTACTTCCCTGGC-GTGCAATGGAGCAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
**
34790098 ACAACGGTGAATCTGGCTCCCCCAACATTGCAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * *
34790133 AAAAAGATTGAAGCCATAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACTGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* *** * *
34790198 ACAACGGTAAATCTTATTTCCCTGACATTGCTATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * ** * * *
34790233 AAAAAGATTGAAGCCACAATGGCGAATCTTACTTCTTTAGAGATGCAGTGGAACAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
** * * *
34790298 ACAAAAGTGAATCTTGCT-CCATGACATTGTAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * *
34790332 AAAAAGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* ** *** *
34790397 AAAACGGTGAATCT-TATTTTCTCGACATTGAAATT
66 ACAACGGTGAATCTGGCTCCCCT-GACATTGCAATT
* * * * *
34790432 AAAAAGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGAAACAAATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
** ** ** * *
34790497 ACAACGGCAAATCTCACT-TTCTAAACATTGTAATT
66 ACAACGGTGAATCTGGCTCCCCT-GACATTGCAATT
* * * * *
34790532 AAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGGCAGCGAAGTGGAACAGATTCAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34790597 ACAACGGTGAATCTGGCTCCCCCGACAATGAAATG
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * * *
34790632 AAAAAGATTGAAGCCAGAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34790697 ACAACGGTGAATCTGGCTCCCCCGACAATGAAATG
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * * * *
34790732 AAAAAGATTGAAGCCAGAACAGCGAATCTTACTTCCCTGGCGGCGCAGTGGAATAGATTGGAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* ** *
34790797 ACAACGGTGAATTTTGTTTCGCC-GACATTGCAATT
66 ACAACGGTGAA-TCTGGCTCCCCTGACATTGCAATT
* *** * *
34790832 AAAAAGATTGAAGCCACAATGACAAATCTTACTTCCTTGGCGGTGCAGTGGAACAAATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* ** * * *
34790897 ACAATGGCCAATTTTGCTCCAC-GACATTGCAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* *
34790931 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
** * * *
34790996 ACAACGGCAAATCTTGCTTGCCC-GACATTGTAATT
66 ACAACGGTGAATCTGGC-TCCCCTGACATTGCAATT
* * ** * * * ** *
34791031 AAAAAGATAGAAACCACAATAGCGAATCTTAGTTCCCTGGAGGTATAGTGGAATAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * * *
34791096 ACAACGCTGAATCTTGTTTCCCTTACATTGCAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * * * * * *
34791131 AAAATGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCAGTGCAATGGAGCATATTAAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* *
34791196 AGAACGATGAATCTGGCTGCCCC-GACATTGCAATT
66 ACAACGGTGAATCTGGCT-CCCCTGACATTGCAATT
* **
34791231 AAAAAGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGCAGTGGAACAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * * *
34791296 ACAACGGTGAATCTTGTTTCTCTGACATTGTAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* **
34791331 AAAAAGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGCAGTGGAACAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * * *
34791396 ATAACGGTAAATCTTGCTCCAC-GACATTGTAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * * *
34791430 AAAAAGATTGAAGCCATAACGGTGAATCTTACTTCCCTGGCGATGTACTGGAGCAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
34791495 ACAACAGCGAATCTGGCTTCCCAGACATTGCAATT
66 ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
* * * * *
34791530 AAAAAGATTGAAGTCACAACGGTGAATCTTACTTCCTTGGCAGTGTAGTGGAATAGATTGAAGCT
1 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
** *
34791595 ACAACGGTGAATCTTGTTTCCCC-GAAATTGCAATT
66 ACAACGGTGAATC-TGGCTCCCCTGACATTGCAATT
*
34791630 AAAAAGATTGAAGCCATAACGGTGAATCT
1 AAAAAGATTGAAGCCACAACGGTGAATCT
34791659 GGCTCCCCCG
Statistics
Matches: 2283, Mismatches: 323, Indels: 33
0.87 0.12 0.01
Matches are distributed among these distances:
98 75 0.03
99 442 0.19
100 1740 0.76
101 26 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (100 bp):
AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
ACAACGGTGAATCTGGCTCCCCTGACATTGCAATT
Found at i:34791733 original size:449 final size:449
Alignment explanation
Indices: 34789389--34792107 Score: 1459
Period size: 449 Copynumber: 6.1 Consensus size: 449
34789379 GCAGTGGAAC
* * * * * * * * *
34789389 AGATTCAAGCTACAACGATGAATCTGGCTCCCCTGATAATGCAATAAAAAAGTTTAAAGCCACAA
1 AGATTAAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * *
34789454 CGGTGAATCTTACTTCCCT-AGCGGTGCAGTGGAACAGATTCAAGCTACAACGATGAATCTGGCT
66 CTGTGAATCTTACTTCCCTGA-CAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* * * * * * ** * *
34789518 CCCCTGATAATGCAATAAAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAG
130 TCCCTGACATTGCAATTAAAAAGATTAAAGCCACAATGGTGAAAATTACTTCCCTGGCAGTGCAG
* * * * * * * * * *
34789583 TGGAACAGATTCAAGCTACAACGATGAATCTGGCTCCCCTGATAATGCAATAAAAAAGTTTAAAG
195 TGGAACAGATTGAAGCTACAACGGTAAATCTTGCTCCAC-GACATTGCAATTAAAAAGATTGAAG
* * *** * * * **
34789648 CCACAACGGTGAATCTTACTTCCCTGGCGGCATAGTGGAGCAGATTGAAGCTATAACGGTAAATC
259 CCACAACGGGGAATCTTACTTCACTGGCGATGTACTGGAGCAGATTGAAGCTACAACAGCGAATC
* * * * * * ** * *
34789713 TTGCCTCCCCGACATTGTAAGTAAAAAGATT-AAAGCCACAATGGCAAATCTTACTTCCCTGGCG
324 TGGCTTCCCAGACATTGCAATTAAAAAGATTGAAA-CCACAACGGTGAATCTTACTTCCTTGGCA
* * * * * * *
34789777 GTGCAGTGGAGCAAATTGAAGCGAAAACGGTGAATCTTGC-TCCACA-ATATTACAATTAAAA
388 GTGCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CAGAAATTGCAATTAAAA
* * * ** * * **** * * ** ** * *
34789838 AGATTGATGCCACAACAGTGAATCTTACTTCCCTGTTGGTACAGTGGAGCAGATTGAAGCTATAA
1 AGATTAAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * * * ** * * * * * **
34789903 CGGTAAATCTTGCCTCCCCGACATTGTAATTAAAAAGATTAAAGCCACAACAGCGAATCTTACTT
66 CTGTGAATCTTACTTCCCTGACAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
**** * ** * * * * * ** ** * * * *
34789968 CCCTGGTGGTGCAGTGGAATAGATTGAAGCTACAACGTTGAATCTTGTTTCCCCGACATTGCAAT
131 CCCTGACATTGCAATTAAAAAGATTAAAGCCACAATGGTGAAAATTACTTCCCTGGCAGTGCAGT
** * * * * * * * * ** **
34790033 TAAAAAGATTGAAGCCACAACAGCAAATCCTACTTCC-CTGGC-GTGCAATGGAGCAGATTGAAG
196 GGAACAGATTGAAGCTACAACGGTAAATCTTGC-TCCAC-GACATTGCAATTAAAAAGATTGAAG
* * ** * * *** * * ** ** * * *
34790096 CTACAACGGTGAATCTGGCTCCCCCAAC-ATTGCAATTAAAAAGATTGAAGCCATAACGGCGAAT
259 CCACAACGGGGAATCTTACTTCACTGGCGA-TGTACTGGAGCAGATTGAAGCTACAACAGCGAAT
** * * ** * ** ** * * * * * *
34790160 CTTACTTCCCTGGCGGTGCAGTGGAACTGATTGAAGCTACAACGGTAAATCTTATTTCCCTGACA
323 CTGGCTTCCCAGACATTGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTTCCTTGGCA
* * * * * * * ** * * ** *
34790225 TTGCTATTA-AAAAGATTGAAGCCACAATGGCGAATCTTACTTCTTTAGAGA-TGCAGTGGAAC
388 GTGC-AGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCAGAAATTGCAATTAAAA
* * ** * ** * *
34790287 AGATTGAAGCTACAAAAGTGAATCTTGCT-CCATGACATTGTAATTAAAAAGATTGAAACCACAA
1 AGATTAAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
34790351 -TGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAGCAGATTGAAGCTAAAACGGTGAATCTTATT
66 CT-GTGAATCTTACTTCCCTGACAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* * **
34790415 T-TCTCGACATTGAAATTAAAAAGATTGAAA-CCACAATGGTGAATCTTACTTCCCTGGCAGTGC
130 TCCCT-GACATTGCAATTAAAAAGATT-AAAGCCACAATGGTGAAAATTACTTCCCTGGCAGTGC
* * * ** * * *
34790478 AGTGAAACAAATTGAAGCTACAACGGCAAATCTCACTTTCTA-AACATTGTAATTAAAAAGATTG
193 AGTGGAACAGATTGAAGCTACAACGGTAAATCTTGC--TCCACGACATTGCAATTAAAAAGATTG
* * * * * * * * * *
34790542 AAGCTACAACGGTGAATCTTACTTCCCTGGC-AGCGAAGTGGAACAGATTCAAGCTACAACGGTG
256 AAGCCACAACGGGGAATCTTACTTCACTGGCGA-TGTACTGGAGCAGATTGAAGCTACAACAGCG
* * * * * * * * * * *
34790606 AATCTGGCTCCCCCGACAATGAAATGAAAAAGATTGAAGCCAGAACAGCGAATCTTACTTCCCTA
320 AATCTGGCTTCCCAGACATTGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTTCCTTG
* * * * * * * *
34790671 GCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACAA-TGAAATGAAA
385 GCAGTGCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGA-AATTGCAATTAAA
34790735 A
449 A
* * * * ** * * * *** * ** * * *
34790736 AGATTGAAGCCAGAACAGCGAATCTTACTTCCCTGGCGGCGCAGTGGAATAGATTGGAGCTACAA
1 AGATTAAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** * * ** * * * *** **
34790801 CGGTGAATTTTGTTTCGCC-GACATTGCAATTAAAAAGATTGAAGCCACAATGACAAATCTTACT
66 CTGTGAATCTTACTTC-CCTGACAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* * ** * * * * * ** ** * * *
34790865 TCCTTGGCGGTGCAGTGGAACAA-ATTGAAGCTACAATGGCCAATTTTGC-TCCAC-GACATTGC
130 TCCCTGACATTGCAAT-TAAAAAGATTAAAGCCACAATGGTGAAAATTACTTCC-CTGGCAGTGC
* ** * * * * * ** * * ** **
34790927 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTACAGTGGAGCAGATTG
193 AGTGGAACAGATTGAAGCTACAACGGTAAATCTTGC-TCCAC-GACATTGCAATTAAAAAGATTG
* ** * * * * ** ** * * * *
34790991 AAGCTACAACGGCAAATCTTGCTTGC-CCGAC-ATTGTAATTAAAAAGATAGAAACCACAATAGC
256 AAGCCACAACGGGGAATCTTACTT-CACTGGCGA-TGTACTGGAGCAGATTGAAGCTACAACAGC
* * ** * ** * * * * **
34791054 GAATCTTAG-TTCCCTGGAGGTAT--AGTGGAATAGATTGAAGCTACAACGCTGAATCTTGTTTC
319 GAATC-TGGCTTCCC-AGACAT-TGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTT-
* * * * * * * * ** *
34791116 CCTT-ACATTGCAATTA-AA-ATGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCAGTGCA
380 CCTTGGCAGTGC-AGTAGAACA-GATTGAAGCTACAACGGTGAATCTTGCTTCCCAGAAATTGCA
** **
34791178 ATGGAGC
443 ATTAAAA
* * * * *
34791185 ATATTAAAGCTAGAACGATGAATCTGGCTGCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTAAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
**
34791250 CTGTGAATCTTACTTCCCTGGTAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
66 CTGTGAATCTTACTTCCCTGACAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
* * * ** *
34791315 CTCTGACATTGTAATTAAAAAGATTGAAGCCACAACT-GTGAATCTTACTTCCCTGGTAGTGCAG
131 CCCTGACATTGCAATTAAAAAGATTAAAGCCACAA-TGGTGAAAATTACTTCCCTGGCAGTGCAG
* *
34791379 TGGAACAGATTGAAGCTATAACGGTAAATCTTGCTCCACGACATTGTAATTAAAAAGATTGAAGC
195 TGGAACAGATTGAAGCTACAACGGTAAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGC
* * *
34791444 CATAACGGTGAATCTTACTTCCCTGGCGATGTACTGGAGCAGATTGAAGCTACAACAGCGAATCT
260 CACAACGGGGAATCTTACTTCACTGGCGATGTACTGGAGCAGATTGAAGCTACAACAGCGAATCT
**
34791509 GGCTTCCCAGACATTGCAATTAAAAAGATTGAAGTCACAACGGTGAATCTTACTTCCTTGGCAGT
325 GGCTTCCCAGACATTGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTTCCTTGGCAGT
* * * * *
34791574 GTAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGAAATTGCAATTAAAA
390 GCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGAAATTGCAATTAAAA
* *
