Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 12 of 141
Found at i:3884836 original size:45 final size:45
Alignment explanation
Indices: 3884797--3885202 Score: 210
Period size: 44 Copynumber: 9.3 Consensus size: 45
3884787 CCACTACAAT
*
3884797 TTCAGGGGGATAAGACTTGATTTCTTGAGTCTGCTCCACTGTAAC
1 TTCAGGGAGATAAGACTTGATTTCTTGAGTCTGCTCCACTGTAAC
* * *
3884842 TTCAGGGAGATAAGACTCGCTTTCTTGGGTCTGCTCCACTGTAAC
1 TTCAGGGAGATAAGACTTGATTTCTTGAGTCTGCTCCACTGTAAC
* * * *
3884887 TTCAGGGAGATAAGACCTGA-TGC--GA-TCTGCT-CTCTGCAAC
1 TTCAGGGAGATAAGACTTGATTTCTTGAGTCTGCTCCACTGTAAC
* ** * ** *
3884927 TTTAGAAAGATAAGATCTGTGA--T-TTGAATCCACTCCACTGCAAC
1 TTCAGGGAGATAAGA-CT-TGATTTCTTGAGTCTGCTCCACTGTAAC
* * * * **
3884971 TTTAGGGAGATAAGA-TT-CTCCATCTTCAGTCTGC-CTCACTACAAC
1 TTCAGGGAGATAAGACTTGAT--TTCTTGAGTCTGCTC-CACTGTAAC
* * * **
3885016 TTCA-GGAGGATAAGGCTTGCTTACTT-AGTCTGCTCCACTACAAC
1 TTCAGGGA-GATAAGACTTGATTTCTTGAGTCTGCTCCACTGTAAC
* * * *
3885060 TTCAGGGAGATAAGACTAGA-TGC--GA-TCTGCT-CTCTGCAAC
1 TTCAGGGAGATAAGACTTGATTTCTTGAGTCTGCTCCACTGTAAC
* * * ***
3885100 TTCAGAGAGATAAGATCTGTGA-TT-TT-AATCCGCTCCACTACGAC
1 TTCAGGGAGATAAGA-CT-TGATTTCTTGAGTCTGCTCCACTGTAAC
* * * *
3885144 TTCAGGGAGATAAGA-TT-ATTCGCTTTAATCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGACTTGATT-TCTTGAGTCTGCTCCACTGTAAC
3885188 TTCAGGGAGATAAGA
1 TTCAGGGAGATAAGA
3885203 TTCGTCATCT
Statistics
Matches: 284, Mismatches: 49, Indels: 57
0.73 0.13 0.15
Matches are distributed among these distances:
40 41 0.14
41 18 0.06
42 13 0.05
43 13 0.05
44 107 0.38
45 88 0.31
46 2 0.01
47 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (45 bp):
TTCAGGGAGATAAGACTTGATTTCTTGAGTCTGCTCCACTGTAAC
Found at i:3884978 original size:84 final size:84
Alignment explanation
Indices: 3884874--3885158 Score: 281
Period size: 84 Copynumber: 3.3 Consensus size: 84
3884864 TCTTGGGTCT
** *
3884874 GCTCCACTGTAACTTCAGGGAGATAAGACCT-GATGCGATCTGCTCTCTGCAACTTTAGAAAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGA-CTAGATGCGATCTGCTCTCTGCAACTTCAGAAAGAT
*
3884938 AAGATCTGTGATTTGAATCC
65 AAGATCTGTGATTTTAATCC
* * * ** * * * *
3884958 ACTCCACTGCAACTTTAGGGAGATAAGATTCTCCAT-CTTCAGTCTGCCTCACTACAACTTCAGG
1 GCTCCACTACAACTTCAGGGAGATAAGA--CTAGATGC--GA-TCTG-CTCTCTGCAACTTCAGA
* * * * *
3885022 AGGATAAG-GCT-TGCTTACTTAGTCT
60 AAGATAAGATCTGTGATT--TTAATCC
*
3885047 GCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
1 GCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAAAGATA
3885112 AGATCTGTGATTTTAATCC
66 AGATCTGTGATTTTAATCC
*
3885131 GCTCCACTACGACTTCAGGGAGATAAGA
1 GCTCCACTACAACTTCAGGGAGATAAGA
3885159 TTATTCGCTT
Statistics
Matches: 158, Mismatches: 32, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
84 77 0.49
85 9 0.06
86 7 0.04
87 9 0.06
88 7 0.04
89 49 0.31
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (84 bp):
GCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAAAGATA
AGATCTGTGATTTTAATCC
Found at i:3885084 original size:173 final size:174
Alignment explanation
Indices: 3884839--3885202 Score: 495
Period size: 173 Copynumber: 2.1 Consensus size: 174
3884829 GCTCCACTGT
* * **
3884839 AACTTCAGGGAGATAAGACTCGCTTTCTTGGGTCTGCTCCACTGTAACTTCAGGGAGATAAGACC
1 AACTTCAGGGAGATAAGACTCGCTTACTTGAGTCTGCTCCACTACAACTTCAGGGAGATAAGACC
* *
3884904 TGATGCGATCTGCTCTCTGCAACTTTAGAAAGATAAGATCTGTGATTTGAATCCACTCCACTGCA
66 TGATGCGATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGTGATTTGAATCCACTCCACTACA
*
3884969 ACTTTAGGGAGATAAGATTCTCCATCTTCAGTCTGCCTCACTAC
131 ACTTCAGGGAGATAAGATTCTCCATCTTCAGTCTGCCTCACTAC
* *
3885013 AACTTCA-GGAGGATAAGGCTTGCTTACTT-AGTCTGCTCCACTACAACTTCAGGGAGATAAGA-
1 AACTTCAGGGA-GATAAGACTCGCTTACTTGAGTCTGCTCCACTACAACTTCAGGGAGATAAGAC
* * *
3885075 CTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTA
65 CT-GATGCGATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGTGATTTGAATCCACTCCACTA
* * * * * * *
3885140 CGACTTCAGGGAGATAAGATTATTC-GCTTTAATCTG-CTCCACTGC
129 CAACTTCAGGGAGATAAGATTCTCCATCTTCAGTCTGCCT-CACTAC
3885185 AACTTCAGGGAGATAAGA
1 AACTTCAGGGAGATAAGA
3885203 TTCGTCATCT
Statistics
Matches: 166, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
171 2 0.01
172 28 0.17
173 114 0.69
174 22 0.13
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (174 bp):
AACTTCAGGGAGATAAGACTCGCTTACTTGAGTCTGCTCCACTACAACTTCAGGGAGATAAGACC
TGATGCGATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGTGATTTGAATCCACTCCACTACA
ACTTCAGGGAGATAAGATTCTCCATCTTCAGTCTGCCTCACTAC
Found at i:3886528 original size:19 final size:19
Alignment explanation
Indices: 3886504--3886595 Score: 130
Period size: 19 Copynumber: 4.8 Consensus size: 19
3886494 AATCATATCT
*
3886504 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
3886523 TCTAAGATTACACATCATA
1 TCTAAGATTACATATCATA
*
3886542 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
**
3886561 TCTAAGATTACATATTGTA
1 TCTAAGATTACATATCATA
*
3886580 TCTAAGATTCCATATC
1 TCTAAGATTACATATC
3886596 CTTGACATAT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 64 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:3886551 original size:38 final size:38
Alignment explanation
Indices: 3886504--3886595 Score: 148
Period size: 38 Copynumber: 2.4 Consensus size: 38
3886494 AATCATATCT
3886504 TCTAAGATTGCATATCATATCTAAGATTACACATCATA
1 TCTAAGATTGCATATCATATCTAAGATTACACATCATA
* **
3886542 TCTAAGATTGCATATCATATCTAAGATTACATATTGTA
1 TCTAAGATTGCATATCATATCTAAGATTACACATCATA
*
3886580 TCTAAGATTCCATATC
1 TCTAAGATTGCATATC
3886596 CTTGACATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTACACATCATA
Found at i:3889589 original size:26 final size:26
Alignment explanation
Indices: 3889559--3889624 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
3889549 TGGTTTCCAT
* * *
3889559 AAAGGCTTCCATTTCGGATACGCCAC
1 AAAGGCTTCCATTTCAGATACACCAA
*
3889585 AAAGGCTTCCCTTTCAGATACACCAA
1 AAAGGCTTCCATTTCAGATACACCAA
*
3889611 AAAGGCTTCAATTT
1 AAAGGCTTCCATTT
3889625 TATAGATTGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (26 bp):
AAAGGCTTCCATTTCAGATACACCAA
Found at i:3894454 original size:20 final size:20
Alignment explanation
Indices: 3894429--3894495 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 20
3894419 CTTTTATCTA
3894429 TACATCTCTAGATGTACTTG
1 TACATCTCTAGATGTACTTG
*
3894449 TACATCTCCCCTAATATGTACATT-
1 TACATCT---CT-AGATGTAC-TTG
*
3894473 TACATCTCTAGTTGTACTTG
1 TACATCTCTAGATGTACTTG
3894493 TAC
1 TAC
3894496 TTTTCCCTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
19 2 0.05
20 16 0.42
21 2 0.05
23 2 0.05
24 14 0.37
25 2 0.05
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.40
Consensus pattern (20 bp):
TACATCTCTAGATGTACTTG
Found at i:3898115 original size:16 final size:16
Alignment explanation
Indices: 3898071--3898118 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
3898061 ATCAAAACCA
3898071 CAAGCTCACCAAAAATG
1 CAAGCTCA-CAAAAATG
*
3898088 CAAGCTCTACAAAACTG
1 CAAGCTC-ACAAAAATG
*
3898105 TAAGCTCACAAAAA
1 CAAGCTCACAAAAA
3898119 AAAAAGTGCG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 6 0.22
17 20 0.74
18 1 0.04
ACGTcount: A:0.48, C:0.27, G:0.10, T:0.15
Consensus pattern (16 bp):
CAAGCTCACAAAAATG
Found at i:3903233 original size:58 final size:59
Alignment explanation
Indices: 3903109--3903231 Score: 232
Period size: 58 Copynumber: 2.1 Consensus size: 59
3903099 TTTATTTATT
3903109 TATAAAATTTAAAAATCTCTAAGTTTATTTTTTAAAATTTTTAAATTTTGAATAAAAGG
1 TATAAAATTTAAAAATCTCTAAGTTTATTTTTTAAAATTTTTAAATTTTGAATAAAAGG
3903168 TATAAAATTT-AAAATCTCTAAGTTTATTTTTTAAAATTTTTAAATTTTGAATAAAAGG
1 TATAAAATTTAAAAATCTCTAAGTTTATTTTTTAAAATTTTTAAATTTTGAATAAAAGG
3903226 T-TAAAA
1 TATAAAA
3903232 ATATCTATTA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
57 5 0.08
58 49 0.77
59 10 0.16
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.46
Consensus pattern (59 bp):
TATAAAATTTAAAAATCTCTAAGTTTATTTTTTAAAATTTTTAAATTTTGAATAAAAGG
Found at i:3904043 original size:56 final size:55
Alignment explanation
Indices: 3903949--3904105 Score: 215
Period size: 56 Copynumber: 2.8 Consensus size: 55
3903939 TAAAGTTACA
* * * * *
3903949 TAAGAATCAAATTGTTTAAAGATAATATCCCATCATAATATCCTATAATATCTCAT
1 TAAGAATCAAATTG-CTAAAGATAATATCTCATAATAATATCCTATAACATCCCAT
*
3904005 TAAGAATCAAATTGCTAAGAGATAATATCTCATAATAATATCTTATAACATCCCAT
1 TAAGAATCAAATTGCTAA-AGATAATATCTCATAATAATATCCTATAACATCCCAT
* *
3904061 TAGGAATCAAATTGCTAAAAGATAATATCTCATAATTATATCCTA
1 TAAGAATCAAATTGCT-AAAGATAATATCTCATAATAATATCCTA
3904106 ACACTTTTAC
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
55 3 0.03
56 85 0.94
57 2 0.02
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (55 bp):
TAAGAATCAAATTGCTAAAGATAATATCTCATAATAATATCCTATAACATCCCAT
Found at i:3904319 original size:1 final size:1
Alignment explanation
Indices: 3904309--3904369 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
3904299 ATGTCTACTG
* * * * * * *
3904309 TTTTTCTTTTTCTTTTTCTTTTTTTCTTTTCTTTTTTTTCTTTTTTCTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3904370 GGTACAAAGT
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (1 bp):
T
Found at i:3904320 original size:6 final size:6
Alignment explanation
Indices: 3904309--3904369 Score: 67
Period size: 6 Copynumber: 10.7 Consensus size: 6
3904299 ATGTCTACTG
* *
3904309 TTTTTC TTTTTC TTTTTC TTTTTT TCTTTTC TTTTT- TTTCT- TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC TTTTTC
3904356 TTTTT- TTTTT- TTTT
1 TTTTTC TTTTTC TTTT
3904370 GGTACAAAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
5 17 0.35
6 27 0.55
7 5 0.10
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (6 bp):
TTTTTC
Found at i:3904349 original size:22 final size:22
Alignment explanation
Indices: 3904309--3904369 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
3904299 ATGTCTACTG
*
3904309 TTTTTCTTTTTCTTTTTCTTTT
1 TTTTTTTTTTTCTTTTTCTTTT
*
3904331 TTTCTTTTCTTT-TTTTTCTTTT
1 TTT-TTTTTTTTCTTTTTCTTTT
3904353 TTCTTTTTTTTT-TTTTT
1 TT-TTTTTTTTTCTTTTT
3904370 GGTACAAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (22 bp):
TTTTTTTTTTTCTTTTTCTTTT
Found at i:3904368 original size:14 final size:14
Alignment explanation
Indices: 3904309--3904369 Score: 79
Period size: 14 Copynumber: 4.4 Consensus size: 14
3904299 ATGTCTACTG
*
3904309 TTTTTCTTTTTCTT
1 TTTTTTTTTTTCTT
*
3904323 TTTCTTTTTTTCTT
1 TTTTTTTTTTTCTT
*
3904337 TTCTTTTTTTTCTT
1 TTTTTTTTTTTCTT
3904351 TTTTCTTTTTTT-TT
1 TTTT-TTTTTTTCTT
3904365 TTTTT
1 TTTTT
3904370 GGTACAAAGT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
13 1 0.02
14 33 0.80
15 7 0.17
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTTTCTT
Found at i:3907552 original size:26 final size:26
Alignment explanation
Indices: 3907522--3907571 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3907512 ATTTGTGAAG
3907522 TTGTTCAGTTTTTGACGCAGAATTGT
1 TTGTTCAGTTTTTGACGCAGAATTGT
3907548 TTGTTCAGTTTTTGACGCAGAATT
1 TTGTTCAGTTTTTGACGCAGAATT
3907572 ATGGGGCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.12, G:0.22, T:0.46
Consensus pattern (26 bp):
TTGTTCAGTTTTTGACGCAGAATTGT
Found at i:3910049 original size:21 final size:20
Alignment explanation
Indices: 3910023--3910063 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3910013 GGACTAAATC
*
3910023 GAAAAAATATGAAATTTTTCA
1 GAAAAAAT-TAAAATTTTTCA
*
3910044 GAAAAAGTTAAAATTTTTCA
1 GAAAAAATTAAAATTTTTCA
3910064 AACTGCAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.34
Consensus pattern (20 bp):
GAAAAAATTAAAATTTTTCA
Found at i:3922919 original size:20 final size:20
Alignment explanation
Indices: 3922896--3922946 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
3922886 TTATAACGAC
**
3922896 AAAAAAATATTTTTAAATTA
1 AAAAAAATAAATTTAAATTA
* *
3922916 AAAAAATTAAATTTAACTTA
1 AAAAAAATAAATTTAAATTA
3922936 ATAAAAAATAA
1 A-AAAAAATAA
3922947 CGAAAATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAAATAAATTTAAATTA
Found at i:3923432 original size:32 final size:31
Alignment explanation
Indices: 3923371--3923433 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
