Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 110 of 141
Found at i:35585711 original size:91 final size:90
Alignment explanation
Indices: 35585558--35585801 Score: 296
Period size: 91 Copynumber: 2.7 Consensus size: 90
35585548 GTATTTTGGA
* * **
35585558 AATTGAG-A-AAAAAAAGGAGCATGGGCTTAATTGCTTTTGTTGAAAATTTTTGAGGGTCTTTTT
1 AATTGAGTATAAAAAAAGGAGCATGGGCTTAATTACTTTTTTTGAAAAAGTTTGAGGG-CTTTTT
* *
35585621 GATGCATTTTGACAGTTCAAGTACCC
65 GATGCATTTTAAAAGTTCAAGTACCC
35585647 AATTGAGTATAAAAAAAGGAGCATGGGCTTAATTACTTTTTTTGAAAAAGTTTGAGGGCCTTTTT
1 AATTGAGTATAAAAAAAGGAGCATGGGCTTAATTACTTTTTTTGAAAAAGTTTGAGGG-CTTTTT
*
35585712 GATGCATTTTAAAAGTTTAAGTACCC
65 GATGCATTTTAAAAGTTCAAGTACCC
* * * * * * * * *
35585738 AATTGAGTGTCAAAAAAA-CAACAAGAGTTTAATTTCTTTTTCTAAAAAAGTTTGAGGGCTTTTT
1 AATTGAGTAT-AAAAAAAGGAGCATGGGCTTAATTACTTTTTTTGAAAAAGTTTGAGGGCTTTTT
35585802 ACACCCTTAA
Statistics
Matches: 135, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
89 7 0.05
90 7 0.05
91 114 0.84
92 7 0.05
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (90 bp):
AATTGAGTATAAAAAAAGGAGCATGGGCTTAATTACTTTTTTTGAAAAAGTTTGAGGGCTTTTTG
ATGCATTTTAAAAGTTCAAGTACCC
Found at i:35592151 original size:27 final size:27
Alignment explanation
Indices: 35592115--35592183 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
35592105 AAATTAAAAA
*
35592115 TTACCAAAATGT-TATAATTTTTTTTAT
1 TTACCAAAATATATATAA-TTTTTTTAT
35592142 TTACCAAAATATATATAATTTTTTTAT
1 TTACCAAAATATATATAATTTTTTTAT
*
35592169 TTACTAAAATATATA
1 TTACCAAAATATATA
35592184 AAAAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 34 0.87
28 5 0.13
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (27 bp):
TTACCAAAATATATATAATTTTTTTAT
Found at i:35592289 original size:27 final size:27
Alignment explanation
Indices: 35592247--35592353 Score: 160
Period size: 27 Copynumber: 4.0 Consensus size: 27
35592237 ACTCCCTGGG
**
35592247 ACAAGGGAACATTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
35592274 ACAAGGGAACCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
35592301 ACAAGGGTTCCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
35592328 ACAAGGGTTCCCTGTTGGCGGCACCA
1 ACAAGGGAACCCTGTTGGCGGCACCA
35592354 CTCGTGTTAT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.26, C:0.28, G:0.30, T:0.16
Consensus pattern (27 bp):
ACAAGGGAACCCTGTTGGCGGCACCAA
Found at i:35592648 original size:3 final size:3
Alignment explanation
Indices: 35592640--35592680 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
35592630 AATTTTATAG
35592640 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
35592681 NNNNNNNNNN
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:35593228 original size:18 final size:18
Alignment explanation
Indices: 35593205--35593249 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
35593195 TTGATATGGT
*
35593205 TGGTGGTGAAGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
35593223 TGGTGGCGAAGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
35593241 TGGTGGCGA
1 TGGTGGCGA
35593250 TCATTGGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.29, C:0.04, G:0.51, T:0.16
Consensus pattern (18 bp):
TGGTGGCGAAGAAGAAGG
Found at i:35597174 original size:31 final size:32
Alignment explanation
Indices: 35597122--35597271 Score: 92
Period size: 38 Copynumber: 4.3 Consensus size: 32
35597112 AATACCTTAT
35597122 TTTCTTTTTTTTCCTTCCTT-CCCTCTT-CTTCTTC
1 TTTCTTTTTTTT-C-TCCTTCCCCT-TTCCTT-TTC
35597156 TTTCTTTTTTTTCT-CTTCCCCTTTCCTTTTC
1 TTTCTTTTTTTTCTCCTTCCCCTTTCCTTTTC
35597187 TTTCCTTATTTTTCTTTCTTTCC-TCCCCTTTCCTTTTC
1 TTT-C---TTTTT-TTTC--TCCTTCCCCTTTCCTTTTC
* *
35597225 TTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCTTTTC
1 TTT-CTT-TTTTT-TCTCCTT-C-C-CCTTTCCTTTTC
*
35597263 CTTCTTTTT
1 TTTCTTTTT
35597272 CTTGCTTCCT
Statistics
Matches: 97, Mismatches: 3, Indels: 30
0.75 0.02 0.23
Matches are distributed among these distances:
31 11 0.11
32 9 0.09
33 1 0.01
34 14 0.14
35 10 0.10
36 12 0.12
37 4 0.04
38 35 0.36
39 1 0.01
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (32 bp):
TTTCTTTTTTTTCTCCTTCCCCTTTCCTTTTC
Found at i:35597204 original size:18 final size:18
Alignment explanation
Indices: 35597183--35597293 Score: 86
Period size: 18 Copynumber: 6.1 Consensus size: 18
35597173 CCCCTTTCCT
*
35597183 TTTCTTTCCTTATTTTTC
1 TTTCTTTCCTTCTTTTTC
* * *
35597201 TTTCTTTCCTCCCCTTTCC
1 TTTCTTTCCT-TCTTTTTC
35597220 TTTTCTTTCCTTCTTTTTC
1 -TTTCTTTCCTTCTTTTTC
*
35597239 TTTCTTTCC-TCTCCTTTC
1 TTTCTTTCCTTCT-TTTTC
*
35597257 -CT-TTTCCTTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
*
35597273 TTGC-TTCCTTTCTTTCTTC
1 TTTCTTTCC-TTCTTT-TTC
35597292 TT
1 TT
35597294 CTTCCCCTCT
Statistics
Matches: 73, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
16 9 0.12
17 11 0.15
18 29 0.40
19 14 0.19
20 10 0.14
ACGTcount: A:0.01, C:0.32, G:0.01, T:0.66
Consensus pattern (18 bp):
TTTCTTTCCTTCTTTTTC
Found at i:35597245 original size:28 final size:28
Alignment explanation
Indices: 35597214--35597293 Score: 76
Period size: 34 Copynumber: 2.8 Consensus size: 28
35597204 CTTTCCTCCC
*
35597214 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
1 CTTTCCTTTTCTTTCCTTCTTTTTCTTG
35597242 CTTTCCTCTCCTTTCCTTTTCCTTCTTTTTCTTG
1 CTTT-C-CT--TTT-C-TTTCCTTCTTTTTCTTG
35597276 C-TTCC-TTTCTTT-CTTCTT
1 CTTTCCTTTTCTTTCCTTCTT
35597294 CTTCCCCTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 15
0.74 0.02 0.25
Matches are distributed among these distances:
25 6 0.13
26 3 0.07
27 1 0.02
28 7 0.16
29 1 0.02
30 2 0.04
31 1 0.02
32 4 0.09
33 3 0.07
34 17 0.38
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.66
Consensus pattern (28 bp):
CTTTCCTTTTCTTTCCTTCTTTTTCTTG
Found at i:35597284 original size:38 final size:38
Alignment explanation
Indices: 35597172--35597262 Score: 164
Period size: 38 Copynumber: 2.4 Consensus size: 38
35597162 TTTTTTCTCT
35597172 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
1 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
*
35597210 TCCCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
*
35597248 TCTCCTTTCCTTTTC
1 TCCCCTTTCCTTTTC
35597263 CTTCTTTTTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.01, C:0.36, G:0.00, T:0.63
Consensus pattern (38 bp):
TCCCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
Found at i:35597289 original size:22 final size:23
Alignment explanation
Indices: 35597254--35597296 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
35597244 TTCCTCTCCT
*
35597254 TTCCTTTTCCTTCTTTTTCTTGC
1 TTCCTTTTCCTTCTTCTTCTTGC
*
35597277 TTCC-TTTCTTTCTTCTTCTT
1 TTCCTTTTCCTTCTTCTTCTT
35597297 CCCCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.00, C:0.30, G:0.02, T:0.67
Consensus pattern (23 bp):
TTCCTTTTCCTTCTTCTTCTTGC
Found at i:35597294 original size:28 final size:30
Alignment explanation
Indices: 35597216--35597297 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 30
35597206 TTCCTCCCCT
*
35597216 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TTCC-TTTCTTT-CTTCTTCTTCTTTCTTTCC
* *
35597248 TCTCCTTTCCTTT-TCCTTCTT-TTTC-TTGC
1 T-TCCTTT-CTTTCTTCTTCTTCTTTCTTTCC
35597277 TTCCTTTCTTTCTTCTTCTTC
1 TTCCTTTCTTTCTTCTTCTTC
35597298 CCCTCTCCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
27 4 0.10
28 13 0.31
29 4 0.10
30 4 0.10
31 6 0.14
32 4 0.10
33 7 0.17
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.66
Consensus pattern (30 bp):
TTCCTTTCTTTCTTCTTCTTCTTTCTTTCC
Found at i:35597508 original size:27 final size:26
Alignment explanation
Indices: 35597449--35597508 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 26
35597439 TTTTTGTTTT
35597449 TTTATATATTTTGGTAAATAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAA
35597475 TTATATATATTTTGGTAAATAAAAAAAA
1 TT-TATATATTTTGGTAAAT-AAAAAAA
35597503 TTTATA
1 TTTATA
35597509 ACATTTTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 2 0.06
27 21 0.66
28 9 0.28
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (26 bp):
TTTATATATTTTGGTAAATAAAAAAA
Found at i:35597514 original size:28 final size:27
Alignment explanation
Indices: 35597451--35597516 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
35597441 TTTGTTTTTT
*
35597451 TATATATTTTGGTAAATAAAAAAATTA
1 TATACATTTTGGTAAATAAAAAAATTA
*
35597478 TATATATTTTGGTAAATAAAAAAAATT-
1 TATACATTTTGGTAAAT-AAAAAAATTA
35597505 TATAACATTTTG
1 TAT-ACATTTTG
35597517 ATAATTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (27 bp):
TATACATTTTGGTAAATAAAAAAATTA
Found at i:35605072 original size:33 final size:33
Alignment explanation
Indices: 35605035--35605100 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
35605025 GTTGTTTGTG
*
35605035 TTTGCTCATGTTTGCTACCATTTTGTTCCAACA
1 TTTGCTCATGTTTGCTACCATTTTGTCCCAACA
*
35605068 TTTGCTCATGTTTGCTGCCATTTTGTCCCAACA
1 TTTGCTCATGTTTGCTACCATTTTGTCCCAACA
35605101 AATGGTAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.17, C:0.26, G:0.14, T:0.44
Consensus pattern (33 bp):
TTTGCTCATGTTTGCTACCATTTTGTCCCAACA
Found at i:35606916 original size:18 final size:19
Alignment explanation
Indices: 35606893--35606930 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
35606883 AGGCATTTGG
* *
35606893 AGCTTTTGCA-AAATTCAA
1 AGCTTTGGCAGAAAATCAA
35606911 AGCTTTGGCAGAAAATCAA
1 AGCTTTGGCAGAAAATCAA
35606930 A
1 A
35606931 CAGGCTGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (19 bp):
AGCTTTGGCAGAAAATCAA
Found at i:35609570 original size:33 final size:33
Alignment explanation
Indices: 35609533--35609598 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
35609523 CTTGTTTATG
* *
35609533 TTTGCTCATGTTTGCTGTCATTTTGTTCCAACA
1 TTTGCTCATGTTTGCTGCCATTTTGTCCCAACA
35609566 TTTGCTCATGTTTGCTGCCATTTTGTCCCAACA
1 TTTGCTCATGTTTGCTGCCATTTTGTCCCAACA
35609599 GATATAACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.45
Consensus pattern (33 bp):
TTTGCTCATGTTTGCTGCCATTTTGTCCCAACA
Found at i:35615184 original size:127 final size:127
Alignment explanation
Indices: 35614958--35615217 Score: 459