34791634 AGATTGAAGCCATAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTAAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
34791699 C-GATGAATCTTACTTCCCTGACGGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTT
66 CTG-TGAATCTTACTTCCCTGACAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
*
34791763 TCCCTGACATTGCAATTAAAAAGATTAAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAG
130 TCCCTGACATTGCAATTAAAAAGATTAAAGCCACAATGGTGAAAATTACTTCCCTGGCAGTGCAG
* * *
34791828 TGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCCATGACATTGCAATTAAAAATATTGAAGC
195 TGGAACAGATTGAAGCTACAACGGTAAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGC
* * * * *
34791893 CACAACGGGGAATCTTACTTCACTGGCGGTGTAGTGGAGTAGATTGAAGCTACAACGGTGAATCT
260 CACAACGGGGAATCTTACTTCACTGGCGATGTACTGGAGCAGATTGAAGCTACAACAGCGAATCT
* *
34791958 GGCTTCCCCGACATTGCAATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTCCTTGGCAGT
325 GGCTTCCCAGACATTGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTTCCTTGGCAGT
*
34792023 GCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGACATTGCAATTAAAA
390 GCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGAAATTGCAATTAAAA
*
34792083 AGTTTAAAGCCACAACGGTGAATCT
1 AGATTAAAGCCACAACGGTGAATCT
34792108 TACTTCCCTG
Statistics
Matches: 1659, Mismatches: 562, Indels: 98
0.72 0.24 0.04
Matches are distributed among these distances:
447 3 0.00
448 285 0.17
449 1219 0.73
450 144 0.09
451 8 0.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (449 bp):
AGATTAAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
CTGTGAATCTTACTTCCCTGACAGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
CCCTGACATTGCAATTAAAAAGATTAAAGCCACAATGGTGAAAATTACTTCCCTGGCAGTGCAGT
GGAACAGATTGAAGCTACAACGGTAAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGCC
ACAACGGGGAATCTTACTTCACTGGCGATGTACTGGAGCAGATTGAAGCTACAACAGCGAATCTG
GCTTCCCAGACATTGCAATTAAAAAGATTGAAACCACAACGGTGAATCTTACTTCCTTGGCAGTG
CAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGAAATTGCAATTAAAA
Found at i:34791891 original size:299 final size:300
Alignment explanation
Indices: 34791586--34792180 Score: 816
Period size: 299 Copynumber: 2.0 Consensus size: 300
34791576 AGTGGAATAG
* * ** * * * *
34791586 ATTGAAGCTACAACGGTGAATCTTGTTTCCCCGAAATTGCAATTAAAAAGATTGAAGCCATAACG
1 ATTGAAGCCACAACGGGGAATCTTACTTCACCGAAAGTGCAATGAAAAAGATTGAAGCCACAACG
*
34791651 GTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGATGAATCTTACTTCC
66 GTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAACCACAACGATGAATCTTACTTCC
* * * * *
34791716 CTGACGGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCTGACATTGCAATTA
131 CTGACAGTGCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGACATTGCAATTA
* * *
34791781 AAAAGATTAAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAGTGGAACAGATTGAAGCTA
196 AAAAGATTAAAGCCACAACGGTGAAAATTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGCTA
*
34791846 CAACGGTGAATCTTGC-T-CCATGACATTGCAATTAAAAAT
261 CAACGATGAATCTTGCTTGCC-TGACATTGCAATTAAAAAT
* *** * * * ** *
34791885 ATTGAAGCCACAACGGGGAATCTTACTTCACTGGCGGTGTAGTGGAGTAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGGGAATCTTACTTCACCGAAAGTGCAATGAAAAAGATTGAAGCCACAACG
* * *
34791950 GTGAATCTGGCTTCCCCGACATTGCAATTAAAAAGATTGAAACCACAATGGTGAATCTTACTTCC
66 GTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAACCACAACGATGAATCTTACTTCC
* *
34792015 TTGGCAGTGCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGACATTGCAATTA
131 CTGACAGTGCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGACATTGCAATTA
* ** *
34792080 AAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTA
196 AAAAGATTAAAGCCACAACGGTGAAAATTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGCTA
* *
34792145 TAACGATGAATCTTGCTTGCCTGACATTGCAGTTAA
261 CAACGATGAATCTTGCTTGCCTGACATTGCAATTAA
34792181 TTAGATTGAA
Statistics
Matches: 255, Mismatches: 39, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
299 238 0.93
300 15 0.06
301 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (300 bp):
ATTGAAGCCACAACGGGGAATCTTACTTCACCGAAAGTGCAATGAAAAAGATTGAAGCCACAACG
GTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAACCACAACGATGAATCTTACTTCC
CTGACAGTGCAGTAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGACATTGCAATTA
AAAAGATTAAAGCCACAACGGTGAAAATTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGCTA
CAACGATGAATCTTGCTTGCCTGACATTGCAATTAAAAAT
Found at i:34792189 original size:50 final size:50
Alignment explanation
Indices: 34788937--34792191 Score: 1526
Period size: 50 Copynumber: 65.3 Consensus size: 50
34788927 NNNNNNNNNN
* * * * * * *
34788937 AAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAAT-T
* * * *
34788988 AACAA-ATTGAAGGTACAACGGGGAATCTTGC-TCCATGACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * ** ** * *
34789036 AAAAA-ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTATAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** * * * * *
34789085 GAGCAGATTGAAGCTACAACGATGAATCTGGCTCCCCTGATAATGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * ** * *
34789135 AAAAAGTTTGAAGCCACAACGGTGAATCTTACTTCCCT-AGCGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGA-CATTGCAATT
* * * * * * * * *
34789185 GAACAGATTCAAGCTACAACGATGAATCTGGCTCCCCTGATAATGCAATA
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * ** * *
34789235 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCT-AGCGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGA-CATTGCAATT
* * * * * * * * *
34789285 GAACAGATTCAAGCTACAACGATGAATCTGGCTCCCCTGATAATGCAATA
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * ** * *
34789335 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCT-AGCGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGA-CATTGCAATT
* * * * * * * * *
34789385 GAACAGATTCAAGCTACAACGATGAATCTGGCTCCCCTGATAATGCAATA
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * ** * *
34789435 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCT-AGCGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGA-CATTGCAATT
* * * * * * * * *
34789485 GAACAGATTCAAGCTACAACGATGAATCTGGCTCCCCTGATAATGCAATA
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * ** * *
34789535 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCT-AGCGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGA-CATTGCAATT
* * * * * * * * *
34789585 GAACAGATTCAAGCTACAACGATGAATCTGGCTCCCCTGATAATGCAATA
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * * *
34789635 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTGGC--GGCATAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCA-A-TT
* ** * * * * * *
34789685 GAGCAGATTGAAGCTATAACGGTAAATCTTGCCTCCCCGACATTGTAAGT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * ** * * ** * *
34789735 AAAAAGATTAAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAAT-T
** * * * * *
34789786 AGCAA-ATTGAAGCGAAAACGGTGAATCTTGC-TCCAC-AATATTACAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGACATTGCAATT
* * * * **** * * *
34789834 AAAAAGATTGATGCCACAACAGTGAATCTTACTTCCCTGTTGGTACAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** * * * * *
34789884 GAGCAGATTGAAGCTATAACGGTAAATCTTGCCTCCCCGACATTGTAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * **** * *
34789934 AAAAAGATTAAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * *
34789984 GAATAGATTGAAGCTACAACGTTGAATCTTGTTTCCCCGACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * ** * * * * *
34790034 AAAAAGATTGAAGCCACAACAGCAAATCCTACTTCCCTGGC-GTGCAATG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** * * **
34790083 GAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCAACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * ** * *
34790133 AAAAAGATTGAAGCCATAACGGCGAATCTTACTTCCCTGGCGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** * ** *
34790183 GAACTGATTGAAGCTACAACGGTAAATCTTATTTCCCTGACATTGCTATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * ** * * *
34790233 AAAAAGATTGAAGCCACAATGGCGAATCTTACTTCTTTAGAGA-TGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCT-GACATTGCAATT
* * ** * *
34790283 GAACAGATTGAAGCTACAAAAGTGAATCTTGC-TCCATGACATTGTAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * ** * *
34790332 AAAAAGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** * * ** *
34790382 GAGCAGATTGAAGCTAAAACGGTGAATCTT-ATTTTCTCGACATTGAAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCT-GACATTGCAATT
* * * * * * * *
34790432 AAAAAGATTGAAACCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
** ** * * *
34790482 AAACAA-ATTGAAGCTACAACGGCAAATCTCACTT-TCTAAACATTGTAATT
1 AAA-AAGATTGAAGCTACAACGGTGAATCTTGCTTCCCT-GACATTGCAATT
* * *
34790532 AAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGGCA--GCGAAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGC-AA-TT
* * * * * * * * *
34790582 GAACAGATTCAAGCTACAACGGTGAATCTGGCTCCCCCGACAATGAAATG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * ** * *
34790632 AAAAAGATTGAAGCCAGAACAGCGAATCTTACTTCCCT-AGCGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGA-CATTGCAATT
* ** * * * * * *
34790682 GAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACAATGAAATG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * * *** * *
34790732 AAAAAGATTGAAGCCAGAACAGCGAATCTTACTTCCCTGGCGGCGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * *
34790782 GAATAGATTGGAGCTACAACGGTGAATTTTGTTTCGCC-GACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCTGACATTGCAATT
* * *** * * * ** * *
34790832 AAAAAGATTGAAGCCACAATGACAAATCTTACTTCCTTGGCGGTGCAGTGG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAAT-T
* * ** *
34790883 AACAA-ATTGAAGCTACAATGGCCAATTTTGC-TCCAC-GACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGACATTGCAATT
* * * ** * * *
34790931 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** ** *
34790981 GAGCAGATTGAAGCTACAACGGCAAATCTTGCTTGCCC-GACATTGTAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTT-CCCTGACATTGCAATT
* * * ** * ** * *
34791031 AAAAAGATAGAAACCACAATAGCGAATCTTAG-TTCCCTGGAGGTAT--AGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTT-GCTTCCCT-GACAT-TGCAATT
* * * * *
34791081 GAATAGATTGAAGCTACAACGCTGAATCTTGTTTCCCTTACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * * * *
34791131 AAAATGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCAGTGCAATG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** * * * * * * *
34791181 GAGCATATTAAAGCTAGAACGATGAATCTGGCTGCCCCGACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * ** * * *
