Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 115 of 141
Found at i:36865318 original size:10 final size:9
Alignment explanation
Indices: 36865294--36865324 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36865284 GCATTTAATT
36865294 AATTTTTAA
1 AATTTTTAA
36865303 AATTTTTAA
1 AATTTTTAA
*
36865312 AAGTTTTAA
1 AATTTTTAA
36865321 AATT
1 AATT
36865325 ATAAAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (9 bp):
AATTTTTAA
Found at i:36865331 original size:18 final size:18
Alignment explanation
Indices: 36865297--36865331 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36865287 TTTAATTAAT
* *
36865297 TTTTAAAATTTTTAAAAG
1 TTTTAAAATTATAAAAAG
36865315 TTTTAAAATTATAAAAA
1 TTTTAAAATTATAAAAA
36865332 TTATTTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
TTTTAAAATTATAAAAAG
Found at i:36865387 original size:19 final size:19
Alignment explanation
Indices: 36865338--36865387 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
36865328 AAAATTATTT
36865338 TTAAAAAATA-AAAAATCA
1 TTAAAAAATATAAAAATCA
*
36865356 TTAAAAAAGTATAAAAATGA
1 TTAAAAAA-TATAAAAATCA
36865376 -TAAAAATATATA
1 TTAAAAA-ATATA
36865388 TTTAAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 8 0.29
19 12 0.43
20 8 0.29
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (19 bp):
TTAAAAAATATAAAAATCA
Found at i:36866724 original size:3 final size:3
Alignment explanation
Indices: 36866716--36866747 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
36866706 GCATATCCTC
36866716 TCA TCA TCA TCA TCA TCA TCA TCA T-A TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
36866748 CCTTTAGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:36869204 original size:29 final size:30
Alignment explanation
Indices: 36869154--36869211 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
36869144 CCCCTATCAG
* *
36869154 CCCATATTTTACATTTATTCACACTTTAAC
1 CCCACATTTTACATTTATTCACAATTTAAC
36869184 CCCACATTTT-CATCTT-TTCACAATTTAA
1 CCCACATTTTACAT-TTATTCACAATTTAA
36869212 TCCCTAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.29, C:0.28, G:0.00, T:0.43
Consensus pattern (30 bp):
CCCACATTTTACATTTATTCACAATTTAAC
Found at i:36870269 original size:2 final size:2
Alignment explanation
Indices: 36870262--36870291 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
36870252 CAAAAACAAC
*
36870262 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36870292 TAAATCTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:36870995 original size:18 final size:18
Alignment explanation
Indices: 36870949--36870996 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
36870939 CCAAACACAC
36870949 CAGTAAACAGTAATCATAA
1 CAGT-AACAGTAATCATAA
* *
36870968 CGGTAGCAGTAA-CATGAA
1 CAGTAACAGTAATCAT-AA
36870986 CAGTAACAGTA
1 CAGTAACAGTA
36870997 TTCAACACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.19
Consensus pattern (18 bp):
CAGTAACAGTAATCATAA
Found at i:36871037 original size:45 final size:45
Alignment explanation
Indices: 36870974--36871123 Score: 248
Period size: 45 Copynumber: 3.3 Consensus size: 45
36870964 ATAACGGTAG
* *
36870974 CAGTAACA-TGAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
1 CAGTAACAGT-AACAGTAACAGTATTCGACACACAAAGTGCCGAAT
* *
36871019 CTGTAACAGTAACGGTAACAGTATTCGACACACAAAGTGCCGAAT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
36871064 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
36871109 CAGTAACAGTAACAG
1 CAGTAACAGTAACAG
36871124 AAGTTGGCAC
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 97 0.99
46 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (45 bp):
CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
Found at i:36876056 original size:44 final size:46
Alignment explanation
Indices: 36876006--36876095 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 46
36875996 AGCTATTCCC
**
36876006 TTCAACCAAACACAAT-AAT-ACT-ATTACAGTTCTATTCCATTACA
1 TTCAACCAAACA-AATGAATCACTGATTACAACTCTATTCCATTACA
*
36876050 TTCAACCAAACAATTGAATCACTGATTACAACTCTATTCCATTACA
1 TTCAACCAAACAAATGAATCACTGATTACAACTCTATTCCATTACA
36876096 GCCCTATTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
43 2 0.05
44 15 0.38
45 3 0.08
46 20 0.50
ACGTcount: A:0.40, C:0.26, G:0.03, T:0.31
Consensus pattern (46 bp):
TTCAACCAAACAAATGAATCACTGATTACAACTCTATTCCATTACA
Found at i:36876095 original size:16 final size:16
Alignment explanation
Indices: 36876074--36876124 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
36876064 TGAATCACTG
*
36876074 ATTACAACTCTATTCC
1 ATTACAACACTATTCC
* *
36876090 ATTACAGCCCTATTCC
1 ATTACAACACTATTCC
*
36876106 ATTACAACAGTATTCC
1 ATTACAACACTATTCC
36876122 ATT
1 ATT
36876125 CCAATGAACC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.04, T:0.35
Consensus pattern (16 bp):
ATTACAACACTATTCC
Found at i:36879796 original size:166 final size:166
Alignment explanation
Indices: 36879567--36879895 Score: 541
Period size: 166 Copynumber: 2.0 Consensus size: 166
36879557 TTTTAACCAA
* * * * *
36879567 TTTTATATTTAAAACTAGGTTTCATGCATATTTAAGCATAATCATAAGTTTGTTCAGTTTCAAAC
1 TTTTATATTAAAAACCAGGTTTAATGCATATTTAAGCATAATCATAAATTTGTCCAGTTTCAAAC
36879632 ATTTTTGCATGTAATGCAAACTAAAACCAACCAAAAATAACCCACGCCACAATCCAAATAAATTA
66 ATTTTTGCATGTAATGCAAACTAAAACCAACCAAAAATAACCCACGCCACAATCCAAATAAATTA
*
36879697 TTACAATCCCCAAATAAAAATTGATAAATTAAATTT
131 TTACAACCCCCAAATAAAAATTGATAAATTAAATTT
*
36879733 TTTTGTATTAAAAACCAGGTTTAATGCATATTTAAGCATAATCATAAATTTGTCCAGTTTCAAAC
1 TTTTATATTAAAAACCAGGTTTAATGCATATTTAAGCATAATCATAAATTTGTCCAGTTTCAAAC
* * * *
36879798 GTTTTTGCATGTAATGCAAACTAAAACCAACCAAAAATAACTCATGCCACAATCCAAATAATTTA
66 ATTTTTGCATGTAATGCAAACTAAAACCAACCAAAAATAACCCACGCCACAATCCAAATAAATTA
* *
36879863 TTACAGCCCCCAAATAGAAATTGATAAATTAAA
131 TTACAACCCCCAAATAAAAATTGATAAATTAAA
36879896 GTAAAAAAAC
Statistics
Matches: 150, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
166 150 1.00
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.32
Consensus pattern (166 bp):
TTTTATATTAAAAACCAGGTTTAATGCATATTTAAGCATAATCATAAATTTGTCCAGTTTCAAAC
ATTTTTGCATGTAATGCAAACTAAAACCAACCAAAAATAACCCACGCCACAATCCAAATAAATTA
TTACAACCCCCAAATAAAAATTGATAAATTAAATTT
Found at i:36883043 original size:32 final size:32
Alignment explanation
Indices: 36882971--36883050 Score: 92
Period size: 32 Copynumber: 2.4 Consensus size: 32
36882961 ATATATAGTA
* *
36882971 AAAAATTAAAATATATATTTTAGACATGATATT
1 AAAAATTAAAATAAATAATTTAGA-ATGATATT
36883004 AAAAATTAAAA-AAATAATTTAG-ATGATATTT
1 AAAAATTAAAATAAATAATTTAGAATGATA-TT
36883035 AAATAATTAAATATAA
1 AAA-AATTAAA-ATAA
36883051 TATAGCAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
30 6 0.15
31 5 0.12
32 16 0.39
33 12 0.29
34 2 0.05
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (32 bp):
AAAAATTAAAATAAATAATTTAGAATGATATT
Found at i:36883051 original size:30 final size:30
Alignment explanation
Indices: 36882971--36883051 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 30
36882961 ATATATAGTA
36882971 AAAAATTAAAATATATATTTTAGACATGATATT
1 AAAAATTAAAATATA-A-TTTAGA-ATGATATT
*
36883004 AAAAATTAAAAAAATAATTTAG-ATGATATTT
1 AAAAATT-AAAATATAATTTAGAATGATA-TT
36883035 AAATAATT-AAATATAAT
1 AAA-AATTAAAATATAAT
36883052 ATAGCAAATC
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
30 14 0.33
31 5 0.12
32 9 0.21
33 8 0.19
34 7 0.16
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.37
Consensus pattern (30 bp):
AAAAATTAAAATATAATTTAGAATGATATT
Found at i:36883484 original size:11 final size:9
Alignment explanation
Indices: 36883460--36883528 Score: 50
Period size: 9 Copynumber: 7.2 Consensus size: 9
36883450 TTAAAAGTTC
36883460 AAAAATTAT
1 AAAAATTAT
36883469 AAAAATTATTT
1 AAAAATTA--T
**
36883480 AAAAAAAAT
1 AAAAATTAT
*
36883489 AAAAAATCATT
1 -AAAAATTA-T
*
36883500 AAAAAAGTAT
1 -AAAAATTAT
36883510 AAAAATTAT
1 AAAAATTAT
36883519 AAAAA-TAT
1 AAAAATTAT
36883527 AA
1 AA
36883529 TTTTTAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
8 5 0.10
9 22 0.45
10 7 0.14
11 15 0.31
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:36883503 original size:19 final size:18
Alignment explanation
Indices: 36883481--36883528 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
36883471 AAATTATTTA
36883481 AAAAAAATAAAAAATCATT
1 AAAAAAATAAAAAATCA-T
* *
36883500 AAAAAAGTATAAAAATTAT
1 AAAAAAATA-AAAAATCAT
*
36883519 AAAAATATAA
1 AAAAAAATAA
36883529 TTTTTAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 16 0.67
20 7 0.29
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAAAATAAAAAATCAT
Found at i:36883523 original size:20 final size:20
Alignment explanation
Indices: 36883460--36883523 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
36883450 TTAAAAGTTC
*
36883460 AAAAATTATAAAAATTATTTAA
1 AAAAAATATAAAAATTA--TAA
* *
36883482 AAAAAATA-AAAAATCATTA
1 AAAAAATATAAAAATTATAA
*
36883501 AAAAAGTATAAAAATTATAA
1 AAAAAATATAAAAATTATAA
36883521 AAA
1 AAA
36883524 TATAATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 9 0.26
20 12 0.34
21 7 0.20
22 7 0.20
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAAAATATAAAAATTATAA
Found at i:36883688 original size:12 final size:12
Alignment explanation
Indices: 36883671--36883695 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36883661 ATTAAAAGAG
36883671 ATGAAAAATTAA
1 ATGAAAAATTAA
36883683 ATGAAAAATTAA
1 ATGAAAAATTAA
36883695 A
1 A
36883696 ATAACTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (12 bp):
ATGAAAAATTAA
Found at i:36885120 original size:18 final size:18
Alignment explanation
Indices: 36885097--36885133 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
36885087 TCATCATTAT
36885097 TATTAGTATTAT-TATTTA
1 TATTAGT-TTATATATTTA
36885115 TATTAGTTTATATATTTA
1 TATTAGTTTATATATTTA
36885133 T
1 T
36885134 CTACATACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTAGTTTATATATTTA
Found at i:36885899 original size:20 final size:20
Alignment explanation
Indices: 36885876--36885913 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
36885866 ACAAAAATAC
36885876 AAAAAAATTCAAAAACAGAA
1 AAAAAAATTCAAAAACAGAA
*
36885896 AAAACAATTCAAAAACAG
1 AAAAAAATTCAAAAACAG
36885914 TAAAGAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.71, C:0.13, G:0.05, T:0.11
Consensus pattern (20 bp):
AAAAAAATTCAAAAACAGAA
Found at i:36886687 original size:92 final size:93
Alignment explanation
Indices: 36886529--36886712 Score: 361
Period size: 92 Copynumber: 2.0 Consensus size: 93
36886519 GGACTTTTTC
36886529 TTTTGTTTATTTTAGGTTTCTCCCCTTAATTACTGCTTTAATGCCAATTTATTCCTCTGTTTCGT
1 TTTTGTTTATTTTAGGTTTCTCCCCTTAATTACTGCTTTAATGCCAATTTATTCCTCTGTTTCGT
36886594 TATTATTGCTATAAAATTATTTAGTTCA
66 TATTATTGCTATAAAATTATTTAGTTCA
36886622 TTTTGTTTA-TTTAGGTTTCTCCCCTTAATTACTGCTTTAATGCCAATTTATTCCTCTGTTTCGT
1 TTTTGTTTATTTTAGGTTTCTCCCCTTAATTACTGCTTTAATGCCAATTTATTCCTCTGTTTCGT
36886686 TATTATTGCTATAAAATTATTTAGTTC
66 TATTATTGCTATAAAATTATTTAGTTC
36886713 CATATTATTA
Statistics
Matches: 91, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
92 82 0.90
93 9 0.10
ACGTcount: A:0.21, C:0.16, G:0.10, T:0.53
Consensus pattern (93 bp):
TTTTGTTTATTTTAGGTTTCTCCCCTTAATTACTGCTTTAATGCCAATTTATTCCTCTGTTTCGT
TATTATTGCTATAAAATTATTTAGTTCA
Found at i:36895420 original size:20 final size:21
Alignment explanation
Indices: 36895386--36895451 Score: 89
Period size: 20 Copynumber: 3.1 Consensus size: 21
36895376 AAACTACTAG
*
36895386 AAATATGTGGATAAATCACCA
1 AAATATGTAGATAAATCACCA
*
36895407 AAAT-TGTAGATAAATTACCA
1 AAATATGTAGATAAATCACCA
*
36895427 GAAATATGTGGATAAATCACCA
1 -AAATATGTAGATAAATCACCA
36895449 AAA
1 AAA
36895452 ATGCAAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 14 0.36
21 11 0.28
22 14 0.36
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.24
Consensus pattern (21 bp):
AAATATGTAGATAAATCACCA
Found at i:36895430 original size:42 final size:42
Alignment explanation
Indices: 36895369--36895473 Score: 165
Period size: 42 Copynumber: 2.5 Consensus size: 42
36895359 CACCAGTATT
* *
36895369 TGCAAATAAACTACTAGAAATATGTGGATAAATCACCAAAAT
1 TGCAAATAAACTACCAGAAATATGTGGATAAATCACCAAAAA
* * *
36895411 TGTAGATAAATTACCAGAAATATGTGGATAAATCACCAAAAA
1 TGCAAATAAACTACCAGAAATATGTGGATAAATCACCAAAAA
36895453 TGCAAATAAACTACCAGAAAT
1 TGCAAATAAACTACCAGAAAT
36895474 TTTCTCCTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.23
Consensus pattern (42 bp):
TGCAAATAAACTACCAGAAATATGTGGATAAATCACCAAAAA
Found at i:36895441 original size:22 final size:22
Alignment explanation
Indices: 36895384--36895453 Score: 99
Period size: 22 Copynumber: 3.3 Consensus size: 22
36895374 ATAAACTACT
36895384 AGAAATATGTGGATAAATCACC
1 AGAAATATGTGGATAAATCACC
* *
36895406 A-AAAT-TGTAGATAAATTACC
1 AGAAATATGTGGATAAATCACC
36895426 AGAAATATGTGGATAAATCACC
1 AGAAATATGTGGATAAATCACC
*
36895448 AAAAAT
1 AGAAAT
36895454 GCAAATAAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 14 0.34
