Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 114 of 141
Found at i:36555274 original size:20 final size:20
Alignment explanation
Indices: 36555236--36555274 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
36555226 AGTATTATTT
*
36555236 TTAGGATATTTTTTATTTAC
1 TTAGGATATTTTGTATTTAC
36555256 TTAGGAATATTTTGT-TTTA
1 TTAGG-ATATTTTGTATTTA
36555275 TGCATAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.59
Consensus pattern (20 bp):
TTAGGATATTTTGTATTTAC
Found at i:36564754 original size:13 final size:13
Alignment explanation
Indices: 36564736--36564762 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36564726 AAAATACAGT
36564736 ATGGTATCCAATG
1 ATGGTATCCAATG
36564749 ATGGTATCCAATG
1 ATGGTATCCAATG
36564762 A
1 A
36564763 AATTGAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (13 bp):
ATGGTATCCAATG
Found at i:36565593 original size:91 final size:91
Alignment explanation
Indices: 36565484--36565664 Score: 281
Period size: 91 Copynumber: 2.0 Consensus size: 91
36565474 TCAAAGACTT
* *
36565484 TTGGGTCTGCAAACTAAGTTAATTAGGCCCAACATATGGATTGCACCTCAAATCCCCGAACCATA
1 TTGGGTCTGCAAACTAAGTTAACTAGGCCCAACATATGGATTGCACCTCAAATCCCCGAAACATA
*
36565549 ATCTGAACATGGCCTACTTCATCAAA
66 ATCTGAACATGGCCAACTTCATCAAA
** * * * *
36565575 TTGGGTCTGCAAACTAAGTTAACTAGGCCCAATGTCTGGATTGCACCTCAGATCCCTGAAATATA
1 TTGGGTCTGCAAACTAAGTTAACTAGGCCCAACATATGGATTGCACCTCAAATCCCCGAAACATA
36565640 ATCTGAACATGGCCAACTTCATCAA
66 ATCTGAACATGGCCAACTTCATCAA
36565665 TATTTATATT
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
91 81 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (91 bp):
TTGGGTCTGCAAACTAAGTTAACTAGGCCCAACATATGGATTGCACCTCAAATCCCCGAAACATA
ATCTGAACATGGCCAACTTCATCAAA
Found at i:36571787 original size:23 final size:23
Alignment explanation
Indices: 36571753--36572151 Score: 273
Period size: 23 Copynumber: 17.1 Consensus size: 23
36571743 TATATATATA
* *
36571753 TATATACAAAATTGGACAACATT
1 TATACACAAAATTGGACAGCATT
* *
36571776 TATACACCAAATTGGGCAGCATAT
1 TATACACAAAATTGGACAGCAT-T
* * * * *
36571800 ATATATACCAATTTGGACAACACT
1 -TATACACAAAATTGGACAGCATT
* *
36571824 TATACACAAAATTTGACAGCATG
1 TATACACAAAATTGGACAGCATT
*
36571847 TATATACAAAATTGGACAGCATT
1 TATACACAAAATTGGACAGCATT
* * *
36571870 TATTCACCAAAATTGGGCAGCATA
1 TATACA-CAAAATTGGACAGCATT
* * * *
36571894 TATATACCAATTTGGATAGC-TCT
1 TATACACAAAATTGGACAGCAT-T
* *
36571917 TGTACACAAAATTTGACAGCATGT
1 TATACACAAAATTGGACAGCAT-T
* *
36571941 ATATACA-AAAATTAGACAACATT
1 -TATACACAAAATTGGACAGCATT
* * *
36571964 TATTCACCAAAATTGGGCAGCATA
1 TATACA-CAAAATTGGACAGCATT
* * * * *
36571988 TATATACCAATTTGGACAACACT
1 TATACACAAAATTGGACAGCATT
* * *
36572011 TATACACAAAATTTGATAGCATG
1 TATACACAAAATTGGACAGCATT
* *
36572034 TATATACAAAATTGAACAGCATT
1 TATACACAAAATTGGACAGCATT
* * *
36572057 TATTCACCAAAATTGGGCAGCATA
1 TATACA-CAAAATTGGACAGCATT
* * * *
36572081 TATATACCAATTTGGATAGC-TCT
1 TATACACAAAATTGGACAGCAT-T
* * *
36572104 TGTACACAAAATTTGACAGCATG
1 TATACACAAAATTGGACAGCATT
*
36572127 TATATACAAAATTGGACAGCATT
1 TATACACAAAATTGGACAGCATT
36572150 TA
1 TA
36572152 AGCATAAAAA
Statistics
Matches: 276, Mismatches: 89, Indels: 22
0.71 0.23 0.06
Matches are distributed among these distances:
22 7 0.03
23 176 0.64
24 71 0.26
25 22 0.08
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (23 bp):
TATACACAAAATTGGACAGCATT
Found at i:36571944 original size:46 final size:46
Alignment explanation
Indices: 36571753--36572146 Score: 337
Period size: 46 Copynumber: 8.4 Consensus size: 46
36571743 TATATATATA
* * * * *
36571753 TATATACAAAATTGGACAACAT-TTATACACCAAATTGGGCAGCATATA
1 TATATACAAAATTGGACAGC-TCTTATACACAAAATTTGACAGC--ATG
* * * *
36571801 TATATACCAATTTGGACAACACTTATACACAAAATTTGACAGCATG
1 TATATACAAAATTGGACAGCTCTTATACACAAAATTTGACAGCATG
* * * *
36571847 TATATACAAAATTGGACAGCAT-TTATTCACCAAAATTGGGCAGCATA
1 TATATACAAAATTGGACAGC-TCTTATACA-CAAAATTTGACAGCATG
* * * *
36571894 TATATACCAATTTGGATAGCTCTTGTACACAAAATTTGACAGCATG
1 TATATACAAAATTGGACAGCTCTTATACACAAAATTTGACAGCATG
* * * * * *
36571940 TATATACAAAAATTAGACAACAT-TTATTCACCAAAATTGGGCAGCATA
1 TATATAC-AAAATTGGACAGC-TCTTATACA-CAAAATTTGACAGCATG
* * * * *
36571988 TATATACCAATTTGGACAACACTTATACACAAAATTTGATAGCATG
1 TATATACAAAATTGGACAGCTCTTATACACAAAATTTGACAGCATG
* * * * *
36572034 TATATACAAAATTGAACAGCAT-TTATTCACCAAAATTGGGCAGCATA
1 TATATACAAAATTGGACAGC-TCTTATACA-CAAAATTTGACAGCATG
* * * *
36572081 TATATACCAATTTGGATAGCTCTTGTACACAAAATTTGACAGCATG
1 TATATACAAAATTGGACAGCTCTTATACACAAAATTTGACAGCATG
36572127 TATATACAAAATTGGACAGC
1 TATATACAAAATTGGACAGC
36572147 ATTTAAGCAT
Statistics
Matches: 271, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
46 114 0.42
47 99 0.37
48 58 0.21
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (46 bp):
TATATACAAAATTGGACAGCTCTTATACACAAAATTTGACAGCATG
Found at i:36572068 original size:187 final size:186
Alignment explanation
Indices: 36571753--36572151 Score: 719
Period size: 187 Copynumber: 2.1 Consensus size: 186
36571743 TATATATATA
36571753 TATATACAAAATTGGACAACATTTATACACCAAATTGGGCAGCATATATATATACCAATTTGGAC
1 TATATACAAAATTGGACAACATTTATACACCAAATTGGGCAGCA-ATATATATACCAATTTGGAC
*
36571818 AACACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAAT
65 AACACTTATACACAAAATTTGACAGCATGTATATACAAAATTGAACAGCATTTATTCACCAAAAT
36571883 TGGGCAGCATATATATACCAATTTGGATAGCTCTTGTACACAAAATTTGACAGCATG
130 TGGGCAGCATATATATACCAATTTGGATAGCTCTTGTACACAAAATTTGACAGCATG
* *
36571940 TATATACAAAAATTAGACAACATTTATTCACCAAAATTGGGCAGC-ATATATATACCAATTTGGA
1 TATATAC-AAAATTGGACAACATTTATACACC-AAATTGGGCAGCAATATATATACCAATTTGGA
*
36572004 CAACACTTATACACAAAATTTGATAGCATGTATATACAAAATTGAACAGCATTTATTCACCAAAA
64 CAACACTTATACACAAAATTTGACAGCATGTATATACAAAATTGAACAGCATTTATTCACCAAAA
36572069 TTGGGCAGCATATATATACCAATTTGGATAGCTCTTGTACACAAAATTTGACAGCATG
129 TTGGGCAGCATATATATACCAATTTGGATAGCTCTTGTACACAAAATTTGACAGCATG
*
36572127 TATATACAAAATTGGACAGCATTTA
1 TATATACAAAATTGGACAACATTTA
36572152 AGCATAAAAA
Statistics
Matches: 204, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
186 16 0.08
187 154 0.75
188 22 0.11
189 12 0.06
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (186 bp):
TATATACAAAATTGGACAACATTTATACACCAAATTGGGCAGCAATATATATACCAATTTGGACA
ACACTTATACACAAAATTTGACAGCATGTATATACAAAATTGAACAGCATTTATTCACCAAAATT
GGGCAGCATATATATACCAATTTGGATAGCTCTTGTACACAAAATTTGACAGCATG
Found at i:36572163 original size:93 final size:93
Alignment explanation
Indices: 36571753--36572151 Score: 638
Period size: 93 Copynumber: 4.3 Consensus size: 93
36571743 TATATATATA
* *
36571753 TATATACAAAATTGGACAACATTTATACACC-AAATTGGGCAGCATATATATATACCAATTTGGA
1 TATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGC--ATATATATACCAATTTGGA
36571817 CAACACTTATACACAAAATTTGACAGCATG
64 CAACACTTATACACAAAATTTGACAGCATG
*
36571847 TATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGATA
1 TATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACA
* * *
36571912 GCTCTTGTACACAAAATTTGACAGCATG
66 ACACTTATACACAAAATTTGACAGCATG
* *
36571940 TATATACAAAAATTAGACAACATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGAC
1 TATATAC-AAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGAC
*
36572005 AACACTTATACACAAAATTTGATAGCATG
65 AACACTTATACACAAAATTTGACAGCATG
* *
36572034 TATATACAAAATTGAACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGATA
1 TATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACA
* * *
36572099 GCTCTTGTACACAAAATTTGACAGCATG
66 ACACTTATACACAAAATTTGACAGCATG
36572127 TATATACAAAATTGGACAGCATTTA
1 TATATACAAAATTGGACAGCATTTA
36572152 AGCATAAAAA
Statistics
Matches: 281, Mismatches: 22, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
93 154 0.55
94 115 0.41
95 12 0.04
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (93 bp):
TATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACA
ACACTTATACACAAAATTTGACAGCATG
Found at i:36572800 original size:28 final size:28
Alignment explanation
Indices: 36572768--36572893 Score: 157
Period size: 28 Copynumber: 4.5 Consensus size: 28
36572758 TTTAATAAGT
* *
36572768 TCGCACACTTAGTGCTCAATAATCT-AAC
1 TCGCACACTTAGTGCTCTACAAT-TAAAC
* *
36572796 TCGCACACTTAGTGCTTTACCATTAAAC
1 TCGCACACTTAGTGCTCTACAATTAAAC
36572824 TCGCACACTTAGTGCT-TCACAATTAAAC
1 TCGCACACTTAGTGCTCT-ACAATTAAAC
* * *
36572852 TCGCACGCTTAGTGCTTTACAATTAAAT
1 TCGCACACTTAGTGCTCTACAATTAAAC
36572880 TCGCACACTTAGTG
1 TCGCACACTTAGTG
36572894 TCGAAAGTCA
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
27 2 0.02
28 84 0.97
29 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCTACAATTAAAC
Found at i:36572833 original size:56 final size:56
Alignment explanation
Indices: 36572768--36572893 Score: 184
Period size: 56 Copynumber: 2.2 Consensus size: 56
36572758 TTTAATAAGT
* *
36572768 TCGCACACTTAGTGC-TCAATAATCT-AACTCGCACACTTAGTGCTTTACCATTAAAC
1 TCGCACACTTAGTGCTTC-ACAAT-TAAACTCGCACACTTAGTGCTTTACAATTAAAC
* *
36572824 TCGCACACTTAGTGCTTCACAATTAAACTCGCACGCTTAGTGCTTTACAATTAAAT
1 TCGCACACTTAGTGCTTCACAATTAAACTCGCACACTTAGTGCTTTACAATTAAAC
36572880 TCGCACACTTAGTG
1 TCGCACACTTAGTG
36572894 TCGAAAGTCA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
55 1 0.02
56 61 0.95
57 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (56 bp):
TCGCACACTTAGTGCTTCACAATTAAACTCGCACACTTAGTGCTTTACAATTAAAC
Found at i:36575665 original size:50 final size:50
Alignment explanation
Indices: 36575606--36575744 Score: 179
Period size: 50 Copynumber: 2.8 Consensus size: 50
36575596 ACATGGGAAA
** ** * *
36575606 GCCATGTCCCAGACATGGTCTTACTTGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACGAGGGACCTCTCATATCGGTGCCAAC
* * *
36575656 GCCATGTCCCAAACATGGTCTTACGAGGGACCTCTTATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACGAGGGACCTCTCATATCGGTGCCAAC
* *
36575706 GCCATGTCCAAGACATGGTCTTACAAGGGACCTCTCATA
1 GCCATGTCCCAGACATGGTCTTACGAGGGACCTCTCATA
36575745 ACCGCAATAA
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 75 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACGAGGGACCTCTCATATCGGTGCCAAC
Found at i:36578443 original size:24 final size:22
Alignment explanation
Indices: 36578416--36578466 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
36578406 ATTTAGCCTA
* *
36578416 TTTTATTTTATTTTATTTTTATAT
1 TTTTATTTTAGTTTA-GTTTA-AT
*
36578440 TTTTGTTTTAGTTTAGTTTAAT
1 TTTTATTTTAGTTTAGTTTAAT
36578462 TTTTA
1 TTTTA
36578467 CATTCTAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 6 0.26
23 4 0.17
24 13 0.57
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.75
Consensus pattern (22 bp):
TTTTATTTTAGTTTAGTTTAAT
Found at i:36582371 original size:14 final size:14
Alignment explanation
Indices: 36582352--36582386 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
36582342 CTTATATTGG
36582352 TAGTTTTTTATCAT
1 TAGTTTTTTATCAT
*