Period size: 127 Copynumber: 2.0 Consensus size: 127
35614948 TAGGATTAAC
*
35614958 AATAAACCACAAATTAGAAGTAAATCGGATCCGTTTTACCAAATACAATCTTTAAGATTGTAGTT
1 AATAAACCACAAATTAGAAGTAAAACGGATCCGTTTTACCAAATACAATCTTTAAGATTGTAGTT
* *
35615023 CGGATTCTTAAAAATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
66 AGGAGTCTTAAAAATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
*
35615085 AATAAACCACAATTTAGAAGTAAAACGGATCCGTTTTACCAAATACAATCTTTAAGATTGTAGTT
1 AATAAACCACAAATTAGAAGTAAAACGGATCCGTTTTACCAAATACAATCTTTAAGATTGTAGTT
*
35615150 ATGAGTCTTAAACAA-ACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
66 AGGAGTCTTAAA-AATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
35615212 AATAAA
1 AATAAA
35615218 TTATTCTTTG
Statistics
Matches: 127, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
127 125 0.98
128 2 0.02
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (127 bp):
AATAAACCACAAATTAGAAGTAAAACGGATCCGTTTTACCAAATACAATCTTTAAGATTGTAGTT
AGGAGTCTTAAAAATACACTTAAAAGTGATAAAACTGTAAAAACTTATAAATTTCTCAAGAG
Found at i:35616028 original size:40 final size:41
Alignment explanation
Indices: 35615956--35616169 Score: 254
Period size: 41 Copynumber: 5.3 Consensus size: 41
35615946 TAACAAAATG
* * ** *
35615956 TTTGCCGCGTTTATGGGAAAAACGCCGTTATTGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACATCGCTATTGCTTTACCT
* * *
35615997 TTAGCGGCGTTTATGA-AAAAATATTGCTATTGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACATCGCTATTGCTTTACCT
***
35616037 TTTGCGGCGTTTATGAGAAAAATGCCGCTATTGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACATCGCTATTGCTTTACCT
* *
35616078 TTTGCGGCGTTTATGAGAAAAGCATCGCTATTACTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACATCGCTATTGCTTTACCT
* * * *
35616119 TTTGCGGCGTTTATG-GAAAAACGTTGCTAAT-CCTTACCT
1 TTTGCGGCGTTTATGAGAAAAACATCGCTATTGCTTTACCT
35616158 TTTGCGGCGTTT
1 TTTGCGGCGTTT
35616170 TCGATCTGAA
Statistics
Matches: 150, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
39 19 0.13
40 46 0.31
41 85 0.57
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (41 bp):
TTTGCGGCGTTTATGAGAAAAACATCGCTATTGCTTTACCT
Found at i:35616091 original size:81 final size:81
Alignment explanation
Indices: 35615956--35616169 Score: 288
Period size: 81 Copynumber: 2.6 Consensus size: 81
35615946 TAACAAAATG
* * * *
35615956 TTTGCCGCGTTTATGGGAAAAACGCCGTTATTGCTTTACCTTTAGCGGCGTTTATGA-AAAAATA
1 TTTGCGGCGTTTAT-GGAAAAACGCCGCTATTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACA
* *
35616020 TTGCTATTGCTTTACCT
65 TCGCTATTACTTTACCT
* *
35616037 TTTGCGGCGTTTATGAGAAAAATGCCGCTATTGCTTTACCTTTTGCGGCGTTTATGAGAAAAGCA
1 TTTGCGGCGTTTATG-GAAAAACGCCGCTATTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACA
35616102 TCGCTATTACTTTACCT
65 TCGCTATTACTTTACCT
** * *
35616119 TTTGCGGCGTTTATGGAAAAACGTTGCTAAT-CCTTACCTTTTGCGGCGTTT
1 TTTGCGGCGTTTATGGAAAAACGCCGCTATTGCTTTACCTTTTGCGGCGTTT
35616170 TCGATCTGAA
Statistics
Matches: 118, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
80 20 0.17
81 63 0.53
82 35 0.30
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (81 bp):
TTTGCGGCGTTTATGGAAAAACGCCGCTATTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACAT
CGCTATTACTTTACCT
Found at i:35623276 original size:6 final size:6
Alignment explanation
Indices: 35623265--35623299 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
35623255 TTAGATTAGG
35623265 TTTTAT TTTTAT TTTTAT TTTTAT CTTTT-T TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT -TTTTAT TTTTA
35623300 ATTTCATGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 4 0.15
6 19 0.70
7 4 0.15
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:35623923 original size:31 final size:32
Alignment explanation
Indices: 35623878--35623940 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
35623868 AGATAATTTT
35623878 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
35623910 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
35623941 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.81
32 6 0.19
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.43
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTTG
Found at i:35629002 original size:6 final size:6
Alignment explanation
Indices: 35628984--35629035 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
35628974 GTCAAAGGAT
* * * * *
35628984 GAGTAG GAGTGG GAATGG GAGTGG GAGTGG GAGTAG GAGTAG GAGTGA
1 GAGTGG GAGTGG GAGTGG GAGTGG GAGTGG GAGTGG GAGTGG GAGTGG
35629032 GAGT
1 GAGT
35629036 AGATGAGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.27, C:0.00, G:0.56, T:0.17
Consensus pattern (6 bp):
GAGTGG
Found at i:35629035 original size:18 final size:18
Alignment explanation
Indices: 35628984--35629037 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
35628974 GTCAAAGGAT
* *
35628984 GAGTAGGAGTGGGAATGG
1 GAGTAGGAGTGGGAGTAG
*
35629002 GAGTGGGAGTGGGAGTAG
1 GAGTAGGAGTGGGAGTAG
*
35629020 GAGTAGGAGTGAGAGTAG
1 GAGTAGGAGTGGGAGTAG
35629038 ATGAGTTAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.28, C:0.00, G:0.56, T:0.17
Consensus pattern (18 bp):
GAGTAGGAGTGGGAGTAG
Found at i:35643426 original size:23 final size:24
Alignment explanation
Indices: 35643375--35643432 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
35643365 AGTACTACTA
* *
35643375 AAATCCAAAAAAACTCAACTAATT
1 AAATCCAAAAAAACTCAACAAAAT
* *
35643399 AAATCGAAAAAATCTCAACAAAAT
1 AAATCCAAAAAAACTCAACAAAAT
*
35643423 -AATCCTAAAA
1 AAATCCAAAAA
35643433 GATAAAGATT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 8 0.29
24 20 0.71
ACGTcount: A:0.60, C:0.19, G:0.02, T:0.19
Consensus pattern (24 bp):
AAATCCAAAAAAACTCAACAAAAT
Found at i:35644936 original size:43 final size:43
Alignment explanation
Indices: 35644879--35645063 Score: 244
Period size: 43 Copynumber: 4.3 Consensus size: 43
35644869 TTTTTCACAT
* *
35644879 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
* * *
35644922 AAACGCCGATAAAGATCATGACCTTTAGCGGTGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
* * *
35644965 AATCGCCGCTAAAGAAAATAACCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
* * * * *
35645008 AAGCGTCACTAAATAACATGACCTTTAGCAGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
*
35645051 AAACACCGCTAAA
1 AAACGCCGCTAAA
35645064 ATTACCGTTT
Statistics
Matches: 120, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
Found at i:35651141 original size:9 final size:9
Alignment explanation
Indices: 35651089--35651430 Score: 219
Period size: 9 Copynumber: 39.1 Consensus size: 9
35651079 TAAGTATAAC
*
35651089 TAAGTTGTG
1 TAAGTTATG
35651098 TAAGTTATG
1 TAAGTTATG
* * *
35651107 ATATGATATA
1 -TAAGTTATG
*
35651117 T-ATTTATG
1 TAAGTTATG
35651125 T-A-TTATG
1 TAAGTTATG
35651132 TAAGTTATG
1 TAAGTTATG
35651141 TAAGTTATG
1 TAAGTTATG
* *
35651150 TGAGTTAAG
1 TAAGTTATG
*
35651159 TAAATTATG
1 TAAGTTATG
*
35651168 TAAGTTTTG
1 TAAGTTATG
* * *
35651177 ATATGATATA
1 -TAAGTTATG
*
35651187 T-ATTTATG
1 TAAGTTATG
*
35651195 TAATTTATG
1 TAAGTTATG
*
35651204 TAAGTTGTG
1 TAAGTTATG
35651213 TAAGTTATG
1 TAAGTTATG
35651222 TAAGTTA--
1 TAAGTTATG
*
35651229 T-ATTTATG
1 TAAGTTATG
*
35651237 T-A-TTACG
1 TAAGTTATG
35651244 TAAGTTATG
1 TAAGTTATG
35651253 TAAGTTATG
1 TAAGTTATG
35651262 T-A-TTATG
1 TAAGTTATG
**
35651269 TAAGTATAAA
1 TAAGT-TATG
35651279 TAAGTTATG
1 TAAGTTATG
*
35651288 TAAGTTACG
1 TAAGTTATG
* * *
35651297 ATATGATATA
1 -TAAGTTATG
*
35651307 T-ATTTATG
1 TAAGTTATG
35651315 T-A-TTATG
1 TAAGTTATG
35651322 TAAGTTATG
1 TAAGTTATG
*
35651331 TGAGTTATG
1 TAAGTTATG
*
35651340 TGAGTTATG
1 TAAGTTATG
35651349 TAAGTTATG
1 TAAGTTATG
*
35651358 TAAATTATG
1 TAAGTTATG
35651367 TAAGTTATG
1 TAAGTTATG
*
35651376 TAAGTTTTG
1 TAAGTTATG
* * *
35651385 ATATGATATA
1 -TAAGTTATG
*
35651395 T-ATTTATG
1 TAAGTTATG
* *
35651403 TAAATAATG
1 TAAGTTATG
35651412 TAAGTTATG
1 TAAGTTATG
*
35651421 TATGTTATG
1 TAAGTTATG
35651430 T
1 T
35651431 GGAAATTAGT
Statistics
Matches: 256, Mismatches: 60, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
6 4 0.02
7 24 0.09
8 25 0.10
9 175 0.68
10 28 0.11
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:35651228 original size:72 final size:70
Alignment explanation
Indices: 35651096--35651430 Score: 292
Period size: 70 Copynumber: 4.8 Consensus size: 70
35651086 AACTAAGTTG
*
35651096 TGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGTGAGTTAAGTA
1 TGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAGTA
35651161 AATTA
66 AATTA
* *
35651166 TGTAAGTTTTGATATGATATATATTTATGTAATTTATGTAAGTTGTGTAAGTTATGTAAGTT-A-
1 TGTAAGTTATGATATGATATATATTTATGT-A-TTATGTAAGTTATGTAAGTTATGTAAGTTAAG
*
35651229 T-ATTTA
64 TAAATTA
* * * * * ** *
35651235 TGT-A-TTACG-TAAGTTATGTAAGTTATGTATTATGTAAGTATAAATAAGTTATGTAAGTTACG
1 TGTAAGTTATGATATGATATAT-ATTTATGTATTATGTAAGT-TATGTAAGTTATGTAAGTTAAG
* *
35651297 -ATATGA
64 TAAATTA
* * * * * * * *
35651303 TATATATTTATG-TATTATGTA-AGTTATGTGAGTTATGTGAGTTATGTAAGTTATGTAAATTAT
1 TGTA-AGTTATGATATGATATATATTTATGT-A-TTATGTAAGTTATGTAAGTTATGTAAGTTAA
*
35651366 GTAAGTTA
63 GTAAATTA
* * *
35651374 TGTAAGTTTTGATATGATATATATTTATGTAAATAATGTAAGTTATGTATGTTATGT
1 TGTAAGTTATGATATGATATATATTTATGT--ATTATGTAAGTTATGTAAGTTATGT
35651431 GGAAATTAGT
Statistics
Matches: 207, Mismatches: 42, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
65 10 0.05
66 24 0.12
67 10 0.05
68 5 0.02
69 15 0.07
70 55 0.27
71 32 0.15
72 55 0.27
73 1 0.00
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.47
Consensus pattern (70 bp):
TGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAGTA
AATTA
Found at i:35651444 original size:45 final size:43
Alignment explanation
Indices: 35651307--35651444 Score: 117
Period size: 45 Copynumber: 3.1 Consensus size: 43
35651297 ATATGATATA
*
35651307 TATTTATGT--ATTATGTAAGTTATGTGAGTTATGTG-AGTTATG
1 TATTTATGTAAATTATGTAAGTTATGT-AGTTATGTGAAATTA-G
*
35651349 TAAGTTATGTAAATTATGTAAGTTATGTAAGTT-T-TGATATGATATA-
1 T-ATTTATGTAAATTATGTAAGTTATGT-AGTTATGTGA-A--AT-TAG
*