21 8 0.20
22 19 0.46
ACGTcount: A:0.50, C:0.11, G:0.14, T:0.24
Consensus pattern (22 bp):
AGAAATATGTGGATAAATCACC
Found at i:36901259 original size:10 final size:10
Alignment explanation
Indices: 36901229--36901266 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
36901219 TAAATAAATC
*
36901229 AAAAGAAAAAG
1 AAAAG-AAAGG
36901240 AAAA-AAAGG
1 AAAAGAAAGG
36901249 AAAAGAAAGG
1 AAAAGAAAGG
36901259 AAAAGAAA
1 AAAAGAAA
36901267 AAGAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 8 0.32
10 13 0.52
11 4 0.16
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAAGAAAGG
Found at i:36905234 original size:29 final size:28
Alignment explanation
Indices: 36905183--36905239 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
36905173 TAAAAACCAT
* *
36905183 GTTCTTTAGCGGCGCTTACAAAAAACGC
1 GTTCTTTAGCGGCGCTCAAAAAAAACGC
36905211 GTTCTTTAGCGGCGCTCAGAAAAAAACGC
1 GTTCTTTAGCGGCGCTCA-AAAAAAACGC
36905240 TGCTAAAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (28 bp):
GTTCTTTAGCGGCGCTCAAAAAAAACGC
Found at i:36905291 original size:43 final size:43
Alignment explanation
Indices: 36905211--36906210 Score: 1801
Period size: 43 Copynumber: 23.3 Consensus size: 43
36905201 CAAAAAACGC
* * * *
36905211 GTTCTTTAGCGGCGCTCAG-AAAAAAA-CGCTGCTAAAGACCAT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCT-CTAAAGACCGT
* *
36905253 GTTCTTTAGCGGCGCTTAGAAAAAAAACGCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905296 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
* *
36905339 GTTCTTTAGCGGCGCTTAGAAAAAAACCCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905382 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905425 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905468 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905511 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905554 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905597 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905640 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905683 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905726 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905769 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905812 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905855 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905898 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905941 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36905984 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36906027 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36906070 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
* * * *
36906113 GTTCTTTAGCGGCGCTTAG-AAAAAAACGCCGCTAAAGACCAT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
* * * * * *
36906155 GTTCGTTAGCGGCGCTTA-AGAAAAAACGCCGCTAAAGACCAT
1 GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
36906197 GTTCTTTAGCGGCA
1 GTTCTTTAGCGGCA
36906211 TTTATTCTTA
Statistics
Matches: 937, Mismatches: 18, Indels: 6
0.98 0.02 0.01
Matches are distributed among these distances:
42 89 0.09
43 846 0.90
44 2 0.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (43 bp):
GTTCTTTAGCGGCACTTAGAAAAAAAACCCCTCTAAAGACCGT
Found at i:36911402 original size:30 final size:31
Alignment explanation
Indices: 36911352--36911413 Score: 108
Period size: 30 Copynumber: 2.0 Consensus size: 31
36911342 CTCAATGAAA
36911352 TCAAACACAATATAAAAAAAATAAGCACCAC
1 TCAAACACAATATAAAAAAAATAAGCACCAC
*
36911383 TCAAAGACAATAT-AAAAAAATAAGCACCAC
1 TCAAACACAATATAAAAAAAATAAGCACCAC
36911413 T
1 T
36911414 TTATGTCTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 18 0.60
31 12 0.40
ACGTcount: A:0.60, C:0.21, G:0.05, T:0.15
Consensus pattern (31 bp):
TCAAACACAATATAAAAAAAATAAGCACCAC
Found at i:36912563 original size:24 final size:23
Alignment explanation
Indices: 36912530--36912694 Score: 189
Period size: 24 Copynumber: 7.7 Consensus size: 23
36912520 CACCCCAGGC
36912530 CTTGGGAATGATGGTATGGATGG
1 CTTGGGAATGATGGTATGGATGG
36912553 CTTTGGGAATGATGGTATGGA---
1 C-TTGGGAATGATGGTATGGATGG
36912574 --TGGGAATGATGGTATGGATGG
1 CTTGGGAATGATGGTATGGATGG
36912595 CTTTGGGAATGATGGTATGGA---
1 C-TTGGGAATGATGGTATGGATGG
36912616 --TGGGAATGATGGTATGGATGG
1 CTTGGGAATGATGGTATGGATGG
36912637 CTTTGGGAATGATGGTATGGA---
1 C-TTGGGAATGATGGTATGGATGG
36912658 --TGGGAATGATGGTATGGATGG
1 CTTGGGAATGATGGTATGGATGG
36912679 CCTTGGGAATGATGGT
1 -CTTGGGAATGATGGT
36912695 TTAGGGAAAG
Statistics
Matches: 123, Mismatches: 0, Indels: 37
0.77 0.00 0.23
Matches are distributed among these distances:
18 54 0.44
23 1 0.01
24 68 0.55
ACGTcount: A:0.23, C:0.04, G:0.42, T:0.31
Consensus pattern (23 bp):
CTTGGGAATGATGGTATGGATGG
Found at i:36912579 original size:18 final size:18
Alignment explanation
Indices: 36912556--36912678 Score: 138
Period size: 18 Copynumber: 6.2 Consensus size: 18
36912546 TGGATGGCTT
36912556 TGGGAATGATGGTATGGA
1 TGGGAATGATGGTATGGA
36912574 TGGGAATGATGGTATGGA
1 TGGGAATGATGGTATGGA
36912592 TGGCTTTGGGAATGATGGTATGGA
1 ------TGGGAATGATGGTATGGA
36912616 TGGGAATGATGGTATGGA
1 TGGGAATGATGGTATGGA
36912634 TGGCTTTGGGAATGATGGTATGGA
1 ------TGGGAATGATGGTATGGA
36912658 TGGGAATGATGGTATGGA
1 TGGGAATGATGGTATGGA
36912676 TGG
1 TGG
36912679 CCTTGGGAAT
Statistics
Matches: 93, Mismatches: 0, Indels: 24
0.79 0.00 0.21
Matches are distributed among these distances:
18 57 0.61
24 36 0.39
ACGTcount: A:0.24, C:0.02, G:0.44, T:0.30
Consensus pattern (18 bp):
TGGGAATGATGGTATGGA
Found at i:36912591 original size:42 final size:42
Alignment explanation
Indices: 36912532--36912694 Score: 317
Period size: 42 Copynumber: 3.9 Consensus size: 42
36912522 CCCCAGGCCT
36912532 TGGGAATGATGGTATGGATGGCTTTGGGAATGATGGTATGGA
1 TGGGAATGATGGTATGGATGGCTTTGGGAATGATGGTATGGA
36912574 TGGGAATGATGGTATGGATGGCTTTGGGAATGATGGTATGGA
1 TGGGAATGATGGTATGGATGGCTTTGGGAATGATGGTATGGA
36912616 TGGGAATGATGGTATGGATGGCTTTGGGAATGATGGTATGGA
1 TGGGAATGATGGTATGGATGGCTTTGGGAATGATGGTATGGA
*
36912658 TGGGAATGATGGTATGGATGGCCTTGGGAATGATGGT
1 TGGGAATGATGGTATGGATGGCTTTGGGAATGATGGT
36912695 TTAGGGAAAG
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 120 1.00
ACGTcount: A:0.23, C:0.03, G:0.43, T:0.31
Consensus pattern (42 bp):
TGGGAATGATGGTATGGATGGCTTTGGGAATGATGGTATGGA
Found at i:36913869 original size:26 final size:26
Alignment explanation
Indices: 36913834--36913892 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
36913824 AAATCTTAAA
36913834 AAAAAAAAAACCTCCATCATGAATCT
1 AAAAAAAAAACCTCCATCATGAATCT
* *
36913860 AAAAAAAAAACCTCCATCGTGAATTT
1 AAAAAAAAAACCTCCATCATGAATCT
*
36913886 ACAAAAA
1 AAAAAAA
36913893 TCACTATTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.56, C:0.20, G:0.05, T:0.19
Consensus pattern (26 bp):
AAAAAAAAAACCTCCATCATGAATCT
Found at i:36916163 original size:27 final size:28
Alignment explanation
Indices: 36916123--36916177 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
36916113 AAAAAAACTG
* *
36916123 ATAAAAATAAAAAATTA-TTAAATTTTA
1 ATAAAAATAAAAAAATATTTAAAATTTA
*
36916150 ATAAAAATATAAAAATATTTAAAATTTA
1 ATAAAAATAAAAAAATATTTAAAATTTA
36916178 TTCAAAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (28 bp):
ATAAAAATAAAAAAATATTTAAAATTTA
Found at i:36916185 original size:28 final size:27
Alignment explanation
Indices: 36916123--36916177 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
36916113 AAAAAAACTG
*
36916123 ATAAAAATAAAAAATTATTAAATTTTA
1 ATAAAAATAAAAAATTATTAAAATTTA
36916150 ATAAAAATATAAAAA-TATTTAAAATTTA
1 ATAAAAATA-AAAAATTA-TTAAAATTTA
36916178 TTCAAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (27 bp):
ATAAAAATAAAAAATTATTAAAATTTA
Found at i:36916204 original size:20 final size:21
Alignment explanation
Indices: 36916181--36916225 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
36916171 AAATTTATTC
36916181 AAAATTAG-AAAAAAAATATA
1 AAAATTAGTAAAAAAAATATA
* *
36916201 AAAA-TGGTAAAAAAATTATA
1 AAAATTAGTAAAAAAAATATA
36916221 AAAAT
1 AAAAT
36916226 GCTGTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (21 bp):
AAAATTAGTAAAAAAAATATA
Found at i:36916234 original size:19 final size:18
Alignment explanation
Indices: 36916211--36916262 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 18
36916201 AAAATGGTAA
36916211 AAAAATTATAAAAATGCTGT
1 AAAAATTATAAAAA-G-TGT
*
36916231 AAAATTTTATAAAAAGTGT
1 AAAA-ATTATAAAAAGTGT
36916250 AAAAATTATAAAA
1 AAAAATTATAAAA
36916263 TATATAGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 8 0.28
19 7 0.24
20 5 0.17
21 9 0.31
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAAATTATAAAAAGTGT
Found at i:36916234 original size:20 final size:19
Alignment explanation
Indices: 36916191--36916262 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
36916181 AAAATTAGAA
*
36916191 AAAAAATATAAAAATG-GT
1 AAAAATTATAAAAATGTGT
36916209 AAAAAAATTATAAAAATGCTGT
1 --AAAAATTATAAAAATG-TGT
*
36916231 AAAATTTTATAAAAA-GTGT
1 AAAA-ATTATAAAAATGTGT
36916250 AAAAATTATAAAA
1 AAAAATTATAAAA
36916263 TATATAGAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.17
19 7 0.15
20 20 0.43
21 9 0.20
22 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.08, T:0.28
Consensus pattern (19 bp):
AAAAATTATAAAAATGTGT
Found at i:36916590 original size:19 final size:19
Alignment explanation
Indices: 36916568--36916633 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
36916558 TTTTTGTGAC
*
36916568 TTTTATAAAATTTTACAAT
1 TTTTATAAAATTTTAAAAT
* *
36916587 TTTTCT-AATTTTTAAATAT
1 TTTTATAAAATTTTAAA-AT
36916606 TTTTATTAAAA-TTTAATAAT
1 TTTTA-TAAAATTTTAA-AAT
*
36916626 TTGTATAA
1 TTTTATAA
36916634 CTTTTATTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
18 8 0.22
19 14 0.38
20 12 0.32
21 3 0.08
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTTATAAAATTTTAAAAT
Found at i:36925825 original size:19 final size:18
Alignment explanation
Indices: 36925802--36925853 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 18
36925792 AAAATGGTAA
36925802 AAAAATTATAAAAATGCTGT
1 AAAAATTATAAAAA-G-TGT
*
36925822 AAAATTTTATAAAAAGTGT
1 AAAA-ATTATAAAAAGTGT
36925841 AAAAATTATAAAA
1 AAAAATTATAAAA
36925854 TATATAGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 8 0.28
19 7 0.24
20 5 0.17
21 9 0.31
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAAATTATAAAAAGTGT
Found at i:36925825 original size:20 final size:19
Alignment explanation
Indices: 36925782--36925853 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
36925772 AAAATTAGAA
*
36925782 AAAAAATATAAAAATG-GT
1 AAAAATTATAAAAATGTGT
36925800 AAAAAAATTATAAAAATGCTGT
1 --AAAAATTATAAAAATG-TGT
*
36925822 AAAATTTTATAAAAA-GTGT
1 AAAA-ATTATAAAAATGTGT
36925841 AAAAATTATAAAA
1 AAAAATTATAAAA
36925854 TATATAGAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.17
19 7 0.15
20 20 0.43
21 9 0.20
22 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.08, T:0.28
Consensus pattern (19 bp):
AAAAATTATAAAAATGTGT
Found at i:36926249 original size:29 final size:29
Alignment explanation
Indices: 36926171--36926270 Score: 63
Period size: 30 Copynumber: 3.6 Consensus size: 29
36926161 TTTATAATTT
* * *
36926171 TTTTTATGATTTTTA-TAAAATGTTACAATT
1 TTTTTATAATTTTTATTAAAAT-TT-TAATA
*
36926201 TTTTTATAATTTTT-CT--AATTTTGAATA
1 TTTTTATAATTTTTATTAAAATTTT-AATA
36926228 TTTTTAT-ATTTTTATTAAAATTCTATAA-A
1 TTTTTATAATTTTTATTAAAATT-T-TAATA
36926257 TTTTTAT--TTTTTAT
1 TTTTTATAATTTTTAT
36926271 AATCTTTTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
26 6 0.10
27 13 0.22
28 10 0.17
29 12 0.20
30 17 0.29
31 1 0.02
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (29 bp):
TTTTTATAATTTTTATTAAAATTTTAATA
Found at i:36928058 original size:5 final size:5
Alignment explanation
Indices: 36928048--36928072 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36928038 ACTTTTAGGG
36928048 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
36928073 GCCTTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:36928116 original size:16 final size:16
Alignment explanation
Indices: 36928084--36928131 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
36928074 CCTTTTCTTG
36928084 TTTATTATATAAATTTT
1 TTTATT-TATAAATTTT
*
36928101 TTTATTTATTAATTTT
1 TTTATTTATAAATTTT
36928117 TTTACTTTA-AAATTT
1 TTTA-TTTATAAATTT
36928132 GAAGTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTATTTATAAATTTT
Found at i:36929745 original size:10 final size:10
Alignment explanation
Indices: 36929712--36929745 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
36929702 GCATTTGGGC
36929712 TTTTTTTTCT
1 TTTTTTTTCT
*
36929722 TTTATTTATCT
1 TTT-TTTTTCT
36929733 TTTTTTTTCT
1 TTTTTTTTCT
36929743 TTT
1 TTT
36929746 CGTTTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:36931944 original size:51 final size:51
Alignment explanation
Indices: 36931868--36931969 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