36582366 TAGTTTTTTATTAT
1 TAGTTTTTTATCAT
*
36582380 TTGTTTT
1 TAGTTTT
36582387 AATACTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.03, G:0.09, T:0.71
Consensus pattern (14 bp):
TAGTTTTTTATCAT
Found at i:36583965 original size:21 final size:21
Alignment explanation
Indices: 36583935--36583987 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
36583925 ATACCACTGA
*
36583935 TTTTATTTTTTTATTTTAGTTG
1 TTTTATTTTTGT-TTTTAGTTG
*
36583957 TTTTGTTTTTGTTTTTAGTTG
1 TTTTATTTTTGTTTTTAGTTG
36583978 TTTTATTTTT
1 TTTTATTTTT
36583988 ATTGTCTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.09, C:0.00, G:0.11, T:0.79
Consensus pattern (21 bp):
TTTTATTTTTGTTTTTAGTTG
Found at i:36588500 original size:49 final size:48
Alignment explanation
Indices: 36588443--36588548 Score: 133
Period size: 49 Copynumber: 2.2 Consensus size: 48
36588433 CACATGGCCT
* * *
36588443 ACCACACGGTCTGCAATG-TTTCACATGGTCATGTGCTCTACACGGCCA
1 ACCACACGGGCTGCAA-GATTTCACACGGTCATGTGCTCTACACGACCA
* *
36588491 AGCCACACGGGCTGCAAGATTTCACACGGTCTTGTGCTTTACACGACCA
1 A-CCACACGGGCTGCAAGATTTCACACGGTCATGTGCTCTACACGACCA
36588540 ACCAACACG
1 ACC-ACACG
36588549 ACCTGCAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
48 4 0.08
49 46 0.92
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (48 bp):
ACCACACGGGCTGCAAGATTTCACACGGTCATGTGCTCTACACGACCA
Found at i:36592210 original size:5 final size:5
Alignment explanation
Indices: 36592194--36592230 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
36592184 AATACTTATT
36592194 TTTTA -TTT- TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
36592231 GTTGATATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 6 0.20
5 24 0.80
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTTA
Found at i:36595719 original size:34 final size:34
Alignment explanation
Indices: 36595676--36595749 Score: 139
Period size: 34 Copynumber: 2.2 Consensus size: 34
36595666 CACAATTGCA
*
36595676 AAGGAAGCATGGAAAATACTTCAAACTGCTGACC
1 AAGGAAGCATGGAAAATACTTCAAACTGCTCACC
36595710 AAGGAAGCATGGAAAATACTTCAAACTGCTCACC
1 AAGGAAGCATGGAAAATACTTCAAACTGCTCACC
36595744 AAGGAA
1 AAGGAA
36595750 CTAATATGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.16
Consensus pattern (34 bp):
AAGGAAGCATGGAAAATACTTCAAACTGCTCACC
Found at i:36605280 original size:13 final size:13
Alignment explanation
Indices: 36605262--36605291 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
36605252 TCCAGCAACT
36605262 ATGAATTTATTTC
1 ATGAATTTATTTC
*
36605275 ATGAATTTATTTG
1 ATGAATTTATTTC
36605288 ATGA
1 ATGA
36605292 TGATCCAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.50
Consensus pattern (13 bp):
ATGAATTTATTTC
Found at i:36605445 original size:50 final size:50
Alignment explanation
Indices: 36605386--36605728 Score: 461
Period size: 50 Copynumber: 6.8 Consensus size: 50
36605376 ATTTGGGTAA
* *
36605386 AGAGGTCCCATGTAAGACCTTGTCTGGGACATGGCATTAGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
36605436 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
36605486 ACAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCTAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
36605536 AGAGGTCCTATGTAAGATCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
36605586 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGCCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** * * * *
36605636 GGAGGTCCCCCGAAAGACCATGTCTGGGATATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
36605686 AGTACATCCCACGTAAGATCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36605729 TGTTATTATC
Statistics
Matches: 256, Mismatches: 36, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
50 224 0.88
51 32 0.12
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:36613111 original size:50 final size:50
Alignment explanation
Indices: 36613032--36613323 Score: 390
Period size: 50 Copynumber: 5.8 Consensus size: 50
36613022 TTTGGGTAAG
* *
36613032 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAACGAGATTA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
* * * *
36613082 GAGCTCCCATGTAAGACCATATCTGGGACATGACGTTGGCACCGAGATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
* *
36613132 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGG
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
36613182 GAGGTCCCATGTAAGACCATGTCTAGGG-CATGGCATTGGCACCGAGATGA
1 GAGGTCCCATGTAAGACCATGTCT-GGGACATGGCATTGGCACCGAGATGA
** *
36613232 GAGGTCCCCCGTAAGACCATGTCTGGGACATGGCA-TGGACACCGACATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG-CACCGAGATGA
** ** * *
36613282 GTACATCTTATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 G-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36613324 TGTTATTATC
Statistics
Matches: 214, Mismatches: 23, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
49 6 0.03
50 174 0.81
51 31 0.14
52 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
Found at i:36633603 original size:24 final size:24
Alignment explanation
Indices: 36633575--36633626 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
36633565 TTTCTAGAAG
* * *
36633575 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGAATTTATAAGCATAATAT
*
36633599 ATTTAGAATTTATAAGCATAATTT
1 ATTTAGAATTTATAAGCATAATAT
36633623 ATTT
1 ATTT
36633627 GACCTACGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTAGAATTTATAAGCATAATAT
Found at i:36635551 original size:128 final size:129
Alignment explanation
Indices: 36635397--36635653 Score: 507
Period size: 128 Copynumber: 2.0 Consensus size: 129
36635387 TTATTTTCCA
36635397 TTCTCTTCTACTTCTCCCTCTATTTTTCTCCATTCTCCATCTCTTTTAACATAGTTTTTCTATGT
1 TTCTCTTCTACTTCTCCCTCTATTTTTCTCCATTCTCCATCTCTTTTAACATAGTTTTTCTATGT
36635462 TTTCCATTTGTTAAAACTTTTTTATGTTTGTGAAAAAAGAATAGGCAAAAGCTAAAACCAAAAT
66 TTTCCATTTGTTAAAACTTTTTTATGTTTGTGAAAAAAGAATAGGCAAAAGCTAAAACCAAAAT
36635526 TTCTCTTCTA-TTCTCCCTCTATTTTTCTCCATTCTCCATCTCTTTTAACATAGTTTTTCTATGT
1 TTCTCTTCTACTTCTCCCTCTATTTTTCTCCATTCTCCATCTCTTTTAACATAGTTTTTCTATGT
36635590 TTTCCATTTGTTAAAACTTTTTTATGTTTGTGAAAAAAGAATAGGCAAAAGCTAAAACCAAAAT
66 TTTCCATTTGTTAAAACTTTTTTATGTTTGTGAAAAAAGAATAGGCAAAAGCTAAAACCAAAAT
36635654 AAAATTTGCT
Statistics
Matches: 128, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
128 118 0.92
129 10 0.08
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.44
Consensus pattern (129 bp):
TTCTCTTCTACTTCTCCCTCTATTTTTCTCCATTCTCCATCTCTTTTAACATAGTTTTTCTATGT
TTTCCATTTGTTAAAACTTTTTTATGTTTGTGAAAAAAGAATAGGCAAAAGCTAAAACCAAAAT
Found at i:36637962 original size:31 final size:30
Alignment explanation
Indices: 36637927--36637986 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36637917 GGAGATGGGA
36637927 TGGGA-AGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAGAGAGAA-AAAA-TTTTAGGGGAAAAG
* *
36637958 TGGGAGGGAGAAAAAATTTTGGGGGAAAA
1 TGGGAGAGAGAAAAAATTTTAGGGGAAAA
36637987 TAAAATGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 12 0.46
31 9 0.35
32 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.38, T:0.18
Consensus pattern (30 bp):
TGGGAGAGAGAAAAAATTTTAGGGGAAAAG
Found at i:36638289 original size:9 final size:9
Alignment explanation
Indices: 36638272--36638302 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36638262 TCAAGTTGAT
36638272 TCGAATAAC
1 TCGAATAAC
*
36638281 TCGATTAAC
1 TCGAATAAC
36638290 TCGAATAAC
1 TCGAATAAC
36638299 TCGA
1 TCGA
36638303 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:36638822 original size:18 final size:16
Alignment explanation
Indices: 36638788--36638846 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 16
36638778 TATAATTTTT
* *
36638788 TTTTTTACTTTT-GAA
1 TTTTTTATTTTTAAAA
36638803 TTTTTTATTTCTTGAAAA
1 TTTTTTATTT-TT-AAAA
36638821 TTTTTATATTTTTAAAA
1 TTTTT-TATTTTTAAAA
*
36638838 TTATTTATT
1 TTTTTTATT
36638847 GACATATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
15 9 0.24
16 6 0.16
17 8 0.22
18 9 0.24
19 5 0.14
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.66
Consensus pattern (16 bp):
TTTTTTATTTTTAAAA
Found at i:36638824 original size:17 final size:16
Alignment explanation
Indices: 36638789--36638846 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 16
36638779 ATAATTTTTT
* *
36638789 TTTTTACTTTTG-AAT
1 TTTTTATTTTTGAAAA
36638804 TTTTTATTTCTTGAAAA
1 TTTTTATTT-TTGAAAA
*
36638821 TTTTTATATTTTTAAAA
1 TTTTTAT-TTTTGAAAA
36638838 TTATTTATT
1 TT-TTTATT
36638847 GACATATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 8 0.22
16 3 0.08
17 18 0.50
18 7 0.19
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (16 bp):
TTTTTATTTTTGAAAA
Found at i:36638825 original size:19 final size:17
Alignment explanation
Indices: 36638801--36638845 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
36638791 TTTACTTTTG
36638801 AATTTTT-TATTTCTTGAA
1 AATTTTTATATTT-TT-AA
36638819 AATTTTTATATTTTTAA
1 AATTTTTATATTTTTAA
36638836 AATTATTTAT
1 AATT-TTTAT
36638846 TGACATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.24
18 14 0.56
19 5 0.20
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
AATTTTTATATTTTTAA
Found at i:36639621 original size:20 final size:20
Alignment explanation
Indices: 36639593--36639630 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36639583 CAAAGGGGCG
36639593 TCAAACTTTTTAATGTATAC
1 TCAAACTTTTTAATGTATAC
* *
36639613 TCAATCTTTTTCATGTAT
1 TCAAACTTTTTAATGTAT
36639631 TTGGAATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.16, G:0.05, T:0.50
Consensus pattern (20 bp):
TCAAACTTTTTAATGTATAC
Found at i:36656270 original size:5 final size:5
Alignment explanation
Indices: 36656260--36656310 Score: 68
Period size: 5 Copynumber: 10.2 Consensus size: 5
36656250 ATATATTAAT
* *
36656260 TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA -TCAA TTTTAA ATCAA TTCAA
1 TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA -TTCAA TTCAA TTCAA
36656310 T
1 T
36656311 AATCAAAGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
4 4 0.10
5 33 0.82
6 3 0.08
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TTCAA
Found at i:36657959 original size:2 final size:2
Alignment explanation
Indices: 36657952--36657998 Score: 67
Period size: 2 Copynumber: 23.0 Consensus size: 2
36657942 TGAGTTTTTG
* *
36657952 AT AT AT AT AT TT TT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36657995 AT AT
1 AT AT
36657999 TTGCATCGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 41 0.98
3 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
AT
Found at i:36661114 original size:16 final size:16
Alignment explanation
Indices: 36661091--36661135 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
36661081 ATTTCTAAAT
36661091 AAATAATTATTTTA-A
1 AAATAATTATTTTATA
**
36661106 AAATAAATTAAATTATA
