Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 118 of 141
Found at i:37687659 original size:7 final size:7
Alignment explanation
Indices: 37687647--37687676 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
37687637 GAAGAAGAAG
37687647 AAAAAGA
1 AAAAAGA
37687654 AAAAAGA
1 AAAAAGA
37687661 AAAAAGA
1 AAAAAGA
*
37687668 AATAAGA
1 AAAAAGA
37687675 AA
1 AA
37687677 TAAAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.03
Consensus pattern (7 bp):
AAAAAGA
Found at i:37688417 original size:16 final size:16
Alignment explanation
Indices: 37688360--37688409 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
37688350 TTTTTTACAT
37688360 TTTTTAATTTTAGA-AA
1 TTTTTAA-TTTAGATAA
* *
37688376 TATTTCATTT--ATAA
1 TTTTTAATTTAGATAA
37688390 TTTTTAATTTAGATAA
1 TTTTTAATTTAGATAA
37688406 TTTT
1 TTTT
37688410 AATATTAGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 1 0.04
14 10 0.37
15 3 0.11
16 13 0.48
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (16 bp):
TTTTTAATTTAGATAA
Found at i:37691597 original size:29 final size:28
Alignment explanation
Indices: 37691565--37691624 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
37691555 AAAAATGAAC
*
37691565 CAAATCAACATTTAATGTATAAAATTGCA
1 CAAATCAA-AGTTAATGTATAAAATTGCA
* * *
37691594 CAAAATTAAAGTTCATGTATAACATTGCA
1 C-AAATCAAAGTTAATGTATAAAATTGCA
37691623 CA
1 CA
37691625 TAGAATCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
28 1 0.04
29 19 0.73
30 6 0.23
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.30
Consensus pattern (28 bp):
CAAATCAAAGTTAATGTATAAAATTGCA
Found at i:37692374 original size:15 final size:15
Alignment explanation
Indices: 37692348--37692396 Score: 64
Period size: 14 Copynumber: 3.3 Consensus size: 15
37692338 AACACAATTA
*
37692348 AAAAACACTTCAAAAC
1 AAAAACA-TTCAAATC
37692364 AAAAACATTCAAATC
1 AAAAACATTCAAATC
*
37692379 -AAAACATACAAATC
1 AAAAACATTCAAATC
37692393 AAAA
1 AAAA
37692397 GAAACATCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 13 0.43
15 10 0.33
16 7 0.23
ACGTcount: A:0.65, C:0.20, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAAACATTCAAATC
Found at i:37692808 original size:14 final size:15
Alignment explanation
Indices: 37692789--37692827 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
37692779 TTGTTTCACT
37692789 GAAAATGACTTTC-G
1 GAAAATGACTTTCTG
*
37692803 GAAAAT-AATTTCTG
1 GAAAATGACTTTCTG
37692817 GAAAATGACTT
1 GAAAATGACTT
37692828 ACTTTTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 5 0.24
14 13 0.62
15 3 0.14
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (15 bp):
GAAAATGACTTTCTG
Found at i:37695759 original size:19 final size:20
Alignment explanation
Indices: 37695721--37695759 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
37695711 CTTTTCACAC
* *
37695721 TCATTTCATGCATTTGCATT
1 TCATTACATGCATATGCATT
37695741 TCATTACAT-CATATGCATT
1 TCATTACATGCATATGCATT
37695760 AAACACAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.26, C:0.21, G:0.08, T:0.46
Consensus pattern (20 bp):
TCATTACATGCATATGCATT
Found at i:37697947 original size:110 final size:107
Alignment explanation
Indices: 37697757--37698075 Score: 436
Period size: 109 Copynumber: 3.0 Consensus size: 107
37697747 AAAATTCAAG
* * *
37697757 AGGATATT-TGTCAATTTGGTT-AGACGAGAAATCGAAACCCAGCACCTTAGAGCACGTTCCTCG
1 AGGATATTAAGTC-ATTTGGTTGA-ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCG
37697820 AATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAAA
64 AATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAAA
* * *
37697864 AGGATACTT-AG-CTATTTGGTTGAACGAGAAAAATCGACACCCAGTACCTTAGGGCATGTTTTC
1 AGGATA-TTAAGTC-ATTTGGTTGAACGAG--AAATCGAAACCCAGTACCTTAGGGCACG-TTCC
37697927 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAAA
61 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTG-AAATTTTTGAAA
*
37697975 AGGATATTAAGTCATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTAAGTCATTTGGTTGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
*
37698040 TTTCCAAA---AAAACATTACCTTATTTTGAAATATTTT
66 TTTCCAAACGCAAAACATTGCCTTATTTTGAAAT-TTTT
37698076 CCTTTTTTGA
Statistics
Matches: 191, Mismatches: 12, Indels: 20
0.86 0.05 0.09
Matches are distributed among these distances:
104 4 0.02
105 22 0.12
107 20 0.10
108 20 0.10
109 50 0.26
110 40 0.21
111 34 0.18
112 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (107 bp):
AGGATATTAAGTCATTTGGTTGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAAA
Found at i:37698440 original size:19 final size:18
Alignment explanation
Indices: 37698403--37698445 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
37698393 AAATATGCAT
*
37698403 ATATATATATAATAAAAA
1 ATATATATATAAGAAAAA
* *
37698421 ATTATATATATTAGATAAA
1 A-TATATATATAAGAAAAA
37698440 ATATAT
1 ATATAT
37698446 GTAATGTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
ATATATATATAAGAAAAA
Found at i:37698542 original size:9 final size:9
Alignment explanation
Indices: 37698528--37698559 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
37698518 TAATGAAAAT
37698528 ATAATGATA
1 ATAATGATA
37698537 ATAATGATA
1 ATAATGATA
*
37698546 ATAATAATA
1 ATAATGATA
37698555 ATAAT
1 ATAAT
37698560 AGGGGAATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (9 bp):
ATAATGATA
Found at i:37699770 original size:18 final size:18
Alignment explanation
Indices: 37699733--37699775 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
37699723 TGAGCAAATG
37699733 TTCTTTCATTCTTTACGA
1 TTCTTTCATTCTTTACGA
* **
37699751 TTGTTTCATTCTTTTGGA
1 TTCTTTCATTCTTTACGA
37699769 TTCTTTC
1 TTCTTTC
37699776 TGCCAAACCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.19, G:0.09, T:0.60
Consensus pattern (18 bp):
TTCTTTCATTCTTTACGA
Found at i:37700689 original size:16 final size:16
Alignment explanation
Indices: 37700668--37700715 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
37700658 TTTGAGTCGG
**
37700668 AAAAATGACGAGATGA
1 AAAAATGAAAAGATGA
37700684 AAAAATGAAAAGATG-
1 AAAAATGAAAAGATGA
37700699 -AAAATGAAAA-ATGA
1 AAAAATGAAAAGATGA
37700713 AAA
1 AAA
37700716 CGTAAAATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 3 0.11
14 10 0.36
15 2 0.07
16 13 0.46
ACGTcount: A:0.67, C:0.02, G:0.19, T:0.12
Consensus pattern (16 bp):
AAAAATGAAAAGATGA
Found at i:37700702 original size:14 final size:13
Alignment explanation
Indices: 37700685--37700715 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
37700675 ACGAGATGAA
37700685 AAAATGAAAAGATG
1 AAAATGAAAA-ATG
37700699 AAAATGAAAAATG
1 AAAATGAAAAATG
37700712 AAAA
1 AAAA
37700716 CGTAAAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:37701995 original size:45 final size:44
Alignment explanation
Indices: 37701929--37702093 Score: 138
Period size: 45 Copynumber: 3.7 Consensus size: 44
37701919 TATTGGCATA
* * *
37701929 AAGTAGATCGAAGATAGCAGATCTTATCTTCCCATACTGGTGGCG
1 AAGTAGAT-GAAGAAAACAGATCTTGTCTTCCCATACTGGTGGCG
* **
37701974 AAGTAGATGAAAGAAAACAGATCTTGTCTT--TATA-TATTGGCATG
1 AAGTAGATG-AAGAAAACAGATCTTGTCTTCCCATACTGGTGGC--G
* * * * *
37702018 AAGTAGATCAGGGACAACAGATCTTGTCTCCCCATACTGGTGGTG
1 AAGTAGATGA-AGAAAACAGATCTTGTCTTCCCATACTGGTGGCG
* *
37702063 GAGTAGATTGAAGAAAGCAGATCTTGTCTTC
1 AAGTAGA-TGAAGAAAACAGATCTTGTCTTC
37702094 ATATATTGGC
Statistics
Matches: 92, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 26 0.28
45 48 0.52
46 5 0.05
47 4 0.04
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
AAGTAGATGAAGAAAACAGATCTTGTCTTCCCATACTGGTGGCG
Found at i:37701995 original size:89 final size:88
Alignment explanation
Indices: 37701894--37702137 Score: 319
Period size: 89 Copynumber: 2.7 Consensus size: 88
37701884 AGTAGGCTAG
* * * *
37701894 GAAGAAAGCAGATCCTGTCTTCATGTATTGGCATAAAGTAGATCGAAGATAGCAGATCTTATCTT
1 GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC-AAGATAGCAGATCTTGTCTT
37701959 CCCATACTGGTGGCGAAGTAGA-T
65 CCCATACTGGTGGCGAAGTAGATT
* * * * *
37701982 GAAAGAAAACAGATCTTGTCTTTATATATTGGCATGAAGTAGATCAGGGACAACAGATCTTGTCT
1 G-AAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCA-AGATAGCAGATCTTGTCT
* * *
37702047 CCCCATACTGGTGGTGGAGTAGATT
64 TCCCATACTGGTGGCGAAGTAGATT
* *
37702072 GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTGGATCAAAGATAGTAGATCTTGTCTT
1 GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC-AAGATAGCAGATCTTGTCTT
37702137 C
65 C
37702138 ATGTATTGGC
Statistics
Matches: 132, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
88 2 0.02
89 127 0.96
90 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (88 bp):
GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCAAGATAGCAGATCTTGTCTTC
CCATACTGGTGGCGAAGTAGATT
Found at i:37702175 original size:44 final size:44
Alignment explanation
Indices: 37701894--37702164 Score: 228
Period size: 44 Copynumber: 6.1 Consensus size: 44
37701884 AGTAGGCTAG
* * *
37701894 GAAGAAAGCAGATCCTGTCTTCATGTATTGGCATAAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
* * **
37701938 GAAGATAGCAGATCTTATCTTCCCATACTGGTGGC--GAAGTAGAT-
1 GAAGAAAGCAGATCTTGTCTT--CATA-TATTGGCATGAAGTAGATC
* *
37701982 GAAAGAAAACAGATCTTGTCTTTATATATTGGCATGAAGTAGATC
1 G-AAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
* * ** * ** * *
37702027 -AGGGACAA-CAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATT
1 GA-AGA-AAGCAGATCTTGTCTTCATATATTGG-CATGAAGTAGATC
*
37702072 GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTGGATC
1 GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
* * * * *
37702116 AAAGATAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
37702160 GAAGA
1 GAAGA
37702165 TTACAGATCT
Statistics
Matches: 175, Mismatches: 40, Indels: 24
0.73 0.17 0.10
Matches are distributed among these distances:
42 5 0.03
43 4 0.02
44 100 0.57
45 57 0.33
46 4 0.02
47 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (44 bp):
GAAGAAAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATC
Found at i:37702306 original size:132 final size:132
Alignment explanation
Indices: 37702154--37703031 Score: 1648
Period size: 132 Copynumber: 6.6 Consensus size: 132
37702144 TGGCGTGAAG
* * * * *
37702154 TAGATCGAAGATTACAGATCTTATCTCCTTAAGCAGTAGTGGAACAGATCGAAGATGGCGGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
* * * * * *
37702219 TACCTCCCTGAGGATACAGTGGAGTACATTGAAGCCAGTAATTCTATATCCCTGGGCAGCAGTGG
66 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
37702284 AA
131 AA
37702286 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
37702351 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
66 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
37702416 AA
131 AA
37702418 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
37702483 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
66 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
37702548 AA
131 AA
37702550 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