3923361 CTAAATTTTC
*
3923371 AAAAAAAAAAAAGAGGCTTATAAGCCTAATT
1 AAAAAAAAAAAAGAGGCATATAAGCCTAATT
* * *
3923402 AAAAAAAAAAACAGTGGCATATATGGCTAATT
1 AAAAAAAAAAA-AGAGGCATATAAGCCTAATT
3923434 TAGCCCTCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.56, C:0.10, G:0.14, T:0.21
Consensus pattern (31 bp):
AAAAAAAAAAAAGAGGCATATAAGCCTAATT
Found at i:3924514 original size:16 final size:16
Alignment explanation
Indices: 3924493--3924523 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3924483 TTTTGCATTG
*
3924493 TTTTAATATTAAATAT
1 TTTTAAAATTAAATAT
3924509 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
3924524 ACATTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTAAAATTAAATAT
Found at i:3924626 original size:13 final size:13
Alignment explanation
Indices: 3924610--3924635 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3924600 AACACCCTAA
3924610 ACTATATATATAC
1 ACTATATATATAC
3924623 ACTATATATATAC
1 ACTATATATATAC
3924636 TTATTTTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
ACTATATATATAC
Found at i:3934361 original size:17 final size:18
Alignment explanation
Indices: 3934339--3934373 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
3934329 ACAAAAATTT
3934339 TATTTTAAGTTT-TTATA
1 TATTTTAAGTTTATTATA
*
3934356 TATTTTAATTTTATTATA
1 TATTTTAAGTTTATTATA
3934374 AAAACTAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (18 bp):
TATTTTAAGTTTATTATA
Found at i:3939720 original size:13 final size:13
Alignment explanation
Indices: 3939673--3939722 Score: 66
Period size: 13 Copynumber: 3.8 Consensus size: 13
3939663 CAAATTTTAG
*
3939673 TAAGTAATGTATT
1 TAAGTAATATATT
3939686 TAAGTAA-ATTATT
1 TAAGTAATA-TATT
3939699 TAAGTAATATATT
1 TAAGTAATATATT
*
3939712 CAAGTAATATA
1 TAAGTAATATA
3939723 ATAAAGTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 32 0.97
14 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.42
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:3939729 original size:26 final size:26
Alignment explanation
Indices: 3939674--3939731 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
3939664 AAATTTTAGT
* * * *
3939674 AAGTAATGTATTTAAGTAAATTATTT
1 AAGTAATATATTCAAGTAAATTAATA
3939700 AAGTAATATATTCAAGT-AATATAATA
1 AAGTAATATATTCAAGTAAAT-TAATA
3939726 AAGTAA
1 AAGTAA
3939732 ATTTTAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 3 0.11
26 24 0.89
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (26 bp):
AAGTAATATATTCAAGTAAATTAATA
Found at i:3939988 original size:13 final size:13
Alignment explanation
Indices: 3939970--3940028 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
3939960 CAAATTTTAG
*
3939970 TAAGTAATGTATT
1 TAAGTAATATATT
3939983 TAAGTAA-ATTATT
1 TAAGTAATA-TATT
3939996 TAAGTAATATATT
1 TAAGTAATATATT
*
3940009 CAAGTAATATATT
1 TAAGTAATATATT
*
3940022 AAAGTAA
1 TAAGTAA
3940029 ATTTTAGTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
13 40 0.98
14 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:3940008 original size:26 final size:27
Alignment explanation
Indices: 3939970--3940039 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 27
3939960 CAAATTTTAG
*
3939970 TAAGTAATGTATTTAAGTAAAT-TATT
1 TAAGTAATATATTTAAGTAAATATATT
*
3939996 TAAGTAATATATTCAAGT-AATATATT
1 TAAGTAATATATTTAAGTAAATATATT
*
3940022 AAAGTAA-AT-TTT-AGTAAA
1 TAAGTAATATATTTAAGTAAA
3940040 AAATATGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
23 3 0.08
24 4 0.11
25 5 0.13
26 26 0.68
ACGTcount: A:0.47, C:0.01, G:0.10, T:0.41
Consensus pattern (27 bp):
TAAGTAATATATTTAAGTAAATATATT
Found at i:3940008 original size:297 final size:297
Alignment explanation
Indices: 3939474--3940096 Score: 1219
Period size: 297 Copynumber: 2.1 Consensus size: 297
3939464 NNNNNNNNNN
3939474 TCATGTAGAATATACTTAACAATATATATATATATATTATCAATAAGTTAAATTAAATTGTAAAA
1 TCATGTAGAATATACTTAACAATATATATATATATATTATCAATAAGTTAAATTAAATTGTAAAA
3939539 ATATATTTAAAAATATAATAAATATTGAAATTATAATATATTTTAACAAGTTATGTAAGTAATGT
66 ATATATTTAAAAATATAATAAATATTGAAATTATAATATATTTTAACAAGTTATGTAAGTAATGT
3939604 AATATATACTTAAATTTTAGTAAGTAATATATATTTAAGTAATGTATTTAAAATTTAAACAAATT
131 AATATATACTTAAATTTTAGTAAGTAATATATATTTAAGTAATGTATTTAAAATTTAAACAAATT
3939669 TTAGTAAGTAATGTATTTAAGTAAATTATTTAAGTAATATATTCAAGTAATATAATAAAGTAAAT
196 TTAGTAAGTAATGTATTTAAGTAAATTATTTAAGTAATATATTCAAGTAATATAATAAAGTAAAT
*
3939734 TTTAGTAAAAAATATTTTTTAGTAAGTAATATGTAAG
261 TTTAGTAAAAAATATGTTTTAGTAAGTAATATGTAAG
3939771 TCATGTAGAATATACTTAACAATATATATATATATATTATCAATAAGTTAAATTAAATTGTAAAA
1 TCATGTAGAATATACTTAACAATATATATATATATATTATCAATAAGTTAAATTAAATTGTAAAA
3939836 ATATATTTAAAAATATAATAAATATTGAAATTATAATATATTTTAACAAGTTATGTAAGTAATGT
66 ATATATTTAAAAATATAATAAATATTGAAATTATAATATATTTTAACAAGTTATGTAAGTAATGT
3939901 AATATATACTTAAATTTTAGTAAGTAATATATATTTAAGTAATGTATTTAAAATTTAAACAAATT
131 AATATATACTTAAATTTTAGTAAGTAATATATATTTAAGTAATGTATTTAAAATTTAAACAAATT
*
3939966 TTAGTAAGTAATGTATTTAAGTAAATTATTTAAGTAATATATTCAAGTAATATATTAAAGTAAAT
196 TTAGTAAGTAATGTATTTAAGTAAATTATTTAAGTAATATATTCAAGTAATATAATAAAGTAAAT
3940031 TTTAGTAAAAAATATGTTTTAGTAAGTAATATGTAAG
261 TTTAGTAAAAAATATGTTTTAGTAAGTAATATGTAAG
*
3940068 TCATGTAGAATATACTTAAAAATATATAT
1 TCATGTAGAATATACTTAACAATATATAT
3940097 TTAAGTAATG
Statistics
Matches: 323, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
297 323 1.00
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.41
Consensus pattern (297 bp):
TCATGTAGAATATACTTAACAATATATATATATATATTATCAATAAGTTAAATTAAATTGTAAAA
ATATATTTAAAAATATAATAAATATTGAAATTATAATATATTTTAACAAGTTATGTAAGTAATGT
AATATATACTTAAATTTTAGTAAGTAATATATATTTAAGTAATGTATTTAAAATTTAAACAAATT
TTAGTAAGTAATGTATTTAAGTAAATTATTTAAGTAATATATTCAAGTAATATAATAAAGTAAAT
TTTAGTAAAAAATATGTTTTAGTAAGTAATATGTAAG
Found at i:3940438 original size:16 final size:16
Alignment explanation
Indices: 3940417--3940452 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
3940407 ATTAATTGAA
*
3940417 ATAAAATTGTAAATCG
1 ATAAAATTGCAAATCG
3940433 ATAAAATTGCAAATCG
1 ATAAAATTGCAAATCG
3940449 ATAA
1 ATAA
3940453 TTATAAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.28
Consensus pattern (16 bp):
ATAAAATTGCAAATCG
Found at i:3940512 original size:10 final size:10
Alignment explanation
Indices: 3940497--3940531 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
3940487 AATAATTATG
3940497 AAATTATATA
1 AAATTATATA
3940507 AAATTATATA
1 AAATTATATA
*
3940517 AAATTATTTA
1 AAATTATATA
3940527 AAATT
1 AAATT
3940532 TACCCATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
AAATTATATA
Found at i:3942800 original size:8 final size:7
Alignment explanation
Indices: 3942765--3942843 Score: 88
Period size: 7 Copynumber: 11.3 Consensus size: 7
3942755 ACCTCAAAAA
3942765 CCAAACC
1 CCAAACC
3942772 CCAAACC
1 CCAAACC
3942779 CC-AACC
1 CCAAACC
* *
3942785 CTAACCC
1 CCAAACC
3942792 CCAAACC
1 CCAAACC
3942799 CCAAACC
1 CCAAACC
* *
3942806 CTAAACA
1 CCAAACC
*
3942813 CTAAACC
1 CCAAACC
*
3942820 CTAAACC
1 CCAAACC
3942827 CCAAACC
1 CCAAACC
3942834 CCAAAACC
1 CC-AAACC
3942842 CC
1 CC
3942844 GAACAGTAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
6 5 0.08
7 50 0.81
8 7 0.11
ACGTcount: A:0.42, C:0.53, G:0.00, T:0.05
Consensus pattern (7 bp):
CCAAACC
Found at i:3943350 original size:81 final size:81
Alignment explanation
Indices: 3943225--3943375 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
3943215 CTAACTTGTA
* * * * *
3943225 CTAACCCTAAACCTTGTTTAATACATAAATTAAAAATATTAATTAATCAAAACCCTAAATCATAA
1 CTAACCCTAAACCATATTTAATACATAAATTAAAAACATTAATTAATCAAAACACTAAAGCATAA
3943290 CCTGAATCCCTAACCC
66 CCTGAATCCCTAACCC
* * *
3943306 CTAACCCTTAAACCATATTTTATA-A-AAATTAAAACACATTAATTAATCTAAACACTAAAGCCT
1 CTAACCC-TAAACCATATTTAATACATAAATTAAAA-ACATTAATTAATCAAAACACTAAAGCAT
3943369 AACCTGA
64 AACCTGA
3943376 CACCGAATCC
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 9 0.15
81 38 0.63
82 13 0.22
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (81 bp):
CTAACCCTAAACCATATTTAATACATAAATTAAAAACATTAATTAATCAAAACACTAAAGCATAA
CCTGAATCCCTAACCC
Found at i:3944131 original size:114 final size:111
Alignment explanation
Indices: 3943889--3944299 Score: 303
Period size: 114 Copynumber: 3.6 Consensus size: 111
3943879 GTTACACAAA
* * * * *
3943889 CGCCGCTAATGA-TATACTTTAGCGGCGTTTTTCATCAAGCGCCACTAATT-CTAATACT-CCTC
1 CGCCGCTAAT-ACTATACATTA-CGGCG-TTTTCCTTAAACGCCACTAATTAC-AATA-TACATC
* * * * * *
3943951 AAGACCAAACTCTGCGTTTTGGTTAAGATAT-TTG-GAGGCGCTTACCACAAAA
61 AAGACCAAAATCTGCGTTTTGATTAACATATCTTGCGA--CGCTTA-CGCTAAG
* * * * * *
3944003 CGCTGCT-ATAACTATCCTTTACTGGCATTTTCCTTAAACGCCACTAATTATAGTATACATCAAG
1 CGCCGCTAAT-ACTATACATTAC-GGCGTTTTCCTTAAACGCCACTAATTACAATATACATCAAG
* * * * **
3944067 ACCAAAATGGTGCGTTTTGATTAAGATATCTTGCGGCGTTTAACGCTCTG
64 ACCAAAAT-CTGCGTTTTGATTAACATATCTTGCGACGCTT-ACGCTAAG
* *
3944117 CGCCGCTAATACTATACATTAGCGGCGTTTTCTTTATAAGCGCCACTAATTGCAATATACATCAA
1 CGCCGCTAATACTATACATTA-CGGCGTTTTCCTTA-AA-CGCCACTAATTACAATATACATCAA
* * * * * *
3944182 GACTAAACTCTGCGTTTTGGTTAACATCTTTTGCGACGCTTCCGCTAAG
63 GACCAAAATCTGCGTTTTGATTAACATATCTTGCGACGCTTACGCTAAG
* * * **
3944231 CGCCGCTAATACTATACATTACCGGCGTTTGTTCATAAGCGCCACTAATGCCAATATACATCAAG
1 CGCCGCTAATACTATACATTA-CGGCGTTT-TCCTTAAACGCCACTAATTACAATATACATCAAG
3944296 ACCA
64 ACCA
3944300 GAACGCTGCG
Statistics
Matches: 236, Mismatches: 48, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
112 1 0.00
113 66 0.28
114 102 0.43
115 37 0.16
116 30 0.13
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (111 bp):
CGCCGCTAATACTATACATTACGGCGTTTTCCTTAAACGCCACTAATTACAATATACATCAAGAC
CAAAATCTGCGTTTTGATTAACATATCTTGCGACGCTTACGCTAAG
Found at i:3944310 original size:114 final size:113
Alignment explanation
Indices: 3943777--3944335 Score: 461
Period size: 113 Copynumber: 4.9 Consensus size: 113
3943767 CGGTAAAAGT
* * ** *
3943777 GCCGCTAATACTATGC-TTCAGCGGCGTTGTCTCATGTGCGCCACTAATTCCAGTATACATCAAG
1 GCCGCTAATACTATACATT-AGCGGCGTT-TTTCATAAGCGCCACTAATTCCAATATACATCAAG
* * * * * *
3943841 AACTAACGCTGTGTTCTGGTTAAGATACTTTGCGGCG-TGTTACAC-AAAC
64 ACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCT-TAACACTAAAC
* * *
3943890 GCCGCTAATGA-TATACTTTAGCGGCGTTTTTCATCAAGCGCCACTAATTCTAATACT-CCTCAA
1 GCCGCTAAT-ACTATACATTAGCGGCGTTTTTCAT-AAGCGCCACTAATTCCAATA-TACATCAA
* * * * *
3943953 GACCAAACTCTGCGTTTTGGTTAAGATATTTGGAGGCGCTTACCACAAAAC
63 GACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTAACACTAAAC
* * * * * * * ** *
3944004 GCTGCT-ATAACTATCCTTTA-CTGGCATTTTCCTTAAACGCCACTAATTATAGTATACATCAAG
1 GCCGCTAAT-ACTATACATTAGC-GGCGTTTTTCATAAGCGCCACTAATTCCAATATACATCAAG
* * * * * * ***
3944067 ACCAAAATGGTGCGTTTTGATTAAGATATCTTGCGGCGTTTAACGCTCTGC
64 ACC-AAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTAACACTAAAC
* *
3944118 GCCGCTAATACTATACATTAGCGGCGTTTTCTTTATAAGCGCCACTAATTGCAATATACATCAAG
1 GCCGCTAATACTATACATTAGCGGCG-TTT-TTCATAAGCGCCACTAATTCCAATATACATCAAG
* * * * * * * *
3944183 ACTAAACTCTGCGTTTTGGTTAACATCTTTTGCGACGCTT-CCGCTAAGC
64 ACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTAACACTAAAC
* *
3944232 GCCGCTAATACTATACATTACCGGCGTTTGTTCATAAGCGCCACTAATGCCAATATACATCAAGA
1 GCCGCTAATACTATACATTAGCGGCGTTT-TTCATAAGCGCCACTAATTCCAATATACATCAAGA
* *
3944297 CCAGAACGCTGCGTGTTGGTCT-TGATATTTTGCGGCGCT
65 CCA-AACGCTGCGTTTTGGT-TAAGATATTTTGCGGCGCT
3944336 GCGTGGTAAA
Statistics
Matches: 353, Mismatches: 77, Indels: 31
0.77 0.17 0.07
Matches are distributed among these distances:
112 6 0.02
113 144 0.41
114 139 0.39
115 35 0.10
116 29 0.08
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (113 bp):
GCCGCTAATACTATACATTAGCGGCGTTTTTCATAAGCGCCACTAATTCCAATATACATCAAGAC
CAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTAACACTAAAC
Found at i:3944333 original size:229 final size:228
Alignment explanation
Indices: 3943889--3944314 Score: 495
Period size: 229 Copynumber: 1.9 Consensus size: 228
3943879 GTTACACAAA
* *
3943889 CGCCGCTAATGATATACTTTAGCGGCGTTTTTCATCAAGCGCCACTAATTCTAATACTCCTCAAG
1 CGCCGCTAATGATATACATTAGCGGCGTTTTTCATCAAGCGCCACTAATTCTAATACTCATCAAG
* * * *
