Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 134 of 141
Found at i:43287218 original size:86 final size:86
Alignment explanation
Indices: 43287073--43287238 Score: 253
Period size: 86 Copynumber: 1.9 Consensus size: 86
43287063 ACGGAATTAT
* *
43287073 AGATAAAGTATAAATTTTTAAATGGTTAAAATAGAAATTTACCATGTAATGCATAGCAAACTTCT
1 AGATAAAGTATAAATTTTTAAATGGTTAAAATAGAAATTTACAATGTAATGCATAGCAAACTGCT
43287138 CGGGTCTTATGATTCTTCGTA
66 CGGGTCTTATGATTCTTCGTA
* * * *
43287159 AGATATAGTGTAAATTTTTAAGA-GGTTAAAATGGAAATTTACAATGTAATGCATAGCAAAGTGC
1 AGATAAAGTATAAATTTTTAA-ATGGTTAAAATAGAAATTTACAATGTAATGCATAGCAAACTGC
*
43287223 TCGTGTCTTATGATTC
65 TCGGGTCTTATGATTC
43287239 CTTTTAACTT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
86 71 0.99
87 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (86 bp):
AGATAAAGTATAAATTTTTAAATGGTTAAAATAGAAATTTACAATGTAATGCATAGCAAACTGCT
CGGGTCTTATGATTCTTCGTA
Found at i:43287417 original size:143 final size:142
Alignment explanation
Indices: 43287158--43287831 Score: 848
Period size: 143 Copynumber: 4.7 Consensus size: 142
43287148 GATTCTTCGT
* * * * * *
43287158 AAGATATAGTGTAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTAATGCATAGCAAAGTGC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * *
43287223 TCGTGTCTTATGATTCCTTTTAACTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAAGTT
66 TCGTGTCTTATGATT-TTTTTAATTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAAGTC
*
43287288 TGTTACGAAATTA
130 CGTTACGAAATTA
* * * * * *
43287301 TAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAAGGTAATGCATAGCAAAGTGC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * *
43287366 TCGTGTCTTATGATTCCTTTTAACTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAAGTT
66 TCGTGTCTTATGATT-TTTTTAATTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAAGTC
*
43287431 TGTTACGAAATTA
130 CGTTACGAAATTA
*
43287444 TAGATAAAGTATAAATTTTTAAGAGGTTAAAAT-GAAATTTACCATGTGATGCATAGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * * * * * * *
43287508 TCGTGTTTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTCAAATTTCGAGACTAAGTCC
66 TCGTGTCTTATGATTTTTTTAATTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAAGTCC
* *
43287573 GATAC-AGAATCA
131 GTTACGA-AATTA
* * * * ** *
43287585 AATATAAAGTATAAAATTTTAAAAGGGTAAAACAGAAATTTACCATGTGATGCATAGCAAACTTT
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * * * * *
43287650 TTGTGTCTTATGATTGTTTTTAATTTCATTTTTAACTATTGAAACTCGAATTTTGAGTCGAACTC
66 TCGTGTCTTATGATT-TTTTTAATTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAAGTC
*
43287715 CGTTACGAAATGA
130 CGTTACGAAATTA
*
43287728 AACATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * **
43287793 TAGTGTTTTATGATTTTTTTAATTTCGGTTTTAAATATT
66 TCGTGTCTTATGATTTTTTTAATTTCATTTTTAAATATT
43287832 TAAATTTGAA
Statistics
Matches: 472, Mismatches: 55, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
140 1 0.00
141 74 0.16
142 104 0.22
143 292 0.62
144 1 0.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (142 bp):
AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
TCGTGTCTTATGATTTTTTTAATTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAAGTCC
GTTACGAAATTA
Found at i:43287505 original size:639 final size:645
Alignment explanation
Indices: 43286533--43287807 Score: 1552
Period size: 639 Copynumber: 2.0 Consensus size: 645
43286523 TAAAGTATAC
* * * * * * *
43286533 ATTTTTAAGATGTTAAAATGAAAATTTATAATTTGATGCATAGCAAAGTTCTTGTGTGTTATGAT
1 ATTTTTAAGAGGTTAAAATGAAAATTTACAATGTAATGCATAGCAAAGTGCTCGTGTCTTATGAT
* * * * * * *
43286598 TCTTATTAATTTAATTTTTTAATATTAAAACTCGAATTTTGAAGGGATGTCTATTATGGAATTAA
66 TCTTATTAACTTAATTTTTAAATATTAAAACTCCAATTTTGAAGGAAAGTCTATTACGAAATTAA
* * * * *
43286663 AGATAAAGTTTAAATATTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTGT
131 AGATAAAGTATAAATATTTAAGAGGTTAAAATGGAAATTTACAAGGTAATGCATAGAAAACGTGT
* * * * * *
43286728 CGCGTTTTATGATTTTATTTAATTTTATTTTTAAATATTAAAATTCGAATTTTGAGGAAACGTCG
196 CGCGTCTTATGATTCTATTTAACTTCATTTTTAAATATTAAAACTCCAATTTTGAGGAAACGTCG
* * *
43286793 GTTACAAAATCAAAGATAAATTATAAATTTTTAAGAGATTGAAATGGAAATTTATATGTGATGCA
261 GTTACAAAATCAAAGATAAAGTATAAATTTTTAAGAGATTAAAATGGAAATTTACATGTGATGCA
* * * *
43286858 TTGCAAACTTGTCGTGTTTTATGA-TTTTTAATTTAATTATTAAATATTAAAGTTCGAATTTCGA
326 TAGCAAACTTCTCGTGTTTTATGATTTTTTAATTTAATTATTAAATATTAAAATTCAAATTTCGA
* * ** * * * * *
43286922 GACCAAATCGGTTATTG-ATCAAA-ATTAAGGTACAAATTTTTAAGAGGTTAAAATAGAAATTTA
391 GACCAAATCCGATACAGAATCAAATA-TAAAGTACAAAATTTTAAAAGGGTAAAACAGAAATTTA
*
43286985 CAATGTGATGCATAGCGAA-GT-TC-TCA-TTTTAATTTCATTTTTAAATATTAAAACTCGAATT
455 CAATGTGATGCATAGCAAATGTGTCTTCATTTTTAATTTCATTTTTAAATATTAAAACTCGAATT
* * * * * *
43287046 TTTAGACAAAGTCCATTACGGAATTATAGATAAAGTATAAATTTTTAA-ATGGTTAAAATAGAAA
520 TTGAGACAAACTCCATTACGAAATGAAACATAAAGTATAAATTTTTAAGA-GGTTAAAATAGAAA
*
43287110 TTTACCATGTAATGCATAGCAAACTTCTCGGGTCTTATGATTCTTCGTAAGATATAGTGTAA
584 TTTACCATGTAATGCATAGCAAACTTCTAGGGTCTTATGATTCTTCGTAAGATATAGTGTAA
*
43287172 ATTTTTAAGAGGTTAAAATGGAAATTTACAATGTAATGCATAGCAAAGTGCTCGTGTCTTATGAT
1 ATTTTTAAGAGGTTAAAATGAAAATTTACAATGTAATGCATAGCAAAGTGCTCGTGTCTTATGAT
* * * *
43287237 TCCTT-TTAACTTCATTTTTAAATATTGAAACTCCAATTTTG-AGGCAAAGTTTGTTACGAAATT
66 T-CTTATTAACTTAATTTTTAAATATTAAAACTCCAATTTTGAAGG-AAAGTCTATTACGAAATT
* * *
43287300 ATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAAGGTAATGCATAGCAAA-GT
129 AAAGATAAAGTATAAATATTTAAGAGGTTAAAATGGAAATTTACAAGGTAATGCATAGAAAACGT
* *
43287364 GCTCGTGTCTTATGATTCCT-TTTAACTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAA
194 G-TCGCGTCTTATGATT-CTATTTAACTTCATTTTTAAATATTAAAACTCCAATTTTGAGG-AAA
** * * * *
43287428 -GTTTGTTACGAAATTATAGATAAAGTATAAATTTTTAAGAGGTTAAAAT-GAAATTTACCATGT
256 CGTCGGTTACAAAATCAAAGATAAAGTATAAATTTTTAAGAGATTAAAATGGAAATTTA-CATGT
* *
43287491 GATGCATAGCAAACTTCTCGTGTTTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTCAA
320 GATGCATAGCAAACTTCTCGTGTTTTATGA-TTTTTTAATTTAATTATTAAATATTAAAATTCAA
* * *
43287556 ATTTCGAGACTAAGTCCGATACAGAATCAAATATAAAGTATAAAATTTTAAAAGGGTAAAACAGA
384 ATTTCGAGACCAAATCCGATACAGAATCAAATATAAAGTACAAAATTTTAAAAGGGTAAAACAGA
* * *
43287621 AATTTACCATGTGATGCATAGCAAACTTTTTGTGTCTTATGATTGTTTTTAATTTCATTTTTAAC
449 AATTTACAATGTGATGCATAGCAAA-----TGTGTC-T-TCA---TTTTTAATTTCATTTTTAAA
* * * *
43287686 TATTGAAACTCGAATTTTGAGTCGAACTCCGTTACGAAATGAAACATAAAGTATAAATTTTTAAG
504 TATTAAAACTCGAATTTTGAGACAAACTCCATTACGAAATGAAACATAAAGTATAAATTTTTAAG
* * * *
43287751 AGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTAGTGTTTTATGATT
569 AGGTTAAAATAGAAATTTACCATGTAATGCATAGCAAACTTCTAGGGTCTTATGATT
43287808 TTTTTAATTT
Statistics
Matches: 530, Mismatches: 81, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
638 13 0.02
639 277 0.52
640 7 0.01
641 47 0.09
642 55 0.10
643 1 0.00
648 2 0.00
649 2 0.00
652 2 0.00
656 123 0.23
657 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (645 bp):
ATTTTTAAGAGGTTAAAATGAAAATTTACAATGTAATGCATAGCAAAGTGCTCGTGTCTTATGAT
TCTTATTAACTTAATTTTTAAATATTAAAACTCCAATTTTGAAGGAAAGTCTATTACGAAATTAA
AGATAAAGTATAAATATTTAAGAGGTTAAAATGGAAATTTACAAGGTAATGCATAGAAAACGTGT
CGCGTCTTATGATTCTATTTAACTTCATTTTTAAATATTAAAACTCCAATTTTGAGGAAACGTCG
GTTACAAAATCAAAGATAAAGTATAAATTTTTAAGAGATTAAAATGGAAATTTACATGTGATGCA
TAGCAAACTTCTCGTGTTTTATGATTTTTTAATTTAATTATTAAATATTAAAATTCAAATTTCGA
GACCAAATCCGATACAGAATCAAATATAAAGTACAAAATTTTAAAAGGGTAAAACAGAAATTTAC
AATGTGATGCATAGCAAATGTGTCTTCATTTTTAATTTCATTTTTAAATATTAAAACTCGAATTT
TGAGACAAACTCCATTACGAAATGAAACATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATT
TACCATGTAATGCATAGCAAACTTCTAGGGTCTTATGATTCTTCGTAAGATATAGTGTAA
Found at i:43287681 original size:284 final size:285
Alignment explanation
Indices: 43287158--43287848 Score: 873
Period size: 284 Copynumber: 2.4 Consensus size: 285
43287148 GATTCTTCGT
* * * * * *
43287158 AAGATATAGTGTAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTAATGCATAGCAAAGTGC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * * * * * * * *
43287223 TCGTGTCTTATGATTCCTTTTAACTTCATTTTTAAATATTGAAACTCCAATTTTGAGGCAAAGTT
66 TCGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGACAAAGTC
* * * * * * * **
43287288 TGTTACGAAATTATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAAGGTAATG
130 CGATACGAAATCAAAGATAAAGTATAAAATTTTAAAAGGGTAAAACAGAAATTTACAAGGTAATG
*
43287353 CATAGCAAAGTGCTCGTGTCTTATGATTCCTTTTAACTTCATTTTTAAATATTGAAACTCCAATT
195 CATAGCAAACTGCTCGTGTCTTATGATTCCTTTTAACTTCATTTTTAAATATTGAAACTCCAATT
* ** *
43287418 TTGAGGCAAAGTTTGTTACGAAATTA
260 TTGAGGCAAACTCCGTTACGAAATGA
*
43287444 TAGATAAAGTATAAATTTTTAAGAGGTTAAAAT-GAAATTTACCATGTGATGCATAGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* *
43287508 TCGTGTTTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTCAAATTTCGAGACTAAGTCC
66 TCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGACAAAGTCC
* * * *
43287573 GATAC-AGAATCAAATATAAAGTATAAAATTTTAAAAGGGTAAAACAGAAATTTACCATGTGATG
131 GATACGA-AATCAAAGATAAAGTATAAAATTTTAAAAGGGTAAAACAGAAATTTACAAGGTAATG
** * ** * * *
43287637 CATAGCAAACTTTTTGTGTCTTATGATTGTTTTTAATTTCATTTTTAACTATTGAAACTCGAATT
195 CATAGCAAACTGCTCGTGTCTTATGATTCCTTTTAACTTCATTTTTAAATATTGAAACTCCAATT
* *
43287702 TTGAGTCGAACTCCGTTACGAAATGA
260 TTGAGGCAAACTCCGTTACGAAATGA
*
43287728 AACATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* ** * **
43287793 TAGTGTTTTATGATTTTTTTAATTTCGGTTTTAAATATTTAAATTTGAATTTCGAG
66 TCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAG
43287849 GCCAAGTCAG
Statistics
Matches: 348, Mismatches: 55, Indels: 5
0.85 0.13 0.01
Matches are distributed among these distances:
283 1 0.00
284 196 0.56
285 121 0.35
286 30 0.09
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (285 bp):
AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
TCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGACAAAGTCC
GATACGAAATCAAAGATAAAGTATAAAATTTTAAAAGGGTAAAACAGAAATTTACAAGGTAATGC
ATAGCAAACTGCTCGTGTCTTATGATTCCTTTTAACTTCATTTTTAAATATTGAAACTCCAATTT
TGAGGCAAACTCCGTTACGAAATGA
Found at i:43293871 original size:143 final size:141
Alignment explanation
Indices: 43292808--43294799 Score: 1699
Period size: 143 Copynumber: 14.1 Consensus size: 141
43292798 AGCGAAGTCG
** * * * *
43292808 ATTAAAATTCAAATTTCGAGGCAAACTCGGCTATAGAATCAAAGATAAAGTATAAATTTTTAAGA
1 ATTAAAATTTGAATTTTGAGGCAAA-TCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
* * * *
43292873 GGTTAAAATGGAAATTTACCATGTGATGCATAGCGAAGTTCTCATGTCTTATGATTCTTTTTAAT
65 GGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATT-TTTTTAAT
43292938 TTCATTTTTAAAT
129 TTCATTTTTAAAT
* * ** * * *
43292951 ATTGAAACTCAAATTTTGAGCCAAAGTCCGTTACGGAATTATAA-ATAAAGTATAAATTTTTACA
1 ATTAAAATTTGAATTTTGAGGCAAA-TCCGTTACAGAATCA-AAGATAAAGTATAAATTTTTA-A
* ** * *
43293015 -AGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTGTTTTATGCTTTTTTTAA
63 GAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATTTTTTT--
*
43293079 AAAATTT-ATTTTTATAT
126 --AATTTCATTTTTAAAT
* ** * ** * * *
43293096 ATTAAAATTTAAATTTCAAGGCAGCATTGGTTACAGAATCAAACATAAAGTATAACTTTTAAAGA
1 ATTAAAATTTGAATTTTGAGGCA-AATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
* * **
43293161 GGTTAAAATGGAAATTTATCATGTGACGCATAGCAAGTTTCTCGTGTTTTATGATTTTTTTAATT
65 GGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATTTTTTTAATT
43293226 TCATTTTTAAAT
130 TCATTTTTAAAT
** ** * ** * *
43293238 ATTAAAATTCAAATTTCAAGGCCAAGTCAATTACAGAATCAAAGATAAAGTACAAATTTTGAAGA
1 ATTAAAATTTGAATTTTGAGG-CAAATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
* * *
43293303 GGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAA-TTCTCGTGTCTTATTATTGTTTTTAA
65 GGTTAAAATGGAAATTTACCATGTGATGCATAGC-AAACTTCTCGTGTTTTATGATT-TTTTTAA
* *
43293367 -TTCATTGTTAGAT
128 TTTCATTTTTAAAT
* * * ** *
43293380 ATTGGAAA-TTGAATTTTGAGTCGAACTCCGTTATGGAATTAAAGATAAAGTATAAATTTTTAAG
1 ATT-AAAATTTGAATTTTGAGGC-AAATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAG
* * * *
43293444 TGATTAAAATGGAAATTTACCA--TG-TG-AT-G--AACTTTTCTTGTTTTATGATTTTTTATAA
64 AGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATTTTTT-TAA
43293502 TTTCATTTTTAAAT
128 TTTCATTTTTAAAT
* * * * * * *
43293516 ATTAAAATTTGAATTTCGACGCAATGTCGGGTACAAAATCAAAGATAAAGTATAAACTTTTAAGA
1 ATTAAAATTTGAATTTTGAGGCAA-ATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
* * * * ** * * ** **
43293581 GGATAAACTGGGAATTTACAATGTGATGCGCAGCAAAGTTCTCATGTCGTATGATTGCTTTAATT
65 GGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATTTTTTTAATT
43293646 T-A-----AAAT
130 TCATTTTTAAAT
* **** * * * * * * * *
43293652 ATTGAAACCCAAATTTTGAGGGGAACTCCGTTACTGAATTAAAGATAAAGTGTAACTTTTCAAGT
1 ATTAAAATTTGAATTTTGA-GGCAAATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
* * * *
43293717 GGTTAAAATGGAAACTTACCATGTGATGCATAGAAAACTTCTCATGTTTTATGAGTTTTTATAAT
65 GGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGA-TTTTTTTAAT
*
43293782 GTCATTTTTAAAT
129 TTCATTTTTAAAT
* ** * * * *
43293795 ATTAAAATTTGAATTTCGAGGCAACATTGGTTACAGAATAAAAAATAAACTATAATTTTTTAAGA
1 ATTAAAATTTGAATTTTGAGGCAA-ATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
* * * ** * * *
43293860 AGTTAATATGGAAATTTACAATGTGATGCATAGTGAAGTTCTCGTGTCTTATGATTGTTTTTAGT
65 GGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATT-TTTTTAAT
43293925 TTCATTTTTAAAT
129 TTCATTTTTAAAT
* * ** * * * *
43293938 ATTGAAACTCAAATTTTGAGGCCAAGTCAGTTAC-GAAATTAAAGATAAAGTATAAAATTTTAA-
1 ATTAAAATTTGAATTTTGAGG-CAAATCCGTTACAG-AATCAAAGATAAAGTATAAATTTTTAAG
* * *
43294001 ATGGTTAAAATGGAAATTTAACATGTGATGCATAGCAAACTTCTAGTGTTTTATGATTTTTTTTA
64 A-GGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATTTTTTTAA
** *
43294066 TTTTGTTATTAAAT
128 TTTCATTTTTAAAT
* * * * *