37702615 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
66 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
37702680 AA
131 AA
37702682 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
37702747 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
66 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
37702812 AA
131 AA
37702814 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
37702879 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
66 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
37702944 AA
131 AA
37702946 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
37703011 TACCTTCCTGAGGTTAGTAAT
66 TACCTTCCTGAGGTTA-TAAT
37703032 TCTATTCCCT
Statistics
Matches: 734, Mismatches: 11, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
132 730 0.99
133 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
AA
Found at i:37702892 original size:396 final size:393
Alignment explanation
Indices: 37702154--37703157 Score: 1659
Period size: 396 Copynumber: 2.6 Consensus size: 393
37702144 TGGCGTGAAG
* * * * *
37702154 TAGATCGAAGATTACAGATCTTATCTCCTTAAGCAGTAGTGGAACAGATCGAAGATGGCGGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
* * *
37702219 TACCTCCCTGAGGATACAGTGGAGTACATTGAAGCCAGTAATTCTATATCCCTGGGCAGCAGTGG
66 TACCTTCCTGAGG-TATA-TGGAGTACATTGAAGCCAGTAATTCTATCT-CCTGGGCAGCAGTGG
37702284 AATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGAT
128 AATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGAT
37702349 TTTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGT
193 TTTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGT
37702414 GGAATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAG
258 GGAATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAG
37702479 ATTTTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCA
323 ATTTTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCA
37702544 GTGGAA
388 GTGGAA
37702550 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
37702615 TACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGG
66 TACCTTCCTGAGG-TAT-ATGGAGTACATTGAAGCCAGTAATTCTATCTCC-TGGGCAGCAGTGG
37702680 AATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGAT
128 AATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGAT
37702745 TTTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGT
193 TTTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGT
37702810 GGAATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAG
258 GGAATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAG
37702875 ATTTTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCA
323 ATTTTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCA
37702940 GTGGAA
388 GTGGAA
37702946 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
* *
37703011 TACCTTCCTGAGG--T-T--AGTA-ATT-----C--T-A---T-TC-CCTAGGCAACAGTGGAAT
66 TACCTTCCTGAGGTATATGGAGTACATTGAAGCCAGTAATTCTATCTCCTGGGCAGCAGTGGAAT
* * * *
37703057 AGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTAGATTTT
131 AGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTTT
* * * *
37703122 ACCTCCCTGAGGTTACAGTAGAGTACATTGAAGCCA
196 ACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCA
37703158 ATCCTATCTC
Statistics
Matches: 587, Mismatches: 19, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
374 107 0.18
375 2 0.00
376 2 0.00
377 1 0.00
380 1 0.00
381 1 0.00
383 1 0.00
388 3 0.01
389 4 0.01
391 1 0.00
393 1 0.00
395 2 0.00
396 460 0.78
397 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (393 bp):
TAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTT
TACCTTCCTGAGGTATATGGAGTACATTGAAGCCAGTAATTCTATCTCCTGGGCAGCAGTGGAAT
AGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATTTT
ACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTGGA
ATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAGTGGAGCAGATCGAAGATGGCAGATT
TTACCTTCCTGAGGTTATAATGGAGTACATTGAAGCCAGTAATTCTATCTCCTTGGGCAGCAGTG
GAA
Found at i:37703131 original size:110 final size:111
Alignment explanation
Indices: 37702915--37703136 Score: 365
Period size: 110 Copynumber: 2.0 Consensus size: 111
37702905 CATTGAAGCC
* * *
37702915 AGTAATTCTATCTCCTTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCATAAGC
1 AGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCATAAGC
* *
37702980 AGAAGTGGAGCAGATCGAAGATGGCAGATTTTACCTTCCTGAGGTT
66 AGAAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
*
37703026 AGTAATTCTAT-TCCCTAGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGC
1 AGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCATAAGC
* *
37703090 AGTAGTGGAGCAGATCAAAGATGGTAGATTTTACCTCCCTGAGGTT
66 AGAAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
37703136 A
1 A
37703137 CAGTAGAGTA
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
110 92 0.89
111 11 0.11
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (111 bp):
AGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCATAAGC
AGAAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
Found at i:37704654 original size:3 final size:3
Alignment explanation
Indices: 37704646--37704678 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
37704636 TTATACTATG
*
37704646 ATT ATT ATT ATT ATT ATT ATT ATT ATT TTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
37704679 CATACATGCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
ATT
Found at i:37706241 original size:40 final size:40
Alignment explanation
Indices: 37706197--37706307 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
37706187 GTTTGGATAA
*
37706197 AAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTTAC-GT
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCG-TTTACAGT
* *
37706237 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGTTTCCAGT
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTACAGT
* *
37706277 AAAGCGCCGCTAAAAAT-TAGCATTAGCGGCG
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCG
37706308 GTTTTTTGGA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 17 0.27
40 47 0.73
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTACAGT
Found at i:37706331 original size:39 final size:40
Alignment explanation
Indices: 37706197--37706331 Score: 148
Period size: 40 Copynumber: 3.4 Consensus size: 40
37706187 GTTTGGATAA
* * *
37706197 AAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTTACGT
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTAAGT
* **
37706237 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGTTTCCAGT
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTAAGT
* * ** *
37706277 AAAGCGCCGCTAAAAAT-TAGCATTAGCGGCGGTTTTTTGG
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGC-GTTTTAAGT
37706317 AAAACGCCGC-AAAAA
1 AAAACGCCGCTAAAAA
37706332 GTCTAAGCCC
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
39 17 0.21
40 63 0.79
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTAAGT
Found at i:37706420 original size:41 final size:41
Alignment explanation
Indices: 37706365--37706520 Score: 240
Period size: 41 Copynumber: 3.8 Consensus size: 41
37706355 TGTACCTTTT
*
37706365 AGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTT
1 AGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC
*
37706406 AGATCTTTAGCGGCGATTTTGAGAAAGCGCCGCTAATGCTC
1 AGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC
* * * *
37706447 ATATATTTAGCGGCATTTTTTAGAAAGCGCCGCTAATGCTC
1 AGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC
* *
37706488 AGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
1 AGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGC
37706521 AAAAACATTT
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (41 bp):
AGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC
Found at i:37707798 original size:25 final size:24
Alignment explanation
Indices: 37707761--37707807 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
37707751 TATAAAAAAC
37707761 AAAATAAAAAATTTTTAGCATAGT
1 AAAATAAAAAATTTTTAGCATAGT
* *
37707785 AAAATGAAATAATTTTTTGCATA
1 AAAAT-AAAAAATTTTTAGCATA
37707808 AGCAATAGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36
Consensus pattern (24 bp):
AAAATAAAAAATTTTTAGCATAGT
Found at i:37710539 original size:42 final size:43
Alignment explanation
Indices: 37710400--37710666 Score: 342
Period size: 43 Copynumber: 6.3 Consensus size: 43
37710390 TATATGTTTT
* *
37710400 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* * * * *
37710443 TAGCGGCGTTTGTGGGATAAGCGTCGCTAAAGATCTTGAGCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* *
37710486 TAGCGGCGTTTGT-GTAAAAGCACCGCTAAAGGTTC-TGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG-TCATGATCTA
* * *
37710528 TGGCGGAGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* * * *
37710571 TAGCGACGTTTGT-GTAAAAGCGCCGCTAAAGCTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* *
37710613 TAGCGTCGTTTGTGGGAAAAGCGCCGCTAAATGTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
37710656 TAGCGGCGTTT
1 TAGCGGCGTTT
37710667 ATTTCTAAAA
Statistics
Matches: 192, Mismatches: 28, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
42 71 0.37
43 121 0.63
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
Found at i:37710544 original size:85 final size:84
Alignment explanation
Indices: 37710400--37710666 Score: 356
Period size: 85 Copynumber: 3.1 Consensus size: 84
37710390 TATATGTTTT
* * * *
37710400 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAG-TCATGACCTATAGCGGCGTTTGTGGGATAAG
1 TAGCGGCGTTTGT-GTAAAAGCGCCGCTAAAGGTTC-TGATCTATAGCGGCGTTTGTGGGAAAAG
* *
37710464 CGTCGCTAAAGATCTTGAGCTA
64 CGCCGCTAAAG-TCTTGATCTA
* * *
37710486 TAGCGGCGTTTGTGTAAAAGCACCGCTAAAGGTTCTGATCTATGGCGGAGTTTGTGGGAAAAGCG
1 TAGCGGCGTTTGTGTAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
37710551 CCGCTAAAGGTCTTGATCTA
66 CCGCTAAA-GTCTTGATCTA
* * * *
37710571 TAGCGACGTTTGTGTAAAAGCGCCGCTAAAGCTCCTGATCTATAGCGTCGTTTGTGGGAAAAGCG
1 TAGCGGCGTTTGTGTAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
*
37710636 CCGCTAAATGTCATGATCTA
66 CCGCTAAA-GTCTTGATCTA
37710656 TAGCGGCGTTT
1 TAGCGGCGTTT
37710667 ATTTCTAAAA
Statistics
Matches: 160, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
85 144 0.90
86 16 0.10
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (84 bp):
TAGCGGCGTTTGTGTAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
CCGCTAAAGTCTTGATCTA
Found at i:37710640 original size:128 final size:128
Alignment explanation
Indices: 37710400--37710666 Score: 358
Period size: 128 Copynumber: 2.1 Consensus size: 128
37710390 TATATGTTTT
* *
37710400 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTATAGCGGCGTTTGTGGGATAAGC
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTATAGCGACGTTTGTGGGAAAAGC
* * *
37710465 GTCGCTAAAGATCTTGAGCTATAGCGGCGTTTGTGTAAAAGCACCGCTAAAGGTTC-TGATCTA