3943954 ACCAAACTCTGCGTTTTGGTTAAGATATTTGGAGGCGCTTACCACAAAACGCTGCTATAACTATC
66 ACCAAACTCTGCGTTTTGGTTAACATATTTGGAGACGCTTACCACAAAACGCCGCTATAACTATA
* * * * * * * * *
3944019 CTTTACTGGCATTTTCCTTAAACGCCACTAATTATAGTATACATCAAGACCAAAATGGTGCGTTT
131 CATTACCGGCATTTTCCATAAACGCCACTAATGACAATATACATCAAGACCAAAACGCTGCGTGT
3944084 TGATTAAGATATCTTGCGGCGTTTAACGCTCTG
196 TGATTAAGATATCTTGCGGCGTTTAACGCTCTG
*
3944117 CGCCGCTAAT-ACTATACATTAGCGGCGTTTTCTTTAT-AAGCGCCACTAATTGC-AATA-TACA
1 CGCCGCTAATGA-TATACATTAGCGGCG-TTT-TTCATCAAGCGCCACTAATT-CTAATACT-CA
* * * * * * *
3944178 TCAAGACTAAACTCTGCGTTTTGGTTAACATCTTTTGCGACGCTT-CCGCTAAGCGCCGCTA-AT
61 TCAAGACCAAACTCTGCGTTTTGGTTAACATATTTGGAGACGCTTACCACAAAACGCCGCTATA-
* * * * *
3944241 ACTATACATTACCGGCGTTTGTTCATAAGCGCCACTAATGCCAATATACATCAAGACCAGAACGC
125 ACTATACATTACCGGCATTT-TCCATAAACGCCACTAATGACAATATACATCAAGACCAAAACGC
3944306 TGCGTGTTG
189 TGCGTGTTG
3944315 GTCTTGATAT
Statistics
Matches: 163, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
227 2 0.01
228 53 0.33
229 103 0.63
230 5 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (228 bp):
CGCCGCTAATGATATACATTAGCGGCGTTTTTCATCAAGCGCCACTAATTCTAATACTCATCAAG
ACCAAACTCTGCGTTTTGGTTAACATATTTGGAGACGCTTACCACAAAACGCCGCTATAACTATA
CATTACCGGCATTTTCCATAAACGCCACTAATGACAATATACATCAAGACCAAAACGCTGCGTGT
TGATTAAGATATCTTGCGGCGTTTAACGCTCTG
Found at i:3961447 original size:20 final size:20
Alignment explanation
Indices: 3961424--3961465 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
3961414 CATTCTTTAC
3961424 ATCACAAGA-GCAATAGAAAA
1 ATCA-AAGATGCAATAGAAAA
* *
3961444 ATCAAAGATTCAATCGAAAA
1 ATCAAAGATGCAATAGAAAA
3961464 AT
1 AT
3961466 AAAAAGGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.57, C:0.14, G:0.12, T:0.17
Consensus pattern (20 bp):
ATCAAAGATGCAATAGAAAA
Found at i:3974176 original size:1 final size:1
Alignment explanation
Indices: 3974170--3974196 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
3974160 GATGTTTTCG
3974170 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
3974197 GCTTGGTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:3975581 original size:13 final size:14
Alignment explanation
Indices: 3975552--3975584 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
3975542 TTCGAGGTTT
3975552 AAGGTTTAAAGTTC
1 AAGGTTTAAAGTTC
*
3975566 AAGGTTTAGA-TTC
1 AAGGTTTAAAGTTC
3975579 AAGGTT
1 AAGGTT
3975585 CAAGTTTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (14 bp):
AAGGTTTAAAGTTC
Found at i:3975588 original size:7 final size:7
Alignment explanation
Indices: 3975519--3975588 Score: 61
Period size: 7 Copynumber: 10.1 Consensus size: 7
3975509 TTGGATTTGG
3975519 GGTTCAA
1 GGTTCAA
*
3975526 GGTTCGA
1 GGTTCAA
*
3975533 GGTTCGA
1 GGTTCAA
*
3975540 GGTTCGA
1 GGTTCAA
*
3975547 GGTTTAA
1 GGTTCAA
*
3975554 GGTTTAA
1 GGTTCAA
*
3975561 AGTTCAA
1 GGTTCAA
*
3975568 GGTT-TA
1 GGTTCAA
*
3975574 GATTCAA
1 GGTTCAA
3975581 GGTTCAA
1 GGTTCAA
3975588 G
1 G
3975589 TTTGAGTATG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
6 4 0.08
7 48 0.92
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (7 bp):
GGTTCAA
Found at i:3976076 original size:17 final size:18
Alignment explanation
Indices: 3976054--3976089 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
3976044 TTTAATTATA
*
3976054 AAATAATGAAA-TTAATT
1 AAATAATAAAATTTAATT
3976071 AAATAATAAAATTTAATT
1 AAATAATAAAATTTAATT
3976089 A
1 A
3976090 CATATTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
AAATAATAAAATTTAATT
Found at i:3977220 original size:10 final size:10
Alignment explanation
Indices: 3977205--3977249 Score: 56
Period size: 10 Copynumber: 4.3 Consensus size: 10
3977195 GATGTAAATA
3977205 AAAAATTATT
1 AAAAATTATT
3977215 AAAAATTATT
1 AAAAATTATT
3977225 ATAAAATTA-T
1 A-AAAATTATT
3977235 AAAATATTATAT
1 AAAA-ATTAT-T
3977247 AAA
1 AAA
3977250 CTTATAACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
9 3 0.10
10 17 0.55
11 7 0.23
12 4 0.13
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAAATTATT
Found at i:3977247 original size:20 final size:20
Alignment explanation
Indices: 3977206--3977286 Score: 74
Period size: 20 Copynumber: 3.9 Consensus size: 20
3977196 ATGTAAATAA
3977206 AAAATTATTAAAAATTATTAT
1 AAAATTA-TAAAAATTATTAT
3977227 AAAATTATAAAATATTA-TAT
1 AAAATTATAAAA-ATTATTAT
* ** *
3977247 AAACTTATAACAAATTGTAGAAA
1 AAAATTATAA-AAA-T-TATTAT
3977270 AAAATTATAAAAATTAT
1 AAAATTATAAAAATTAT
3977287 AATTAGGCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
20 20 0.40
21 15 0.30
22 5 0.10
23 10 0.20
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATTATAAAAATTATTAT
Found at i:3979357 original size:27 final size:26
Alignment explanation
Indices: 3979299--3979356 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
3979289 ATATATCTTC
*
3979299 TCAAAATTTTACCAGGGGAAAAATCG
1 TCAAAATTTTACCAAGGGAAAAATCG
* *
3979325 TCAAAATTTTACCAAGGGTAAAATTG
1 TCAAAATTTTACCAAGGGAAAAATCG
3979351 TCAAAA
1 TCAAAA
3979357 AATTGTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.26
Consensus pattern (26 bp):
TCAAAATTTTACCAAGGGAAAAATCG
Found at i:3983140 original size:31 final size:34
Alignment explanation
Indices: 3983091--3983167 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 34
3983081 AATATTTAAT
*
3983091 TTAATTTAATGCTGATCTTAATAG-T-AT-TT-TA
1 TTAATTTAATACTGATCTT-ATAGATAATATTCTA
* *
3983122 TTAATTTAATATTTATCTTATAGATAAATATTCTA
1 TTAATTTAATACTGATCTTATAGAT-AATATTCTA
3983157 TTAATTTAATA
1 TTAATTTAATA
3983168 GATTTAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
30 4 0.11
31 17 0.45
33 2 0.05
34 2 0.05
35 13 0.34
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (34 bp):
TTAATTTAATACTGATCTTATAGATAATATTCTA
Found at i:3983186 original size:12 final size:12
Alignment explanation
Indices: 3983169--3983193 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3983159 AATTTAATAG
3983169 ATTTAATATTAA
1 ATTTAATATTAA
3983181 ATTTAATATTAA
1 ATTTAATATTAA
3983193 A
1 A
3983194 GTGATTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:3985519 original size:23 final size:24
Alignment explanation
Indices: 3985487--3985531 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
3985477 AACTAAGCTC
3985487 ACTTACTTTTCTAGCTT-ATTTCAT
1 ACTTACTTTTCTA-CTTAATTTCAT
3985511 ACTT-CTTTTCTACTTAATTTC
1 ACTTACTTTTCTACTTAATTTC
3985532 TTGCCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 3 0.15
23 13 0.65
24 4 0.20
ACGTcount: A:0.20, C:0.22, G:0.02, T:0.56
Consensus pattern (24 bp):
ACTTACTTTTCTACTTAATTTCAT
Found at i:3985912 original size:30 final size:28
Alignment explanation
Indices: 3985854--3985913 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
3985844 AATCCCAATT
* *
3985854 TTCCCCTTTTCTTTTCTTTCTCTTTTTC
1 TTCCCCTTTTCTTTTCATTCTCTGTTTC
*
3985882 TTCCCCTGTTTTTGTTTCATTCTCTGTTTC
1 TTCCCCT-TTTCT-TTTCATTCTCTGTTTC
3985912 TT
1 TT
3985914 TTCTGTTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 7 0.26
29 4 0.15
30 16 0.59
ACGTcount: A:0.02, C:0.28, G:0.05, T:0.65
Consensus pattern (28 bp):
TTCCCCTTTTCTTTTCATTCTCTGTTTC
Found at i:3985915 original size:22 final size:21
Alignment explanation
Indices: 3985890--3985938 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
3985880 TCTTCCCCTG
3985890 TTTTTGTTTCATTC-TCTGTTTC
1 TTTTTG-TTC-TTCTTCTGTTTC
*
3985912 TTTTCTGTTCTTCTTTTGTTTC
1 TTTT-TGTTCTTCTTCTGTTTC
3985934 TTTTT
1 TTTTT
3985939 CTTTTNNNNN
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.17
22 18 0.75
23 2 0.08
ACGTcount: A:0.02, C:0.16, G:0.08, T:0.73
Consensus pattern (21 bp):
TTTTTGTTCTTCTTCTGTTTC
Found at i:3986036 original size:5 final size:5
Alignment explanation
Indices: 3986023--3986096 Score: 55
Period size: 5 Copynumber: 15.2 Consensus size: 5
3986013 NNNNNNNNNN
* * * * * *
3986023 AATAC AATAT AATAC AATAC AATAT AATAT TATAT AATAT ATTAT ATTA-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
*
3986072 AATAAT AAAAT AATAT -AT-T AATAT A
1 AAT-AT AATAT AATAT AATAT AATAT A
3986097 TTTAAAACAT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
3 1 0.02
4 6 0.11
5 47 0.84
6 2 0.04
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:3986069 original size:17 final size:17
Alignment explanation
Indices: 3986044--3986078 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
3986034 ATACAATACA
*
3986044 ATATAATATTATATAAT
1 ATATAATATTAAATAAT
*
3986061 ATATTATATTAAATAAT
1 ATATAATATTAAATAAT
3986078 A
1 A
3986079 AAATAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATATTAAATAAT
Found at i:3991819 original size:28 final size:28
Alignment explanation
Indices: 3991787--3991856 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
3991777 ATGAGATTGG
*
3991787 CACTAAGTGTGCGAGTTTAATTGTAAAA
1 CACTAAGTGTGCGAGTTTAATTATAAAA
* * *
3991815 CACTAAGTGTGCGAGTTTGATTATTAAC
1 CACTAAGTGTGCGAGTTTAATTATAAAA
3991843 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
3991857 ACTTATTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTATAAAA
Found at i:3995758 original size:28 final size:28
Alignment explanation
Indices: 3995723--3995803 Score: 144
Period size: 28 Copynumber: 2.9 Consensus size: 28
3995713 TTACAACAAT
*
3995723 AACAACACATATAAAGTAGTTGAAATAA
1 AACAACACATATAAAATAGTTGAAATAA
3995751 AACAACACATATAAAATAGTTGAAATAA
1 AACAACACATATAAAATAGTTGAAATAA
*
3995779 AACAACATATATAAAATAGTTGAAA
1 AACAACACATATAAAATAGTTGAAA
3995804 AGTTATGTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.59, C:0.10, G:0.09, T:0.22
Consensus pattern (28 bp):
AACAACACATATAAAATAGTTGAAATAA
Found at i:3995892 original size:17 final size:17
Alignment explanation
Indices: 3995870--3995929 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
3995860 ATATATTTTA
3995870 AAATTATTAAGTTATGT
1 AAATTATTAAGTTATGT
* *
3995887 AAATTATGTGAGTTGT-T
1 AAATTAT-TAAGTTATGT
*
3995904 AAGTTATTAAGTTATGT
1 AAATTATTAAGTTATGT
*
3995921 AAGTTATTA
1 AAATTATTA
3995930 TGTGAATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 6 0.17
17 24 0.67
18 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (17 bp):
AAATTATTAAGTTATGT
Found at i:3995915 original size:34 final size:36
Alignment explanation
Indices: 3995873--3995956 Score: 118
Period size: 34 Copynumber: 2.3 Consensus size: 36
3995863 TATTTTAAAA
* *
3995873 TTATTAAGTTATGTAA-ATTATGTGAGTTGT-TAAG
1 TTATTAAGTTATGTAATATTATGTGAATTATATAAG
3995907 TTATTAAGTTATGTAAGTTATTATGTGAATTATATAAG
1 TTATTAAGTTATGTAA--TATTATGTGAATTATATAAG
3995945 TTATTAAGTTAT
1 TTATTAAGTTAT
3995957 ATGGTATGAC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 16 0.36
37 12 0.27
38 16 0.36
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.49
Consensus pattern (36 bp):
TTATTAAGTTATGTAATATTATGTGAATTATATAAG
Found at i:3995925 original size:9 final size:8
Alignment explanation
Indices: 3995873--3995929 Score: 60
Period size: 9 Copynumber: 6.8 Consensus size: 8
3995863 TATTTTAAAA
3995873 TTATTAAG
1 TTATTAAG
*
3995881 TTATGTAAA
1 TTAT-TAAG
*
3995890 TTATGTGAG
1 TTAT-TAAG
*
3995899 TTGTTAAG
1 TTATTAAG
3995907 TTATTAAG
1 TTATTAAG
3995915 TTATGTAAG
1 TTAT-TAAG
3995924 TTATTA
1 TTATTA
3995930 TGTGAATTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 20 0.49
9 21 0.51
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (8 bp):
TTATTAAG
Found at i:3995958 original size:17 final size:17
Alignment explanation
Indices: 3995873--3995958 Score: 66
Period size: 17 Copynumber: 4.8 Consensus size: 17
3995863 TATTTTAAAA
* *
3995873 TTATTAAGTTATGTAAA
1 TTATTAAGTTATATAAG
* *
3995890 TTATGTGAGTTGT-TAAG
1 TTAT-TAAGTTATATAAG
*
3995907 TTATTAAGTTATGTAAG
1 TTATTAAGTTATATAAG
*
3995924 TTATTATGTGAATTATATAAG
1 TTATTA----AGTTATATAAG
3995945 TTATTAAGTTATAT
1 TTATTAAGTTATAT
3995959 GGTATGACAT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
16 6 0.11
17 28 0.51
18 6 0.11
21 15 0.27
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TTATTAAGTTATATAAG
Found at i:3995983 original size:53 final size:53
Alignment explanation
Indices: 3995925--3996195 Score: 230
Period size: 53 Copynumber: 5.6 Consensus size: 53
3995915 TTATGTAAGT
*