43294080 ATT-AAATTTCGAATTTTGAGGCCAAGT-CGATTACCGAATAAAAAATAAAGTATAAATTCTTAA
1 ATTAAAATTT-GAATTTTGAGG-CAAATCCG-TTACAGAATCAAAGATAAAGTATAAATTTTTAA
* * * *
43294143 GAGGTTAAGATGGAAATTTACAATGTGATGCATAGCTAAGTTCTCGTGTTTTATGATTCTTTTTA
63 GAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATT-TTTTTA
*
43294208 ATTT-ATTTTTCAAT
127 ATTTCATTTTTAAAT
* * * * * *
43294222 ATTGAAA-CTCACATTTTGAGATG-AAGTCCGTTACAGAATTAAAGATAATGTATAAATTTTTAA
1 ATTAAAATTTGA-ATTTTGAG--GCAAATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAA
* * *
43294285 GTGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGTTTTAT-AATTTTTTAA
63 GAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATTTTTTTAA
*
43294349 TTTCATCTTTAAAT
128 TTTCATTTTTAAAT
* * * * * * * * *
43294363 TTTAAAATTTGAATTTCGAGGCGAATTCAGTTATAGAATCAAATACAAAGCATAGATTTTTAAGA
1 ATTAAAATTTGAATTTTGAGGC-AAATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
* ** * * ** *
43294428 GGTTAAAATGGAAATTTACAATGTGATGCATAGTGAAGTGCTCGTGTCGTATGATTCTTTTTAAG
65 GGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATT-TTTTTAAT
*
43294493 TTGATTTTTAAAT
129 TTCATTTTTAAAT
** * * * * *
43294506 ATTGGAACTCGAATTTTGAGGCAAAGTCCTTTAC-GAAATCATAA-ATAAAGTATAACTTCTTAA
1 ATTAAAATTTGAATTTTGAGGCAAA-TCCGTTACAG-AATCA-AAGATAAAGTATAAATTTTTAA
* * ** * * *
43294569 GAGGTTAAAATGGAAATTTACAATCTGATGCATAGTGAAGTGCTCGTGTCTTATGATTCTTTTTT
63 GAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGA-T-TTTTTT
43294634 AATTTCATTTTTAAAT
126 AATTTCATTTTTAAAT
* * * * * *
43294650 ATTGAAACTTGAATTTTGTGGCAAAGTCCGATACAGAATTATAGATAAAGTATAAATTTTTAAGA
1 ATTAAAATTTGAATTTTGAGGCAAA-TCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
* * **
43294715 GGTTAAAATGGAAATTTATCATGTGATGCAT-GTCAAACTTCTAGTGTTTTATGAAGTTTTT-AT
65 GGTTAAAATGGAAATTTACCATGTGATGCATAG-CAAACTTCTCGTGTTTTATGATTTTTTTAAT
43294778 TTC-TTGTTTAAAT
129 TTCATT-TTTAAAT
43294791 ATTAAAATT
1 ATTAAAATT
43294800 CCTATTTTGA
Statistics
Matches: 1481, Mismatches: 303, Indels: 132
0.77 0.16 0.07
Matches are distributed among these distances:
134 6 0.00
135 22 0.01
136 161 0.11
137 12 0.01
138 5 0.00
139 5 0.00
140 14 0.01
141 132 0.09
142 424 0.29
143 459 0.31
144 127 0.09
145 108 0.07
146 6 0.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.39
Consensus pattern (141 bp):
ATTAAAATTTGAATTTTGAGGCAAATCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAG
GTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGTTTTATGATTTTTTTAATTT
CATTTTTAAAT
Found at i:43297199 original size:142 final size:141
Alignment explanation
Indices: 43296906--43300094 Score: 2820
Period size: 142 Copynumber: 22.4 Consensus size: 141
43296896 AGGGTGTTAC
* * ** * * *
43296906 ATAAAGCATAAATTTTTAAGAGGTTAAAATGAAAATTTAAAATGTGATGCATAGCGAAGTGCTCG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * * * * *
43296971 TGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCAAATTTTGAGGCAAAGTCCGT
66 TGTTTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGT
* * *
43297036 TACAAAATTATAG
129 TACAGAATCAAAG
* * *
43297049 ATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAACTTCTTG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * *
43297114 TGTTTTTATGAATTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTTGAGTCGAAGTCAGTT
66 TG-TTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGTT
*
43297179 ATAGAATCAAAG
130 ACAGAATCAAAG
** * * * * ** * * * *
43297191 ATGCAGTATAAATTTTTAAGAAGTT-AGATGCAAATTTACAATGTGATTTATAACGAAGTTCTTG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * * * *
43297255 TGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGCGGCTAATTCGGT
66 TGTTTTATG-AT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGT
* *
43297320 TATA-AGGTCAAAG
129 TACAGA-ATCAAAG
* * ** * * * **
43297333 ATAAAGTATAAAATTTTAAGAGGTCAAAATAAAAATTTACCATGTGATGCGTAGCGAAGTTCTTA
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
** * * * *
43297398 CATCTTATGATTGTTTTTCAATTTCATTTTTAAATATTAAAACTCAAATTTTGAGTCGAAGTTC-
66 TGTTTTATGA-T-TTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAG-TCG
*
43297462 GTTACGGAATCAAAG
127 GTTACAGAATCAAAG
* * * ** *
43297477 ATAAAGTATTACTTTTTAAGTA-GTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATT
1 ATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTC
* * ** * **
43297541 GTTTTTTTAT-ACTTTTTT-ATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCAAAACCGG
65 G-TGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGG
* *
43297604 ATATAGAATCAAAG
128 TTACAGAATCAAAG
* *
43297618 ATAAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGGGATGCATAGCAAACTTCTC
1 AT-AAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTC
* * *
43297683 GTGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCGGCT
65 GTGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGTT
43297748 ACAGAATCAAAG
130 ACAGAATCAAAG
* * * * *
43297760 ATAAAGTATAAATTTTTAA-ATGATTAAAATGGAAATTTACAATCTGATGCATATATAGCGAAGT
1 ATAAAGTATAAATTTTTAAGA-GGTTAAAATGGAAATTTACCATGTGATGC----ATAGCAAACT
* * * * ** *
43297824 TCTCATGTCTTATG--------A-TTC-TTTTTATATATTGAAACACGAATTTTGAGCCGAAGTC
61 TCTCGTGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTC
** *
43297879 CATTACA-AATTTAAAG
126 GGTTACAGAA-TCAAAG
* * * *
43297895 ATAAAGTATAAATTTTTAAGTGATTAAAATGGAAATTTACCATGTGATGCATATCAAACTTCTTG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * * *
43297960 TGTTTTATTACTTTTTT-ATTTCATTTTTAAATATTAAAATTTGAATTTTGAAGTGAAATCGGTT
66 TGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGTT
* *
43298024 ATAGAATCAAAT
130 ACAGAATCAAAG
* * * *
43298036 ATAAAGTATAAAATTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAGTTCTCG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * * * * * **
43298101 TGTCTTATTATTCTTTTTAATTTTATTTTTAAATATTGAAACTCGAATTTTGTGGC-AAATTTGT
66 TGTTTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGT
* * * * *
43298165 TCCGGAGTTATAG
129 TACAGAATCAAAG
* * * ** *
43298178 ATAAAGTATAAATTTTTATGAGGTTAAAATTGAAATTTACCATGTGATGCATAGGAAACTAATTG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * ** * *
43298243 TGTTTTATGCTTTTTTTTAAATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGC-AACATTG
66 TGTTTTATG--ATTTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAA-GTCG
43298307 GTTACAGAATCAAAG
127 GTTACAGAATCAAAG
* *
43298322 ATAAAGTATAAAGTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGCAAACTTCTCG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * * * *
43298387 TGTTTTATGATTTTTTAAATTTCATTTATAAATATTAAAATTTGAATTTCGAAGCCAAGTCAGTT
66 TGTTTTATGATTTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGTT
*
43298452 ACAGAATCAAAT
130 ACAGAATCAAAG
* * * * * *
43298464 ATAAAGAATAAATTTGTAAGAGGTTAAAATGGATACTTACAATGTGATGCATAGTGAAA-TTCTC
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-CAAACTTCTC
* * * * *
43298528 GTATCTTATGATTCCTTTTAATTTTATTTTTAAATATTCGAAACTCGAATTTTGAGGCGAAGGTC
65 GTGTTTTATGATT--TTTTAATTTCATTTTTAAATATT-AAAATTCGAATTTTGAGGCGAA-GTC
* ** * *
43298593 -ATTATGGAATTATAG
126 GGTTACAGAATCAAAG
* * * * ** *
43298608 ATAAAGTATAAACTTTTAAAAGGTTAAAATAGAAATTTACCATGTGATTG-ATAGAAAACTAATT
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA-TGCATAGCAAACTTCTC
** * * * *
43298672 GTGTTTTGCGCTTTTTTGAATTTTATTTTTAAATATTAAAATTTGAATTTCGAGGC-AATGTCGG
65 GTGTTTTATGATTTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAA-GTCGG
* *
43298736 TTAAAAAAAAATCAAAG
128 TT---ACAGAATCAAAG
* * * * * *
43298753 ATACAA-TAAAAAATTTTAAGAGGTTAAGATGGAAATTTATCATGTGATTCATAGCAAACATCTC
1 ATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTC
* * * ** * *
43298817 ATGTTCTATTGTTTTTTTTTTAATTTCAAATTTAGATATTAAAATTCGAATTTTGAGGCTAAGTC
65 GTGTTTTA-TG---ATTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTC
*
43298882 GGTTATAGAATCAAAG
126 GGTTACAGAATCAAAG
* * * * ** * *
43298898 ATAAATTATAAATTTTTAAGAGGCTAAAATGGAAATTTACAATGTAATGCATAGTGAAGTTCTCA
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * * * **
43298963 T-TTCTTATAATTGTTTTTAATTT-ATTTTTAAATACTGAAACTCGAATTTTGAGGCGAACTTTG
66 TGTT-TTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGG
* *
43299026 TGAC-GAAATTAAAG
128 TTACAG-AATCAAAG
* * *
43299040 ATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCTTGTGATGCATCG-AAAGCTTCTC
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAA-CTTCTC
* * **
43299104 GTGTTTTATGATTTTTTATAATTTCCTTATTAAATATTAAAATTCGAATTTCAAGGC-AATGTC-
65 GTGTTTTATGA-TTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAA-GTCG
43299167 GTTACAGAATCAAAG
127 GTTACAGAATCAAAG
* * * *
43299182 ATAAAGTATAAA-GTTTAAGAGGTTAAAACGGAAATTTATCATGTGATGCATAGCAAACTTC-CC
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * **
43299245 T-TTTTATGATTTTTTTAATTTTATTTTTAAATATTAAATTTCGAATTTCGAGGCGAAGTCAATT
66 TGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGTT
43299309 ACAGAATCAAAG
130 ACAGAATCAAAG
* * * * * *
43299321 ATAAAGTATAAATTTTTAAGAAGTTAAAATGAAAATTTACAATGTGATGCATAGCGAAGTTCTCT
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
** * * * * * * *
43299386 TGTCGTATGATTGTTTTAAATTT-ATATTTAAATATTGAAACTCAAATTTTAAGGTGAAGTCTAG
66 TGTTTTATGATT-TTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTC-GG
*
43299450 -TACAGAATTAAAG
128 TTACAGAATCAAAG
* ** * * * ** * *
43299463 GTAAAGTGGACATTTTTAAGTGGTTAAAATGGAAATTTACAATGTGATGCATAGTGAAGTTCGCG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * * * *
43299528 TGTCTTATGATTCTCTTTAATTTCATTTTTAAATACTGAAACTCGAATTTCGAGGCGAAGTGGGT
66 TGTTTTATGATT-T-TTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGT
*
43299593 TACAGAATTAAAG
129 TACAGAATCAAAG
* * ** *
43299606 ATAATGTATAGATTTTTAAGAGGTTTGAATGGAAATTTTCCATGTGATGCATAGCAAACTTCTCG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * * ** * *
43299671 TGTTTTATGATTATTTTTAATTCCATTTTCAAATATTAAAATTTGAATTTCAAGGCCAAGTCAGT
66 TGTTTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGT
**
43299736 TACATTATCAAAG
129 TACAGAATCAAAG
* * *** * *** *
43299749 AT-AAGTTATAAATTTTTAAGTGGTTAAAATTGAAATTTTTAATGTGATACATATTGAAGTTCTC
1 ATAAAG-TATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTC
* * * * * *
43299813 GTGTCTTCTGATTCTCTTTAATTTAATTTTTAAATATTGAAACTCGAATTTTGAGGC-AATGTCC
65 GTGTTTTATGATT-T-TTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAA-GTCG
* ** *
43299877 ATTATGGAATCGAAG
127 GTTACAGAATCAAAG
* * * *
43299892 ATAAAGTATAAATTCTTAAGAGGTTGAAATGGAAATTTACCAAGTGACGCATAGCAAACTTCTCG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
* * *
43299957 TGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGGCAAAGTCGGTT
66 TGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGTT
43300022 ACAGAATCAAAG
130 ACAGAATCAAAG
* *
43300034 ATAAAGTATAAATTTTTAAGAGTTTAAAATGGAAATTTACCATGTGATGTATAGCAAACTT
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTT
43300095 GTAACACCCC
Statistics
Matches: 2453, Mismatches: 501, Indels: 185
0.78 0.16 0.06
Matches are distributed among these distances:
131 17 0.01
134 2 0.00
135 85 0.03
136 3 0.00
137 1 0.00
138 37 0.02
139 43 0.02
140 54 0.02
141 296 0.12
142 852 0.35
143 579 0.24
144 277 0.11
145 157 0.06
146 3 0.00
148 39 0.02
149 8 0.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (141 bp):
ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCG
TGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCGAAGTCGGTTA
CAGAATCAAAG
Found at i:43297627 original size:286 final size:281
Alignment explanation
Indices: 43296906--43300093 Score: 2463
Period size: 286 Copynumber: 11.2 Consensus size: 281
43296896 AGGGTGTTAC
* * * ** * *
43296906 ATAAAGCATAAATTTTTAAGAGGTTAAAATGAAAATTTAAAATGTGATGCATAGCGAAGTGCTCG
1 ATAAAGTATAAATTTTTAAGA-GTTAAAATGGAAATTTACAATGTGATGCATAGAAAACT-CTTG
* * * * * * * *
43296971 -TGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCAAATTTTGAGGCAAAGTCCG
64 TTTTCTTAT-A--CTTTTTTATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGG
* * * * * *
43297035 TTACAAAATTATAGATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCATGTGATGCA
126 ATACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
* *
43297100 TAGCAAACTTCTTGTGTTTTTATGA-ATTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTT
191 TAGCAAACTTCTTGTG-TTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTT
* * *
43297164 GAGTCGAAGTCAGTTATAGAATCAAAG
255 GAGGCGAAGTCGGTTACAGAATCAAAG
** * * ** **
43297191 ATGCAGTATAAATTTTTAAGAAGTT-AGATGCAAATTTACAATGTGATTTATA-ACGAAGTTCTT
1 ATAAAGTATAAATTTTTAAG-AGTTAAAATGGAAATTTACAATGTGATGCATAGA--AAACTCTT
* * * * * * * *
43297254 G-TGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGCGGCTAATTCG
63 GTTTTCTTAT--A-CTTTTTTATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCG
* * * **
43297318 GTTATA-AG-GTCAAAGATAAAGTATAAAATTTTAAGAGGTCAAAATAAAAATTTACCATGTGAT
125 G--ATACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGAT
* * * *** * * *
43297381 GCGTAGCGAAGTTCTTACATCTTATGATTGTTTTTCAATTTCATTTTTAAATATTAAAACTCAAA
188 GCATAGCAAACTTCTTGTGTTTTATGATT-TTTTT-AATTTCATTTTTAAATATTAAAATTCGAA
* *
43297446 TTTTGAGTCGAAGTTC-GTTACGGAATCAAAG
251 TTTTGAGGCGAAG-TCGGTTACAGAATCAAAG
* * * *
43297477 ATAAAGTATTACTTTTTAAGTAGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTG
1 ATAAAGTATAAATTTTTAAG-AGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACT-CTTG
* * * **
43297542 TTTTTTTATACTTTTTTATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCAAAACCGGATA
64 TTTTCTTATACTTTTTTATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGGATA
* * *
43297607 TAGAATCAAAGATAAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGGGATGCATA
129 CAGAATCAAAGAT-AAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* *
43297672 GCAAACTTCTCGTGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTTGAG
193 GCAAACTTCTTGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAG
* *
43297736 GCCAAGTCGGCTACAGAATCAAAG
258 GCGAAGTCGGTTACAGAATCAAAG
* * * * ***
43297760 ATAAAGTATAAATTTTTAA-ATGATTAAAATGGAAATTTACAATCTGATGCATATATAGC-GAAG
1 ATAAAGTATAAATTTTTAAGA-G-TTAAAATGGAAATTTACAATGTGATGCATAGAAAACTCTTG
* * * * * * * * * * * * *
43297823 TTCTCATGT-C-TTATGA--TTCTTTTTATATATTGAAACACGAATTTTGAGCCGAAGTC-CATT
64 TTTTCTTATACTTTTTTATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGGA-T
* * *
43297883 ACA-AATTTAAAGATAAAGTATAAATTTTTAAGTGATTAAAATGGAAATTTACCATGTGATGCAT
128 ACAGAA-TCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* * * *
43297947 ATCAAACTTCTTGTGTTTTATTACTTTTTT-ATTTCATTTTTAAATATTAAAATTTGAATTTTGA
192 AGCAAACTTCTTGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGA
* * * * *
43298011 AGTGAAATCGGTTATAGAATCAAAT
257 GGCGAAGTCGGTTACAGAATCAAAG
* ** *
43298036 ATAAAGTATAAAATTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAGTTCTCG
1 ATAAAGTATAAATTTTTAAGA-GTTAAAATGGAAATTTACAATGTGATGCATA--GAA-AACTCT
* * * * * * * ** *
43298101 TGTCTTATTATTCTTTTTAATTTTATTTTTAAATATTGAAACTCGAATTTTGTGGCAAA-TTTGT
62 TGTTTTCTTATACTTTTTTATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGGA
* * * * * * *
43298165 TCCGGAGTTATAGATAAAGTATAAATTTTTATGAGGTTAAAATTGAAATTTACCATGTGATGCAT
127 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* ** * * *
43298230 AGGAAACTAATTGTGTTTTATGCTTTTTTTTAAATTTTATTTTTAAATATTAAAATTCGAATTTC
192 AGCAAACTTCTTGTGTTTTATG-ATTTTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTT
* * *
43298295 AAGGC-AACATTGGTTACAGAATCAAAG
255 GAGGCGAA-GTCGGTTACAGAATCAAAG
* * *
43298322 ATAAAGTATAAAGTTTTAAGAGGTTAAAATGGAAATTTATC-ATGTGATGCATAGCAAACTTCTC
1 ATAAAGTATAAATTTTTAAGA-GTTAAAATGGAAATTTA-CAATGTGATGCATAGAAAAC-TCTT
* * * * * * * *
43298386 GTGTT-TTATGA-TTTTTTAAATTTCATTTATAAATATTAAAATTTGAATTTCGAAGCCAAGTCA
63 GTTTTCTTAT-ACTTTTTT--ATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCG
* * * * * * *
43298449 GTTACAGAATCAAATATAAAGAATAAATTTGTAAGAGGTTAAAATGGATACTTACAATGTGATGC
125 GATACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* * * * * * * *
43298514 ATAGTGAAA-TTCTCGTATCTTATGATTCCTTTTAATTTTATTTTTAAATATTCGAAACTCGAAT
190 ATAG-CAAACTTCTTGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATT-AAAATTCGAAT
* ** * *
43298578 TTTGAGGCGAAGGTC-ATTATGGAATTATAG
252 TTTGAGGCGAA-GTCGGTTACAGAATCAAAG
* * * * *
43298608 ATAAAGTATAAACTTTTAAAAGGTTAAAATAGAAATTTACCATGTGATTG-ATAGAAAACTAATT
1 ATAAAGTATAAATTTTTAAGA-GTTAAAATGGAAATTTACAATGTGA-TGCATAGAAAACT-CTT
* *** * * *
43298672 GTGTT-TTGCGCTTTTTTGAATTTTATTTTTAAATATTAAAATTTGAATTTCGAGGCAATGTCGG
63 GTTTTCTTATACTTTTTT--ATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGG
* * * * * * *
43298736 TTAAAAAAAAATCAAAGATACAA-TAAAAAATTTTAAGAGGTTAAGATGGAAATTTATCATGTGA
126 ---ATACAGAATCAAAGATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA
* * ** * * ** *
43298800 TTCATAGCAAACATCTCATGTTCTATTGTTTTTTTTTTAATTTCAAATTTAGATATTAAAATTCG
187 TGCATAGCAAACTTCTTGTGTTTTA-TG--ATTTTTTTAATTTCATTTTTAAATATTAAAATTCG
* *
43298865 AATTTTGAGGCTAAGTCGGTTATAGAATCAAAG
249 AATTTTGAGGCGAAGTCGGTTACAGAATCAAAG
* * * ** * *
43298898 ATAAATTATAAATTTTTAAGAGGCTAAAATGGAAATTTACAATGTAATGCATAGTGAAGT-TCTC
1 ATAAAGTATAAATTTTTAAGA-GTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTCT-TG
* * * * * * * * **
43298962 ATTTCTTATAATTGTTTTTAATTTATTTTTAAATACTGAAACTCGAATTTTGAGGCGAACTTTG-
64 TTTTCTTAT-ACT-TTTTTATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGGA
* * *
43299026 TGAC-GAAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCTTGTGATGC
127 T-ACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* * * *
43299090 ATCG-AAAGCTTCTCGTGTTTTATGATTTTTTATAATTTCCTTATTAAATATTAAAATTCGAATT
190 ATAGCAAA-CTTCTTGTGTTTTATGATTTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATT
**
43299154 TCAAGGC-AATGTC-GTTACAGAATCAAAG
253 TTGAGGCGAA-GTCGGTTACAGAATCAAAG
* * * **
43299182 ATAAAGTATAAA-GTTTAAGAGGTTAAAACGGAAATTTATC-ATGTGATGCATAGCAAACT-TCC
1 ATAAAGTATAAATTTTTAAGA-GTTAAAATGGAAATTTA-CAATGTGATGCATAGAAAACTCTTG
* * ** * *
43299244 CTTT-TTATGATTTTTTTAATTTTATTTTTAAATATTAAATTTCGAATTTCGAGGCGAAGTC-AA
64 TTTTCTTAT-ACTTTTTT-ATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGGA
* * *
43299307 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAAGTTAAAATGAAAATTTACAATGTGATGCA
127 -TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
* * ** * * * * *
43299372 TAGCGAAGTTCTCT-TGTCGTATGATTGTTTTAAATTT-ATATTTAAATATTGAAACTCAAATTT
191 TAGCAAACTTCT-TGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTT
* * * *
43299435 TAAGGTGAAGTCTAG-TACAGAATTAAAG
254 TGAGGCGAAGTC-GGTTACAGAATCAAAG
* ** * * ** * *
43299463 GTAAAGTGGACATTTTTAAGTGGTTAAAATGGAAATTTACAATGTGATGCATAGTGAAGT-TCGC
1 ATAAAGTATAAATTTTTAAG-AGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTCTTG-
* * * * * * *
43299527 GTGTCTTATGA-TTCTCTTTAATTTCATTTTTAAATACTGAAACTCGAATTTCGAGGCGAAGTGG
64 TTTTCTTAT-ACTT-T-TTT-ATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCG
* * * * ** *
43299591 GTTACAGAATTAAAGATAATGTATAGATTTTTAAGAGGTTTGAATGGAAATTTTCCATGTGATGC
125 GATACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* * * *
43299656 ATAGCAAACTTCTCGTGTTTTATGATTATTTTTAATTCCATTTTCAAATATTAAAATTTGAATTT
190 ATAGCAAACTTCTTGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTT
** * * **
43299721 CAAGGCCAAGTCAGTTACATTATCAAAG
254 TGAGGCGAAGTCGGTTACAGAATCAAAG
* * ** * **
43299749 AT-AAGTTATAAATTTTTAAGTGGTTAAAATTGAAATTTTTAATGTGATACATATTGAAGTTCTC
1 ATAAAG-TATAAATTTTTAAG-AGTTAAAATGGAAATTTACAATGTGATGCATA--GAA-AACTC
* * * * * * * * * * *
43299813 GTGTCTTCTGATTCTCTTTAATTTAATTTTTAAATATTGAAACTCGAATTTTGAGGCAATGTC-C
61 TTGTTTTCTTATACTTTTTTATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGG
** * * * * *
43299877 ATTATGGAATCGAAGATAAAGTATAAATTCTTAAGAGGTTGAAATGGAAATTTACCAAGTGACGC
126 A-TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* * *
43299942 ATAGCAAACTTCTCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTC
190 ATAGCAAACTTCTTGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTT
*
43300007 GAGGCAAAGTCGGTTACAGAATCAAAG
255 GAGGCGAAGTCGGTTACAGAATCAAAG
* * *
43300034 ATAAAGTATAAATTTTTAAGAGTTTAAAATGGAAATTTACCATGTGATGTATAGCAAACT
1 ATAAAGTATAAATTTTTAAGAG-TTAAAATGGAAATTTACAATGTGATGCATAGAAAACT
43300094 TGTAACACCC
Statistics
Matches: 2310, Mismatches: 490, Indels: 209
0.77 0.16 0.07
Matches are distributed among these distances:
276 168 0.07
277 47 0.02
278 1 0.00
279 5 0.00
280 38 0.02
281 149 0.06
282 62 0.03
283 236 0.10
284 232 0.10
285 398 0.17
286 642 0.28
287 101 0.04
288 13 0.01
289 73 0.03
290 118 0.05
291 20 0.01
292 7 0.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (281 bp):
ATAAAGTATAAATTTTTAAGAGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTCTTGTT
TTCTTATACTTTTTTATTTTATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAGTCGGATACA
GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCA
AACTTCTTGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCG
AAGTCGGTTACAGAATCAAAG
Found at i:43298513 original size:428 final size:425
Alignment explanation
Indices: 43296906--43300094 Score: 3053
Period size: 428 Copynumber: 7.5 Consensus size: 425
43296896 AGGGTGTTAC
* * ** * *
43296906 ATAAAGCATAAATTTTTAAGAGGTTAAAATGAAAATTTAAAATGTGATGCATAGCG-AAGTGCTC
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-GAAACTTCTC
* * * * *
43296970 GTGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCAAATTTTGAGGCAAAGTCCG
65 GTGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGCAAA-TCCG
* * * * *
43297035 TTACAAAATTATAGATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCATGTGATGCA
129 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
* * ** *
43297100 TAGCAAACTTCTTGTGTTTTTATGAATTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTTG
194 TAGCAAACTTCTCGTG-TTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCG
** * * *
43297165 -AGTCGAAGTCAGTTATAGAATCAAAGATGCAGTATAAATTTTTAAGAAGTT-AGATGCAAATTT
258 AAG-CGAAGTCAGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTT
** * * * * *
43297228 ACAATGTGATTTATAACGAAGTTCTTGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTA
322 ACAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTTATTTTTAAATATTG
* * * * * * *
43297293 AAATTTGAATTTCGCGGCTAATTCGGTTA--TAAGGTCAAAG
387 AAACTCGAATTTTGAGGCAAATTC-GTTACGGAA--TTAAAG
* * ** * * *
43297333 ATAAAGTATAAAATTTTAAGAGGTCAAAATAAAAATTTACCATGTGATGCGTAGCG-AAGTTCTT
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-GAAACTTCTC
*** * * * * * *
43297397 ACATCTTATGATTGTTTTTCAATTTCATTTTTAAATATTAAAACTCAAATTTTGAGTCGAAGTTC
65 GTGTCTTATGATT-TTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGC-AAATCC
* * *
43297462 GTTACGGAATCAAAGATAAAGTATTACTTTTTAAGTA-GTTAAAATGGAAATTTACCATGTGATG
128 GTTACAGAATCAAAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACCATGTGATG
* ** * * * *
43297526 CATAGAAAACTAATTGTTTTTTTAT-ACTTTTTT-ATTTTATTTTTAAATATTAAAATTCGAATT
192 CATAGCAAACTTCTCG-TGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATT
* ** * *
43297589 TC-AAGGCAAAACCGGATATAGAATCAAAGATAAAAGTATAAATTTTTAAGAGGTTAAAATGGAA
255 TCGAA-GCGAAGTCAGTTATAGAATCAAAGAT-AAAGTATAAATTTTTAAGAGGTTAAAATGGAA
* * * * *
43297653 ATTTATC-ATGGGATGCATAGCAAACTTCTCGTGTTTTATGA-T-TTTTTAATTTCATTTTTAAA
318 ATTTA-CAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTTATTTTTAAA
* * * * * * * *
43297715 TATTAAAATTTGAATTTTGAGGCCAAGTCGGCTACAGAATCAAAG
382 TATTGAAACTCGAATTTTGAGGCAAATTC-GTTACGGAATTAAAG
* * * * * **
43297760 ATAAAGTATAAATTTTTAA-ATGATTAAAATGGAAATTTACAATCTGATGCATA-TATAGC--GA
1 ATAAAGTATAAATTTTTAAGA-GGTTAAAATGGAAATTTACCATGTGATGCATAGGA-AACTTCT
* * * * * * * * * * *
43297821 AGT-TCTCATG---TCTTATGA-TTC-TTTTTATATATTGAAACACGAATTTTGAGCCGAAGTCC
64 CGTGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGC-AAATCC
* * * *
43297880 ATTACA-AATTTAAAGATAAAGTATAAATTTTTAAGTGATTAAAATGGAAATTTACCATGTGATG
128 GTTACAGAA-TCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * *
43297944 CATATCAAACTTCTTGTGTTTTATTACTTTTTT-ATTTCATTTTTAAATATTAAAATTTGAATTT
192 CATAGCAAACTTCTCGTGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTT
* * * * * *
43298008 TGAAGTGAAATCGGTTATAGAATCAAATATAAAGTATAAAATTTTAAGAGGTTAAAATGGAAATT
256 CGAAGCGAAGTCAGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATT
*
43298073 TACAATGTGATGCATAGCGAAGTTCTCGTGTCTTATTATTCTTTTTAATTTTATTTTTAAATATT
321 TACAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTTATTTTTAAATATT
* * * * *
43298138 GAAACTCGAATTTTGTGGCAAATTTGTTCCGGAGTTATAG
386 GAAACTCGAATTTTGAGGCAAATTCGTTACGGAATTAAAG
* * ** *
43298178 ATAAAGTATAAATTTTTATGAGGTTAAAATTGAAATTTACCATGTGATGCATAGGAAACTAATTG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGGAAACTTCTCG
* * * * * **
43298243 TGTTTTATGCTTTTTTTTAAATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCAACATTGG
66 TGTCTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGCAA-ATCCG
* *
43298308 TTACAGAATCAAAGATAAAGTATAAAGTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCA
129 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
*
43298373 TAGCAAACTTCTCGTGTTTTATGATTTTTTAAATTTCATTTATAAATATTAAAATTTGAATTTCG
194 TAGCAAACTTCTCGTGTTTTATGATTTTTT-AATTTCATTTTTAAATATTAAAATTTGAATTTCG
* * * * * * *
43298438 AAGCCAAGTCAGTTACAGAATCAAATATAAAGAATAAATTTGTAAGAGGTTAAAATGGATACTTA
258 AAGCGAAGTCAGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA
* * * *
43298503 CAATGTGATGCATAGTGAAATTCTCGTATCTTATGATTCCTTTTAATTTTATTTTTAAATATTCG
323 CAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTTATTTTTAAATATT-G
** * * *
43298568 AAACTCGAATTTTGAGGCGAAGGTCATTATGGAATTATAG
387 AAACTCGAATTTTGAGGC-AAATTCGTTACGGAATTAAAG
* * * * ** *
43298608 ATAAAGTATAAACTTTTAAAAGGTTAAAATAGAAATTTACCATGTGATTG-ATAGAAAACTAATT
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA-TGCATAGGAAACTTCTC
** * * * * * *
43298672 GTGT-TT-TGCGCTTTTTTGAATTTTATTTTTAAATATTAAAATTTGAATTTCGAGGCAATGTCG
65 GTGTCTTATG-ATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGCAA-ATCC
* * * * * *
43298735 GTTAAAAAAAAATCAAAGATACAA-TAAAAAATTTTAAGAGGTTAAGATGGAAATTTATCATGTG
128 GTT---ACAGAATCAAAGATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTG
* * * * * ** * *
43298799 ATTCATAGCAAACATCTCATGTTCTATTGTTTTTTTTTTAATTTCAAATTTAGATATTAAAATTC
189 ATGCATAGCAAACTTCTCGTGTTTTA-TG---ATTTTTTAATTTCATTTTTAAATATTAAAATTT
* * * * * *
43298864 GAATTTTGAGGCTAAGTCGGTTATAGAATCAAAGATAAATTATAAATTTTTAAGAGGCTAAAATG
250 GAATTTCGAAGCGAAGTCAGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATG
* * * * * *
43298929 GAAATTTACAATGTAATGCATAGTGAAGTTCTCATTTCTTATAATTGTTTTTAA-TTTATTTTTA
315 GAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTTATTTTTA
* * * * *
43298993 AATACTGAAACTCGAATTTTGAGGCGAACTTTGTGACGAAATTAAAG
380 AATATTGAAACTCGAATTTTGAGGC-AAATTCGTTACGGAATTAAAG
* * *
43299040 ATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCTTGTGATGCAT-CGAAAGCTTCTC
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGGAAA-CTTCTC
* * * * * * *
43299104 GTGTTTTATGATTTTTTATAATTTCCTTATTAAATATTAAAATTCGAATTTCAAGGC-AATGTCG
65 GTGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGCAAAT-CCG
* * *
43299168 TTACAGAATCAAAGATAAAGTATAAA-GTTTAAGAGGTTAAAACGGAAATTTATCATGTGATGCA
129 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
* *
43299232 TAGCAAACTTC-CCT-TTTTATGATTTTTTTAATTTTATTTTTAAATATT-AAATTTCGAATTTC
194 TAGCAAACTTCTCGTGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTT-GAATTTC
* * * * *
43299294 GAGGCGAAGTCAATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAAGTTAAAATGAAAATTT
257 GAAGCGAAGTCAGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTT
* * * * *
43299359 ACAATGTGATGCATAGCGAAGTTCTCTTGTCGTATGATT-GTTTTAAATTTATATTTAAATATTG
322 ACAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTTATTTTTAAATATTG
* * ** * *
43299423 AAACTCAAATTTTAAGGTGAAGTC-TAGTACAGAATTAAAG
387 AAACTCGAATTTTGAGGCAAATTCGT--TACGGAATTAAAG
* ** * * * * *
43299463 GTAAAGTGGACATTTTTAAGTGGTTAAAATGGAAATTTACAATGTGATGCATAGTG-AAGTTCGC
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-GAAACTTCTC
* * * * * **
43299527 GTGTCTTATGATTCTCTTTAATTTCATTTTTAAATACTGAAACTCGAATTTCGAGGCGAAGTGGG
65 GTGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGC-AAATCCG
* * * ** *
43299592 TTACAGAATTAAAGATAATGTATAGATTTTTAAGAGGTTTGAATGGAAATTTTCCATGTGATGCA
129 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
* *
43299657 TAGCAAACTTCTCGTGTTTTATGATTATTTTTAATTCCATTTTCAAATATTAAAATTTGAATTTC
194 TAGCAAACTTCTCGTGTTTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC
* * ** * *
43299722 -AAGGCCAAGTCAGTTACATTATCAAAGAT-AAGTTATAAATTTTTAAGTGGTTAAAATTGAAAT
257 GAA-GCGAAGTCAGTTATAGAATCAAAGATAAAG-TATAAATTTTTAAGAGGTTAAAATGGAAAT
** * ** * * *
43299785 TTTTAATGTGATACATATTGAAGTTCTCGTGTCTTCTGATTCTCTTTAATTTAATTTTTAAATAT
320 TTACAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTTATTTTTAAATAT
* * **
43299850 TGAAACTCGAATTTTGAGGC-AATGTCCATTATGGAATCGAAG
385 TGAAACTCGAATTTTGAGGCAAAT-T-CGTTACGGAATTAAAG
* * * * *
43299892 ATAAAGTATAAATTCTTAAGAGGTTGAAATGGAAATTTACCAAGTGACGCATAGCAAACTTCTCG
1 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGGAAACTTCTCG
* * * *
43299957 TGTTTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGGCAAAGTCGGT
66 TGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGCAAA-TCCGT
* *
43300021 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGTTTAAAATGGAAATTTACCATGTGATGTAT
130 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
43300086 AGCAAACTT
195 AGCAAACTT
43300095 GTAACACCCC
Statistics
Matches: 2282, Mismatches: 403, Indels: 153
0.80 0.14 0.05
Matches are distributed among these distances:
416 1 0.00
417 74 0.03
418 213 0.09
419 48 0.02
420 6 0.00
421 6 0.00
422 13 0.01
423 254 0.11
424 36 0.02
425 49 0.02
426 17 0.01
427 336 0.15
428 598 0.26
429 198 0.09
430 76 0.03
431 81 0.04
432 92 0.04
433 55 0.02
434 123 0.05
435 6 0.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (425 bp):
ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGGAAACTTCTCG
TGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTCGAGGCAAATCCGTT
ACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
GCAAACTTCTCGTGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAAG
CGAAGTCAGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAA
TGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTTATTTTTAAATATTGAAAC
TCGAATTTTGAGGCAAATTCGTTACGGAATTAAAG
Found at i:43300429 original size:22 final size:22
Alignment explanation
Indices: 43300404--43300445 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
43300394 AAAACAGAGA
*
43300404 ATATCATATACAGATGCAGAAC
1 ATATCAGATACAGATGCAGAAC
*
43300426 ATATCAGATACAGGTGCAGA
1 ATATCAGATACAGATGCAGA
43300446 TTCCTACCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (22 bp):
ATATCAGATACAGATGCAGAAC
Found at i:43308134 original size:21 final size:21
Alignment explanation
Indices: 43308099--43308202 Score: 81
Period size: 22 Copynumber: 4.9 Consensus size: 21
43308089 AAATCTAAGT
43308099 ATAAGAATAATAAAATAAATAA
1 ATAA-AATAATAAAATAAATAA
* * *
43308121 ATAAAATAAGAAAATAGATTA
1 ATAAAATAATAAAATAAATAA
*
43308142 GT--AA-AATAAAATAAATAA
1 ATAAAATAATAAAATAAATAA
*
43308160 TATAAAAATAATAATAATAAAGAA
1 -AT-AAAATAATAA-AATAAATAA
43308184 ATAAAGA-AATAAAAATAAA
1 ATAAA-ATAAT-AAAATAAA
43308203 AGATAATAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.17
19 3 0.05
21 15 0.23
22 18 0.28
23 10 0.15
24 8 0.12
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (21 bp):
ATAAAATAATAAAATAAATAA
Found at i:43308177 original size:17 final size:17
Alignment explanation
Indices: 43308155--43308216 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
43308145 AAATAAAATA
43308155 AATAATATAA-AAATAAT
1 AATAATA-AAGAAATAAT
43308172 AATAATAAAGAAATAA-
1 AATAATAAAGAAATAAT
*
43308188 AGA-AAT-AA-AAATAAA
1 A-ATAATAAAGAAATAAT
43308203 AGATAATAAAGAAA
1 A-ATAATAAAGAAA
43308217 AGGGTAAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
14 6 0.15
15 5 0.13
16 9 0.23
17 16 0.41
18 3 0.08
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AATAATAAAGAAATAAT
Found at i:43308199 original size:14 final size:14
Alignment explanation
Indices: 43308145--43308212 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 14
43308135 TAGATTAGTA
*
43308145 AAAT-AAAATAAAT
1 AAATAAAAATAAAG
43308158 AATATAAAAATAATA-
1 AA-ATAAAAATAA-AG
43308173 ATAATAAAGAAATAAAG
1 A-AAT-AA-AAATAAAG
43308190 AAATAAAAATAAAAG
1 AAATAAAAAT-AAAG
43308205 ATAATAAA
1 A-AATAAA
43308213 GAAAAGGGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
13 2 0.04
14 6 0.13
15 17 0.37
16 14 0.30
17 7 0.15
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (14 bp):
AAATAAAAATAAAG
Found at i:43308209 original size:32 final size:32
Alignment explanation
Indices: 43308150--43308216 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
43308140 TAGTAAAATA
* *
43308150 AAATAAATAATATAAAAATAATAATAATAAAG
1 AAATAAAGAATATAAAAATAAAAATAATAAAG
43308182 AAATAAAGAA-ATAAAAATAAAAGATAATAAAG
1 AAATAAAGAATATAAAAATAAAA-ATAATAAAG
43308214 AAA
1 AAA
43308217 AGGGTAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 11 0.34
32 21 0.66
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (32 bp):
AAATAAAGAATATAAAAATAAAAATAATAAAG
Found at i:43308697 original size:63 final size:64
Alignment explanation
Indices: 43308540--43308690 Score: 189
Period size: 64 Copynumber: 2.4 Consensus size: 64
43308530 CGCCTCTCTC
* * * * * *
43308540 ACGCCTATGTGATATCCCACACGCCTGTGT-AGCCCGGCTGTGTCTGATCTCCATTGCTTCTCCC
1 ACGCCTATGTGAGATCCCACACGCCCGTGTGA-CTCGACCGTGTCTGATCTCCATTGCTTCTCCA
* * *
43308604 ATGCCTATGTGAGATCCCACACGCCCGTGTGACTCGACCGTGTGTGATCTCCTTTGCTTCTCCA
1 ACGCCTATGTGAGATCCCACACGCCCGTGTGACTCGACCGTGTCTGATCTCCATTGCTTCTCCA
*
43308668 ACGCC-ATGTGAGATCCCTCACGC
1 ACGCCTATGTGAGATCCCACACGC
43308691 TGGTGTGGCT
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
63 17 0.23
64 57 0.76
65 1 0.01
ACGTcount: A:0.16, C:0.35, G:0.21, T:0.28
Consensus pattern (64 bp):
ACGCCTATGTGAGATCCCACACGCCCGTGTGACTCGACCGTGTCTGATCTCCATTGCTTCTCCA
Found at i:43308709 original size:63 final size:62
Alignment explanation
Indices: 43308511--43308709 Score: 186
Period size: 64 Copynumber: 3.1 Consensus size: 62
43308501 CATGTGTCCA
* * * * * * *
43308511 GGTCGTGTGTGTTTTCCTTCGCCTCTCTCACGCCTATGTGATATCCCACACGCCTGTGTAGCCC
1 GGTCGTGTGTGATCTCCTTTGCTTCTC-CACGCCTATGTGAGATCCCACACG-CTGTGTGGCTC
* * * * *
43308575 GG-CTGTGTCTGATCTCCATTGCTTCTCCCATGCCTATGTGAGATCCCACACGCCCGTGTGACTC
1 GGTC-GTGTGTGATCTCCTTTGCTTCT-CCACGCCTATGTGAGATCCCACACG-CTGTGTGGCTC
** *
43308639 GACCGTGTGTGATCTCCTTTGCTTCTCCAACGCC-ATGTGAGATCCCTCACGCTGGTGTGGCTC
1 GGTCGTGTGTGATCTCCTTTGCTTCTCC-ACGCCTATGTGAGATCCCACACGCT-GTGTGGCTC
43308702 GGTCGTGT
1 GGTCGTGT
43308710 CTCTTACACA
Statistics
Matches: 109, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
62 1 0.01
63 33 0.30
64 73 0.67
65 2 0.02
ACGTcount: A:0.12, C:0.33, G:0.24, T:0.31
Consensus pattern (62 bp):
GGTCGTGTGTGATCTCCTTTGCTTCTCCACGCCTATGTGAGATCCCACACGCTGTGTGGCTC
Found at i:43323237 original size:4 final size:4
Alignment explanation
Indices: 43323228--43323267 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
43323218 ATATTGTATG
43323228 AATT AATT AATT AATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT AATT
43323268 TGTGATTCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
AATT
Found at i:43327196 original size:19 final size:19
Alignment explanation
Indices: 43327172--43327210 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
43327162 AAGCTTACAC
*
43327172 TCGGAACTTAGGATAGGGG
1 TCGGAACATAGGATAGGGG
43327191 TCGGAACATAGGATAGGGG
1 TCGGAACATAGGATAGGGG
43327210 T
1 T
43327211 TTAGGCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.41, T:0.21
Consensus pattern (19 bp):
TCGGAACATAGGATAGGGG
Found at i:43336626 original size:142 final size:140
Alignment explanation
Indices: 43336115--43339039 Score: 2569
Period size: 142 Copynumber: 20.5 Consensus size: 140
43336105 TACACCTCCC
* * * *
43336115 ATTTTTTATAATTTCATTTTTTAATATTAAAATTTGAATTTCAAGGCAACGTTGGTTACAGAATC
1 ATTTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTCGGTTACAGAATC
* * *
43336180 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTATC-ATGTGATGCATAGCAAAGT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATAGAAAACT
43336244 TCTCGTGTTTTATG
128 TCTCGTGTTTT-TG
* * ** * *
43336258 ATTTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAATTTCGAGGCCAAGTCATTTATAGAAC
1 A--TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTCGGTTACAGAAT
* * ** *
43336323 CAGAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATGGCGAAGT
63 CAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACT
* * *
43336388 TCACGTCTGTTATG
128 TCTCGTGT-TTTTG
* * * * * * * *
43336402 ATTGTTCTCAATTTCATTTTTAAATATTGAAACTCGAATTTTGATGCAAAGTCCGTTACAGAATT
1 ATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTCGGTTACAGAATC
* * * * *
43336467 AAAGATAAAATATAAATTTTTAAGTGGTTAAAATGGAAATATACAATGTGATACATAGAAAACTA
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTT
* *
43336532 ATTGTGTTTTTCG
129 CTCGTGTTTTT-G
* * * * *
43336545 CTTTTTTTAATTTTATTTTTAAAAATTAAAATTCGAAATTCGAGGCAACGTCGGTTACAAAATCA
1 ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTCGGTTACAGAATCA
* * *
43336610 AAGATAGAGTATAAATTTTTAAGAGGTTAAGATGGAAAGTTATC-ATGTGATGCATAGAAAACTT
65 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATAGAAAACTT
* *
43336674 ATTGTGTTTTATG
129 CTCGTGTTTT-TG
* * * ** *
43336687 ATTTTTTTTTAATTTCATTTTTAGATGTTAAAATTCGAATGTCGAGGCAAAGTCAATTACATAAT
1 A--TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTCGGTTACAGAAT
* * * * *
43336752 CAAAGATAAAGTATAAATTTTTAAGAGATTAAAATAGAAATTTACAATGTGATACATA-ACGAAG
63 CAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGA-AAAC
* *
43336816 TTCCCGTGTCTTATG
127 TTCTCGTGT-TTTTG
* * * **
43336831 ATTGTTTTTAATAT-ATTTTTAAATATTGAAACA-T-GAATTTTGAGGCGAACTCCATTAC-GCA
1 ATT-TTTTTAATTTCATTTTTAAATATT-AAA-ATTCGAATTTCGAGGC-AAGTCGGTTACAG-A
* * * * **
43336892 ATTAAAGATAAAGTATAAATTTGTAAGCGGTT-AAATGGAAATTCACCTTGTGATGCATAGAAAA
61 ATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAA
43336956 CTTCTCGTGTTTTATG
126 CTTCTCGTGTTTT-TG
* * * * *
43336972 ATTTTTTATAATTTTATTTTTAAATATTAAAATTAGAACTTCGAGGCAATGTTGGTTTCAGAATC
1 ATTTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTCGGTTACAGAATC
*
43337037 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTATC-ATGTGATGCATAGAAAACT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATAGAAAACT
43337101 TCTCGTGTTTTATG
128 TCTCGTGTTTT-TG
* * * *
43337115 ATTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTCCAAGGCCAAGTTC-ATTACAGAATC
1 ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAG-TCGGTTACAGAATC
* * * * ** *
43337179 AAAGATAAAGTATAAATTTTTAAGACGTTAAAATGGATATTTACCATGTGATGCTTAGCGAAGTT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTT
* *
43337244 CTCGTGTCTTATA
129 CTCGTGT-TTTTG
* * * * * * * * * *
43337257 ATCTTTTGACTTTCATTTTTAAATATTGAAACTCGAATTTTGAGTCAAAGTCCGTTACGGAATTA
1 ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTCGGTTACAGAATCA
* * * * * *
43337322 TAGATAAGAATATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATACATAGAAAACTA
65 AAGATAA-AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTT
* *
43337387 ATTGTG-TTTTG
129 CTCGTGTTTTTG
* * * * * * * *
43337398 CACTTTTTTAATTTTACTTTTAAATATTAAAATTCGAGTTTCGAGACAACGTCAGTTACAAAATA
1 -ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTCGGTTACAGAATC
* ** *
43337463 AAAGTTAAAGTATAAATTTTTAAGAGGTTATGATGGAAATTTATC-ATGTGATGCATAGCAAACT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATAGAAAACT
* *
43337527 TTTCGTATTTTATG
128 TCTCGTGTTTT-TG
* * * * * * *
43337541 ATTTTTTAAATTTCATTTTTAAATATTGAATTTTGAATTTTGAGGCAAATTCGGATA-ATGAATC
1 ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTCGGTTACA-GAATC
* * *
43337605 AAAGATAAATTATACATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAA-T
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAG-AAAACT
* **
43337669 TCTCATGTCTTACG
128 TCTCGTGT-TTTTG
* * * * * * * ** **
43337683 ATTGCTTTTAATTT-ACTTTTAAATATTGAAACTCAAATTTTGAGGTGAAGTCTATTATGGAAT-
1 ATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTCGGTTACAGAATC
* * * * * ** *
43337746 TAAGATAAAGTGTAAATTTCTAA-ATGGTTAAAATGGAAATTTTCAATATGATGCATAGCGAAGT
64 AAAGATAAAGTATAAATTTTTAAGA-GGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACT
* **
43337810 TCTTGTGTCTAATG
128 TCTCGTGT-TTTTG
* * * * ** **
43337824 ATTCTCTTTAATTTCATTTTTAAATATTGAAACTCGAATTTCGAGGCCAATTAAGTTTTAGAATC
1 ATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTCGGTTACAGAATC
* * *
43337889 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTTATAATGTGATGCATA-ACAAAG
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAA-TTTACAATGTGATGCATAGA-AAAC
* * *
43337953 TTTTCGTATCTTATG
127 TTCTCGTGT-TTTTG
* * * * * * ** ** *
43337968 ATTGTTTTTAA-TT-ATTTTGAATTATTGAAACTCGAATTTTGAGGTGAAGTCCATTATGGAATT
1 ATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTCGGTTACAGAATC
** * * * * * *
43338031 AAAGATAAAGTGGAAATTTCTAAGTGGATAAAATGGAAAATTT-CAATGTGATGCGTAGCAAAGT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGG-AAATTTACAATGTGATGCATAGAAAACT
*
43338095 TCTCGTGTCTTATG