35651395 TATTTATGTAAATAATGTAAGTTATGTATGTTATGTGGAAATTAG
1 TATTTATGTAAATTATGTAAGTTATGTA-GTTATGT-GAAATTAG
35651440 TATTT
1 TATTT
35651445 CAAGATTTGT
Statistics
Matches: 78, Mismatches: 5, Indels: 23
0.74 0.05 0.22
Matches are distributed among these distances:
42 1 0.01
43 9 0.12
44 4 0.05
45 55 0.71
46 2 0.03
47 3 0.04
48 4 0.05
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (43 bp):
TATTTATGTAAATTATGTAAGTTATGTAGTTATGTGAAATTAG
Found at i:35653100 original size:228 final size:226
Alignment explanation
Indices: 35652814--35653563 Score: 753
Period size: 228 Copynumber: 3.3 Consensus size: 226
35652804 TTTTTTGAAA
* * * *
35652814 CGCCGCAAAATAGCTTAACCAAAACGCAG-AGTTTGGTCTTGAGGTAT-CTTAGAATTAGTGGCG
1 CGCCGCAAAATATCTTAACCAAAACGCAGAATTTTGGTCTTGATGTATAC-TAAAATTAGTGGCG
* * * * *
35652877 TTTATGGGAAAACGCCGTTAAAGGACAGTAATAGCGGCGCTTTACGGAAGCGCCGCAAACTATCT
65 CTTA-GGGAAAACACCGTTAAAGAATAGTAATAGCGGCGCTTTATGGAAGCGCCGCAAA-TATCT
* * *
35652942 GAACCGAAACACATCGTTTTGGTCTTGATGTATACTAGAACTAGTGGCGCATGCGGTAAAACGCC
128 GAACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCATGCGGTAAAACGCC
*
35653007 GCTAAAGAATAGTATTAGCGGCGATTCGTGGCTAG
193 GCTAAAGCATAGTATTAGCGGCGATTCGT-GCTAG
** * *
35653042 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGC
1 CGCCGCAAAATATCTTAACCAAAACGCAGAATTTTGGTCTTGATGTATACTAAAATTAGTGGCGC
* * * * * *
35653106 TTACGGTAAACCACCGCTAAAGAATATTAATAGCGGCGCTTTGTGAGAAACGCCGCAAAATATCT
66 TTA-GGGAAAACACCGTTAAAGAATAGTAATAGCGGCGCTTTATG-GAAGCGCCGC-AAATATCT
* ** * * * * *
35653171 TAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCCCTTAG-GG--AAACGC
128 GAACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCAT-GCGGTAAAACGC
* * * * * ***
35653233 CGTTAAATCATAGTATTAGCGGTGCTTGGATAAAAG
192 CGCTAAAGCATAGTATTAGCGGCGATTCG-TGCTAG
* * * * * *
35653269 CGCCACCAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAAAATTAGTGGCGC
1 CGCCGCAAAATATCTTAACCAAAACGCAGAATTTTGGTCTTGATGTATACTAAAATTAGTGGCGC
* * * ** *
35653334 TTAGGG-AAACACCGTTAAAGCATAGTATTAGCGGCGCTTGGATAAAAGCGCCACCAAATATCTG
66 TTAGGGAAAACACCGTTAAAGAATAGTAATAGCGGCGCTT-TATGGAAGCGCC-GCAAATATCTG
* * *
35653398 AACCAAAACGCATCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCG-ATTACGGTAAAACGCC
129 AACCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCA-TGCGGTAAAACGCC
* *
35653462 GCTAAAGCATAGTATTAGCGGCGATTTGTTGCTAC
193 GCTAAAGCATAGTATTAGCGGCGATTCG-TGCTAG
* * * * * *
35653497 CGCCGCGACATACCATAAACAAAACGCA-ACATTTTGGTCTTGATTTATACTAAAATTAGTGGCG
1 CGCCGCAAAATATCTTAACCAAAACGCAGA-ATTTTGGTCTTGATGTATACTAAAATTAGTGGCG
35653561 CTT
65 CTT
35653564 TGTTGAAAGC
Statistics
Matches: 417, Mismatches: 91, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
226 85 0.20
227 76 0.18
228 182 0.44
229 70 0.17
230 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (226 bp):
CGCCGCAAAATATCTTAACCAAAACGCAGAATTTTGGTCTTGATGTATACTAAAATTAGTGGCGC
TTAGGGAAAACACCGTTAAAGAATAGTAATAGCGGCGCTTTATGGAAGCGCCGCAAATATCTGAA
CCAAAACGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCATGCGGTAAAACGCCGCT
AAAGCATAGTATTAGCGGCGATTCGTGCTAG
Found at i:35653556 original size:115 final size:115
Alignment explanation
Indices: 35652700--35653563 Score: 680
Period size: 113 Copynumber: 7.6 Consensus size: 115
35652690 TTACCACAAT
* * **** * * *
35652700 GCGCCGCGAAATCTCTTAACCAAAACGCTGTGTTTTCGTCTTGATGTATCCTAAAAGTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAACATTTTGGTCTTGATGTATACTAAAATTAGTGGCG
* * * * * * ***
35652765 TTTACGCG--AAACGCCGTTAAAGGACAGTAATAGCGGCACTTTTTTGAAA
66 CTTACG-GTAAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGATGAAA
* * * * *
35652814 -CGCCGCAAAATAGCTTAACCAAAACGC-AGAGTTTGGTCTTGAGGTAT-CTTAGAATTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCAACATTTTGGTCTTGATGTATAC-TAAAATTAGTGGC
* * * * * * * * * *
35652876 GTTTATGGGAAAACGCCGTTAAAGGACAGTAATAGCGGCGCTT-TACGGAA
65 GCTTACGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGATGAAA
* * * * * * * *
35652926 GCGCCGCAAACTATCTGAACCGAAACACATCGTTTTGGTCTTGATGTATACTAGAACTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAACATTTTGGTCTTGATGTATACTAAAATTAGTGGCG
* * * * * **
35652991 CATGCGGTAAAACGCCGCTAAAGAATAGTATTAGCGGCGATTCG-TGGCTA
66 CTTACGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGAT-GAAA
* * * *
35653041 GCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTTGATCTTAATGTATA-TAAAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAACATTTTGGTCTTGATGTATACTAAAATTAGTGGCG
* * * * *
35653105 CTTACGGTAAACCACCGCTAAAGAATATTAATAGCGGCGCTTTGTGA-GAAA
66 CTTACGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGC-TTG-GATGAAA
* * * *
35653156 -CGCCGCAAAATATCTTAACCAAAACGCATA-ATTTTGGCCTCGATGTATAGTAGAATTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCA-ACATTTTGGTCTTGATGTATACTAAAATTAGTGGC
* * * * * *
35653219 CCTTA-GG-GAAACGCCGTTAAATCATAGTATTAGCGGTGCTTGGATAAAA
65 GCTTACGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGATGAAA
* * * * *
35653268 GCGCCACCAAATATCTTAACCAAAACGCATA-ATTTTGGCCTCGATGTATAGTAAAATTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCA-ACATTTTGGTCTTGATGTATACTAAAATTAGTGGC
* * * *
35653332 GCTTA-GG-GAAACACCGTTAAAGCATAGTATTAGCGGCGCTTGGATAAAA
65 GCTTACGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGATGAAA
* * * * * ** *
35653381 GCGCCACCAAATATCTGAACCAAAACGCATCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAACATTTTGGTCTTGATGTATACTAAAATTAGTGGCG
* * * * **
35653446 ATTACGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGATTTGTTGCTA
66 CTTACGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGATGAAA
* * * * * * *
35653496 CCGCCGCGACATACCATAAACAAAACGCAACATTTTGGTCTTGATTTATACTAAAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAACATTTTGGTCTTGATGTATACTAAAATTAGTGGCG
35653561 CTT
66 CTT
35653564 TGTTGAAAGC
Statistics
Matches: 613, Mismatches: 119, Indels: 35
0.80 0.16 0.05
Matches are distributed among these distances:
111 4 0.01
112 41 0.07
113 264 0.43
114 151 0.25
115 152 0.25
116 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (115 bp):
GCGCCGCAAAATATCTTAACCAAAACGCAACATTTTGGTCTTGATGTATACTAAAATTAGTGGCG
CTTACGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTGGATGAAA
Found at i:35653738 original size:7 final size:7
Alignment explanation
Indices: 35653728--35653850 Score: 81
Period size: 7 Copynumber: 17.0 Consensus size: 7
35653718 AAAGTTTAAA
35653728 GTTTAGG
1 GTTTAGG
*
35653735 GTTTACG
1 GTTTAGG
* *
35653742 ATGTA-G
1 GTTTAGG
35653748 GTTTAGG
1 GTTTAGG
35653755 G-TTAGG
1 GTTTAGG
35653761 GTATTAGGG
1 GT-TTA-GG
35653770 TGTTTAGG
1 -GTTTAGG
35653778 G-TTAGG
1 GTTTAGG
35653784 GTATTAGGG
1 GT-TTA-GG
*
35653793 TGTTTTGG
1 -GTTTAGG
*
35653801 GTTTAAG
1 GTTTAGG
35653808 GTTTAGG
1 GTTTAGG
* *
35653815 AGTCTGGG
1 -GTTTAGG
*
35653823 GTTTAAG
1 GTTTAGG
*
35653830 GTTTAAG
1 GTTTAGG
35653837 GTTTAGG
1 GTTTAGG
35653844 GTTTAGG
1 GTTTAGG
35653851 CTACTTTAGT
Statistics
Matches: 91, Mismatches: 15, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
6 16 0.18
7 47 0.52
8 15 0.16
9 9 0.10
10 4 0.04
ACGTcount: A:0.18, C:0.02, G:0.40, T:0.41
Consensus pattern (7 bp):
GTTTAGG
Found at i:35653777 original size:23 final size:23
Alignment explanation
Indices: 35653748--35653803 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
35653738 TACGATGTAG
35653748 GTTTAGGGTTAGGGTATTAGGGT
1 GTTTAGGGTTAGGGTATTAGGGT
35653771 GTTTAGGGTTAGGGTATTAGGGT
1 GTTTAGGGTTAGGGTATTAGGGT
*
35653794 GTTTTGGGTT
1 GTTTAGGGTT
35653804 TAAGGTTTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (23 bp):
GTTTAGGGTTAGGGTATTAGGGT
Found at i:35653813 original size:23 final size:23
Alignment explanation
Indices: 35653748--35653848 Score: 86
Period size: 23 Copynumber: 4.5 Consensus size: 23
35653738 TACGATGTAG
*
35653748 GTTTAGGG-TTAGGGTATTAGGGT
1 GTTTAGGGTTTAAGGT-TTAGGGT
*
35653771 GTTTAGGG-TTAGGGTATTAGGGT
1 GTTTAGGGTTTAAGGT-TTAGGGT
* *
35653794 GTTTTGGGTTTAAGGTTTA-GGA
1 GTTTAGGGTTTAAGGTTTAGGGT
* * *
35653816 GTCTGGGGTTTAAGGTTTA-AG-
1 GTTTAGGGTTTAAGGTTTAGGGT
35653837 GTTTAGGGTTTA
1 GTTTAGGGTTTA
35653849 GGCTACTTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.14
22 20 0.29
23 33 0.48
24 6 0.09
ACGTcount: A:0.18, C:0.01, G:0.40, T:0.42
Consensus pattern (23 bp):
GTTTAGGGTTTAAGGTTTAGGGT
Found at i:35654998 original size:22 final size:22
Alignment explanation
Indices: 35654972--35655018 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35654962 ACTATTCCGA
*
35654972 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35654994 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655016 TTA
1 TTA
35655019 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35655106 original size:140 final size:140
Alignment explanation
Indices: 35654854--35664602 Score: 19498
Period size: 140 Copynumber: 69.6 Consensus size: 140
35654844 GATTTTTCGA
35654854 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35654919 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35654984 GGCGTTTCTG
131 GGCGTTTCTG
35654994 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35655059 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35655124 GGCGTTTCTG
131 GGCGTTTCTG
35655134 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35655199 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35655264 GGCGTTTCTG
131 GGCGTTTCTG
35655274 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35655339 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35655404 GGCGTTTCTG
131 GGCGTTTCTG
35655414 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35655479 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35655544 GGCGTTTCTG
131 GGCGTTTCTG
35655554 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35655619 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35655684 GGCGTTTCTG
131 GGCGTTTCTG
35655694 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35655759 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35655824 GGCGTTTCTG
131 GGCGTTTCTG