36931858 CTGTATGAGC
*
36931868 TATGATGGGTGAAGATCGAGAAATCTGCTGGTTCGGGTACCTTAACTTTAG
1 TATGATGGGTGAAGATCGAGAAATCTGCTGGTTCAGGTACCTTAACTTTAG
36931919 TATGATGGGTGAAGATCGAGAAATCTGCTGGTTCAGGTACCTTAACTTTAG
1 TATGATGGGTGAAGATCGAGAAATCTGCTGGTTCAGGTACCTTAACTTTAG
36931970 AGCCAAACCG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (51 bp):
TATGATGGGTGAAGATCGAGAAATCTGCTGGTTCAGGTACCTTAACTTTAG
Found at i:36934119 original size:12 final size:14
Alignment explanation
Indices: 36934102--36934134 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
36934092 ATACTTTTTA
36934102 TATATACATAT-T-
1 TATATACATATATC
36934114 TATATACATATATC
1 TATATACATATATC
36934128 TATATAC
1 TATATAC
36934135 TCTTTTTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 1 0.05
14 7 0.37
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATACATATATC
Found at i:36936615 original size:52 final size:53
Alignment explanation
Indices: 36936535--36936641 Score: 198
Period size: 52 Copynumber: 2.0 Consensus size: 53
36936525 AAAAGAGTTC
36936535 GTGAGATTTATCATAACGCTCGAATGAAGAAGAGGATCGAATGTCTCCACCTAT
1 GTGAGATTTAT-ATAACGCTCGAATGAAGAAGAGGATCGAATGTCTCCACCTAT
36936589 GTGAGATTTAT-TAACGCTCGAATGAAGAAGAGGATCGAATGTCTCCACCTAT
1 GTGAGATTTATATAACGCTCGAATGAAGAAGAGGATCGAATGTCTCCACCTAT
36936641 G
1 G
36936642 AGGGTAAAGT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
52 42 0.79
54 11 0.21
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (53 bp):
GTGAGATTTATATAACGCTCGAATGAAGAAGAGGATCGAATGTCTCCACCTAT
Found at i:36937144 original size:49 final size:50
Alignment explanation
Indices: 36937071--36937171 Score: 195
Period size: 49 Copynumber: 2.0 Consensus size: 50
36937061 GACAAGTTCA
36937071 AGTTCCAATCTGAGGGGCAATCTAACTAATCCTGTTGTCCTTGATGATCT
1 AGTTCCAATCTGAGGGGCAATCTAACTAATCCTGTTGTCCTTGATGATCT
36937121 AGTTCCAATCTG-GGGGCAATCTAACTAATCCTGTTGTCCTTGATGATCT
1 AGTTCCAATCTGAGGGGCAATCTAACTAATCCTGTTGTCCTTGATGATCT
36937170 AG
1 AG
36937172 CAGAAACAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 39 0.76
50 12 0.24
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (50 bp):
AGTTCCAATCTGAGGGGCAATCTAACTAATCCTGTTGTCCTTGATGATCT
Found at i:36938939 original size:6 final size:6
Alignment explanation
Indices: 36938928--36939004 Score: 79
Period size: 6 Copynumber: 13.0 Consensus size: 6
36938918 AACATACCAA
* * *
36938928 AAAAAG AAAAAG AAAAAG --AAAG AAAAAG AAGAA- AAGAAG AAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
*
36938973 AGAAATG AAAAAG AAAAAAG AAAAAG AAAAAG
1 A-AAAAG AAAAAG -AAAAAG AAAAAG AAAAAG
36939005 GAAAGGCCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
4 4 0.06
5 5 0.08
6 43 0.69
7 10 0.16
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (6 bp):
AAAAAG
Found at i:36938943 original size:13 final size:13
Alignment explanation
Indices: 36938928--36939008 Score: 85
Period size: 13 Copynumber: 6.2 Consensus size: 13
36938918 AACATACCAA
36938928 AAAAAG-AAAAAG
1 AAAAAGAAAAAAG
36938940 AAAAAGAAAGAAA-
1 AAAAAGAAA-AAAG
*
36938953 AAGAAGAAAAGAAG
1 AAAAAGAAAA-AAG
* * *
36938967 AAGAAGAGAAATG
1 AAAAAGAAAAAAG
36938980 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
*
36938993 AAAAAGAAAAAGG
1 AAAAAGAAAAAAG
36939006 AAA
1 AAA
36939009 GGCCAAGGTG
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
12 7 0.12
13 39 0.67
14 12 0.21
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:36938961 original size:19 final size:20
Alignment explanation
Indices: 36938929--36939004 Score: 79
Period size: 19 Copynumber: 3.9 Consensus size: 20
36938919 ACATACCAAA
*
36938929 AAAAGAAAAAGAAAAAGAAAG
1 AAAAGAGAAAGAAAAAG-AAG
36938950 AAAA-AG-AAG-AAAAGAAG
1 AAAAGAGAAAGAAAAAGAAG
36938967 AAGAAGAGAAATGAAAAAGAA-
1 AA-AAGAGAAA-GAAAAAGAAG
*
36938988 AAAAGAAAAAGAAAAAG
1 AAAAGAGAAAGAAAAAG
36939005 GAAAGGCCAA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
17 5 0.10
18 7 0.15
19 12 0.25
20 10 0.21
21 7 0.15
22 7 0.15
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (20 bp):
AAAAGAGAAAGAAAAAGAAG
Found at i:36940114 original size:6 final size:6
Alignment explanation
Indices: 36940103--36940179 Score: 79
Period size: 6 Copynumber: 13.0 Consensus size: 6
36940093 AACATACCAA
* * *
36940103 AAAAAG AAAAAG AAAAAG --AAAG AAAAAG AAGAA- AAGAAG AAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
*
36940148 AGAAATG AAAAAG AAAAAAG AAAAAG AAAAAG
1 A-AAAAG AAAAAG -AAAAAG AAAAAG AAAAAG
36940180 GAAAGGCCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
4 4 0.06
5 5 0.08
6 43 0.69
7 10 0.16
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (6 bp):
AAAAAG
Found at i:36940118 original size:13 final size:13
Alignment explanation
Indices: 36940103--36940183 Score: 85
Period size: 13 Copynumber: 6.2 Consensus size: 13
36940093 AACATACCAA
36940103 AAAAAG-AAAAAG
1 AAAAAGAAAAAAG
36940115 AAAAAGAAAGAAA-
1 AAAAAGAAA-AAAG
*
36940128 AAGAAGAAAAGAAG
1 AAAAAGAAAA-AAG
* * *
36940142 AAGAAGAGAAATG
1 AAAAAGAAAAAAG
36940155 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
*
36940168 AAAAAGAAAAAGG
1 AAAAAGAAAAAAG
36940181 AAA
1 AAA
36940184 GGCCAAGGTG
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
12 7 0.12
13 39 0.67
14 12 0.21
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:36940136 original size:19 final size:20
Alignment explanation
Indices: 36940104--36940179 Score: 79
Period size: 19 Copynumber: 3.9 Consensus size: 20
36940094 ACATACCAAA
*
36940104 AAAAGAAAAAGAAAAAGAAAG
1 AAAAGAGAAAGAAAAAG-AAG
36940125 AAAA-AG-AAG-AAAAGAAG
1 AAAAGAGAAAGAAAAAGAAG
36940142 AAGAAGAGAAATGAAAAAGAA-
1 AA-AAGAGAAA-GAAAAAGAAG
*
36940163 AAAAGAAAAAGAAAAAG
1 AAAAGAGAAAGAAAAAG
36940180 GAAAGGCCAA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
17 5 0.10
18 7 0.15
19 12 0.25
20 10 0.21
21 7 0.15
22 7 0.15
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (20 bp):
AAAAGAGAAAGAAAAAGAAG
Found at i:36941656 original size:99 final size:99
Alignment explanation
Indices: 36941476--36941768 Score: 453
Period size: 99 Copynumber: 2.9 Consensus size: 99
36941466 AAACCATAGT
* * * *
36941476 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCAGGCGGTGCAGCAGAACAGA
1 TTGCAATT-AAAAGATTGAGGCCACAACGGTGAATCTTACTTCCCAGGCGGTGCAGCGGAACAGA
36941541 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
65 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* *
36941576 TTGCAATTAAAAGATTGTGGCCACAACGGTGAATCTTACCTCCCAGGCGGTGCAGCGGAACAGAT
1 TTGCAATTAAAAGATTGAGGCCACAACGGTGAATCTTACTTCCCAGGCGGTGCAGCGGAACAGAT
36941641 TGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
66 TGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* *
36941675 TTGCAATTAAAAGATTGAGGCCACAACGGTGAATCTTACTTCCCAGAG-GGTGCAGTGGAACAAA
1 TTGCAATTAAAAGATTGAGGCCACAACGGTGAATCTTACTTCCCAG-GCGGTGCAGCGGAACAGA
* * * *
36941739 TTGAAGCTTCAATGGCAAATCTTACTTCCC
65 TTGAAGCTACAACGGCGAATCTTGCTTCCC
36941769 AGACGGCACA
Statistics
Matches: 178, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
99 169 0.95
100 9 0.05
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (99 bp):
TTGCAATTAAAAGATTGAGGCCACAACGGTGAATCTTACTTCCCAGGCGGTGCAGCGGAACAGAT
TGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
Found at i:36941769 original size:149 final size:150
Alignment explanation
Indices: 36941598--36942245 Score: 572
Period size: 149 Copynumber: 4.3 Consensus size: 150
36941588 GATTGTGGCC
* * * *
36941598 ACAACGGTGAATCTTACCTCCCAGGCGGTGCAGCGGAACAGATTGAAGCTACAACGGCGAATCTT
1 ACAACGGCGAATCTTACTTCCCAGACGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT
* *
36941663 GC-TTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACGGTGAATCTTAC-TTCCCAGAGGGT
66 GCTTTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCCAG-CGGT
36941726 GCAGTGGAACAAATTGAAGCT
130 GCAGTGGAACAAATTGAAGCT
* * * ** * * *
36941747 TCAATGGCAAATCTTACTTCCCAGACGGCACAGTGGAACAGATTAAAGCTACAACGGTGAATCTC
1 ACAACGGCGAATCTTACTTCCCAGACGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT
* *
36941812 GC-TTCCCCGAAATTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCCAGGCGAT
66 GCTTTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCCA-GCGGT
*
36941876 GCAGTGGAACAGATTGAAGCT
130 GCAGTGGAACAAATTGAAGCT
* * ** * * * * *
36941897 ACAACGGCGAATCTCACTTCCCCGACATTGCAAT-TAAAAGATTGAGGCCACAACGGCGAATCTT
1 ACAACGGCGAATCTTACTTCCCAGACGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT
* * * ** * * * * * * * ** * **
36941961 ACTTTCCCAGGCGGTGCAGTGGAACATATTAAAGCTACAACGGCGAATCTCGC-TTCCCCGACAT
66 GCTTTCCCCGACATTGCAAT-TAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCCAG-CGG
* * * *
36942025 TGCAAT-TAA-AAGATTGAGGCC
129 TGCAGTGGAACAA-ATTGAAGCT
* * * * * * *
36942046 AAAACGGTGAATCTTACTTTCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACAATGGTGAATCT
1 ACAACGGCGAATCTTAC-TTCCCAGACGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCT
* * *
36942111 TGCTTTCCCCGACATTTCAATTAAAAGATTGAGGCAACAACGGCAAATCTTACTTTCCCTAGCGG
65 TGCTTTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCC-AGCGG
* * * *
36942176 TGTAGTGGAATAGATTGAAGCC
129 TGCAGTGGAACAAATTGAAGCT
* ** ** **
36942198 ACGACGGCGAATCTTACTTCCTTGACATTGCAGTGGAGTAGATTGAAG
1 ACAACGGCGAATCTTACTTCCCAGACGGTGCAGTGGAACAGATTGAAG
36942246 AAGCCAATCA
Statistics
Matches: 380, Mismatches: 107, Indels: 22
0.75 0.21 0.04
Matches are distributed among these distances:
148 1 0.00
149 150 0.39
150 107 0.28
151 96 0.25
152 25 0.07
153 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (150 bp):
ACAACGGCGAATCTTACTTCCCAGACGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT
GCTTTCCCCGACATTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCCAGCGGTG
CAGTGGAACAAATTGAAGCT
Found at i:36941868 original size:100 final size:100
Alignment explanation
Indices: 36941756--36942229 Score: 655
Period size: 100 Copynumber: 4.7 Consensus size: 100
36941746 TTCAATGGCA
* ** *
36941756 AATCTTAC-TTCCCAGACGGCACAGTGGAACAGATTAAAGCTACAACGGTGAATCTCGCTTCCCC
1 AATCTTACTTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTCGCTTCCCC
*
36941820 GAAATTGCAATTAAAAGATTGAGGCCACAACGGCG
66 GACATTGCAATTAAAAGATTGAGGCCACAACGGCG
* * *
36941855 AATCTTACTTTCCCAGGCGATGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTCACTTCCCC
1 AATCTTACTTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTCGCTTCCCC
36941920 GACATTGCAATTAAAAGATTGAGGCCACAACGGCG
66 GACATTGCAATTAAAAGATTGAGGCCACAACGGCG
*
36941955 AATCTTACTTTCCCAGGCGGTGCAGTGGAACATATTAAAGCTACAACGGCGAATCTCGCTTCCCC
1 AATCTTACTTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTCGCTTCCCC
* *
36942020 GACATTGCAATTAAAAGATTGAGGCCAAAACGGTG
66 GACATTGCAATTAAAAGATTGAGGCCACAACGGCG
* * * * * *
36942055 AATCTTACTTTCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGCTTTCCC
1 AATCTTACTTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTCGC-TTCCC
* * *
36942120 CGACATTTCAATTAAAAGATTGAGGCAACAACGGCA
65 CGACATTGCAATTAAAAGATTGAGGCCACAACGGCG
* * * * * ** *
36942156 AATCTTACTTTCCCTA-GCGGTGTAGTGGAATAGATTGAAGCCACGACGGCGAATCTTACTTCCT
1 AATCTTACTTTCCC-AGGCGGTGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTCGCTTCCC
*
36942220 TGACATTGCA
65 CGACATTGCA
36942230 GTGGAGTAGA
Statistics
Matches: 336, Mismatches: 36, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
99 8 0.02
100 241 0.72
101 86 0.26
102 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (100 bp):
AATCTTACTTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTCGCTTCCCC
GACATTGCAATTAAAAGATTGAGGCCACAACGGCG
Found at i:36943352 original size:11 final size:11
Alignment explanation
Indices: 36943338--36943363 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
36943328 ACGCGATAGT
36943338 GCGACGATGGC
1 GCGACGATGGC
36943349 GCGACGATGGC
1 GCGACGATGGC
36943360 GCGA
1 GCGA
36943364 TGGCAGCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.27, G:0.46, T:0.08
Consensus pattern (11 bp):
GCGACGATGGC
Found at i:36943862 original size:3 final size:3
Alignment explanation
Indices: 36943842--36944314 Score: 921
Period size: 3 Copynumber: 157.7 Consensus size: 3
36943832 TTTAGCAATT
*
36943842 TTA TTA TT- TTG TTCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36943887 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36943935 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36943983 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36944031 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36944079 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36944127 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36944175 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36944223 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36944271 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
36944315 CATATCTATA
Statistics
Matches: 467, Mismatches: 1, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
2 2 0.00
3 463 0.99