34791231 AAAAAGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * *
34791281 GAACAGATTGAAGCTACAACGGTGAATCTTGTTTCTCTGACATTGTAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * ** * * *
34791331 AAAAAGATTGAAGCCACAACTGTGAATCTTACTTCCCTGGTAGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * *
34791381 GAACAGATTGAAGCTATAACGGTAAATCTTGC-TCCAC-GACATTGTAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGACATTGCAATT
* * * * * * *
34791430 AAAAAGATTGAAGCCATAACGGTGAATCTTACTTCCCTGGCGA-TGTACTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC-ATTGCAATT
* ** * * * *
34791480 GAGCAGATTGAAGCTACAACAGCGAATCTGGCTTCCCAGACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * * *
34791530 AAAAAGATTGAAG-TCACAACGGTGAATCTTACTTCCTTGGCAGTGTAGTG
1 AAAAAGATTGAAGCT-ACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * *
34791580 GAATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGAAATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * *
34791630 AAAAAGATTGAAGCCATAACGGTGAATCTGGCTCCCCCGACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * ** * *
34791680 AAAAAGATTGAAGCCACAACGATGAATCTTACTTCCCTGACGGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * *
34791730 GAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCTGACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * ** * * * * * *
34791780 AAAAAGATTAAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * *
34791830 GAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCATGACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * * ** * * *
34791879 AAAAATATTGAAGCCACAACGGGGAATCTTACTTCACTGGCGGTGTAGTG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** * *
34791929 GAGTAGATTGAAGCTACAACGGTGAATCTGGCTTCCCCGACATTGCAATT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * * * *
34791979 AAAAAGATTGAAACCACAATGGTGAATCTTACTTCCTTGGCAGTGC-AGT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* *
34792028 AGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCAGACATTGCAATT
1 A-AAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * ** * *
34792079 AAAAAGTTTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGG
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAAT-T
* * * * *
34792130 AACAA-ATTGAAGCTATAACGATGAATCTTGCTTGCCTGACATTGCAGTT
1 AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
**
34792179 AATTAGATTGAAG
1 AAAAAGATTGAAG
34792192 ATAGCAAATC
Statistics
Matches: 2248, Mismatches: 892, Indels: 129
0.69 0.27 0.04
Matches are distributed among these distances:
48 40 0.02
49 254 0.11
50 1901 0.85
51 49 0.02
52 4 0.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (50 bp):
AAAAAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
Found at i:34792350 original size:45 final size:44
Alignment explanation
Indices: 34792291--34792405 Score: 142
Period size: 45 Copynumber: 2.6 Consensus size: 44
34792281 ATCGTATCAG
* * *
34792291 GTCTTATC-CTCCTGAAGTTGCAGTGGGGTAGACTGAAGATAGCGA
1 GTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTGAAGATA-CAA
* *
34792336 GTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAGCTACAA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACAA
* *
34792380 ATCCTATCTCCCTGAAGTTGCAGTGG
1 GTCTTATCTCCCTGAAGTTGCAGTGG
34792406 TGCGGATTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 25 0.41
45 35 0.57
46 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (44 bp):
GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACAA
Found at i:34793987 original size:3 final size:3
Alignment explanation
Indices: 34793981--34794038 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
34793971 TTAAACAAAT
34793981 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
34794029 TTA TTA TTA T
1 TTA TTA TTA T
34794039 CATCATCATC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:34800838 original size:12 final size:11
Alignment explanation
Indices: 34800821--34800880 Score: 54
Period size: 12 Copynumber: 5.5 Consensus size: 11
34800811 AGGCAGCCCA
34800821 ATTATTATTATT
1 ATTATTATT-TT
34800833 ATTATTATTTT
1 ATTATTATTTT
* *
34800844 -CT-TTACTTT
1 ATTATTATTTT
*
34800853 ATTTATTACTTT
1 A-TTATTATTTT
34800865 ATT-TTATTTT
1 ATTATTATTTT
34800875 ATTATT
1 ATTATT
34800881 TATTACTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 6 0.15
10 10 0.25
11 7 0.17
12 17 0.43
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:34800879 original size:21 final size:20
Alignment explanation
Indices: 34800825--34800880 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 20
34800815 AGCCCAATTA
34800825 TTATTATTATTATTATTTTCT
1 TTATT-TTATTATTATTTTCT
*
34800846 TTACTTTATTTATTACTTTAT-T
1 TTATTTTA-TTATTA-TTT-TCT
34800868 TTATTTTATTATT
1 TTATTTTATTATT
34800881 TATTACTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 3 0.10
21 15 0.50
22 11 0.37
23 1 0.03
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.71
Consensus pattern (20 bp):
TTATTTTATTATTATTTTCT
Found at i:34800883 original size:17 final size:17
Alignment explanation
Indices: 34800822--34800884 Score: 60
Period size: 17 Copynumber: 3.7 Consensus size: 17
34800812 GGCAGCCCAA
34800822 TTATTA-TTATTATTATT
1 TTATTATTTATT-TTATT
* *
34800839 ATT-TTCTTTACTTTA-T
1 -TTATTATTTATTTTATT
34800855 TTATTACTTTATTTTATT
1 TTATTA-TTTATTTTATT
34800873 TTATTATTTATT
1 TTATTATTTATT
34800885 ACTTATTTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
15 2 0.05
16 3 0.08
17 19 0.51
18 13 0.35
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTATTTATTTTATT
Found at i:34821784 original size:26 final size:26
Alignment explanation
Indices: 34821724--34821792 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 26
34821714 GGGAATTGAT
* *
34821724 TTGCTCACATAAGCTGACATATTTGGG
1 TTGCTCACACAAGCT-TCATATTTGGG
34821751 TTGCTCACACAAGCTTCA-ATTTAGGG
1 TTGCTCACACAAGCTTCATATTT-GGG
34821777 TTGCTCACACAAGCTT
1 TTGCTCACACAAGCTT
34821793 TAGAGATTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
25 4 0.10
26 21 0.54
27 14 0.36
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
TTGCTCACACAAGCTTCATATTTGGG
Found at i:34821947 original size:31 final size:31
Alignment explanation
Indices: 34821912--34821975 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
34821902 TTTACTAAGT
34821912 TTACATGGGCACTATTACAATATCTAAATCA
1 TTACATGGGCACTATTACAATATCTAAATCA
34821943 TTACATGGGCACTATTACAATATCTAAATCA
1 TTACATGGGCACTATTACAATATCTAAATCA
34821974 TT
1 TT
34821976 TCAAAACTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (31 bp):
TTACATGGGCACTATTACAATATCTAAATCA
Found at i:34823127 original size:15 final size:14
Alignment explanation
Indices: 34823098--34823142 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
34823088 TGGCCTCTCA
*
34823098 TTTTCTTTTTCCTT
1 TTTTCATTTTCCTT
*
34823112 TTTTCCTTTTCTCTT
1 TTTTCATTTTC-CTT
*
34823127 TTTTCATTTTCATT
1 TTTTCATTTTCCTT
34823141 TT
1 TT
34823143 GAATTTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 14 0.52
15 13 0.48
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTCATTTTCCTT
Found at i:34823157 original size:6 final size:6
Alignment explanation
Indices: 34823127--34823196 Score: 50
Period size: 6 Copynumber: 11.7 Consensus size: 6
34823117 CTTTTCTCTT
* * * ** ** **
34823127 TTTTCA TTTTCA TTTTGA ATTTGA TTTTGA TTTTTC TTTTTC TTTTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
*
34823175 TTTTGT TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTT
34823197 TTTTTGGATT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 56 1.00
ACGTcount: A:0.11, C:0.06, G:0.09, T:0.74
Consensus pattern (6 bp):
TTTTGA
Found at i:34823183 original size:23 final size:24
Alignment explanation
Indices: 34823125--34823202 Score: 61
Period size: 23 Copynumber: 3.3 Consensus size: 24
34823115 TCCTTTTCTC
* *
34823125 TTTTTTCA-TTTTCATTTTGAATTT
1 TTTTTTGATTTTTCATTTT-CATTT
** * *
34823149 GATTTTGATTTTTCTTTTTCTTTT
1 TTTTTTGATTTTTCATTTTCATTT
* *
34823173 TTTTTTG-TTTTTGATTTTGATTT
1 TTTTTTGATTTTTCATTTTCATTT
34823196 TTTTTTG
1 TTTTTTG
34823203 GATTGGATCT
Statistics
Matches: 41, Mismatches: 12, Indels: 3
0.73 0.21 0.05
Matches are distributed among these distances:
23 19 0.46
24 13 0.32
25 9 0.22
ACGTcount: A:0.10, C:0.05, G:0.09, T:0.76
Consensus pattern (24 bp):
TTTTTTGATTTTTCATTTTCATTT
Found at i:34829562 original size:214 final size:215
Alignment explanation
Indices: 34829180--34829611 Score: 848
Period size: 214 Copynumber: 2.0 Consensus size: 215
34829170 GGCTCGCGTG
34829180 AGTGCTGCTACGTGCGTGGGGAGTGGCTCGGGGGCGTGGTTCGTGGGGCATGTGAGGGGAGCCTG
1 AGTGCTGCTACG-GCGTGGGGAGTGGCTCGGGGGCGTGGTTCGTGGGGCATGTGAGGGGAGCCTG
34829245 CTGGCTGCTGCGATTGGAGGCTGAAGGGGAGTTAAAAACCCTAGGGTTTCTATTTCCTAAAACGT
65 CTGGCTGCTGCGATTGGAGGCTGAAGGGGAGTTAAAAACCCTAGGGTTTCTATTTCCTAAAACGT
34829310 ATTGGGCTATTGAGTGTTGGGCTTGTGCAACCGGGTTAGGTTAAGTTGGGCCATACAGGTTTAGT
130 ATTGGGCTATTGAGTGTTGGGCTTGTGCAACCGGGTTAGGTTAAGTTGGGCCATACAGGTTTAGT
34829375 ATGTATTGGGGCTGGAGGGTT
195 ATGTATTGGGGCTGGAGGGTT
34829396 AGTGCTGCTAC-GCGTGGGGAGTGGCTCGGGGGCGTGGTTCGTGGGGCATGTGAGGGGAGCCTGC
1 AGTGCTGCTACGGCGTGGGGAGTGGCTCGGGGGCGTGGTTCGTGGGGCATGTGAGGGGAGCCTGC
34829460 TGGCTGCTGCGATTGGAGGCTGAAGGGGAGTTAAAAACCCTAGGGTTTCTATTTCCTAAAACGTA
66 TGGCTGCTGCGATTGGAGGCTGAAGGGGAGTTAAAAACCCTAGGGTTTCTATTTCCTAAAACGTA
34829525 TTGGGCTATTGAGTGTTGGGCTTGTGCAACCGGGTTAGGTTAAGTTGGGCCATACAGGTTTAGTA
131 TTGGGCTATTGAGTGTTGGGCTTGTGCAACCGGGTTAGGTTAAGTTGGGCCATACAGGTTTAGTA
34829590 TGTATTGGGGCTGGAGGGTT
196 TGTATTGGGGCTGGAGGGTT
34829610 AG
1 AG
34829612 GTCTTTGTAA
Statistics
Matches: 216, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
214 205 0.95
216 11 0.05
ACGTcount: A:0.17, C:0.15, G:0.40, T:0.28
Consensus pattern (215 bp):
AGTGCTGCTACGGCGTGGGGAGTGGCTCGGGGGCGTGGTTCGTGGGGCATGTGAGGGGAGCCTGC
TGGCTGCTGCGATTGGAGGCTGAAGGGGAGTTAAAAACCCTAGGGTTTCTATTTCCTAAAACGTA
TTGGGCTATTGAGTGTTGGGCTTGTGCAACCGGGTTAGGTTAAGTTGGGCCATACAGGTTTAGTA
TGTATTGGGGCTGGAGGGTT
Found at i:34829951 original size:2 final size:2
Alignment explanation
Indices: 34829939--34829999 Score: 113
Period size: 2 Copynumber: 30.5 Consensus size: 2
34829929 GTATAATTTG
*
34829939 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34829981 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
34830000 AGGCCTTAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:34837438 original size:20 final size:18
Alignment explanation
Indices: 34837391--34837439 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