35655834 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35655899 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35655964 GGCGTTTCTG
131 GGCGTTTCTG
35655974 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35656039 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35656104 GGCGTTTCTG
131 GGCGTTTCTG
35656114 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35656179 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35656244 GGCGTTTCTG
131 GGCGTTTCTG
35656254 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35656319 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35656384 GGCGTTTCTG
131 GGCGTTTCTG
35656394 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35656459 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35656524 GGCGTTTCTG
131 GGCGTTTCTG
35656534 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35656599 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35656664 GGCGTTTCTG
131 GGCGTTTCTG
35656674 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35656739 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35656804 GGCGTTTCTG
131 GGCGTTTCTG
35656814 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35656879 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35656944 GGCGTTTCTG
131 GGCGTTTCTG
35656954 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35657019 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35657084 GGCGTTTCTG
131 GGCGTTTCTG
35657094 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35657159 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35657224 GGCGTTTCTG
131 GGCGTTTCTG
35657234 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35657299 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35657364 GGCGTTTCTG
131 GGCGTTTCTG
35657374 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35657439 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35657504 GGCGTTTCTG
131 GGCGTTTCTG
35657514 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35657579 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35657644 GGCGTTTCTG
131 GGCGTTTCTG
35657654 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35657719 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35657784 GGCGTTTCTG
131 GGCGTTTCTG
35657794 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35657859 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35657924 GGCGTTTCTG
131 GGCGTTTCTG
35657934 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35657999 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35658064 GGCGTTTCTG
131 GGCGTTTCTG
35658074 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35658139 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35658204 GGCGTTTCTG
131 GGCGTTTCTG
35658214 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35658279 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35658344 GGCGTTTCTG
131 GGCGTTTCTG
35658354 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35658419 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35658484 GGCGTTTCTG
131 GGCGTTTCTG
35658494 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35658559 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35658624 GGCGTTTCTG
131 GGCGTTTCTG
35658634 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35658699 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35658764 GGCGTTTCTG
131 GGCGTTTCTG
35658774 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35658839 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35658904 GGCGTTTCTG
131 GGCGTTTCTG
35658914 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35658979 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35659044 GGCGTTTCTG
131 GGCGTTTCTG
35659054 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35659119 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35659184 GGCGTTTCTG
131 GGCGTTTCTG
35659194 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35659259 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35659324 GGCGTTTCTG
131 GGCGTTTCTG
35659334 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35659399 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35659464 GGCGTTTCTG
131 GGCGTTTCTG
35659474 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35659539 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35659604 GGCGTTTCTG
131 GGCGTTTCTG
35659614 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35659679 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35659744 GGCGTTTCTG
131 GGCGTTTCTG
35659754 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35659819 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35659884 GGCGTTTCTG
131 GGCGTTTCTG
35659894 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35659959 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35660024 GGCGTTTCTG
131 GGCGTTTCTG
35660034 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35660099 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35660164 GGCGTTTCTG
131 GGCGTTTCTG
35660174 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35660239 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35660304 GGCGTTTCTG
131 GGCGTTTCTG
35660314 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35660379 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35660444 GGCGTTTCTG
131 GGCGTTTCTG
35660454 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35660519 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35660584 GGCGTTTCTG
131 GGCGTTTCTG
35660594 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35660659 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35660724 GGCGTTTCTG
131 GGCGTTTCTG
35660734 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35660799 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35660864 GGCGTTTCTG
131 GGCGTTTCTG
35660874 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35660939 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35661004 GGCGTTTCTG
131 GGCGTTTCTG
35661014 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35661079 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35661144 GGCGTTTCTG
131 GGCGTTTCTG
35661154 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35661219 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35661284 GGCGTTTCTG
131 GGCGTTTCTG
35661294 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35661359 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35661424 GGCGTTTCTG
131 GGCGTTTCTG
35661434 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35661499 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35661564 GGCGTTTCTG
131 GGCGTTTCTG
35661574 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35661639 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35661704 GGCGTTTCTG
131 GGCGTTTCTG
35661714 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35661779 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35661844 GGCGTTTCTG
131 GGCGTTTCTG
35661854 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35661919 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35661984 GGCGTTTCTG
131 GGCGTTTCTG
35661994 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35662059 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35662124 GGCGTTTCTG
131 GGCGTTTCTG
35662134 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35662199 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35662264 GGCGTTTCTG
131 GGCGTTTCTG
35662274 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35662339 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35662404 GGCGTTTCTG
131 GGCGTTTCTG
35662414 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35662479 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35662544 GGCGTTTCTG
131 GGCGTTTCTG
35662554 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35662619 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35662684 GGCGTTTCTG
131 GGCGTTTCTG
35662694 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35662759 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35662824 GGCGTTTCTG
131 GGCGTTTCTG
35662834 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35662899 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35662964 GGCGTTTCTG
131 GGCGTTTCTG
35662974 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35663039 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35663104 GGCGTTTCTG
131 GGCGTTTCTG
35663114 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35663179 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35663244 GGCGTTTCTG
131 GGCGTTTCTG
35663254 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35663319 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35663384 GGCGTTTCTG
131 GGCGTTTCTG
35663394 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35663459 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35663524 GGCGTTTCTG
131 GGCGTTTCTG
35663534 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35663599 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35663664 GGCGTTTCTG
131 GGCGTTTCTG
35663674 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35663739 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35663804 GGCGTTTCTG
131 GGCGTTTCTG
35663814 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35663879 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35663944 GGCGTTTCTG
131 GGCGTTTCTG
35663954 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35664019 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35664084 GGCGTTTCTG
131 GGCGTTTCTG
35664094 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35664159 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35664224 GGCGTTTCTG
131 GGCGTTTCTG
35664234 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35664299 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35664364 GGCGTTTCTG
131 GGCGTTTCTG
35664374 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35664439 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