66 GCCGCTAAAGATCCTGAGCTATAGCGGCGTTTGTGGAAAAGCACCGCTAAAGG-TCATGATCTA
* * * * * *
37710528 TGGCGGAGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGATCTATAGCGACGTTTGT-GTAAAAGC
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTATAGCGACGTTTGTGGGAAAAGC
* * * * *
37710592 GCCGCTAAAGCTCCTGATCTATAGCGTCGTTTGTGGGAAAAGCGCCGCTAAATGTCATGATCTA
66 GCCGCTAAAGATCCTGAGCTATAGCGGCGTTTGT-GGAAAAGCACCGCTAAAGGTCATGATCTA
37710656 TAGCGGCGTTT
1 TAGCGGCGTTT
37710667 ATTTCTAAAA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
127 37 0.31
128 82 0.69
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (128 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTATAGCGACGTTTGTGGGAAAAGC
GCCGCTAAAGATCCTGAGCTATAGCGGCGTTTGTGGAAAAGCACCGCTAAAGGTCATGATCTA
Found at i:37710773 original size:21 final size:21
Alignment explanation
Indices: 37710747--37710806 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
37710737 TTAGCGGCGT
*
37710747 TAAAAAGCGCCGCTAAAAGCA
1 TAAAAAACGCCGCTAAAAGCA
37710768 TAAAAAACGCCGCTAAAAGCA
1 TAAAAAACGCCGCTAAAAGCA
37710789 TAAAAAACGCCGCTAAAA
1 TAAAAAACGCCGCTAAAA
37710807 ACTTGTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.52, C:0.23, G:0.15, T:0.10
Consensus pattern (21 bp):
TAAAAAACGCCGCTAAAAGCA
Found at i:37710953 original size:23 final size:23
Alignment explanation
Indices: 37710927--37710973 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
37710917 AAGCAAAGTC
37710927 TGAACTATAAATAGGGATCCACT
1 TGAACTATAAATAGGGATCCACT
*
37710950 TGAACTATAAATAGGGATTCACT
1 TGAACTATAAATAGGGATCCACT
37710973 T
1 T
37710974 TCTAACATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (23 bp):
TGAACTATAAATAGGGATCCACT
Found at i:37711813 original size:9 final size:9
Alignment explanation
Indices: 37711799--37711826 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
37711789 TATAGTTTGA
37711799 TATTCGAAT
1 TATTCGAAT
37711808 TATTCGAAT
1 TATTCGAAT
37711817 TATTCGAAT
1 TATTCGAAT
37711826 T
1 T
37711827 CGAAAACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37714157 original size:22 final size:22
Alignment explanation
Indices: 37714131--37714175 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
37714121 TTTCTGGGTC
*
37714131 TCCCACTCTTTTACGTTAATGT
1 TCCCACTCTTTTACGTCAATGT
37714153 TCCCACTCTTTTACGTCAATGT
1 TCCCACTCTTTTACGTCAATGT
37714175 T
1 T
37714176 TTCTTTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.09, T:0.44
Consensus pattern (22 bp):
TCCCACTCTTTTACGTCAATGT
Found at i:37717614 original size:15 final size:15
Alignment explanation
Indices: 37717596--37717638 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
37717586 TTATTTAATA
37717596 TTTAATATTTTACTT
1 TTTAATATTTTACTT
* *
37717611 TTTATTATTTTATTT
1 TTTAATATTTTACTT
*
37717626 TATTAAAATTTTA
1 T-TTAATATTTTA
37717639 AAAAACAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTAATATTTTACTT
Found at i:37717706 original size:18 final size:18
Alignment explanation
Indices: 37717672--37717729 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
37717662 TAATGTTTAT
*
37717672 TTATATATTAT-TATAAA
1 TTATATAATATATATAAA
37717689 TTATATAATATATATAAA
1 TTATATAATATATATAAA
* *
37717707 TAAAATAATATATTATAACA
1 TTATATAATATA-TATAA-A
37717727 TTA
1 TTA
37717730 ACAGAAGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.29
18 16 0.47
19 5 0.15
20 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TTATATAATATATATAAA
Found at i:37719330 original size:11 final size:11
Alignment explanation
Indices: 37719316--37719363 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
37719306 ATATCCGAAC
37719316 AATAATAACAA
1 AATAATAACAA
*
37719327 AATAATAGCAA
1 AATAATAACAA
* *
37719338 CATAATAATAA
1 AATAATAACAA
**
37719349 AATGGTAACAA
1 AATAATAACAA
37719360 AATA
1 AATA
37719364 GGGAGAAAAC
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.21
Consensus pattern (11 bp):
AATAATAACAA
Found at i:37723450 original size:21 final size:23
Alignment explanation
Indices: 37723417--37723461 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
37723407 CCCATTTTTA
*
37723417 TTGATGTACATTTAAAAAT-AGT
1 TTGATGTAAATTTAAAAATGAGT
37723439 TTGA-GTAAATTTAAAAATGAGT
1 TTGATGTAAATTTAAAAATGAGT
37723461 T
1 T
37723462 AAGGACCCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (23 bp):
TTGATGTAAATTTAAAAATGAGT
Found at i:37724183 original size:23 final size:21
Alignment explanation
Indices: 37724141--37724183 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
37724131 GAATAATAGT
*
37724141 AATACAAATAACAAATACAAC
1 AATACAAATAACAAAGACAAC
*
37724162 AATACGAATATAACAACGACAA
1 AATAC-AA-ATAACAAAGACAA
37724184 TGCATATACT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 2 0.11
23 11 0.61
ACGTcount: A:0.63, C:0.19, G:0.05, T:0.14
Consensus pattern (21 bp):
AATACAAATAACAAAGACAAC
Found at i:37724311 original size:20 final size:19
Alignment explanation
Indices: 37724274--37724313 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
37724264 AATAATATGC
*
37724274 ACAAATCAATATACATAAA
1 ACAAATCAATATAAATAAA
*
37724293 ACAAATGAACTATAAATAAA
1 ACAAATCAA-TATAAATAAA
37724313 A
1 A
37724314 TGAAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.65, C:0.12, G:0.03, T:0.20
Consensus pattern (19 bp):
ACAAATCAATATAAATAAA
Found at i:37725566 original size:17 final size:16
Alignment explanation
Indices: 37725546--37725580 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
37725536 GCTGAAAATT
37725546 TTTAATTTGTGGGCTTG
1 TTTAATTT-TGGGCTTG
*
37725563 TTTAGTTTTGGGCTTG
1 TTTAATTTTGGGCTTG
37725579 TT
1 TT
37725581 GGGTTAGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.09, C:0.06, G:0.29, T:0.57
Consensus pattern (16 bp):
TTTAATTTTGGGCTTG
Found at i:37727677 original size:26 final size:26
Alignment explanation
Indices: 37727648--37727698 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
37727638 ATTTTAAATC
37727648 AATAAAATTAACACAACTTTT-TTTAA
1 AATAAAATTAACACAA-TTTTGTTTAA
*
37727674 AATAAAATTAGCACAATTTTGTTTA
1 AATAAAATTAACACAATTTTGTTTA
37727699 TTCTAGCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.47, C:0.10, G:0.04, T:0.39
Consensus pattern (26 bp):
AATAAAATTAACACAATTTTGTTTAA
Found at i:37740329 original size:15 final size:15
Alignment explanation
Indices: 37740305--37740336 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
37740295 TATACATGCA
*
37740305 AAATATAAAAGACAT
1 AAATACAAAAGACAT
37740320 AAATACAAAAGACAT
1 AAATACAAAAGACAT
37740335 AA
1 AA
37740337 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:37745010 original size:13 final size:13
Alignment explanation
Indices: 37744992--37745017 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37744982 TTTTGAAAGT
37744992 TAGTAAATTTTTA
1 TAGTAAATTTTTA
37745005 TAGTAAATTTTTA
1 TAGTAAATTTTTA
37745018 GATGTTATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TAGTAAATTTTTA
Found at i:37745620 original size:25 final size:25
Alignment explanation
Indices: 37745586--37745644 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
37745576 AACTTTAGCA
37745586 TGCTCTCTGATTATTAGCACATCAG
1 TGCTCTCTGATTATTAGCACATCAG
* *
37745611 TGCTCTCTGATTTTTAGCACGTCAG
1 TGCTCTCTGATTATTAGCACATCAG
37745636 TGCTCTCTG
1 TGCTCTCTG
37745645 TTTAGCAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.39
Consensus pattern (25 bp):
TGCTCTCTGATTATTAGCACATCAG
Found at i:37745651 original size:22 final size:22
Alignment explanation
Indices: 37745599--37745690 Score: 103
Period size: 22 Copynumber: 4.0 Consensus size: 22
37745589 TCTCTGATTA
*
37745599 TTAGCACATCAGTGCTCTCTGATTT
1 TTAGCACTTCAGTGCTCTCTG---T
*
37745624 TTAGCACGTCAGTGCTCTCTGT
1 TTAGCACTTCAGTGCTCTCTGT
* *
37745646 TTAGCAATTCTGTGCTCTCTGT
1 TTAGCACTTCAGTGCTCTCTGT
* *
37745668 TTAGCACTTTAGTGCTATCTGT
1 TTAGCACTTCAGTGCTCTCTGT
37745690 T
1 T
37745691 CATTAGTGCA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
22 39 0.66
25 20 0.34
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.42
Consensus pattern (22 bp):
TTAGCACTTCAGTGCTCTCTGT
Found at i:37747983 original size:27 final size:28
Alignment explanation
Indices: 37747902--37747983 Score: 64
Period size: 27 Copynumber: 2.9 Consensus size: 28
37747892 ATGGAATTAT
**
37747902 TATTTAATATATTGTTA-TTTATTTTAAC
1 TATTTAATAT-TTAATATTTTATTTTAAC
*
37747930 T-TTAAATATTATCACATATTATT-TTTTAA-
1 TATTTAATATT-T-A-ATATT-TTATTTTAAC
37747959 TATTTAATATTTAATATTTTATTTT
1 TATTTAATATTTAATATTTTATTTT
37747984 TAGCTATAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 15
0.69 0.06 0.24
Matches are distributed among these distances:
26 3 0.07
27 17 0.40
28 2 0.05
29 4 0.09
30 15 0.35
31 2 0.05
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (28 bp):
TATTTAATATTTAATATTTTATTTTAAC
Found at i:37747985 original size:14 final size:14
Alignment explanation
Indices: 37747952--37747985 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
37747942 CACATATTAT
37747952 TTTTTAATATTTAA
1 TTTTTAATATTTAA
* *
37747966 TATTTAATATTTTA
1 TTTTTAATATTTAA
37747980 TTTTTA
1 TTTTTA
37747986 GCTATAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTAATATTTAA
Found at i:37756271 original size:6 final size:6
Alignment explanation
Indices: 37756237--37756281 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
37756227 CACAACACCT
* **
37756237 TAACAG TAATCAG TAACGG TAGTAG TAACAG TAACAG TAACAG TA
1 TAACAG TAA-CAG TAACAG TAACAG TAACAG TAACAG TAACAG TA
37756282 TTCAACAAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.22
Consensus pattern (6 bp):
TAACAG
Found at i:37756619 original size:21 final size:20
Alignment explanation
Indices: 37756594--37756651 Score: 50
Period size: 20 Copynumber: 2.9 Consensus size: 20
37756584 ATGCAGTACA
37756594 CATAACAATATTCAGTAACTT
1 CATAACAATATTCAGTAAC-T
37756615 CATAATTC-A-ATTCAGT-ACT
1 CATAA--CAATATTCAGTAACT
*
37756634 CAAAAACAATATTCAGTA
1 C-ATAACAATATTCAGTA
37756652 TTCCATAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 12
0.70 0.02 0.28
Matches are distributed among these distances:
18 1 0.03
19 3 0.10
20 12 0.40
21 12 0.40
22 1 0.03
23 1 0.03
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (20 bp):
CATAACAATATTCAGTAACT
Found at i:37756659 original size:40 final size:41
Alignment explanation
Indices: 37756580--37756675 Score: 128
Period size: 40 Copynumber: 2.4 Consensus size: 41
37756570 AATTTCACAG
* * *
37756580 TTCAATGCAGTACAC-ATAACAATATTCAGTAACTTCATAA
1 TTCAATTCAGTACTCAAAAACAATATTCAGTAACTTCATAA
37756620 TTCAATTCAGTACTCAAAAACAATATTCAGT-A-TTCCATAA
1 TTCAATTCAGTACTCAAAAACAATATTCAGTAACTT-CATAA
37756660 TTCAATTCAGTA-TCAA
1 TTCAATTCAGTACTCAA
37756676 TCTCAATTTC
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
39 6 0.12
40 31 0.61
41 14 0.27
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.32
Consensus pattern (41 bp):
TTCAATTCAGTACTCAAAAACAATATTCAGTAACTTCATAA
Found at i:37758498 original size:16 final size:16
Alignment explanation