34837381 CAAGATAAAC
34837391 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
34837408 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
34837428 ATTAAATTAATA
1 ATTAAATTAATA
34837440 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:34839952 original size:61 final size:61
Alignment explanation
Indices: 34839879--34839995 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 61
34839869 CACAAATTGT
* * * *
34839879 TTGTTTATTTTGTGACATTAAGAAAGCGTCATGAAAAA-TAGATTAGAAACATCATGAAATG
1 TTGTGTATTTTGTGACATTAAGAAAACATCAT-AAAAATTAGATTAAAAACATCATGAAATG
* *
34839940 TTGTGTATTTTGTGACATTTAGAAAACATCATAAAAATTTAGTTTAAAAACATCAT
1 TTGTGTATTTTGTGACATTAAGAAAACATCATAAAAA-TTAGATTAAAAACATCAT
34839996 AAAAAATACT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 5 0.10
61 28 0.58
62 15 0.31
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.36
Consensus pattern (61 bp):
TTGTGTATTTTGTGACATTAAGAAAACATCATAAAAATTAGATTAAAAACATCATGAAATG
Found at i:34845601 original size:20 final size:20
Alignment explanation
Indices: 34845576--34845615 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
34845566 CGTAAAATGA
*
34845576 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
34845596 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
34845616 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:34845605 original size:34 final size:35
Alignment explanation
Indices: 34845561--34845627 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
34845551 CAGTAAAATA
*
34845561 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
34845595 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
34845628 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:34845631 original size:14 final size:15
Alignment explanation
Indices: 34845555--34845631 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
34845545 GATTACCAGT
* *
34845555 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
34845569 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
34845583 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
34845603 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
34845618 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
34845632 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:34847039 original size:96 final size:96
Alignment explanation
Indices: 34846928--34847115 Score: 250
Period size: 96 Copynumber: 2.0 Consensus size: 96
34846918 CTTAGTTTCT
* * *
34846928 TCTCTAGTTGGATATTTAATTGGACATTAGAAATCATTATGATCTTTTGAACTACACCAATAAAA
1 TCTCTAGTTGAATATTTAATTGAACATTAGAAACCATTATGATCTTTTGAACTACACCAATAAAA
* *
34846993 TTGTACAAAAGGTGATATCTCAATCGTCTTC
66 TTGCACAAAAGGTGATAGCTCAATCGTCTTC
* * * * * * * * *
34847024 TCTCTATTTGAATATTTAATTGAACATTGGCAACCCTTGTGATCTTTTGAATTGCACCAGTAACA
1 TCTCTAGTTGAATATTTAATTGAACATTAGAAACCATTATGATCTTTTGAACTACACCAATAAAA
34847089 TTGCACAAAAGGTGATAGCTCAATCGT
66 TTGCACAAAAGGTGATAGCTCAATCGT
34847116 ATTCCTCCTT
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (96 bp):
TCTCTAGTTGAATATTTAATTGAACATTAGAAACCATTATGATCTTTTGAACTACACCAATAAAA
TTGCACAAAAGGTGATAGCTCAATCGTCTTC
Found at i:34856209 original size:24 final size:25
Alignment explanation
Indices: 34856182--34856234 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
34856172 GTCATAAAAA
34856182 TTAAACAT-AGCAAAAATATAAATT
1 TTAAACATGAGCAAAAATATAAATT
* * *
34856206 TTAAGCTTGTGCAAAAATATAAATT
1 TTAAACATGAGCAAAAATATAAATT
34856231 TTAA
1 TTAA
34856235 GCTTGTGGCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.34
Consensus pattern (25 bp):
TTAAACATGAGCAAAAATATAAATT
Found at i:34856225 original size:25 final size:25
Alignment explanation
Indices: 34856191--34856241 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
34856181 ATTAAACATA
34856191 GCAAAAATATAAATTTTAAGCTTGT
1 GCAAAAATATAAATTTTAAGCTTGT
34856216 GCAAAAATATAAATTTTAAGCTTGT
1 GCAAAAATATAAATTTTAAGCTTGT
34856241 G
1 G
34856242 GCGCACAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (25 bp):
GCAAAAATATAAATTTTAAGCTTGT
Found at i:34871836 original size:26 final size:26
Alignment explanation
Indices: 34871799--34871853 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 26
34871789 TAAAAGAAAT
34871799 AAATTCTTAATA-AAAGAAAATAAAGA
1 AAATTCTTAATATAAA-AAAATAAAGA
*
34871825 AAATT-TTAAATATTAAAAAAATGAAGA
1 AAATTCTT-AATA-TAAAAAAATAAAGA
34871852 AA
1 AA
34871854 TAACAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 2 0.08
26 9 0.36
27 11 0.44
28 3 0.12
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.25
Consensus pattern (26 bp):
AAATTCTTAATATAAAAAAATAAAGA
Found at i:34871915 original size:22 final size:22
Alignment explanation
Indices: 34871858--34871899 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
34871848 AAGAAATAAC
**
34871858 AAATAAAGGAATAAATGAATTA
1 AAATAAAAAAATAAATGAATTA
34871880 AAATAAAAAAATAAATGAAT
1 AAATAAAAAAATAAATGAAT
34871900 AATATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (22 bp):
AAATAAAAAAATAAATGAATTA
Found at i:34871922 original size:38 final size:37
Alignment explanation
Indices: 34871880--34871961 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 37
34871870 AAATGAATTA
* * *
34871880 AAATAAAAAAATAAATGAATAATATATAATAAATAAGT
1 AAATAAAAAAATAAATGAATAAAATAAAAGAAATAA-T
** * *
34871918 AAATAAGCAATTAAATGAATAAAATAAAAGGAATAAT
1 AAATAAAAAAATAAATGAATAAAATAAAAGAAATAAT
34871955 AAATAAA
1 AAATAAA
34871962 TATGTAAATA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
37 7 0.19
38 29 0.81
ACGTcount: A:0.68, C:0.01, G:0.07, T:0.23
Consensus pattern (37 bp):
AAATAAAAAAATAAATGAATAAAATAAAAGAAATAAT
Found at i:34873316 original size:15 final size:15
Alignment explanation
Indices: 34873296--34873325 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34873286 TTTCTAGTTT
34873296 TTTTTTTCTGTTTGG
1 TTTTTTTCTGTTTGG
*
34873311 TTTTTTTTTGTTTGG
1 TTTTTTTCTGTTTGG
34873326 GCCCAGACGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.03, G:0.20, T:0.77
Consensus pattern (15 bp):
TTTTTTTCTGTTTGG
Found at i:34873316 original size:16 final size:15
Alignment explanation
Indices: 34873295--34873325 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
34873285 TTTTCTAGTT
34873295 TTTTTTTTCTGTTTGG
1 TTTTTTTT-TGTTTGG
34873311 TTTTTTTTTGTTTGG
1 TTTTTTTTTGTTTGG
34873326 GCCCAGACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.00, C:0.03, G:0.19, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTGTTTGG
Found at i:34873565 original size:44 final size:44
Alignment explanation
Indices: 34873481--34874240 Score: 461
Period size: 44 Copynumber: 16.7 Consensus size: 44
34873471 TCATTCTACC
* * * * *
34873481 CCACTGCAACTTCCGAGG-TATAGGATTTGTTGCTTCAATCTACT
1 CCACTGCAACTTCAG-GGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * *
34873525 CCAGTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * * *
34873569 CCACTGCAAGTTTAGGGAGATGAGACTCGTATCTGCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* *
34873613 CCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * * *
34873657 CTACTGCAGCTTTAGAGAGATAATATTTTATATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGA-TTTGTAGCTTCAATCTGCT
* * * *
34873702 CCACTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * *
34873746 CTATTGCAGCTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * * *
34873791 CCACTGCAACTTCAGGGAGAAAAGATTAGTGGCTTTAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * *
34873835 CCATTGTAACTTTAGGGAGATAAAATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * *
34873879 CTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * * * * **
34873924 CTAATACAACTTCAAGGAGATAAGATTTGTAGCTTGTATTTTTAGTTTATT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTT-CA-----A-TCTGCT
* *
34873975 CCACTGCAACTTCAGGGAGATAAGACTTGCTATGGTAGATTTAAT-TCGAC-
1 CCACTGCAACTTCAGGGAGATAAGA--T--T-T-GTAGCTTCAATCT-G-CT
* * ***
34874025 CCACTGCAACTTCAGAGG-TATAAGACTTGTCA-CTTCAATAAACT
1 CCACTGCAACTTCAG-GGAGATAAGATTTGT-AGCTTCAATCTGCT
* * * * ** *
34874069 CCACTGCTACTTCAAGGAGATAAGACTTGTAACTTTGATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * **
34874113 CTACTACAAC-TCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTATT
1 CCACTGCAACTTC-AGGGAGATAAGA----T---TTGTAGCTTCAATCTGCT
* * * ** *
34874164 TCACTGCAACTTCAGGGAAATAAGATTGGCTATATTCAATCTTACT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATC-TGCT
*
34874210 CCACTGCAACTTTAGGGAGATAAGATTTGTA
1 CCACTGCAACTTCAGGGAGATAAGATTTGTA
34874241 ACTTGTAGCT
Statistics
Matches: 553, Mismatches: 127, Indels: 71
0.74 0.17 0.09
Matches are distributed among these distances:
43 8 0.01
44 297 0.54
45 124 0.22
46 29 0.05
47 1 0.00
49 1 0.00
50 23 0.04
51 57 0.10
52 2 0.00
53 1 0.00
55 1 0.00
56 3 0.01
57 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
Found at i:34873721 original size:89 final size:89
Alignment explanation
Indices: 34873513--34873926 Score: 440
Period size: 89 Copynumber: 4.7 Consensus size: 89
34873503 GGATTTGTTG
* * * * * *
34873513 CTTCAATCTACTCCAGTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTACTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGC-A
* * * **
34873578 G-TTTAGGGAGATGAGA-CTCGTAT
65 GCTTTAGAGAGATAAGATTTTATAT
* * * *
34873601 CTGCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAG
*
34873666 CTTTAGAGAGATAATATTTTATAT
66 CTTTAGAGAGATAAGATTTTATAT
* * * *
34873690 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAATATGCTCTATTGCAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAG
* **
34873755 CTTCAGAGAGATAAGATTTGCTAT
66 CTTTAGAGAGATAAGATTTTATAT
* * * * * * * *
34873779 CTTCAATCTGCTCCACTGCAACTTCAGGGAGAAAAGATTAGTGGCTTTAATCTGTTCCATTGTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAG
* *
34873844 CTTTAGGGAGATAAAATTTGTA-A-
66 CTTTAGAGAGATAAGATTT-TATAT
* * * *
34873867 CTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCTA
34873927 ATACAACTTC
Statistics
Matches: 274, Mismatches: 48, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
87 2 0.01
88 102 0.37
89 170 0.62
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (89 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAG
CTTTAGAGAGATAAGATTTTATAT
Found at i:34873766 original size:133 final size:133
Alignment explanation
Indices: 34873465--34873958 Score: 462
Period size: 133 Copynumber: 3.7 Consensus size: 133
34873455 TCTTTTTCAA
* * * * * * * *
34873465 GTAACTTCATTCTACCCCACTGCAACTTCCGAG-GTATAGGATTTG-T-TGCTTCAATCTACTCC