66 TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
35664504 GGCGTTTCTG
131 GGCGTTTCTG
35664514 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
1 TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
35664579 TATTTGGGGTTTTAGGGTTTCGAT
66 TATTTGGGGTTTTAGGGTTTCGAT
35664603 AAAAAAAATC
Statistics
Matches: 9609, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
140 9609 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (140 bp):
TTAAATAGGTAAGGCGTTTCTGTTATTTTTGGATTAAATTTTTAGGGTTTTAGGTCAGTCCTAGT
TATTTGGGGTTTTAGGGTTTCGATTAAACAACTTCAACAATGTACTATTCCGATTAAATATGTAA
GGCGTTTCTG
Found at i:35655138 original size:22 final size:22
Alignment explanation
Indices: 35655112--35655158 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35655102 ACTATTCCGA
*
35655112 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655134 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655156 TTA
1 TTA
35655159 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35655278 original size:22 final size:22
Alignment explanation
Indices: 35655252--35655298 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35655242 ACTATTCCGA
*
35655252 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655274 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655296 TTA
1 TTA
35655299 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35655418 original size:22 final size:22
Alignment explanation
Indices: 35655392--35655438 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35655382 ACTATTCCGA
*
35655392 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655414 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655436 TTA
1 TTA
35655439 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35655558 original size:22 final size:22
Alignment explanation
Indices: 35655532--35655578 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35655522 ACTATTCCGA
*
35655532 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655554 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655576 TTA
1 TTA
35655579 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35655698 original size:22 final size:22
Alignment explanation
Indices: 35655672--35655718 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35655662 ACTATTCCGA
*
35655672 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655694 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655716 TTA
1 TTA
35655719 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35655838 original size:22 final size:22
Alignment explanation
Indices: 35655812--35655858 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35655802 ACTATTCCGA
*
35655812 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655834 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655856 TTA
1 TTA
35655859 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35655978 original size:22 final size:22
Alignment explanation
Indices: 35655952--35655998 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35655942 ACTATTCCGA
*
35655952 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655974 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35655996 TTA
1 TTA
35655999 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35656118 original size:22 final size:22
Alignment explanation
Indices: 35656092--35656138 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35656082 ACTATTCCGA
*
35656092 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656114 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656136 TTA
1 TTA
35656139 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35656258 original size:22 final size:22
Alignment explanation
Indices: 35656232--35656278 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35656222 ACTATTCCGA
*
35656232 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656254 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656276 TTA
1 TTA
35656279 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35656398 original size:22 final size:22
Alignment explanation
Indices: 35656372--35656418 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35656362 ACTATTCCGA
*
35656372 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656394 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656416 TTA
1 TTA
35656419 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35656538 original size:22 final size:22
Alignment explanation
Indices: 35656512--35656558 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35656502 ACTATTCCGA
*
35656512 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656534 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656556 TTA
1 TTA
35656559 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35656678 original size:22 final size:22
Alignment explanation
Indices: 35656652--35656698 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35656642 ACTATTCCGA
*
35656652 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656674 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656696 TTA
1 TTA
35656699 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35656818 original size:22 final size:22
Alignment explanation
Indices: 35656792--35656838 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35656782 ACTATTCCGA
*
35656792 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656814 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656836 TTA
1 TTA
35656839 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35656958 original size:22 final size:22
Alignment explanation
Indices: 35656932--35656978 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35656922 ACTATTCCGA
*
35656932 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656954 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35656976 TTA
1 TTA
35656979 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35657098 original size:22 final size:22
Alignment explanation
Indices: 35657072--35657118 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35657062 ACTATTCCGA
*
35657072 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657094 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657116 TTA
1 TTA
35657119 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35657238 original size:22 final size:22
Alignment explanation
Indices: 35657212--35657258 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35657202 ACTATTCCGA
*
35657212 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657234 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657256 TTA
1 TTA
35657259 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35657378 original size:22 final size:22
Alignment explanation
Indices: 35657352--35657398 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35657342 ACTATTCCGA
*
35657352 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657374 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657396 TTA
1 TTA
35657399 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35657518 original size:22 final size:22
Alignment explanation
Indices: 35657492--35657538 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35657482 ACTATTCCGA
*
35657492 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657514 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657536 TTA
1 TTA
35657539 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35657658 original size:22 final size:22
Alignment explanation
Indices: 35657632--35657678 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35657622 ACTATTCCGA
*
35657632 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657654 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657676 TTA
1 TTA
35657679 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35657798 original size:22 final size:22
Alignment explanation
Indices: 35657772--35657818 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35657762 ACTATTCCGA
*
35657772 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657794 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657816 TTA
1 TTA
35657819 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35657938 original size:22 final size:22
Alignment explanation
Indices: 35657912--35657958 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35657902 ACTATTCCGA
*
35657912 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657934 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35657956 TTA
1 TTA
35657959 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35658078 original size:22 final size:22
Alignment explanation
Indices: 35658052--35658098 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35658042 ACTATTCCGA
*
35658052 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658074 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658096 TTA
1 TTA
35658099 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35658218 original size:22 final size:22
Alignment explanation
Indices: 35658192--35658238 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35658182 ACTATTCCGA
*
35658192 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658214 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658236 TTA
1 TTA
35658239 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35658358 original size:22 final size:22
Alignment explanation
Indices: 35658332--35658378 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35658322 ACTATTCCGA
*
35658332 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658354 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658376 TTA
1 TTA
35658379 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35658498 original size:22 final size:22
Alignment explanation
Indices: 35658472--35658518 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35658462 ACTATTCCGA
*
35658472 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658494 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658516 TTA