3995925 TATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
1 TATTATGTAAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
* * * * *
3995978 TATTATGTAAATTATGTGAGTTGTTAAG---T-T-GT-T---ATGTA-A-GT-
1 TATTATGTAAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
*
3996019 TATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
1 TATTATGTAAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
* * * * *
3996072 TATTATGTAAATTATGTGAGTTGTTAAG---T-T-GT-T---ATGTA-A-GT-
1 TATTATGTAAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
*
3996113 TATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
1 TATTATGTAAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
* * *
3996166 TATTATGTAAATTATGTGAGTTGTTAAGTT
1 TATTATGTAAATTATATAAGTTATTAAGTT
3996196 GTTAAGAGCA
Statistics
Matches: 166, Mismatches: 28, Indels: 48
0.69 0.12 0.20
Matches are distributed among these distances:
41 48 0.29
42 2 0.01
43 2 0.01
44 10 0.06
45 2 0.01
46 4 0.02
47 4 0.02
48 4 0.02
49 2 0.01
50 10 0.06
51 2 0.01
52 2 0.01
53 74 0.45
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (53 bp):
TATTATGTAAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATG
Found at i:3996012 original size:29 final size:30
Alignment explanation
Indices: 3995905--3996195 Score: 109
Period size: 33 Copynumber: 9.4 Consensus size: 30
3995895 TGAGTTGTTA
* *
3995905 AGTTAT-TAAGTTATGTAAGT-TATTATGTG
1 AGTTATATAAGTTAT-TATGTAAATTATGTG
* * * **
3995934 AATTATATAAGTTATTAAGTTATATGGTATGAC
1 AGTTATATAAGTTATTATG-TAAAT--TATGTG
*
3995967 A-TATATATATG-TATTATGTAAATTATGTG
1 AGT-TATATAAGTTATTATGTAAATTATGTG
* *
3995996 AGTTGT-TAAGTTGTTATGTAAGTTATTATGTG
1 AGTTATATAAGTTATTATGTAA---ATTATGTG
* * * **
3996028 AATTATATAAGTTATTAAGTTATATGGTATGAC
1 AGTTATATAAGTTATTATG-TAAAT--TATGTG
*
3996061 A-TATATATATG-TATTATGTAAATTATGTG
1 AGT-TATATAAGTTATTATGTAAATTATGTG
* *
3996090 AGTTGT-TAAGTTGTTATGTAAGTTATTATGTG
1 AGTTATATAAGTTATTATGTAA---ATTATGTG
* * * **
3996122 AATTATATAAGTTATTAAGTTATATGGTATGAC
1 AGTTATATAAGTTATTATG-TAAAT--TATGTG
*
3996155 A-TATATATATG-TATTATGTAAATTATGTG
1 AGT-TATATAAGTTATTATGTAAATTATGTG
*
3996184 AGTTGT-TAAGTT
1 AGTTATATAAGTT
3996196 GTTAAGAGCA
Statistics
Matches: 194, Mismatches: 40, Indels: 56
0.67 0.14 0.19
Matches are distributed among these distances:
28 9 0.05
29 49 0.25
30 12 0.06
31 19 0.10
32 45 0.23
33 56 0.29
34 4 0.02
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (30 bp):
AGTTATATAAGTTATTATGTAAATTATGTG
Found at i:3996023 original size:41 final size:41
Alignment explanation
Indices: 3995978--3996142 Score: 132
Period size: 41 Copynumber: 3.7 Consensus size: 41
3995968 TATATATATG
* * *
3995978 TATTATGTAAATTATGTGAGTTGTTAAGTTGTTATGTAAGT
1 TATTATGTAAATTATATAAGTTATTAAGTTGTTATGTAAGT
* * *
3996019 TATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATAT
1 TATTATGTAAATTATATAAGTTATTAAG---T-T-GT-T---ATGTA-A-GT
* * *
3996071 GTATTATGTAAATTATGTGAGTTGTTAAGTTGTTATGTAAGT
1 -TATTATGTAAATTATATAAGTTATTAAGTTGTTATGTAAGT
*
3996113 TATTATGTGAATTATATAAGTTATTAAGTT
1 TATTATGTAAATTATATAAGTTATTAAGTT
3996143 ATATGGTATG
Statistics
Matches: 96, Mismatches: 16, Indels: 24
0.71 0.12 0.18
Matches are distributed among these distances:
41 50 0.52
42 1 0.01
43 1 0.01
44 5 0.05
45 1 0.01
46 2 0.02
47 2 0.02
48 2 0.02
49 1 0.01
50 5 0.05
51 1 0.01
52 1 0.01
53 24 0.25
ACGTcount: A:0.33, C:0.01, G:0.18, T:0.48
Consensus pattern (41 bp):
TATTATGTAAATTATATAAGTTATTAAGTTGTTATGTAAGT
Found at i:3996047 original size:94 final size:94
Alignment explanation
Indices: 3995914--3996199 Score: 572
Period size: 94 Copynumber: 3.0 Consensus size: 94
3995904 AAGTTATTAA
3995914 GTTATGTAAGTTATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATGT
1 GTTATGTAAGTTATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATGT
3995979 ATTATGTAAATTATGTGAGTTGTTAAGTT
66 ATTATGTAAATTATGTGAGTTGTTAAGTT
3996008 GTTATGTAAGTTATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATGT
1 GTTATGTAAGTTATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATGT
3996073 ATTATGTAAATTATGTGAGTTGTTAAGTT
66 ATTATGTAAATTATGTGAGTTGTTAAGTT
3996102 GTTATGTAAGTTATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATGT
1 GTTATGTAAGTTATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATGT
3996167 ATTATGTAAATTATGTGAGTTGTTAAGTT
66 ATTATGTAAATTATGTGAGTTGTTAAGTT
3996196 GTTA
1 GTTA
3996200 AGAGCAACTA
Statistics
Matches: 192, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 192 1.00
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (94 bp):
GTTATGTAAGTTATTATGTGAATTATATAAGTTATTAAGTTATATGGTATGACATATATATATGT
ATTATGTAAATTATGTGAGTTGTTAAGTT
Found at i:3998614 original size:47 final size:48
Alignment explanation
Indices: 3998547--3998645 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 48
3998537 CATAGTTTTG
* * **
3998547 TTTAGGTAATATTTATAAAAATTAGATAAAATTATCAATTTTAGT-TT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
* *
3998594 TTTAAGTAGTATTTATAAAAATTAGGTAAAAATAAAAATTTTAGTGTT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
3998642 TTTA
1 TTTA
3998646 TTTCTTTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
47 39 0.87
48 6 0.13
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.45
Consensus pattern (48 bp):
TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
Found at i:3998676 original size:20 final size:21
Alignment explanation
Indices: 3998651--3998717 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 21
3998641 TTTTATTTCT
3998651 TTTTAATTTTT-TAATTTTAA
1 TTTTAATTTTTATAATTTTAA
3998671 TTTTAATTTTTATAATTTTTACAA
1 TTTTAATTTTTATAA-TTTT--AA
*
3998695 TTTTACAATTTTTACAATTTTAA
1 TTTT--AATTTTTATAATTTTAA
3998718 ATTATTATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
20 11 0.28
21 3 0.08
22 4 0.10
23 2 0.05
24 6 0.15
25 4 0.10
26 10 0.25
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTAATTTTTATAATTTTAA
Found at i:3998691 original size:9 final size:9
Alignment explanation
Indices: 3998675--3998715 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
3998665 TTTTAATTTT
*
3998675 AATTTTTAT
1 AATTTTTAC
3998684 AATTTTTAC
1 AATTTTTAC
3998693 AA-TTTTAC
1 AATTTTTAC
3998701 AATTTTTAC
1 AATTTTTAC
3998710 AATTTT
1 AATTTT
3998716 AAATTATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 8 0.27
9 22 0.73
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (9 bp):
AATTTTTAC
Found at i:3998698 original size:8 final size:8
Alignment explanation
Indices: 3998669--3998720 Score: 54
Period size: 9 Copynumber: 6.5 Consensus size: 8
3998659 TTTTAATTTT
3998669 AATTTTA-
1 AATTTTAC
* *
3998676 ATTTTTAT
1 AATTTTAC
3998684 AATTTTTAC
1 AA-TTTTAC
3998693 AATTTTAC
1 AATTTTAC
3998701 AATTTTTAC
1 AA-TTTTAC
3998710 AATTTTA-
1 AATTTTAC
3998717 AATT
1 AATT
3998721 ATTATATTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
7 10 0.26
8 14 0.36
9 15 0.38
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (8 bp):
AATTTTAC
Found at i:3998704 original size:17 final size:16
Alignment explanation
Indices: 3998650--3998720 Score: 69
Period size: 17 Copynumber: 4.6 Consensus size: 16
3998640 TTTTTATTTC
* *
3998650 TTTTTAATTTTT-TAA
1 TTTTAAATTTTTACAA
*
3998665 TTTT-AA-TTTTA-AT
1 TTTTAAATTTTTACAA
3998678 TTTTATAATTTTTACAA
1 TTTTA-AATTTTTACAA
3998695 TTTTACAATTTTTACAA
1 TTTTA-AATTTTTACAA
3998712 TTTTAAATT
1 TTTTAAATT
3998721 ATTATATTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
13 9 0.19
14 2 0.04
15 6 0.12
16 9 0.19
17 22 0.46
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTTAAATTTTTACAA
Found at i:3998734 original size:21 final size:20
Alignment explanation
Indices: 3998709--3998763 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 20
3998699 ACAATTTTTA
3998709 CAATTTTAAATTATT-ATATT
1 CAATTTTAAATTATTCATA-T
*
3998729 CAAATTATTATA-TATTCCATAT
1 C-AATT-TTAAATTATT-CATAT
3998751 CAATTTTAAATTA
1 CAATTTTAAATTA
3998764 ATAATCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
20 5 0.18
21 14 0.50
22 6 0.21
23 3 0.11
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (20 bp):
CAATTTTAAATTATTCATAT
Found at i:3999069 original size:96 final size:97
Alignment explanation
Indices: 3998960--3999188 Score: 278
Period size: 96 Copynumber: 2.5 Consensus size: 97
3998950 AAGAACTTAA
* * *
3998960 TTAATATATAAATTAAAAAATATTAATTAATCTAAATCTTAAACCCT-AACCCGACCCCAAATCC
1 TTAATATATAAATTAAAAAACATTAATTAATCTAAACCCTAAACCCTAAACCCGACCCCAAATCC
3999024 CTAACCCATAACCCCTAACCCCTAAACTTTAT
66 CTAACCCATAACCCCTAACCCCTAAACTTTAT
* * * * *
3999056 TTAATATATAAATTAAAAAACATTAATTAATCTAACCCCTAAACCTTAAATCTGACCCTAAA---
1 TTAATATATAAATTAAAAAACATTAATTAATCTAAACCCTAAACCCTAAACCCGACCCCAAATCC
* *
3999118 -T--CCC-TAACCCCTAACCCCAAAACCTTAT
66 CTAACCCATAACCCCTAACCCCTAAACTTTAT
** *
3999146 TTAATATAT-AATTAAAATGCACTAATTAATCTAAACCCTAAAC
1 TTAATATATAAATTAAAAAACATTAATTAATCTAAACCCTAAAC
3999189 TAACACCGAA
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
89 30 0.25
90 31 0.26
91 3 0.03
93 1 0.01
96 42 0.36
97 11 0.09
ACGTcount: A:0.44, C:0.26, G:0.01, T:0.29
Consensus pattern (97 bp):
TTAATATATAAATTAAAAAACATTAATTAATCTAAACCCTAAACCCTAAACCCGACCCCAAATCC
CTAACCCATAACCCCTAACCCCTAAACTTTAT
Found at i:3999287 original size:14 final size:15
Alignment explanation
Indices: 3999268--3999300 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
3999258 CTTAAACCAG
3999268 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
3999282 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
3999297 AATC
1 AATC
3999301 TATAAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:4001467 original size:115 final size:114
Alignment explanation
Indices: 4001093--4001532 Score: 675
Period size: 114 Copynumber: 3.9 Consensus size: 114
4001083 AAATTATTTT
* * * *
4001093 AAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAAGAAAACGA
1 AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGA
* * * **
4001158 CGTCGTTGGGCTTAGGT-TTTTTCTCGGCGCTTTCTCAAAAACGATTTTA
66 CGTCGTTGGGCTTAGGTATTTTT-GCGGCGCTTTCCCAAAAACGCTGCTA
* * * *
4001207 AAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCTGAAAGCTCAAAAAACGG
1 AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGA
* *
4001272 TGTCGTTGGGCTTAGGTATTTTTGCGGTGCTTTCCCAAAAACGCTGCTA
66 CGTCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCTGCTA
* *
4001321 AAGCACTGAGCATTAGCTGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGG
1 AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGA
* *
4001386 CATCGTTGGGCTTAGGTAATTTTTGCGGCGCTTTCCCAAAAGCGCTGCTA
66 CGTCGTTGGGCTTAGGT-ATTTTTGCGGCGCTTTCCCAAAAACGCTGCTA
4001436 AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGA
1 AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGA
*
4001501 CGTCGTGGGGCTTAGGTATTTTTGCGGCGCTT
66 CGTCGTTGGGCTTAGGTATTTTTGCGGCGCTT
4001533 ACTTAAAAAC
Statistics
Matches: 299, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
114 186 0.62
115 113 0.38
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (114 bp):
AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGA
CGTCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCTGCTA
Found at i:4001514 original size:229 final size:228
Alignment explanation
Indices: 4001093--4001532 Score: 675
Period size: 229 Copynumber: 1.9 Consensus size: 228
4001083 AAATTATTTT
* * *
4001093 AAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAAGAAAACGA
1 AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTAAGAAAACGA
* * * ** *
4001158 CGTCGTTGGGCTTAGGTTTTTTCTCGGCGCTTTCTCAAAAACGATTTTAAAGCCCTGAGCATTAG
66 CATCGTTGGGCTTAGGTTTTTTCGCGGCGCTTTCCCAAAAACGATGCTAAAGCACTGAGCATTAG
* ** *
4001223 CGGCGCTTACTTAAAAACGCCACTAAATCCCTGAAAGCTCAAAAAACGGTGTCGTTGGGCTTAGG
131 CGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGACGTCGTGGGGCTTAGG
*
4001288 TATTTTTGCGGTGCTTTCCCAAAAACGCTGCTA
196 TATTTTTGCGGCGCTTTCCCAAAAACGCTGCTA
* * *
4001321 AAGCACTGAGCATTAGCTGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGG
1 AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTAAGAAAACGA
* *
4001386 CATCGTTGGGCTTAGGTAATTTTT-GCGGCGCTTTCCCAAAAGCGCTGCTAAAGCACTGAGCATT