1 AAAT-AATTATTTTATA
36661123 AAATAATTATTTT
1 AAATAATTATTTT
36661136 TAATTGTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
15 4 0.17
16 15 0.62
17 5 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATAATTATTTTATA
Found at i:36667411 original size:44 final size:44
Alignment explanation
Indices: 36667332--36667901 Score: 203
Period size: 44 Copynumber: 12.6 Consensus size: 44
36667322 CATAGCAAAC
* * * * *
36667332 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACTAGT
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGT
*
36667376 CTTATCTCCTTGAAGTTGCAGTGGAGCAGAATGAAGATAGCGAA-T
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-C-AAGT
* * * *
36667421 CTTATTTTCC-TGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTGCAGAT
1 CTTA-TCTCCTTGAAGTTGCAGTGGAGCAGATTGAAG--ATACA----AG-T
* * **
36667472 CTTATCT-CTCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAAAC
1 CTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAGT
* *
36667513 CTTATCT-CTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGT
1 CTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATACAAGT
* *
36667557 CTTATCTCTTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAA-T
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-C-AAGT
* * * * *
36667602 CTTAAT-TCCCTGAAGTTGTAGTGGAACTGATTGAAGCTATAAATTGTAGAT
1 CTT-ATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAG--ATACA----AG-T
** * * * *
36667653 CTTATCT-CTCTGAAGTTGCAGCAGAACAGA-T-CATAT-CAAAT
1 CTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATACAAGT
* * * * **
36667694 CTTATCT-CTCTGAAGTTGCAGTAGAGTAGA-T-CATAT-CAAAC
1 CTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATACAAGT
* * * * * *
36667735 CTTATCT-CTCTAAAGTTGTAGTGGAACAGGTTAAAAATAAACCAA-T
1 CTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGAT--A-CAAGT
* * *
36667781 CTTATCTCCCTGAAGGTGCAGTGGAGCAGATTGAAGACAGGATACAAAT
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATT---GA-A-GATACAAGT
* * * **
36667830 CTTATCT-CTCTGAAGTTGTAGTGGAGCAGATTAAAGACACAAAC
1 CTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATACAAGT
* *
36667874 CTTATCTTCC-TGAAGTTGTAGTAGAGCA
1 CTTATC-TCCTTGAAGTTGCAGTGGAGCA
36667902 AATTAAAGCT
Statistics
Matches: 407, Mismatches: 71, Indels: 96
0.71 0.12 0.17
Matches are distributed among these distances:
41 91 0.22
42 4 0.01
43 3 0.01
44 100 0.25
45 69 0.17
46 37 0.09
47 12 0.03
48 4 0.01
49 34 0.08
50 8 0.02
51 45 0.11
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (44 bp):
CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGT
Found at i:36667444 original size:89 final size:88
Alignment explanation
Indices: 36667340--36667626 Score: 287
Period size: 89 Copynumber: 3.2 Consensus size: 88
36667330 ACCTTATCTC
*
36667340 CCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAG
1 CCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAG
36667405 AATGAAGATAGCGAATCTTATTTT
66 AATGAAGATAGCGAATCTTA-TTT
* * * *
36667429 CCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTGCAGATCTTATCT-CTCTGAAGTTGCAG
1 CCTGAAGTTGCAGTGGAGCAGGTTGAAG-T-T--ACT--AG-TCTTATCTCCT-TGAAGTTGCAG
* * * * *
36667493 TAGAGCAG-AT---CATAGCAAACCTTATCT
58 TGGAGCAGAATGAAGATAGCGAATCTTATTT
* * * *
36667520 CTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCTTTGAAGTTGCAGTGGAGCA
1 C-CTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCA
* *
36667585 GACTGAAGATAGCGAATCTTAATTC
65 GAATGAAGATAGCGAATCTT-ATTT
*
36667610 CCTGAAGTTGTAGTGGA
1 CCTGAAGTTGCAGTGGA
36667627 ACTGATTGAA
Statistics
Matches: 156, Mismatches: 27, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
85 26 0.17
86 4 0.03
88 1 0.01
89 48 0.31
90 5 0.03
91 4 0.03
92 34 0.22
93 2 0.01
95 6 0.04
96 26 0.17
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (88 bp):
CCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAG
AATGAAGATAGCGAATCTTATTT
Found at i:36667502 original size:51 final size:47
Alignment explanation
Indices: 36667375--36667718 Score: 180
Period size: 45 Copynumber: 7.6 Consensus size: 47
36667365 AAGTTACTAG
* * *
36667375 TCTTATCTC-CTTGAAGTTGCAGTGGAGCAGAATGAAG-AT-AGC-GAA
1 TCTTATCTCTC-TGAAGTTGCAGTAGAACAGATTGAAGCATAAGCAG-A
* * *
36667420 TCTTAT-TTTCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTGCAGA
1 TCTTATCTCT-CTGAAGTTGCAGTAGAACAGATTGAAGC-AT-AA--GCAGA
* *
36667471 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T----CAT-AGCAAA
1 TCTTATCTCTCTGAAGTTGCAGTAGAACAGATTGAAGCATAAGCAGA
* * *
36667512 CCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAG-AT-A-CA-A
1 TCTTATCTCTCTGAAGTTGCAGTAGAACAGATTGAAGCATAAGCAGA
* * * *
36667555 GTCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTGAAG-AT-AGC-GAA
1 -TCTTATCTCTCTGAAGTTGCAGTAGAACAGATTGAAGCATAAGCAG-A
* * * * *
36667601 TCTTAAT-TCCCTGAAGTTGTAGTGGAACTGATTGAAGCTATAAATTGTAGA
1 TCTT-ATCTCTCTGAAGTTGCAGTAGAACAGATTGAAGC-AT-AA--GCAGA
* * *
36667652 TCTTATCTCTCTGAAGTTGCAGCAGAACAGA-T----CAT-ATCAAA
1 TCTTATCTCTCTGAAGTTGCAGTAGAACAGATTGAAGCATAAGCAGA
36667693 TCTTATCTCTCTGAAGTTGCAGTAGA
1 TCTTATCTCTCTGAAGTTGCAGTAGA
36667719 GTAGATCATA
Statistics
Matches: 239, Mismatches: 32, Indels: 60
0.72 0.10 0.18
Matches are distributed among these distances:
41 60 0.25
42 1 0.00
43 3 0.01
44 38 0.16
45 65 0.27
46 6 0.03
47 4 0.02
49 2 0.01
50 4 0.02
51 52 0.22
52 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (47 bp):
TCTTATCTCTCTGAAGTTGCAGTAGAACAGATTGAAGCATAAGCAGA
Found at i:36667529 original size:41 final size:41
Alignment explanation
Indices: 36667470--36667752 Score: 183
Period size: 41 Copynumber: 6.5 Consensus size: 41
36667460 TAAATTGCAG
36667470 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAA
* * *
36667511 ACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGA-AGATACAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCA-GATCATAG---CAA
* * * * *
36667555 GTCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAA
* * * * * * *
36667600 ATCTTAAT-TCCCTGAAGTTGTAGTGGAACTGATTGAAGCTATAAATTGTAG
1 ATCTT-ATCTCTCTGAAGTTGCAGT---A--GA--GCAG--AT-CATAGCAA
* * *
36667651 ATCTTATCTCTCTGAAGTTGCAGCAGAACAGATCATATCAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAA
* *
36667692 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATATCAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAA
* *
36667733 ACCTTATCTCTCTAAAGTTG
1 ATCTTATCTCTCTGAAGTTG
36667753 TAGTGGAACA
Statistics
Matches: 187, Mismatches: 35, Indels: 40
0.71 0.13 0.15
Matches are distributed among these distances:
41 90 0.48
42 5 0.03
43 1 0.01
44 32 0.17
45 19 0.10
46 4 0.02
47 2 0.01
48 3 0.02
50 4 0.02
51 22 0.12
52 3 0.02
53 1 0.01
54 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (41 bp):
ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAA
Found at i:36667622 original size:181 final size:181
Alignment explanation
Indices: 36667318--36667719 Score: 669
Period size: 181 Copynumber: 2.2 Consensus size: 181
36667308 GATGGATTGA
* * * * *
36667318 AGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACTAGTCTTATCT
1 AGATCATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCT
* *
36667383 CCTTGAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTATTTTCCTGAAGTTGTAGTGGAAC
66 CCTTGAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTAATTCCCTGAAGTTGTAGTGGAAC
* *
36667448 AGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
131 AGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGCAGAAC
36667499 AGATCATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCT
1 AGATCATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCT
* *
36667564 CTTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTAATTCCCTGAAGTTGTAGTGGAAC
66 CCTTGAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTAATTCCCTGAAGTTGTAGTGGAAC
* *
36667629 TGATTGAAGCTATAAATTGTAGATCTTATCTCTCTGAAGTTGCAGCAGAAC
131 AGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGCAGAAC
* *
36667680 AGATCATATCAAATCTTATCTCTCTGAAGTTGCAGTAGAG
1 AGATCATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAG
36667720 TAGATCATAT
Statistics
Matches: 206, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
181 206 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (181 bp):
AGATCATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCT
CCTTGAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTAATTCCCTGAAGTTGTAGTGGAAC
AGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAGCAGAAC
Found at i:36667672 original size:96 final size:94
Alignment explanation
Indices: 36667375--36667673 Score: 341
Period size: 96 Copynumber: 3.2 Consensus size: 94
36667365 AAGTTACTAG
* *
36667375 TCTTATCTC-CTTGAAGTTGCAGTGGAGCAGAATGAAGATAGCGAATCTTATTTTCCTGAAGTTG
1 TCTTATCTCTC-TGAAGTTGCAGTGGAGCAG-ATGAAGATAGCGAATCTTAATTCCCTGAAGTTG
36667439 TAGTGGAACAGATTGAAGCTATAAATTGCAGA
64 TAGTGGAACAGATTGAAGCTATAAATTG-AGA
* * * * * *
36667471 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT---CATAGCAAACCTT-ATCTCTCTGAAGTTGC
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATGAAGATAGCGAATCTTAAT-TCCCTGAAGTTGT
* * * *
36667532 AGTAGAGCAGGTTGAAG--ATACA---AG-
65 AGTGGAACAGATTGAAGCTATAAATTGAGA
*
36667556 TCTTATCTCTTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTAATTCCCTGAAGTTGT
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-TGAAGATAGCGAATCTTAATTCCCTGAAGTTGT
*
36667621 AGTGGAACTGATTGAAGCTATAAATTGTAGA
65 AGTGGAACAGATTGAAGCTATAAATTG-AGA
36667652 TCTTATCTCTCTGAAGTTGCAG
1 TCTTATCTCTCTGAAGTTGCAG
36667674 CAGAACAGAT
Statistics
Matches: 164, Mismatches: 25, Indels: 28
0.76 0.12 0.13
Matches are distributed among these distances:
85 29 0.18
86 3 0.02
89 34 0.21
90 6 0.04
91 5 0.03
92 34 0.21
95 4 0.02
96 48 0.29
97 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (94 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATGAAGATAGCGAATCTTAATTCCCTGAAGTTGTA
GTGGAACAGATTGAAGCTATAAATTGAGA
Found at i:36667881 original size:49 final size:48
Alignment explanation
Indices: 36667735--36667909 Score: 166
Period size: 49 Copynumber: 3.8 Consensus size: 48
36667725 CATATCAAAC
* * * *
36667735 CTTATCTCTCTAAAGTTGTAGTGGAACAGGTTAAA-A-ATAAACCAAT
1 CTTATCTCTCTGAAGTTGTAGTGGAGCAGATTAAAGACACAAACCAAT
* * * * * * *
36667781 CTTATCTCCCTGAAGGTGCAGTGGAGCAGATTGAAGACAGGATACAAAT
1 CTTATCTCTCTGAAGTTGTAGTGGAGCAGATTAAAGACA-CAAACCAAT
36667830 CTTATCTCTCTGAAGTTGTAGTGGAGCAGATTAAAGACACAAA-C---
1 CTTATCTCTCTGAAGTTGTAGTGGAGCAGATTAAAGACACAAACCAAT
* *
36667874 CTTATCT-TCCTGAAGTTGTAGTAGAGCAAATTAAAG
1 CTTATCTCT-CTGAAGTTGTAGTGGAGCAGATTAAAG
36667910 CTATTAATCT
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.01
44 32 0.30
46 28 0.26
47 1 0.01
48 3 0.03
49 41 0.39
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (48 bp):
CTTATCTCTCTGAAGTTGTAGTGGAGCAGATTAAAGACACAAACCAAT