1 TTA
35658519 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35658638 original size:22 final size:22
Alignment explanation
Indices: 35658612--35658658 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35658602 ACTATTCCGA
*
35658612 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658634 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658656 TTA
1 TTA
35658659 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35658778 original size:22 final size:22
Alignment explanation
Indices: 35658752--35658798 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35658742 ACTATTCCGA
*
35658752 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658774 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658796 TTA
1 TTA
35658799 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35658918 original size:22 final size:22
Alignment explanation
Indices: 35658892--35658938 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35658882 ACTATTCCGA
*
35658892 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658914 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35658936 TTA
1 TTA
35658939 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35659058 original size:22 final size:22
Alignment explanation
Indices: 35659032--35659078 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35659022 ACTATTCCGA
*
35659032 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659054 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659076 TTA
1 TTA
35659079 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35659198 original size:22 final size:22
Alignment explanation
Indices: 35659172--35659218 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35659162 ACTATTCCGA
*
35659172 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659194 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659216 TTA
1 TTA
35659219 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35659338 original size:22 final size:22
Alignment explanation
Indices: 35659312--35659358 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35659302 ACTATTCCGA
*
35659312 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659334 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659356 TTA
1 TTA
35659359 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35659478 original size:22 final size:22
Alignment explanation
Indices: 35659452--35659498 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35659442 ACTATTCCGA
*
35659452 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659474 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659496 TTA
1 TTA
35659499 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35659618 original size:22 final size:22
Alignment explanation
Indices: 35659592--35659638 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35659582 ACTATTCCGA
*
35659592 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659614 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659636 TTA
1 TTA
35659639 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35659758 original size:22 final size:22
Alignment explanation
Indices: 35659732--35659778 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35659722 ACTATTCCGA
*
35659732 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659754 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659776 TTA
1 TTA
35659779 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35659898 original size:22 final size:22
Alignment explanation
Indices: 35659872--35659918 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35659862 ACTATTCCGA
*
35659872 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659894 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35659916 TTA
1 TTA
35659919 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35660038 original size:22 final size:22
Alignment explanation
Indices: 35660012--35660058 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35660002 ACTATTCCGA
*
35660012 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660034 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660056 TTA
1 TTA
35660059 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35660178 original size:22 final size:22
Alignment explanation
Indices: 35660152--35660198 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35660142 ACTATTCCGA
*
35660152 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660174 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660196 TTA
1 TTA
35660199 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35660318 original size:22 final size:22
Alignment explanation
Indices: 35660292--35660338 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35660282 ACTATTCCGA
*
35660292 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660314 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660336 TTA
1 TTA
35660339 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35660458 original size:22 final size:22
Alignment explanation
Indices: 35660432--35660478 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35660422 ACTATTCCGA
*
35660432 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660454 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660476 TTA
1 TTA
35660479 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35660598 original size:22 final size:22
Alignment explanation
Indices: 35660572--35660618 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35660562 ACTATTCCGA
*
35660572 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660594 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660616 TTA
1 TTA
35660619 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35660738 original size:22 final size:22
Alignment explanation
Indices: 35660712--35660758 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35660702 ACTATTCCGA
*
35660712 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660734 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660756 TTA
1 TTA
35660759 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35660878 original size:22 final size:22
Alignment explanation
Indices: 35660852--35660898 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35660842 ACTATTCCGA
*
35660852 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660874 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35660896 TTA
1 TTA
35660899 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35661018 original size:22 final size:22
Alignment explanation
Indices: 35660992--35661038 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35660982 ACTATTCCGA
*
35660992 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661014 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661036 TTA
1 TTA
35661039 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35661158 original size:22 final size:22
Alignment explanation
Indices: 35661132--35661178 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35661122 ACTATTCCGA
*
35661132 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661154 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661176 TTA
1 TTA
35661179 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35661298 original size:22 final size:22
Alignment explanation
Indices: 35661272--35661318 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35661262 ACTATTCCGA
*
35661272 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661294 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661316 TTA
1 TTA
35661319 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35661438 original size:22 final size:22
Alignment explanation
Indices: 35661412--35661458 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35661402 ACTATTCCGA
*
35661412 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661434 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661456 TTA
1 TTA
35661459 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35661578 original size:22 final size:22
Alignment explanation
Indices: 35661552--35661598 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35661542 ACTATTCCGA
*
35661552 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661574 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661596 TTA
1 TTA
35661599 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35661718 original size:22 final size:22
Alignment explanation
Indices: 35661692--35661738 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35661682 ACTATTCCGA
*
35661692 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661714 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661736 TTA
1 TTA
35661739 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35661858 original size:22 final size:22
Alignment explanation
Indices: 35661832--35661878 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35661822 ACTATTCCGA
*
35661832 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661854 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661876 TTA
1 TTA
35661879 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35661998 original size:22 final size:22
Alignment explanation
Indices: 35661972--35662018 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35661962 ACTATTCCGA
*
35661972 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35661994 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662016 TTA
1 TTA
35662019 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35662138 original size:22 final size:22
Alignment explanation
Indices: 35662112--35662158 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35662102 ACTATTCCGA
*
35662112 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662134 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662156 TTA
1 TTA
35662159 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35662278 original size:22 final size:22
Alignment explanation