128 TCTCGTGT-TTTTG
* * * * * * * *
43338109 ATTCTCTTTAATTTCATTTTTAAATTTTGAAACTCGAATTTCAAGGCGAAGTCAGCTACAGAATT
1 ATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTCGGTTACAGAATC
* * ** *
43338174 AAAGATAAAGTATAAATTTTTAAGAGG-TAAAATGGAAATTTACCATATGATGCATATCAAAGTT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTT
43338238 CTCGTGTTTTATG
129 CTCGTGTTTT-TG
* * * * * *
43338251 AGTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCAAGACCAAGTCGATTATAGAATCA
1 ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAG-GCAAGTCGGTTACAGAATCA
* * ** * ** *
43338316 AAGATAAAGTATAAATTTGTAAGAGGTTAAAATGGATATTTACAATGCAATGCGTAGCGAATTTC
65 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTTC
*
43338381 TCGTGTCTTATG
130 TCGTGT-TTTTG
* * * * *
43338393 ATTCTTTTTAATTTCATTTTTAAATACTGAAACTCGAATTTTGAGGCGAAGTCCGTTACAGAATC
1 ATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTCGGTTACAGAATC
* * *
43338458 AAAGATAAAGTATAAATTTTTTATAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAA-T
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAG-AAAACT
*
43338522 TCTCGTATTTTATG
128 TCTCGTGTTTT-TG
* *
43338536 ATTTTTTTAAAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCGAAGTCGGTTATAGAAT
1 ATTTTTTT--AATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTCGGTTACAGAAT
* * * ** *
43338601 CAAAGATAAAGTATAAATTTTTAAGAGGCTAAAATGGAAATTTACCATATGATGCATAGTGAAGT
63 CAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACT
*
43338666 TCTCGTGTCTTATG
128 TCTCGTGT-TTTTG
* * * * * * *
43338680 ATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGTCGAAGTCTGTTACTGAATT
1 ATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTCGGTTACAGAATC
* *
43338745 ATAA-ATAATA-TATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAC
64 A-AAGATAA-AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAAC
* *
43338808 TAT-TTGTGTTTTGCG
127 T-TCTCGTGTTTT-TG
** * * * * * * *
43338823 CCTTTTTTAATTTTATTTTTAAATATTAAAATTCAAAATTT-GTGGCAACATTGATTACAGAATA
1 ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-GAATTTCGAGGCAA-GTCGGTTACAGAATC
* * *
43338887 AAAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTATC-ATGTGATGCATAGTACACT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATAGAAAACT
*
43338951 TCTCGT-TTTATG
128 TCTCGTGTTTTTG
* * * *
43338963 ATTTTTTTAATTTCGTTTTTAAATATTAAATTTTGAATTTCGAGGCCAAGTCGGTTACAGAATTA
1 ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTCGGTTACAGAATCA
43339028 AAGATAAAGTAT
65 AAGATAAAGTAT
43339040 TGATAAGCCA
Statistics
Matches: 2258, Mismatches: 435, Indels: 181
0.79 0.15 0.06
Matches are distributed among these distances:
139 5 0.00
140 66 0.03
141 315 0.14
142 887 0.39
143 579 0.26
144 384 0.17
145 22 0.01
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (140 bp):
ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAGTCGGTTACAGAATCAA
AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGAAAACTTCT
CGTGTTTTTG
Found at i:43337423 original size:426 final size:425
Alignment explanation
Indices: 43336117--43347598 Score: 5548
Period size: 426 Copynumber: 26.7 Consensus size: 425
43336107 CACCTCCCAT
* * * *
43336117 TTTTTATAATTTCATTTTTTAATATTAAAATTTGAATTTCAAGGCAACGTTGGTTACAGAATCAA
1 TTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAA
* * *
43336182 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTATCATGTGATGCATAGCAAAGTTCT
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCT
* * *
43336247 CGTGTTTTATGATTTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAATTTCGAGGCCAAG-T
130 CGTGTTTTATGA--TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTT
* * *
43336311 CATTTATAGAACCAGAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGAT
193 CA-TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGAT
* * * * * *
43336376 GCATGGCGAAGTTCACGTCTGTTATGATTGTTCTCAATTTCATTTTTAAATATTGAAACTCGAAT
257 GCATAGCGAAGTTCTCGTGTCTTATGATTCTT-TTAATTTCATTTTTAAATATTGAAACTCGAAT
* * * *
43336441 TTTGATGCAAAGTCCGTTACAGAATTAAAGATAAAATATAAATTTTTAAGTGGTTAAAATGGAAA
321 TTTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAA
* * * * ** * *
43336506 TATACAATGTGATACATAGAAAACTAATTGTGTTTTTCG-C
386 TTTACCATATGATGCATAGAAAACTTCTCGTGTTTAT-GAC
* * * *
43336546 TTTTTTTAATTTTATTTTTAAAAATTAAAATTCGAAATTCGAGGCAACGTCGGTTACAAAATCAA
1 -TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAA
* * * *
43336611 AGATAGAGTATAAATTTTTAAGAGGTTAAGATGGAAAGTTATCATGTGATGCATAGAAAACTTAT
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCT
* * * * * *
43336676 TGTGTTTTATGATTTTTTTTTAATTTCATTTTTAGATGTTAAAATTCGAATGTCGAGGCAAAG-T
130 CGTGTTTTATGA--TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTT
* * *
43336740 CAATTACATAATCAAAGATAAAGTATAAATTTTTAAGAGATTAAAATAGAAATTTACAATGTGAT
193 C-ATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGAT
* * * * *
43336805 ACATAACGAAGTTCCCGTGTCTTATGATTGTTTTTAATAT-ATTTTTAAATATTGAAACAT-GAA
257 GCATAGCGAAGTTCTCGTGTCTTATGATT-CTTTTAATTTCATTTTTAAATATTGAAAC-TCGAA
* * * *
43336868 TTTTGAGGCGAACTCCATTAC-GCAATTAAAGATAAAGTATAAATTTGTAAGCGGTT-AAATGGA
320 TTTTGAGGCGAAGTCCGTTACAG-AATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGA
* * * *
43336931 AATTCACCTTGTGATGCATAGAAAACTTCTCGTGTTTTATGAT
384 AATTTACCATATGATGCATAGAAAACTTCTCGTG-TTTATGAC
* * * * * *
43336974 TTTTTATAATTTTATTTTTAAATATTAAAATTAGAACTTCGAGGCAATGTTGGTTTCAGAATCAA
1 TTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAA
*
43337039 AGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTATCATGTGATGCATAGAAAACTTCT
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCT
* ***
43337104 CGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTCCAAGGCCAAGTTCA
130 CGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTTCA
* * * *
43337169 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGACGTTAAAATGGATATTTACCATGTGATGCT
195 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* *
43337234 TAGCGAAGTTCTCGTGTCTTAT-AATCTTTTGACTTTCATTTTTAAATATTGAAACTCGAATTTT
260 TAGCGAAGTTCTCGTGTCTTATGATTCTTTT-AATTTCATTTTTAAATATTGAAACTCGAATTTT
* * * * * *
43337298 GAGTCAAAGTCCGTTACGGAATTATAGATAAGAATATAAACTTTTAAGAGGTTAAAATGGAAATT
324 GAGGCGAAGTCCGTTACAGAATTAAAGATAA-AGTATAAATTTTTAAGAGGTTAAAATGGAAATT
* * ** *
43337363 TACCATGTGATACATAGAAAACTAATTGTGTTT-TGCAC
388 TACCATATGATGCATAGAAAACTTCTCGTGTTTATG-AC
* * * * * * *
43337401 TTTTTTAATTTTACTTTTAAATATTAAAATTCGAGTTTCGAGACAACGTCAGTTACAAAATAAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAAA
* ** * *
43337466 GTTAAAGTATAAATTTTTAAGAGGTTATGATGGAAATTTATCATGTGATGCATAGCAAACTTTTC
66 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCTC
* * * * * *
43337531 GTATTTTATGATTTTTTAAATTTCATTTTTAAATATTGAATTTTGAATTTTGAGG-CAAATTCGG
131 GTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTTC--
* *
43337595 A-TA-ATGAATCAAAGATAAATTATACATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATG
194 ATTACA-GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATG
* * * * *
43337658 CATAGCGAAATTCTCATGTCTTACGATTGCTTTTAATTT-ACTTTTAAATATTGAAACTCAAATT
258 CATAGCGAAGTTCTCGTGTCTTATGATT-CTTTTAATTTCATTTTTAAATATTGAAACTCGAATT
* ** ** * *
43337722 TTGAGGTGAAGTCTATTATGGAATT-AAGATAAAGTGTAAATTTCTAA-ATGGTTAAAATGGAAA
322 TTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGA-GGTTAAAATGGAAA
* * ** * * *
43337785 TTTTCAATATGATGCATAGCGAAGTTCTTGTGTCTAATGA-
386 TTTACCATATGATGCATAGAAAACTTCTCGTGT-TTATGAC
* * * ** **
43337825 TTCTCTTTAATTTCATTTTTAAATATTGAAACTCGAATTTCGAGGCCAA-TTAAGTTTTAGAATC
1 TT-T-TTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAACGTCGGTTACAGAATC
* * *
43337889 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTTATAATGTGATGCATA-ACAAAG
63 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAA-TTTATCATGTGATGCATAGA-AAAC
* * * * * * * **
43337953 TTTTCGTATCTTATGATTGTTTTTAA-TT-ATTTTGAATTATTGAAACTCGAATTTTGAGGTGAA
126 TTCTCGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA
* ** * ** * * *
43338016 GTCCATTATGGAATTAAAGATAAAGTGGAAATTTCTAAGTGGATAAAATGGAAAATTT-CAATGT
190 GTTCATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGG-AAATTTACAATGT
* * *
43338080 GATGCGTAGCAAAGTTCTCGTGTCTTATGATTCTCTTTAATTTCATTTTTAAATTTTGAAACTCG
254 GATGCATAGCGAAGTTCTCGTGTCTTATGATTCT-TTTAATTTCATTTTTAAATATTGAAACTCG
** * *
43338145 AATTTCAAGGCGAAGTCAGCTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGG-TAAAATGG
318 AATTTTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGG
** * *
43338209 AAATTTACCATATGATGCATATCAAAGTTCTCGTGTTTTATGAG
383 AAATTTACCATATGATGCATAGAAAACTTCTCGTG-TTTATGAC
* * * * *
43338253 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCAAGACCAA-GTCGATTATAGAATCAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAG-GCAACGTCGGTTACAGAATCAA
* * ** * ** *
43338317 AGATAAAGTATAAATTTGTAAGAGGTTAAAATGGATATTTA-CAATGCAATGCGTAGCGAATTTC
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATC-ATGTGATGCATAGAAAACTTC
* * * * * *
43338381 TCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATACTGAAACTCGAATTTTGAGGCGAAGTC
129 TCGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTT
* * * *
43338446 CGTTACAGAATCAAAGATAAAGTATAAATTTTTTATAGGTTAAAATGGAAATTTACCATGTGATG
193 CATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATG
* * * * * * * *
43338511 CATAGCAAAATTCTCGTATTTTATGATTTTTTTAAAATTTCATTTTTAAATATTAAAATTTGAAT
258 CATAGCGAAGTTCTCGTGTCTTATGATTCTTTT--AATTTCATTTTTAAATATTGAAACTCGAAT
* * * * *
43338576 TTCGAGGCGAAGTCGGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGCTAAAATGGAAA
321 TTTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAA
** * *
43338641 TTTACCATATGATGCATAGTGAAGTTCTCGTGTCTTATGAT
386 TTTACCATATGATGCATAGAAAACTTCTCGTGT-TTATGAC
* * * * * * *
43338682 TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGTCGAA-GTCTGTTACTGAATTA
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AACGTCGGTTACAGAATCA
* *
43338746 TAA-ATAATA-TATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACT
64 -AAGATAA-AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACT
* ** ** * * * *
43338809 AT-TTGTGTTTTGCGCCTTTTTTAATTTTATTTTTAAATATTAAAATTCAAAATTTGTGG-CAAC
127 -TCTCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-
* * * *
43338872 ATTGATTACAGAATAAAAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTATC-ATGT
190 GTTCATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGT
* * * * * *
43338936 GATGCATAG-TACACTTCTCGT-T-TTATGATTTTTTTAATTTCGTTTTTAAATATT-AAATTTT
254 GATGCATAGCGA-AGTTCTCGTGTCTTATGATTCTTTTAATTTCATTTTTAAATATTGAAA-CTC
* * * **** * *
43338997 GAATTTCGAGGCCAAGTCGGTTACAGAATTAAAGATAAAGTATTGATAAGCCATAA-AAG-TAAC
317 GAATTTTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTA-T-A-AATTTTTAAGAGGTTAAA
** * * * ** * * ** *
43339060 AT-G-TTTTTAATCCCATTCTTGATGCGTTTTTGGATGATTTATTACGTAAATTAGTGAA
379 ATGGAAATTT-A--CCA-T-ATGATGC----ATAGAAAACTT-CT-CGT-GTTTA-TGAC
** ** * * * *** * ** * * * *** *
43339118 TTTGATGCTTCTAATCCTTTAAAT-TCATGTTTCTATACTTAGGTGAGCATAGGGGACCGAAAAG
1 TTTTTTAATT-TCAT-TTTTAAATATTAAAATTCGA-A-TTTCGAG-GCA-A--CG-TCGGTTAC
** * * * * * * **
43339182 AGTGAAAAACAAGCCAAAATCGAGCAAAAAGAGTTGTTTTCAGCA--TCCACACGGCCTGAACAT
57 A--GAATCA-AAG--ATAA---AG-TATAA-A--T-TTTTAAG-AGGT-TAAAATG---GAA-AT
* * * * *** * * ***
43339245 TT-TCACACGGGCTGGCCACACGCCCA-TGTGTCAGCTAG-TGT-TGA-TTTCGCACCCTATTTC
103 TTAT--CATGTGAT-G-CATA-GAAAACT-TCTC-G-T-GTTTTATGATTTTTTTA----ATTTC
** ** ** * * * *
43339305 CCTTTTACACGA--AAAAACCCAATTTTTAGG----GTT--TCT-GAGCATTCTAAAGTTTATAA
155 ATTTTTA-AATATTAAAATTCGAATTTTGAGGCCAAGTTCAT-TACAG-AATC-AAAG---ATAA
* ** **** * * * * * * * **
43339361 A-TACAAA-TTAGAAGAGGACCTAA-GGAGCATGTAGAGACGATTGAAGAAATTACTCGAAGAAC
213 AGTATAAATTTTTAAGAGGTTAAAATGGA-AATTTACA-ATG--TGATG-CA-TA-GCGAAGTTC
* * ** * *** **** * * * * * **
43339423 ACCAT-T-GGA-GCCA-ACTCAGAAGCGGATCTCCTTCAAGATTGAAGATCTC--CTTTTAACTT
271 -TCGTGTCTTATG--ATTCTTTTAATTTCAT-T-TTTAAATATTGAA-A-CTCGAATTTTGA-GG
** * * ** * *** *
43339482 CTTTTGAAGT---TTATTTGAATTTATTTATGTCTCGTAGTTTTTCTGATTTTGAGATGTTTTCT
328 C----GAAGTCCGTTA-CAGAA-TTA---AAG-AT-AAAGTATAAAT--TTTTAAGA-G------
* * * * * * * * *** * * * *
43339544 TTTCAGATTATGAACTAAATT-CCCTA-GATACCTAGGGAAGA-TGAAACCT-ATGATGAA
373 GTT-A-A-AATGGA--AATTTACCATATGATGCATA--GAAAACT-TCTCGTGTTTATGAC
* * * * ** * ** *
43339601 TCTTATT-ATTTGATTTTT-GA-ATTACAAGA-T-AAATACTT-GATTC-TCGTTCTCAATTA-T
1 T-TTTTTAATTTCATTTTTAAATATTA-AA-ATTCGAAT--TTCGAGGCAACG---TCGGTTACA
* *** ** *** * * * ** * ** * * * *
43339658 GTATGTTTATTTCGTGTTTTAATATTTTAGGGATATTAATTCATGTTTAATGTTCTTATTTCAGT
58 GAAT-CAAAGATAAAGTATAAAT-TTTTA-AGAGGTTAA--AATG-GAAAT-TTATCATGTGA-T
* * * **** ** * ** **
43339723 G--GAGCAAAA-GTCTC-TGTTTAAGAGTAGATCTAGCATAACTGAGTGGAGTTGCATGCAATCC
115 GCATAG-AAAACTTCTCGTGTTT--TA-T-GAT-TTTTTTAA-T---TTCA-TT--TTTAAATAT
* * * * * **
43339784 TAGAAATAGGACGACATAAATCTACTGGATTAGAGTCAA-ATCTAATACGAGAATCCATAGATCG
167 TA-AAAT---TCGA-AT---T-T--T-G---AG-GCCAAGTTC-ATTAC-AGAAT-CAAAGATAA
**** * * * * * * * *
43339848 AGT-T-AATGCGACAATAGGGGTTTTAATTAGAAACATATTTCAAT-TAAT-CA-ACCTAGAG-T
213 AGTATAAAT--TTTTA-AGAGG-TTAAAAT-GGAA-AT-TTACAATGTGATGCATAGCGA-AGTT
* * * * * ** **** * * * * *
43339907 C-AGT-TGTTCTTACTC-TCGAAAGAGA-TATTAACATAATT--TA--GGGATTTCT-ACGGACC
270 CTCGTGTCTTATGATTCTTTTAATTTCATTTTTAA-AT-ATTGAAACTCGAATTT-TGA-GG-CG
* * ** * * * * * * *
43339963 AAGACAC--AAGTGAA-TAAATCGTTTAA-T-TCAGTTTCAGAATAATAGGTTAAGTCTAGGTGG
330 AAGTC-CGTTACAGAATTAAA--GATAAAGTATAAATTT----TTAAGAGGTTAA----A-ATGG
* * ** * ** * *
43340023 -ATTCTTTCC-TGGGTATTGTC-TATATTA--T-TGGT-TTTATTCGATTA
383 AAAT-TTACCATATG-A-TG-CATAGAAAACTTCTCGTGTTTA-T-GA--C
*** * * * ** *
43340067 TTTTCTTAA-TTCATTCTCTATTGCGTTCTTAGTAATT--AGTTT--AGTTAA--T---TT-TAG