1 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAG-ATAAGATTTGCTAT-CTTCAATCTGCTCT
* * ** * * * *
34873527 AGTGCAACTTCAGGGAGATTAGACTT-GTAGCTTTAATCTACTCCACTGCAAGTTTAGGGAGATG
64 ACTGCAACTTCAGAGAGAAAAGA-TTAGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATA
* *
34873591 AGACTC
128 AGATTT
* * * * * *
34873597 GTATCTGCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG-TAACTTCAATCTGCTCTAC
1 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
* * ** *
34873661 TGCAGCTTTAGAGAGATAATATTTTA-TATCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
66 TGCAACTTCAGAGAGA-AA-AGATTAGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
34873725 GATTT
129 GATTT
** * * * * *
34873730 GTGGCTTTAATATGCTCTATTGCAGCTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCAC
1 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
* * * * * * *
34873795 TGCAACTTCAGGGAGAAAAGATTAGTGGCTTTAATCTGTTCCATTGTAACTTTAGGGAGATAAAA
66 TGCAACTTCAGAGAGAAAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
34873860 TTT
131 TTT
*
34873863 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAA
1 GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
* * *
34873928 TACAACTTCA-AGGAGATAAGATTTGTAGCTT
66 TGCAACTTCAGA-GAGAAAAGATTAGTAGCTT
34873959 GTATTTTTAG
Statistics
Matches: 290, Mismatches: 64, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
132 65 0.22
133 194 0.67
134 31 0.11
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (133 bp):
GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTAC
TGCAACTTCAGAGAGAAAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
TTT
Found at i:34874174 original size:51 final size:51
Alignment explanation
Indices: 34874119--34874251 Score: 136
Period size: 46 Copynumber: 2.7 Consensus size: 51
34874109 TGCTCTACTA
* * *
34874119 CAACTCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATC-TATTTCACTG
1 CAACT-TAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTTACTCCACTG
* * *
34874170 CAACTTCAGGGAAATAAGA-TTG--GC-TATA--TTCAATCTTACTCCACTG
1 CAACTT-AGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTTACTCCACTG
34874216 CAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTT
1 CAAC-TTAGGGAGATAAGATTTGTAACTTGTAGCTT
34874252 TAGTCTGTTC
Statistics
Matches: 64, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
45 6 0.09
46 23 0.36
47 8 0.12
48 1 0.02
49 1 0.02
50 7 0.11
51 16 0.25
52 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
CAACTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTTACTCCACTG
Found at i:34874278 original size:51 final size:50
Alignment explanation
Indices: 34874115--34874287 Score: 144
Period size: 51 Copynumber: 3.5 Consensus size: 50
34874105 GATATGCTCT
* * *
34874115 ACTACAAC-TCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTATTTC
1 ACTACAACTTC-AGGGAAATAAGATTTGTAACTTGTAGCTTCAATCT-TTCC
* * *
34874166 ACTGCAACTTCAGGGAAATAAGA-TTG--GC-TATA--TTCAATCTTACTCC
1 ACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGCTTCAATCTT--TCC
* * * * *
34874212 ACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAGTCTGTTCC
1 ACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGCTTCAATCT-TTCC
*
34874263 ACTACAACTTCAGGGAAACAAGATT
1 ACTACAACTTCAGGGAAATAAGATT
34874288 CGCTATCTTC
Statistics
Matches: 96, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
44 1 0.01
45 7 0.07
46 23 0.24
47 6 0.06
48 1 0.01
49 1 0.01
50 6 0.06
51 42 0.44
52 8 0.08
53 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (50 bp):
ACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGCTTCAATCTTTCC
Found at i:34880360 original size:44 final size:44
Alignment explanation
Indices: 34880284--34880738 Score: 433
Period size: 44 Copynumber: 10.3 Consensus size: 44
34880274 CAACTCGTAG
* * * *
34880284 GATTTGTTGCTTCAATCTACTCCACTGCAACTTCAGGGAGATTA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * *
34880328 GACTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGGTGA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * ** * *
34880372 GACTCGTATTTTCAATCTACTCCATTACAACTTCAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* ** *
34880416 GATTTGTAACTTCAATCTGCTTTACTACAACTTCAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * *
34880460 TATTTGCTATCTTCAATCTACTCCACTACAACTTTAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * * * *
34880505 GATTTGTGGCTTTAATATGCTCTACTGCAGCTTCAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * *
34880549 GATTTGCTATCTTCAATCTGTTCCACTACAACTTCAGGGAGAAAA
1 GATTTG-TAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * ** *
34880594 GATTTGTGGCTTTAATCTGTTCCATTGTAACTTTAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * * *
34880638 GATTTGTAACTTCAATCTGCTCTACTGCAGCTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
* * *
34880682 GATTTGCTATCTTCAATTTGCTCTACTACAACTTCAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
*
34880727 GATTTATAGCTT
1 GATTTGTAGCTT
34880739 ATAGTTTTAG
Statistics
Matches: 331, Mismatches: 77, Indels: 6
0.80 0.19 0.01
Matches are distributed among these distances:
44 223 0.67
45 108 0.33
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (44 bp):
GATTTGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAA
Found at i:34880501 original size:89 final size:88
Alignment explanation
Indices: 34880284--34880731 Score: 484
Period size: 89 Copynumber: 5.1 Consensus size: 88
34880274 CAACTCGTAG
* * *
34880284 GATTTGT-TGCTTCAATCTACTCCACTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGC
1 GATTTGTAT-CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGC
* * *
34880348 TCCACTGCAACTTCAGGGAGGTGA
65 TCTACTGCAACTTCAGGGAGATAA
* * * * * *
34880372 GACTCGTATTTTCAATCTACTCCATTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCT
1 GATTTGTATCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* * *
34880437 TTACTACAACTTCAGAGAGATAA
66 CTACTGCAACTTCAGGGAGATAA
* * * *
34880460 TATTTGCTATCTTCAATCTACTCCACTACAACTTTAGGGAGATAAGATTTGTGGCTTTAATATGC
1 GATTTG-TATCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGC
* *
34880525 TCTACTGCAGCTTCAGAGAGATAA
65 TCTACTGCAACTTCAGGGAGATAA
** * * *
34880549 GATTTGCTATCTTCAATCTGTTCCACTACAACTTCAGGGAGAAAAGATTTGTGGCTTTAATCTGT
1 GATTTG-TATCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGC
* * * *
34880614 TCCATTGTAACTTTAGGGAGATAA
65 TCTACTGCAACTTCAGGGAGATAA
* * * * * * * * * *
34880638 GATTTGTAACTTCAATCTGCTCTACTGCAGCTTTAGAGAGATAAGATTTGCTATCTTCAATTTGC
1 GATTTGTATCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGC
*
34880703 TCTACTACAACTTCAGGGAGATAA
65 TCTACTGCAACTTCAGGGAGATAA
34880727 GATTT
1 GATTT
34880732 ATAGCTTATA
Statistics
Matches: 298, Mismatches: 59, Indels: 5
0.82 0.16 0.01
Matches are distributed among these distances:
88 110 0.37
89 188 0.63
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (88 bp):
GATTTGTATCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
CTACTGCAACTTCAGGGAGATAA
Found at i:34880540 original size:133 final size:133
Alignment explanation
Indices: 34880293--34880738 Score: 464
Period size: 133 Copynumber: 3.4 Consensus size: 133
34880283 GGATTTGTTG
* ** * * * * * *
34880293 CTTCAATCTACTCCACTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGCTCCACTGCAA
1 CTTCAATCTGCTTTACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTACAA
* * * * * ** * * * * * * *
34880358 CTTCAGGGAGGTGAGACTCGTATTTTCAATCTACTCCATTACAACTTCAGGGAGATAAGATTTG-
66 CTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTGC
*
34880422 TAA
131 TAT
* * *
34880425 CTTCAATCTGCTTTACTACAACTTCAGAGAGATAATATTTGCTATCTTCAATCTACTCCACTACA
1 CTTCAATCTGCTTTACTACAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTACTCCACTACA
** *
34880490 ACTTTAGGGAGATAAGATTTGTGGCTTTAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTG
65 ACTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTG
34880555 CTAT
130 CTAT
* * * * ** * **
34880559 CTTCAATCTG-TTCCACTACAACTTCAGGGAGAAAAGATTTGTGGCTTTAATCTGTTCCATTGTA
1 CTTCAATCTGCTT-TACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTACA
* *
34880623 ACTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAGCTTTAGAGAGATAAGATTTG
65 ACTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTG
34880688 CTAT
130 CTAT
* * *
34880692 CTTCAATTTGCTCTACTACAACTTCAGGGAGATAAGATTTATAGCTT
1 CTTCAATCTGCTTTACTACAACTTCAGGGAGATAAGATTTGTAGCTT
34880739 ATAGTTTTAG
Statistics
Matches: 258, Mismatches: 52, Indels: 7
0.81 0.16 0.02
Matches are distributed among these distances:
132 33 0.13
133 188 0.73
134 37 0.14
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (133 bp):
CTTCAATCTGCTTTACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTACAA
CTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCTACTGCAGCTTCAGAGAGATAAGATTTGC
TAT
Found at i:34882023 original size:19 final size:20
Alignment explanation
Indices: 34881986--34882024 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
34881976 GTGATTTTTT
* *
34881986 GAAAAATTAATTTTGATCAA
1 GAAAAATTAATATTAATCAA
34882006 GAAAAATTAA-ATTAATCAA
1 GAAAAATTAATATTAATCAA
34882025 ATTAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (20 bp):
GAAAAATTAATATTAATCAA
Found at i:34885479 original size:6 final size:6
Alignment explanation
Indices: 34885468--34885509 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
34885458 ATACTATGTA
34885468 TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG
34885510 AAATGTGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:34888430 original size:16 final size:17
Alignment explanation
Indices: 34888409--34888441 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
34888399 ATTTATTATT
34888409 AAATTTA-AATTAAATA
1 AAATTTATAATTAAATA
*
34888425 AAATTTATTATTAAATA
1 AAATTTATAATTAAATA
34888442 TTAATTTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATTTATAATTAAATA
Found at i:34892247 original size:76 final size:75
Alignment explanation
Indices: 34892095--34892311 Score: 240
Period size: 76 Copynumber: 2.9 Consensus size: 75
34892085 GGCTTAATTT
* * * **
34892095 ATTTTTTAAAACAGATTCGACTTTTGATAAAATGAAAAATAAAAGGACCTCGACAACAA-CATAA
1 ATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGGACCTCGACGATAATC-TCG
34892159 AGGCTCGACCC
65 AGGCTCGACCC
* * * *
34892170 ATTTTTGAAAATC-GATTCGACTTTTAATACAATGAAACATTGAAAGGACCTCGACGATAATCTC
1 ATTTTTTAAAA-CAGATTCGACTTTTGATACAATGAAA-AATAAAAGGACCTCGACGATAATCTC
*
34892234 GAGGCTTGACCC
64 GAGGCTCGACCC
* * * * * * *
34892246 ATTTTTTAAAACGGATTTGACTTTTGATACAAAGAAAACTAAAAAGACCCCAACGATAATCTCGA