Found at i:36667922 original size:44 final size:44
Alignment explanation
Indices: 36667824--36667931 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 44
36667814 AAGACAGGAT
* *
36667824 ACAAATCTTATC-TCTCTGAAGTTGTAGTGGAGCAGATTAAAGAC
1 ACAAATCTTATCTTC-CTGAAGTTGTAGTAGAGCAAATTAAAGAC
*
36667868 ACAAACCTTATCTTCCTGAAGTTGTAGTAGAGCAAATTAAAG-C
1 ACAAATCTTATCTTCCTGAAGTTGTAGTAGAGCAAATTAAAGAC
** *
36667911 TATTAATCTTATCTCCCTGAA
1 -ACAAATCTTATCTTCCTGAA
36667932 ATTACAATGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 1 0.02
44 52 0.95
45 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (44 bp):
ACAAATCTTATCTTCCTGAAGTTGTAGTAGAGCAAATTAAAGAC
Found at i:36668081 original size:44 final size:44
Alignment explanation
Indices: 36668013--36668135 Score: 138
Period size: 45 Copynumber: 2.8 Consensus size: 44
36668003 ATAGTAAGTT
* *
36668013 TTATCTCCCTGAAATTGTAGTGGAGCAGATTAAAACCACAAATC
1 TTATCTCCTTGAAATTGCAGTGGAGCAGATTAAAACCACAAATC
* * * **
36668057 TTATCTCCTTAAAATTGCAATGGAGCAGATTGCAAACCATTAATC
1 TTATCTCCTTGAAATTGCAGTGGAGCAGATT-AAAACCACAAATC
* * * *
36668102 TTATCTCTTTGAAGTTACAGTAGAGCAGATTAAA
1 TTATCTCCTTGAAATTGCAGTGGAGCAGATTAAA
36668136 GCTACAAGTT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 29 0.45
45 35 0.55
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (44 bp):
TTATCTCCTTGAAATTGCAGTGGAGCAGATTAAAACCACAAATC
Found at i:36668108 original size:45 final size:44
Alignment explanation
Indices: 36668013--36668108 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
36668003 ATAGTAAGTT
* * *
36668013 TTATCTCCCTGAAATTGTAGTGGAGCAGATTAAAACCACAAATC
1 TTATCTCCCTAAAATTGCAATGGAGCAGATTAAAACCACAAATC
* * **
36668057 TTATCTCCTTAAAATTGCAATGGAGCAGATTGCAAACCATTAATC
1 TTATCTCCCTAAAATTGCAATGGAGCAGATT-AAAACCACAAATC
36668102 TTATCTC
1 TTATCTC
36668109 TTTGAAGTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 27 0.61
45 17 0.39
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (44 bp):
TTATCTCCCTAAAATTGCAATGGAGCAGATTAAAACCACAAATC
Found at i:36669745 original size:60 final size:60
Alignment explanation
Indices: 36669626--36669737 Score: 138
Period size: 60 Copynumber: 1.9 Consensus size: 60
36669616 TATCATTCTC
* * * * *
36669626 TTACTTTTAAAATATTCAAATTTAATATTAGGTATTATTTTATCTATCTATTTATTTTTT
1 TTACTCTTAAAATATTCAAACTTAACATTAGGTATCATATTATCTATCTATTTATTTTTT
* *
36669686 TTACTCTTAAAATATTTAAACTTAACATTATGTATACATATT-T-TATCTATTT
1 TTACTCTTAAAATATTCAAACTTAACATTAGGTAT-CATATTATCTATCTATTT
36669738 CGTTTTTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
59 9 0.20
60 31 0.70
61 4 0.09
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (60 bp):
TTACTCTTAAAATATTCAAACTTAACATTAGGTATCATATTATCTATCTATTTATTTTTT
Found at i:36670950 original size:122 final size:117
Alignment explanation
Indices: 36670776--36671067 Score: 449
Period size: 122 Copynumber: 2.4 Consensus size: 117
36670766 TTAAAAAGAG
* *
36670776 AAAATTTAGATTTTTAAAAATGAAAATATGTTTTTTAGTCATTTTAAAGGAAAAACTATTTCGAA
1 AAAATTTAGATTTTTAAAAATAAAAATAT-TTTTTTATTCATTTTAAAGGAAAAACTATTTCGAA
*
36670841 ATAAAAGTTTTGATCTTTTAGAAAAGTAGTGATTTTTTTAAAAGAAAAAAAAAA
65 ATAAAAGTTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAG-AAAAAAAAA
*
36670895 GAAGGAAGTTTAGATTTTTAAAAATAAAAATATTTTTTTATTCATTTTAAAGGAAAAACTATTTT
1 -AA--AA-TTTAGATTTTTAAAAATAAAAATATTTTTTTATTCATTTTAAAGGAAAAACTATTTC
* *
36670960 GAAATAAAAGTTTTGATCTTTAAGAAAAGTTGTGATTTTTTTAAAAGAAAAAAGAA
62 GAAATAAAAGTTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAAAAAAA
* *
36671016 AAAATTTTGATTTTTATAAATAAAAATAATTTTTTTATTCATTTTAAAGGAA
1 AAAATTTAGATTTTTAAAAATAAAAAT-ATTTTTTTATTCATTTTAAAGGAA
36671068 GGTTTAAAAT
Statistics
Matches: 160, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
117 21 0.13
118 26 0.16
120 4 0.03
121 8 0.05
122 77 0.48
123 24 0.15
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (117 bp):
AAAATTTAGATTTTTAAAAATAAAAATATTTTTTTATTCATTTTAAAGGAAAAACTATTTCGAAA
TAAAAGTTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAAAAAAA
Found at i:36671231 original size:20 final size:20
Alignment explanation
Indices: 36671206--36671247 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
36671196 AATATGTTTT
36671206 TTAGTCATTTTAAAGGAAAG
1 TTAGTCATTTTAAAGGAAAG
36671226 TTAGTCATTTTAAAGGAAAG
1 TTAGTCATTTTAAAGGAAAG
36671246 TT
1 TT
36671248 TAAAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (20 bp):
TTAGTCATTTTAAAGGAAAG
Found at i:36671248 original size:156 final size:153
Alignment explanation
Indices: 36670949--36671227 Score: 366
Period size: 156 Copynumber: 1.8 Consensus size: 153
36670939 TTTTAAAGGA
* * * *
36670949 AAAACTATTTTGAAATAAAAGTTTTGATCTTTAAGAAAAGTTGTGATTTTTTTAAAAGAAAAAAG
1 AAAACTATTTCGAAATAAAAGCTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAAAAA
** * * * *
36671014 AAAAAATTTTGATTTTTATAAATAAAAATAATTTTTTTATTCATTTTAAAGGAAGGTTTAAAATT
66 AAAAAATTTAAATTTTAAAAAATAAAAATAATTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATT
36671079 TTAAAACAAAGTTTTAATCTTTT
131 TTAAAACAAAGTTTTAATCTTTT
* * *
36671102 AAAACTATTTCGAAAT-AAAGCTTTGATTTTTAATAAATGTAGTGA-TTTTTTAAAAGAAAAAGA
1 AAAACTATTTCGAAATAAAAGCTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAAA-A
36671165 AAAGGAGAAAGTTTAAATTTTAAAAAATAAAAAT-ATGTTTTTTAGTCATTTTAAAGGAAAGTT
65 AAA--A-AAA-TTTAAATTTTAAAAAATAAAAATAAT-TTTTTTAGTCATTTTAAAGGAAAGTT
36671228 AGTCATTTTA
Statistics
Matches: 107, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
151 16 0.15
152 27 0.25
153 15 0.14
154 1 0.01
155 5 0.05
156 43 0.40
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (153 bp):
AAAACTATTTCGAAATAAAAGCTTTGATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAAAAA
AAAAAATTTAAATTTTAAAAAATAAAAATAATTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATT
TTAAAACAAAGTTTTAATCTTTT
Found at i:36671255 original size:20 final size:20
Alignment explanation
Indices: 36671212--36671259 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
36671202 TTTTTTAGTC
**
36671212 ATTTTAAAGGAAAGTTAGTC
1 ATTTTAAAGGAAAGTTAGAA
36671232 ATTTTAAAGGAAAGTTTA-AA
1 ATTTTAAAGGAAAG-TTAGAA
36671252 ATTTTAAA
1 ATTTTAAA
36671260 ATAAAGTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.46, C:0.02, G:0.15, T:0.38
Consensus pattern (20 bp):
ATTTTAAAGGAAAGTTAGAA
Found at i:36671384 original size:176 final size:176
Alignment explanation
Indices: 36671054--36671400 Score: 525
Period size: 176 Copynumber: 2.0 Consensus size: 176
36671044 ATTTTTTTAT
* *
36671054 TCATTTTAAAGGAAGGTTTAAAATTTTAAAACAAAGTTTTAATCTTTTAAAACTATTTCGAAATA
1 TCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTCTAATCTTTTAAAACTATTTCGAAATA
* * * * * *
36671119 AAGCTTTGATTTTTAATAAATGTAGTGATTTTTTAAAAGAAAAAGAAAAGGAGAAAGTTTAAATT
66 AAACTTTGATTTTTAAGAAAAGTAATGATTTTTTAAAAGAAAAAGAAAAAGAGAAAATTTAAATT
36671184 TTAAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAGTTAG
131 TTAAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAGTTAG
* * * *
36671230 TCATTTTAAAGGAAAGTTTAAAATTTTAAAATAAAGTTCTGATCTTTTTAAACTATTTTGAAATA
1 TCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTCTAATCTTTTAAAACTATTTCGAAATA
* * *
36671295 AAATTTTTATTTTTAAGAAAAGTAATGATTTTTTAAAAGAAAAA-AAAAAGAGAAAATTTAGATT
66 AAACTTTGATTTTTAAGAAAAGTAATGATTTTTTAAAAGAAAAAGAAAAAGAGAAAATTTAAATT
* *
36671359 TTAAAAAATCAAAATATGTTTTTTTAGTCATTTTAAATGAAA
131 TTAAAAAATAAAAATATG-TTTTTTAGTCATTTTAAAGGAAA
36671401 TTTTAAAATT
Statistics
Matches: 153, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
175 34 0.22
176 119 0.78
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (176 bp):
TCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTCTAATCTTTTAAAACTATTTCGAAATA
AAACTTTGATTTTTAAGAAAAGTAATGATTTTTTAAAAGAAAAAGAAAAAGAGAAAATTTAAATT
TTAAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAGTTAG
Found at i:36674150 original size:21 final size:20
Alignment explanation
Indices: 36674112--36674151 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
36674102 AATATTTTAC
*
36674112 ATTTTACCCCAAACCTTTTT
1 ATTTTACCCCAAAACTTTTT
*
36674132 ATTTTCCCCCAAAAACTTTT
1 ATTTTACCCC-AAAACTTTT
36674152 ACTTTCTCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.30, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTTTACCCCAAAACTTTTT
Found at i:36686719 original size:21 final size:21
Alignment explanation
Indices: 36686693--36686733 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36686683 TTTTTAATTT
36686693 TTTTTAAAAAT-TAATATAATA
1 TTTTTAAAAATCTAAT-TAATA
*
36686714 TTTTTAAGAATCTAATTAAT
1 TTTTTAAAAATCTAATTAAT
36686734 TAGATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TTTTTAAAAATCTAATTAATA
Found at i:36693937 original size:4 final size:4
Alignment explanation
Indices: 36693930--36693960 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
36693920 CTACACATAT
*
36693930 ATAG ATAG ATAG ATAG ACAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
36693961 TTAATGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.03, G:0.23, T:0.23
Consensus pattern (4 bp):
ATAG
Found at i:36705965 original size:372 final size:372
Alignment explanation
Indices: 36705275--36706010 Score: 1289
Period size: 372 Copynumber: 2.0 Consensus size: 372
36705265 AAGGGAAGTG
*
36705275 GGAAATGTACCATGCAATTCACAACCCTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
1 GGAAATGAACCATGCAATTCACAACCCTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
* *
36705340 ACTCTGAGGGATTGTTGAAGATACATTTACCATGTCAAGATCAAGAATCTTGAGGTTCAATAACC
66 ACTCTGAGGGATTGTCGAAGATACATTTACCATGTAAAGATCAAGAATCTTGAGGTTCAATAACC
*
36705405 TCTCGGATAAACTTTTCAAACTTGGGTTTCGGAGCTCTAATGGATTCCCAGAGAGATCAAGTATC
131 TCTCGGATAAACTTTTCAAACTTGGGTTTCGGAGCTCTAATCGATTCCCAGAGAGATCAAGTATC
** *
36705470 ACCAGGTTTGAAAGCTGTAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACGAGGAGAGGTC
196 ACCAGGTTTGAAAGCAATAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACCAGGAGAGGTC
*
36705535 CAACCGTGATAGCCTTGTAAGGTTAGCAATTGCAGAAGGGATTTCAGAGCCGTTGAAGTCATTGT
261 CAACCGTGATAGCCTTGTAAGGTTACCAATTGCAGAAGGGATTTCAGAGCCGTTGAAGTCATTGT
36705600 CAC-AAAGGCTGAGCCTTCTAAGGTGATGGAGCTGGAAAACTTCAATA
326 C-CGAAAGGCTGAGCCTTCTAAGGTGATGGAGCTGGAAAACTTCAATA
* *
36705647 GGAAATGAACCATGCAATTCACAAGCGTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
1 GGAAATGAACCATGCAATTCACAACCCTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
*
36705712 ACTCTGAGGGATTGTCGACGATACATTTACCATGTAAAGATCAAG-ATGCTTGAGGTTCAATAAC
66 ACTCTGAGGGATTGTCGAAGATACATTTACCATGTAAAGATCAAGAAT-CTTGAGGTTCAATAAC
* *
36705776 CTCTCGGATAAACTTTTCAAGCTTGGGTTTCGGAGCTCTAATCGATTCCTAGAGAGATCAAGTAT
130 CTCTCGGATAAACTTTTCAAACTTGGGTTTCGGAGCTCTAATCGATTCCCAGAGAGATCAAGTAT
36705841 CACCAGGTTTGAAAGCAATAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACCAGGAGAGGT
195 CACCAGGTTTGAAAGCAATAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACCAGGAGAGGT
*
36705906 CCAACCGTGATAGCCTTGTAAGGTTACCAATTGCAGAAGGGATTTCAGAG-CGATTGAAGTTATT
260 CCAACCGTGATAGCCTTGTAAGGTTACCAATTGCAGAAGGGATTTCAGAGCCG-TTGAAGTCATT
*
36705970 GTCCGAAAGGTTGAGCCTTCTAAGGTGATGGAGCTGGAAAA
324 GTCCGAAAGGCTGAGCCTTCTAAGGTGATGGAGCTGGAAAA
36706011 GGCTGTTGTT
Statistics
Matches: 346, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
371 5 0.01
372 341 0.99
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (372 bp):
GGAAATGAACCATGCAATTCACAACCCTCAAGAGAGAGATATGTTAAAGCAGATAAATTTGCCAA
ACTCTGAGGGATTGTCGAAGATACATTTACCATGTAAAGATCAAGAATCTTGAGGTTCAATAACC
TCTCGGATAAACTTTTCAAACTTGGGTTTCGGAGCTCTAATCGATTCCCAGAGAGATCAAGTATC
ACCAGGTTTGAAAGCAATAGAACTTCATATGGAATTTGACCTGTAAAGCCAGACCAGGAGAGGTC
CAACCGTGATAGCCTTGTAAGGTTACCAATTGCAGAAGGGATTTCAGAGCCGTTGAAGTCATTGT
CCGAAAGGCTGAGCCTTCTAAGGTGATGGAGCTGGAAAACTTCAATA
Found at i:36706437 original size:12 final size:12
Alignment explanation
Indices: 36706420--36706448 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
36706410 AATCAAGTTG
36706420 TGTATATGCGTA
1 TGTATATGCGTA
36706432 TGTATATGCGTA
1 TGTATATGCGTA
36706444 TGTAT
1 TGTAT
36706449 GCATCATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.45
Consensus pattern (12 bp):
TGTATATGCGTA
Found at i:36708821 original size:79 final size:79
Alignment explanation
Indices: 36708729--36708879 Score: 203
Period size: 79 Copynumber: 1.9 Consensus size: 79
36708719 ATGCATAGTT
* * * * ** *
36708729 ATAAATCAAAATCAGTAACAATTAGTCTAACATATTCAGATATTGTGTATTCCTCATCAACAAAG
1 ATAAATCAAAATCAGTAACAATCAATCTAACATAATCAAATATCATATATTCCTCATCAACAAAG
36708794 TAACGTAAAGGGTC
66 TAACGTAAAGGGTC
* * * *
36708808 ATAAATCAGAATCAGTAACAATCAATTTAACATAATCAAATGTCATATATTCTTCATCAACAAAG
1 ATAAATCAAAATCAGTAACAATCAATCTAACATAATCAAATATCATATATTCCTCATCAACAAAG
36708873 TAACGTA
66 TAACGTA
36708880 GAGATGTATC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (79 bp):
ATAAATCAAAATCAGTAACAATCAATCTAACATAATCAAATATCATATATTCCTCATCAACAAAG
TAACGTAAAGGGTC
Found at i:36714650 original size:21 final size:21
Alignment explanation
Indices: 36714624--36714673 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
36714614 GGTCTACAAG
36714624 CCCGTGTGTGAGCTACACACA
1 CCCGTGTGTGAGCTACACACA
*
36714645 CCCGTGTCTGAGCTACACACA
1 CCCGTGTGTGAGCTACACACA
*
36714666 TCCGTGTG
1 CCCGTGTG
36714674 AAGGGGATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.20, C:0.34, G:0.24, T:0.22
Consensus pattern (21 bp):
CCCGTGTGTGAGCTACACACA
Found at i:36721179 original size:86 final size:87
Alignment explanation
Indices: 36721034--36721207 Score: 341
Period size: 86 Copynumber: 2.0 Consensus size: 87
36721024 TCTATGACCA
36721034 TATTTTACCACAATTAATACATAAGTTACTTTAATATTAATTCCTTATATATAGAAAAGT-AAAA
1 TATTTTACCACAATTAATACATAAGTTACTTTAATATTAATTCCTTATATATAGAAAAGTAAAAA
36721098 GGGAAAAGTGAAAATGTGAGAT
66 GGGAAAAGTGAAAATGTGAGAT
36721120 TATTTTACCACAATTAATACATAAGTTACTTTAATATTAATTCCTTATATATAGAAAAGTAAAAA
1 TATTTTACCACAATTAATACATAAGTTACTTTAATATTAATTCCTTATATATAGAAAAGTAAAAA
36721185 GGGAAAAGTGAAAATGTGAGAT
66 GGGAAAAGTGAAAATGTGAGAT
36721207 T
1 T
36721208 TGAACCTTGG
Statistics
Matches: 87, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
86 60 0.69
87 27 0.31
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (87 bp):
TATTTTACCACAATTAATACATAAGTTACTTTAATATTAATTCCTTATATATAGAAAAGTAAAAA
GGGAAAAGTGAAAATGTGAGAT
Found at i:36723791 original size:20 final size:18
Alignment explanation
Indices: 36723750--36723792 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
36723740 TCGATGTGAT
* *
36723750 ATCTGTTAATTGAGTATT
1 ATCTGTTAATTGAATATG
36723768 ATCTGCTTAATTTGAATATG
1 ATCTG-TTAA-TTGAATATG
36723788 ATCTG
1 ATCTG
36723793 AATCTAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 4 0.19
20 12 0.57
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (18 bp):
ATCTGTTAATTGAATATG
Found at i:36727422 original size:30 final size:30
Alignment explanation
Indices: 36727386--36727446 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
36727376 ACGGGCACGG
*
36727386 ACACGATCGTGTGTCCCTATTTTGAATGTT
1 ACACGATCGTGTGTCCCTATTTCGAATGTT
*
36727416 ACACGATCGTGTTTCCCTATTTCGAATGTT
1 ACACGATCGTGTGTCCCTATTTCGAATGTT
36727446 A
1 A
36727447 TACGGCTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.39
Consensus pattern (30 bp):
ACACGATCGTGTGTCCCTATTTCGAATGTT
Found at i:36728700 original size:21 final size:21
Alignment explanation
Indices: 36728674--36728728 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
36728664 AACAGCGGTG
*
36728674 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
36728695 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
36728716 GTGGTGAGATTAG
1 GCGGTGAGATTAG
36728729 AAACAATGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.07, G:0.40, T:0.31
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTGTA
Found at i:36729042 original size:22 final size:22
Alignment explanation
Indices: 36728991--36729042 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
36728981 TTTTATAGTT
*
36728991 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
36729014 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
36729036 ATAATAA
1 ATAATAA
36729043 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:36738449 original size:21 final size:22
Alignment explanation
Indices: 36738398--36738449 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
36738388 TTATATATAT
* *
36738398 AATATTAATTATTTTTTTAAGA
1 AATATTATTTATTTTTGTAAGA
* *
36738420 AA-ATAATTTCTTTTTGTAA-A
1 AATATTATTTATTTTTGTAAGA
36738440 AATATTATTT
1 AATATTATTT
36738450 TTATTTCCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 3 0.12
21 19 0.79
22 2 0.08
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
AATATTATTTATTTTTGTAAGA
Found at i:36738893 original size:26 final size:27
Alignment explanation
Indices: 36738849--36738909 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
36738839 ATTATATATT
36738849 AAATATATTTTTTTAATTTTTAATCAA
1 AAATATATTTTTTTAATTTTTAATCAA
36738876 AAATATATTTTTTT-ATTTTTAATCAA
1 AAATATATTTTTTTAATTTTTAATCAA
*
36738902 ATATATAT
1 AAATATAT
36738910 ATAATTTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 19 0.58
27 14 0.42
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (27 bp):
AAATATATTTTTTTAATTTTTAATCAA
Found at i:36738917 original size:27 final size:26
Alignment explanation
Indices: 36738849--36738925 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 26
36738839 ATTATATATT
**
36738849 AAATATATTTTTTTAATTTTTAATCAA
1 AAATATATTAATTT-ATTTTTAATCAA
**
36738876 AAATATATTTTTTTATTTTTAATCAA
1 AAATATATTAATTTATTTTTAATCAA
* *
36738902 ATATATATATAATTTATATTTAAT
1 AAATATAT-TAATTTATTTTTAAT
36738926 ATGGGTCGGG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 19 0.42
27 26 0.58
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (26 bp):
AAATATATTAATTTATTTTTAATCAA
Found at i:36746292 original size:15 final size:15
Alignment explanation
Indices: 36746272--36746302 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36746262 GCCATTACAC
36746272 TCAAATAGGGGTTAA
1 TCAAATAGGGGTTAA
36746287 TCAAATAGGGGTTAA
1 TCAAATAGGGGTTAA
36746302 T
1 T
36746303 TGTCACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29
Consensus pattern (15 bp):
TCAAATAGGGGTTAA
Found at i:36748712 original size:22 final size:21
Alignment explanation
Indices: 36748682--36748747 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 21
36748672 TAATTACACG
36748682 TTTAGAAATAATTATAATTTAA
1 TTTA-AAATAATTATAATTTAA
*
36748704 TTTACAAATATTACTTAAAATTTTTAA
1 TTTA-AAATA--A-TTATAA--TTTAA
36748731 -TTAAAATAATTATAATT
1 TTTAAAATAATTATAATT
36748748 GAAGTAAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
20 2 0.06
22 14 0.39
23 1 0.03
24 1 0.03
25 10 0.28
26 3 0.08
27 5 0.14
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (21 bp):
TTTAAAATAATTATAATTTAA
Found at i:36749210 original size:31 final size:29
Alignment explanation
Indices: 36749172--36749241 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
36749162 ACTATTAAAA
* *
36749172 TAGTCACTTTTGTTTGTCTAAGGTTACATTT
1 TAGTCACTTATGTTTGAC--AGGTTACATTT
* *
36749203 TAGTCACTTATGTTTGACATGTTACGTTT
1 TAGTCACTTATGTTTGACAGGTTACATTT
36749232 TAGTCACTTA
1 TAGTCACTTA
36749242 CGCTATCCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.54
31 16 0.46
ACGTcount: A:0.21, C:0.14, G:0.16, T:0.49
Consensus pattern (29 bp):
TAGTCACTTATGTTTGACAGGTTACATTT
Found at i:36749548 original size:20 final size:20
Alignment explanation
Indices: 36749527--36749563 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
36749517 TTCTTTTTCT
36749527 TTTTCTTTTTCT-TCTTCCC
1 TTTTCTTTTTCTCTCTTCCC
*
36749546 TTTTGTTTTTCTCTCTTC
1 TTTTCTTTTTCTCTCTTC
36749564 TCATATTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.00, C:0.27, G:0.03, T:0.70
Consensus pattern (20 bp):
TTTTCTTTTTCTCTCTTCCC
Found at i:36750705 original size:15 final size:15
Alignment explanation
Indices: 36750685--36750713 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36750675 TACTCTAATA
36750685 AAAATTCGTTCAAAT
1 AAAATTCGTTCAAAT
36750700 AAAATTCGTTCAAA
1 AAAATTCGTTCAAA
36750714 GTACACATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (15 bp):
AAAATTCGTTCAAAT
Found at i:36753489 original size:23 final size:23
Alignment explanation
Indices: 36753445--36753489 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
36753435 TATTTAAGTA
*
36753445 TCAAAATAAAATTGAAGTCAAAT
1 TCAAAATAAAATTGAAGACAAAT
*
36753468 TCAAATATTAAATTG-AGACAAA
1 TCAAA-ATAAAATTGAAGACAAA
36753490 AAAAAAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.27
Consensus pattern (23 bp):
TCAAAATAAAATTGAAGACAAAT
Found at i:36755957 original size:20 final size:20
Alignment explanation
Indices: 36755921--36755958 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36755911 ATGAGATTTG
*
36755921 TAAAATAATATAAATATGTT
1 TAAAATAATAAAAATATGTT
36755941 TAAAA-AATAAAATATATG
1 TAAAATAATAAAA-ATATG
36755959 CCATAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
TAAAATAATAAAAATATGTT
Found at i:36756361 original size:14 final size:14
Alignment explanation
Indices: 36756338--36756372 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
36756328 ATTAAAAGAT
36756338 TTAATTATGTT-AA
1 TTAATTATGTTAAA
36756351 TTAACTTATGTTAAA
1 TTAA-TTATGTTAAA
36756366 TTAATTA
1 TTAATTA
36756373 ATCTAAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.20
14 10 0.50
15 6 0.30
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (14 bp):
TTAATTATGTTAAA
Found at i:36757114 original size:4 final size:4
Alignment explanation
Indices: 36757105--36757249 Score: 263
Period size: 4 Copynumber: 36.2 Consensus size: 4
36757095 TGATTTCTTT
* * *