1 TTTT-TTAATTTCA-T-T-T-TT-AAATATTA-AAATTCGAATTTCGAGGCAACGTCGGTTACAG
* *** ** * * * * * * *
43340121 -ATTAAA-A-ACAA-TCACCCCA-TTTTATCAGCTAAATAATAGAAA--AAACA-GTAATTACTA
59 AATCAAAGATA-AAGT-A-TAAATTTTTAAGAGGTTAA-AATGGAAATTTATCATGTGA-TGC-A
**** * * ** ** *** * ** *** * *
43340178 CTACTTTTAGTCCTCGTG-GATACAATATTCCCTACTCACCATAGCTATACTATT---GTTCGAT
118 -TA-GAAAACTTCTCGTGTTTTATGAT-TTTTTTAAT-TTCATTTTTA-AATATTAAAATTCGA-
** *** ** * * * * ** *
43340239 AGGTGCTCTTGCCTTTGTCATAATTATAGTTAGTTTAGTGACCATCAAGTATAAATTTTTAAGAG
177 A--TTTTGAGGCC-AAGT--TCATTACAG--A-ATCA---AAGATAAAGTATAAATTTTTAAGAG
* * *
43340304 GTTAAAATGGAAATTTAAAATGTG-TGCATAGCGAAATTCTCGTGTCTTATGATTTTTTTAATTT
231 GTTAAAATGGAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTAATTT
* * * *
43340368 -ATTTTTAAATATTGAAACTCAAATTTTGAGGCAAACTCCGTTACGGAATTAAAGATAAAGTATA
296 CATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATA
* * * * **
43340432 AATTTTTAAGTGGTTAAAATGGAAATTTACCTTGTGTTGCATAGAAAACTTCTATTGTTTTATGA
361 AATTTTTAAGAGGTTAAAATGGAAATTTACCATATGATGCATAGAAAACTTCTCGTG-TTTATGA
*
43340497 A
425 C
* * * *
43340498 TTTTTATAATTTCATTTTTAAATATAAAAATTCAAATTTCAAGGCAATGTCGGTTACAGAATCAA
1 TTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAA
* *
43340563 ATATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATATTGCATAGCA
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATA--G---A--A
* * * *
43340628 AACTTCTTGTGATTTATGATTTTTTTTAATTTCATTTTTAAATGTTAAAATTCG-ATTTTCTAGG
123 AACTTCTCGTGTTTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTT-GAGG
* * ** * ** *
43340692 CAAAG-TCAGTTACAAAATCAAAGATACTGTATAATTTTTTAAGAGACTAAGATGGAAATTTACA
186 CCAAGTTCA-TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACA
* * *
43340756 ATGTGATGCATAGCGAAGTTCTCGTGTCTTATGAATCTTTTTAATTACATTTTTAAATATTAAAA
250 ATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTC-TTTTAATTTCATTTTTAAATATTGAAA
** * * *
43340821 CTCGAATTTTGAGTTGAAGTCCGTTACGGAATTATAGATAAAGTATAAACTTTTAAGAGGTTAAA
314 CTCGAATTTTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAA
* ** * *
43340886 ATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTATTT-TGTAC
379 ATGGAAATTTACCATATGATGCATAGAAAACTTCTCGTGTTTATG-AC
* ** * *
43340933 TTTTTTTAATTTTATTTTTAAATATTAAAATTC-AAGTTTCGAAACAACTTCGGTTACAAAATCA
1 -TTTTTTAATTTCATTTTTAAATATTAAAATTCGAA-TTTCGAGGCAACGTCGGTTACAGAATCA
* * * * * ** *
43340997 AAGTTAAAGTATAAATTTATAAGAGGTTAAAAAGGAAGTTTACCATGTGATGCATAGCGAAGTTC
64 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTC
* * * * * **
43341062 TCGTGTCTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGA-GAAAATGT
129 TCGTGTTTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GT
** * * * * *
43341126 TTGTTACGGAATTATAGATAAAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGAT
192 TCATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGAT
** * * * * * * * *
43341191 GCATAGAAAACTTCTTGTGTTTTATGCTTCTTTTTTTTAATTTTATTTTTAAATATTAAAATTCA
257 GCATAGCGAAGTTCTCGTGTCTTATGATTC----TTTTAATTTCATTTTTAAATATTGAAACTCG
* * * *
43341256 AATTTTAAGTC-AACGT-CGATTACAGAATCAAAGATAAAGTATAAATTTTAAAGAGGTTAAAAT
318 AATTTTGAGGCGAA-GTCCG-TTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAT
* * * * *
43341319 GAAAATTTATCATGTGATGCATAGCAAGCTTCTCGTGTTATATGA-
381 GGAAATTTACCATATGATGCATAGAAAACTTCTCGTGTT-TATGAC
* * * *** *
43341364 TTTTCTAATTTGATTTTTAAATATTAAAATTCGAATTTCGACGCCAA-GTCTAATAGAGAATCAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGA-GGCAACGTCGGTTACAGAATCAA
* * * * * ** *
43341428 AGTTAGAGTATAAATTTATAAGAGGTTAAAATGGAGACTTA-CAATGTGATGCATAGCTAAGTTC
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATC-ATGTGATGCATAGAAAACTTC
* * * * * * * *
43341492 TCGTGTCTTATGATTGTTTTAAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTCAGGCGAACT
129 TCGTGTTTTATGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTCGAATTTTGAGGCCAAGT
* * * * ** * *
43341555 CCGTTAC-GAAATTAAAGTTAAAGTATAAATTTTTAATTGGTTAAAATGGAAATTTACCATGTAA
192 TCATTACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGA
*** * * * * * * *
43341619 TGCATATAAAACTTCTCGTGTTTTATGATTTTTTGTAATTTCATTTTTAGATATTAAAATTTGAA
256 TGCATAGCGAAGTTCTCGTGTCTTATGATTCTTT-TAATTTCATTTTTAAATATTGAAACTCGAA
* ** * * *
43341684 TTTAGAGGC-AACGTTGGTTA-ACGAA-TAAGAAATAAAGTTTGAATTTTTAAGAGGTTAAAATG
320 TTTTGAGGCGAA-GTCCGTTACA-GAATTAA-AGATAAAGTATAAATTTTTAAGAGGTTAAAATG
* ** * * * *
43341746 GAAATTTATCATGGGATACATAGCAAAGTTCTCGTGTTTTATGATT
382 GAAATTTACCATATGATGCATAGAAAACTTCTCGTG-TTTATGA-C
* * ** **
43341792 TTTTTTAAATTTCATTTTTAAATATTAAAATTCGAATTTCAAAGCCAA-GTCAATTTGAGAATCA
1 TTTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTC-GAGGCAACGTCGGTTACAGAATCA
** *
43341856 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATAGCGAAGTT
64 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATC-ATGTGATGCATAGAAAACTT
* * * * * * *
43341920 CTCGTGTCTTATGATTGTCTTTAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTGAGGCAAAC
128 CTCGTGTTTTATGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTCGAATTTTGAGGCCAAG
* * * * * * *
43341983 TCCGTTACGGAATTAAAGATAGAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTATC-ATATG
191 TTCATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTG
* * * * *
43342047 ATGCATAGCAAAGTTCTCGTGTTTTATGAGTT-TTTTAATTTCATTTTTAAATATTAAAATTTGA
255 ATGCATAGCGAAGTTCTCGTGTCTTATGA-TTCTTTTAATTTCATTTTTAAATATTGAAACTCGA
* * * * *
43342111 ATTTCGAGGCCAAGT-CGATTATAGAATCAAAGATAAAGTATAAATTTGTAAGAGGTTAAAATGG
319 ATTTTGAGGCGAAGTCCG-TTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGG
* * ** ** * * *
43342175 ATATTTACAATGCGATGTGTAGCAAAGTTCTCGTGTCTTATGAT
383 AAATTTACCATATGATGCATAGAAAACTTCTCGTGT-TTATGAC
* * * * * *
43342219 TCTTTTTAATTTCATTTTCAAATATT-AAATTACGAAATTCGAGGTGAA-GTCAGTTATAGGATC
1 T-TTTTTAATTTCATTTTTAAATATTAAAATT-CGAATTTCGAGG-CAACGTCGGTTACAGAATC
* * * * ** *
43342282 AAAGATAAAGTATAATTTTTTAAGAGATTAAAATGAAAATTTACCATGTGATGCATAGCGAAGTT
63 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTT
* * * * * ****
43342347 CTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCCAA-TTTGACTTGAAGT
128 CTCGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGT
* ** * * * * *
43342411 CCGGTACGGAATTATAA-ATAAAGTATAAACTTTTAAGAGGTTAAAATAGAAATTTACCATGTGA
192 TCATTACAGAATCA-AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGA
** * * * ** * * * * *
43342475 TGCATAGAAAACTAT-TAGTGTTTTGCGCTT-TTTTAATTTTATTTTTAAATATTAAAATTCGAG
256 TGCATAGCGAAGT-TCTCGTGTCTTATGATTCTTTTAATTTCATTTTTAAATATTGAAACTCGAA
* * * * * * *
43342538 TTTGGAGGC-AACGTCGGTTATAGAATCAAATATAAAATATAAATTTTTAAGAGGTTAAAAAGGA
320 TTTTGAGGCGAA-GTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGA
* * * *
43342602 AATTTACCTTGTGATGCATAGCAAAGTTCTCGTGTTTTATGA-
384 AATTTACCATATGATGCATAGAAAACTTCTCGTG-TTTATGAC
* * *
43342644 TATTTTTGAATTTTATTTTTAAATATTAAAATAT-GAATTTCGAGGCAATGTCGATTACAGAATC
1 T-TTTTT-AATTTCATTTTTAAATATTAAAAT-TCGAATTTCGAGGCAACGTCGGTTACAGAATC
* * * *** *
43342708 AAAGATAAAGTATAAATTTTTAGGAGGTTAAAATAGAAATTTACCATGTGATGCATACCGAAGTT
63 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTT
* * * * * * * ***
43342773 CTTGTGTCTTATGATTCTTTTGAATTTCATTTTGAAAAATTGAAATTCGAAATTTGAGTTGAAGT
128 CTCGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGT
* * * ** * * * *
43342838 CCGTTAC-GCAATTATGGATAGAGTATAAACTTTTAAGAGGTTAAAATGGGAACTTATC-ATGTG
192 TCATTACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTG
** ** * * * * * * * * *
43342901 ATGCATAGAAAAGTAATTGTGTTTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAG
255 ATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTAATTTCATTTTTAAATATTGAAACTCGAA
** * * * * * * *
43342966 TTTCAATGC-AACATCAGTTACAGAATAAAAGTTAAAGTATAAATTTTTAAGAGGTTAAGATAGA
320 TTTTGAGGCGAA-GTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGA
* * *
43343030 AATTTATCATGTGATGCATAGCAAAA-TTTTCGTGTTTTATGA-
384 AATTTACCATATGATGCATAG-AAAACTTCTCGTG-TTTATGAC
* * * * * ** *
43343072 TTTCTTATATTTCATTTTTAATTATTAAAATTCAAATTTCGAGACAAAGTCAATTAC-G----GA
1 TTTTTTA-ATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAA
* * **
43343132 AGATAAAGTATACAA-TTTTAAGAGTTTTAAATGGAAATTTA-CAATGTGATGCATAGTGGAA-T
65 AGATAAAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTATC-ATGTGATGCATAG-AAAACT
* * * * *
43343194 TCTTGTGTCTTATGACTGTTTTTAATTT-ATTTTTAAATATTGAAACTT-GAATTTTGAGGCTAA
127 TCTCGTGTTTTATGA-TTTTTTTAATTTCATTTTTAAATATT-AAAATTCGAATTTTGAGGCCAA
* * * * * * *
43343257 CTTCGTTACGGAATTAAAGATAAAGTATAAATTTGTAAGAGGTTAAAATGGATATTTAAAATG-G
190 GTTCATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTG
** **** * * * * ** * * * ** * *
43343321 AT-TTTTTTTAATTTCAC-T-T-TTA--AATATTAAAATTTGA-ATTT-CATGGT-CAAGTC-AA
255 ATGCATAGCGAAGTTCTCGTGTCTTATGATTCTTTTAATTTCATTTTTAAATATTGAAACTCGAA
* * * * ** * * *
43343376 TTAT-A---GAA-T-CG--A-A-TA-TAAAGTATAAATTTTTAAGAGGTTAAAGCGG---AAATT
320 TTTTGAGGCGAAGTCCGTTACAGAATTAAAG-ATAAA-GTATAA-ATTTTTAAGAGGTTAAAATG
* * *** * * * *
43343427 TACATGTGTTA-CATA-GA---A-A-ACTTCTTGT-GTTTTATGCT--T
382 GA-A-AT-TTACCATATGATGCATAGAAAACTTCTCGTGTT-T-ATGAC
* * * * * *
43343466 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCAAGGTAACGTCGATTATAGAGTCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAAA
* * * * * * * *
43343531 GATAGAGTATAAATTTTAAAGAGGCTAAAATGGAAATTTATCATGTGATGTATAGCAAGCTACTT
66 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCTC
* ** * * *
43343596 GTATTTTAT-AACTTTTTAATTTGATTTTTAAATATTAAAATTCGAATTTCGAGACCAAG-TCAG
131 GTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTTCA-
* *
43343659 TTAGAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATACA
195 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* * * *
43343724 TAGCGAAGTTCTCGTGTCTTATGATTGTTTTCAATTT-A-TTTTAAGATTTTGAAACTCAAACTT
260 TAGCGAAGTTCTCGTGTCTTATGATTCTTTT-AATTTCATTTTTAA-ATATTGAAACTCGAATTT
* * * * * * *
43343787 TGAGGCAAACTCCATTACGGAATTAAAGATAAAGTGTAAATTTTTAAGTGGTTAAAAT-----TC
323 TGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATT
* *
43343847 T-CC------TG--T-------TT-T-ATG---AT-TC
388 TACCATATGATGCATAGAAAACTTCTCGTGTTTATGAC
* * * *
43343863 -TTTATAATTTCATTTTTAAATATTAAAATTTGAATTTCAAGGCAACGTTGGTTACAGAATCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAAA
* * * * * ** *
43343927 TATAAAGTATAGATTTTTTAAGAGGTTAAAATGGAAATTTACCATATGGTGCATAGCGAAGTTCT
66 GATAAAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCT
** * * * * * * * *
43343992 CAAGTCTTATGATTCTTTTTAATTTCATTTTTAAGTATTGAAACTCAAATTTTGAGTCAAAGTCC
130 CGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTTC
* * * * * * *
43344057 GTTACGGAATTATAGATAAAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGAGATGC
194 ATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
** *** * * ** * * * * * * *
43344122 ATAGAAAACCACTTGTGTTTTGCGCTTTTTTTAATTTTATTTTAAAATATTAAAATTCAAATTTT
259 ATAGCGAAGTTCTCGTGTCTTATGATTCTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
* * * *
43344187 GAGGC-AACTTCGGTTACAGAATAAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATT
324 GAGGCGAA-GTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATT
* * * * * *
43344251 TATCATGTGATACATTGCAAACTTCTCGTGCTTTATGATTTA
388 TACCATATGATGCATAGAAAACTTCTCGTG-TTTATGA---C
* *
43344293 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAA-GTCGGTTATAGAATCAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAACGTCGGTTACAGAATCAA
* * *
43344357 AGATAAAGTATTAATTTTTAAGAGGTTAAAATAGAAATTTA-CAATGTGATTCATAGAGAAA-TT
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATC-ATGTGATGCATAGA-AAACTT
* * * * * * * *
43344420 CTGGTGTCTTATGA-TTTTTTAATTT-ATTTTTAAATTTTGAAACTCGAATTTTGAGGCGAACTC
128 CTCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTT
* ** * * * * ** *
43344483 CGTTATGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGAAAACTTACCTTCTGATG
193 CATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATG
** * * * * * * * *
43344548 CATAGAAAACTTCTCTTGTTTTATGATTTTTTATAATTTCATTTTTAAACATTAAAATTTGAATT
258 CATAGCGAAGTTCTCGTGTCTTATGATTCTTT-TAATTTCATTTTTAAATATTGAAACTCGAATT
* * * * * * *
43344613 TCGAGGC-AACATCTGTTATAGAATCAAATATAAAGTATAAATTTTTAAGAGGTGAAAATGGAAA
322 TTGAGGCGAA-GTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAA
* * ** *
43344677 TTTACCATGTGATGCATAGCATCCTTCTCGTGATTTATGAT
386 TTTACCATATGATGCATAGAAAACTTCTCGTG-TTTATGAC
* *
43344718 TGTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTTCTAGGCAAAGTCGGTTA-AGAAATC
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTCGAA-TTTCGAGGCAACGTCGGTTACAG-AATC
* * * * * ** *
43344781 AAAGACACAGTATAAATTTTTAAGAGATTAAGATGGAAATTTA-CAATGTGTTGCATAGCGAAGT
63 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATC-ATGTGATGCATAGAAAACT
* * * * * * * **
43344845 TCTAGTGTCTTGTGAATCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGTTCAAG
127 TCTCGTGTTTTATG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAG
* ** * * * * * * *
43344910 TCCATTATGGAATTATATATAAAATATAAACTTTTAAGAGGTTAAAATGGAAACTTACCATGTGA
191 TTCATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGA
** * ** * * ** * * * * *
43344975 TGCATAGAAAACTAATTGTGTTTTCCGCTT-TTTGTAATTTTATTTTTAAATATTAAAATTCGAG
256 TGCATAGCGAAGTTCTCGTGTCTTATGATTCTTT-TAATTTCATTTTTAAATATTGAAACTCGAA
* ** * * *
43345039 TTTTAAGGC-AACGTTAGTTACAAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGA
320 TTTTGAGGCGAA-GTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGA
* ** ** *
43345103 AATTTACCATGTGATGCATAGTGATGTTCTCGTGTCTTATGAA
384 AATTTACCATATGATGCATAGAAAACTTCTCGTGT-TTATGAC
* * * * * *
43345146 TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGGGGCAAAGTTC-GTTAC-GAAATT
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACG-TCGGTTACAG-AATC