4 2 0.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:36948689 original size:15 final size:15
Alignment explanation
Indices: 36948669--36948702 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
36948659 GAGTCAAAGA
36948669 AAAAAATGAAAAATG
1 AAAAAATGAAAAATG
*
36948684 AAAAAATGAAAAATT
1 AAAAAATGAAAAATG
36948699 AAAA
1 AAAA
36948703 TGGATAGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:36950142 original size:44 final size:44
Alignment explanation
Indices: 36949962--36950144 Score: 111
Period size: 44 Copynumber: 4.2 Consensus size: 44
36949952 AATATTGTAG
*
36949962 ATCTTATCTCCCTAAGCAGTGGTGGAGCAGATCGAGGACGGAAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGAAA
* ** * * ***
36950006 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTATGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAGGACGGAAA
** * * * * * * * ** * *
36950050 GCCTTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGAAA
*
36950094 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAGGACGGAAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGAAA
36950138 ATCTTAT
1 ATCTTAT
36950145 ATTTCCAAGA
Statistics
Matches: 94, Mismatches: 39, Indels: 12
0.65 0.27 0.08
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 77 0.82
45 6 0.06
46 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGACGGAAA
Found at i:36950368 original size:128 final size:129
Alignment explanation
Indices: 36949917--36950560 Score: 709
Period size: 128 Copynumber: 5.0 Consensus size: 129
36949907 TGAAATTGCT
* *
36949917 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTT-GAATATTGTAGATCTTATCTCCCTAAGCAG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGGAA-ATTATAGATCTTGTCTCCCTAAGCAG
* * * * *
36949981 TGGTGGAGCAGATCGAGGACGGAAAATCTTATCTTTCCAAGATAGT-GGGAAGCAGATTTATGCC
65 TAGCGGAGCAGATCGAAGACGGAAAATCTTATC-TT-CAAG-T-GTAAGGAAGCAGATTTAAGCC
36950045 ACCA
126 ACCA
* * * *
36950049 AGCCTTATCTCCTTGAGCAGCAGTGGAGTAGGTT-GAAGATTGTAGATCTTATCTCCCTAAGTAG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGGAA-ATTATAGATCTTGTCTCCCTAAGCAG
* * * * * *
36950113 TAGTGGAGCAGATCGAGGACGGAAAATCTTATATTTCCAAGATAGT-GGGAAGCAGGTTTATGCC
65 TAGCGGAGCAGATCGAAGACGGAAAATCTTAT-CTT-CAAG-T-GTAAGGAAGCAGATTTAAGCC
36950177 ACCA
126 ACCA
* *
36950181 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAAT-TTGTCTCCCTAAGCAG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGGAAATTATAG-ATCTTGTCTCCCTAAGCAG
* ** * *
36950245 TAGCGGAGCAGATCGAAGATGGCGAATCTTATCATCAAGTGTAAGGAAGTAGATTTAAGCCA-CA
65 TAGCGGAGCAGATCGAAGACGGAAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACCA
* * * *
36950309 TGTCC-TATGTCCTTG-GTCAGCAGTGGAATAGGTTGGAAATTATAGATCTTGTCTCCCTAAGCA
1 AG-CCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGGAAATTATAGATCTTGTCTCCCTAAGCA
* *
36950372 GTAGCGGAGCAGATCAAAGAC-GACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCA-
64 GTAGCGGAGCAGATCGAAGACGGA-AAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
36950435 CA
128 CA
* * * * *
36950437 AGTCC-TATATCCCTG-GCCAGCAGTGGAATAGGTTGGAAATTACAGATATTGTCTCCCTCAGCA
1 AG-CCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGGAAATTATAGATCTTGTCTCCCTAAGCA
* ** *
36950500 GTAGCGGAGTAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGC
64 GTAGCGGAGCAGATCGAAGACGGAAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
36950561 TGATAATCCT
Statistics
Matches: 454, Mismatches: 49, Indels: 22
0.86 0.09 0.04
Matches are distributed among these distances:
127 4 0.01
128 218 0.48
129 19 0.04
130 4 0.01
131 1 0.00
132 204 0.45
133 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (129 bp):
AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGGAAATTATAGATCTTGTCTCCCTAAGCAGT
AGCGGAGCAGATCGAAGACGGAAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACCA
Found at i:36950701 original size:44 final size:44
Alignment explanation
Indices: 36950652--36950994 Score: 234
Period size: 44 Copynumber: 7.8 Consensus size: 44
36950642 TCGCATCAGG
* * **
36950652 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAGGAAGCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
* * * * *
36950696 TCTTATCCCCCTAAAGTTACAGTGTG-GCAGATCGAAGATGACAAA
1 TCTTATCTCCCTGAAGTTGCAGTG-GAGCAGATTGAAGAAG-CAAA
* * **
36950741 TCTTATCTCCCTGAAGTTACAATGGAGCAGATTGAAGCCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCA-AA
* * * * *
36950785 TCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAA-TATA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
** * * * * **
36950829 TCTTATCTATCTGAAGTTGCAGT--AG-AG-TGGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGAAGCAAA
** * * *
36950870 TCTTATCTCATTGAGGTTGCAGTGGAGCAGATTG-AGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAGCAAA
* ** * *
36950914 TCTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
* *
36950958 TCTTATCTCCTTGAGGTTGCAGTGGAGCAGATTGAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
36950995 TCGATAATCC
Statistics
Matches: 225, Mismatches: 60, Indels: 28
0.72 0.19 0.09
Matches are distributed among these distances:
40 3 0.01
41 23 0.10
42 2 0.01
43 4 0.02
44 153 0.68
45 40 0.18
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAGCAAA
Found at i:36951053 original size:44 final size:45
Alignment explanation
Indices: 36950956--36951054 Score: 105
Period size: 44 Copynumber: 2.2 Consensus size: 45
36950946 TGAAGAAGCA
* * * *
36950956 AATCTTATCT-CCTTGAGGTTGCAGTGGAGCAGATTGAAGTCGAT
1 AATCTTATCTCCCTTGAGGTTACAATGGAGCAGATTAAAGTCAAT
* * *
36951000 AATCCTATCTCCCTT-AGGTTATAATGGAGCGGATTAAAGT-AAT
1 AATCTTATCTCCCTTGAGGTTACAATGGAGCAGATTAAAGTCAAT
36951043 AGATCTTATCTC
1 A-ATCTTATCTC
36951055 TCTAAAGTTG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
43 3 0.07
44 38 0.84
45 4 0.09
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (45 bp):
AATCTTATCTCCCTTGAGGTTACAATGGAGCAGATTAAAGTCAAT
Found at i:36951065 original size:217 final size:217
Alignment explanation
Indices: 36950548--36951090 Score: 748
Period size: 218 Copynumber: 2.5 Consensus size: 217
36950538 AGTGTAAGGA
* *
36950548 AGCAGATTGAAGCTGATAATCCTATCTCCCTGAAGTTATAGTGAAGCAAATTAAAGTAATAGATC
1 AGCAGATTGAAGC-GATAATCCTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTAATAGATC
* * *
36950613 TTATCTCTCTGAAGTTGTAGCAGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGA
65 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCACTGAAGTTGCAGCGGA
* * * * * *
36950678 GCAGATTGAGGAAGCAGGTCTTATCCCCCTAAAGTTACAGTGTGGCAGATCGAAGATGACAAATC
130 GCAGATTGAGAAAACAAGTCTTATCCCCCTAAAGTCACAGTGGGGCAGATCGAAGAAGACAAATC
36950743 TTATCTCCCTGAAGTTACAATGG
195 TTATCTCCCTGAAGTTACAATGG
* *
36950766 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATATATC
1 AGCAGATTGAAG-CGATAATCCTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTAATAGATC
* * * *
36950831 TTATCTATCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCATTGAGGTTGCAGTGGA
65 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCACTGAAGTTGCAGCGGA
*
36950896 GCAGATTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGA-CTGAAGAAG-CAAAT
130 GCAGATTGAGAAAACAAGTCTTATCCCCCTAAAGTCACAGTGGGGCAGATC-GAAGAAGACAAAT
* * * *
36950959 CTTATCTCCTTGAGGTTGCAGTGG
194 CTTATCTCCCTGAAGTTACAATGG
* * * *
36950983 AGCAGATTGAAGTCGATAATCCTATCTCCCTTAGGTTATAATGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAG-CGATAATCCTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTAATAGATC
* * *** *
36951048 TTATCTCTCTAAAGTTGCAATAGAGCATATCGCATCAAGTCTT
65 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTT
36951091 GCCGACTAGA
Statistics
Matches: 287, Mismatches: 36, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
217 120 0.42
218 166 0.58
219 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (217 bp):
AGCAGATTGAAGCGATAATCCTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTAATAGATCT
TATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCACTGAAGTTGCAGCGGAG
CAGATTGAGAAAACAAGTCTTATCCCCCTAAAGTCACAGTGGGGCAGATCGAAGAAGACAAATCT
TATCTCCCTGAAGTTACAATGG
Found at i:36955077 original size:28 final size:28
Alignment explanation
Indices: 36955036--36955117 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
36955026 AACTTAAATC
* *
36955036 AAACATATTTGTGAAGTCTACACTTAGA
1 AAACACATCTGTGAAGTCTACACTTAGA
* *
36955064 AAATACATCTGTGAACTCTACACTTAGA
1 AAACACATCTGTGAAGTCTACACTTAGA
*
36955092 AAACACATTTGTGAAGTCTACACTTA
1 AAACACATCTGTGAAGTCTACACTTA
36955118 AAGTCCCTTC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (28 bp):
AAACACATCTGTGAAGTCTACACTTAGA
Found at i:36958054 original size:49 final size:49
Alignment explanation
Indices: 36957963--36958059 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 49
36957953 ATCTATTTAT
* * * * *
36957963 AGGTTGAAAAACCTTATTTTAATTAATGTCAAACAGATGAAGTGTAATA
1 AGGTTGAAAAACCTTATATTAATTAATGTAAAACAAAAGAAGTATAATA
*
36958012 AGGTTGAAAAACCTTATATTAATTAATGTAAAATAAAAGAAGTATAAT
1 AGGTTGAAAAACCTTATATTAATTAATGTAAAACAAAAGAAGTATAAT
36958060 TCTATATGGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.32
Consensus pattern (49 bp):
AGGTTGAAAAACCTTATATTAATTAATGTAAAACAAAAGAAGTATAATA
Found at i:36961826 original size:23 final size:23
Alignment explanation
Indices: 36961800--36961855 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
36961790 TATTCCTTTT
36961800 TTTAATTTGTTATATAT-TATTAA
1 TTTAATTTGTTATATATATATT-A
**
36961823 TTTAATTT-CCATATATATATTA
1 TTTAATTTGTTATATATATATTA
*
36961845 TTTAATATGTT
1 TTTAATTTGTT
36961856 TTTCATGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (23 bp):
TTTAATTTGTTATATATATATTA
Found at i:36966952 original size:4 final size:4
Alignment explanation
Indices: 36966943--36966973 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
36966933 TATTTTCACT
36966943 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
36966974 ATATATTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:36970923 original size:31 final size:30
Alignment explanation
Indices: 36970885--36970952 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 30
36970875 AGATCCAATC
36970885 AAAAAATATTTCAAAAA-AATAATAATAAATG
1 AAAAAATATTTCAAAAATAATAAT-A-AAATG
36970916 AAAAAATATTTCAAAAATAATAATAAAATG
1 AAAAAATATTTCAAAAATAATAATAAAATG
36970946 AAAAAAT
1 AAAAAAT
36970953 GATAATGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
30 12 0.33
31 18 0.50
32 6 0.17
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (30 bp):
AAAAAATATTTCAAAAATAATAATAAAATG
Found at i:36970932 original size:30 final size:31
Alignment explanation
Indices: 36970885--36970952 Score: 113
Period size: 29 Copynumber: 2.2 Consensus size: 31
36970875 AGATCCAATC
36970885 AAAAAATATTTCAAAAAAATAATAAT-AAATG
1 AAAAAATATTTC-AAAAAATAATAATAAAATG
36970916 AAAAAATATTTC-AAAAATAATAATAAAATG
1 AAAAAATATTTCAAAAAATAATAATAAAATG
36970946 AAAAAAT
1 AAAAAAT
36970953 GATAATGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 12 0.33
30 12 0.33
31 12 0.33
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (31 bp):
AAAAAATATTTCAAAAAATAATAATAAAATG
Found at i:36970985 original size:12 final size:11
Alignment explanation
Indices: 36970962--36970994 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
36970952 TGATAATGAT
36970962 GAAAAAA-AAA
1 GAAAAAAGAAA
36970972 GAAAAAAGAGAA
1 GAAAAAAGA-AA
36970984 GAAAAAAGAAA
1 GAAAAAAGAAA
36970995 AGGAAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.33
11 3 0.14
12 11 0.52
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
GAAAAAAGAAA
Found at i:36971991 original size:50 final size:51
Alignment explanation
Indices: 36971931--36972028 Score: 171
Period size: 50 Copynumber: 1.9 Consensus size: 51
36971921 AAGGAGAATT
*
36971931 GACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCTAAAA-AAAAAGAC
1 GACCAAGGTGAAAACCAGCAAAGGGCACTTTGAGTCCTAAAACAAAAAGAC
*
36971981 GACCAAGGTGAAAACCAGCAAAGGGCGCTTTGAGTCCTAAAACAAAAA
1 GACCAAGGTGAAAACCAGCAAAGGGCACTTTGAGTCCTAAAACAAAAA
36972029 AAATGGAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 40 0.89
51 5 0.11
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.12
Consensus pattern (51 bp):
GACCAAGGTGAAAACCAGCAAAGGGCACTTTGAGTCCTAAAACAAAAAGAC
Found at i:36973349 original size:44 final size:44
Alignment explanation
Indices: 36973286--36974795 Score: 740
Period size: 44 Copynumber: 33.8 Consensus size: 44
36973276 GAAGATGGTA
* *
36973286 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGACAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* **
36973330 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAGTTACAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--ACAAT
* * * * * *
36973376 --TCTTATTTCTCTGAAGTTGTAGTGGAGCAGACTGAAGA-AAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAA-T
* * * * * *
36973418 AAGTTTTATCCCCCTGAAGTTACAGTGGGGCAGACTGAAGATGGC-A-
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GACAAT
* * *