36757105 TGTA TGTA TGTA TGTA TGTG TGTG TGTG TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
36757153 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
36757201 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
36757249 T
1 T
36757250 TGGCATGAAA
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
4 139 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:36757994 original size:16 final size:16
Alignment explanation
Indices: 36757973--36758011 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
36757963 GAAATTACTG
36757973 ATTACAGCTCTA-TTC
1 ATTACAGCTCTATTTC
36757988 AATTACAGCTCTATTTC
1 -ATTACAGCTCTATTTC
36758005 ATTACAG
1 ATTACAG
36758012 TGAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTTC
Found at i:36759329 original size:97 final size:94
Alignment explanation
Indices: 36759188--36759458 Score: 352
Period size: 97 Copynumber: 2.9 Consensus size: 94
36759178 GCTTCTTAAT
* * *
36759188 TAAATTAATTATAAAATTTTCAAAATTAGATTAGGGTTTCGTGTTTATGGTTTTTAAGGAAAAAT
1 TAAATTAATTAT-AAATTTTAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAAAT
*
36759253 TAAATAAATT-AGAGTTTAGGATTACTTGAG
65 AAAATAAATTAAG-GTTTAGGATTACTTGAG
* * * *
36759283 TAAATTGATTATAAATTTTTTTAAAAATTAGATTAAGGTTTAGTGTTAAGGGTTTTAAAGGAAAA
1 TAAATTAATTATAAA---TTTTAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAA
*
36759348 ATAAAAT-AATTAAGGTTTAGGGTTACTTGAG
63 ATAAAATAAATTAAGGTTTAGGATTACTTGAG
* *
36759379 TAAATTAATTATAAA--TTAAAAAATAGATTAGGGTTTAGTATTTAGGGTTTTTAAGGAAAAAAT
1 TAAATTAATTATAAATTTTAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGG-AAAAAT
*
36759442 CAAATAAATTAAGGTTT
65 AAAATAAATTAAGGTTT
36759459 GGGGTTTAGG
Statistics
Matches: 154, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
91 36 0.23
92 10 0.06
93 11 0.07
94 3 0.02
95 11 0.07
96 34 0.22
97 49 0.32
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.39
Consensus pattern (94 bp):
TAAATTAATTATAAATTTTAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAAATA
AAATAAATTAAGGTTTAGGATTACTTGAG
Found at i:36759742 original size:126 final size:126
Alignment explanation
Indices: 36759517--36759791 Score: 442
Period size: 126 Copynumber: 2.2 Consensus size: 126
36759507 TCACGTGAAA
*
36759517 GCTCTTTTGCTACAGTAGCTCCTCAAAAAATAATTTTAAGAAGACGTTCCTGAGCAAATAGTGTC
1 GCTCTTTTGCTACAGTAGTTCCTCAAAAAATAATTTTAAGAAGACGTTCCTGAGCAAATAGTGTC
* *
36759582 AAAAATGCTTTAAGCAGGATGTTTTATCAGCAAAAGTACTGAAAGAAGCTCCCACATGGAC
66 AAAAATGCTTTAAGCAGGATGCTTTATCAGCAAAAGTACTGAAAGAAACTCCCACATGGAC
* * * * *
36759643 GCTCTTTTGCTACAGTAGTTCCTGAAAAGATAATTTTGAGAAGATGTTTCTGAGCAAATAGTGTC
1 GCTCTTTTGCTACAGTAGTTCCTCAAAAAATAATTTTAAGAAGACGTTCCTGAGCAAATAGTGTC
* * *
36759708 AAAAATGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGAAACTCCCACGTGGAT
66 AAAAATGCTTTAAGCAGGATGCTTTATCAGCAAAAGTACTGAAAGAAACTCCCACATGGAC
*
36759769 GCTCTTTTGTTACAGTAGTTCCT
1 GCTCTTTTGCTACAGTAGTTCCT
36759792 ATTTGGCCTG
Statistics
Matches: 137, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 137 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (126 bp):
GCTCTTTTGCTACAGTAGTTCCTCAAAAAATAATTTTAAGAAGACGTTCCTGAGCAAATAGTGTC
AAAAATGCTTTAAGCAGGATGCTTTATCAGCAAAAGTACTGAAAGAAACTCCCACATGGAC
Found at i:36762983 original size:78 final size:79
Alignment explanation
Indices: 36762879--36763036 Score: 309
Period size: 78 Copynumber: 2.0 Consensus size: 79
36762869 AAAATGTTTG
36762879 TACAAATATATTAAAATAAAAATCAATATCTGTGGCCGTCGGATTCAGTGCCACATGGAGGTCGT
1 TACAAATATATTAAAATAAAAATCAATATCTGTGGCCGTCGGATTCAGTGCCACATGGAGGTCGT
36762944 CAACGGTTATGCGC
66 CAACGGTTATGCGC
36762958 TACAAATATA-TAAAATAAAAATCAATATCTGTGGCCGTCGGATTCAGTGCCACATGGAGGTCGT
1 TACAAATATATTAAAATAAAAATCAATATCTGTGGCCGTCGGATTCAGTGCCACATGGAGGTCGT
36763022 CAACGGTTATGCGC
66 CAACGGTTATGCGC
36763036 T
1 T
36763037 GGATTCCTCC
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 69 0.87
79 10 0.13
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (79 bp):
TACAAATATATTAAAATAAAAATCAATATCTGTGGCCGTCGGATTCAGTGCCACATGGAGGTCGT
CAACGGTTATGCGC
Found at i:36764930 original size:20 final size:20
Alignment explanation
Indices: 36764874--36764932 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 20
36764864 TTTGCCGATT
*
36764874 AGGCACTTTATGTGTCGTTTC
1 AGGCAC-TTATGTGTCGTTAC
**
36764895 AGGCACCTCGTGTGTCGTTAC
1 AGGCA-CTTATGTGTCGTTAC
36764916 AGGCACTTATGTGTCGT
1 AGGCACTTATGTGTCGT
36764933 ATACTGATCA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 10 0.31
21 21 0.66
22 1 0.03
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.36
Consensus pattern (20 bp):
AGGCACTTATGTGTCGTTAC
Found at i:36767006 original size:14 final size:13
Alignment explanation
Indices: 36766973--36767003 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36766963 TGAAATTTTT
*
36766973 ATAATTTTAAAAA
1 ATAAATTTAAAAA
36766986 ATAAATTTAAAAA
1 ATAAATTTAAAAA
36766999 ATAAA
1 ATAAA
36767004 ATTAGAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAAATTTAAAAA
Found at i:36768616 original size:24 final size:24
Alignment explanation
Indices: 36768588--36768639 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
36768578 TTTCTAGAAG
*
36768588 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAGCATAATAT
*
36768612 ATTTAGTATTTATTAGCATAATTT
1 ATTTAGTATTTATTAGCATAATAT
36768636 ATTT
1 ATTT
36768640 GACCTATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.56
Consensus pattern (24 bp):
ATTTAGTATTTATTAGCATAATAT
Found at i:36772753 original size:6 final size:6
Alignment explanation
Indices: 36772742--36772767 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
36772732 CATGGCCTGT
36772742 CAACAG CAACAG CAACAG CAACAG CA
1 CAACAG CAACAG CAACAG CAACAG CA
36772768 GTAGCAGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.35, G:0.15, T:0.00
Consensus pattern (6 bp):
CAACAG
Found at i:36778168 original size:12 final size:12
Alignment explanation
Indices: 36778142--36778182 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
36778132 GTATTTTACT
*
36778142 AAAATAATACC-
1 AAAAAAATACCA
36778153 AAAAAAATACCA
1 AAAAAAATACCA
36778165 AAAAAATATA-CA
1 AAAAAA-ATACCA
36778177 AAAAAA
1 AAAAAA
36778183 TTTATTTACC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 10 0.37
12 14 0.52
13 3 0.11
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAATACCA
Found at i:36778169 original size:10 final size:11
Alignment explanation
Indices: 36778142--36778183 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
36778132 GTATTTTACT
*
36778142 AAAATAATACC
1 AAAAAAATACC
36778153 AAAAAAATACC
1 AAAAAAATACC
*
36778164 AAAAAAATATAC
1 AAAAAAATA-CC
36778176 AAAAAAAT
1 AAAAAAAT
36778184 TTATTTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.14
Consensus pattern (11 bp):
AAAAAAATACC
Found at i:36778557 original size:25 final size:25
Alignment explanation
Indices: 36778529--36778579 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
36778519 GTTGTTTTAG
36778529 TACATTATATTTGAAATGTATTAAT
1 TACATTATATTTGAAATGTATTAAT
36778554 TACATTATATTTGAAATGTATTAAT
1 TACATTATATTTGAAATGTATTAAT
36778579 T
1 T
36778580 TATTGTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.49
Consensus pattern (25 bp):
TACATTATATTTGAAATGTATTAAT
Found at i:36778691 original size:178 final size:177
Alignment explanation
Indices: 36778378--36778728 Score: 469
Period size: 178 Copynumber: 2.0 Consensus size: 177
36778368 ATTTTAGTAT
* *
36778378 ATTATATTTGAAATATATTCATTTAGTATGTTTTTTAAATAAATTTAAAAAAATCCTTATTTCAG
1 ATTATATTTGAAATATATTAATTTAGTATGTTTTTTAAATAAATTTAAAAAAACCCTTATTTCAG
* * * *
36778443 CCCTTTGTTTGTATCTTTTTTCCAAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTT
66 CCCTCTGTTCGTATCTTTTTTCCAAATTTTATTACTTT--ATAAAAAAATACTATTTTCGTATTT
* *
36778508 TATTATTTTACGTTGTTTTAGTACATTATATTTGAAATGTATTAATTAC
129 TATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTAC
*
36778557 ATTATATTTGAAATGTATTAATTTA-T-TGTATTTTTAAAATAAATTTAGTAAAAAACCCTTATT
1 ATTATATTTGAAATATATTAATTTAGTATGT-TTTTT-AAATAAATTTA--AAAAAACCCTTATT
* * **
36778620 TCGGCCCTCTGTTCGTATTTTTTTTCCCGGATTTTATTA-TTT-TAAAAAAATACTATTTTC-TA
62 TCAGCCCTCTGTTCGTATCTTTTTT-CCAAATTTTATTACTTTATAAAAAAATACTATTTTCGT-
*
36778682 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATT
125 ATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATT
36778729 CATTTAGTGT
Statistics
Matches: 152, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
177 4 0.03
178 66 0.43
179 34 0.22
181 37 0.24
182 11 0.07
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (177 bp):
ATTATATTTGAAATATATTAATTTAGTATGTTTTTTAAATAAATTTAAAAAAACCCTTATTTCAG
CCCTCTGTTCGTATCTTTTTTCCAAATTTTATTACTTTATAAAAAAATACTATTTTCGTATTTTA
TTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTAC
Found at i:36790584 original size:41 final size:40
Alignment explanation
Indices: 36790539--36790686 Score: 154
Period size: 40 Copynumber: 3.7 Consensus size: 40
36790529 AGCGGCATTT
* *
36790539 TTAGCGGCGTTTGAATAAAAAACATCGCTATAGATCGAGCA
1 TTAGCGGCGCTT-AATAAAAAACACCGCTATAGATCGAGCA
* **
36790580 TTAGCGGCGCTTATTAAAAAAGGCCGCTATAGATCGAGCA
1 TTAGCGGCGCTTAATAAAAAACACCGCTATAGATCGAGCA
** * * * *
36790620 TTAGCGGCGCTTTTTCAAAAACGCCGCTATAGGTCGACCA
1 TTAGCGGCGCTTAATAAAAAACACCGCTATAGATCGAGCA
* *
36790660 CTAGCGGCGCCTT-TTAAAAAACACCGC
1 TTAGCGGCG-CTTAATAAAAAACACCGC
36790687 AAAAAAAATT
Statistics
Matches: 93, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
40 79 0.85
41 14 0.15
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCGGCGCTTAATAAAAAACACCGCTATAGATCGAGCA
Found at i:36790609 original size:40 final size:39
Alignment explanation
Indices: 36790554--36790686 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 39
36790544 GGCGTTTGAA
**
36790554 TAAAAAACATCGCTATAGATCGAGCATTAGCGGCGCTTAT
1 TAAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTT-T
*
36790594 TAAAAAAGGCCGCTATAGATCGAGCATTAGCGGCGCTTTT
1 TAAAAAACGCCGCTATAGATCGAGCATTAGCGGCGC-TTT
* * * *
36790634 TCAAAAACGCCGCTATAGGTCGACCACTAGCGGCGCCTTT
1 TAAAAAACGCCGCTATAGATCGAGCATTAGCGGCG-CTTT
*
36790674 TAAAAAACACCGC
1 TAAAAAACGCCGC
36790687 AAAAAAAATT
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
40 78 0.96
41 3 0.04
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (39 bp):
TAAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTT
Found at i:36790761 original size:40 final size:40
Alignment explanation
Indices: 36790715--36790796 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 40
36790705 CGCTTTAGTG
*
36790715 GCATTAGCGGCGCTTTTTAAAAAATGCCACTATAGATCGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
* * *
36790755 GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
36790795 GC
1 GC
36790797 TTTATGGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCGA
Found at i:36790865 original size:21 final size:22