Indices: 37758477--37758510 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
37758467 CATTTCACTA
*
37758477 TTCTATCTTTTGTATT
1 TTCTATCTTTTATATT
37758493 TTCTATCTTTTATATT
1 TTCTATCTTTTATATT
37758509 TT
1 TT
37758511 GCATGAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.03, T:0.71
Consensus pattern (16 bp):
TTCTATCTTTTATATT
Found at i:37765476 original size:27 final size:27
Alignment explanation
Indices: 37765416--37765477 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
37765406 TAAGTAAATA
*
37765416 AATAAATTATTATATATTAGTTTATTG
1 AATAAATTATTATATATTAGTTTAATG
* *
37765443 AAGAAATTATTATATA-TATTATTAATG
1 AATAAATTATTATATATTAGT-TTAATG
*
37765470 TATAAATT
1 AATAAATT
37765478 CATAAACTAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (27 bp):
AATAAATTATTATATATTAGTTTAATG
Found at i:37770693 original size:21 final size:21
Alignment explanation
Indices: 37770667--37770706 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
37770657 TGGAGGAAGT
*
37770667 GTTTTCAAACAGTATTACTAC
1 GTTTTCAAACAGCATTACTAC
*
37770688 GTTTTCAGACAGCATTACT
1 GTTTTCAAACAGCATTACT
37770707 GCATTTTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (21 bp):
GTTTTCAAACAGCATTACTAC
Found at i:37770713 original size:21 final size:21
Alignment explanation
Indices: 37770668--37770714 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
37770658 GGAGGAAGTG
* *
37770668 TTTTCAAACAGTATTACTACG
1 TTTTCAAACAGCATTACTACA
* *
37770689 TTTTCAGACAGCATTACTGCA
1 TTTTCAAACAGCATTACTACA
37770710 TTTTC
1 TTTTC
37770715 GGTGATTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (21 bp):
TTTTCAAACAGCATTACTACA
Found at i:37774581 original size:17 final size:18
Alignment explanation
Indices: 37774553--37774587 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
37774543 GCTTGACCTC
37774553 AAATTATAGTTTAATATT
1 AAATTATAGTTTAATATT
37774571 AAATT-TAGTTTAATATT
1 AAATTATAGTTTAATATT
37774588 TGTCTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (18 bp):
AAATTATAGTTTAATATT
Found at i:37780213 original size:61 final size:61
Alignment explanation
Indices: 37780138--37780260 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
37780128 ATTAAGTTAA
37780138 AATTCATTTGTATAGATCTAGATAGACCTAGTACGGAATTGGATTGAGGAAAAGAAAAAGT
1 AATTCATTTGTATAGATCTAGATAGACCTAGTACGGAATTGGATTGAGGAAAAGAAAAAGT
37780199 AATTCATTTGTATAGATCTAGATAGACCTAGTACGGAATTGGATTGAGGAAAAGAAAAAGT
1 AATTCATTTGTATAGATCTAGATAGACCTAGTACGGAATTGGATTGAGGAAAAGAAAAAGT
37780260 A
1 A
37780261 TCGGATTAGT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (61 bp):
AATTCATTTGTATAGATCTAGATAGACCTAGTACGGAATTGGATTGAGGAAAAGAAAAAGT
Found at i:37780565 original size:25 final size:25
Alignment explanation
Indices: 37780526--37780607 Score: 101
Period size: 25 Copynumber: 3.3 Consensus size: 25
37780516 CAGATCTTAT
* *
37780526 GAGCGTCCCGATATTTGGCTCTCAC
1 GAGCTTCCTGATATTTGGCTCTCAC
* * *
37780551 GAGCTTCCTGTTATTTGGCCCTTAC
1 GAGCTTCCTGATATTTGGCTCTCAC
* *
37780576 GAGCTTCCTGATAATTGGCTCTCAT
1 GAGCTTCCTGATATTTGGCTCTCAC
37780601 GAGCTTC
1 GAGCTTC
37780608 TCGATTAATG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.16, C:0.28, G:0.22, T:0.34
Consensus pattern (25 bp):
GAGCTTCCTGATATTTGGCTCTCAC
Found at i:37780769 original size:25 final size:25
Alignment explanation
Indices: 37780714--37780781 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
37780704 TCTCGATAAC
* * *
37780714 TGGCTCGCAAGAGCTTCCCTTTATA
1 TGGCTCACAAGAGCTTCCCGTTACA
** *
37780739 CAGCTCACATGAGCTTCCCGTTACA
1 TGGCTCACAAGAGCTTCCCGTTACA
*
37780764 TGGCTCAGAAGAGCTTCC
1 TGGCTCACAAGAGCTTCC
37780782 TAATTACATG
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (25 bp):
TGGCTCACAAGAGCTTCCCGTTACA
Found at i:37785867 original size:17 final size:17
Alignment explanation
Indices: 37785845--37785878 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37785835 GGTTAATGAA
37785845 CAATTTTAGAATTTTGT
1 CAATTTTAGAATTTTGT
* *
37785862 CAATTTTTGAGTTTTGT
1 CAATTTTAGAATTTTGT
37785879 TTTCAACTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.56
Consensus pattern (17 bp):
CAATTTTAGAATTTTGT
Found at i:37788619 original size:28 final size:27
Alignment explanation
Indices: 37788588--37788647 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
37788578 TTTAAAGCAC
37788588 AAAAGTATATATAAACATAAATATT-TAAA
1 AAAAGTATATA-AAA-ATAAA-ATTATAAA
*
37788617 AAAAGTATCATAAAAATAAAATTATTAA
1 AAAAGTAT-ATAAAAATAAAATTATAAA
37788645 AAA
1 AAA
37788648 TATATAGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 3 0.11
28 11 0.39
29 11 0.39
30 3 0.11
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (27 bp):
AAAAGTATATAAAAATAAAATTATAAA
Found at i:37788638 original size:29 final size:29
Alignment explanation
Indices: 37788588--37788647 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
37788578 TTTAAAGCAC
37788588 AAAAGTATATATAAACATAAA-TATTTAAA
1 AAAAGTATATATAAACATAAATTA-TTAAA
37788617 AAAAGTATCATA-AAA-ATAAAATTATTAAA
1 AAAAGTAT-ATATAAACAT-AAATTATTAAA
37788646 AA
1 AA
37788648 TATATAGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
28 2 0.07
29 21 0.75
30 5 0.18
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (29 bp):
AAAAGTATATATAAACATAAATTATTAAA
Found at i:37797232 original size:24 final size:24
Alignment explanation
Indices: 37797204--37797251 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
37797194 TAAATAACTA
37797204 TTATAAGATCTTTAGAATAATATT
1 TTATAAGATCTTTAGAATAATATT
37797228 TTATAAGATCTTTAGAATAATATT
1 TTATAAGATCTTTAGAATAATATT
37797252 ATTTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (24 bp):
TTATAAGATCTTTAGAATAATATT
Found at i:37797450 original size:25 final size:26
Alignment explanation
Indices: 37797398--37797460 Score: 101
Period size: 25 Copynumber: 2.4 Consensus size: 26
37797388 ATAAAAAATA
37797398 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAA--TTTTTTTATTT
37797426 ACCAAAATATTATAA-TTTTTTATTT
1 ACCAAAATATTATAATTTTTTTATTT
37797451 ACCAAAATAT
1 ACCAAAATAT
37797461 ACCAAAAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 20 0.57
28 15 0.43
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (26 bp):
ACCAAAATATTATAATTTTTTTATTT
Found at i:37797549 original size:27 final size:27
Alignment explanation
Indices: 37797519--37797570 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
37797509 CACCCTGGTC
* * *
37797519 GTGCCAAGGTGATTGGCTGCACCAAAG
1 GTGCCAAAGTCATTGGCGGCACCAAAG
37797546 GTGCCAAAGTCATTGGCGGCACCAA
1 GTGCCAAAGTCATTGGCGGCACCAA
37797571 TGTTATAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.31, T:0.17
Consensus pattern (27 bp):
GTGCCAAAGTCATTGGCGGCACCAAAG
Found at i:37797649 original size:30 final size:30
Alignment explanation
Indices: 37797613--37797891 Score: 138
Period size: 30 Copynumber: 9.2 Consensus size: 30
37797603 GAGAGGGAAA
37797613 GAAAGAAAGAAAGAAAGAAAGAAAAAGAAG
1 GAAAGAAAGAAAGAAAGAAAGAAAAAGAAG
*
37797643 GAAAGAAAAGGAAAG-GAGAAGAGAAAAA-AA-
1 GAAAG-AAA-GAAAGAAAGAA-AGAAAAAGAAG
* * *
37797673 AAAAGAAAG-AAGAAGAGGAAAGGAGAAGAA-
1 GAAAGAAAGAAAGAA-A-GAAAGAAAAAGAAG
* * *
37797703 AAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGG
1 GAAAGAAAG--AAAGAAAGAAAGAAAAAG-AA-G
* * *
37797737 AGAAGAGAAAAAAAAAAAGAAAGAAGAAG-AG
1 -GAA-AGAAAGAAAGAAAGAAAGAAAAAGAAG
37797768 GAAAGGAGAAGAAA-AAAGAAAGAAAAAGAAG
1 GAAA-GA-AAGAAAGAAAGAAAGAAAAAGAAG
*
37797799 GAAAGAAAAGGAAAG-GAGAAGAGAAAAA-AA-
1 GAAAG-AAA-GAAAGAAAGAA-AGAAAAAGAAG
* * *
37797829 AAAAGAAAG-AAGAAGAGGAAAGGAGAAGAA-
1 GAAAGAAAGAAAGAA-A-GAAAGAAAAAGAAG
* *
37797859 AAAAGAAAG-AA-AAAGAAGGAAAGAA-AAG
1 GAAAGAAAGAAAGAAAGAAAGAAA-AAGAAG
37797887 GAAAG
1 GAAAG
37797892 GAGAAGAGAA
Statistics
Matches: 195, Mismatches: 26, Indels: 58
0.70 0.09 0.21
Matches are distributed among these distances:
27 13 0.07
28 9 0.05
29 21 0.11
30 64 0.33
31 40 0.21
32 22 0.11
33 5 0.03
34 14 0.07
35 2 0.01
36 5 0.03
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (30 bp):
GAAAGAAAGAAAGAAAGAAAGAAAAAGAAG
Found at i:37797731 original size:78 final size:78
Alignment explanation
Indices: 37797619--37797908 Score: 571
Period size: 78 Copynumber: 3.7 Consensus size: 78
37797609 GAAAGAAAGA
37797619 AAGAAAGAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAAGAAAGAA
1 AAGAAA-AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAAGAAAGAA
37797684 GAAGAGGAAAGGAG
65 GAAGAGGAAAGGAG
37797698 AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAAGAAAGAAG
1 AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAAGAAAGAAG
37797763 AAGAGGAAAGGAG
66 AAGAGGAAAGGAG
37797776 AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAAGAAAGAAG
1 AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAAGAAAGAAG
37797841 AAGAGGAAAGGAG
66 AAGAGGAAAGGAG
37797854 AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAA
1 AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAA
37797909 NNNNNNNNNN
Statistics
Matches: 211, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
78 205 0.97
79 6 0.03
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (78 bp):
AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAAGAAAGAAG
AAGAGGAAAGGAG
Found at i:37797755 original size:48 final size:49
Alignment explanation
Indices: 37797698--37797908 Score: 189
Period size: 48 Copynumber: 4.1 Consensus size: 49
37797688 AGGAAAGGAG
*
37797698 AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAA
1 AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGAAGAAGAGAAA
* * *
37797747 AA-AAAAAAGAAAGAAGAAG-AGGAAAGGAGAA-GAAAAAAGAA-AGAAA
1 AAGAAAAAAGAAAGAAAAAGAAGGAAA-GAAAAGGAAAGAAGAAGAGAAA
* * * *
37797793 AAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAAAGAAAGAAGAAGAGGAAAGGA
1 AAGAA-AAAAG-AAA-GAAA-AAGAAG-G--AAAGAAAAGGAAAGAAGAAGA-G-AA--A
*
37797853 GAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAA
1 -AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGAAGAAGAGAAA
37797903 AA-AAAA
1 AAGAAAA
37797909 NNNNNNNNNN
Statistics
Matches: 130, Mismatches: 15, Indels: 35
0.72 0.08 0.19
Matches are distributed among these distances:
46 7 0.05
47 16 0.12
48 28 0.22
49 7 0.05
50 4 0.03
51 2 0.02
52 4 0.03
53 2 0.02
54 21 0.16
55 12 0.09
56 2 0.02
57 6 0.05
58 6 0.05
59 3 0.02
60 5 0.04
61 5 0.04
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (49 bp):
AAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGAAGAAGAGAAA
Found at i:37804070 original size:3 final size:3
Alignment explanation
Indices: 37804062--37804106 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
37804052 AATAACATCT
*
37804062 TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA
37804107 TACTAACTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:37804364 original size:27 final size:26
Alignment explanation
Indices: 37804326--37804428 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 26
37804316 AACACGAGTA
* *