36973464 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* *
36973508 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATTTAC-A-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA--GACAAT
* * * *
36973552 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGA-AAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAA-T
* * * * *
36973596 AAGTCTTATCCCCCTGAAGTTGCAGTGG-GTTAGACTGAATATGGC--G
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAG-CAGA-TTAA-A-GACAAT
* *
36973642 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * * * **
36973686 AATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAG-TGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * * * * **
36973729 AAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTAATGATAGCG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA-AT
* * ** * *
36973775 AATCTTATTTCCCTGAAGCTGTGGTGGAACAGATTAAAGCGATAAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA--GA-CAAT
* * * * * *
36973822 CACAGATTTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCATGGC-A-
1 ---A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * * *
36973867 AATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTACAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* *
36973911 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGAC-AT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * * * * * *
36973954 CAGTCTTATCTCCCTGAAGATGCAATAGAGCATACTAAAGATAGCA-
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA--AT
* * * * * *
36974000 AATCTCATTTCCCTAAAGTTGCTGTGGAACAGATTAAAGCTATAAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-CAAT
* * * ** * * *
36974047 CACAAATCTTATCTCTCTGAAGTTACAGTAGAGTGGA-TCATGGC-A-
1 ----AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * **
36974092 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAG-TGA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * * * * * * * *
36974134 AGTCTTATCTTCTTAAAGTTGCAGTGGAGTAGACTAATGATAACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAA-T
* * * *
36974179 AATCTTATTTCCCTGAAGCTGC-GTTGGAACAGATTAAAGCTATAAAT
1 AATCTTATCTCCCTGAAGTTGCAG-TGGAGCAGATTAAAG--A-CAAT
* ** * *
36974226 CACAGGTCTTATC-CATCTGAAGTTGCAGTAAAGCAGA-TCATGAC-A-
1 -A-A--TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * *
36974271 AATCTTATCTCCCGGAAGTTGCAGTCGAGCAGATTACAG-CTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAC-AAT
* * *
36974315 AAT-TGTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAAT
1 AATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * * *
36974359 GAATCTTATTTCCCTAAAGTTGCAGTGGAGCATATTAAAGCTATAAATT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-CAA-T
* * * * * * * *
36974408 ACAGATCTTATCTCTCTGAAGTTGTAGTAGAGTACA-TCATGGC-A-
1 --A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* *
36974452 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * * *
36974496 AATCCTATCTCCCTAAAGTTGCAGTAGAGCGGATT---GA-AAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * * * * **
36974536 GAAGTTTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAATGATAGCG
1 -AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA-AT
* * * * *
36974583 AATCTTATTTCCCTGAAGCTGCAGTGAAACAGATTAAAGCTATAAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-CAAT
* * * * *
36974630 CACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCATG-GAA-
1 ----AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* *
36974675 AATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTATAGACAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* * ** * **
36974719 AATCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTGAAGACACC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
* *
36974763 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
36974796 CTGAAGATAG
Statistics
Matches: 1084, Mismatches: 281, Indels: 202
0.69 0.18 0.13
Matches are distributed among these distances:
40 3 0.00
41 144 0.13
42 81 0.07
43 18 0.02
44 401 0.37
45 248 0.23
46 27 0.02
47 9 0.01
48 13 0.01
49 2 0.00
50 17 0.02
51 120 0.11
52 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT
Found at i:36973580 original size:178 final size:178
Alignment explanation
Indices: 36973276--36973792 Score: 748
Period size: 178 Copynumber: 2.9 Consensus size: 178
36973266 ATGAATCAAA
* * *
36973276 GAAGATGGTAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGACAATAATCCTATCTC
1 GAAGATGGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCTATCTC
* * * * * *
36973341 CCTGAAGTTGCAGTGGAGTGGATTAAAGTTACAATTCTTATTTCTCTGAAGTTGTAGTGGAGCAG
66 CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAA
* *
36973406 ACTGAAGAAAGCAAGTTTTATCCCCCTGAAGTTACAGTGGGGCAGACT
131 ACTAAAGAAAGCAAGTCTTATCCCCCTGAAGTTACAGTGGGGCAGACT
* * *
36973454 GAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTAAAGCCAATAATCCTATCTC
1 GAAGATGGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCTATCTC
* *
36973519 CCTGAAGTTGCAGTGGAGCAGATTAAATTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAA
66 CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAA
* **
36973584 ACTAAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGTTAGACT
131 ACTAAAGAAAGCAAGTCTTATCCCCCTGAAGTTACAGTGGGGCAGACT
* *
36973632 GAATATGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCTATCTC
1 GAAGATGGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCTATCTC
* * * * *
36973697 CCTGAAATTGTAGTGGAGCGGATTAAAGTGATAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAA
66 CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAA
* * **
36973762 ACTAATGATAGCGAA-TCTTATTTCCCTGAAG
131 ACTAAAGAAAGC-AAGTCTTATCCCCCTGAAG
36973793 CTGTGGTGGA
Statistics
Matches: 303, Mismatches: 35, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
178 301 0.99
179 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (178 bp):
GAAGATGGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCTATCTC
CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAA
ACTAAAGAAAGCAAGTCTTATCCCCCTGAAGTTACAGTGGGGCAGACT
Found at i:36973621 original size:133 final size:134
Alignment explanation
Indices: 36973288--36974838 Score: 644
Period size: 133 Copynumber: 11.6 Consensus size: 134
36973278 AGATGGTAAA
* * * * *
36973288 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGACAA--TAATCCTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGA-AAGCAAATCTTATCTCCCTGAAGTTG
*** * * * *
36973351 CAGTGGAGTGGATTAAAGTTACAAT--TCTTATTTCTCTGAAGTTGTAGTGGAGCAGACTGAAGA
65 CAGTGGAGCAAATTAAAG--ACAATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGA
36973414 AAGCA-AG
128 AA-CACAG
* * * * * **
36973421 TTTTATCCCCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
* * * * ***
36973486 AGTGAAGCAAATTAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATTTAC
66 AGTGGAGCAAATTAAAGACAATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGAAAC
36973551 A-AG
131 ACAG
* * *
36973554 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGAAAGCAAGTCTTATCCCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
* * * * *
36973619 AGTGG-GTTAGACTGAATATGGC--GAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG
66 AGTGGAG-CA-AATTAA-A-GACAATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG
* *
36973681 CCAATA-A-
127 -AAACACAG
* * * * * ** * * *
36973688 TCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTGA-TAAGTCTTATCTCCTTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
* * * ** * * * *
36973752 AGTGGAGCAAACTAATGATAGCGAATCTTATTTCCCTGAAGCTGTGGTGGAACAGATTAAAGCGA
66 AGTGGAGCAAATTAAAGACA-ATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAA--G-
36973817 TAAATCACAG
127 -AAA-CACAG
* * * * * * *
36973827 ATTTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCATG---GCAAATCTTATCTCCTTGAAGTTA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTG
* * * * * *
36973888 CAGTGGAGCAGATTACAGCCAATAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAG--A
65 CAGTGGAGCAAATTAAAGACAATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGAAA
36973951 CATCAG
130 CA-CAG
* * * * * * * *
36973957 TCTTATCTCCCTGAAGATGCAATAGAGCATACTAAAGATAGCAAATCTCATTTCCCTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
* * * * * ** * ** *
36974022 TGTGGAACAGATTAAAGCTATAAATCACAAATCTTATCTCTCTGAAGTTACAGTAGAGTGGA-TC
66 AGTGGAGCAAATTAAAG--A-CAAT----AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTA
* * *
36974086 ATG--GCA-AA
124 AAGAAACACAG
* * * * * * * *
36974094 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAG--TG-AAGTCTTATCTTCTTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
* * * * * * * * * *
36974156 AGTGGAGTAGACTAATGATAACGAATCTTATTTCCCTGAAGCTG-CGTTGGAACAGATTAAAGCT
66 AGTGGAGCAAATTAAAGACAA-TAATCTTATCTCCCTGAAGTTGTAG-TGGAGCAGATTAAAG--
36974220 ATAAATCACAGG
127 --AAA-CACA-G
* ** * * *
36974232 TCTTATC-CATCTGAAGTTGCAGTAAAGCAGA-TCATG--A-CAAATCTTATCTCCCGGAAGTTG
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTG
* * * * * *
36974292 CAGTCGAGCAGATTACAG-CTAATAAT-TGTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA
65 CAGTGGAGCAAATTAAAGAC-AATAATCT-TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGA
*
36974355 TAATGA-A-
128 -AA-CACAG
* * * * * * *
36974362 TCTTATTTCCCTAAAGTTGCAGTGGAGCATATTAAAGCTATAAATTACAGATCTTATCTCTCTGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAG----AAA--GCAAATCTTATCTCCCTGA
* * * * * * * * *
36974427 AGTTGTAGTAGAGTACA-TCATGGC-A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAA
60 AGTTGCAGTGGAGCAAATTAAAGACAATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAA
* *
36974489 AGCCAATA-A-
125 AG-AAACACAG
* * * * * * * *
36974498 TCCTATCTCCCTAAAGTTGCAGTAGAGCGGA-T--TGAAATG-AAGTTTTATCTCCTTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAA-GCAAATCTTATCTCCCTGAAGTTG
* * * * ** * * * * *
36974559 CAGTGGAGCAGACTAATGATAGCGAATCTTATTTCCCTGAAGCTGCAGTGAAACAGATTAAAGCT
65 CAGTGGAGCAAATTAAAGACA-ATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG--
*
36974624 ATAAATCACAAA
127 --AAA-CAC-AG
* * * * *
36974636 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCATG---GAAAATCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
* * * * * * ** * *
36974697 AGAGGAGCAGATTATAGACAATAATCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTGAAGACAC
66 AGTGGAGCAAATTAAAGACAATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGAAAC
36974762 -CAG
131 ACAG
* * * *** **
36974765 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCGGGTCTTATCTTTCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
*
36974830 AGTAGAGCA
66 AGTGGAGCA
36974839 GACCATAACA
Statistics
Matches: 1063, Mismatches: 272, Indels: 166
0.71 0.18 0.11
Matches are distributed among these distances:
127 26 0.02
128 27 0.03
129 63 0.06
130 35 0.03
131 41 0.04
132 13 0.01
133 221 0.21
134 171 0.16
135 9 0.01
136 128 0.12
137 179 0.17
138 56 0.05
139 10 0.01
140 84 0.08
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (134 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
AGTGGAGCAAATTAAAGACAATAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGAAAC
ACAG
Found at i:36973914 original size:225 final size:225
Alignment explanation
Indices: 36973636--36974126 Score: 705
Period size: 225 Copynumber: 2.2 Consensus size: 225
36973626 TAGACTGAAT
* *
36973636 ATGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTG
1 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTG
* ** * * * *
36973701 AAATTGTAGTGGAGCGGATTAAAGTGATAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTA
66 AAATTGCAGTGGAGCGGATTAAAGACATAAGTCTTATCTCCCTGAAGATGCAATAGAGCAAACTA
* * * * * *
36973766 ATGATAGCGAATCTTATTTCCCTGAAGCTG-TGGTGGAACAGATTAAAGCGATAAATCACAGATT
131 AAGATAGCAAATCTCATTTCCCTAAAGCTGCT-GTGGAACAGATTAAAGCGATAAATCACAAATC
*
36973830 TTATCTCTCTGAAGTTGCAGTAGAGCAGATC
195 TTATCTCTCTGAAGTTACAGTAGAGCAGATC
* * * *
36973861 ATGGCAAATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTACAGCCAATAATCTTATCTCCCTG
1 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTG
* * * *
36973926 AAGTTGCAGTGGAGCGGATTGAAGACATCAGTCTTATCTCCCTGAAGATGCAATAGAGCATACTA
66 AAATTGCAGTGGAGCGGATTAAAGACATAAGTCTTATCTCCCTGAAGATGCAATAGAGCAAACTA
* *
36973991 AAGATAGCAAATCTCATTTCCCTAAAGTTGCTGTGGAACAGATTAAAGCTATAAATCACAAATCT
131 AAGATAGCAAATCTCATTTCCCTAAAGCTGCTGTGGAACAGATTAAAGCGATAAATCACAAATCT
**
36974056 TATCTCTCTGAAGTTACAGTAGAGTGGATC
196 TATCTCTCTGAAGTTACAGTAGAGCAGATC
*
36974086 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
36974127 GAAGTGAAGT
Statistics
Matches: 234, Mismatches: 31, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
225 233 1.00
226 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (225 bp):
ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTG
AAATTGCAGTGGAGCGGATTAAAGACATAAGTCTTATCTCCCTGAAGATGCAATAGAGCAAACTA
AAGATAGCAAATCTCATTTCCCTAAAGCTGCTGTGGAACAGATTAAAGCGATAAATCACAAATCT