66 CATCGTTGGGCTTAGGT--TTTTTCGCGGCGCTTTCCCAAAAACGATGCTAAAGCACTGAGCATT
*
4001450 AGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTA
129 AGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGACGTCGTGGGGCTTA
4001515 GGTATTTTTGCGGCGCTT
194 GGTATTTTTGCGGCGCTT
4001533 ACTTAAAAAC
Statistics
Matches: 190, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
228 75 0.39
229 110 0.58
230 5 0.03
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (228 bp):
AAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTAAGAAAACGA
CATCGTTGGGCTTAGGTTTTTTCGCGGCGCTTTCCCAAAAACGATGCTAAAGCACTGAGCATTAG
CGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGACGTCGTGGGGCTTAGG
TATTTTTGCGGCGCTTTCCCAAAAACGCTGCTA
Found at i:4001570 original size:73 final size:73
Alignment explanation
Indices: 4001451--4001624 Score: 258
Period size: 73 Copynumber: 2.4 Consensus size: 73
4001441 CTGAGCATTA
4001451 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
4001516 GTATTTTT
66 GTATTTTT
* ** ** *
4001524 GCGGCGCTTACTTAAAAACGCCACTAAATCGCCGAAAGCTCAGAAAACGGTGTTTTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
4001589 GTATTTTT
66 GTATTTTT
* ** *
4001597 GCGGCGCTTTCCCAAAAACGCCGCTAAA
1 GCGGCGCTTACTTAAAAACGCCACTAAA
4001625 GCCCTGAGCA
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 91 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (73 bp):
GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
GTATTTTT
Found at i:4001654 original size:302 final size:301
Alignment explanation
Indices: 4001222--4001833 Score: 983
Period size: 302 Copynumber: 2.0 Consensus size: 301
4001212 CTGAGCATTA
4001222 GCGGCGCTTACTTAAAAACGCCACTAAATCCCTGAAAGCTCAAAAAACGGTGTCGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCTGAAAGCTCAAAAAACGGTGTCGTTGGGCTTAG
* * *
4001287 GTATTTTTGCGGTGCTTTCCCAAAAACGCTGCTAAAGCACTGAGCATTAGCTGCGCTTACTTAAA
66 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCACTGAGCATTAGCGGCGCTTACTTAAA
4001352 AACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTAATTTTTGCGGCGC
131 AACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGT-ATTTTTGCGGCGC
* * *
4001417 TTTCCCAAAAGCGCTGCTAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCC
195 TTTCCCAAAAACGCCGCGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCC
*
4001482 CCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAGGTATTTTT
260 CCGAAAGCTCAGAAAACGACGTCATGGGGCTTAGGTATTTTT
* **
4001524 GCGGCGCTTACTTAAAAACGCCACTAAATCGCC-GAAAGCTCAGAAAACGGTGTTTTTGGGCTTA
1 GCGGCGCTTACTTAAAAACGCCACTAAATC-CCTGAAAGCTCAAAAAACGGTGTCGTTGGGCTTA
*
4001588 GGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAA
65 GGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCACTGAGCATTAGCGGCGCTTACTTAA
* * ** *
4001653 AAGCGGCACTAAATCCCCGAAAGCTCAGAAAACGGTGTTGTTGGGCTTAGGTATTTTTGCGGCGC
130 AAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTATTTTTGCGGCGC
* *
4001718 TTTCCCAAAAATGCCGCGAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCC
195 TTTCCCAAAAACGCCGCGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCC
** * ** *
4001783 CTTAAAGCTCAGAAAATGGTGTCATTGGGCTTAGGTATTTTT
260 CCGAAAGCTCAGAAAACGACGTCATGGGGCTTAGGTATTTTT
4001825 GCGGCGCTT
1 GCGGCGCTT
4001834 TCCCAAAAAT
Statistics
Matches: 285, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
301 117 0.41
302 166 0.58
303 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (301 bp):
GCGGCGCTTACTTAAAAACGCCACTAAATCCCTGAAAGCTCAAAAAACGGTGTCGTTGGGCTTAG
GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCACTGAGCATTAGCGGCGCTTACTTAAA
AACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTATTTTTGCGGCGCT
TTCCCAAAAACGCCGCGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCC
CGAAAGCTCAGAAAACGACGTCATGGGGCTTAGGTATTTTT
Found at i:4001665 original size:187 final size:188
Alignment explanation
Indices: 4001339--4001719 Score: 629
Period size: 187 Copynumber: 2.0 Consensus size: 188
4001329 AGCATTAGCT
4001339 GCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTA
1 GCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTA
* *
4001404 ATTTTTGCGGCGCTTTCCCAAAAGCGCTGCTAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAA
66 ATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAA
4001469 CGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAGGTATTTTTGCG
131 CGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAGGTATTTTTGCG
* ** **
4001527 GCGCTTACTTAAAAACGCCACTAAATCGCCGAAAGCTCAGAAAACGGTGTTTTTGGGCTTAGGT-
1 GCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTA
* *
4001591 ATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAG
66 ATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAA
* ** * *
4001656 CGGCACTAAATCCCCGAAAGCTCAGAAAACGGTGTTGTTGGGCTTAGGTATTTTTGCG
131 CGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAGGTATTTTTGCG
4001714 GCGCTT
1 GCGCTT
4001720 TCCCAAAAAT
Statistics
Matches: 179, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
187 120 0.67
188 59 0.33
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (188 bp):
GCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTA
ATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAA
CGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAGGTATTTTTGCG
Found at i:4001724 original size:114 final size:114
Alignment explanation
Indices: 4001524--4002053 Score: 830
Period size: 114 Copynumber: 4.6 Consensus size: 114
4001514 AGGTATTTTT
* **
4001524 GCGGCGCTTACTTAAAAACGCCACTAAATCGCCGAAAGCTCAGAAAACGGTGTTTTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
*
4001589 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
66 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCGAAAGCCCTGAGCATTA
* * **
4001638 GCGGCGCTTACTTAAAAGCGGCACTAAATCCCCGAAAGCTCAGAAAACGGTGTTGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
*
4001703 GTATTTTTGCGGCGCTTTCCCAAAAATGCCGCGAAAGCCCTGAGCATTA
66 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCGAAAGCCCTGAGCATTA
** *
4001752 GCGGCGCTTACTTAAAAACGCCACTAAATCCCTTAAAGCTCAGAAAATGGTGTCATTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
4001817 GTATTTTTGCGGCGCTTTCCCAAAAATGCCGCCGCGAAAG-CC-GAGCATTA
66 GTATTTTTGCGGCGCTTTCCCAAAAA---CGCCGCGAAAGCCCTGAGCATTA
** *
4001867 GCGGCGCTTACTTAAAAACGCCACTAAATCCCTTAAAGCTCAGAAAATGGTGTCATTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
** *
4001932 GTATTTTTTTGGCGCTTTCCCAAAAATGCCGCGAAAGCCCTGAGCATTA
66 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCGAAAGCCCTGAGCATTA
* *
4001981 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
*
4002046 GTTTTTTT
66 GTATTTTT
4002054 NNNNNNNNNN
Statistics
Matches: 388, Mismatches: 23, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
112 10 0.03
113 2 0.01
114 267 0.69
115 97 0.25
116 2 0.01
117 10 0.03
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (114 bp):
GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCGAAAGCCCTGAGCATTA
Found at i:4001879 original size:416 final size:416
Alignment explanation
Indices: 4001108--4001948 Score: 1240
Period size: 416 Copynumber: 2.0 Consensus size: 416
4001098 CTGAGCATTA
* *
4001108 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAAGAAAACGACGTCGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTAAGAAAACGACGTCGTTGGGCTTAG
* * ***
4001173 GTTTTTTCTCGGCGCTTTCTCAAAAACGATTTTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAA
66 GTTTTTTCGCGGCGCTTTCCCAAAAACGACGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAA
* *
4001238 AACGCCACTAAATCCCTGAAAGCTCAAAAAACGGTGTCGTTGGGCTTAGGTATTTTTGCGGTGCT
131 AACGCCACTAAATCCCCGAAAGCTCAAAAAACGGTGTCGTTGGGCTTAGGTATTTTTGCGGCGCT
* * *
4001303 TTCCCAAAAACGCTGCTAAAGCACTGAGCATTAGCTGCGCTTACTTAAAAACGCCACTAAATCCC
196 TTCCCAAAAACGCCGCGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCC
* *
4001368 CGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTAATTTTTGCGGCGCTTTCCCAAAAGCGCTG
261 CGAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTAATTTTTGCGGCGCTTTCCCAAAAGCGCCG
*
4001433 CTAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAA
326 CGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAA
*
4001498 CGACGTCGTGGGGCTTAGGTATTTTT
391 CGACGTCATGGGGCTTAGGTATTTTT
* * ** **
4001524 GCGGCGCTTACTTAAAAACGCCACTAAATCGCCGAAAGCTCAGAAAACGGTGTTTTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTAAGAAAACGACGTCGTTGGGCTTAG
*
4001589 GTATTTTT-GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAA
66 GT-TTTTTCGCGGCGCTTTCCCAAAAACGACGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAA
* * * *
4001653 AAGCGGCACTAAATCCCCGAAAGCTCAGAAAACGGTGTTGTTGGGCTTAGGTATTTTTGCGGCGC
130 AAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGTGTCGTTGGGCTTAGGTATTTTTGCGGCGC
* *
4001718 TTTCCCAAAAATGCCGCGAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCC
195 TTTCCCAAAAACGCCGCGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCC
** * **
4001783 CTTAAAGCTCAGAAAATGGTGTCATTGGGCTTAGGT-ATTTTTGCGGCGCTTTCCCAAAAATGCC
260 CCGAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTAATTTTTGCGGCGCTTTCCC-AAAA-G-C
**
4001847 GCCGCGAAAGC-C-GAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCTTAAAGCTCAG
322 GCCGCGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAG
* ** *
4001910 AAAATGGTGTCATTGGGCTTAGGTATTTTT
387 AAAACGACGTCATGGGGCTTAGGTATTTTT
**
4001940 TTGGCGCTT
1 GCGGCGCTT
4001949 TCCCAAAAAT
Statistics
Matches: 379, Mismatches: 42, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
415 19 0.05
416 343 0.91
417 7 0.02
418 10 0.03
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (416 bp):
GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTAAGAAAACGACGTCGTTGGGCTTAG
GTTTTTTCGCGGCGCTTTCCCAAAAACGACGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAA
AACGCCACTAAATCCCCGAAAGCTCAAAAAACGGTGTCGTTGGGCTTAGGTATTTTTGCGGCGCT
TTCCCAAAAACGCCGCGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCC
CGAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTAATTTTTGCGGCGCTTTCCCAAAAGCGCCG
CGAAAGCACTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAA
CGACGTCATGGGGCTTAGGTATTTTT
Found at i:4001953 original size:229 final size:227
Alignment explanation
Indices: 4001524--4002053 Score: 839
Period size: 229 Copynumber: 2.3 Consensus size: 227
4001514 AGGTATTTTT
**
4001524 GCGGCGCTTACTTAAAAACGCCACTAAATCGCCGAAAGCTCAGAAAACGGTGTTTTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATC-CCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
*
4001589 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAA
65 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCGAAAGCCCTGAGCATTAGCGGCGCTTACTTAAA
* * **
4001654 AGCGGCACTAAATCCCCGAAAGCTCAGAAAACGGTGTTGTTGGGCTTAGGTATTTTTGCGGCGCT
130 AACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAGGTATTTTTGCGGCGCT
4001719 TTCCCAAAAATGCCGCGAAAGCCCTGAGCATTA
195 TTCCCAAAAATGCCGCGAAAGCCCTGAGCATTA
* *
4001752 GCGGCGCTTACTTAAAAACGCCACTAAATCCCTTAAAGCTCAGAAAATGGTGTCATTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCC-GAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
4001817 GTATTTTTGCGGCGCTTTCCCAAAAATGCCGCCGCGAAAG-CC-GAGCATTAGCGGCGCTTACTT
65 GTATTTTTGCGGCGCTTTCCCAAAAA---CGCCGCGAAAGCCCTGAGCATTAGCGGCGCTTACTT
** * **
4001880 AAAAACGCCACTAAATCCCTTAAAGCTCAGAAAATGGTGTCATTGGGCTTAGGTATTTTTTTGGC
127 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAGGTATTTTTGCGGC
4001945 GCTTTCCCAAAAATGCCGCGAAAGCCCTGAGCATTA
192 GCTTTCCCAAAAATGCCGCGAAAGCCCTGAGCATTA
* *
4001981 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAAT-CCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAG
*
4002046 GTTTTTTT
65 GTATTTTT
4002054 NNNNNNNNNN
Statistics
Matches: 278, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
227 2 0.01
228 84 0.30
229 177 0.64
230 5 0.02
231 10 0.04
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (227 bp):
GCGGCGCTTACTTAAAAACGCCACTAAATCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAGG
TATTTTTGCGGCGCTTTCCCAAAAACGCCGCGAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAA
ACGCCACTAAATCCCCGAAAGCTCAGAAAACGGTGTCATTGGGCTTAGGTATTTTTGCGGCGCTT
TCCCAAAAATGCCGCGAAAGCCCTGAGCATTA
Found at i:4003758 original size:73 final size:73
Alignment explanation
Indices: 4003667--4003819 Score: 270
Period size: 73 Copynumber: 2.1 Consensus size: 73
4003657 CTGAGCATTA
4003667 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
4003732 GTATTTTT
66 GTATTTTT
* * *
4003740 GCGGCGCTTACTTAAAAACGCCACTAAATCGCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
*
4003805 GTTTTTTT
66 GTATTTTT
4003813 GCGGCGC
1 GCGGCGC
4003820 CTTCCCAAAA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (73 bp):
GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
GTATTTTT
Found at i:4003830 original size:73 final size:73
Alignment explanation
Indices: 4003667--4003840 Score: 251
Period size: 73 Copynumber: 2.4 Consensus size: 73
4003657 CTGAGCATTA
**
4003667 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
1 GCGGCGCTTACCCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
4003732 GTATTTTT
66 GTATTTTT
** * * *
4003740 GCGGCGCTTACTTAAAAACGCCACTAAATCGCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTACCCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
*
4003805 GTTTTTTT
66 GTATTTTT
*
4003813 GCGGCGCCTT-CCCAAAAACGCCGCTAAA
1 GCGGCG-CTTACCCAAAAACGCCACTAAA
4003841 GCCCTGAGCA
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
73 90 0.97
74 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (73 bp):
GCGGCGCTTACCCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTGGGGCTTAG
GTATTTTT
Found at i:4003997 original size:115 final size:115
Alignment explanation
Indices: 4003740--4004035 Score: 425
Period size: 115 Copynumber: 2.6 Consensus size: 115
4003730 AGGTATTTTT
* *
4003740 GCGGCGCTTACTTAAAAACGCCACTAAATCGCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCACTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* *
4003805 G-TTTTTTTGCGGCGCCTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
66 GTTTTTTTTGCGGCGCCTTCCCAAAAACGCCGCTAAAACCCTGAACATTA
*
4003854 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCACTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* * *
4003919 GTTTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAACCCTGAACATTA
66 GTTTTTTTTGCGGCGCCTTCCCAAAAACGCCGCTAAAACCCTGAACATTA
* * * ** * * *
4003969 GCGGCACTTTA-TTAAAAATGCCGCTAAATCCCTGAAAGCTTGGAAAATGACATCGTTGGGCTTA
1 GCGGCAC-TTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA
4004033 GGT
65 GGT
4004036 GCTTTGCGGC
Statistics
Matches: 165, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
114 65 0.39
115 97 0.59
116 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (115 bp):
GCGGCACTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
GTTTTTTTTGCGGCGCCTTCCCAAAAACGCCGCTAAAACCCTGAACATTA
Found at i:4004617 original size:23 final size:23
Alignment explanation
Indices: 4004585--4004628 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
4004575 AACTAAGCTC
*
4004585 ACTTACTTTTCTAGTTTATTTCAT
1 ACTTACTTTTCTA-TTAATTTCAT
4004609 ACTT-CTTTTCTATTAATTTC
1 ACTTACTTTTCTATTAATTTC
4004629 TTGCCATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 8 0.42
24 4 0.21
ACGTcount: A:0.20, C:0.18, G:0.02, T:0.59
Consensus pattern (23 bp):
ACTTACTTTTCTATTAATTTCAT
Found at i:4010699 original size:18 final size:17
Alignment explanation
Indices: 4010679--4010744 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 17
4010669 CATATATAAT
4010679 ATATAAAAAATTTAAAA
1 ATATAAAAAATTTAAAA
4010696 TATATAATTATAAAGTTTAAAA
1 -ATATAA--A-AAA-TTTAAAA
4010718 ATAATATAAAAA-TTAAAA
1 AT-ATA-AAAAATTTAAAA
4010736 AT-TAAAAAA
1 ATATAAAAAA
4010745 GTATATAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 15
0.74 0.00 0.26
Matches are distributed among these distances:
15 5 0.12
16 2 0.05
18 14 0.33
20 4 0.10
21 6 0.14
22 10 0.24
23 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
ATATAAAAAATTTAAAA
Found at i:4022151 original size:158 final size:158
Alignment explanation
Indices: 4021863--4022168 Score: 612
Period size: 158 Copynumber: 1.9 Consensus size: 158
4021853 CGTCCACTCG
4021863 CTAATCTCCCATAAAATGATTAGTTCCTCATGGATCTAATAAACATCATAAACTTGATTGAAAAA
1 CTAATCTCCCATAAAATGATTAGTTCCTCATGGATCTAATAAACATCATAAACTTGATTGAAAAA
4021928 ATAAACAAAAATAATATATCAAGAATAGAGTTTAAGAAGAATCCTGATATATATTGATAATTGTG
66 ATAAACAAAAATAATATATCAAGAATAGAGTTTAAGAAGAATCCTGATATATATTGATAATTGTG
4021993 CGAACAACAATTCGCGAACTCTCACGTC
131 CGAACAACAATTCGCGAACTCTCACGTC
4022021 CTAATCTCCCATAAAATGATTAGTTCCTCATGGATCTAATAAACATCATAAACTTGATTGAAAAA
1 CTAATCTCCCATAAAATGATTAGTTCCTCATGGATCTAATAAACATCATAAACTTGATTGAAAAA
4022086 ATAAACAAAAATAATATATCAAGAATAGAGTTTAAGAAGAATCCTGATATATATTGATAATTGTG
66 ATAAACAAAAATAATATATCAAGAATAGAGTTTAAGAAGAATCCTGATATATATTGATAATTGTG
4022151 CGAACAACAATTCGCGAA
131 CGAACAACAATTCGCGAA
4022169 GAGTTTATGG
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
158 148 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.28
Consensus pattern (158 bp):
CTAATCTCCCATAAAATGATTAGTTCCTCATGGATCTAATAAACATCATAAACTTGATTGAAAAA
ATAAACAAAAATAATATATCAAGAATAGAGTTTAAGAAGAATCCTGATATATATTGATAATTGTG
CGAACAACAATTCGCGAACTCTCACGTC
Found at i:4022725 original size:54 final size:54
Alignment explanation
Indices: 4022661--4022770 Score: 220
Period size: 54 Copynumber: 2.0 Consensus size: 54
4022651 TCGATGTGTG
4022661 TATTCGTAAATATTAAGGTCCTTAGAGTCGTATTAAAATTTGGTTAAGAAATTT
1 TATTCGTAAATATTAAGGTCCTTAGAGTCGTATTAAAATTTGGTTAAGAAATTT
4022715 TATTCGTAAATATTAAGGTCCTTAGAGTCGTATTAAAATTTGGTTAAGAAATTT
1 TATTCGTAAATATTAAGGTCCTTAGAGTCGTATTAAAATTTGGTTAAGAAATTT
4022769 TA
1 TA
4022771 ACATTTAGAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.41
Consensus pattern (54 bp):
TATTCGTAAATATTAAGGTCCTTAGAGTCGTATTAAAATTTGGTTAAGAAATTT
Found at i:4033267 original size:18 final size:18
Alignment explanation
Indices: 4033239--4033276 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
4033229 GTGACCCCTG
4033239 TTTTCAAAATTTTCT-AT
1 TTTTCAAAATTTTCTGAT
4033256 TTTTCTAAAATTTTCTGAT
1 TTTTC-AAAATTTTCTGAT
4033275 TT
1 TT
4033277 GTTTCAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 10 0.53
19 4 0.21
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTCAAAATTTTCTGAT
Found at i:4039272 original size:5 final size:5
Alignment explanation
Indices: 4039262--4039296 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
4039252 TTTGGTTTAT
4039262 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
4039297 ACAAAAGGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:4055321 original size:24 final size:22
Alignment explanation
Indices: 4055282--4055325 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
4055272 TAGCAAAGCA
*
4055282 TCATTTTTTTGTGTGTAAATTT
1 TCATTTTTTTCTGTGTAAATTT
4055304 TCATTCTTTTTCTCGTGTAAAT
1 TCATT-TTTTTCT-GTGTAAAT
4055326 CTTGTGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 6 0.32
24 8 0.42
ACGTcount: A:0.18, C:0.11, G:0.11, T:0.59
Consensus pattern (22 bp):
TCATTTTTTTCTGTGTAAATTT
Found at i:4056855 original size:31 final size:31
Alignment explanation
Indices: 4056781--4056856 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
4056771 ACCTCATGCT
*
4056781 ACATTTTAGTCAATTACATTATCGCATTGTA
1 ACATTTTAGTCACTTACATTATCGCATTGTA
*
4056812 ACATTTTAGTCACTTACGTTATCGCATTGTA
1 ACATTTTAGTCACTTACATTATCGCATTGTA
4056843 ACATTTTAGTCACT
1 ACATTTTAGTCACT
4056857 GAATTGTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (31 bp):
ACATTTTAGTCACTTACATTATCGCATTGTA
Found at i:4057491 original size:2 final size:2
Alignment explanation
Indices: 4057484--4057512 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4057474 TATGGTGATT
4057484 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4057513 TTCTTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4059269 original size:3 final size:3
Alignment explanation
Indices: 4059261--4059319 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
4059251 AACGATTTAG
4059261 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
4059309 AGA AGA AGA AG
1 AGA AGA AGA AG
4059320 TCGATTTGCT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:4073293 original size:19 final size:17
Alignment explanation
Indices: 4073254--4073310 Score: 64
Period size: 17 Copynumber: 3.3 Consensus size: 17
4073244 TAAATTGTTT
4073254 TAAAATTATAAAA--AA
1 TAAAATTATAAAATTAA
*
4073269 TGAAAATTATTAATAATTTA
1 T-AAAATTA-TAA-AATTAA
4073289 TAAAATTATAAAATTAA
1 TAAAATTATAAAATTAA
4073306 TAAAA
1 TAAAA
4073311 ATTCACCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
15 1 0.03
16 7 0.20
17 13 0.37
18 5 0.14
19 7 0.20
20 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
TAAAATTATAAAATTAA
Found at i:4073299 original size:8 final size:8
Alignment explanation
Indices: 4073254--4073310 Score: 53
Period size: 8 Copynumber: 6.6 Consensus size: 8
4073244 TAAATTGTTT
4073254 TAAAATTA
1 TAAAATTA
*
4073262 TAAAA-AA
1 TAAAATTA
4073269 TGAAAATTA
1 T-AAAATTA
4073278 TTAATAATTTA
1 -TAA-AA-TTA
4073289 TAAAATTA
1 TAAAATTA
4073297 TAAAATTAA
1 TAAAATT-A
4073306 TAAAA
1 TAAAA
4073311 ATTCACCTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
7 2 0.05
8 19 0.46
9 11 0.27
10 6 0.15
11 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (8 bp):
TAAAATTA
Found at i:4073472 original size:29 final size:28
Alignment explanation
Indices: 4073401--4073461 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
4073391 AAATAAGTGG
*
4073401 AAAACTAT-AAAATTTTAAAAATTATAAA
1 AAAAC-ATCAAAATTTTAAAAAATATAAA
*
4073429 AAAACATCAATAATTTTAAAAAATATATA
1 AAAACATCAA-AATTTTAAAAAATATAAA
4073458 AAAA
1 AAAA
4073462 TGATATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 2 0.07
28 7 0.24
29 20 0.69
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (28 bp):
AAAACATCAAAATTTTAAAAAATATAAA
Found at i:4073610 original size:19 final size:21
Alignment explanation
Indices: 4073586--4073629 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
4073576 ATTTTTTATT
*
4073586 TTTTAA-ATTTTGTGTC-ATA
1 TTTTAATATTTTATGTCAATA
*
4073605 TTTTAATTTTTTATGTCAATA
1 TTTTAATATTTTATGTCAATA
4073626 TTTT
1 TTTT
4073630 TATTTTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.64
Consensus pattern (21 bp):
TTTTAATATTTTATGTCAATA
Found at i:4073636 original size:22 final size:20
Alignment explanation
Indices: 4073593--4073637 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
4073583 ATTTTTTAAA
*
4073593 TTTTGTGTCATATTTTAATT
1 TTTTATGTCATATTTTAATT
*
4073613 TTTTATGTCAATATTTTTATT
1 TTTTATGTC-ATATTTTAATT
4073634 TTTT
1 TTTT
4073638 CAAATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.20, C:0.04, G:0.07, T:0.69
Consensus pattern (20 bp):
TTTTATGTCATATTTTAATT
Found at i:4073654 original size:47 final size:49
Alignment explanation
Indices: 4073573--4073665 Score: 129
Period size: 47 Copynumber: 1.9 Consensus size: 49
4073563 ACTACTTAAA
* * *
4073573 AATATTTTTTATTTTTTAAATTTTGTGTCATATTTTAATTTTTTATGTC
1 AATATTTTTTATTTTTTAAATTTTGTATCATATTTCAATTATTTATGTC
4073622 AATA-TTTTTATTTTTTCAAA-TTT-TATCATATTTCAATTATTTAT
1 AATATTTTTTATTTTTT-AAATTTTGTATCATATTTCAATTATTTAT
4073666 ATTTTGAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
47 18 0.45
48 15 0.38
49 7 0.17
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.63
Consensus pattern (49 bp):
AATATTTTTTATTTTTTAAATTTTGTATCATATTTCAATTATTTATGTC
Found at i:4073655 original size:17 final size:15
Alignment explanation
Indices: 4073627--4073678 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
4073617 ATGTCAATAT
*
4073627 TTTTATTTTTTCAAA
1 TTTTATATTTTCAAA
*
4073642 TTTTATCATATTTCAAT
1 TTTTAT-AT-TTTCAAA
*
4073659 TATTTATATTTTGAAA
1 T-TTTATATTTTCAAA
4073675 TTTT
1 TTTT
4073679 TTATACTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
15 9 0.30
16 7 0.23
17 9 0.30
18 5 0.17
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (15 bp):
TTTTATATTTTCAAA
Found at i:4073681 original size:17 final size:16
Alignment explanation
Indices: 4073576--4073689 Score: 58
Period size: 17 Copynumber: 6.9 Consensus size: 16