37804326 GTGCCACCAATCAGTATGGCACCATTG
1 GTGCCGCCAATCACT-TGGCACCATTG
* * * *
37804353 GTGCCGCCAATCTCCTTGACATCATCG
1 GTGCCGCCAATC-ACTTGGCACCATTG
* *
37804380 GTGCCGCCAATAACTTTGGCACCTTTG
1 GTGCCGCCAATCAC-TTGGCACCATTG
37804407 GTGCCGCCAATCATCTTGGCAC
1 GTGCCGCCAATCA-CTTGGCAC
37804429 GACCAGGGTG
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
26 1 0.02
27 57 0.95
28 2 0.03
ACGTcount: A:0.20, C:0.33, G:0.21, T:0.25
Consensus pattern (26 bp):
GTGCCGCCAATCACTTGGCACCATTG
Found at i:37804481 original size:17 final size:17
Alignment explanation
Indices: 37804459--37804492 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37804449 GGTGAAGGTT
*
37804459 TTTTTTTCTATTTTTTG
1 TTTTTTTCTATATTTTG
*
37804476 TTTTTTTGTATATTTTG
1 TTTTTTTCTATATTTTG
37804493 GTAAATAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.03, G:0.09, T:0.79
Consensus pattern (17 bp):
TTTTTTTCTATATTTTG
Found at i:37804515 original size:27 final size:26
Alignment explanation
Indices: 37804485--37804547 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
37804475 GTTTTTTTGT
*
37804485 ATATTTTGGTAAATAAAAAAATTTATA
1 ATATTTTGGTAAAT-AAAAAAGTTATA
*
37804512 ATATTTGGGTAAATAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAGTTATA
37804538 ATATTTTGGT
1 ATATTTTGGT
37804548 TATTTTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (26 bp):
ATATTTTGGTAAATAAAAAAGTTATA
Found at i:37809829 original size:24 final size:24
Alignment explanation
Indices: 37809802--37809848 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
37809792 AACTCTTCTA
*
37809802 AAAAAAACTCAAGGGAAATTATTG
1 AAAAAAACTCAAGAGAAATTATTG
*
37809826 AAAAAAACTCAAGAGAATTTATT
1 AAAAAAACTCAAGAGAAATTATT
37809849 AACTCAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.55, C:0.09, G:0.13, T:0.23
Consensus pattern (24 bp):
AAAAAAACTCAAGAGAAATTATTG
Found at i:37811966 original size:29 final size:29
Alignment explanation
Indices: 37811933--37811989 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
37811923 TGGGTATTAC
*
37811933 AGAAATATGTGTTAGTATTGAATTGAATG
1 AGAAATATGTGTTAATATTGAATTGAATG
37811962 AGAAATATGTGTTAATATTGAATTGAAT
1 AGAAATATGTGTTAATATTGAATTGAAT
37811990 ATTGATTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.39
Consensus pattern (29 bp):
AGAAATATGTGTTAATATTGAATTGAATG
Found at i:37812182 original size:21 final size:21
Alignment explanation
Indices: 37812156--37812217 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
37812146 TTTGCCGATC
*
37812156 AGGCACTATATGCGTCGTATT
1 AGGCACTATATGTGTCGTATT
* ** *
37812177 AGGCACCACGTGTGTCGTTTT
1 AGGCACTATATGTGTCGTATT
*
37812198 AGGCACTTTATGTGTCGTAT
1 AGGCACTATATGTGTCGTAT
37812218 ACTGCTTCTA
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.35
Consensus pattern (21 bp):
AGGCACTATATGTGTCGTATT
Found at i:37812215 original size:42 final size:41
Alignment explanation
Indices: 37812156--37812300 Score: 109
Period size: 42 Copynumber: 3.5 Consensus size: 41
37812146 TTTGCCGATC
*
37812156 AGGCACTATATGCGTCGTATTAGGCACCACGTGTGTCGTTTT
1 AGGCACTATATGTGTCGTATTA-GCACCACGTGTGTCGTTTT
* * ** * * * *
37812198 AGGCACTTTATGTGTCGTA-TA-CTGCTTC-TAAT-ACATTTACC
1 AGGCACTATATGTGTCGTATTAGC-ACCACGT-GTGTCGTTT--T
37812239 AGGCACTATATGTGTCGTATTAGACACCACGTGTGTCGTTTT
1 AGGCACTATATGTGTCGTATTAG-CACCACGTGTGTCGTTTT
* *
37812281 AGGCACTTTATGTGCCGTAT
1 AGGCACTATATGTGTCGTAT
37812301 ACTGCTTCTG
Statistics
Matches: 75, Mismatches: 19, Indels: 18
0.67 0.17 0.16
Matches are distributed among these distances:
39 6 0.08
40 3 0.04
41 20 0.27
42 37 0.49
43 3 0.04
44 6 0.08
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (41 bp):
AGGCACTATATGTGTCGTATTAGCACCACGTGTGTCGTTTT
Found at i:37812294 original size:83 final size:83
Alignment explanation
Indices: 37812155--37812309 Score: 283
Period size: 83 Copynumber: 1.9 Consensus size: 83
37812145 CTTTGCCGAT
* *
37812155 CAGGCACTATATGCGTCGTATTAGGCACCACGTGTGTCGTTTTAGGCACTTTATGTGTCGTATAC
1 CAGGCACTATATGCGTCGTATTAGACACCACGTGTGTCGTTTTAGGCACTTTATGTGCCGTATAC
37812220 TGCTTCTAATACATTTAC
66 TGCTTCTAATACATTTAC
*
37812238 CAGGCACTATATGTGTCGTATTAGACACCACGTGTGTCGTTTTAGGCACTTTATGTGCCGTATAC
1 CAGGCACTATATGCGTCGTATTAGACACCACGTGTGTCGTTTTAGGCACTTTATGTGCCGTATAC
37812303 TGCTTCT
66 TGCTTCT
37812310 GATATATTGA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 69 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (83 bp):
CAGGCACTATATGCGTCGTATTAGACACCACGTGTGTCGTTTTAGGCACTTTATGTGCCGTATAC
TGCTTCTAATACATTTAC
Found at i:37815316 original size:45 final size:45
Alignment explanation
Indices: 37815220--37815371 Score: 166
Period size: 45 Copynumber: 3.4 Consensus size: 45
37815210 ACACTTTGAA
* * * *
37815220 ATAAT-AATAGATACACGGTGG-ATCTGCACACAGC-ACCACCCTT
1 ATAATCAAT-GATACCCGGTGGAATCAGCACATAGCAACCACCTTT
* * *
37815263 ATAGTCAATGATACTCGGTGGAATCAACACATAGCAACCACCTTT
1 ATAATCAATGATACCCGGTGGAATCAGCACATAGCAACCACCTTT
* * *
37815308 ATAATCAATGGTACCCAGTGGAATCAGCACATAGCAACCACATTT
1 ATAATCAATGATACCCGGTGGAATCAGCACATAGCAACCACCTTT
* *
37815353 ATAATTAATGGTACCCGGT
1 ATAATCAATGATACCCGGT
37815372 ATACGTAGTA
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
43 15 0.16
44 13 0.14
45 64 0.70
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (45 bp):
ATAATCAATGATACCCGGTGGAATCAGCACATAGCAACCACCTTT
Found at i:37817045 original size:18 final size:19
Alignment explanation
Indices: 37817004--37817046 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
37816994 TTCTTGTTAA
*
37817004 TATAAAATTCTTAAGTAAC
1 TATAAAATACTTAAGTAAC
*
37817023 T-TAAAATACTTAA-TAAT
1 TATAAAATACTTAAGTAAC
37817040 TATAAAA
1 TATAAAA
37817047 AATTCAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 4 0.19
18 16 0.76
19 1 0.05
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.37
Consensus pattern (19 bp):
TATAAAATACTTAAGTAAC
Found at i:37824283 original size:9 final size:9
Alignment explanation
Indices: 37824269--37824314 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
37824259 NNNNNNNTCA
37824269 TATTCGAAT
1 TATTCGAAT
37824278 TATTCGAAT
1 TATTCGAAT
37824287 TATTCGAAT
1 TATTCGAAT
*
37824296 TATTCGAGT
1 TATTCGAAT
37824305 TATTCGAAT
1 TATTCGAAT
37824314 T
1 T
37824315 CGAAAACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37824385 original size:9 final size:9
Alignment explanation
Indices: 37824368--37824398 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
37824358 TCGAGTTGAT
37824368 TCGAATAAC
1 TCGAATAAC
*
37824377 TCGATTAAC
1 TCGAATAAC
37824386 TCGAATAAC
1 TCGAATAAC
37824395 TCGA
1 TCGA
37824399 TCCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:37825881 original size:82 final size:82
Alignment explanation
Indices: 37825744--37825896 Score: 306
Period size: 82 Copynumber: 1.9 Consensus size: 82
37825734 GAGGCATATC
37825744 AATGGTGGACAATTATAACTCTAGCAGTTCCATTTGAATGTGTATTATGGGAGCTTTTTTTTTTT
1 AATGGTGGACAATTATAACTCTAGCAGTTCCATTTGAATGTGTATTATGGGAGCTTTTTTTTTTT
37825809 TTTTTTAAAATTTAATA
66 TTTTTTAAAATTTAATA
37825826 AATGGTGGACAATTATAACTCTAGCAGTTCCATTTGAATGTGTATTATGGGAGCTTTTTTTTTTT
1 AATGGTGGACAATTATAACTCTAGCAGTTCCATTTGAATGTGTATTATGGGAGCTTTTTTTTTTT
37825891 TTTTTT
66 TTTTTT
37825897 TAGAATTTCA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 71 1.00
ACGTcount: A:0.25, C:0.09, G:0.17, T:0.48
Consensus pattern (82 bp):
AATGGTGGACAATTATAACTCTAGCAGTTCCATTTGAATGTGTATTATGGGAGCTTTTTTTTTTT
TTTTTTAAAATTTAATA
Found at i:37827107 original size:10 final size:10
Alignment explanation
Indices: 37827094--37827118 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37827084 GTACTTTATA
37827094 TACTTTTACC
1 TACTTTTACC
37827104 TACTTTTACC
1 TACTTTTACC
37827114 TACTT
1 TACTT
37827119 ATGATCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.28, G:0.00, T:0.52
Consensus pattern (10 bp):
TACTTTTACC
Found at i:37829491 original size:127 final size:127
Alignment explanation
Indices: 37829255--37829492 Score: 320
Period size: 127 Copynumber: 1.9 Consensus size: 127
37829245 AACATAAGTT
* * * * * *
37829255 AATATTTTTGCGTTTCGGTGATTCGAGATATCGTACCCTAACTTACGGGGTTTCGATTTTCTCGT
1 AATATTTATGCGTTTCGGTGATTCAAGAAATAGTACCCTAAATTACGGGGTCTCGATTTTCTCGT
* *
37829320 TAAAACCAAATAGCAAAATATCCTTTTAAAATTTCAAAAGATAAATGAAGTCTTGATAAAGC
66 TAAAACCAAATAGAAAAATATCCTTTTAAAACTTCAAAAGATAAATGAAGTCTTGATAAAGC
*
37829382 AATATTTATGCGCTTT-GGTGATTCAAGAAATAGTACTCTAAATTACGGGGTCTCGATTTTCTCG
1 AATATTTATGCG-TTTCGGTGATTCAAGAAATAGTACCCTAAATTACGGGGTCTCGATTTTCTCG
* * *
37829446 TT-AAACTCAAATGGAAAAATATCCTCTTT-AAACTTCAGAATATAAAT
65 TTAAAAC-CAAATAGAAAAATATCCT-TTTAAAACTTCAAAAGATAAAT
37829493 TTCAATAAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
126 4 0.04
127 86 0.90
128 6 0.06
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (127 bp):
AATATTTATGCGTTTCGGTGATTCAAGAAATAGTACCCTAAATTACGGGGTCTCGATTTTCTCGT
TAAAACCAAATAGAAAAATATCCTTTTAAAACTTCAAAAGATAAATGAAGTCTTGATAAAGC
Found at i:37829858 original size:22 final size:23
Alignment explanation
Indices: 37829809--37829855 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
37829799 GTTTTAATAT
*
37829809 AATCAAATCGTTTCTTAAAAACA
1 AATCAAATCGTTTATTAAAAACA
*
37829832 AATCAAATTGTTTATTAAAAACA
1 AATCAAATCGTTTATTAAAAACA
37829855 A
1 A
37829856 TCACTTTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
AATCAAATCGTTTATTAAAAACA
Found at i:37832524 original size:5 final size:5
Alignment explanation
Indices: 37832514--37832579 Score: 59
Period size: 5 Copynumber: 13.4 Consensus size: 5
37832504 AATGTTTCAT
*
37832514 GAAAA GAAAA GAAAAA GAAAA -AAATA -AAAA -AAAA GAAAA GAAGA -AAAA
1 GAAAA GAAAA G-AAAA GAAAA GAAA-A GAAAA GAAAA GAAAA GAAAA GAAAA
*
37832562 GAAAAA GAAAA AAAAA GA
1 G-AAAA GAAAA GAAAA GA
37832580 CCAAGGCGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
4 11 0.21
5 31 0.60
6 10 0.19
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (5 bp):
GAAAA
Found at i:37832531 original size:6 final size:6
Alignment explanation
Indices: 37832515--37832577 Score: 69
Period size: 6 Copynumber: 10.5 Consensus size: 6
37832505 ATGTTTCATG
*
37832515 AAAAG- AAAAGA AAAAGA AAAA-A ATAAAAA AAAAGAA AAGAAGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA A-AAAGA AAAAG-A AA-AAGA AAAAGA
37832564 AAAAGA AAAA-A AAA
1 AAAAGA AAAAGA AAA
37832578 GACCAAGGCG
Statistics
Matches: 52, Mismatches: 1, Indels: 10
0.83 0.02 0.16
Matches are distributed among these distances:
5 11 0.21
6 30 0.58
7 8 0.15
8 3 0.06
ACGTcount: A:0.86, C:0.00, G:0.13, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:37832553 original size:29 final size:30
Alignment explanation
Indices: 37832515--37832579 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
37832505 ATGTTTCATG
*
37832515 AAAAGAAAAGAA-AAAGAA-AAAAATAAAAA
1 AAAAGAAAAGAAGAAA-AAGAAAAAGAAAAA
37832544 AAAAGAAAAGAAGAAAAAGAAAAAGAAAAA
1 AAAAGAAAAGAAGAAAAAGAAAAAGAAAAA
37832574 AAAAGA
1 AAAAGA
37832580 CCAAGGCGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 14 0.42