1 ATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGGACCTCGACGATAATCTCGA
34892311 G
66 G
34892312 TGATAACATG
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
75 57 0.48
76 61 0.51
77 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (75 bp):
ATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGGACCTCGACGATAATCTCGA
GGCTCGACCC
Found at i:34892634 original size:2 final size:2
Alignment explanation
Indices: 34892622--34892651 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
34892612 AATTTAATAA
34892622 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A
34892652 AGGCTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:34893502 original size:28 final size:28
Alignment explanation
Indices: 34893470--34893527 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
34893460 ATTATTTATG
34893470 TTGTTTTGATTATTTACTTTCTAAAACA
1 TTGTTTTGATTATTTACTTTCTAAAACA
34893498 TTGTTTTGATTATTTACTTTCTAAAACA
1 TTGTTTTGATTATTTACTTTCTAAAACA
34893526 TT
1 TT
34893528 CTCAAAACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.55
Consensus pattern (28 bp):
TTGTTTTGATTATTTACTTTCTAAAACA
Found at i:34893951 original size:76 final size:75
Alignment explanation
Indices: 34893755--34893957 Score: 205
Period size: 76 Copynumber: 2.7 Consensus size: 75
34893745 GTGCCCATCA
* * * * *
34893755 CCGAGGCTCGACCCATTTTTAGAAAATCAAATTGGCTTTTGACAAAATG-ACAACTGAAAGACCT
1 CCGAGGCTCGACCCATTTTT-GAAAATGAATTTGACTTTTGATAAAATGAAAAACTGAAAGACCT
**
34893819 CGATGGCAATC
65 CGATAACAATC
* * * ** *
34893830 CTGAGGCTCGACCCATTTTTGAAAACGGATTCAACATTT-AGTAAAATGAAAAACTGAAAGGACC
1 CCGAGGCTCGACCCATTTTTGAAAATGAATTTGACTTTTGA-TAAAATGAAAAACTGAAA-GACC
*
34893894 TC-ACTAATAATC
64 TCGA-TAACAATC
* *
34893906 CCGAGGCTTGACCCATTTCTGAAAATGAATTTGACTTTTGATAAAATGAAAA
1 CCGAGGCTCGACCCATTTTTGAAAATGAATTTGACTTTTGATAAAATGAAAA
34893958 CTAAAAAGAC
Statistics
Matches: 101, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
73 1 0.01
74 17 0.17
75 29 0.29
76 53 0.52
77 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (75 bp):
CCGAGGCTCGACCCATTTTTGAAAATGAATTTGACTTTTGATAAAATGAAAAACTGAAAGACCTC
GATAACAATC
Found at i:34896860 original size:43 final size:43
Alignment explanation
Indices: 34896813--34896928 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
34896803 GAACGGTAAT
**
34896813 TTTAG-GGCGTTTGTGAAAAAAAGCGTTGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTG-AAAAAAGCGCCGCTAAAGGTCATGTTC
* * *
34896856 TTTAGCGGCATTTGTGAAAAAGGTGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGTTC
34896899 TTTAGCGGCGTTTATGTGAAAGAAA-CGCCG
1 TTTAGCGGCG-TT-TGTGAAA-AAAGCGCCG
34896929 TCAAAATTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
43 37 0.61
44 11 0.18
45 11 0.18
46 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:34897274 original size:15 final size:16
Alignment explanation
Indices: 34897254--34897289 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
34897244 TTAAAAGATG
*
34897254 TTTTTAAATAA-CTAT
1 TTTTTAAAAAAGCTAT
34897269 TTTTTAAAAAAGCTAT
1 TTTTTAAAAAAGCTAT
34897285 TTTTT
1 TTTTT
34897290 TTAAAAACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (16 bp):
TTTTTAAAAAAGCTAT
Found at i:34897284 original size:16 final size:15
Alignment explanation
Indices: 34897254--34897305 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
34897244 TTAAAAGATG
*
34897254 TTTTTAAATAACTAT
1 TTTTTAAAAAACTAT
34897269 TTTTTAAAAAAGCTATT
1 TTTTTAAAAAA-CTA-T
*
34897286 TTTTTTAAAAACTACT
1 TTTTTAAAAAACTA-T
34897302 TTTT
1 TTTT
34897306 GTTTATGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 10 0.31
16 11 0.34
17 11 0.34
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (15 bp):
TTTTTAAAAAACTAT
Found at i:34897304 original size:15 final size:14
Alignment explanation
Indices: 34897254--34897305 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 14
34897244 TTAAAAGATG
34897254 TTTTTAAATAACTAT
1 TTTTTAAA-AACTAT
34897269 TTTTTAAAAAAGCTATTT
1 TTTTT-AAAAA-CTA--T
34897287 TTTTTAAAAACTACT
1 TTTTTAAAAACTA-T
34897302 TTTT
1 TTTT
34897306 GTTTATGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
15 12 0.38
16 9 0.28
17 5 0.16
18 6 0.19
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (14 bp):
TTTTTAAAAACTAT
Found at i:34897738 original size:21 final size:19
Alignment explanation
Indices: 34897704--34897743 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
34897694 TTTACTTTTT
*
34897704 TTAAATTTTTTTAATATTGA
1 TTAAATTATTTTAAT-TTGA
34897724 TTAAATCTATTTTAATTTGA
1 TTAAAT-TATTTTAATTTGA
34897744 GAAATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (19 bp):
TTAAATTATTTTAATTTGA
Found at i:34899906 original size:19 final size:21
Alignment explanation
Indices: 34899882--34899927 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
34899872 ATCTTGAAAC
34899882 ATTTTAAAATTT-TAAAA-TA
1 ATTTTAAAATTTATAAAATTA
34899901 ATTTT--AATTTATAAAATTA
1 ATTTTAAAATTTATAAAATTA
34899920 ATTTTAAA
1 ATTTTAAA
34899928 TAATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 5 0.22
18 5 0.22
19 12 0.52
21 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTTAAAATTTATAAAATTA
Found at i:34901125 original size:23 final size:22
Alignment explanation
Indices: 34901090--34901132 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
34901080 AATGTTTTAT
34901090 ATTATAAAATATGAATATTTCA
1 ATTATAAAATATGAATATTTCA
*
34901112 ATTATATAAATATGAGTATTT
1 ATTATA-AAATATGAATATTT
34901133 GTTTTAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (22 bp):
ATTATAAAATATGAATATTTCA
Found at i:34901145 original size:37 final size:37
Alignment explanation
Indices: 34901104--34901177 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
34901094 TAAAATATGA
34901104 ATATTTCAATTATATAAATATGAGTATTTGTTTTAGT
1 ATATTTCAATTATATAAATATGAGTATTTGTTTTAGT
*
34901141 ATATTTTAATTATATAAATATGAGTATTTGTTTTAGT
1 ATATTTCAATTATATAAATATGAGTATTTGTTTTAGT
34901178 CTTGCTTAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.35, C:0.01, G:0.11, T:0.53
Consensus pattern (37 bp):
ATATTTCAATTATATAAATATGAGTATTTGTTTTAGT
Found at i:34904034 original size:10 final size:9
Alignment explanation
Indices: 34904019--34904074 Score: 58
Period size: 10 Copynumber: 5.8 Consensus size: 9
34904009 GTTTTTAAAT
34904019 TAATTTCTAA
1 TAATTT-TAA
*
34904029 TAATTTTTA
1 TAATTTTAA
*
34904038 TAAATTTAA
1 TAATTTTAA
34904047 TTAAATTTTAA
1 -T-AATTTTAA
34904058 TAAATTTTAA
1 T-AATTTTAA
34904068 TAATTTT
1 TAATTTT
34904075 TTATGTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
9 15 0.38
10 18 0.45
11 7 0.17
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (9 bp):
TAATTTTAA
Found at i:34904053 original size:20 final size:20
Alignment explanation
Indices: 34904020--34904078 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
34904010 TTTTTAAATT
34904020 AATTTCTAAT-AATTTTTATA
1 AATTT-TAATAAATTTTTATA
*
34904040 AA-TTTAATTAAATTTTAATA
1 AATTTTAA-TAAATTTTTATA
*
34904060 AATTTTAATAATTTTTTAT
1 AATTTTAATAAATTTTTAT
34904079 GTTTTTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 3 0.09
19 3 0.09
20 22 0.67
21 5 0.15
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTTTAATAAATTTTTATA
Found at i:34905211 original size:18 final size:18
Alignment explanation
Indices: 34905190--34905227 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
34905180 ATAAAATAAG
34905190 ATAGTATGATAAATTTGA
1 ATAGTATGATAAATTTGA
34905208 ATAGTATGATAAATTTGA
1 ATAGTATGATAAATTTGA
34905226 AT
1 AT
34905228 TGTTAGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (18 bp):
ATAGTATGATAAATTTGA
Found at i:34922209 original size:26 final size:27
Alignment explanation
Indices: 34922173--34922234 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
34922163 ACATATTTTC
*
34922173 TCAAAATTTTATCT-TGGGAAAAATC-A
1 TCAAAATTTTA-CTACGGGAAAAATCGA
*
34922199 TCAAAATTTTACTACGGGTAAAATCGA
1 TCAAAATTTTACTACGGGAAAAATCGA
34922226 -CAAAATTTT
1 TCAAAATTTT
34922235 GTTAGGGGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 29 0.91
27 1 0.03
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TCAAAATTTTACTACGGGAAAAATCGA
Found at i:34922243 original size:26 final size:26
Alignment explanation
Indices: 34922173--34922248 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
34922163 ACATATTTTC
* *
34922173 TCAAAATTTTATCT-TGGGAAAAATCA
1 TCAAAATTTTA-CTACGGGTAAAATCA
34922199 TCAAAATTTTACTACGGGTAAAATCGA
1 TCAAAATTTTACTACGGGTAAAATC-A
** *
34922226 -CAAAATTTTGTTAGGGGTAAAAT
1 TCAAAATTTTACTACGGGTAAAAT
34922249 AGGGATGAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 40 0.93
27 1 0.02
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACTACGGGTAAAATCA
Found at i:34927746 original size:3 final size:3
Alignment explanation
Indices: 34927725--34927762 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
34927715 TAATAGCTCC
* *
34927725 ATT ATT TTT ATT ATC ATT ATT ATT ATT ATT ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
34927763 TTTTTAATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:34938812 original size:16 final size:16
Alignment explanation
Indices: 34938801--34938860 Score: 102
Period size: 16 Copynumber: 3.8 Consensus size: 16
34938791 TGTATTAGAT
* *
34938801 TAGAGGTGTATTGGAT
1 TAGAGGTGTAATGGAA
34938817 TAGAGGTGTAATGGAA
1 TAGAGGTGTAATGGAA
34938833 TAGAGGTGTAATGGAA
1 TAGAGGTGTAATGGAA
34938849 TAGAGGTGTAAT
1 TAGAGGTGTAAT
34938861 AGCAAATCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.30
Consensus pattern (16 bp):
TAGAGGTGTAATGGAA
Found at i:34938944 original size:39 final size:43
Alignment explanation
Indices: 34938839--34938948 Score: 111
Period size: 45 Copynumber: 2.6 Consensus size: 43
34938829 GGAATAGAGG
34938839 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
*** * ***
34938884 TGTAATGGAATAGATACGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
34938924 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
34938949 TAATGGAAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
39 18 0.34
40 2 0.04
43 1 0.02
44 11 0.21
45 21 0.40
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:34939148 original size:16 final size:15
Alignment explanation
Indices: 34939123--34939169 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
34939113 TATAATTTAA
34939123 TAAAATTCTTAACAT
1 TAAAATTCTTAACAT
*
34939138 TAAATATTCTT-ATA-
1 TAAA-ATTCTTAACAT
34939152 T-AAATTCTTAACAT
1 TAAAATTCTTAACAT
34939166 TAAA
1 TAAA