TATCTCTCTGAAGTTACAGTAGAGCAGATC
Found at i:36974098 original size:181 final size:178
Alignment explanation
Indices: 36973911--36974525 Score: 725
Period size: 181 Copynumber: 3.4 Consensus size: 178
36973901 TACAGCCAAT
*
36973911 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGACATCAGTCTTATCTCCCTGAAGATG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAG-CAT-AGTCTTATCTCCCTGAAGTTG
* * * * * *
36973976 CAATAGAGCATACTAAAGATAGCAAATCTCATTTCCCTAAAGTTGCTGTGGAACAGATTAAAGCT
64 CAGTGGAGCAGACTAAAGATAACGAATCTTATTTCCCTAAAGTTGC-GTGGAACAGATTAAAGCT
* * *
36974041 ATAAATCACAAATCTTATCTCTCTGAAGTTACAGTAGAGTGGATCATGGCA
128 ATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATGGCA
* * * *
36974092 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGTGA-AGTCTTATCTTCTTAAAGTTGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAG-CATAGTCTTATCTCCCTGAAGTTGC
* * * *
36974156 AGTGGAGTAGACTAATGATAACGAATCTTATTTCCCTGAAGCTGCGTTGGAACAGATTAAAGCTA
65 AGTGGAGCAGACTAAAGATAACGAATCTTATTTCCCTAAAGTTGCG-TGGAACAGATTAAAGCTA
* * * *
36974221 TAAATCACAGGTCTTATC-CATCTGAAGTTGCAGTAAAGCAGATCATGACA
129 TAAATCACAGATCTTATCTC-TCTGAAGTTGCAGTAGAGTAGATCATGGCA
* * * *
36974271 AATCTTATCTCCCGGAAGTTGCAGTCGAGCAGATT-ACAGCTAATAAT-TGTATCTCCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGA-AGC--ATAGTCT-TATCTCCCTGAAGT
* * * *
36974334 TGCAGTGGAGCAGACTGAAGATAATGAATCTTATTTCCCTAAAGTTGCAGTGGAGCATATTAAAG
62 TGCAGTGGAGCAGACTAAAGATAACGAATCTTATTTCCCTAAAGTTGC-GTGGAACAGATTAAAG
* * *
36974399 CTATAAATTACAGATCTTATCTCTCTGAAGTTGTAGTAGAGTACATCATGGCA
126 CTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATGGCA
* * * * * *
36974452 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAGCCAATAATCCTATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAG-C-ATAGTCTTATCTCCCTGAAGTTG
*
36974517 CAGTAGAGC
64 CAGTGGAGC
36974526 GGATTGAAAT
Statistics
Matches: 370, Mismatches: 52, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
178 3 0.01
179 146 0.39
180 2 0.01
181 215 0.58
182 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (178 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGCATAGTCTTATCTCCCTGAAGTTGCA
GTGGAGCAGACTAAAGATAACGAATCTTATTTCCCTAAAGTTGCGTGGAACAGATTAAAGCTATA
AATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATGGCA
Found at i:36974249 original size:404 final size:400
Alignment explanation
Indices: 36973458--36974829 Score: 1622
Period size: 404 Copynumber: 3.4 Consensus size: 400
36973448 CAGACTGAAG
* * *
36973458 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTAAAGCCAATAATCCTATCTCCCTG
1 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTACAGCCAATAATCCTATCTCCCTG
** * *
36973523 AAGTTGCAGTGGAGCAGATT-AA-ATTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAAC
66 AAGTTGCAGTGGAGCAGATTGAAGACAT-C-AGTCTTATCTCCCTAAAGTTGCAGTGGAGCATAC
* * * * * *
36973586 TAAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGG-G-TTAGACTGA-ATATGGCGAATCTT
129 TAAAGATAGCAAATCTTATCTCCCTGAAGTTGCTGTGGAGATTA-ACT-ATAAATGGCAAATCTT
* * *
36973648 ATCTCCCTGAAGTTGTAGTGGAGCA-GATTAAAGCCAATAATCCTATCTCCCTGAAATTGTAGTG
192 ATCTCCCTGAAGTTGCAGTGGAG-AGGA-TAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTG
* *
36973712 GAGCGGATTAAAGTGATAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTAATGATAGCGAA
255 GAGCGGATTGAAGTG--AAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAATGATAGCGAA
* * *
36973777 TCTTATTTCCCTGAAGCTGTGGTGGAACAGATTAAAGCGATAAATCACAGATTTTATCTCTCTGA
318 TCTTATTTCCCTGAAGCTG-CGTGGAACAGATTAAAGCTATAAATCACAGATCTTATCTCTCTGA
36973842 AGTTGCAGTAGAGCAGATC
382 AGTTGCAGTAGAGCAGATC
* * *
36973861 ATGGCAAATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTACAGCCAATAATCTTATCTCCCTG
1 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTACAGCCAATAATCCTATCTCCCTG
* * * * *
36973926 AAGTTGCAGTGGAGCGGATTGAAGACATCAGTCTTATCTCCCTGAAGATGCAATAGAGCATACTA
66 AAGTTGCAGTGGAGCAGATTGAAGACATCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCATACTA
* * * **
36973991 AAGATAGCAAATCTCATTTCCCTAAAGTTGCTGTGGAACAGATTAAAGCTATAAATCACAAATCT
131 AAGATAGCAAATCTTATCTCCCTGAAGTTGCTGTGG---AGATT-AA-CTATAAATGGCAAATCT
* * * * * * * *
36974056 TATCTCTCTGAAGTTACAGTAGAGTGGATCATGGC-A-AATCTTATCTCCCTGAAGTTGCAGTGG
191 TATCTCCCTGAAGTTGCAGTGGAGAGGATAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGG
* * * *
36974119 AGCGGATTGAAGTGAAGTCTTATCTTCTTAAAGTTGCAGTGGAGTAGACTAATGATAACGAATCT
256 AGCGGATTGAAGTGAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAATGATAGCGAATCT
*
36974184 TATTTCCCTGAAGCTGCGTTGGAACAGATTAAAGCTATAAATCACAGGTCTTATC-CATCTGAAG
321 TATTTCCCTGAAGCTGCG-TGGAACAGATTAAAGCTATAAATCACAGATCTTATCTC-TCTGAAG
*
36974248 TTGCAGTAAAGCAGATC
384 TTGCAGTAGAGCAGATC
* * * * **
36974265 ATGACAAATCTTATCTCCCGGAAGTTGCAGTCGAGCAGATTACAGCTAATAATTGTATCTCCCTG
1 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTACAGCCAATAATCCTATCTCCCTG
* * * * * *
36974330 AAGTTGCAGTGGAGCAGACTGAAGATAATGAATCTTATTTCCCTAAAGTTGCAGTGGAGCATATT
66 AAGTTGCAGTGGAGCAGATTGAAGA-CATCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCATACT
* * * * *
36974395 AAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTG-TAGT--AGAGT-AC-AT-CATGGCAAA
130 AAAG--AT--A--GCAAATCTTATCTCCCTGAAGTTGCT-GTGGAGATTAACTATAAATGGCAAA
* *
36974454 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAGCCAATAATCCTATCTCCCTAAAGTTGCA
188 TCTTATCTCCCTGAAGTTGCAGTGGAG-AGGATAAAGCCAATAATCCTATCTCCCTGAAGTTGCA
* * *
36974519 GTAGAGCGGATTGAAATGAAGTTTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAATGATAGCGA
252 GTGGAGCGGATTGAAGTGAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAATGATAGCGA
* *
36974584 ATCTTATTTCCCTGAAGCTGCAGTGAAACAGATTAAAGCTATAAATCACAAATCTTATCTCTCTG
317 ATCTTATTTCCCTGAAGCTGC-GTGGAACAGATTAAAGCTATAAATCACAGATCTTATCTCTCTG
36974649 AAGTTGCAGTAGAGCAGATC
381 AAGTTGCAGTAGAGCAGATC
* * * * *
36974669 ATGGAAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTATAGACAATAATCCTATCTCTCTG
1 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTACAGCCAATAATCCTATCTCCCTG
** * * *
36974734 AAGTTGCAGTGGAGTGGATTGAAGACACCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTG
66 AAGTTGCAGTGGAGCAGATTGAAGACATCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCATACTA
*** **
36974799 AAGATAGCGGGTCTTATCTTTCTGAAGTTGC
131 AAGATAGCAAATCTTATCTCCCTGAAGTTGC
36974830 AGTAGAGCAG
Statistics
Matches: 820, Mismatches: 122, Indels: 59
0.82 0.12 0.06
Matches are distributed among these distances:
397 20 0.02
399 1 0.00
401 32 0.04
402 8 0.01
403 178 0.22
404 434 0.53
405 38 0.05
406 41 0.05
407 4 0.00
408 8 0.01
409 35 0.04
410 1 0.00
411 20 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (400 bp):
ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTACAGCCAATAATCCTATCTCCCTG
AAGTTGCAGTGGAGCAGATTGAAGACATCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCATACTA
AAGATAGCAAATCTTATCTCCCTGAAGTTGCTGTGGAGATTAACTATAAATGGCAAATCTTATCT
CCCTGAAGTTGCAGTGGAGAGGATAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGG
ATTGAAGTGAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAATGATAGCGAATCTTATTT
CCCTGAAGCTGCGTGGAACAGATTAAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGT
AGAGCAGATC
Found at i:36974549 original size:223 final size:224
Alignment explanation
Indices: 36974320--36974804 Score: 697
Period size: 223 Copynumber: 2.2 Consensus size: 224
36974310 CTAATAATTG
* *
36974320 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAATGAATCTTATTTCCCTAAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACGAATCTTATTTCCCTAAAGCTGCAGT
* * * * * * *
36974385 GGAGCATATTAAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGTAGTAGAGTACATCATGG
66 GAAACAGATTAAAGCTATAAATCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCACATCATGG
* * *
36974450 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAGCCAATAATCCTATCTCCCTAAAGT
131 AAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGAATAAAGACAATAATCCTATCTCCCTAAAGT
* *
36974515 TGCAGTAGAGCGGATTGAA-ATGA-AGTTT
196 TGCAGTAGAGCGGATTGAAGA-CACAGTCT
* * *
36974543 TATCTCCTTGAAGTTGCAGTGGAGCAGACT-AATGATAGCGAATCTTATTTCCCTGAAGCTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-GATAACGAATCTTATTTCCCTAAAGCTGCAG
*
36974607 TGAAACAGATTAAAGCTATAAATCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATG
65 TGAAACAGATTAAAGCTATAAATCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCACATCATG
* * * *
36974672 GAAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTATAGACAATAATCCTATCTCTCTGAAG
130 GAAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGAATAAAGACAATAATCCTATCTCCCTAAAG
* *
36974737 TTGCAGTGGAGTGGATTGAAGACACCAGTCT
195 TTGCAGTAGAGCGGATTGAAGACA-CAGTCT
*
36974768 TATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
36974805 GCGGGTCTTA
Statistics
Matches: 231, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
222 2 0.01
223 190 0.82
224 1 0.00
225 36 0.16
226 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (224 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACGAATCTTATTTCCCTAAAGCTGCAGT
GAAACAGATTAAAGCTATAAATCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCACATCATGG
AAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGAATAAAGACAATAATCCTATCTCCCTAAAGT
TGCAGTAGAGCGGATTGAAGACACAGTCT
Found at i:36974801 original size:44 final size:44
Alignment explanation
Indices: 36974636--36974888 Score: 161
Period size: 44 Copynumber: 5.9 Consensus size: 44
36974626 AAATCACAAA
* * *
36974636 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATG--GA-A--AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-C-TGAAGACACCAG
* * ** *
36974677 TCTTATCTCCCTGAAGTTGCAGAGGAGCAGA-TTATAGACAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-AGACACCAG
* * ** *
36974721 TCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTGAAGACACCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACACCAG
* * **
36974765 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCGGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACA-CCAG
** * *
36974810 TCTTATCTTTCTGAAGTTGCAGTAGAGCAGAC-CATA-ACA--AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-AGACACCAG
*
36974851 TCTTATC-CCCTTGAAGTTGCAATAGG-GCAGACTGAAGA
1 TCTTATCTCCC-TGAAGTTGCAGT-GGAGCAGACTGAAGA
36974889 TAGCAGATCT
Statistics
Matches: 165, Mismatches: 34, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
38 1 0.01
40 1 0.01
41 56 0.34
42 4 0.02
44 70 0.42
45 33 0.20
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACACCAG
Found at i:36976303 original size:11 final size:10
Alignment explanation
Indices: 36976284--36976309 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
36976274 GCCCCTTTAC
36976284 TTCTTTTTTT
1 TTCTTTTTTT
36976294 TTCTTTTTTT
1 TTCTTTTTTT
36976304 TTCTTT
1 TTCTTT
36976310 CAATTCTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:36987039 original size:16 final size:16
Alignment explanation
Indices: 36987018--36987051 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36987008 TTTCTGTGAG
*
36987018 TTTTTCCATCTTTTTC
1 TTTTTCCATCTTCTTC
*
36987034 TTTTTCCTTCTTCTTC
1 TTTTTCCATCTTCTTC
36987050 TT
1 TT
36987052 GATTTTTCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTCCATCTTCTTC
Found at i:36987888 original size:30 final size:30
Alignment explanation
Indices: 36987852--36987912 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36987842 TTGGTGCAGA
* * *
36987852 ATCATCATGATTTTCAACAACAGCAACATC
1 ATCATCATCATTTGCAACAACAACAACATC
*
36987882 ATCATCATCATTTGCAACAGCAACAACATC
1 ATCATCATCATTTGCAACAACAACAACATC
36987912 A
1 A
36987913 ACAGCAATGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.28, G:0.07, T:0.25
Consensus pattern (30 bp):
ATCATCATCATTTGCAACAACAACAACATC
Found at i:36991585 original size:18 final size:17
Alignment explanation
Indices: 36991557--36991591 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36991547 NNNNNNNAGA
*
36991557 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
36991574 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
36991592 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:36991738 original size:16 final size:16
Alignment explanation
Indices: 36991719--36991770 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
36991709 GATTTGCTAT
* *
36991719 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
36991735 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36991751 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36991767 TACA
1 TACA
36991771 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:36991967 original size:120 final size:121
Alignment explanation
Indices: 36991754--36991995 Score: 461
Period size: 120 Copynumber: 2.0 Consensus size: 121
36991744 AATCCAATAC
36991754 ACCTCTAATCCAATACAGCGAACCAAACTGGCCCTTAGCGACTGAAGTGATAATGTTTTTCTCTG
1 ACCTCTAATCCAATACAGCGAACCAAACTGGCCCTTAGCGACTGAAGTGATAATGTTTTTCTCTG