30 19 0.58
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (30 bp):
AAAAGAAAAGAAGAAAAAGAAAAAGAAAAA
Found at i:37833646 original size:89 final size:89
Alignment explanation
Indices: 37833526--37833753 Score: 339
Period size: 89 Copynumber: 2.6 Consensus size: 89
37833516 TCATTATGGT
* *
37833526 AGATCTTGTATTCCTGTATTGGCAGCAAAGTAGATCAAAGACACCAGCCTCGCCTCCCTGAGTTT
1 AGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTT
* *
37833591 GCGGCGGAGCAAGTTGAAGATAAC
66 ACAGCGGAGCAAGTTGAAGATAAC
* **
37833615 AGATCTTGTCTTCCTGCATTGGCAGTGAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTT
1 AGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTT
*
37833680 ACAGCGGAGCAGGTTGAAGATAAC
66 ACAGCGGAGCAAGTTGAAGATAAC
* * * * *
37833704 AAATTTTTTCTTCCTGTATTGGCAGCAAAATAGATCGAAGACACCTGCCT
1 AGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCT
37833754 TATCTCCCTG
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 123 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (89 bp):
AGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTT
ACAGCGGAGCAAGTTGAAGATAAC
Found at i:37833761 original size:89 final size:89
Alignment explanation
Indices: 37833528--37833841 Score: 335
Period size: 89 Copynumber: 3.5 Consensus size: 89
37833518 ATTATGGTAG
* * *
37833528 ATCTTGTATTCCTGTATTGGCAGCAAAGTAGATCAAAGACACCAGCCTCGCCTCCCTGAGTTTGC
1 ATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTTAC
* *
37833593 GGCGGAGCAAGTTGAAGATAACAG
66 AGCGGAGCAAGTTGAAGATAACAA
* **
37833617 ATCTTGTCTTCCTGCATTGGCAGTGAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTTAC
1 ATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTTAC
*
37833682 AGCGGAGCAGGTTGAAGATAACAA
66 AGCGGAGCAAGTTGAAGATAACAA
* * * * *** *
37833706 ATTTTTTCTTCCTGTATTGGCAGCAAAATAGATCGAAGACACCTGCCTTATCTCCCTGAG--CAG
1 ATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTTA-
* * *** * * *
37833769 TAGTGGAGTGGGTTAAAGTTTACAA
65 CAGCGGAGCAAGTTGAAGATAACAA
* ** * *
37833794 ATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCT
1 ATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCT
37833842 TATCTTCCTG
Statistics
Matches: 188, Mismatches: 36, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
87 1 0.01
88 57 0.30
89 130 0.69
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (89 bp):
ATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGACACCAGCCTCGCCTCCCTGAGTTTAC
AGCGGAGCAAGTTGAAGATAACAA
Found at i:37833827 original size:88 final size:88
Alignment explanation
Indices: 37833603--37834204 Score: 553
Period size: 88 Copynumber: 6.8 Consensus size: 88
37833593 GGCGGAGCAA
* * * * * * ***
37833603 GTTGAAGATAACAGATCTTGTCTTCCTGCATTGGCAGTGAAGTAGATCGAAGACACCAGCCTCGC
1 GTTGAAGATTACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTAT
* * *
37833668 CTCCCTGAGTTTA-CAGCGGAGCAG
66 CTCCCTGAG--CAGCAGTGGAGTAG
* * * * ** ** * *
37833692 GTTGAAGATAACAAATTTTTTCTTCCTGTATTGGCAGCAAAATAGATCGAAGACACCTGCCTTAT
1 GTTGAAGATTACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTAT
* *
37833757 CTCCCTGAGCAGTAGTGGAGTGG
66 CTCCCTGAGCAGCAGTGGAGTAG
* *
37833780 GTTAAAGTTTACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTAT
1 GTTGAAGATTACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTAT
*
37833845 CTTCCTGAGCAGCAGTGGAGTAG
66 CTCCCTGAGCAGCAGTGGAGTAG
* * * *
37833868 GTTGAAGATTGA-AGATTTTGTCTTCCTATACTGGCAGTGAAGCAGATCGAAAACACCAACCTTA
1 GTTGAAGATT-ACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTA
* * *
37833932 TCTTCCAGAGAAGCAGTGGAGTAG
65 TCTCCCTGAGCAGCAGTGGAGTAG
* * * *
37833956 GTTGAAGATTGCAAATCTTGTCTTCCTGTATTGGCAGTGAAACAGATCGAAATA-ACAAGCCTTA
1 GTTGAAGATTACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAA-ACACCAGCCTTA
* * * * *
37834020 TCTCCTTAAGTAGCAGTGAAATAG
65 TCTCCCTGAGCAGCAGTGGAGTAG
* * ** * ** * * * *
37834044 GTTAAAGATTGCAGGTCTTATCTTCCTACACTGGTAGTGAAACAGATCAAAAACACAAGCCTTAT
1 GTTGAAGATTACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTAT
** * *
37834109 CTTTCTGAGCAGAAGTGGAGTAA
66 CTCCCTGAGCAGCAGTGGAGTAG
* * * * ** * *
37834132 GTTGAAGATTGCAGATCTTGTCTTCCTGTACTGACAGTGAAGCAAATTAAAAACACAAACCTTAT
1 GTTGAAGATTACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTAT
37834197 CTCCCTGA
66 CTCCCTGA
37834205 AGTTGCAGAA
Statistics
Matches: 423, Mismatches: 85, Indels: 11
0.82 0.16 0.02
Matches are distributed among these distances:
87 2 0.00
88 356 0.84
89 65 0.15
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (88 bp):
GTTGAAGATTACAAATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTAT
CTCCCTGAGCAGCAGTGGAGTAG
Found at i:37833850 original size:44 final size:44
Alignment explanation
Indices: 37833800--37833937 Score: 109
Period size: 44 Copynumber: 3.1 Consensus size: 44
37833790 ACAAATCTTG
37833800 TCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTA
1 TCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTA
* * * * * * **** ** *
37833844 TCTTCCTG-AGC-AGCAGTGGAGTAGGTTGAAGATTGAAGATTTTG
1 TCTTCCTGTA-CTGGCAGTGAAGCAGATCGAAAACACCAG-CCTTA
* *
37833888 TCTTCCTATACTGGCAGTGAAGCAGATCGAAAACACCAACCTTA
1 TCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTA
37833932 TCTTCC
1 TCTTCC
37833938 AGAGAAGCAG
Statistics
Matches: 62, Mismatches: 28, Indels: 8
0.63 0.29 0.08
Matches are distributed among these distances:
43 18 0.29
44 27 0.44
45 17 0.27
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (44 bp):
TCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTA
Found at i:37834020 original size:264 final size:264
Alignment explanation
Indices: 37833685--37834198 Score: 652
Period size: 264 Copynumber: 1.9 Consensus size: 264
37833675 AGTTTACAGC
* * * * **
37833685 GGAGCAGGTTGAAGATAACAAATTTTTTCTTCCTGTATTGGCAGCAAAATAGATCGAAGACACCT
1 GGAGCAGGTTGAAGATAACAAATCTTGTCTTCCTGTATTGGCAGCAAAACAGATCGAAGAAACAA
* * * * * * * **
37833750 GCCTTATCTCCCTGAGCAGTAGTGGAGTGGGTTAAAGTTTACAAATCTTGTCTTCCTGTACTGGC
66 GCCTTATCTCCCTAAGCAGCAGTGAAATAGGTTAAAGATTACAAATCTTATCTTCCTACACTGGC
* * * * *
37833815 AGTGAAGCAGATCGAAAACACCAGCCTTATCTTCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGA
131 AGTGAAACAGATCAAAAACACAAGCCTTATCTTCCTGAGCAGAAGTGGAGTAAGTTGAAGATTGA
* * * * *
37833880 AGATTTTGTCTTCCTATACTGGCAGTGAAGCAGATCGAAAACACCAACCTTATCTTCCAGAGAAG
196 AGATCTTGTCTTCCTATACTGACAGTGAAGCAAATCAAAAACACAAACCTTATCTTCCAGAGAAG
37833945 CAGT
261 CAGT
* ** **
37833949 GGAGTAGGTTGAAGATTGCAAATCTTGTCTTCCTGTATTGGCAGTGAAACAGATCGAA-ATAACA
1 GGAGCAGGTTGAAGATAACAAATCTTGTCTTCCTGTATTGGCAGCAAAACAGATCGAAGA-AACA
* * * **
37834013 AGCCTTATCTCCTTAAGTAGCAGTGAAATAGGTTAAAGATTGCAGGTCTTATCTTCCTACACTGG
65 AGCCTTATCTCCCTAAGCAGCAGTGAAATAGGTTAAAGATTACAAATCTTATCTTCCTACACTGG
* *
37834078 TAGTGAAACAGATCAAAAACACAAGCCTTATCTTTCTGAGCAGAAGTGGAGTAAGTTGAAGATTG
130 CAGTGAAACAGATCAAAAACACAAGCCTTATCTTCCTGAGCAGAAGTGGAGTAAGTTGAAGATTG
* * *
37834143 CAGATCTTGTCTTCCTGTACTGACAGTGAAGCAAATTAAAAACACAAACCTTATCT
195 AAGATCTTGTCTTCCTATACTGACAGTGAAGCAAATCAAAAACACAAACCTTATCT
37834199 CCCTGAAGTT
Statistics
Matches: 209, Mismatches: 40, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
263 1 0.00
264 208 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (264 bp):
GGAGCAGGTTGAAGATAACAAATCTTGTCTTCCTGTATTGGCAGCAAAACAGATCGAAGAAACAA
GCCTTATCTCCCTAAGCAGCAGTGAAATAGGTTAAAGATTACAAATCTTATCTTCCTACACTGGC
AGTGAAACAGATCAAAAACACAAGCCTTATCTTCCTGAGCAGAAGTGGAGTAAGTTGAAGATTGA
AGATCTTGTCTTCCTATACTGACAGTGAAGCAAATCAAAAACACAAACCTTATCTTCCAGAGAAG
CAGT
Found at i:37834434 original size:42 final size:43
Alignment explanation
Indices: 37834388--37834482 Score: 104
Period size: 44 Copynumber: 2.2 Consensus size: 43
37834378 TTTCCCTGGC
* *
37834388 GTTGCAGTGAAACAGA-G-AGGATACCAATCTTATCTCCCTAAA
1 GTTGCAGTGAAACAGATGAAGCA-ACCAATCCTATCTCCCTAAA
* * **
37834430 GTTGCAGTGGAGCAGATTGAAGCAATTAATCCTATCTCCCTAAA
1 GTTGCAGTGAAACAGA-TGAAGCAACCAATCCTATCTCCCTAAA
37834474 GTTGCAGTG
1 GTTGCAGTG
37834483 GAGAGGATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
42 14 0.32
44 27 0.61
45 3 0.07
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (43 bp):
GTTGCAGTGAAACAGATGAAGCAACCAATCCTATCTCCCTAAA
Found at i:37834470 original size:44 final size:44
Alignment explanation
Indices: 37834413--37834765 Score: 220
Period size: 44 Copynumber: 7.9 Consensus size: 44
37834403 AGAGGATACC
* * *
37834413 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAATT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAATA
* * * *
37834457 AATCCTATCTCCCTAAAGTTGCAGTGGAG-AGGATTAAAACGATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTAAAGCAATA
* * * *
37834501 AATCCTATAC-CTCTGAAGTTGCAGTAGG-TC-GAATTAAACCTACCATAA
1 AATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAG-ATTAAAGC-A--AT-A
* * *
37834549 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAACA
1 -AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAATA
* * * * * * *
37834596 AAACTTATCTCCTTGAAGTTGCAGTGGAGTAGGTTGAAGTAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAATA
* *
37834640 AA-CATTATCTCCCTGAAGTTGCAGTGGAGC-GTATTGAAGCTACT-
1 AATC-TTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAGC-AATA
* * * * * *
37834684 AATCTTATCTCCCTAAAGTTACAGTGGAGCAAATTAAAACGATG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAATA
* *
37834728 AATCTTATAC-CTCTGAAGTTGCAGTAGG-TCAGATTAAA
1 AATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTAAA
37834766 TCTACCATAA
Statistics
Matches: 245, Mismatches: 41, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
43 5 0.02
44 162 0.66
45 39 0.16
46 2 0.01
47 3 0.01
48 2 0.01
49 5 0.02
50 26 0.11
51 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAATA
Found at i:37836548 original size:26 final size:26
Alignment explanation
Indices: 37836499--37836548 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37836489 AAAATGTTTG
* *
37836499 ATATTAGCTACTTTAAGTTGTTTCAT
1 ATATTACCTACTTTAAATTGTTTCAT
37836525 ATATTACCTA-TTTAAATTGCTTTC
1 ATATTACCTACTTTAAATTG-TTTC
37836549 TATGTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.28, C:0.14, G:0.08, T:0.50
Consensus pattern (26 bp):
ATATTACCTACTTTAAATTGTTTCAT
Found at i:37837214 original size:127 final size:127
Alignment explanation
Indices: 37836973--37837214 Score: 292
Period size: 127 Copynumber: 1.9 Consensus size: 127
37836963 ATTTTAACAA
* * * * * * * *
37836973 AAGGTAATATTTTTGCGTTTCGGTGATCCGAGATATTGTACCCTACCTTACGAGGTTTTGGTTTT
1 AAGGCAATATTTATGCGTTTCGGTGATCCGAGAAATCGTACCCTAACTTACGAGGTCTCGATTTT
*
37837038 CTCGCTAAAACCAAATAGCAAAATATCCTTTTAAATTTTTAAAAGATAAATGAAGTCCTGAT
66 CTCGCTAAAACCAAATAGCAAAATATCCTTTTAAATCTTTAAAAGATAAATGAAGTCCTGAT
* * * *
37837100 AAGGCAATATTTATGCGTTTTGGTGATTCGAGAAATCGTACCTTAACTTACGGGGTCTCGATTTT
1 AAGGCAATATTTATGCGTTTCGGTGATCCGAGAAATCGTACCCTAACTTACGAGGTCTCGATTTT
* * *
37837165 CTCG-TTAAACTCAAAT-GACAAAATATCCTCTTTAAA-CTTTAGAATATAAA
66 CTCGCTAAAAC-CAAATAG-CAAAATATCCT-TTTAAATCTTTAAAAGATAAA