34939170 TATAATTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
12 6 0.23
13 4 0.15
14 2 0.08
15 8 0.31
16 6 0.23
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAAATTCTTAACAT
Found at i:34939169 original size:14 final size:14
Alignment explanation
Indices: 34939125--34939170 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 14
34939115 TAATTTAATA
34939125 AAATTCTTAACATT
1 AAATTCTTAACATT
*
34939139 AAATATTCTT-ATA-T
1 -AA-ATTCTTAACATT
34939153 AAATTCTTAACATT
1 AAATTCTTAACATT
34939167 AAAT
1 AAAT
34939171 ATAATTGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
12 6 0.23
13 4 0.15
14 6 0.23
15 4 0.15
16 6 0.23
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATTCTTAACATT
Found at i:34950461 original size:87 final size:87
Alignment explanation
Indices: 34950310--34950665 Score: 604
Period size: 87 Copynumber: 4.1 Consensus size: 87
34950300 AGATCAGTGA
*
34950310 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
34950375 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
34950397 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGACCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
34950462 CTTCCTGCGTTAATAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * *
34950484 AGATTGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
34950549 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
34950571 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * ** *
34950636 CCTCCTACGTCGACAGTGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
34950658 AGATCGAA
1 AGATCGAA
34950666 GATTACAAGT
Statistics
Matches: 252, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 252 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:34950814 original size:44 final size:44
Alignment explanation
Indices: 34950766--34951054 Score: 152
Period size: 44 Copynumber: 6.7 Consensus size: 44
34950756 AAATCAATCC
* *
34950766 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAACAATAGATCT
** * * *
34950810 TATCTCCCT-AAGCAGTAGTGGAGCAGATCG----C-ATCGGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-GAAAACAAT-AGATCT
**
34950850 TATCTCCCTGAAGTTGCAACGGAGCAGACTGAGAAA-ACA-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TGA-AAACA-ATAGATCT
* * * * *
34950894 TATCCCCCTGAAGTTGCAGTGGGGCAGATCGAAGA-AGTAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-GAAAACAATAGATCT
* * * ** * *
34950938 TATCTCCCTGAGGTTACAGTGGAGCATATCGAAGCCGATA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-GAAAACAATAGATCT
** * **
34950982 TATCTCCCTGAAGTTTTAGTGGAGC-GTATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAG-ATGAAAACAATAGATCT
* * * *
34951026 CATCTCTCTGAAGTTTCAGTAGAGCAGAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT
34951055 CGCATCAAGT
Statistics
Matches: 184, Mismatches: 43, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
39 2 0.01
40 14 0.08
41 14 0.08
42 1 0.01
43 25 0.14
44 123 0.67
45 4 0.02
47 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAACAATAGATCT
Found at i:34951851 original size:13 final size:13
Alignment explanation
Indices: 34951835--34951868 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
34951825 TTTTTTCCTT
34951835 TTTTCTTTTTCGG
1 TTTTCTTTTTCGG
34951848 TTTTC-TTTTCGG
1 TTTTCTTTTTCGG
*
34951860 TTTTGTTTT
1 TTTTCTTTT
34951869 GATTCATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.74
Consensus pattern (13 bp):
TTTTCTTTTTCGG
Found at i:34955962 original size:41 final size:41
Alignment explanation
Indices: 34955900--34956092 Score: 158
Period size: 41 Copynumber: 4.7 Consensus size: 41
34955890 TTGAGTCCAA
* * *
34955900 CAGGCTTCATGTCGGTGTATATTATTAGGCTTTGTGCCTAG
1 CAGGTTTCATGCCGGTGTATATTATCAGGCTTTGTGCCTAG
* ** * *
34955941 TAGGTTTCATGTTGGTTTATATTATCAGGCTTTGTGCCTGG
1 CAGGTTTCATGCCGGTGTATATTATCAGGCTTTGTGCCTAG
* * *
34955982 CAAGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAG
1 CAGGTTTCATGCCGGTGTATATTATCAGGCTTTGTGCCTAG
* * * ** *
34956023 CAGGCTTTGA-GCTGGTGTAT-TGTATTAGGCTTTGAACCTAA
1 CAGG-TTTCATGCCGGTGTATAT-TATCAGGCTTTGTGCCTAG
* * *
34956064 CAGGCTTCTTGCCAGTGTAT-TGTATCAGG
1 CAGGTTTCATGCCGGTGTATAT-TATCAGG
34956093 TAACTTGTAC
Statistics
Matches: 120, Mismatches: 29, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
40 3 0.03
41 114 0.95
42 3 0.03
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (41 bp):
CAGGTTTCATGCCGGTGTATATTATCAGGCTTTGTGCCTAG
Found at i:34956071 original size:82 final size:82
Alignment explanation
Indices: 34955881--34956091 Score: 205
Period size: 82 Copynumber: 2.6 Consensus size: 82
34955871 GGAGATAGTG
* * * * * *
34955881 TATCAGGCCTTGAGTCC-AACAGGCTTCATGTCGGTGTATATTATTAGGCTTTGTGCCTAGTAGG
1 TATCAGGCTTTGA-ACCTAACAGGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAGCAGG
* *
34955945 TTTCATGTTGGTTTATAT
65 TTTCATGCTGGTGTATAT
** ** *
34955963 TATCAGGCTTTGTGCCTGGCAAGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAGCAGGC
1 TATCAGGCTTTGAACCTAACAGGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAGCAGG-
*
34956028 TTTGA-GCTGGTGTAT-T
65 TTTCATGCTGGTGTATAT
* * *
34956044 GTATTAGGCTTTGAACCTAACAGGCTTCTTGCCAGTGTAT-TGTATCAG
1 -TATCAGGCTTTGAACCTAACAGGCTTCATGCCGGTGTATAT-TATCAG
34956092 GTAACTTGTA
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
81 4 0.04
82 96 0.92
83 4 0.04
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.37
Consensus pattern (82 bp):
TATCAGGCTTTGAACCTAACAGGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAGCAGGT
TTCATGCTGGTGTATAT
Found at i:34964323 original size:16 final size:18
Alignment explanation
Indices: 34964289--34964325 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
34964279 TGTTCAGATC
34964289 TTATATTTAATATAATTGT
1 TTATATTTAATAT-ATTGT
34964308 TTATATTT-ATAT-TTGT
1 TTATATTTAATATATTGT
34964324 TT
1 TT
34964326 TGTCCAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (18 bp):
TTATATTTAATATATTGT
Found at i:34965581 original size:20 final size:19
Alignment explanation
Indices: 34965537--34965591 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 19
34965527 GAGAATACCA
34965537 AACCTAAAAATATGATGAAG
1 AACC-AAAAATATGATGAAG
*
34965557 TACCAAAAATTATGA-GAAAG
1 AACCAAAAA-TATGATG-AAG
34965577 AACCAGAAAATATGA
1 AACCA-AAAATATGA
34965592 AGGAAAGAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 6 0.20
20 20 0.67
21 4 0.13
ACGTcount: A:0.56, C:0.11, G:0.15, T:0.18
Consensus pattern (19 bp):
AACCAAAAATATGATGAAG
Found at i:34965621 original size:20 final size:21
Alignment explanation
Indices: 34965596--34965635 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
34965586 ATATGAAGGA
34965596 AAGAGAATACC-AAAACTACT
1 AAGAGAATACCAAAAACTACT
*
34965616 AAGAGAGTACCAAAAACTAC
1 AAGAGAATACCAAAAACTAC
34965636 GAGGAAGTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.55, C:0.20, G:0.12, T:0.12
Consensus pattern (21 bp):
AAGAGAATACCAAAAACTACT
Found at i:34965897 original size:20 final size:21
Alignment explanation
Indices: 34965872--34965924 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
34965862 TACGAGGGAG
34965872 GAAGTATCAAAAATTTTA-AA
1 GAAGTATCAAAAATTTTATAA
* *
34965892 GAAGTAT-TAAAA-TTTATGA
1 GAAGTATCAAAAATTTTATAA
34965911 GAA-TATCAAAAATT
1 GAAGTATCAAAAATT
34965925 ACGAAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 7 0.26
19 12 0.44
20 8 0.30
ACGTcount: A:0.53, C:0.04, G:0.11, T:0.32
Consensus pattern (21 bp):
GAAGTATCAAAAATTTTATAA
Found at i:34967403 original size:21 final size:22
Alignment explanation
Indices: 34967374--34967414 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
34967364 TATATAATTT
*
34967374 TTTTTATTATGA-TTAATATAA
1 TTTTAATTATGATTTAATATAA
34967395 TTTTAATTATGATTTAATAT
1 TTTTAATTATGATTTAATAT
34967415 CAAATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (22 bp):
TTTTAATTATGATTTAATATAA
Found at i:34969320 original size:21 final size:22
Alignment explanation
Indices: 34969287--34969327 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
34969277 GGTTTCATCT
*
34969287 ATTTAACTTTATTTTTTTATAA
1 ATTTAACTTTATTTATTTATAA
34969309 ATTTAA-TTTATTTATTTAT
1 ATTTAACTTTATTTATTTAT
34969328 CGTAACTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (22 bp):
ATTTAACTTTATTTATTTATAA
Found at i:34971821 original size:31 final size:32
Alignment explanation
Indices: 34971783--34971858 Score: 118
Period size: 32 Copynumber: 2.4 Consensus size: 32
34971773 ATGGTTCAAA
* *
34971783 GTTTCAATTTTTCTTT-TTTCTTTTTCTAAAG
1 GTTTCAATCTTTCTTTCTTTCTTTTTCAAAAG
*
34971814 GTTTCAATCTTTCTTTCTTTTTTTTTCAAAAG
1 GTTTCAATCTTTCTTTCTTTCTTTTTCAAAAG
34971846 GTTTCAATCTTTC
1 GTTTCAATCTTTC
34971859 ATAGATTTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
31 15 0.37
32 26 0.63
ACGTcount: A:0.17, C:0.16, G:0.07, T:0.61
Consensus pattern (32 bp):
GTTTCAATCTTTCTTTCTTTCTTTTTCAAAAG
Found at i:34974317 original size:29 final size:30
Alignment explanation
Indices: 34974275--34974338 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 30
34974265 GACAGTTTCG
*
34974275 AGAATGTCGTATGTGCCATAGAAGAGTC-A
1 AGAATGTCGTATGTACCATAGAAGAGTCAA
34974304 AGAATGTCGTATGTACCATAGAAGAGTCAA
1 AGAATGTCGTATGTACCATAGAAGAGTCAA
34974334 AGAAT
1 AGAAT
34974339 CTAGCAACGC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 27 0.82
30 6 0.18
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.23
Consensus pattern (30 bp):
AGAATGTCGTATGTACCATAGAAGAGTCAA
Found at i:34977912 original size:24 final size:24
Alignment explanation
Indices: 34977880--34977929 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
34977870 TTAAATAAAC
34977880 TTAAATGAAAAGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
34977904 TTAAATGAAAAGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
34977928 TT
1 TT
34977930 TTTTAATGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.04, G:0.20, T:0.32
Consensus pattern (24 bp):
TTAAATGAAAAGTCAAGAGTTATG
Found at i:34978112 original size:17 final size:17
Alignment explanation
Indices: 34978090--34978122 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
34978080 GATATAGAAT
34978090 GTGAACAATTTTACATA
1 GTGAACAATTTTACATA
34978107 GTGAACAATTTTACAT
1 GTGAACAATTTTACAT
34978123 TTAGATGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
GTGAACAATTTTACATA
Found at i:34984558 original size:22 final size:22
Alignment explanation
Indices: 34984521--34984563 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
34984511 GTTATCAATG
*
34984521 GCAGTTTATCTACAAACCAGTA
1 GCAGTTTACCTACAAACCAGTA
* *