Indices: 35662252--35662298 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35662242 ACTATTCCGA
*
35662252 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662274 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662296 TTA
1 TTA
35662299 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35662418 original size:22 final size:22
Alignment explanation
Indices: 35662392--35662438 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35662382 ACTATTCCGA
*
35662392 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662414 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662436 TTA
1 TTA
35662439 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35662558 original size:22 final size:22
Alignment explanation
Indices: 35662532--35662578 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35662522 ACTATTCCGA
*
35662532 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662554 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662576 TTA
1 TTA
35662579 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35662698 original size:22 final size:22
Alignment explanation
Indices: 35662672--35662718 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35662662 ACTATTCCGA
*
35662672 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662694 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662716 TTA
1 TTA
35662719 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35662838 original size:22 final size:22
Alignment explanation
Indices: 35662812--35662858 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35662802 ACTATTCCGA
*
35662812 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662834 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662856 TTA
1 TTA
35662859 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35662978 original size:22 final size:22
Alignment explanation
Indices: 35662952--35662998 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35662942 ACTATTCCGA
*
35662952 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662974 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35662996 TTA
1 TTA
35662999 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35663118 original size:22 final size:22
Alignment explanation
Indices: 35663092--35663138 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35663082 ACTATTCCGA
*
35663092 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663114 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663136 TTA
1 TTA
35663139 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35663258 original size:22 final size:22
Alignment explanation
Indices: 35663232--35663278 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35663222 ACTATTCCGA
*
35663232 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663254 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663276 TTA
1 TTA
35663279 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35663398 original size:22 final size:22
Alignment explanation
Indices: 35663372--35663418 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35663362 ACTATTCCGA
*
35663372 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663394 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663416 TTA
1 TTA
35663419 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35663538 original size:22 final size:22
Alignment explanation
Indices: 35663512--35663558 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35663502 ACTATTCCGA
*
35663512 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663534 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663556 TTA
1 TTA
35663559 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35663678 original size:22 final size:22
Alignment explanation
Indices: 35663652--35663698 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35663642 ACTATTCCGA
*
35663652 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663674 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663696 TTA
1 TTA
35663699 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35663818 original size:22 final size:22
Alignment explanation
Indices: 35663792--35663838 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35663782 ACTATTCCGA
*
35663792 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663814 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663836 TTA
1 TTA
35663839 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35663958 original size:22 final size:22
Alignment explanation
Indices: 35663932--35663978 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35663922 ACTATTCCGA
*
35663932 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663954 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35663976 TTA
1 TTA
35663979 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35664098 original size:22 final size:22
Alignment explanation
Indices: 35664072--35664118 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35664062 ACTATTCCGA
*
35664072 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35664094 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35664116 TTA
1 TTA
35664119 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35664238 original size:22 final size:22
Alignment explanation
Indices: 35664212--35664258 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35664202 ACTATTCCGA
*
35664212 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35664234 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35664256 TTA
1 TTA
35664259 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35664378 original size:22 final size:22
Alignment explanation
Indices: 35664352--35664398 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35664342 ACTATTCCGA
*
35664352 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35664374 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35664396 TTA
1 TTA
35664399 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35664518 original size:22 final size:22
Alignment explanation
Indices: 35664492--35664538 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
35664482 ACTATTCCGA
*
35664492 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35664514 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
35664536 TTA
1 TTA
35664539 TTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:35664714 original size:43 final size:42
Alignment explanation
Indices: 35664667--35664846 Score: 170
Period size: 43 Copynumber: 4.2 Consensus size: 42
35664657 ATCAAACAGT
35664667 GGCG-TTTGTGAAATAAGCGCCGCTAAAGAACACTACTTTTAGC
1 GGCGTTTTGTGAAA-AAGCGCCGCTAAAGAACA-TACTTTTAGC
* * *
35664710 GGCGTTTT-TGAACAAGCGCCGCTATAGAACATTACTTTTAGA
1 GGCGTTTTGTGAAAAAGCGCCGCTAAAGAACA-TACTTTTAGC
* ***
35664752 GGCGTTTTCTTCCAAAGCGCCGCTAAAAGAACATGA-TATTTAGC
1 GGCGTTTTGTGAAAAAGCGCCGCT-AAAGAACAT-ACT-TTTAGC
* * *
35664796 GGCGTTTTGTTAAAAAGCACCGCTAAAGAACATGA-TCTTTAGT
1 GGCGTTTTGTGAAAAAGCGCCGCTAAAGAACAT-ACT-TTTAGC
35664839 GGCGTTTT
1 GGCGTTTT
35664847 TTTCTAAGCG
Statistics
Matches: 116, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
42 34 0.29
43 46 0.40
44 36 0.31
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (42 bp):
GGCGTTTTGTGAAAAAGCGCCGCTAAAGAACATACTTTTAGC
Found at i:35664874 original size:42 final size:42
Alignment explanation
Indices: 35664680--35665078 Score: 437
Period size: 42 Copynumber: 9.4 Consensus size: 42
35664670 GTTTGTGAAA
* **
35664680 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGAAC
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGTGGCGTTTTT-TTC
* * * *
35664723 -AAGCGCCGCTATAGAACATTA-CTTTTAGAGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGTGGCGTTTT-TTTC
* * * **
35664765 AAAGCGCCGCTAAAAGAACATGATATTTAGCGGCGTTTTGTTAA
1 TAAGCGCCGCT-AAAGAACATGATCTTTAGTGGCGTTTT-TTTC
* *
35664809 AAAGCACCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTC
* *
35664851 TAAGCGTCGCTAAAGAACATGATCTTTAGTGGCGTTTATTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTC
* * *
35664893 TAAGCGCCGCTAAAGAACATGATTTTTACTGGCGTTTATTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTC
* *
35664935 TAAGCGCTGCTAAAGAACATGATCTTTAGTGGCGTTTATTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTT-TTTTC
* * * *
35664978 TTAGCGCCGCTAAAGAACAAGTTCTTTAGCGGCGTTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCG-TTTTTTTC
*
35665021 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTCTA
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTT-TC
*
35665064 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
35665079 TTTGCGACGT
Statistics
Matches: 308, Mismatches: 40, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.00
42 153 0.50
43 117 0.38
44 37 0.12
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTC
Found at i:35664928 original size:84 final size:84
Alignment explanation
Indices: 35664680--35665078 Score: 425
Period size: 86 Copynumber: 4.7 Consensus size: 84
35664670 GTTTGTGAAA
* * *
35664680 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGAAC-AAGCGCCGCTATAGAACAT
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGTGGCGTTTTT-TACTAAGCGCCGCTAAAGAACAT
* * ** *
35664742 TACTTTTAGAGGCGTTTTCTTCC
63 GATTTTTACTGGCGTTTT-TTTC
* * * ** *
35664765 AAAGCGCCGCTAAAAGAACATGATATTTAGCGGCGTTTTGTTAAAAAGCACCGCTAAAGAACATG
1 TAAGCGCCGCT-AAAGAACATGATCTTTAGTGGCGTTTT-TTACTAAGCGCCGCTAAAGAACATG
* *
35664830 ATCTTTAGTGGCGTTTTTTTC
64 ATTTTTACTGGCGTTTTTTTC
*
35664851 TAAGCGTCGCTAAAGAACATGATCTTTAGTGGCGTTTATTT-CTAAGCGCCGCTAAAGAACATGA
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTT-TTTACTAAGCGCCGCTAAAGAACATGA
*
35664915 TTTTTACTGGCGTTTATTTC
65 TTTTTACTGGCGTTTTTTTC
* * * *
35664935 TAAGCGCTGCTAAAGAACATGATCTTTAGTGGCGTTTATTTCCTTAGCGCCGCTAAAGAACAAG-
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTT-TTTACTAAGCGCCGCTAAAGAACATGA
35664999 TTCTTTAGC-GGCGTTTTTTTTC
65 TT-TTTA-CTGGCG-TTTTTTTC
*
35665021 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTT-CTATAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTAC--TAAGCGCCGCTAAAG