37837215 ATTTCAATAA
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
126 6 0.06
127 84 0.88
128 6 0.06
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (127 bp):
AAGGCAATATTTATGCGTTTCGGTGATCCGAGAAATCGTACCCTAACTTACGAGGTCTCGATTTT
CTCGCTAAAACCAAATAGCAAAATATCCTTTTAAATCTTTAAAAGATAAATGAAGTCCTGAT
Found at i:37842002 original size:54 final size:54
Alignment explanation
Indices: 37841926--37842035 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 54
37841916 GAACCACAAG
* *
37841926 AACACACCTAGGCCAAAAATCAAAGCACAAGCTCCAACAATTAACCCCACCACT
1 AACAAACCTAGGCCAAAAATCAAACCACAAGCTCCAACAATTAACCCCACCACT
* *
37841980 AACAAACCTAGGCCAAGAATCAAACCAGAAGCTCCAACAATTAACCCCACCACT
1 AACAAACCTAGGCCAAAAATCAAACCACAAGCTCCAACAATTAACCCCACCACT
37842034 AA
1 AA
37842036 TCCTCTAATG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.45, C:0.35, G:0.08, T:0.11
Consensus pattern (54 bp):
AACAAACCTAGGCCAAAAATCAAACCACAAGCTCCAACAATTAACCCCACCACT
Found at i:37843225 original size:20 final size:20
Alignment explanation
Indices: 37843202--37843245 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
37843192 GTAAAATCGC
37843202 TAATTACAGCATGATATAAT
1 TAATTACAGCATGATATAAT
** * *
37843222 TAATTTTATCATTATATAAT
1 TAATTACAGCATGATATAAT
37843242 TAAT
1 TAAT
37843246 GTTTCTAGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (20 bp):
TAATTACAGCATGATATAAT
Found at i:37843334 original size:120 final size:122
Alignment explanation
Indices: 37843119--37843363 Score: 467
Period size: 120 Copynumber: 2.0 Consensus size: 122
37843109 AAATGTGAAG
37843119 TTAATGTTTCTAGTTTGTGTTTTTTTTTTTTTTTGAACAAAAGACGACCACAGGGGTCGACACAT
1 TTAATGTTTCTAGTTTGTGTTTTTTTTTTTTTTTGAACAAAAGACGACCACAGGGGTCGACACAT
37843184 ATTATTAAGTAAAATCGCTAATTACAGCATGATATAATTAATTTTATCATTATATAA
66 ATTATTAAGTAAAATCGCTAATTACAGCATGATATAATTAATTTTATCATTATATAA
*
37843241 TTAATGTTTCTAG-TT-TGTTTTTTTTTTTTTTTGAACAGAAGACGACCACAGGGGTCGACACAT
1 TTAATGTTTCTAGTTTGTGTTTTTTTTTTTTTTTGAACAAAAGACGACCACAGGGGTCGACACAT
37843304 ATTATTAAGTAAAATCGCTAATTACAGCATGATATAATTAATTTTATCATTATATAA
66 ATTATTAAGTAAAATCGCTAATTACAGCATGATATAATTAATTTTATCATTATATAA
37843361 TTA
1 TTA
37843364 GTTCAATAAT
Statistics
Matches: 122, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
120 107 0.88
121 2 0.02
122 13 0.11
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.42
Consensus pattern (122 bp):
TTAATGTTTCTAGTTTGTGTTTTTTTTTTTTTTTGAACAAAAGACGACCACAGGGGTCGACACAT
ATTATTAAGTAAAATCGCTAATTACAGCATGATATAATTAATTTTATCATTATATAA
Found at i:37843864 original size:5 final size:5
Alignment explanation
Indices: 37843848--37843882 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
37843838 TTATGTCCCT
37843848 TTTTA GTTTTA TTTTA TTTTA TTTTA TTTT- TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
37843883 AATGACACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:37847901 original size:17 final size:17
Alignment explanation
Indices: 37847879--37847914 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
37847869 AATAATTATC
37847879 TTTTTTAAAAGATAATT
1 TTTTTTAAAAGATAATT
37847896 TTTTTTAAAAGATAATT
1 TTTTTTAAAAGATAATT
37847913 TT
1 TT
37847915 ATAGGTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTTTTAAAAGATAATT
Found at i:37849988 original size:22 final size:22
Alignment explanation
Indices: 37849949--37849991 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
37849939 AATTTTTATA
37849949 TTTTTATTTTTAGGAATTTAATC
1 TTTTTATTTTTA-GAATTTAATC
37849972 TTTTTATTTTTTA-AATTTAA
1 TTTTTA-TTTTTAGAATTTAA
37849992 AAATTTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 6 0.32
24 6 0.32
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (22 bp):
TTTTTATTTTTAGAATTTAATC
Found at i:37864231 original size:2 final size:2
Alignment explanation
Indices: 37864224--37864248 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37864214 ATGCGTGAAT
37864224 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
37864249 ATGCACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:37864245 original size:69 final size:69
Alignment explanation
Indices: 37864161--37864291 Score: 244
Period size: 69 Copynumber: 1.9 Consensus size: 69
37864151 GAATATATAT
37864161 AGAGAGAGAGAGAGAGAGAATGCACATGCAACTATAAAAGGTATATATGTAAGATGCGTGAATAG
1 AGAGAGAGAGAGAGAGAGAATGCACATGCAACTATAAAAGGTATATATGTAAGATGCGTGAATAG
37864226 AGAG
66 AGAG
* *
37864230 AGAGAGAGAGAGAGAGAGAATGCACATGTAATTATAAAAGGTATATATGTAAGATGCGTGAA
1 AGAGAGAGAGAGAGAGAGAATGCACATGCAACTATAAAAGGTATATATGTAAGATGCGTGAA
37864292 AATGTATAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.45, C:0.06, G:0.30, T:0.19
Consensus pattern (69 bp):
AGAGAGAGAGAGAGAGAGAATGCACATGCAACTATAAAAGGTATATATGTAAGATGCGTGAATAG
AGAG
Found at i:37866707 original size:31 final size:29
Alignment explanation
Indices: 37866659--37866738 Score: 79
Period size: 31 Copynumber: 2.7 Consensus size: 29
37866649 ATCCCAAAAC
* * *
37866659 TATACATCAACTATGATTTAATATGCAATTG
1 TATACATGAACTTTGATTT--TATACAATTG
* *
37866690 TATACATGAACTTTGATTTTTTACAATTT
1 TATACATGAACTTTGATTTTATACAATTG
*
37866719 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
37866739 GATCCAAATC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 15 0.36
30 10 0.24
31 17 0.40
ACGTcount: A:0.35, C:0.10, G:0.09, T:0.46
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTATACAATTG
Found at i:37866975 original size:29 final size:27
Alignment explanation
Indices: 37866909--37866975 Score: 62
Period size: 31 Copynumber: 2.3 Consensus size: 27
37866899 GAGTTTCACG
*
37866909 TGTATAATTGCACCAAATTAAAATTCA
1 TGTATAATTGCACCAAATCAAAATTCA
* * *
37866936 TATATACAATTGCACATTAAATCAAAGTTCA
1 TGTAT--AATTGCAC--CAAATCAAAATTCA
37866967 TGTATAATT
1 TGTATAATT
37866976 TTGAGATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 4 0.13
29 12 0.39
31 15 0.48
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.36
Consensus pattern (27 bp):
TGTATAATTGCACCAAATCAAAATTCA
Found at i:37868061 original size:13 final size:13
Alignment explanation
Indices: 37868027--37868068 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
37868017 CGGAAGAAAT
37868027 AAGAAGGAAGG--
1 AAGAAGGAAGGAA
*
37868038 AAGCA-GAAGGAA
1 AAGAAGGAAGGAA
37868050 AAGAAGGAAGGAA
1 AAGAAGGAAGGAA
37868063 AAGAAG
1 AAGAAG
37868069 AAAAAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 5 0.19
11 4 0.15
12 4 0.15
13 13 0.50
ACGTcount: A:0.60, C:0.02, G:0.38, T:0.00
Consensus pattern (13 bp):
AAGAAGGAAGGAA
Found at i:37868074 original size:23 final size:24
Alignment explanation
Indices: 37868019--37868074 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
37868009 TAGAGAAACG
* *
37868019 GAAGAAATAAGAAGGAAGGAAGCA
1 GAAGAAAAAAGAAGGAAGGAAGAA
*
37868043 GAAG-GAAAAGAAGGAAGGAA-AA
1 GAAGAAAAAAGAAGGAAGGAAGAA
37868065 GAAGAAAAAA
1 GAAGAAAAAA
37868075 AATAAGGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 5 0.19
23 18 0.67
24 4 0.15
ACGTcount: A:0.64, C:0.02, G:0.32, T:0.02
Consensus pattern (24 bp):
GAAGAAAAAAGAAGGAAGGAAGAA
Found at i:37870965 original size:12 final size:12
Alignment explanation
Indices: 37870948--37870975 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
37870938 GGTTTGAATC
37870948 ACAAAATTGTCT
1 ACAAAATTGTCT
37870960 ACAAAATTGTCT
1 ACAAAATTGTCT
37870972 ACAA
1 ACAA
37870976 TTTGAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (12 bp):
ACAAAATTGTCT
Found at i:37871100 original size:22 final size:22
Alignment explanation
Indices: 37871072--37871113 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
37871062 AACCCCTAAT
*
37871072 ATTACAATATTCATATAAAAAA
1 ATTACAATATTCATACAAAAAA
37871094 ATTACAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
37871114 TTACAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
ATTACAATATTCATACAAAAAA
Found at i:37871115 original size:19 final size:19
Alignment explanation
Indices: 37871072--37871228 Score: 110
Period size: 19 Copynumber: 8.2 Consensus size: 19
37871062 AACCCCTAAT
*
37871072 ATTACAATATTCATATAAAAAA
1 ATTACAATATTC--AT-ACAAA
37871094 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
* *
37871113 ATTACAAAATTACA-A-TAA
1 ATTACAATATT-CATACAAA
* *
37871131 ATT--TA-ATT-ATAAAATA
1 ATTACAATATTCATACAA-A
*
37871147 ATTACAATATTCATACAAC
1 ATTACAATATTCATACAAA
*
37871166 ATTACAATATTCATAAAAA
1 ATTACAATATTCATACAAA
* *
37871185 AATATAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
*
37871206 AGTTAAAATATTCATACAAA
1 A-TTACAATATTCATACAAA
37871226 ATT
1 ATT
37871229 CTAATCTAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 25
0.73 0.10 0.17
Matches are distributed among these distances:
13 1 0.01
14 1 0.01
15 4 0.04
16 5 0.05
18 6 0.06
19 50 0.46
20 13 0.12
21 4 0.04
22 25 0.23
ACGTcount: A:0.56, C:0.11, G:0.01, T:0.32
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:37871392 original size:3 final size:3
Alignment explanation
Indices: 37871384--37871416 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
37871374 TTTTCTTTCT
*
37871384 TTC TTC TTC TTC TTC TTC TCC TTC -TC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
37871417 CCTTTCTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:37871428 original size:14 final size:13
Alignment explanation
Indices: 37871380--37871428 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
37871370 CCTTTTTTCT
* *
37871380 TTCTTTCTTCTTC
1 TTCTCTCTTCTCC
37871393 TTCT-TCTTCTCC
1 TTCTCTCTTCTCC
37871405 TTCTCTTCTTCTCC
1 TTCTC-TCTTCTCC
37871419 TTTCTCTCTT
1 -TTCTCTCTT
37871429 TTTTTTTCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
12 11 0.34
13 4 0.12
14 12 0.38
15 5 0.16
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TTCTCTCTTCTCC
Found at i:37871586 original size:27 final size:27
Alignment explanation
Indices: 37871554--37871618 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
37871544 GAAGGCCAAC
*
37871554 CATTGGTGCCTCTCAATGAGGCACCTT
1 CATTGGCGCCTCTCAATGAGGCACCTT
**
37871581 CATTGGCGCCTCTTTATGAGGCACCTT
1 CATTGGCGCCTCTCAATGAGGCACCTT
37871608 CATTGGCGCCT
1 CATTGGCGCCT
37871619 ACCTGATAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (27 bp):
CATTGGCGCCTCTCAATGAGGCACCTT
Found at i:37871629 original size:27 final size:27
Alignment explanation
Indices: 37871569--37871629 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
37871559 GTGCCTCTCA
* *
37871569 ATGAGGCACCTTCATTGGCGCCTCTTT
1 ATGAGGCACCTTCATTGGCGCCTCCTG
37871596 ATGAGGCACCTTCATTGGCGCCTACCTG
1 ATGAGGCACCTTCATTGGCGCCT-CCTG
37871624 AT-AGGC
1 ATGAGGC
37871630 GCCACCCGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.18, C:0.30, G:0.25, T:0.28
Consensus pattern (27 bp):
ATGAGGCACCTTCATTGGCGCCTCCTG
Found at i:37871740 original size:28 final size:26
Alignment explanation
Indices: 37871687--37871745 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
37871677 TTTAAAAAAA
37871687 TATT-AAAAAATATAAAATTATATTT