34984543 GCAGTTTACCTGCAAATCAGT
1 GCAGTTTACCTACAAACCAGT
34984564 GGTGGCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (22 bp):
GCAGTTTACCTACAAACCAGTA
Found at i:34993299 original size:189 final size:189
Alignment explanation
Indices: 34993061--34993403 Score: 580
Period size: 189 Copynumber: 1.8 Consensus size: 189
34993051 TCCAATATCA
* *
34993061 ATACTTTTCATATGGTATTGATAAAAGTCCATTTGTATTGATATCTTTAGCTCCAACGGTCTCTG
1 ATACTTTTCATATGGTATCGATAAAAGTCCATTTGTATTGATATCTTTAGCTCCAACGGTCACTG
* * * *
34993126 AAGTTTGCATTAAGTGCTAATAGTATTGATACTCGTAGACAAAGTATCAATACCTTTTGTTGCAG
66 AACTTTGCATTAAATGCTAATAGTATTGATACTCATAGACAAAGTATCAATACCTTTTGTTGCAA
*
34993191 GTGAATTTAATGATATGGTATTTTTACATTTTGTTTTCAACCAATTTAGCTAAGTACTG
131 GTAAATTTAATGATATGGTATTTTTACATTTTGTTTTCAACCAATTTAGCTAAGTACTG
*
34993250 ATACTTTTCCTA-GGTATCGATAAAAGTCCATTTGTATTCGATATCTTTAGCTCCAACGGTCACT
1 ATACTTTTCATATGGTATCGATAAAAGTCCATTTGTATT-GATATCTTTAGCTCCAACGGTCACT
*
34993314 GAACTTTGCATTAAATGCTAATAGTATTGATACTCATAGACAAAGTATCGATACCTTTTGTTGCA
65 GAACTTTGCATTAAATGCTAATAGTATTGATACTCATAGACAAAGTATCAATACCTTTTGTTGCA
*
34993379 AGTAAATTTAATGATCTGGTATTTT
130 AGTAAATTTAATGATATGGTATTTT
34993404 CATCTCCAAC
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
188 25 0.17
189 118 0.83
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.40
Consensus pattern (189 bp):
ATACTTTTCATATGGTATCGATAAAAGTCCATTTGTATTGATATCTTTAGCTCCAACGGTCACTG
AACTTTGCATTAAATGCTAATAGTATTGATACTCATAGACAAAGTATCAATACCTTTTGTTGCAA
GTAAATTTAATGATATGGTATTTTTACATTTTGTTTTCAACCAATTTAGCTAAGTACTG
Found at i:34993819 original size:29 final size:29
Alignment explanation
Indices: 34993777--34993834 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
34993767 AAGGGAGATT
34993777 GTGAGGTTAAACCTTGTCCTCAAAAGTTG
1 GTGAGGTTAAACCTTGTCCTCAAAAGTTG
34993806 GTGAGGTTAAACCTTGTCCTCAAAAGTTG
1 GTGAGGTTAAACCTTGTCCTCAAAAGTTG
34993835 TTAACTTAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (29 bp):
GTGAGGTTAAACCTTGTCCTCAAAAGTTG
Found at i:34994383 original size:33 final size:35
Alignment explanation
Indices: 34994346--34994421 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 35
34994336 AAGATTGACT
*
34994346 TTTGCTATTGAATT-ACCTGTTATAAGCATATT-A
1 TTTGCTATTGAATTGAACTGTTATAAGCATATTGA
* * *
34994379 TTTGCTACTGTATTGAACTGTTATAGGCATATTGA
1 TTTGCTATTGAATTGAACTGTTATAAGCATATTGA
34994414 -TTGCTATT
1 TTTGCTATT
34994422 ATATTGTTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 12 0.33
34 23 0.64
35 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (35 bp):
TTTGCTATTGAATTGAACTGTTATAAGCATATTGA
Found at i:34994807 original size:97 final size:97
Alignment explanation
Indices: 34994595--34994795 Score: 305
Period size: 97 Copynumber: 2.1 Consensus size: 97
34994585 TTGCTCAACT
* * ** *
34994595 AGTGGTTCATCCACAACGTATTAGCAGCTTTTATTTACACAGACGGATGGTTTATCCACAAATAT
1 AGTGGTTCATCCACAACATATTAGCAGCTTTTATCTACACAGACAAATAGTTTATCCACAAATAT
* *
34994660 ATTCTTATCATTAGCAGTCATCTGTAATGATC
66 ATTCTTATCATTAACAGTCATCTGCAATGATC
*
34994692 AGTGGTTCATCCACAACATATTAGCAGCTTTTATCTGCACAGACAAATAGTTTATCCACAAATAT
1 AGTGGTTCATCCACAACATATTAGCAGCTTTTATCTACACAGACAAATAGTTTATCCACAAATAT
*
34994757 ATT-TTATCATTAACAATTCATCTGCAATGATC
66 ATTCTTATCATTAAC-AGTCATCTGCAATGATC
34994789 AGTGGTT
1 AGTGGTT
34994796 TATTCATAAC
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
96 10 0.11
97 84 0.89
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (97 bp):
AGTGGTTCATCCACAACATATTAGCAGCTTTTATCTACACAGACAAATAGTTTATCCACAAATAT
ATTCTTATCATTAACAGTCATCTGCAATGATC
Found at i:34995927 original size:42 final size:42
Alignment explanation
Indices: 34995825--34995931 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
34995815 CATGTTTATA
* **
34995825 CTTCGATTTAT-TCGATGATGCACTTACATGCTAGTATATTTG
1 CTTCGGTTTATCT-GATGATGCACTTACATGAAAGTATATTTG
** ** **
34995867 CTTCGGTACATCCAATGATGCACTTATGTGAAAGTATATTTG
1 CTTCGGTTTATCTGATGATGCACTTACATGAAAGTATATTTG
34995909 CTTCGGTTTATCTGATGATGCAC
1 CTTCGGTTTATCTGATGATGCAC
34995932 AATGTGTGCC
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (42 bp):
CTTCGGTTTATCTGATGATGCACTTACATGAAAGTATATTTG
Found at i:34995969 original size:43 final size:43
Alignment explanation
Indices: 34995857--34996060 Score: 137
Period size: 43 Copynumber: 4.8 Consensus size: 43
34995847 CTTACATGCT
* * * * * * **
34995857 AGTATATTTGCTTCGGTACATCCAATGATGCAC-TTATGTGAA
1 AGTATAATTGCTTCGATTCATCCGATGATGCACAATGTGTGCC
* * * *
34995899 AGTATATTTGCTTCGGTTTATCTGATGATGCACAATGTGTGCC
1 AGTATAATTGCTTCGATTCATCCGATGATGCACAATGTGTGCC
* **
34995942 AGTATAATTGCTTCGATTCGTCCGATGATGCACCTTGTGTGCC
1 AGTATAATTGCTTCGATTCATCCGATGATGCACAATGTGTGCC
* * * * *
34995985 AGTATAATTGTTTTGGCTTGC-T-CGATGATGCACTATGTGTGCT
1 AGTATAATTG-CTTCGATT-CATCCGATGATGCACAATGTGTGCC
** * *
34996028 AGTATCTTTCCTTCGATAT-ATCCAATGATGCAC
1 AGTATAATTGCTTCGAT-TCATCCGATGATGCAC
34996061 TATGATGCTA
Statistics
Matches: 128, Mismatches: 28, Indels: 11
0.77 0.17 0.07
Matches are distributed among these distances:
42 34 0.27
43 87 0.68
44 6 0.05
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.38
Consensus pattern (43 bp):
AGTATAATTGCTTCGATTCATCCGATGATGCACAATGTGTGCC
Found at i:34996056 original size:86 final size:85
Alignment explanation
Indices: 34995836--34996060 Score: 222
Period size: 86 Copynumber: 2.6 Consensus size: 85
34995826 TTCGATTTAT
*** * *
34995836 TCGATGATGCACT-TACATGCTAGTATATTTGCTTCGGTACATCCAATGATGCA-CTTATGTGAA
1 TCGATGATGCACTATGTGTGCTAGTATATTTGCTTCGATATATCCAATGATGCACCTTATGTGAA
* *
34995899 AGTATATTTGCTTCGGTTTA
66 AGTATAATTGCTTCGGTTGA
* * * * * *
34995919 TCTGATGATGCACAATGTGTGCCAGTATAATTGCTTCGAT-TCGTCCGATGATGCACCTTGTGTG
1 TC-GATGATGCACTATGTGTGCTAGTATATTTGCTTCGATAT-ATCCAATGATGCACCTTATGTG
** * * *
34995983 CCAGTATAATTGTTTTGGCTTGC
64 AAAGTATAATTGCTTCGG-TTGA
* *
34996006 TCGATGATGCACTATGTGTGCTAGTATCTTTCCTTCGATATATCCAATGATGCAC
1 TCGATGATGCACTATGTGTGCTAGTATATTTGCTTCGATATATCCAATGATGCAC
34996061 TATGATGCTA
Statistics
Matches: 111, Mismatches: 25, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
83 2 0.02
84 10 0.09
85 30 0.27
86 64 0.58
87 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (85 bp):
TCGATGATGCACTATGTGTGCTAGTATATTTGCTTCGATATATCCAATGATGCACCTTATGTGAA
AGTATAATTGCTTCGGTTGA
Found at i:35007283 original size:5 final size:5
Alignment explanation
Indices: 35007275--35007324 Score: 82
Period size: 5 Copynumber: 9.8 Consensus size: 5
35007265 AGGTTTTTAT
*
35007275 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TCTTC TTTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTT
35007325 TGTTGTAGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
5 38 0.90
6 4 0.10
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:35016987 original size:21 final size:21
Alignment explanation
Indices: 35016961--35017003 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
35016951 TAGACCAAGT
*
35016961 GGGGGTCAACATACCCATGTG
1 GGGGGTCAACACACCCATGTG
*
35016982 GGGGGTCAACACATCCATGTG
1 GGGGGTCAACACACCCATGTG
35017003 G
1 G
35017004 ATGAGGCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (21 bp):
GGGGGTCAACACACCCATGTG
Found at i:35017725 original size:15 final size:15
Alignment explanation
Indices: 35017705--35017735 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
35017695 ACGTCCAAAG
35017705 AAAATAAAAATAATC
1 AAAATAAAAATAATC
35017720 AAAATAAAAATAATC
1 AAAATAAAAATAATC
35017735 A
1 A
35017736 TAACAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAATAAAAATAATC
Found at i:35018271 original size:5 final size:5
Alignment explanation
Indices: 35018261--35018294 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
35018251 ATTAATTAAT
35018261 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
35018295 TTATTTCCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:35022798 original size:44 final size:44
Alignment explanation
Indices: 35022693--35022798 Score: 160
Period size: 44 Copynumber: 2.4 Consensus size: 44
35022683 TTGACCCGCT
* * * *
35022693 CCACTGCAACCTCAGGGAAATCGGACTCATATCTTCAACTGGTC
1 CCACTGCAACTTCAGGGGAATCGAACCCATATCTTCAACTGGTC
35022737 CCACTGCAACTTCAGGGGAATCGAACCCATATCTTCAACTGG-C
1 CCACTGCAACTTCAGGGGAATCGAACCCATATCTTCAACTGGTC
35022780 CCTACTGCAACTTCAGGGG
1 CC-ACTGCAACTTCAGGGG
35022799 GATAAGATTC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
43 3 0.05
44 54 0.95
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGGAATCGAACCCATATCTTCAACTGGTC
Found at i:35023112 original size:33 final size:33
Alignment explanation
Indices: 35023070--35023135 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
35023060 CTCAGGGAGA
35023070 AAGGATTCGTGGCTTAAATCTGCTTCCTTACAC
1 AAGGATTCGTGGCTTAAATCTGCTTCCTTACAC
35023103 AAGGATTCGTGGCTTAAATCTGCTTCCTTACAC
1 AAGGATTCGTGGCTTAAATCTGCTTCCTTACAC
35023136 TTGAAGATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (33 bp):
AAGGATTCGTGGCTTAAATCTGCTTCCTTACAC
Found at i:35023271 original size:128 final size:128
Alignment explanation
Indices: 35023115--35023370 Score: 417
Period size: 128 Copynumber: 2.0 Consensus size: 128
35023105 GGATTCGTGG
* * * *
35023115 CTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTG-TCGTCTTCGATCTGCTCTGCTACTGCT
1 CTTAAATCTGATTCCTTACACTTAAAGATAAGATTCGCT-GTCTCCGATCTGCTCTGCTACTGCT
* * *
35023179 TAGGGAGGCGAGATCTGTAATTT-TCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGA
65 TAGGGAGACAAGATCTGTAATTTCT-AACCTATTCCACTGCTGGTCAAGGACATAGGACTTGTGA
35023243 CTTAAATCTGATTCCTTACACTTAAAGATAAGATTCGCTGTCTCCGATCTGCTCTGCTACTGCTT
1 CTTAAATCTGATTCCTTACACTTAAAGATAAGATTCGCTGTCTCCGATCTGCTCTGCTACTGCTT
35023308 AGGGAGACAAGATCTGTAATTTCTAACCTATTCCACTGCTGGTCAAGGACATAGGACTTGTGA
66 AGGGAGACAAGATCTGTAATTTCTAACCTATTCCACTGCTGGTCAAGGACATAGGACTTGTGA
35023371 TTTCACCGAT
Statistics
Matches: 119, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
128 117 0.98
129 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (128 bp):
CTTAAATCTGATTCCTTACACTTAAAGATAAGATTCGCTGTCTCCGATCTGCTCTGCTACTGCTT
AGGGAGACAAGATCTGTAATTTCTAACCTATTCCACTGCTGGTCAAGGACATAGGACTTGTGA
Found at i:35024604 original size:6 final size:6
Alignment explanation
Indices: 35024595--35024628 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
35024585 CATTTTTACT
35024595 TTTTCA TTTTTCA TTTCTCA TTTTCA TTTTCA TT
1 TTTTCA -TTTTCA TTT-TCA TTTTCA TTTTCA TT
35024629 CTTTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 14 0.54
7 12 0.46
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTTCA
Done.