Alignment explanation
Indices: 36790836--36790878 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
36790826 TTTAAGTGTT
*
36790836 GAGATTTAAGATTTAGGGGTTA
1 GAGATTTAAGAGTTAGGGGTTA
*
36790858 GAGA-TTAAGGGTTAGGGGTTA
1 GAGATTTAAGAGTTAGGGGTTA
36790879 AGGGTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (22 bp):
GAGATTTAAGAGTTAGGGGTTA
Found at i:36791055 original size:14 final size:14
Alignment explanation
Indices: 36791031--36791084 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
36791021 TTAATTATCA
36791031 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
* *
36791045 TTGTGGTTTAGGGT
1 TTATAGTTTAGGGT
*
36791059 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
36791073 TTA-AGATTTAGG
1 TTATAG-TTTAGG
36791085 AGTTACTGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
13 2 0.06
14 31 0.94
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:36791119 original size:15 final size:14
Alignment explanation
Indices: 36791099--36791147 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
36791089 ACTGTTTTAA
36791099 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
36791113 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
* *
36791128 GATTTATGGTTTAT
1 GGTTTATGGATTAT
36791142 GGTTTA
1 GGTTTA
36791148 AGGGTTGGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 16 0.55
15 13 0.45
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:36791144 original size:7 final size:7
Alignment explanation
Indices: 36791031--36791147 Score: 56
Period size: 7 Copynumber: 16.4 Consensus size: 7
36791021 TTAATTATCA
*
36791031 TTATAGT
1 TTATGGT
*
36791038 TTAGGGT
1 TTATGGT
*
36791045 TTGTGGT
1 TTATGGT
*
36791052 TTAGGGT
1 TTATGGT
* *
36791059 ATATAGT
1 TTATGGT
*
36791066 TTAGGGT
1 TTATGGT
* *
36791073 TTAAGAT
1 TTATGGT
*
36791080 TTA-GGAG
1 TTATGG-T
*
36791087 TTACTGTT
1 TTA-TGGT
*
36791095 TTAAGGT
1 TTATGGT
*
36791102 TTATGGA
1 TTATGGT
36791109 TTATGGGT
1 TTAT-GGT
* *
36791117 TTAGGGA
1 TTATGGT
*
36791124 TTATGAT
1 TTATGGT
36791131 TTATGGT
1 TTATGGT
36791138 TTATGGT
1 TTATGGT
36791145 TTA
1 TTA
36791148 AGGGTTGGGG
Statistics
Matches: 77, Mismatches: 29, Indels: 8
0.68 0.25 0.07
Matches are distributed among these distances:
6 1 0.01
7 67 0.87
8 8 0.10
9 1 0.01
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:36791159 original size:14 final size:15
Alignment explanation
Indices: 36791142--36791178 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
36791132 TATGGTTTAT
*
36791142 GGTTTAAGGG-TTGG
1 GGTTTAAGGGCTAGG
36791156 GGTTTAAGGGCTAGG
1 GGTTTAAGGGCTAGG
36791171 GGTTTAAG
1 GGTTTAAG
36791179 ATTTATGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.19, C:0.03, G:0.46, T:0.32
Consensus pattern (15 bp):
GGTTTAAGGGCTAGG
Found at i:36791199 original size:29 final size:28
Alignment explanation
Indices: 36791101--36791201 Score: 69
Period size: 29 Copynumber: 3.5 Consensus size: 28
36791091 TGTTTTAAGG
* * *
36791101 TTTATGGATTATGGGTTTAGGGATTATGA
1 TTTATGGTTTAGGGGTTTA-AGATTATGA
* * ** *
36791130 TTTATGGTTTA-TGGTTTAAGGGTTGGGG
1 TTTATGGTTTAGGGGTTTAA-GATTATGA
* **
36791158 TTTAAGGGCTAGGGGTTTAAGATTTATGA
1 TTTATGGTTTAGGGGTTTAAGA-TTATGA
36791187 TTTATGGTTTAGGGG
1 TTTATGGTTTAGGGG
36791202 ATAAAGGATA
Statistics
Matches: 51, Mismatches: 18, Indels: 6
0.68 0.24 0.08
Matches are distributed among these distances:
28 19 0.37
29 32 0.63
ACGTcount: A:0.21, C:0.01, G:0.35, T:0.44
Consensus pattern (28 bp):
TTTATGGTTTAGGGGTTTAAGATTATGA
Found at i:36792268 original size:22 final size:22
Alignment explanation
Indices: 36792223--36792287 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 22
36792213 AACTAATCCT
36792223 CTCTCAAATTTC-CTCTAAATTTC
1 CTCTCAAATTTCTCTC-AAA-TTC
36792246 CTCTC-AATTTGCTCTCAAATTC
1 CTCTCAAATTT-CTCTCAAATTC
36792268 CT-TCCAAATTTCTCTCAAAT
1 CTCT-CAAATTTCTCTCAAAT
36792288 CCATATTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
21 1 0.03
22 20 0.53
23 14 0.37
24 3 0.08
ACGTcount: A:0.26, C:0.31, G:0.02, T:0.42
Consensus pattern (22 bp):
CTCTCAAATTTCTCTCAAATTC
Found at i:36792286 original size:11 final size:11
Alignment explanation
Indices: 36792222--36792287 Score: 66
Period size: 11 Copynumber: 5.9 Consensus size: 11
36792212 AAACTAATCC
36792222 TCTCTCAAATT
1 TCTCTCAAATT
36792233 TC-CTCTAAATT
1 TCTCTC-AAATT
36792244 TCCTCTC-AATT
1 T-CTCTCAAATT
36792255 TGCTCTCAAATT
1 T-CTCTCAAATT
*
36792267 CCT-TCCAAATT
1 TCTCT-CAAATT
36792278 TCTCTCAAAT
1 TCTCTCAAAT
36792288 CCATATTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
10 4 0.09
11 33 0.72
12 6 0.13
13 3 0.07
ACGTcount: A:0.26, C:0.30, G:0.02, T:0.42
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:36794170 original size:18 final size:18
Alignment explanation
Indices: 36794143--36794182 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
36794133 CAGGTGAGTT
*
36794143 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
36794161 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
36794179 TCCT
1 TCCT
36794183 TTTCCGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:36798205 original size:125 final size:125
Alignment explanation
Indices: 36797828--36798192 Score: 597
Period size: 125 Copynumber: 2.9 Consensus size: 125
36797818 CCCAAATATG
* *
36797828 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGCTTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAAGGCGCGCTTTCACAAATTCTTCTCAAATAGCATCCTGC
36797893 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * *
36797953 CTACTGTAGCAAAAGCGCGTCCAC-TAGCGCGTGCTTTCACAAATTCTTCTCAAATAGCACCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAAG-GCGCGCTTTCACAAATTCTTCTCAAATAGCATCCTG
*
36798017 CTAGAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * * * *
36798078 CTATTGTAGCAAAAGCGCGTCCACGAAGGCGCGATTTCACAAATTCTTATCAAACAGCATTCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAAGGCGCGCTTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
36798143 TAGAAGCGATTTTATACTATTTGATCAGAAACGTCAACTCAAAATTATTT
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT
36798193 ATTTTAAGAC
Statistics
Matches: 221, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
124 1 0.00
125 218 0.99
126 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAAGGCGCGCTTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
Found at i:36798970 original size:58 final size:59
Alignment explanation
Indices: 36798867--36798985 Score: 154
Period size: 58 Copynumber: 2.0 Consensus size: 59
36798857 TATCAGAATC
* * *
36798867 AAGTGTATTTTAAGCAGTATCTGATTTTCTACTGTAAACTCGAAGGTTCTT-TGTAGTTT
1 AAGTGTATATTAAGCAATATCTGATTTTCTACTGTAAACTCGAAGGTT-TTATGGAGTTT
* *
36798926 AAGTGTATATTAAGCAAT-TTTGATATTTC-GCTGTAAACTCGAAGGTTTTATGGAGTTT
1 AAGTGTATATTAAGCAATATCTGAT-TTTCTACTGTAAACTCGAAGGTTTTATGGAGTTT
36798984 AA
1 AA
36798986 CTAATTTCAA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
57 2 0.04
58 31 0.58
59 20 0.38
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (59 bp):
AAGTGTATATTAAGCAATATCTGATTTTCTACTGTAAACTCGAAGGTTTTATGGAGTTT
Found at i:36801224 original size:9 final size:9
Alignment explanation
Indices: 36801206--36801261 Score: 67
Period size: 9 Copynumber: 6.2 Consensus size: 9
36801196 TTATTTTTGG
*
36801206 TTAACTGAA
1 TTAACCGAA
*
36801215 TTAATCGAA
1 TTAACCGAA
*
36801224 TTACCCGAA
1 TTAACCGAA
*
36801233 TTACCCGAA
1 TTAACCGAA
36801242 TTAACCGAA
1 TTAACCGAA
*
36801251 TTAACAGAA
1 TTAACCGAA
36801260 TT
1 TT
36801262 GAATCACTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.29
Consensus pattern (9 bp):
TTAACCGAA
Found at i:36802007 original size:23 final size:23
Alignment explanation
Indices: 36801973--36802039 Score: 91
Period size: 23 Copynumber: 2.9 Consensus size: 23
36801963 ACCCATATGA
36801973 CTGCAAATTGAAGCGTTTAAA-TG
1 CTGCAAATTGAAGCG-TTAAAGTG
* *
36801996 CTGTAAATTGAAGTGTTAAAGTG
1 CTGCAAATTGAAGCGTTAAAGTG
*
36802019 CTGCAAATTGAAGTGTTAAAG
1 CTGCAAATTGAAGCGTTAAAG
36802040 GGCAAACATC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
22 5 0.12
23 35 0.88
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (23 bp):
CTGCAAATTGAAGCGTTAAAGTG
Found at i:36802841 original size:43 final size:43
Alignment explanation
Indices: 36802785--36802897 Score: 165
Period size: 43 Copynumber: 2.6 Consensus size: 43
36802775 TTTTCATGAC
*
36802785 CTTTAGC-AGCGTTTGTAGGAAAAGCGCCGTTAAAGGTCATGTT
1 CTTTAGCGA-CGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGTT
*
36802828 CTTTAGCGACGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGTT
1 CTTTAGCGACGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGTT
* * *
36802871 CTTTAGCGGCATTTTTAGGAAAAGCGC
1 CTTTAGCGACGTTTGTAGGAAAAGCGC
36802898 AACTCAATTA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 62 0.98
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
CTTTAGCGACGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGTT
Found at i:36805114 original size:18 final size:17
Alignment explanation
Indices: 36805085--36805118 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
36805075 ATATTTTCAA
36805085 TTTAAATTATAATTATT
1 TTTAAATTATAATTATT
36805102 TTTAAATTTATAATTAT
1 TTTAAA-TTATAATTAT
36805119 CATAATTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTAAATTATAATTATT
Found at i:36805777 original size:36 final size:34
Alignment explanation
Indices: 36805719--36805786 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 34
36805709 CAGTAAAATA
* *
36805719 TTTTCCGTAAAATGATTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATAATTTCTGGAAAATATTTTAC
*
36805753 TTTTCTGTCAAAATAATTTACTGGAAAATATTTT
1 TTTTCCGT-AAAATAATTT-CTGGAAAATATTTT
36805787 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 7 0.24
35 9 0.31
36 13 0.45
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (34 bp):
TTTTCCGTAAAATAATTTCTGGAAAATATTTTAC
Found at i:36808677 original size:33 final size:33
Alignment explanation
Indices: 36808640--36808705 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
36808630 TACATAAGTA
36808640 AGAAAAAAAAAGAGATTAAATCACTATTTGGGG
1 AGAAAAAAAAAGAGATTAAATCACTATTTGGGG
36808673 AGAAAAAAAAAGAGATTAAATCACTATTTGGGG
1 AGAAAAAAAAAGAGATTAAATCACTATTTGGGG
36808706 CCTAAAGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.52, C:0.06, G:0.21, T:0.21
Consensus pattern (33 bp):
AGAAAAAAAAAGAGATTAAATCACTATTTGGGG
Found at i:36808983 original size:31 final size:30
Alignment explanation
Indices: 36808948--36809035 Score: 76
Period size: 31 Copynumber: 3.0 Consensus size: 30
36808938 CTAATGTGAG
36808948 AAAAATTGTCAAGTTCAGGGCCTAACTTGGA
1 AAAAATTG-CAAGTTCAGGGCCTAACTTGGA
* * * * *
36808979 AAAAA----AAGTTAAGGTCCCAATTTGGG
1 AAAAATTGCAAGTTCAGGGCCTAACTTGGA
*
36809005 AACAATTGCCAAGTTCAGGGCCTAACTTGGA
1 AAAAATTG-CAAGTTCAGGGCCTAACTTGGA