35665079 TTTGCGACGT
Statistics
Matches: 273, Mismatches: 29, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
84 79 0.29
85 68 0.25
86 94 0.34
87 32 0.12
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (84 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTACTAAGCGCCGCTAAAGAACATGAT
TTTTACTGGCGTTTTTTTC
Found at i:35666778 original size:39 final size:39
Alignment explanation
Indices: 35666708--35666785 Score: 122
Period size: 41 Copynumber: 2.0 Consensus size: 39
35666698 AATTTGATAA
35666708 TTAATATGACATTATTTTTAATTGTTAAATTTTTAAAATTT
1 TTAATATGACATTA-TTTTAATTGTTAAA-TTTTAAAATTT
*
35666749 TTAATATGACATTA-TTTAATTGTTCAATTTTAAAATT
1 TTAATATGACATTATTTTAATTGTTAAATTTTAAAATT
35666786 GAATATAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
38 10 0.28
39 12 0.33
41 14 0.39
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (39 bp):
TTAATATGACATTATTTTAATTGTTAAATTTTAAAATTT
Found at i:35667158 original size:8 final size:7
Alignment explanation
Indices: 35667140--35667386 Score: 90
Period size: 7 Copynumber: 34.4 Consensus size: 7
35667130 TAGACCAAAA
*
35667140 AAACTCT
1 AAACCCT
35667147 AAACCCCT
1 AAA-CCCT
*
35667155 AAACCTT
1 AAACCCT
*
35667162 AAATCCT
1 AAACCCT
*
35667169 AAAATCCT
1 -AAACCCT
*
35667177 AAACCAT
1 AAACCCT
35667184 AAACCCT
1 AAACCCT
*
35667191 AAACACTCAA
1 AAAC-C-C-T
35667201 AAACCCCT
1 AAA-CCCT
* *
35667209 AAATCCA
1 AAACCCT
35667216 AAACCCCT
1 AAA-CCCT
***
35667224 AAACTAG
1 AAACCCT
**
35667231 AAACTTT
1 AAACCCT
*
35667238 AAACACT
1 AAACCCT
*
35667245 AATCCCT
1 AAACCCT
35667252 AAACCCAT
1 AAACCC-T
*
35667260 AACCCCT
1 AAACCCT
*
35667267 AAACCTT
1 AAACCCT
**
35667274 AAACATT
1 AAACCCT
* *
35667281 AATCTCT
1 AAACCCT
35667288 AAA-CCT
1 AAACCCT
35667294 AAAACCCT
1 -AAACCCT
*
35667302 AATCCCT
1 AAACCCT
35667309 AAACCAC-
1 AAACC-CT
35667316 AAA-CCT
1 AAACCCT
* **
35667322 ACACTAT
1 AAACCCT
35667329 AAACCCT
1 AAACCCT
35667336 AAACCCT
1 AAACCCT
*
35667343 AAACCTT
1 AAACCCT
35667350 AAATCCC-
1 AAA-CCCT
*
35667357 AAACCAT
1 AAACCCT
*
35667364 AAA-CAT
1 AAACCCT
**
35667370 GCACCCT
1 AAACCCT
35667377 AAACCCT
1 AAACCCT
35667384 AAA
1 AAA
35667387 TATATATATA
Statistics
Matches: 176, Mismatches: 48, Indels: 32
0.69 0.19 0.12
Matches are distributed among these distances:
5 1 0.01
6 11 0.06
7 123 0.70
8 34 0.19
9 2 0.01
10 4 0.02
11 1 0.01
ACGTcount: A:0.46, C:0.34, G:0.01, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:35667177 original size:22 final size:22
Alignment explanation
Indices: 35667152--35667193 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
35667142 ACTCTAAACC
* *
35667152 CCTAAACCTTAAATCCTAAAAT
1 CCTAAACCATAAACCCTAAAAT
35667174 CCTAAACCATAAACCCTAAA
1 CCTAAACCATAAACCCTAAA
35667194 CACTCAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (22 bp):
CCTAAACCATAAACCCTAAAAT
Found at i:35667344 original size:41 final size:41
Alignment explanation
Indices: 35667287--35667386 Score: 107
Period size: 41 Copynumber: 2.4 Consensus size: 41
35667277 CATTAATCTC
* *
35667287 TAAA-CCTAAAACCCTAATCCCTAAA-CCACAAACC-TACACTA
1 TAAACCCT-AAACCCTAAACCCTAAATCC-CAAACCATAAAC-A
*
35667328 TAAACCCTAAACCCTAAACCTTAAATCCCAAACCATAAACA
1 TAAACCCTAAACCCTAAACCCTAAATCCCAAACCATAAACA
**
35667369 TGCACCCTAAACCCTAAA
1 TAAACCCTAAACCCTAAA
35667387 TATATATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
41 42 0.82
42 9 0.18
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.17
Consensus pattern (41 bp):
TAAACCCTAAACCCTAAACCCTAAATCCCAAACCATAAACA
Found at i:35667347 original size:48 final size:48
Alignment explanation
Indices: 35667286--35667386 Score: 116
Period size: 48 Copynumber: 2.1 Consensus size: 48
35667276 ACATTAATCT
* *
35667286 CTAAACCTAAAACCCT-AATCCCTAAACCACAAACCTACACTATAAACC
1 CTAAACCTAAAACCCTAAATCCC-AAACCACAAACATACACCATAAACC
* * * *
35667334 CTAAACCCT-AAACCTTAAATCCCAAACCATAAACATGCACCCTAAACC
1 CTAAA-CCTAAAACCCTAAATCCCAAACCACAAACATACACCATAAACC
35667382 CTAAA
1 CTAAA
35667387 TATATATATA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 36 0.80
49 9 0.20
ACGTcount: A:0.46, C:0.37, G:0.01, T:0.17
Consensus pattern (48 bp):
CTAAACCTAAAACCCTAAATCCCAAACCACAAACATACACCATAAACC
Found at i:35667753 original size:40 final size:40
Alignment explanation
Indices: 35667709--35667795 Score: 102
Period size: 40 Copynumber: 2.2 Consensus size: 40
35667699 AAAAGTGCTG
** *
35667709 CTAATACTTGATCTATAGCGGCGTTTCCTAGAAAGCGCCA
1 CTAATACTCAATCTATAGCGGCGTTTCCTAAAAAGCGCCA
* * **
35667749 CTAATTCTCAATCTATTGCGGCGTTTTTTAAAAAGCGCCA
1 CTAATACTCAATCTATAGCGGCGTTTCCTAAAAAGCGCCA
*
35667789 GTAATAC
1 CTAATAC
35667796 CACTAAAGCT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (40 bp):
CTAATACTCAATCTATAGCGGCGTTTCCTAAAAAGCGCCA
Found at i:35667937 original size:40 final size:40
Alignment explanation
Indices: 35667888--35667979 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 40
35667878 TTTACAGGAG
* * * *
35667888 GCGCTGCTAATGCTCGATCTTTAGTGGCGTTT-TTAAAAAA
1 GCGCCGCTAATGCTAGATCTTTAGCGGCATTTGTT-AAAAA
* * *
35667928 GCGCCGCTAATTCTAGATTTTTTGCGGCATTTGTTAAAAA
1 GCGCCGCTAATGCTAGATCTTTAGCGGCATTTGTTAAAAA
*
35667968 GTGCCGCTAATG
1 GCGCCGCTAATG
35667980 GCACTAAAGC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (40 bp):
GCGCCGCTAATGCTAGATCTTTAGCGGCATTTGTTAAAAA
Found at i:35668454 original size:15 final size:15
Alignment explanation
Indices: 35668434--35668462 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
35668424 TTGCTTAAGA
35668434 ATATGTTTATGATTT
1 ATATGTTTATGATTT
35668449 ATATGTTTATGATT
1 ATATGTTTATGATT
35668463 AATGACATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (15 bp):
ATATGTTTATGATTT
Found at i:35687623 original size:20 final size:20
Alignment explanation
Indices: 35687598--35687670 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
35687588 TGCATAACAA
35687598 AGGCACCAAAGTGCAGACAG
1 AGGCACCAAAGTGCAGACAG
*
35687618 AGGCA-CAAATGTGCA-ATCGG
1 AGGCACCAAA-GTGCAGA-CAG
*
35687638 AGGCACCGAAGTGCAGACAG
1 AGGCACCAAAGTGCAGACAG
*
35687658 AGGCACCGAAGTG
1 AGGCACCAAAGTG
35687671 TAATCCCATA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
19 5 0.11
20 37 0.80
21 4 0.09
ACGTcount: A:0.36, C:0.23, G:0.33, T:0.08
Consensus pattern (20 bp):
AGGCACCAAAGTGCAGACAG
Found at i:35694162 original size:60 final size:60
Alignment explanation
Indices: 35694087--35694205 Score: 229
Period size: 60 Copynumber: 2.0 Consensus size: 60
35694077 ATGGTGAACC
*
35694087 TGTGCTGAGGGTAGGTGATAAAAAGGTTACTCTTCAAGCACGTGATGTTGTGAGAGTTTT
1 TGTGCTGAGGATAGGTGATAAAAAGGTTACTCTTCAAGCACGTGATGTTGTGAGAGTTTT
35694147 TGTGCTGAGGATAGGTGATAAAAAGGTTACTCTTCAAGCACGTGATGTTGTGAGAGTTT
1 TGTGCTGAGGATAGGTGATAAAAAGGTTACTCTTCAAGCACGTGATGTTGTGAGAGTTT
35694206 CTAGGGGGTG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (60 bp):
TGTGCTGAGGATAGGTGATAAAAAGGTTACTCTTCAAGCACGTGATGTTGTGAGAGTTTT
Found at i:35699159 original size:36 final size:37
Alignment explanation
Indices: 35699103--35699176 Score: 141
Period size: 36 Copynumber: 2.0 Consensus size: 37
35699093 ACAGGGTCAT
35699103 TGAAATATTATATTGGTTCATGTAAGAAAAATCCTAG
1 TGAAATATTATATTGGTTCATGTAAGAAAAATCCTAG
35699140 TGAAATATTA-ATTGGTTCATGTAAGAAAAATCCTAG
1 TGAAATATTATATTGGTTCATGTAAGAAAAATCCTAG
35699176 T
1 T
35699177 AATGTTGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 27 0.73
37 10 0.27
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (37 bp):
TGAAATATTATATTGGTTCATGTAAGAAAAATCCTAG
Found at i:35702700 original size:20 final size:20
Alignment explanation
Indices: 35702677--35702813 Score: 85
Period size: 20 Copynumber: 7.3 Consensus size: 20
35702667 TATGTGTTAA
35702677 TTTTAAGACTTATGTAATGT
1 TTTTAAGACTTATGTAATGT
* * *
35702697 TTTT-A-A-TTATATACTGA
1 TTTTAAGACTTATGTAATGT
**
35702714 TTCAAAGACTTATGTAATGT
1 TTTTAAGACTTATGTAATGT
* *
35702734 TTTT-A-A-TTATGTAGTGA
1 TTTTAAGACTTATGTAATGT
** *
35702751 TTCAAAGACATATGTAATGT
1 TTTTAAGACTTATGTAATGT
* *
35702771 TTTT-A-A-TTATGTAGTGA
1 TTTTAAGACTTATGTAATGT
* *
35702788 TTTAAAGACTTATGTAATTT
1 TTTTAAGACTTATGTAATGT
35702808 TTTTAA
1 TTTTAA
35702814 TTATGTAGTG
Statistics
Matches: 81, Mismatches: 27, Indels: 18
0.64 0.21 0.14
Matches are distributed among these distances:
17 32 0.40
18 6 0.07
19 6 0.07
20 37 0.46
ACGTcount: A:0.34, C:0.05, G:0.13, T:0.48
Consensus pattern (20 bp):
TTTTAAGACTTATGTAATGT
Found at i:35702706 original size:17 final size:17
Alignment explanation
Indices: 35702686--35702820 Score: 63
Period size: 17 Copynumber: 7.4 Consensus size: 17
35702676 ATTTTAAGAC
35702686 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* * ***
35702703 TTATATACTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
35702722 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
* ***
35702740 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
*
35702759 CATATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
* **
35702777 TTATGTAGTGATTTAAAGA
1 TTATGTAATG-TTTTTA-A
*
35702796 CTTATGTAATTTTTTTAA
1 -TTATGTAATGTTTTTAA
35702814 TTATGTA
1 TTATGTA
35702821 GTGATTCAAT
Statistics
Matches: 82, Mismatches: 27, Indels: 18
0.65 0.21 0.14
Matches are distributed among these distances:
17 32 0.39
18 13 0.16
19 13 0.16
20 24 0.29
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.49
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:35702722 original size:37 final size:37
Alignment explanation
Indices: 35702681--35702829 Score: 253
Period size: 37 Copynumber: 4.0 Consensus size: 37
35702671 TGTTAATTTT
* *
35702681 AAGACTTATGTAATGTTTTTAATTATATACTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
35702718 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
* *
35702755 AAGACATATGTAATGTTTTTAATTATGTAGTGATTTA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
35702792 AAGACTTATGTAATTTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
35702829 A
1 A
35702830 TTCGATTAAA
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.46
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Done.