4073566 ACTTAAAAAT
*
4073576 ATTTTTTATTTTTTAA
1 ATTTTTTATATTTTAA
4073592 ATTTTGTGTCATATTTT-A
1 ATTTT-T-T-ATATTTTAA
* *
4073610 A-TTTTT-TA-TGTCA
1 ATTTTTTATATTTTAA
*
4073623 ATATTTTTATTTTTTCAA
1 AT-TTTTTATATTTT-AA
* *
4073641 ATTTTATCATA-TTTCA
1 ATTTT-TTATATTTTAA
*
4073657 ATTATTTATATTTTGAA
1 ATTTTTTATATTTT-AA
4073674 ATTTTTTATACTTTTA
1 ATTTTTTATA-TTTTA
4073690 CAATCATCTA
Statistics
Matches: 73, Mismatches: 12, Indels: 25
0.66 0.11 0.23
Matches are distributed among these distances:
12 2 0.03
13 4 0.05
15 10 0.14
16 15 0.21
17 23 0.32
18 13 0.18
19 6 0.08
ACGTcount: A:0.27, C:0.05, G:0.04, T:0.64
Consensus pattern (16 bp):
ATTTTTTATATTTTAA
Found at i:4081373 original size:23 final size:23
Alignment explanation
Indices: 4081347--4081391 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
4081337 AAAAGTTTAA
*
4081347 GAATATATATATATTATATAAAG
1 GAATATATATATACTATATAAAG
* *
4081370 GAATATGTCTATACTATATAAA
1 GAATATATATATACTATATAAA
4081392 AAAATGCGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (23 bp):
GAATATATATATACTATATAAAG
Found at i:4082417 original size:19 final size:19
Alignment explanation
Indices: 4082389--4082431 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4082379 TGAAGGCATT
*
4082389 GCGCGTGGAGGAG-ACGCAC
1 GCGCGCGGAGGAGCA-GCAC
*
4082408 GCGCGCGGAGGTGCAGCAC
1 GCGCGCGGAGGAGCAGCAC
4082427 GCGCG
1 GCGCG
4082432 GAAGAGGCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.16, C:0.30, G:0.49, T:0.05
Consensus pattern (19 bp):
GCGCGCGGAGGAGCAGCAC
Found at i:4082987 original size:50 final size:50
Alignment explanation
Indices: 4082922--4083397 Score: 266
Period size: 50 Copynumber: 9.5 Consensus size: 50
4082912 TTTGGAAAGT
* * **
4082922 AAGATTCGTCATTGTGACTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGACTTTAATCTTTTCCACTGCAATGTCGGGGAAGC
** * * * **** * * *
4082972 GTGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACACCACCTGGGAGGT
1 AAGATTCGCCGTTGTGACTTTAATCTTTTCCACTGCAATGTCGGGGAAGC
* * **
4083022 AAGATTCGCTGTGGT-AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGA-CTTTAATCTTTTCCACTGCAATGTCGGGGAAGC
* * ** * ** * * *
4083072 GAGATTCACCGACGTGTCTTTAATCTGCTCCACTGCACTGCCTGGGG-AGT
1 AAGATTCGCCGTTGTGACTTTAATCTTTTCCACTGCAATGTC-GGGGAAGC
* * * *
4083122 AAGACTCGCTGTTGT-AGCTTTAATCTTTTTCACTGTAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGA-CTTTAATCTTTTCCACTGCAATGTCGGGGAAGC
* * * * * * * * *
4083172 AAGGTTCACCGTTGTGGCGTTAATCTGTTCCACTGC-ATCGCCTGAGAAGT
1 AAGATTCGCCGTTGTGACTTTAATCTTTTCCACTGCAAT-GTCGGGGAAGC
* * * * *
4083222 AAGATTTGCTGTGGT-AGCTTTAATATTTTCAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGA-CTTTAATCTTTTCCACTGCAATGTCGGGGAAGC
* * * * * * *
4083272 GAGATTCACCGATGTGACTTTAGTCTGTTCCACTGCACT-TCCTGGGGAA-T
1 AAGATTCGCCGTTGTGACTTTAATCTTTTCCACTGCAATGT-C-GGGGAAGC
* * ** *
4083322 AAGACTCGCTGTTGT-AGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGC
1 AAGATTCGCCGTTGTGA-CTTTAATCTTTTCCACTGCAATGTCGGGGAAGC
* *
4083372 AAGATTCGCCGTTGTGGCGTTAATCT
1 AAGATTCGCCGTTGTGACTTTAATCT
4083398 GTTCAACTAC
Statistics
Matches: 296, Mismatches: 114, Indels: 32
0.67 0.26 0.07
Matches are distributed among these distances:
49 13 0.04
50 269 0.91
51 14 0.05
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (50 bp):
AAGATTCGCCGTTGTGACTTTAATCTTTTCCACTGCAATGTCGGGGAAGC
Found at i:4083093 original size:100 final size:100
Alignment explanation
Indices: 4082939--4083413 Score: 610
Period size: 100 Copynumber: 4.8 Consensus size: 100
4082929 GTCATTGTGA
* *
4082939 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGTGATTCGCCGTTGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* * *
4083004 CTACACCACCT-GGGAGGTAAGATTCGCTGTGGTAG
66 CTGCACCGCCTGGGGA-GTAAGACTCGCTGTGGTAG
** * *
4083039 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGACGTGTCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* *
4083104 CTGCACTGCCTGGGGAGTAAGACTCGCTGTTGTAG
66 CTGCACCGCCTGGGGAGTAAGACTCGCTGTGGTAG
* * * * *
4083139 CTTTAATCTTTTTCACTGTAATGTCGGGGAAGCAAGGTTCACCGTTGTGGCGTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* * * * *
4083204 CTGCATCGCCTGAGAAGTAAGATTTGCTGTGGTAG
66 CTGCACCGCCTGGGGAGTAAGACTCGCTGTGGTAG
* * * * *
4083239 CTTTAATATTTTCAACTGCAATGTCGGGGAAGCGAGATTCACCGATGTGACTTTAGTCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGTTGTGGCTTTAATCTGTTCCA
** * *
4083304 CTGCACTTCCTGGGGAATAAGACTCGCTGTTGTAG
66 CTGCACCGCCTGGGGAGTAAGACTCGCTGTGGTAG
* * * * *
4083339 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCAA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGTTGTGGCTTTAATCTGTTCCA
*
4083404 CTACACCGCC
66 CTGCACCGCC
4083414 AAGGAAGTAG
Statistics
Matches: 315, Mismatches: 59, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
100 311 0.99
101 4 0.01
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGTTGTGGCTTTAATCTGTTCCA
CTGCACCGCCTGGGGAGTAAGACTCGCTGTGGTAG
Found at i:4083262 original size:200 final size:200
Alignment explanation
Indices: 4082939--4083410 Score: 737
Period size: 200 Copynumber: 2.4 Consensus size: 200
4082929 GTCATTGTGA
** *
4082939 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGTGATTCGCCGTTGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
* * * *
4083004 CTACACCACCTGGGAGGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGA
66 CTACACCACCTGAGAAGTAAGATTCGCTGTGGTAGCTTTAATATTTTCAACTGCAATGTCGGGGA
* *
4083069 AGCGAGATTCACCGACGTGTCTTTAATCTGCTCCACTGCACTGCCTGGGGAGTAAGACTCGCTGT
131 AGCGAGATTCACCGACGTGACTTTAATCTGCTCCACTGCACTGCCTGGGGAATAAGACTCGCTGT
4083134 TGTAG
196 TGTAG
* * * *
4083139 CTTTAATCTTTTTCACTGTAATGTCGGGGAAGCAAGGTTCACCGTTGTGGCGTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
* * * *
4083204 CTGCATCGCCTGAGAAGTAAGATTTGCTGTGGTAGCTTTAATATTTTCAACTGCAATGTCGGGGA
66 CTACACCACCTGAGAAGTAAGATTCGCTGTGGTAGCTTTAATATTTTCAACTGCAATGTCGGGGA
* * * *
4083269 AGCGAGATTCACCGATGTGACTTTAGTCTGTTCCACTGCACTTCCTGGGGAATAAGACTCGCTGT
131 AGCGAGATTCACCGACGTGACTTTAATCTGCTCCACTGCACTGCCTGGGGAATAAGACTCGCTGT
4083334 TGTAG
196 TGTAG
* *
4083339 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCAA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
4083404 CTACACC
66 CTACACC
4083411 GCCAAGGAAG
Statistics
Matches: 243, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
200 243 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (200 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
CTACACCACCTGAGAAGTAAGATTCGCTGTGGTAGCTTTAATATTTTCAACTGCAATGTCGGGGA
AGCGAGATTCACCGACGTGACTTTAATCTGCTCCACTGCACTGCCTGGGGAATAAGACTCGCTGT
TGTAG
Found at i:4084666 original size:15 final size:14
Alignment explanation
Indices: 4084639--4084670 Score: 55
Period size: 14 Copynumber: 2.2 Consensus size: 14
4084629 AGCCTTTCCA
4084639 TCATTTTTTATTTT
1 TCATTTTTTATTTT
4084653 TCATTTTTTCATTTT
1 TCATTTTTT-ATTTT
4084668 TCA
1 TCA
4084671 CATTTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (14 bp):
TCATTTTTTATTTT
Found at i:4085624 original size:12 final size:12
Alignment explanation
Indices: 4085607--4085646 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
4085597 TCTTTCTTCT
4085607 TTTTGTTTTTGA
1 TTTTGTTTTTGA
4085619 TTTTGTTTTTGA
1 TTTTGTTTTTGA
*
4085631 TTTTGATTTTGA
1 TTTTGTTTTTGA
4085643 TTTT
1 TTTT
4085647 AATTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.10, C:0.00, G:0.15, T:0.75
Consensus pattern (12 bp):
TTTTGTTTTTGA
Found at i:4085629 original size:18 final size:19
Alignment explanation
Indices: 4085606--4085646 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
4085596 CTCTTTCTTC
*
4085606 TTTTTGTTTTTGATTTTG-
1 TTTTTGATTTTGATTTTGA
4085624 TTTTTGATTTTGATTTTGA
1 TTTTTGATTTTGATTTTGA
4085643 TTTT
1 TTTT
4085647 AATTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.10, C:0.00, G:0.15, T:0.76
Consensus pattern (19 bp):
TTTTTGATTTTGATTTTGA
Found at i:4085651 original size:12 final size:12
Alignment explanation
Indices: 4085607--4085652 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
4085597 TCTTTCTTCT
*
4085607 TTTTGTTTTTGA
1 TTTTGATTTTGA
*
4085619 TTTTGTTTTTGA
1 TTTTGATTTTGA
4085631 TTTTGATTTTGA
1 TTTTGATTTTGA
*
4085643 TTTTAATTTT
1 TTTTGATTTT
4085653 TTTTTTGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.74
Consensus pattern (12 bp):
TTTTGATTTTGA
Found at i:4085651 original size:18 final size:18
Alignment explanation
Indices: 4085613--4085652 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
4085603 TTCTTTTTGT
* *
4085613 TTTTGATTTTGTTTTTGA
1 TTTTGATTTTGATTTTAA
4085631 TTTTGATTTTGATTTTAA
1 TTTTGATTTTGATTTTAA
4085649 TTTT
1 TTTT
4085653 TTTTTTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.72
Consensus pattern (18 bp):
TTTTGATTTTGATTTTAA
Found at i:4092870 original size:38 final size:39
Alignment explanation
Indices: 4092816--4092899 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 39
4092806 AGTATTTAAT
* * * *
4092816 TGTCTTAATTTGAACATCATTAATATGAG-TTTTAATTA
1 TGTCATAATCTGAACATCATTAATAAGAGTTTTTAAGTA
* *
4092854 TGTCATAATCTGAACATCTTTAATAAGGGTTTTTAAGTA
1 TGTCATAATCTGAACATCATTAATAAGAGTTTTTAAGTA
4092893 TGTCATA
1 TGTCATA
4092900 GTTTAGGACA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
38 24 0.62
39 15 0.38
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (39 bp):
TGTCATAATCTGAACATCATTAATAAGAGTTTTTAAGTA
Found at i:4092957 original size:38 final size:40
Alignment explanation
Indices: 4092882--4092961 Score: 128
Period size: 38 Copynumber: 2.0 Consensus size: 40
4092872 TTTAATAAGG
*
4092882 GTTTTTAAGTATGTCATAGTTTAGGACATCTTAAATATAT
1 GTTTTGAAGTATGTCATAGTTTAGGACATCTTAAATATAT
*
4092922 GTTTTGAA-TATGTCCTAGTTTA-GACATCTTAAATATAT
1 GTTTTGAAGTATGTCATAGTTTAGGACATCTTAAATATAT
4092960 GT
1 GT
4092962 CTTTAGTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 18 0.47
39 13 0.34
40 7 0.18
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (40 bp):
GTTTTGAAGTATGTCATAGTTTAGGACATCTTAAATATAT
Found at i:4095597 original size:26 final size:26
Alignment explanation
Indices: 4095540--4095601 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
4095530 GAGGTTGTAG
**
4095540 ACTGAGCTCGCATGATGGGATCACGG
1 ACTGAGCTCGCATGATGGGATCACAA
* * *
4095566 ATTGAGCTCTCATGATGGGATCGCAA
1 ACTGAGCTCGCATGATGGGATCACAA
4095592 ACTGAGCTCG
1 ACTGAGCTCG
4095602 TAGCTCACTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.23
Consensus pattern (26 bp):
ACTGAGCTCGCATGATGGGATCACAA
Found at i:4095849 original size:11 final size:11
Alignment explanation
Indices: 4095833--4095857 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4095823 TTACACTAGT
4095833 GTAAAATATAA
1 GTAAAATATAA
4095844 GTAAAATATAA
1 GTAAAATATAA
4095855 GTA
1 GTA
4095858 GTTTTACACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (11 bp):
GTAAAATATAA
Found at i:4100040 original size:17 final size:17
Alignment explanation
Indices: 4100015--4100052 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
4100005 AACTATTCCA
*
4100015 CAATTTTGAGTCATTCT
1 CAATCTTGAGTCATTCT
4100032 CAATCTTGAGTCATTCT
1 CAATCTTGAGTCATTCT
4100049 CAAT
1 CAAT
4100053 TTTTCAACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (17 bp):
CAATCTTGAGTCATTCT
Found at i:4103508 original size:9 final size:9
Alignment explanation
Indices: 4103496--4103527 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
4103486 TGATATATAT
4103496 TTATGTAAG
1 TTATGTAAG
4103505 TTATGTAAG
1 TTATGTAAG
4103514 TTATGTAAG
1 TTATGTAAG
4103523 TTATG
1 TTATG
4103528 ATCCAAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4103517 original size:18 final size:18
Alignment explanation
Indices: 4103469--4103527 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
4103459 ACCCAAAGTT
*
4103469 TTATGTAAGTTATGATATG
1 TTATGTAAGTTATG-TAAG
* * *
4103488 ATATAT-ATTTATGTAAG
1 TTATGTAAGTTATGTAAG
4103505 TTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAG
4103523 TTATG
1 TTATG
4103528 ATCCAAAGTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
17 7 0.22
18 21 0.66
19 4 0.12
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTATGTAAG
Found at i:4103526 original size:27 final size:27
Alignment explanation
Indices: 4103469--4103527 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
4103459 ACCCAAAGTT
* *
4103469 TTATGTAAGTTATGATATGATATATAT
1 TTATGTAAGTTATGATAAGATATATAG
* *
4103496 TTATGTAAGTTATG-TAAGTTATGTAAG
1 TTATGTAAGTTATGATAAGATATAT-AG
4103523 TTATG
1 TTATG
4103528 ATCCAAAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATGATAAGATATATAG
Found at i:4104332 original size:25 final size:25
Alignment explanation
Indices: 4104242--4104335 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
4104232 ATACTACCCT
* *
4104242 ACAGCTCATAGGAGCTTACCGATTC
1 ACAGCTCATATGAGCATACCGATTC
* *
4104267 ACAGCTCATATGAGCTTACCGATTG
1 ACAGCTCATATGAGCATACCGATTC
* *
4104292 ACAGCTCCAGA-GAGCATACCAATTC
1 ACAGCT-CATATGAGCATACCGATTC
*
4104317 ACAGCTTATATGAGCATAC
1 ACAGCTCATATGAGCATAC
4104336 ATGTATATGA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
24 2 0.03
25 54 0.92
26 3 0.05
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (25 bp):
ACAGCTCATATGAGCATACCGATTC
Found at i:4106361 original size:51 final size:51
Alignment explanation
Indices: 4106209--4106348 Score: 212
Period size: 50 Copynumber: 2.8 Consensus size: 51
4106199 TGAAAGTGAA
* *
4106209 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAT
* *
4106259 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATTGGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAT
*
4106310 AGTGATGGTCACATGTGTAGTACTATGCGCAGGCTACTA
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
4106349 TGTGAACCGG
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
49 4 0.05
50 41 0.51
51 32 0.40
52 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (51 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAT
Found at i:4124344 original size:44 final size:44
Alignment explanation
Indices: 4124277--4125101 Score: 339
Period size: 44 Copynumber: 17.6 Consensus size: 44
4124267 AAAAATGGTG
* *
4124277 AATCTTATCTCTCTGATG-TTACAGTGGAGCAGATTGAATCCAGA
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCCAGA
* * * * *
4124321 AATCTTATCTCCCTTAGAGTACAGCGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * ***
4124365 AATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATA-A
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* *
4124407 AGGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGA
1 A--ATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAGCCAGA
* * *
4124463 AATCTTATCTCCCTGAGATTATAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * ***
4124507 AATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATA-A
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* *
4124549 AGGATCTTATCTCTCTGA-AGTTAAAGTAGAGTAAATCGCATCAGATTGAAGCCAGA
1 A--ATCTTATCTCCCTGAGA-TTACAGT-G-G---A--G---CAGATTGAAGCCAGA
* * *
4124605 AATCTTATCTCCCTGAGATTATAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * * * * ***
4124649 AATCCTATCTCCTTGAGGTTACAGTGGAGCGGATTAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * *
4124692 GATATTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGA
1 AATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAGCCAGA
* * * *
4124746 AATCTTATCTCTCTGATATTACAGCGGAGCAGATTGAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * ***
4124790 AATCCTATTTCCCTGAGATTACAGTGGAGCAGATT-AAAATA-A
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* *
4124832 AGGATCTTATCTCTCTGA-AGTTCCAGTAGAGTAGATCGCATCAGATTGAAGCCAGA
1 A--ATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAGCCAGA
* * * * * *
4124888 AATCTTATCTCCTTGAGATTACAGCGGAGTAGACTAAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * ***
4124932 AATCCTATTTCCCTGAGATTACAGTGGAGCAGATT-AAAATA-A
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * *
4124974 AGGATCTTATCTCTCTGA-AGTTCCAGTAGAGTAGATCGCATCAGATTGAATCCAGA
1 A--ATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAGCCAGA
** * *
4125030 AATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
* * *
4125074 AATCCTATTTCCCTGAGATTACGGTGGA
1 AATCTTATCTCCCTGAGATTACAGTGGA
4125102 ATAGACCAAA
Statistics
Matches: 582, Mismatches: 121, Indels: 156
0.68 0.14 0.18
Matches are distributed among these distances:
42 4 0.01
43 38 0.07
44 349 0.60
45 1 0.00
46 2 0.00
47 8 0.01
48 2 0.00
49 16 0.03
50 1 0.00
51 7 0.01
52 1 0.00
53 10 0.02
54 117 0.20
55 18 0.03
56 8 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGA
Found at i:4124497 original size:142 final size:142
Alignment explanation
Indices: 4124306--4125101 Score: 1288
Period size: 142 Copynumber: 5.6 Consensus size: 142
4124296 TACAGTGGAG
* * * *
4124306 CAGATTGAATCCAGAAATCTTATCTCCCTTAGAGTACAGCGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
*
4124371 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
4124436 AGTAGATCGCAT
131 AGTAGATCGCAT
* * *
4124448 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTATAGTGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
*
4124513 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAAAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
*
4124578 AGTAAATCGCAT
131 AGTAGATCGCAT
* * *
4124590 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTATAGTGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* * *
4124655 ATCTCCTTGAGGTTACAGTGGAGCGGATT-AAATAAAGGATATTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
4124719 AGTAGATCGCAT
131 AGTAGATCGCAT
* *
4124731 CAGATTGAAGCCAGAAATCTTATCTCTCTGATATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* * *
4124796 ATTTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTCCAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
4124861 AGTAGATCGCAT
131 AGTAGATCGCAT
* * * *
4124873 CAGATTGAAGCCAGAAATCTTATCTCCTTGAGATTACAGCGGAGTAGACTAAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* * *
4124938 ATTTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTCCAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
4125003 AGTAGATCGCAT
131 AGTAGATCGCAT
* * *
4125015 CAGATTGAATCCAGAAATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* *
4125080 ATTTCCCTGAGATTACGGTGGA
66 ATCTCCCTGAGATTACAGTGGA
4125102 ATAGACCAAA
Statistics
Matches: 617, Mismatches: 36, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
141 129 0.21
142 488 0.79
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (142 bp):
CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
AGTAGATCGCAT
Found at i:4124529 original size:98 final size:97
Alignment explanation
Indices: 4124350--4125095 Score: 272
Period size: 98 Copynumber: 7.8 Consensus size: 97
4124340 TACAGCGGAG
* * * * * *** * *
4124350 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG-GATCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCCAGTAATCC
* *
4124414 TATCTCTCT-AAAGTTACAGTAGAGTAGATCGCAT
65 TATCTCCCTGAGA-TTACAGT-GAGTAGATCGCAT
* *
4124448 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTATAGTGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTAATCCT
*
4124513 ATCTCCCTGAGATTACAGTG-G-AG--CGGAT
66 ATCTCCCTGAGATTACAGTGAGTAGATCGCAT
* * * * * *
4124541 TAAAAT-AA---AG-GATCTTATCTCTCTGA-AGTTAAAGTAGAGTAAATCGCATCAGATTGAAG
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGA-TTACAGT-G-G---A--G---CAGATTGAAG
* * *
4124600 CCAGAAATCTTATCTCCCTGAGATT--A-T-AGT-G---G-AG
55 CCAGTAATCCTATCTCCCTGAGATTACAGTGAGTAGATCGCAT
* * * * * * * *** *
4124634 CAGATTGAAGCTAGTAATCCTATCTCCTTGAGGTTACAGTGGAGCGGATTAAATAAAGGATAT--
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTA-ATCC
*
4124697 TATCTCTCTGA-AGTTACAGTAGAGTAGATCGCAT
65 TATCTCCCTGAGA-TTACAGT-GAGTAGATCGCAT
* * *
4124731 CAGATTGAAGCCAGAAATCTTATCTCTCTGATATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTAATCCT
*
4124796 ATTTCCCTGAGATTACAGTG-G-AG--CAG-AT
66 ATCTCCCTGAGATTACAGTGAGTAGATC-GCAT
* * * * * *
4124824 TAAAAT-AA---AG-GATCTTATCTCTCTGA-AGTTCCAGTAGAGTAGATCGCATCAGATTGAAG
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAG
* * * *
4124883 CCAGAAATCTTATCTCCTTGAGATTACAGCGGAGTAGA---C-T
55 CCAGTAATCCTATCTCCCTGAGATTACAG-TGAGTAGATCGCAT
* * * * *** * *
4124923 ---A---AAGCCAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAG-GATCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAAGCCAGTAATCC
* *
4124981 TATCTCTCTGA-AGTTCCAGTAGAGTAGATCGCAT
65 TATCTCCCTGAGA-TTACAGT-GAGTAGATCGCAT
* ** *
4125015 CAGATTGAATCCAGAAATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTAATCCT
*
4125080 ATTTCCCTGAGATTAC
66 ATCTCCCTGAGATTAC
4125096 GGTGGAATAG
Statistics
Matches: 477, Mismatches: 98, Indels: 146
0.66 0.14 0.20
Matches are distributed among these distances:
86 1 0.00
87 15 0.03
88 81 0.17
89 12 0.03
90 2 0.00
91 4 0.01
92 8 0.02
93 24 0.05
94 6 0.01
95 11 0.02
96 8 0.02
97 62 0.13
98 233 0.49
99 7 0.01
100 1 0.00
101 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (97 bp):
CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTAATCCT
ATCTCCCTGAGATTACAGTGAGTAGATCGCAT
Found at i:4125296 original size:50 final size:50
Alignment explanation
Indices: 4125242--4125618 Score: 333
Period size: 50 Copynumber: 7.5 Consensus size: 50
4125232 GCCATGGAAC
* * *
4125242 AGATTAAAGGCGCAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
*** * * * * * ** *
4125292 AGATTAAAGCCACAACAACGAATCTTACCTCCCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* * * *
4125342 AGATTAAAGCTACAACGGTGAATCTTGCCTCCATGACATTGCGGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* * * * * * * * **
4125392 AGACTAAAGCCACAGCGGTGAGTGTTACTTCCCTGGCAATGCAGTGAAGT
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
4125442 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCC-GACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGC-TTCCCTGACATTGCAGTTAAAA
* * * ** ** * * * * * **
4125492 GGATTAAAGTCACAATGACGAATCTCACACTCCCAGGCAGTGCAGTGAAGC
1 AGATTAAAGCCACAACGGTGAATCTTGC-TTCCCTGACATTGCAGTTAAAA
4125543 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* *
4125593 AGATTAAAGCCACAATGGCGAATCTT
1 AGATTAAAGCCACAACGGTGAATCTT
4125619 ACTTTCCAAA
Statistics
Matches: 245, Mismatches: 80, Indels: 4
0.74 0.24 0.01
Matches are distributed among these distances:
50 208 0.85
51 37 0.15
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
Found at i:4125569 original size:101 final size:99
Alignment explanation
Indices: 4125121--4125620 Score: 531
Period size: 100 Copynumber: 5.1 Consensus size: 99
4125111 AGAATTACAG
* * *
4125121 ATCTTACCTCCCAGGC-GATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGTTTCCCCG
1 ATCTTACCTCCCAGGCAG-TGCAGTGAAGCAGATTAAAGCCACAACGGTGAATCTTGCTT-CCCG
*
4125185 ACATTGC--------AGATTAAAGCCACAACGGCGA
64 ACATTGCAGTTAAAAAGATTAAAGCCACAACGACGA
* * ** * *
4125213 ATCCTACTTCCTTGGC-GATGCCA-TGGAA-CAGATTAAAGGCGCAACGGTGAATCTTGCTTCCC
1 ATCTTACCTCCCAGGCAG-TG-CAGT-GAAGCAGATTAAAGCCACAACGGTGAATCTTGCTT-CC
*
4125275 CGACATTGCAGTTAAAAAGATTAAAGCCACAACAACGA
62 CGACATTGCAGTTAAAAAGATTAAAGCCACAACGACGA
* * *
4125313 ATCTTACCTCCCAGGCAGTGCAGTGGAA-CAGATTAAAGCTACAACGGTGAATCTTGCCTCCATG
1 ATCTTACCTCCCAGGCAGTGCAGT-GAAGCAGATTAAAGCCACAACGGTGAATCTTGCTTCC-CG
* * * **
4125377 ACATTGCGGTTAAAAAGACTAAAGCCACAGCGGTGA
64 ACATTGCAGTTAAAAAGATTAAAGCCACAACGACGA
* * * * * *
4125413 GTGTTACTTCCCTGGCAATGCAGTGAAGTAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGA
1 ATCTTACCTCCCAGGCAGTGCAGTGAAGCAGATTAAAGCCACAACGGTGAATCTTGC-TTCCCGA
* * *
4125478 CATTGCAGTTAAAAGGATTAAAGTCACAATGACGA
65 CATTGCAGTTAAAAAGATTAAAGCCACAACGACGA
*
4125513 ATCTCACACTCCCAGGCAGTGCAGTGAAGCAGATTAAAGCCACAACGGTGAATCTTGCTTCCCTG
1 ATCTTAC-CTCCCAGGCAGTGCAGTGAAGCAGATTAAAGCCACAACGGTGAATCTTGCTTCCC-G
* *
4125578 ACATTGCAGTTAAAAAGATTAAAGCCACAATGGCGA
64 ACATTGCAGTTAAAAAGATTAAAGCCACAACGACGA
4125614 ATCTTAC
1 ATCTTAC
4125621 TTTCCAAAAG
Statistics
Matches: 337, Mismatches: 54, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
92 56 0.17
93 4 0.01
99 7 0.02
100 180 0.53
101 90 0.27
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (99 bp):
ATCTTACCTCCCAGGCAGTGCAGTGAAGCAGATTAAAGCCACAACGGTGAATCTTGCTTCCCGAC
ATTGCAGTTAAAAAGATTAAAGCCACAACGACGA
Done.