36991819 TGATTTGGGCGTAGGGGGAGGCTCAGACTGGTGAATTCGGTGTTC-CATATTAACA
66 TGATTTGGGCGTAGGGGGAGGCTCAGACTGGTGAATTCGGTGTTCTCATATTAACA
36991874 ACCTCTAATCCAATACAGCGAACCAAAC-GTGCCCTTAGCGACTGAAGTGATAATGTTTTTCTCT
1 ACCTCTAATCCAATACAGCGAACCAAACTG-GCCCTTAGCGACTGAAGTGATAATGTTTTTCTCT
36991938 GTGATTTGGGCGTAGGGGGAGGCTCAGACTGGTGAATTCGGTGTTCTCATATTAACA
65 GTGATTTGGGCGTAGGGGGAGGCTCAGACTGGTGAATTCGGTGTTCTCATATTAACA
36991995 A
1 A
36991996 TAGTTAAACA
Statistics
Matches: 120, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
119 1 0.01
120 108 0.90
121 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (121 bp):
ACCTCTAATCCAATACAGCGAACCAAACTGGCCCTTAGCGACTGAAGTGATAATGTTTTTCTCTG
TGATTTGGGCGTAGGGGGAGGCTCAGACTGGTGAATTCGGTGTTCTCATATTAACA
Found at i:36997130 original size:17 final size:17
Alignment explanation
Indices: 36997108--36997144 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
36997098 GATTAGTAGT
*
36997108 TTTTTTTCTATTAATCC
1 TTTTTTTCTAATAATCC
*
36997125 TTTTTTTCTAATAATTC
1 TTTTTTTCTAATAATCC
36997142 TTT
1 TTT
36997145 AATTTGTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTTTCTAATAATCC
Found at i:37000989 original size:17 final size:17
Alignment explanation
Indices: 37000959--37001004 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 17
37000949 TAACCGAATT
37000959 GGGCTGTGTGGGCCACAC
1 GGGC-GTGTGGGCCACAC
*
37000977 GGGCGTGTTGGCCACAC
1 GGGCGTGTGGGCCACAC
37000994 GGGCGTGTGGG
1 GGGCGTGTGGG
37001005 ATTTTTGGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.09, C:0.24, G:0.50, T:0.17
Consensus pattern (17 bp):
GGGCGTGTGGGCCACAC
Found at i:37025722 original size:28 final size:27
Alignment explanation
Indices: 37025691--37025761 Score: 72
Period size: 30 Copynumber: 2.5 Consensus size: 27
37025681 ATTTGTTTTT
37025691 AATAAATAAATAAAAAATAA-AAACAACA
1 AATAAATAAATAAAAAATAATAAA-AA-A
* *
37025719 AATATATATAAATAAAAACTAATTAAAAA
1 AATA-A-ATAAATAAAAAATAATAAAAAA
37025748 AATAAAATAAATAA
1 AAT-AAATAAATAA
37025762 TTACATTATG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
28 12 0.32
29 6 0.16
30 17 0.46
31 2 0.05
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (27 bp):
AATAAATAAATAAAAAATAATAAAAAA
Found at i:37026417 original size:17 final size:17
Alignment explanation
Indices: 37026395--37026447 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
37026385 ATTACAAAAT
37026395 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
37026412 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
* *
37026431 CATATCCTCGAAGATTA
1 CATATCTTCTAAGATTA
37026448 TGTTTTCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 15 0.50
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:37026418 original size:22 final size:23
Alignment explanation
Indices: 37026379--37026423 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
37026369 AAGTTAAATC
37026379 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTACAAAATCATATCT
*
37026402 TCTAAGATTAC-ATATCATATCT
1 TCTAAGATTACAAAATCATATCT
37026424 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (23 bp):
TCTAAGATTACAAAATCATATCT
Found at i:37026426 original size:19 final size:20
Alignment explanation
Indices: 37026379--37026436 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
37026369 AAGTTAAATC
*
37026379 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
37026402 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
37026421 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
37026437 CTCGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:37033420 original size:23 final size:26
Alignment explanation
Indices: 37033393--37033447 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 26
37033383 TCATAGGCAA
37033393 TATATAAT-TACT-TCATG-CCAAAAC
1 TATATAATATA-TATCATGACCAAAAC
37033417 -ATAT-ATATATATCATGACCAAAAC
1 TATATAATATATATCATGACCAAAAC
37033441 TATATAA
1 TATATAA
37033448 CTCAAGCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
22 3 0.12
23 11 0.42
24 7 0.27
25 4 0.15
26 1 0.04
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (26 bp):
TATATAATATATATCATGACCAAAAC
Found at i:37040288 original size:65 final size:60
Alignment explanation
Indices: 37040215--37040338 Score: 167
Period size: 65 Copynumber: 2.0 Consensus size: 60
37040205 ATATATATAT
* *
37040215 ATATATCTTACTTGACAATTAGTTGAGAACTGATTGTTGATTGTAGTGGTTGATATGATTAATTA
1 ATATATCTTACTTGACAATTAGTTGACAAC----T-CTGATTGTAGTGGTTGATATGATTAATTA
* *
37040280 ATATATCTTATTTGACAATTAGTTGACAACTCTGATTGTAGTGGTTGATTTGATTAATT
1 ATATATCTTACTTGACAATTAGTTGACAACTCTGATTGTAGTGGTTGATATGATTAATT
37040339 GATTTGATCA
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
60 26 0.47
61 1 0.02
65 28 0.51
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (60 bp):
ATATATCTTACTTGACAATTAGTTGACAACTCTGATTGTAGTGGTTGATATGATTAATTA
Found at i:37042453 original size:24 final size:22
Alignment explanation
Indices: 37042426--37042489 Score: 56
Period size: 24 Copynumber: 2.8 Consensus size: 22
37042416 ATCTTTTTAT
37042426 ATATTTATGCGAACCCTAGGATG
1 ATATTTATGCGAACCCTA-GATG
** * *
37042449 AATATACATGTGAACCCTATATG
1 -ATATTTATGCGAACCCTAGATG
* *
37042472 TTATTTATGCAAACCCTA
1 ATATTTATGCGAACCCTA
37042490 CATGTAGTAA
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
22 13 0.42
23 3 0.10
24 15 0.48
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (22 bp):
ATATTTATGCGAACCCTAGATG
Found at i:37042489 original size:22 final size:23
Alignment explanation
Indices: 37042461--37042513 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
37042451 TATACATGTG
*
37042461 AACCCTATATGT--TATTTATGCA
1 AACCCTATATGTAGTA-ATATGCA
*
37042483 AACCCTACATGTAGTAATATGCA
1 AACCCTATATGTAGTAATATGCA
37042506 AACCCTAT
1 AACCCTAT
37042514 TTGCTTCTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 11 0.42
23 13 0.50
24 2 0.08
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (23 bp):
AACCCTATATGTAGTAATATGCA
Found at i:37046060 original size:15 final size:15
Alignment explanation
Indices: 37046040--37046071 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
37046030 CATTTCACTA
*
37046040 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
37046055 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
37046070 TT
1 TT
37046072 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:37047253 original size:19 final size:19
Alignment explanation
Indices: 37047229--37047268 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
37047219 ATTAATTTTG
37047229 ATCAAATAAAATT-AAATTA
1 ATCAAAT-AAATTAAAATTA
*
37047248 ATCAAATGAATTAAAATTA
1 ATCAAATAAATTAAAATTA
37047267 AT
1 AT
37047269 ATGATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (19 bp):
ATCAAATAAATTAAAATTA
Found at i:37069173 original size:27 final size:26
Alignment explanation
Indices: 37069113--37069177 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 26
37069103 GGTAAATTAA
*
37069113 AAATAAATACTTAAAATCATTTTATACT
1 AAATAAA-A-TTAAAATCATTTTATAAT
37069141 AAATAAGAATTAAAATCATATTTATAAT
1 AAATAA-AATTAAAATCAT-TTTATAAT
*
37069169 -GATAAAATT
1 AAATAAAATT
37069178 TATATATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 4 0.12
27 14 0.42
28 14 0.42
29 1 0.03
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (26 bp):
AAATAAAATTAAAATCATTTTATAAT
Found at i:37080150 original size:43 final size:43
Alignment explanation
Indices: 37080089--37080212 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 43
37080079 GGATTTTTGA
* *
37080089 TGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAACT
1 TGTGTTTACGAGTAAGACCACGTCTGGGACGTTGGCATCAACT
* * *
37080132 TGTGTTTACGAGTAAGACC-CTGTCTGGGAC-TGTGGCACCGATT
1 TGTGTTTACGAGTAAGACCAC-GTCTGGGACGT-TGGCATCAACT
** *
37080175 TGTGAATAC-ATGTAAGACCACGCCTGGGACGTTGGCAT
1 TGTGTTTACGA-GTAAGACCACGTCTGGGACGTTGGCAT
37080213 TGTACAAGCT
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
42 3 0.04
43 62 0.93
44 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (43 bp):
TGTGTTTACGAGTAAGACCACGTCTGGGACGTTGGCATCAACT
Found at i:37082890 original size:127 final size:127
Alignment explanation
Indices: 37082664--37082917 Score: 490
Period size: 127 Copynumber: 2.0 Consensus size: 127
37082654 AGTGAAACTC
*
37082664 TCTAGGTCCTTTATCTTTGGAGGCAACTTATTCATCAATGTTACTATGCACCCTTCAGTGAGAGC
1 TCTAGGTCCTTTATCTTTAGAGGCAACTTATTCATCAATGTTACTATGCACCCTTCAGTGAGAGC
*
37082729 AACAATCTCAAATTCTCCTAACCTATGTTTCTTCGACAATATATCTTTCATGAATTTCACGT
66 AACAATCTCAAATTCTCCCAACCTATGTTTCTTCGACAATATATCTTTCATGAATTTCACGT
37082791 TCTAGGTCCTTTATCTTTAGAGGCAACTTATTCATCAATGTTACTATGCACCCTTCAGTGAGAGC
1 TCTAGGTCCTTTATCTTTAGAGGCAACTTATTCATCAATGTTACTATGCACCCTTCAGTGAGAGC
37082856 AACAATCTCAAATTCTCCCAACCTATGTTTCTTCGACAATATATCTTTCATGAATTTCACGT
66 AACAATCTCAAATTCTCCCAACCTATGTTTCTTCGACAATATATCTTTCATGAATTTCACGT
37082918 AATTGGGCAT
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
127 125 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (127 bp):
TCTAGGTCCTTTATCTTTAGAGGCAACTTATTCATCAATGTTACTATGCACCCTTCAGTGAGAGC
AACAATCTCAAATTCTCCCAACCTATGTTTCTTCGACAATATATCTTTCATGAATTTCACGT
Found at i:37086204 original size:20 final size:23
Alignment explanation
Indices: 37086165--37086205 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
37086155 AATGCAATAT
37086165 TAAACATGCTAACTAAAATGTCC
1 TAAACATGCTAACTAAAATGTCC
37086188 TAAA-ATGC-AAC-AAAATGT
1 TAAACATGCTAACTAAAATGT
37086206 ACTTAAGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 4 0.22
23 4 0.22
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.24
Consensus pattern (23 bp):
TAAACATGCTAACTAAAATGTCC
Found at i:37086789 original size:20 final size:20
Alignment explanation
Indices: 37086764--37086805 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
37086754 ATATTTTAAT
*
37086764 TAGTTGTAATTCCCTAATTC
1 TAGTTGTAATCCCCTAATTC
37086784 TAGTTGTAATCCCCTAATTC
1 TAGTTGTAATCCCCTAATTC
37086804 TA
1 TA
37086806 TGATAGTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (20 bp):
TAGTTGTAATCCCCTAATTC
Found at i:37087596 original size:15 final size:15
Alignment explanation
Indices: 37087576--37087608 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
37087566 TTTAAAACCC
37087576 TCTCCCCATATTTCA
1 TCTCCCCATATTTCA
*
37087591 TCTCCCCATCTTTCA
1 TCTCCCCATATTTCA
37087606 TCT
1 TCT
37087609 TTCCTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.42, G:0.00, T:0.42
Consensus pattern (15 bp):
TCTCCCCATATTTCA
Found at i:37089114 original size:26 final size:25
Alignment explanation
Indices: 37089060--37089216 Score: 90
Period size: 26 Copynumber: 6.0 Consensus size: 25
37089050 ATAATACACA
* **
37089060 ATAAAACAATTTGAAATGAATGCCAT
1 ATAAAACAATTTAAAATGAAT-AAAT
37089086 ATAAAACAATTTAAAATGAATAAAGT
1 ATAAAACAATTTAAAATGAATAAA-T
* *
37089112 ATAAAATAGTTTAAAAT-AATAATAT
1 ATAAAACAATTTAAAATGAATAA-AT
* *
37089137 ATGAAAAAAAGCTTAAAAT-AAGT-AAT
1 AT-AAAACAA-TTTAAAATGAA-TAAAT
37089163 AATAAAA-AAGTTTAAAAT-AAGTAATAT
1 -ATAAAACAA-TTTAAAATGAA-TAA-AT
* * *
37089190 AGTAAAAGATTTTAAAATAAATAAAT
1 A-TAAAACAATTTAAAATGAATAAAT
37089216 A
1 A
37089217 AACAAGTTTG
Statistics
Matches: 110, Mismatches: 10, Indels: 22
0.77 0.07 0.15
Matches are distributed among these distances:
25 23 0.21
26 53 0.48
27 30 0.27
28 4 0.04
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.29
Consensus pattern (25 bp):
ATAAAACAATTTAAAATGAATAAAT
Found at i:37089152 original size:27 final size:26
Alignment explanation
Indices: 37089111--37089196 Score: 104
Period size: 25 Copynumber: 3.3 Consensus size: 26
37089101 ATGAATAAAG
* *
37089111 TATAAAATAGTTTAAAATAA-TAATA
1 TATAAAAAAGCTTAAAATAAGTAATA
37089136 TATGAAAAAAAGCTTAAAATAAGTAATA
1 TAT--AAAAAAGCTTAAAATAAGTAATA
*
37089164 -ATAAAAAAGTTTAAAATAAGTAATA
1 TATAAAAAAGCTTAAAATAAGTAATA
37089189 TAGTAAAA
1 TA-TAAAA
37089197 GATTTTAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
25 25 0.47
26 1 0.02
27 22 0.42
28 5 0.09
ACGTcount: A:0.62, C:0.01, G:0.08, T:0.29
Consensus pattern (26 bp):
TATAAAAAAGCTTAAAATAAGTAATA
Found at i:37089177 original size:25 final size:26
Alignment explanation
Indices: 37089084--37089209 Score: 127
Period size: 27 Copynumber: 4.8 Consensus size: 26
37089074 AATGAATGCC
37089084 ATATAAAACAA-TTTAAAATGAA-TAA-
1 ATATAAAA-AAGTTTAAAAT-AAGTAAT
*
37089109 AGTATAAAATAGTTTAAAATAA-TAAT
1 A-TATAAAAAAGTTTAAAATAAGTAAT
*
37089135 ATATGAAAAAAAGCTTAAAATAAGTAAT
1 ATAT--AAAAAAGTTTAAAATAAGTAAT
37089163 A-ATAAAAAAGTTTAAAATAAGTAAT
1 ATATAAAAAAGTTTAAAATAAGTAAT
* *
37089188 ATAGTAAAAGATTTTAAAATAA
1 ATA-TAAAAAAGTTTAAAATAA
37089210 ATAAATAAAC
Statistics
Matches: 87, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
25 32 0.37
26 17 0.20
27 33 0.38
28 5 0.06
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (26 bp):
ATATAAAAAAGTTTAAAATAAGTAAT
Found at i:37089203 original size:27 final size:27
Alignment explanation
Indices: 37089131--37089209 Score: 99
Period size: 25 Copynumber: 3.0 Consensus size: 27