1 TATTCAAAAAATATAAAATTATATTT
* *
37871712 TATTCAAAAAATATATATATTATTTTTT
1 TATTCAAAAAATATA-AAATTA-TATTT
37871740 TATTCA
1 TATTCA
37871746 TTGGCGCCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 4 0.14
26 10 0.34
27 5 0.17
28 10 0.34
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (26 bp):
TATTCAAAAAATATAAAATTATATTT
Found at i:37877148 original size:16 final size:17
Alignment explanation
Indices: 37877111--37877157 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
37877101 GGGTGAGAAG
37877111 TAAAAGTTTAGGGGAAA
1 TAAAAGTTTAGGGGAAA
* *
37877128 AAAAAGTTTTGGGG-AA
1 TAAAAGTTTAGGGGAAA
37877144 TAAAAGTTTGAGGG
1 TAAAAGTTT-AGGG
37877158 AAAGTAAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.26
Consensus pattern (17 bp):
TAAAAGTTTAGGGGAAA
Found at i:37885699 original size:26 final size:27
Alignment explanation
Indices: 37885645--37885707 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
37885635 CGTTTTTGGT
37885645 ATATTTTGGTAAATAAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
*
37885672 ATATTTTGGTAAATAAAAAAAGTT-TA
1 ATATTTTGGTAAATAAAAAAAATTATA
37885698 ATATTTTGGT
1 ATATTTTGGT
37885708 TATTTTTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
26 12 0.34
27 23 0.66
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAATTATA
Found at i:37886143 original size:31 final size:31
Alignment explanation
Indices: 37886105--37886169 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
37886095 TAACGATAAC
*
37886105 TTTT-AAAAATTATAAATGATTTA-ATTAAAAT
1 TTTTAAAAAATT-TAAAAGATTTAGA-TAAAAT
37886136 TTTTAAAAAATTTAAAAGATTTAGATAAAAT
1 TTTTAAAAAATTTAAAAGATTTAGATAAAAT
37886167 TTT
1 TTT
37886170 GAAACTATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 23 0.74
32 8 0.26
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.45
Consensus pattern (31 bp):
TTTTAAAAAATTTAAAAGATTTAGATAAAAT
Found at i:37889116 original size:134 final size:135
Alignment explanation
Indices: 37888777--37889420 Score: 686
Period size: 134 Copynumber: 4.8 Consensus size: 135
37888767 CTGAATTTCG
* * * *
37888777 GATATGATCATATGAA-TCACATGGAGTCG-TTTTATCCATTTGACTTATATGTTGTGTCTCTCT
1 GATATGATCATACGAACT-GCATGGAGTCGCTTTTTTCCATTTGGCTTATATG--GTGTCTCTCT
* ** *
37888840 TCCCCAAATCTTTTGTCAGGAGTAGG-TTACCTTTTAGATTTAGGAT-C--CCAATGATCA--C-
63 TCCCTAAATC-TTTGTCTTGAGT-GGTTTATCTTTTAGATTTAGGATCCATCCAATGATCACTCT
37888898 -TGAGTTACA
126 TTGAGTTACA
* * * * *
37888907 GATATGATCATACAAATTGCATGGAGTTTGTTTTTTTCCATTTGGCTTATGGTGGTGTCTCTCTT
1 GATATGATCATACGAACTGCATGGAG-TCGCTTTTTTCCATTTGGCTTAT-ATGGTGTCTCTCTT
37888972 CCCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAATGATCACTCTTTG
64 CCCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAATGATCACTCTTTG
37889037 AGTTACA
129 AGTTACA
* *
37889044 GATATGA-CAGACGAACT-CATGGAGTCTGCTTTTTTCCATTTGGCTTATATGGTGTCTCTTTTC
1 GATATGATCATACGAACTGCATGGAGTC-GCTTTTTTCCATTTGGCTTATATGGTGTCTCTCTTC
* *
37889107 CCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATTC-AT--T-GCT-TTCTG
65 CCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAATGATCACTCTT-TG
* **
37889167 AATTATG
129 AGTTACA
** * * *
37889174 GATACAATCATATGAA-TGGCATGGAGTC-CATTTTATCCATTTGACTTATATGTTGTGTCTCTC
1 GATATGATCATACGAACT-GCATGGAGTCGC-TTTTTTCCATTTGGCTTATATG--GTGTCTCTC
* ** * *
37889237 TTCCCCAAATCTTTTGTCACGAGTGGTTTACCTTTTAGATTTAGGAT-C--CCAATGGTCACTCT
62 TTCCCTAAATC-TTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAATGATCACTCT
*
37889299 CTGAGTTACA
126 TTGAGTTACA
* *
37889309 GATATGATCATATGAA-TCGCAAGGAGTCCGCTTTTTTCCATTTGGCTTATATGGTGTCTCTCTT
1 GATATGATCATACGAACT-GCATGGAGT-CGCTTTTTTCCATTTGGCTTATATGGTGTCTCTCTT
37889373 CCCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCAT
64 CCCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCAT
37889421 TCATTACTTT
Statistics
Matches: 433, Mismatches: 50, Indels: 56
0.80 0.09 0.10
Matches are distributed among these distances:
129 4 0.01
130 65 0.15
131 51 0.12
132 28 0.06
133 65 0.15
134 115 0.27
135 59 0.14
136 29 0.07
137 17 0.04
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (135 bp):
GATATGATCATACGAACTGCATGGAGTCGCTTTTTTCCATTTGGCTTATATGGTGTCTCTCTTCC
CTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAATGATCACTCTTTGAG
TTACA
Found at i:37889198 original size:267 final size:266
Alignment explanation
Indices: 37888736--37889565 Score: 922
Period size: 267 Copynumber: 3.1 Consensus size: 266
37888726 GAGTGGCTCT
* * * * * * * * * *
37888736 CTTTTGAGA-TTAGGATCCCATTCATTACTTTCTGAATTTCGGATATGATCATATGAATCACATG
1 CTTTT-AGATTTAGGATCCCAATGATCACTCTCTGAGTTACAGATATGATCAGACGAATCGCATG
* * * **
37888800 GAGTCG-TTTTATCCATTTGACTTATATGTTGTGTCTCTCTTCCCCAAATCTTTTGTCAGGAGTA
65 GAGTCGCTTTTTTCCATTTGGCTTATATG--GTGTCTCTCTTCCCTAAATC-TTTGTCTTGAGT-
* * * ** * ** ** *
37888864 GG-TTACCTTTTAGATTTAGGATCC---CAATGATCACTGAGTTACAGATATGATCATACAAATT
126 GGTTTATCTTTTAGATTTAGGATCCATTCATTGCTTTCTGAATTATGGATACAATCATACAAATG
*** * * * *
37888925 GCATGGAGTTTGTTTTTTTCCATTTGGCTTAT-GGTGGTGTCTCTCTTCCCTAAATC-TTTGTCT
191 GCATGGAG-TCCATTTTATCCATTTGACTTATAGGTGGTGTCTCTCTTCCCCAAATCTTTTGTCA
* *
37888988 TGAGTGGTTTAT
255 CGAGTGGTTTAC
* *
37889000 CTTTTAGATTTAGGATCCATCCAATGATCACTCTTTGAGTTACAGATATGA-CAGACGAA-CTCA
1 CTTTTAGATTTAGGAT-C--CCAATGATCACTCTCTGAGTTACAGATATGATCAGACGAATCGCA
*
37889063 TGGAGTCTGCTTTTTTCCATTTGGCTTATATGGTGTCTCTTTTCCCTAAATCTTTGTCTTGAGTG
63 TGGAGTC-GCTTTTTTCCATTTGGCTTATATGGTGTCTCTCTTCCCTAAATCTTTGTCTTGAGTG
**
37889128 GTTTATCTTTTAGATTTAGGATCCATTCATTGCTTTCTGAATTATGGATACAATCATATGAATGG
127 GTTTATCTTTTAGATTTAGGATCCATTCATTGCTTTCTGAATTATGGATACAATCATACAAATGG
* *
37889193 CATGGAGTCCATTTTATCCATTTGACTTATATGTTGTGTCTCTCTTCCCCAAATCTTTTGTCACG
192 CATGGAGTCCATTTTATCCATTTGACTTATAGGTGGTGTCTCTCTTCCCCAAATCTTTTGTCACG
37889258 AGTGGTTTAC
257 AGTGGTTTAC
* * * *
37889268 CTTTTAGATTTAGGATCCCAATGGTCACTCTCTGAGTTACAGATATGATCATATGAATCGCAAGG
1 CTTTTAGATTTAGGATCCCAATGATCACTCTCTGAGTTACAGATATGATCAGACGAATCGCATGG
37889333 AGTCCGCTTTTTTCCATTTGGCTTATATGGTGTCTCTCTTCCCTAAATCTTTGTCTTGAGTGGTT
66 AGT-CGCTTTTTTCCATTTGGCTTATATGGTGTCTCTCTTCCCTAAATCTTTGTCTTGAGTGGTT
* * *
37889398 TATCTTTTAGATTTAGGATCCATTCATTACTTTCTGAATTATGGATACAATCACACAAATAGCAT
130 TATCTTTTAGATTTAGGATCCATTCATTGCTTTCTGAATTATGGATACAATCATACAAATGGCAT
* * *
37889463 AGAGTCCATTTTATCCATTTGACTTA-A------ATCTCTCTTCCCCAAATC-TTTGTCACGATT
195 GGAGTCCATTTTATCCATTTGACTTATAGGTGGTGTCTCTCTTCCCCAAATCTTTTGTCACGAGT
37889520 GGTTTAC
260 GGTTTAC
* * ** *
37889527 CTTTTAGATTTAGGATACCATTGATTGCTTTCTGAGTTA
1 CTTTTAGATTTAGGATCCCAATGATCACTCTCTGAGTTA
37889566 TGGATACAAT
Statistics
Matches: 489, Mismatches: 62, Indels: 35
0.83 0.11 0.06
Matches are distributed among these distances:
259 51 0.10
260 17 0.03
263 5 0.01
264 43 0.09
265 58 0.12
266 32 0.07
267 250 0.51
268 33 0.07
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (266 bp):
CTTTTAGATTTAGGATCCCAATGATCACTCTCTGAGTTACAGATATGATCAGACGAATCGCATGG
AGTCGCTTTTTTCCATTTGGCTTATATGGTGTCTCTCTTCCCTAAATCTTTGTCTTGAGTGGTTT
ATCTTTTAGATTTAGGATCCATTCATTGCTTTCTGAATTATGGATACAATCATACAAATGGCATG
GAGTCCATTTTATCCATTTGACTTATAGGTGGTGTCTCTCTTCCCCAAATCTTTTGTCACGAGTG
GTTTAC
Found at i:37889482 original size:398 final size:391
Alignment explanation
Indices: 37888716--37889612 Score: 1116
Period size: 398 Copynumber: 2.3 Consensus size: 391
37888706 AGATATCCTT
* * * *
37888716 TCTTTGTCATGAGTGG-CTCTCTTTTGAGA-TTAGGATCCCATTCATTACTTTCTGAATT-TCGG
1 TCTTTGTCATGAGTGGTTTATCTTTT-AGATTTAGGATACCATTCATTGCTTTCTGAATTAT-GG
** * *
37888778 ATATGATCATATGAATCACATGGAGTCGTTTTATCCATTTGACTTATATGTTGTGTCTCTCTTCC
64 ATACAATCATATGAATCGCATGGAGTCATTTTATCCATTTGACTTATATGTTGTGTCTCTCTTCC
*
37888843 CCAAATCTTTTGTCAGGAGTAGGTTACCTTTTAGATTTAGGATCCCAATGATCACTGAGTTACAG
129 CCAAATCTTTTGTCACGAGTAGGTTACCTTTTAGATTTAGGATCCCAATGATCACTGAGTTACAG
* * ** * *
37888908 ATATGATCATACAAATTGCATGGAGTTTGTTTTTTTCCATTTGGCTTATGGTGGTGTCTCTCTTC
194 ATATGATCATACAAATCGCAAGGAGTCCGCTTTTTTCCATTTGGCTTATGATGGTGTCTCTCTTC
37888973 CCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAATGATCACTCTTTGA
259 CCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAAT-ATCACTCTTTGA
* ** * * * * * *
37889038 GTTACAGATATGACAGACGAACTCATGGAGTCTGCTTTTTTCCATTTGGCTTATATGGTGTCTCT
323 ATTACAGATACAACACACGAAATCATAGAGTC-GCTTTTATCCATTTGACTTA-A----ATCTCT
* *
37889103 TTTCCCTAAA
382 CTTCCCCAAA
*
37889113 TCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGAT-CCATTCATTGCTTTCTGAATTATGGAT
1 TCTTTGTCATGAGTGGTTTATCTTTTAGATTTAGGATACCATTCATTGCTTTCTGAATTATGGAT
*
37889177 ACAATCATATGAATGGCATGGAGTCCATTTTATCCATTTGACTTATATGTTGTGTCTCTCTTCCC
66 ACAATCATATGAATCGCATGGAGT-CATTTTATCCATTTGACTTATATGTTGTGTCTCTCTTCCC
*
37889242 CAAATCTTTTGTCACGAGT-GGTTTACCTTTTAGATTTAGGATCCCAATGGTCACTCTCTGAGTT
130 CAAATCTTTTGTCACGAGTAGG-TTACCTTTTAGATTTAGGATCCCAAT-G--A-TCACTGAGTT
**
37889306 ACAGATATGATCATATGAATCGCAAGGAGTCCGCTTTTTTCCATTTGGCTTAT-ATGGTGTCTCT
190 ACAGATATGATCATACAAATCGCAAGGAGTCCGCTTTTTTCCATTTGGCTTATGATGGTGTCTCT
*
37889370 CTTCCCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATTC-AT-T-ACT-TT
255 CTTCCCTAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAATATCACTCTT
**
37889431 CTGAATTATGGATACAATCACAC-AAATAGCATAGAGTC-CATTTTATCCATTTGACTTAAATCT
320 -TGAATTACAGATACAA-CACACGAAAT--CATAGAGTCGC-TTTTATCCATTTGACTTAAATCT
37889494 CTCTTCCCCAAA
380 CTCTTCCCCAAA
* * * * *
37889506 TCTTTGTCACGATTGGTTTACCTTTTAGATTTAGGATACCATTGATTGCTTTCTGAGTTATGGAT
1 TCTTTGTCATGAGTGGTTTATCTTTTAGATTTAGGATACCATTCATTGCTTTCTGAATTATGGAT
* ** **
37889571 ACAATCTTACAAATCGCATGGAGTTTGTTTTTATCCATTTGA
66 ACAATCATATGAATCGCATGGAG--TCATTTTATCCATTTGA
37889613 TCTCCTTTGG
Statistics
Matches: 438, Mismatches: 45, Indels: 36
0.84 0.09 0.07
Matches are distributed among these distances:
393 46 0.11
394 44 0.10
395 14 0.03
396 3 0.01
397 83 0.19
398 119 0.27
399 9 0.02
400 2 0.00
401 63 0.14
402 55 0.13
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.41
Consensus pattern (391 bp):
TCTTTGTCATGAGTGGTTTATCTTTTAGATTTAGGATACCATTCATTGCTTTCTGAATTATGGAT
ACAATCATATGAATCGCATGGAGTCATTTTATCCATTTGACTTATATGTTGTGTCTCTCTTCCCC
AAATCTTTTGTCACGAGTAGGTTACCTTTTAGATTTAGGATCCCAATGATCACTGAGTTACAGAT
ATGATCATACAAATCGCAAGGAGTCCGCTTTTTTCCATTTGGCTTATGATGGTGTCTCTCTTCCC
TAAATCTTTGTCTTGAGTGGTTTATCTTTTAGATTTAGGATCCATCCAATATCACTCTTTGAATT
ACAGATACAACACACGAAATCATAGAGTCGCTTTTATCCATTTGACTTAAATCTCTCTTCCCCAA
A
Found at i:37891998 original size:42 final size:42
Alignment explanation
Indices: 37891946--37892028 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
37891936 TTAATACAAT
* *
37891946 ATTAAAATTTTGCAAACGAATGATGATTCTAATATAGTGTAA
1 ATTAAAATTTTGCAAACGAATGATGATTCCAATACAGTGTAA
* ** *
37891988 ATTAATATTTTGCAAATTAATGGTGATTCCAATACAGTGTA
1 ATTAAAATTTTGCAAACGAATGATGATTCCAATACAGTGTA
37892029 CTTAGCCACC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.37
Consensus pattern (42 bp):
ATTAAAATTTTGCAAACGAATGATGATTCCAATACAGTGTAA
Done.