36809036 CAAACAAAAA
Statistics
Matches: 41, Mismatches: 11, Indels: 10
0.66 0.18 0.16
Matches are distributed among these distances:
26 20 0.49
31 21 0.51
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (30 bp):
AAAAATTGCAAGTTCAGGGCCTAACTTGGA
Found at i:36808988 original size:26 final size:26
Alignment explanation
Indices: 36808958--36809052 Score: 64
Period size: 31 Copynumber: 3.3 Consensus size: 26
36808948 AAAAATTGTC
36808958 AAGTTCAGGGCCTAACTTGGAAAAAA
1 AAGTTCAGGGCCTAACTTGGAAAAAA
* * * * **
36808984 AAGTTAAGGTCCCAATTTGGGAACAATTGCC
1 AAGTTCAGGGCCTAACTT-GGAA-AA---AA
36809015 AAGTTCAGGGCCTAACTTGGACAAACAAA
1 AAGTTCAGGGCCTAACTTGG--AAA-AAA
36809044 AAGTTCAGG
1 AAGTTCAGG
36809053 CTCCAATATG
Statistics
Matches: 49, Mismatches: 12, Indels: 13
0.66 0.16 0.18
Matches are distributed among these distances:
26 14 0.29
27 4 0.08
28 2 0.04
29 9 0.18
30 2 0.04
31 15 0.31
32 3 0.06
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (26 bp):
AAGTTCAGGGCCTAACTTGGAAAAAA
Found at i:36809080 original size:60 final size:57
Alignment explanation
Indices: 36808909--36809081 Score: 172
Period size: 60 Copynumber: 2.9 Consensus size: 57
36808899 TTTTCAAAGA
* * *
36808909 CTAACTTGGACAAAAAAAAATTGCAAGTCCTAATGTGAGAAAAATTG-TCAAGTTCAGGGC
1 CTAACTTGGACAAAAAAAAGTT-CAGGTCC-AATATGA-AAAAATTGCT-AAGTTCAGGGC
* * * * *
36808969 CTAACTTGG--AAAAAAAAGTTAAGGTCCCAATTTGGGAACAATTGCCAAGTTCAGGGC
1 CTAACTTGGACAAAAAAAAGTTCAGGT-CCAATAT-GAAAAAATTGCTAAGTTCAGGGC
36809026 CTAACTTGGACAAACAAAAAGTTCAGGCTCCAATATGAAAAAAGTTGCTAAGTTCA
1 CTAACTTGGACAAA-AAAAAGTTCAGG-TCCAATATGAAAAAA-TTGCTAAGTTCA
36809082 AGCCCCAAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
57 34 0.37
58 13 0.14
59 8 0.09
60 37 0.40
61 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (57 bp):
CTAACTTGGACAAAAAAAAGTTCAGGTCCAATATGAAAAAATTGCTAAGTTCAGGGC
Found at i:36809978 original size:39 final size:40
Alignment explanation
Indices: 36809925--36810011 Score: 115
Period size: 39 Copynumber: 2.2 Consensus size: 40
36809915 ATGTGTCAGA
* * *
36809925 AAATCGGGTCCATGTCAGCGCGA-TTACTTACGTGGCAA-C
1 AAATCGCGTCCATGTAAGCGCGATTTACTGACGTGG-AAGC
*
36809964 AAATCGCGTCCATGTAAGCGCGATTTGCTGACGTGGAAGC
1 AAATCGCGTCCATGTAAGCGCGATTTACTGACGTGGAAGC
36810004 AAATCGCG
1 AAATCGCG
36810012 CTTACGTGGA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 23 0.55
40 19 0.45
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
AAATCGCGTCCATGTAAGCGCGATTTACTGACGTGGAAGC
Found at i:36813765 original size:19 final size:17
Alignment explanation
Indices: 36813741--36813784 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
36813731 CAATGCATCA
*
36813741 AATAATTATGCATATTACC
1 AATAATAATGCA-ATT-CC
*
36813760 AATAATAATTCAATTCC
1 AATAATAATGCAATTCC
36813777 AATAATAA
1 AATAATAA
36813785 AACACACATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 3 0.13
19 10 0.43
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (17 bp):
AATAATAATGCAATTCC
Found at i:36828728 original size:19 final size:20
Alignment explanation
Indices: 36828687--36828728 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
36828677 TTTAACATTT
**
36828687 ATAATATATTTATAATTGTA
1 ATAATATATTTATAATTAAA
*
36828707 ATAA-ATATTTATTATTAAA
1 ATAATATATTTATAATTAAA
36828726 ATA
1 ATA
36828729 TTAATATTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
ATAATATATTTATAATTAAA
Found at i:36829277 original size:73 final size:73
Alignment explanation
Indices: 36829193--36829369 Score: 248
Period size: 73 Copynumber: 2.4 Consensus size: 73
36829183 CCTCTCCTAA
* *
36829193 TCATTTTTGTCTTTGCTATGCAAGGG-ATCTCACTATTCATTCTTGGTTGCTTTTGCCAGTGAAT
1 TCATTTTTGTCTTTGCTATGC-AGGGAATCTCACTATTCATTCTTGGTTGCATTTGCCAGGGAAT
*
36829257 CACTCTTGT
65 CACTCCTGT
* * * *
36829266 TCATTTCTGTCTTTGCTCTGCAGGGAATCTCACTATTCATTTTTGGTTGCATTTGGCAGGGAATC
1 TCATTTTTGTCTTTGCTATGCAGGGAATCTCACTATTCATTCTTGGTTGCATTTGCCAGGGAATC
36829331 ACTCCTGT
66 ACTCCTGT
* * *
36829339 TCATTTTTGTCTTTGCTCTGTAGAGAATCTC
1 TCATTTTTGTCTTTGCTATGCAGGGAATCTC
36829370 CCTTGTTCAT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
72 4 0.04
73 89 0.96
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (73 bp):
TCATTTTTGTCTTTGCTATGCAGGGAATCTCACTATTCATTCTTGGTTGCATTTGCCAGGGAATC
ACTCCTGT
Found at i:36829294 original size:37 final size:36
Alignment explanation
Indices: 36829253--36829379 Score: 105
Period size: 37 Copynumber: 3.5 Consensus size: 36
36829243 TTTTGCCAGT
36829253 GAATCACTCTTGTTCATTTCTGTCTTTGCTCTGCAGG
1 GAATCACTCTTGTTCATTT-TGTCTTTGCTCTGCAGG
* * * ** *
36829290 GAATCTCAC-TATTCATTTT-TGGTTGCATTTGGCAGG
1 GAATCACTCTTGTTCATTTTGTCTTTGC-TCT-GCAGG
* * *
36829326 GAATCACTCCTGTTCATTTTTGTCTTTGCTCTGTAGA
1 GAATCACTCTTGTTCA-TTTTGTCTTTGCTCTGCAGG
* *
36829363 GAATCTCCCTTGTTCAT
1 GAATCACTCTTGTTCAT
36829380 CTTTTGTTTT
Statistics
Matches: 68, Mismatches: 17, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
34 5 0.07
35 3 0.04
36 21 0.31
37 28 0.41
38 6 0.09
39 5 0.07
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (36 bp):
GAATCACTCTTGTTCATTTTGTCTTTGCTCTGCAGG
Found at i:36829325 original size:36 final size:35
Alignment explanation
Indices: 36829215--36829347 Score: 92
Period size: 37 Copynumber: 3.7 Consensus size: 35
36829205 TTGCTATGCA
* *
36829215 AGGG-ATCTCACTATTCATTCTTGGTTGCTTTTGCC
1 AGGGAATCTCACTATTCATTTTTGGTTGC-TTTGGC
* * * * ** *
36829250 AGTGAATCACTCTTGTTCATTTCTGTCTTTGCTCT-GC
1 AGGGAATCTCAC-TATTCATTT-T-TGGTTGCTTTGGC
36829287 AGGGAATCTCACTATTCATTTTTGGTTGCATTTGGC
1 AGGGAATCTCACTATTCATTTTTGGTTGC-TTTGGC
*
36829323 AGGGAATCACTC-CTGTTCATTTTTG
1 AGGGAAT--CTCACTATTCATTTTTG
36829348 TCTTTGCTCT
Statistics
Matches: 73, Mismatches: 17, Indels: 14
0.70 0.16 0.13
Matches are distributed among these distances:
34 5 0.07
35 6 0.08
36 22 0.30
37 29 0.40
38 6 0.08
39 5 0.07
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.43
Consensus pattern (35 bp):
AGGGAATCTCACTATTCATTTTTGGTTGCTTTGGC
Found at i:36841825 original size:21 final size:24
Alignment explanation
Indices: 36841785--36841827 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
36841775 GAGAGGTCCA
36841785 TTCTACTTAAAGTAGAATATTATT
1 TTCTACTTAAAGTAGAATATTATT
36841809 TTCTA-TTAAA-TA-AATATTA
1 TTCTACTTAAAGTAGAATATTA
36841828 CTTGCGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 5 0.26
24 5 0.26
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.47
Consensus pattern (24 bp):
TTCTACTTAAAGTAGAATATTATT
Found at i:36843351 original size:21 final size:20
Alignment explanation
Indices: 36843326--36843375 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
36843316 TTTAACAACA
36843326 ATATTACAAAAT-ATATAATT
1 ATATTACAAAATAATA-AATT
*
36843346 AGTATTAAAAAATAATAAATT
1 A-TATTACAAAATAATAAATT
36843367 AT-TTACAAA
1 ATATTACAAA
36843376 TAGAAAAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 6 0.23
20 2 0.08
21 15 0.58
22 3 0.12
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (20 bp):
ATATTACAAAATAATAAATT
Found at i:36848868 original size:28 final size:27
Alignment explanation
Indices: 36848809--36848868 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
36848799 ATTAAAAAAA
36848809 TAAAAAATTGATTTCACTATTTTCACT
1 TAAAAAATTGATTTCACTATTTTCACT
* * *
36848836 AAAAAAATTGTTTTTCA-TAATTTTCAGT
1 TAAAAAATTG-ATTTCACT-ATTTTCACT
36848864 TAAAA
1 TAAAA
36848869 TTTTAAAGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (27 bp):
TAAAAAATTGATTTCACTATTTTCACT
Found at i:36849420 original size:23 final size:24
Alignment explanation
Indices: 36849377--36849421 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
36849367 CGTCAAGTTG
* *
36849377 CCGTCGGGCTACTGTTGACCACTA
1 CCGTCGGGCCACTGTTAACCACTA
36849401 CCGTC-GGCCACTGTTAACCAC
1 CCGTCGGGCCACTGTTAACCAC
36849422 CGTTGTTGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.18, C:0.38, G:0.22, T:0.22
Consensus pattern (24 bp):
CCGTCGGGCCACTGTTAACCACTA
Found at i:36850240 original size:21 final size:21
Alignment explanation
Indices: 36850199--36850241 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
36850189 GTCACTCTTT
*
36850199 TTTTATTTTTGCTTTTGTTTCG
1 TTTTATTTTT-CTTTTATTTCG
36850221 TTTTATTTTT-TTATTATTTCG
1 TTTTATTTTTCTT-TTATTTCG
36850242 AAATACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 2 0.11
21 7 0.37
22 10 0.53
ACGTcount: A:0.09, C:0.07, G:0.09, T:0.74
Consensus pattern (21 bp):
TTTTATTTTTCTTTTATTTCG
Found at i:36851513 original size:71 final size:70
Alignment explanation
Indices: 36851397--36851539 Score: 225
Period size: 71 Copynumber: 2.0 Consensus size: 70
36851387 CTTTTCAAAC
* * *
36851397 TCAAGTTTTAAACGATCTCGAGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATTCCA
1 TCAAGTTTTAAACGATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACT-GACATGATCCCA
36851462 TTTTTT
65 TTTTTT
*
36851468 TCAAGTTTTAAACGATCTC-AGGAATTAAGAAAAGATCGTGTCCTAACTTACTGACATGATCCCT
1 TCAAGTTTTAAACGATCTCGA-GAATTAAGAAAAGATCGTGTCCTAACTTACTGACATGATCCCA
36851532 TTTTTT
65 TTTTTT
36851538 TC
1 TC
36851540 GAGATAGCTA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
70 18 0.27
71 49 0.73
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (70 bp):
TCAAGTTTTAAACGATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGACATGATCCCAT
TTTTT
Found at i:36854845 original size:25 final size:25
Alignment explanation
Indices: 36854794--36854845 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
36854784 CTTGCATTTC
* *
36854794 TTCTTTCTTTCTTTTCCTTTTTCTT
1 TTCTTTCTTTCCTTTCCTGTTTCTT
36854819 TTCTTTCTTTCCTTT-CTGTTTCGTT
1 TTCTTTCTTTCCTTTCCTGTTTC-TT
36854844 TT
1 TT
36854846 GGCTTGGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.00, C:0.23, G:0.04, T:0.73
Consensus pattern (25 bp):
TTCTTTCTTTCCTTTCCTGTTTCTT
Found at i:36862132 original size:4 final size:4
Alignment explanation
Indices: 36862114--36862154 Score: 57
Period size: 4 Copynumber: 10.0 Consensus size: 4
36862104 CAAATGTTTC
36862114 ATTT A-TT ATTTT ATTT ATTT ATCTT ATTT ATTT ATTT ATTT
1 ATTT ATTT A-TTT ATTT ATTT AT-TT ATTT ATTT ATTT ATTT
36862155 GTTTTGTTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 3 0.09
4 24 0.71
5 7 0.21
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:36864966 original size:33 final size:32
Alignment explanation
Indices: 36864911--36864983 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 32
36864901 TATATAGTAA
* * *
36864911 AAAAATTAAAATATTTATTTTAGACATGATA-TT
1 AAAAATTAAAAAAATTAATTTAG--ATGATATTT
36864944 AAAAATTAAAAAAATTAATTTAGATGATATTT
1 AAAAATTAAAAAAATTAATTTAGATGATATTT
36864976 AAATAATT
1 AAA-AATT
36864984 GAATATAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 6 0.17
32 5 0.14
33 24 0.69
ACGTcount: A:0.53, C:0.01, G:0.05, T:0.40
Consensus pattern (32 bp):
AAAAATTAAAAAAATTAATTTAGATGATATTT
Done.