37089121 TTTAAAATAA
* *
37089131 TAATATATGAAAAAAAGCTTAAAATAAG
1 TAATATA-GTAAAAAAGTTTAAAATAAG
37089159 TAATA-A-TAAAAAAGTTTAAAATAAG
1 TAATATAGTAAAAAAGTTTAAAATAAG
* *
37089184 TAATATAGTAAAAGATTTTAAAATAA
1 TAATATAGTAAAAAAGTTTAAAATAA
37089210 ATAAATAAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
25 22 0.49
26 1 0.02
27 17 0.38
28 5 0.11
ACGTcount: A:0.61, C:0.01, G:0.09, T:0.29
Consensus pattern (27 bp):
TAATATAGTAAAAAAGTTTAAAATAAG
Found at i:37089205 original size:52 final size:50
Alignment explanation
Indices: 37089096--37089225 Score: 136
Period size: 52 Copynumber: 2.5 Consensus size: 50
37089086 ATAAAACAAT
*
37089096 TTAAAATGAATAAAGTATAAAATAGTTTAAAATAATAATATATGAAAAAAAGC
1 TTAAAATAAATAAA-TA-AAAA-AGTTTAAAATAATAATATATGAAAAAAAGC
* * * **
37089149 TTAAAATAAGTAATAATAAAAAAGTTTAAAATAAGTAATATA-GTAAAAGATT
1 TTAAAATAAAT-A-AATAAAAAAGTTTAAAATAA-TAATATATGAAAAAAAGC
*
37089201 TTAAAATAAATAAATAAACAAGTTT
1 TTAAAATAAATAAATAAAAAAGTTT
37089226 GCAAAAAGGT
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
50 12 0.18
51 1 0.02
52 28 0.42
53 20 0.30
54 3 0.05
55 2 0.03
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (50 bp):
TTAAAATAAATAAATAAAAAAGTTTAAAATAATAATATATGAAAAAAAGC
Found at i:37090018 original size:17 final size:17
Alignment explanation
Indices: 37089996--37090034 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
37089986 AAGAGATAAC
37089996 AAAAATAGAGAAAAATA
1 AAAAATAGAGAAAAATA
* * *
37090013 AAAAATATAGAAGAGTA
1 AAAAATAGAGAAAAATA
37090030 AAAAA
1 AAAAA
37090035 GGATACTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (17 bp):
AAAAATAGAGAAAAATA
Found at i:37090927 original size:143 final size:143
Alignment explanation
Indices: 37090680--37091876 Score: 1513
Period size: 143 Copynumber: 8.4 Consensus size: 143
37090670 AAGATAGGAT
* * *
37090680 TGGTGGCATCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGAAGCTTTA
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTA
* ** * * * *
37090745 ATATGTTCCACTGCGACGCCAGTGAAATAAGATTCGCTGTCTTAAGTTTGCTCCGCTGCAACTTT
66 ATCTGTTCCACTGAAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTC
37090810 AGGGAGATAAGGC
131 AGGGAGATAAGGC
* * * * * * *
37090823 TGATGGCTTCAATATGCTCCACTGTAACTTTAAGAAGATAAGATCCGCCATAATTTGTAGTTTTC
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTA
* * *
37090888 ATCTGTTCCACTGAAACACCAGGGAAATAAGATTTGCTGTCTTCAGTCTGTTCCGCTGCAACTTC
66 ATCTGTTCCACTGAAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTC
*
37090953 AGGAAGATAAGGC
131 AGGGAGATAAGGC
*
37090966 TGGTGGCTTCAATATGCTCCACTGCAACTTCA-GAATGATAAGATCCGCCATAATTTGTAGCTTT
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAA-GATAAGATCCGCCATAATTTGTAGCTTT
** * * * * *
37091030 AATCTGTTATAATGCAACTCCAGGGAAATAAGATTCGCTGTGTTCAGTCTACTCCGCTGCAACTT
65 AATCTGTTCCACTGAAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTT
37091095 CAGGGAGATAAGGC
130 CAGGGAGATAAGGC
* * * *
37091109 TGGTGGCTTCAATCTACTCCACTACAACTTCGGGAAGATAAGATCAGCCATAATTTGTAGCTTTA
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTA
** * *
37091174 ATCTGTTCCACT-ACAACGCCAGGGAAATAAGATTTTCTGTCTTCAATCTGCTTCGCTGCAACTT
66 ATCTGTTCCACTGA-AACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTT
37091238 CAGGGAGATAAGGC
130 CAGGGAGATAAGGC
* * * * *
37091252 TAGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAAATCCACCATAATTTCTAGCTTTA
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTA
* * * * * *
37091317 ATCTGTTCAACT-ACAACGCCAGTGAAATAAGATTTGTTATCTTCAGTCTGCTCCGCTACAACTT
66 ATCTGTTCCACTGA-AACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTT
* *
37091381 TAGAGAGATAAGGC
130 CAGGGAGATAAGGC
* * * * *
37091395 TGGTGGCTTTAATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCACCATAATTTGTAGTTTTC
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTA
* * * * *
37091460 ATCTGTTCCACTGCAAGGCCAAGGAAATAAGATTCGTTGTCTTCAGTCTGTTCCGCTGCAACTTC
66 ATCTGTTCCACTGAAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTC
37091525 AGGGAGATAAGGC
131 AGGGAGATAAGGC
* * * *
37091538 TTGTGGCTTCAATTTGCTCCATTGCAACTTCAGGAAGATAAGATCAGCCATAATTTGTAGCTTTA
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTA
* * * * ** *
37091603 ATCTGTTCTATTGCAACGCCAGGGAAATTAGATTCAATGTCTTCAGTCTGCTCTGCTGC-ACTTC
66 ATCTGTTCCACTGAAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTC
37091667 AGGGAGATAAGGC
131 AGGGAGATAAGGC
* * * * * * *
37091680 TGGTGGCTTCAATCTTCTCCACTGTAACTTTAGAAAGATAAGATCTGTCATAATTTGTAGGTTTA
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTA
* * ** * * *
37091745 ATCTATTTCACT-ACAACGTTAGGGAAATAAGATTCGCTGTCTTCTGTGTGCTACGCTGCAACTT
66 ATCTGTTCCACTGA-AACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTT
*
37091809 TAGGGAGATAAGGC
130 CAGGGAGATAAGGC
* * * *
37091823 TGGTGGCTTTAATCTGCTCCACTACAACTTCAGGAAGATAAGATTCGTCATAAT
1 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAAT
37091877 GACTTCAATC
Statistics
Matches: 909, Mismatches: 139, Indels: 12
0.86 0.13 0.01
Matches are distributed among these distances:
142 120 0.13
143 786 0.86
144 3 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (143 bp):
TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTA
ATCTGTTCCACTGAAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTC
AGGGAGATAAGGC
Found at i:37091138 original size:44 final size:45
Alignment explanation
Indices: 37091072--37091292 Score: 142
Period size: 44 Copynumber: 4.8 Consensus size: 45
37091062 ATTCGCTGTG
* * *
37091072 TTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAG-GCTGGTGGC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGAGCTTGTGGC
* *
37091116 TTCAATCTACTCCACTACAACTTC-GGGAAGATAAGATCAGCCATAATTTGTAGC
1 TTCAATCTACTCCACTGCAACTTCAGGG-AGATAAG---AG-C-----TTGTGGC
* ** * ** * ** * *
37091170 TTTAATCTGTTCCACTACAACGCCAGGGAAATAAGATTTTCTGTC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGAGCTTGTGGC
* * * *
37091215 TTCAATCTGCTTCGCTGCAACTTCAGGGAGATAAG-GCTAGTGGC
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGAGCTTGTGGC
*
37091259 TTCAATCTACTCCACTGCAACTTCAGGAAGATAA
1 TTCAATCTACTCCACTGCAACTTCAGGGAGATAA
37091293 AATCCACCAT
Statistics
Matches: 132, Mismatches: 33, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
43 3 0.02
44 62 0.47
45 31 0.23
48 1 0.01
49 1 0.01
51 1 0.01
54 30 0.23
55 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (45 bp):
TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGAGCTTGTGGC
Found at i:37101303 original size:43 final size:42
Alignment explanation
Indices: 37101211--37101293 Score: 103
Period size: 45 Copynumber: 1.9 Consensus size: 42
37101201 CTTACGTATG
* *
37101211 ATCACTTATCATTTTTCCCTGATCAGATAAGTGTAGCTAAGCT
1 ATCACTTATCATTTTTCACTGATCAGATAAGTATAGC-AAGCT
* *
37101254 ACCACTTATCACTTTTTCAATTGATCAGATAAGTATAGCA
1 ATCACTTATCA-TTTTTC-ACTGATCAGATAAGTATAGCA
37101294 CTTATCACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 10 0.29
44 7 0.21
45 17 0.50
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (42 bp):
ATCACTTATCATTTTTCACTGATCAGATAAGTATAGCAAGCT
Found at i:37103025 original size:6 final size:6
Alignment explanation
Indices: 37103016--37103056 Score: 59
Period size: 6 Copynumber: 7.0 Consensus size: 6
37103006 TTGGCCTCTC
37103016 CTTTTT CTTTTT CTTTTT -TTTATT -TTTTT CTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTT-TT CTTTTT CTTTTT CTTTTT
37103057 AATTTTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.15
6 28 0.85
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (6 bp):
CTTTTT
Found at i:37103064 original size:23 final size:23
Alignment explanation
Indices: 37103017--37103064 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
37103007 TGGCCTCTCC
*
37103017 TTTTTCTTTTTCTTTTTTTTATT
1 TTTTTCTTTTTCTTTTTATTATT
37103040 TTTTTCTTTTTCTTTTTA--ATT
1 TTTTTCTTTTTCTTTTTATTATT
37103061 TTTT
1 TTTT
37103065 AAATGAAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 7 0.29
23 17 0.71
ACGTcount: A:0.06, C:0.08, G:0.00, T:0.85
Consensus pattern (23 bp):
TTTTTCTTTTTCTTTTTATTATT
Found at i:37105775 original size:19 final size:19
Alignment explanation
Indices: 37105751--37105805 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
37105741 TTGTGAGATT
37105751 TAATGCATATAATGCAATG
1 TAATGCATATAATGCAATG
37105770 TAATGCAATGATAATGC-ATG
1 TAATGC-AT-ATAATGCAATG
37105790 -AATGCA-ATGAATGCAA
1 TAATGCATAT-AATGCAA
37105806 AAAAAAGAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
16 2 0.06
17 5 0.16
18 2 0.06
19 11 0.34
20 5 0.16
21 7 0.22
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (19 bp):
TAATGCATATAATGCAATG
Found at i:37105801 original size:9 final size:9
Alignment explanation
Indices: 37105752--37105805 Score: 58
Period size: 9 Copynumber: 5.8 Consensus size: 9
37105742 TGTGAGATTT
37105752 AATGCATAT-
1 AATGCA-ATG
37105761 AATGCAATG
1 AATGCAATG
37105770 TAATGCAATG
1 -AATGCAATG
37105780 ATAATGC-ATG
1 --AATGCAATG
37105790 AATGCAATG
1 AATGCAATG
37105799 AATGCAA
1 AATGCAA
37105806 AAAAAAGAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
8 7 0.17
9 16 0.39
10 12 0.29
11 6 0.15
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.26
Consensus pattern (9 bp):
AATGCAATG
Found at i:37107667 original size:24 final size:24
Alignment explanation
Indices: 37107639--37108225 Score: 209
Period size: 26 Copynumber: 23.1 Consensus size: 24
37107629 ATAATATGTA
*
37107639 AAAAACAGTTTAAAGTAAATAATAT
1 AAAAA-AGTTTAAAATAAATAATAT
* *
37107664 AAAAAGGTTTAAAATAAATGATA-
1 AAAAAAGTTTAAAATAAATAATAT
* * *
37107687 AATGAAACAATTTAAAGTAAATAATAC
1 AA--AAA-AGTTTAAAATAAATAATAT
37107714 AAAAAAGTTTAAAATAAATAATATAT
1 AAAAAAGTTTAAAATAAAT-A-ATAT
*
37107740 GAAAAAAATTTAAAATAAATAATAT
1 -AAAAAAGTTTAAAATAAATAATAT
* * **
37107765 AGAAAATGGTTCAAAATAAACCATAT
1 A-AAAA-AGTTTAAAATAAATAATAT
* *
37107791 GAAAAAACTTATCATAAGT-AA-AATAT
1 -AAAAAAGTT-T-A-AAATAAATAATAT
* *
37107817 AAAACAGTTCGAAAAT--AT-ATAT
1 AAAAAAGTT-TAAAATAAATAATAT
* *
37107839 AAAGTAA-TTTAAAGTAAAGTAAATAT
1 AAA-AAAGTTTAAAATAAA-T-AATAT
* *
37107865 ATAATAGTTTAAAATAATATAATAAT
1 AAAAAAGTTTAAAATAA-ATAAT-AT
37107891 ATAAAAATGTTTAAAATAAATAATAT
1 A-AAAAA-GTTTAAAATAAATAATAT
****
37107917 ATGAATTTTTTTTAAAATAAATAATAT
1 A--AA-AAAGTTTAAAATAAATAATAT
* * * **
37107944 ACAAAATGGCTCAAAATAAACCATAT
1 A-AAAA-AGTTTAAAATAAATAATAT
*
37107970 GAAAAAACTTATCATAAAT-AA-AATAT
1 -AAAAAAGTT-T-A-AAATAAATAATAT
* *
37107996 AAAATAGTTCGAAAAT--AT-ATAT
1 AAAAAAGTT-TAAAATAAATAATAT
* *
37108018 AAAGCAA-TTTAAAGTAAATAATACAT
1 AAA-AAAGTTTAAAATAAATAAT--AT
* *
37108044 ATAATAGTTTAAAATAATATACA-AT
1 AAAAAAGTTTAAAATAA-ATA-ATAT
* * *
37108069 AAAACAGTTTGAAATGAATACCATAT
1 AAAAAAGTTTAAAATAAATA--ATAT
*
37108095 AAAACAA-TTTAAAATGAATAATGTAT
1 AAAA-AAGTTTAAAATAAATAA--TAT
*
37108121 AAAATAGTTTAAAAT-AATAATATAT
1 AAAAAAGTTTAAAATAAAT-A-ATAT
* *
37108146 GAAAAAAAGCTTAAAATAAGTAATAAT
1 --AAAAAAGTTTAAAATAAATAAT-AT
* *
37108173 AAAATAGTTTAAAATAAGTAATAT
1 AAAAAAGTTTAAAATAAATAATAT
*
37108197 ATGAAAATATTTTAAAATAAATAA-AT
1 A--AAAA-AGTTTAAAATAAATAATAT
37108223 AAA
1 AAA
37108226 CAACAAATTT
Statistics
Matches: 423, Mismatches: 82, Indels: 115
0.68 0.13 0.19
Matches are distributed among these distances:
21 8 0.02
22 20 0.05
23 14 0.03
24 42 0.10
25 86 0.20
26 140 0.33
27 92 0.22
28 21 0.05
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.30
Consensus pattern (24 bp):
AAAAAAGTTTAAAATAAATAATAT
Found at i:37107687 original size:27 final size:27
Alignment explanation
Indices: 37107656--37107763 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
37107646 GTTTAAAGTA
*
37107656 AATAATATAAAAAGGTTTAAAATAAAT
1 AATAATATAAAAAAGTTTAAAATAAAT
* * *
37107683 GATAA-ATGAAACAA-TTTAAAGT--A-
1 AATAATAT-AAAAAAGTTTAAAATAAAT
*
37107706 AATAATACAAAAAAGTTTAAAATAAAT
1 AATAATATAAAAAAGTTTAAAATAAAT
*
37107733 AAT-ATATGAAAAAAATTTAAAATAAAT
1 AATAATAT-AAAAAAGTTTAAAATAAAT
37107760 AATA
1 AATA
37107764 TAGAAAATGG
Statistics
Matches: 63, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
23 9 0.14
24 9 0.14
26 13 0.21
27 32 0.51
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (27 bp):
AATAATATAAAAAAGTTTAAAATAAAT
Found at i:37107701 original size:26 final size:25
Alignment explanation
Indices: 37107647--37107763 Score: 100
Period size: 24 Copynumber: 4.6 Consensus size: 25
37107637 TAAAAAACAG
*
37107647 TTTAAAGTAAATAAT--AT-AAAAA
1 TTTAAAATAAATAATAAATGAAAAA
*
37107669 GGTTTAAAATAAATGATAAATGAAACAA
1 --TTTAAAATAAATAATAAATGAAA-AA
* *
37107697 TTTAAAGTAAATAATACAA--AAAAG
1 TTTAAAATAAATAATA-AATGAAAAA
*
37107721 TTTAAAATAAATAATATATGAAAAAAA
1 TTTAAAATAAATAATAAATG--AAAAA
37107748 TTTAAAATAAATAATA
1 TTTAAAATAAATAATA
37107764 TAGAAAATGG
Statistics
Matches: 76, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.01
24 29 0.38
25 3 0.04
26 16 0.21
27 25 0.33
28 2 0.03
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (25 bp):
TTTAAAATAAATAATAAATGAAAAA
Done.