* * *
43345209 ATAGATAAAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTT
63 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTT
* * * * *
43345274 CTTGTGTTCTATGCTTTTTTTATTTATTTCA-TTTTAAATTATTAAAATTCGAA-TTTCAGGGCA
128 CTCGTGTTTTATGATTTTTTTA---ATTTCATTTTTAAA-TATTAAAATTCGAATTTTGAGGCCA
* * *
43345337 A-TGTCGATTACAGAATCAAAGATAAAGTATAAATTTTAAAGAGGCTAAAATAGAAATTTATC-A
189 AGT-TC-ATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAA
* * * * *
43345400 TATGATGCATAGC-AAGCTTCTCGTGTTTTATGA-T-TTTTAATTTGATTTTTAAATATTAAAAT
251 TGTGATGCATAGCGAAG-TTCTCGTGTCTTATGATTCTTTTAATTTCATTTTTAAATATTGAAAC
* * * * ** * *
43345462 TCTAAATATAAGGC-AACGTTGGTTACAGAATCAAAGATAAAGTACAAATTTTTAAGAGGTTAAA
315 TCGAATTTTGAGGCGAA-GTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAA
* ** * ** * * *
43345526 ATGAAAATTTATAATGTGATGCATAGCGAAGTTCTCGTGGCTTATGAT
379 ATGGAAATTTACCATATGATGCATAGAAAACTTCTCGT-GTTTATGAC
* * * * * *
43345574 TGTTTTTAATTT-A-TTTTAAGATTTTGAAACTCGAA-TTCTGAGTCAAAC-TCCGTTACGGAAT
1 T-TTTTTAATTTCATTTTTAA-ATATTAAAATTCGAATTTC-GAGGC-AACGTCGGTTACAGAAT
* * * *
43345635 TAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATTGAAATTTACCATGTGATGCATAGAAAACT
62 CAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACT
* * * * * *
43345700 TCTCATGTTTTATGATTTTTTATAATATCATTTTAAAATTTTAAAATTCGAATTTCGAGG-CAAC
127 TCTCGTGTTTTATGATTTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAG
** * * * * **
43345764 TTCGGCTACAGAATGAAATATAAAGTATAATTTTTTAAGTGGTTAAAATGGAAATTTACCTTGTG
191 TTC-ATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTG
* * * * * * *
43345829 ATGCATAGCAAACTTGTCGTGAT-TTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTTG
255 ATGCATAGCGAAGTTCTCGTG-TCTTATGA-TTCTTTTAATTTCATTTTTAAATATTGAAACTCG
* * * * *
43345893 -ATTTTCTAAGCGAAGTCGGTTACAGAATCAAAGATACAA-TATAAATTTTTAAGAGGTTAATAT
318 AATTTT-GAGGCGAAGTCCGTTACAGAATTAAAGATA-AAGTATAAATTTTTAAGAGGTTAAAAT
* * * * * *
43345956 GGAAATTTACAATGTGATGCATAGTGAAGTACTTCTTGTGTCTTATTAA
381 GGAAATTTACCATATGATGCATA--GAA-AACTTCTCGTGT-TTATGAC
* * * * *
43346005 TCTTTTTAATTTCATTTTTAAATATTGATACTCAAATTTCGAGGCGAA-GTCCGTTACAGAATCA
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AACGTCGGTTACAGAATCA
* * * * **
43346069 AAGATAAAGTATAAATTTTTAAGAGGTTAAATTAGAAATTTACCATGTGATGCGTAGAAAACTAA
64 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTC
* ** * * * *
43346134 TTGTGTTTTGCGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTTAAGG-CAACG-T
129 TCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTT
* * * * * * *
43346197 CGGTTACAGAGTCAAAGATAGAGTATAAGTTTTTAAGAGGTTAGAAA-GGAAGTTTGCCATGTGA
193 C-ATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTA-AAATGGAAATTTACAATGTGA
* * **
43346261 TGCATAGCGATGTTCTCGTGTCTTATGAGTCTTTTTAATTTCATTTTTAAATATTGAAACAAGAA
256 TGCATAGCGAAGTTCTCGTGTCTTATGATTC-TTTTAATTTCATTTTTAAATATTGAAACTCGAA
* * * * * *
43346326 TTTTGGGGCAAAGTTCGTTACAGAATTATAGATAAAGTATATATTTTTAAGAGGTTAAAATGAAA
320 TTTTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAA
* * * * **
43346391 ATTTACTATGTGATGCGTAGAAAACTTCTTGTGTTTTATGTT
385 ATTTACCATATGATGCATAGAAAACTTCTCGTG-TTTATGAC
* *
43346433 TTTTTTTATTTCATTTTTAAATATTAAAATTCAAATTT-GAAGGCAACGTCGGTTACAGAATCAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCG-AGGCAACGTCGGTTACAGAATCAA
* * * * *
43346497 AGATAAAGTATAAATTTTAAAGATGTTAAAATAGAAATTTATCATGTGATGCATAGCAAGCTTCT
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCT
* * * *
43346562 CGTGTTATATGA-TTTTTTAATTTGATTTTTAAATATTAAAACTCGAATTTCGAGGCCAAGTT-A
130 CGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTTCA
* * * * *
43346625 GTTAGAGAATCAAAGATAGAA-TATAATTTTTTAATAGGTTAAAATGGAAATTTATAATGAGATG
195 -TTACAGAATCAAAGATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATG
* * * *
43346689 CATAGCGAAGTTCTCGTGCCTTATGATTGTTTTTAATTT-ATTTTTAGATTTTGAAACTCGAATT
258 CATAGCGAAGTTCTCGTGTCTTATGATT-CTTTTAATTTCATTTTTAAATATTGAAACTCGAATT
* * *
43346753 TTGAGGCGAA--CTGTTACTGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAAT
322 TTGAGGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAAT
** * * *
43346816 TTACCATGGGATGTATATAAAACTTCTCGTGTTTTATGATA
387 TTACCATATGATGCATAGAAAACTTCTCGTG-TTTATGA-C
* * * * **
43346857 TTTTTATAATTTCAATTTTAAATAGTAAATTTCGAATTTTGAGGCAACGTTAGTTACAGAATCAA
1 TTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAA
* * * * * *
43346922 AG-TAAAGTATAAATTTTT-AGTGGTTAAAATAGAAATTTATCATGTGATGCGTAGCATAGTTCT
65 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCT
** * *
43346985 CACGTTTTATGATTTTTTTAATTTCATTTTTAAGTATTAAAATTCAAATTTTGAGGCCAAG-TCG
130 CGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTTC-
43347049 ATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
194 ATTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
* * * * *
43347114 ATGGCGAAGTTCTCGTCTGTTATGATTGTTTTCAATTTCATTTTTGAATATTGAAACTCGAATTT
259 ATAGCGAAGTTCTCGTGTCTTATGATTCTTTT-AATTTCATTTTTAAATATTGAAACTCGAATTT
* * * * * * *
43347179 TGAGGTGAAGCCCGTTACGGAATGAAAGA-AAATATATAAATTTTTAAGTGGTTAAAATGAAAAT
323 TGAGGCGAAGTCCGTTACAGAATTAAAGATAAA-GTATAAATTTTTAAGAGGTTAAAATGGAAAT
* * * **
43347243 TTACAATGTGATGCATGGAAAACTAAAT-GTGTTT-TG-C
387 TTACCATATGATGCATAGAAAACT-TCTCGTGTTTATGAC
* * * * * *
43347280 GTTTTTTTTTTAATTTTATTTTTAAATGTTAAAATTTGAAATTCGAGGCAACCTCGATTACAGAA
1 -----TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAA
* * * * *
43347345 TTAAAGATAAAATATAAATTTTTAAGAGGTTTAGAT-GAAAGTTTATCATGTGATGCATAGCAAA
61 TCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAA-TTTATCATGTGATGCATAGAAAA
* * * ** * **
43347409 TTTGTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATGTCAAAGTAA
125 CTTCTCGTGTTTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCA
* **
43347474 AG-TCAGTTACAAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATAAAAATTTACAATG
189 AGTTCA-TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATG
* * * * *
43347538 TAATGTATAGCGAAGTTCTCGTGTCTTATAATTGTTTTTAATAT-ATTTTTAAATATTGAAA
253 TGATGCATAGCGAAGTTCTCGTGTCTTATGATT-CTTTTAATTTCATTTTTAAATATTGAAA
43347599 TTGACAAACT
Statistics
Matches: 8598, Mismatches: 1826, Indels: 1257
0.74 0.16 0.11
Matches are distributed among these distances:
393 42 0.00
394 11 0.00
395 4 0.00
396 86 0.01
397 129 0.02
398 68 0.01
399 195 0.02
400 15 0.00
401 12 0.00
402 17 0.00
404 11 0.00
405 7 0.00
406 3 0.00
407 6 0.00
408 4 0.00
409 2 0.00
410 3 0.00
411 7 0.00
412 6 0.00
413 5 0.00
414 10 0.00
416 11 0.00
417 5 0.00
418 7 0.00
419 13 0.00
420 5 0.00
421 73 0.01
422 79 0.01
423 140 0.02
424 209 0.02
425 363 0.04
426 1378 0.16
427 1157 0.13
428 1378 0.16
429 997 0.12
430 530 0.06
431 430 0.05
432 130 0.02
433 68 0.01
434 43 0.01
435 138 0.02
436 146 0.02
437 38 0.00
438 46 0.01
439 22 0.00
440 24 0.00
441 3 0.00
442 8 0.00
443 16 0.00
444 8 0.00
445 11 0.00
447 3 0.00
448 4 0.00
449 1 0.00
450 1 0.00
451 4 0.00
452 10 0.00
453 1 0.00
454 1 0.00
455 5 0.00
456 16 0.00
457 9 0.00
458 6 0.00
459 3 0.00
460 12 0.00
461 14 0.00
462 13 0.00
463 17 0.00
464 41 0.00
465 26 0.00
466 22 0.00
467 27 0.00
468 14 0.00
469 12 0.00
470 9 0.00
471 14 0.00
472 9 0.00
473 22 0.00
474 6 0.00
475 9 0.00
476 11 0.00
477 5 0.00
478 11 0.00
479 6 0.00
480 10 0.00
481 10 0.00
482 10 0.00
483 17 0.00
484 8 0.00
485 3 0.00
486 8 0.00
487 5 0.00
488 6 0.00
489 2 0.00
490 16 0.00
491 5 0.00
492 2 0.00
493 9 0.00
494 2 0.00
497 2 0.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.39
Consensus pattern (425 bp):
TTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAACGTCGGTTACAGAATCAAA
GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAACTTCTC
GTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTTCAT
TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCAT
AGCGAAGTTCTCGTGTCTTATGATTCTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGA
GGCGAAGTCCGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC
CATATGATGCATAGAAAACTTCTCGTGTTTATGAC
Found at i:43341009 original size:142 final size:138
Alignment explanation
Indices: 43340285--43347600 Score: 4514
Period size: 143 Copynumber: 51.7 Consensus size: 138
43340275 AGTGACCATC
** * *
43340285 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAAAATGTG-TGCATAGCGAAA-TTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-AAAAGTTCTTGTG
* * * * *
43340348 TCTTATGATTTTTTTAATTT-ATTTTTAAATATTGAAACTCAAATTTTGAGGCAAACTCCGTTAC
65 T-TT-TGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGC-AAGTCGGTTAC
* *
43340412 GGAATTAAAGATA
126 AGAATCAAAGATA
* * * *
43340425 AAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCTTGTGTTGCATAGAAAACTTCTAT-TG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCT-TGTG
* * *
43340489 TTTTATGAATTTTTATAATTTCATTTTTAAATATAAAAATTCAAATTTCAAGGCAATGTCGGTTA
65 -TTT-TG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTA
*
43340554 CAGAATCAAATATA
125 CAGAATCAAAGATA
*
43340568 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATATTGCATAGCAAACTT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA--G---A--AAAGTT
* * *
43340633 CTTGTGATTTATGATTTTTTTTAATTTCATTTTTAAATGTTAAAATTCGATTTTCTAGGCAAAGT
59 CTTGTG-TTT-TGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGC-AAGT
* *
43340698 CAGTTACAAAATCAAAGATA
119 CGGTTACAGAATCAAAGATA
** * ** * * ** *
43340718 CTGTATAATTTTTTAAGAGACTAAGATGGAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * *
43340783 CTTATGAATCTTTTTAATTACATTTTTAAATATTAAAACTCGAATTTTGAGTTG-AAGTCCGTTA
66 -TT-TG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAG--GCAAGTCGGTTA
* * *
43340847 CGGAATTATAGATA
125 CAGAATCAAAGATA
* * ** *
43340861 AAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* ** *
43340926 TTTGTACTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAGTTTCGAAACAACTTCGGTTACA
66 TTTG-A-TTTTTTTAATTTCATTTTTAAATATTAAAATTCAA-TTTCGAGGCAA-GTCGGTTACA
* *
43340991 AAATCAAAGTTA
127 GAATCAAAGATA
* * * ** *
43341003 AAGTATAAATTTATAAGAGGTTAAAAAGGAAGTTTACCATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * ** **
43341068 CTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGAAAATGTTTGTTAC
66 -TT-TGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTAC
* * *
43341133 GGAATTATAGATA
126 AGAATCAAAGATA
* *
43341146 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* * ** * *
43341211 TTTATGCTTCTTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAATTTTAAGTCAACGTCGAT
65 TTT-TG----ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGT
43341276 TACAGAATCAAAGATA
123 TACAGAATCAAAGATA
* * * * *
43341292 AAGTATAAATTTTAAAGAGGTTAAAATGAAAATTTATCATGTGATGCATAG-CAAGCTTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAG-TTCTTGTG
* * * *** *
43341356 TTATATGA-TTTTCTAATTTGATTTTTAAATATTAAAATTCGAATTTCGACGCCAAGTCTAATAG
65 TT-T-TGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGA-GGCAAGTCGGTTAC
*
43341420 AGAATCAAAGTTA
126 AGAATCAAAGATA
* * * * * ** *
43341433 GAGTATAAATTTATAAGAGGTTAAAATGGAGACTTACAATGTGATGCATAGCTAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * * *
43341498 CTTATGATTGTTTTAAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTC-AGGCGAACTCCGTT
66 -TT-TGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTC-AA-TTTCGAGGC-AAGTCGGTT
* *
43341560 AC-GAAATTAAAGTTA
124 ACAG-AATCAAAGATA
** * * * *
43341575 AAGTATAAATTTTTAATTGGTTAAAATGGAAATTTACCATGTAATGCATATAAAACTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* * * *
43341640 TTTATGATTTTTTGTAATTTCATTTTTAGATATTAAAATTTGAATTTAGAGGCAACGTTGGTTA-
65 TTT-TGATTTTTT-TAATTTCATTTTTAAATATTAAAA-TTCAATTTCGAGGCAA-GTCGGTTAC
*
43341704 ACGAAT-AAGAAATA
126 A-GAATCAA-AGATA
* * * * * * *
43341718 AAGTTTGAATTTTTAAGAGGTTAAAATGGAAATTTATCATGGGATACATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* * ** *
43341783 TTTATGATTTTTTTTAAATTTCATTTTTAAATATTAAAATTCGAATTTCAAAGCCAAGTCAATTT
65 TTT-TGA-TTTTTTT-AATTTCATTTTTAAATATTAAAATTC-AATTTC-GAGGCAAGTCGGTTA
*
43341848 GAGAATCAAAGATA
125 CAGAATCAAAGATA
* ** *
43341862 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * * * *
43341927 CTTATGATTGTCTTTAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTGAGGCAAACTCCGTTA
66 -TT-TGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTC-AATTTCGAGGC-AAGTCGGTTA
* *
43341990 CGGAATTAAAGATA
125 CAGAATCAAAGATA
* * * * * *
43342004 GAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTATCATATGATGCATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* * * *
43342069 TTTATGAGTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAAGTCGATTATA
65 TTT-TGATTTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCGAGG-CAAGTCGGTTACA
43342134 GAATCAAAGATA
127 GAATCAAAGATA
* * * * ** * *
43342146 AAGTATAAATTTGTAAGAGGTTAAAATGGATATTTACAATGCGATGTGTAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * *
43342211 CTTATGATTCTTTTTAATTTCATTTTCAAATATT-AAATTACGAAATTCGAGGTGAAGTCAGTTA
66 -TT-TGATT-TTTTTAATTTCATTTTTAAATATTAAAATT-C-AATTTCGAGG-CAAGTCGGTTA
* *
43342275 TAGGATCAAAGATA
125 CAGAATCAAAGATA
* * * **
43342289 AAGTATAATTTTTTAAGAGATTAAAATGAAAATTTACCATGTGATGCATAGCGAAGTTCTCATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCT--TGT
* * * * *
43342354 CTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCCAATTT-GACTTG-AAGTCCGG-T
64 GTTTTGATT-TTTTTAATTTCATTTTTAAATATT-AAAATTCAATTTCGA--GGCAAGT-CGGTT
* *
43342416 ACGGAATTATAA-ATA
124 ACAGAATCA-AAGATA
* * * *
43342431 AAGTATAAACTTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGAAAACTAT-TAGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGT-TCTTGTG
** * * * *
43342495 TTTTGCGCTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTGGAGGCAACGTCGGTTATA
65 TTTTG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTACA
*
43342560 GAATCAAATATA
127 GAATCAAAGATA
* * * * *
43342572 AAATATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCTTGTGATGCATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* * * *
43342637 TTTATGATATTTTTGAATTTTATTTTTAAATATTAAAATATGAATTTCGAGGCAATGTCGATTAC
65 TTT-TGAT-TTTTTTAATTTCATTTTTAAATATTAAAAT-TCAATTTCGAGGCAA-GTCGGTTAC
43342702 AGAATCAAAGATA
126 AGAATCAAAGATA
* * ***
43342715 AAGTATAAATTTTTAGGAGGTTAAAATAGAAATTTACCATGTGATGCATACCGAAGTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * *
43342780 CTTATGATTCTTTTGAATTTCATTTTGAAAAATTGAAATTCGAAATTT-GAGTTG-AAGTCCGTT
66 -TT-TGATT-TTTTTAATTTCATTTTTAAATATTAAAATTC--AATTTCGAG--GCAAGTCGGTT
* **
43342843 AC-GCAATTATGGATA
124 ACAG-AATCAAAGATA
* * * * * **
43342858 GAGTATAAACTTTTAAGAGGTTAAAATGGGAACTTATCATGTGATGCATAGAAAAGTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* * * * * * *
43342923 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTCAATGCAACATCAGTTACA
65 TTT-TGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTACA
* *
43342988 GAATAAAAGTTA
127 GAATCAAAGATA
* * *
43343000 AAGTATAAATTTTTAAGAGGTTAAGATAGAAATTTATCATGTGATGCATAGCAAAA-TT-TTCGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-AAAAGTTCTT-GT
* * * **
43343063 GTTTT-ATGATTTCTTATATTTCATTTTTAATTATTAAAATTCAAATTTCGAGACAAAGTCAATT
64 GTTTTGAT--TTTTTTA-ATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGC-AAGTCGGTT
*
43343127 AC-G----GAAGATA
124 ACAGAATCAAAGATA
* * * **
43343137 AAGTATACAA-TTTTAAGAGTTTTAAATGGAAATTTACAATGTGATGCATAGTGGAA-TTCTTGT
1 AAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-AAAAGTTCTTGT
* * * * *
43343200 GTCTTATGACTGTTTTTAATTT-ATTTTTAAATATTGAAACTTGAATTTTGAGGCTAACTTC-GT
64 GT-TT-TGA-TTTTTTTAATTTCATTTTTAAATATT-AAAATTCAATTTCGAGGC-AA-GTCGGT
* *
43343263 TACGGAATTAAAGATA
123 TACAGAATCAAAGATA
* * ** ** **** * **
43343279 AAGTATAAATTTGTAAGAGGTTAAAATGGATATTTAAAATG-GAT-TTTTTTTAATTTC-ACT-T
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
** * ** * * *
43343340 TTAAATATTAAAATTTGAATTTCATGGTCAAGTCAATTATAGAA-TCGAATAT--A---AAGT--
66 TTTGAT-TT----TTTTAATTTCATTTTTAAAT--ATTA-A-AATTC-AATTTCGAGGCAAGTCG
* * *** * *
43343397 -ATAAATTTTTAAGAGGTTA
121 GTTACAGAATCAA-A-GATA
*** ** * * * * * * * ** ** * * *
43343416 AAGCGGAAATTTACATG-TGTT-ACATAGAAAACTT--CTTGTGTTTTAT-G---CTTTTTTTTA
1 AAGTATAAATTTTTAAGAGGTTAAAAT-GGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG
* * * * ** * * * *
43343473 ATTTCA-TTTTTAAATATTAAAATTT-GA-A-T----TTC-A-----AGGTAACGTCGATTATAG
65 TTTTGATTTTTTTAAT-TTCATTTTTAAATATTAAAATTCAATTTCGAGGCAA-GTCGGTTACAG
*
43343524 AGTCAAAGATA
128 AATCAAAGATA
* * * * * * * *
43343535 GAGTATAAATTTTAAAGAGGCTAAAATGGAAATTTATCATGTGATGTATAG-CAAGCTACTTGTA
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAG-TTCTTGTG
* * * * *
43343599 TTTT-ATAACTTTTTAATTTGATTTTTAAATATTAAAATTCGAATTTCGAGACCAAGTCAGTTAG
65 TTTTGAT--TTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAG-GCAAGTCGGTTAC
43343663 AGAATCAAAGATA
126 AGAATCAAAGATA
* * ** *
43343676 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATACATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * * **
43343741 CTTATGATTGTTTTCAATTT-A-TTTTAAGATTTTGAAACTCAAACTTT-GAGGCAAACTCCATT
66 -TT-TGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTC-AA-TTTCGAGGC-AAGTCGGTT
* *
43343803 ACGGAATTAAAGATA
124 ACAGAATCAAAGATA
* * * ** *
43343818 AAGTGTAAATTTTTAAGTGGTTAAAAT-----TCT-CC-TGT--TTTAT-G---A-TTCTT-TAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * ** * * ** * * *** * *** *
43343868 AATTTCA-TTTTTAAATATTAAAATTTGAAT-TT-CAAGGCAACGTTGGTTACAGAATCAAATAT
66 --TTTGATTTTTTTAAT-TTCATTTTTAAATATTAAAATTCAA-TTTCGAGGCA-AGTCGGTTAC
*
43343930 A-AAGT-ATAGAT-
126 AGAA-TCAAAGATA
** * ** * ** * ****
43343941 -TTTTTAAGA-GGTTAAAATGG---AAATTTACCA--T---ATGGTGCATAGC---GAAGTTCTC
1 AAGTATAA-ATTTTTAAGA-GGTTAAAATGGA-AATTTACCAT-GTG-AT-GCATAGAAAAGTTC
** * * * * * * * *
43343993 AAGTCTTATGATTCTTTTTAATTTCATTTTTAAGTATTGAAACTCAAATTTTGAGTCAAAGTCCG
60 TTGTGTTTTGATT-TTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGC-AAGTCGG
* * *
43344058 TTACGGAATTATAGATA
122 TTACAGAATCAAAGATA
* * ***
43344075 AAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGAGATGCATAGAAAACCACTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * *
43344140 TTTGCGCTTTTTTTAATTTTATTTTAAAATATTAAAATTCAAATTTTGAGGCAACTTCGGTTACA
66 TTT--GATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTACA
*
43344205 GAATAAAAGATA
127 GAATCAAAGATA
* * * * * * *
43344217 AAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTATCATGTGATACATTGCAAACTTCTCGTGC
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
*
43344282 TTTATGATTTATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAAGTCGGTT
65 TTT-TGA--T-TTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCGAGG-CAAGTCGGTT
*
43344347 ATAGAATCAAAGATA
124 ACAGAATCAAAGATA
* * * * *
43344362 AAGTATTAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATTCATAGAGAAA-TTCTGGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGA-AAAGTTCTTGTG
* * * * * * *
43344426 TCTTATGA-TTTTTTAATTT-ATTTTTAAATTTTGAAACTCGAATTTTGAGGCGAACTCCGTTAT
65 T-TT-TGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGC-AAGTCGGTTAC
* *
43344489 GGAATTAAAGATA
126 AGAATCAAAGATA
* * * * * *
43344502 AAGTATAAATTTTTAAGTGGTTAAAATGAAAACTTACCTTCTGATGCATAGAAAACTTCTCT-TG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCT-TGTG
* * * *
43344566 TTTTATGATTTTTTATAATTTCATTTTTAAACATTAAAATTTGAATTTCGAGGCAACATCTGTTA
65 -TTT-TGATTTTTT-TAATTTCATTTTTAAATATTAAAA-TTCAATTTCGAGGCAA-GTCGGTTA
* *
43344631 TAGAATCAAATATA
125 CAGAATCAAAGATA
* * *** *
43344645 AAGTATAAATTTTTAAGAGGTGAAAATGGAAATTTACCATGTGATGCATAGCATCCTTCTCGTGA
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
*
43344710 TTTATGATTGTTTTTAATTTCATTTTTAAATATTAAAATTCAATTTTCTAGGCAAAGTCGGTTA-
65 TTT-TGATT-TTTTTAATTTCATTTTTAAATATTAAAATTCAA-TTTCGAGGC-AAGTCGGTTAC
*
43344774 AGAAATCAAAGACA
126 AG-AATCAAAGATA
* * * * * ** *
43344788 CAGTATAAATTTTTAAGAGATTAAGATGGAAATTTACAATGTGTTGCATAGCGAAGTTCTAGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * * ** *
43344853 CTTGTGAATCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGTTCAAGTCCATTAT
66 -TT-TG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAG-GCAAGTCGGTTAC
* * * *
43344918 GGAATTATATATA
126 AGAATCAAAGATA
* * * * **
43344931 AAATATAAACTTTTAAGAGGTTAAAATGGAAACTTACCATGTGATGCATAGAAAACTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * ** **
43344996 TTTCCGCTTTTTGTAATTTTATTTTTAAATATTAAAATTCGAGTTTTAAGGCAACGTTAGTTACA
66 TTT--GATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTACA
*
43345061 AAATCAAAGATA
127 GAATCAAAGATA
* ** * *
43345073 AAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGCATAGTGATGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * * *
43345138 CTTATGAATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGGGGCAAAGTTC-GTTA
66 -TT-TG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGC-AAG-TCGGTTA
* *
43345202 C-GAAATTATAGATA
125 CAG-AATCAAAGATA
* *
43345216 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* *
43345281 TCTATGCTTTTTTTATTTATTTCA-TTTTAAATTATTAAAATTCGAATTTC-AGGGCAATGTCGA
66 T-T-TGATTTTTTTA---ATTTCATTTTTAAA-TATTAAAATTC-AATTTCGA-GGCAA-GTCGG
43345344 TTACAGAATCAAAGATA
122 TTACAGAATCAAAGATA
* * * * * * *
43345361 AAGTATAAATTTTAAAGAGGCTAAAATAGAAATTTATCATATGATGCATAG-CAAGCTTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAG-TTCTTGTG
* * * * *
43345425 TTTT-ATGATTTTTAATTTGATTTTTAAATATTAAAATTCTAAATAT-AAGGCAACGTTGGTTAC
65 TTTTGAT-TTTTTTAATTTCATTTTTAAATATTAAAATTC--AATTTCGAGGCAA-GTCGGTTAC
43345488 AGAATCAAAGATA
126 AGAATCAAAGATA
* * ** ** *
43345501 AAGTACAAATTTTTAAGAGGTTAAAATGAAAATTTATAATGTGATGCATAGCGAAGTTCTCGTGG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGT-G
* * * * * * *
43345566 CTTATGATTGTTTTTAATTT-A-TTTTAAGATTTTGAAACTCGAA-TTCTGAGTCAAACTCCGTT
65 -TTTTGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTC-AATTTC-GAGGC-AAGTCGGTT
* *
43345628 ACGGAATTAAAGATA
124 ACAGAATCAAAGATA
* * *
43345643 AAGTATAAATTTTTAAGTGGTTAAAATTGAAATTTACCATGTGATGCATAGAAAACTTCTCATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCT--TGT
* * * * *
43345708 -TTTATGATTTTTTATAATATCATTTTAAAATTTTAAAATTCGAATTTCGAGGCAACTTCGGCTA
64 GTTT-TGATTTTTT-TAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTA
* *
43345772 CAGAATGAAATATA
125 CAGAATCAAAGATA
* * * * * * *
43345786 AAGTATAATTTTTTAAGTGGTTAAAATGGAAATTTACCTTGTGATGCATAGCAAACTTGTCGTGA
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* * * *
43345851 TTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTTGATTTTCTAAGCGAAGTCGGTTAC
65 TTT-TGA-TTTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCGAGGC-AAGTCGGTTAC
43345916 AGAATCAAAGATA
126 AGAATCAAAGATA
* * * *
43345929 CAA-TATAAATTTTTAAGAGGTTAATATGGAAATTTACAATGTGATGCATAGTGAAGTACTTCTT
1 -AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA--GAA-AAGTTCTT
* * * * * *
43345993 GTGTCTTATTAATCTTTTTAATTTCATTTTTAAATATTGATACTCAAATTTCGAGGCGAAGTCCG
62 GTG--TT-TTGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGC-AAGTCGG
43346058 TTACAGAATCAAAGATA
122 TTACAGAATCAAAGATA
* * * * **
43346075 AAGTATAAATTTTTAAGAGGTTAAATTAGAAATTTACCATGTGATGCGTAGAAAACTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * * **
43346140 TTTGCGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTTAAGGCAACGTCGGTTACA
66 TTT--GATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTACA
*
43346205 GAGTCAAAGATA
127 GAATCAAAGATA
* * * * ** * *
43346217 GAGTATAAGTTTTTAAGAGGTTAGAAA-GGAAGTTTGCCATGTGATGCATAGCGATGTTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTA-AAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG
* ** * *
43346281 TCTTATGAGTCTTTTTAATTTCATTTTTAAATATTGAAACA-AGAATTTTGGGGCAAAGTTC-GT
65 T-TT-TGA-TTTTTTTAATTTCATTTTTAAATATT-AAA-ATTCAATTTCGAGGC-AAG-TCGGT
* *
43346344 TACAGAATTATAGATA
123 TACAGAATCAAAGATA
* * * * *
43346360 AAGTATATATTTTTAAGAGGTTAAAATGAAAATTTACTATGTGATGCGTAGAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* *
43346425 TTTATGTTTTTTTTTATTTCATTTTTAAATATTAAAATTCAAATTT-GAAGGCAACGTCGGTTAC
65 TTT-TGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCG-AGGCAA-GTCGGTTAC
43346489 AGAATCAAAGATA
126 AGAATCAAAGATA
* * * * * *
43346502 AAGTATAAATTTTAAAGATGTTAAAATAGAAATTTATCATGTGATGCATAG-CAAGCTTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAG-TTCTTGTG
* * ** *
43346566 TTATATGA-TTTTTTAATTTGATTTTTAAATATTAAAACTCGAATTTCGAGGCCAAGTTAGTTAG
65 TT-T-TGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGG-CAAGTCGGTTAC
43346630 AGAATCAAAGATA
126 AGAATCAAAGATA
* * ** * ** *
43346643 GAA-TATAATTTTTTAATAGGTTAAAATGGAAATTTATAATGAGATGCATAGCGAAGTTCTCGTG
1 -AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG
* * * * * * *
43346707 CCTTATGATTGTTTTTAATTT-ATTTTTAGATTTTGAAACTCGAATTTTGAGGCGAA--CTGTTA
65 --TTTTGATT-TTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGC-AAGTCGGTTA
* *
43346769 CTGAATTAAAGATA
125 CAGAATCAAAGATA
* * * * * *
43346783 AAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGGGATGTATATAAAACTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG-
* * * * **
43346848 TTTATGATATTTTTATAATTTCAATTTTAAATAGTAAATTTCGAATTTTGAGGCAACGTTAGTTA
65 TTT-TGAT-TTTTT-TAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGGCAA-GTCGGTTA
43346913 CAGAATCAAAG-TA
125 CAGAATCAAAGATA
* * * * * * *
43346926 AAGTATAAATTTTT-AGTGGTTAAAATAGAAATTTATCATGTGATGCGTAGCATAGTTCTCACGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCT--TGT
* * *
43346990 -TTTATGATTTTTTTAATTTCATTTTTAAGTATTAAAATTCAAATTTTGAGGCCAAGTCGATTAC
64 GTTT-TGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGG-CAAGTCGGTTAC
43347054 AGAATCAAAGATA
126 AGAATCAAAGATA
* * ** *
43347067 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATGGCGAAGTTCTCGTCT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCT--TGT
* * * * * * * * *
43347132 GTTATGATTGTTTTCAATTTCATTTTTGAATATTGAAACTCGAATTTTGAGGTGAAGCCCGTTAC
64 GTTTTGATT-TTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCGAGG-CAAGTCGGTTAC
* *
43347197 GGAATGAAAGA-A
126 AGAATCAAAGATA
* * * * * * ***
43347209 AATATATAAATTTTTAAGTGGTTAAAATGAAAATTTACAATGTGATGCATGGAAAACTAAATGTG
1 AA-GTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTG
* * * * * * *
43347274 TTTTGCGTTTTTTTTTTAATTTTATTTTTAAATGTTAAAATTTGAAATTCGAGGCAACCTCGATT
65 TTTT--G--ATTTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCGAGGCAA-GTCGGTT
*
43347339 ACAGAATTAAAGATA
124 ACAGAATCAAAGATA
* * * * * * * *
43347354 AAATATAAATTTTTAAGAGGTTTAGAT-GAAAGTTTATCATGTGATGCATAGCAAATTTGTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAA-TTTACCATGTGATGCATAGAAAAGTTCTTGTG
* * ** *
43347418 TTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATGTCAAAGTAAAGTCAGTTA
65 -TTT-TGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTC-GAGGCAAGTCGGTTA
*
43347483 CAAAATCAAAGATA
125 CAGAATCAAAGATA
** * * * ** *
43347497 AAGTATAAATTTTTAAGAGGTTAAAATAAAAATTTACAATGTAATGTATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
* * *
43347562 CTTATAATTGTTTTTAATAT-ATTTTTAAATATTGAAATT
66 -TT-TGATT-TTTTTAATTTCATTTTTAAATATTAAAATT
43347601 GACAAACTCT
Statistics
Matches: 5641, Mismatches: 1153, Indels: 762
0.75 0.15 0.10
Matches are distributed among these distances:
114 1 0.00
117 3 0.00
118 2 0.00
119 15 0.00
120 13 0.00
121 9 0.00
122 17 0.00
123 5 0.00
124 17 0.00
125 21 0.00
126 14 0.00
127 14 0.00
128 24 0.00
129 9 0.00
130 12 0.00
131 11 0.00
132 19 0.00
133 15 0.00
134 11 0.00
135 24 0.00
136 16 0.00
137 106 0.02
138 24 0.00
139 27 0.00
140 417 0.07
141 577 0.10
142 1457 0.26
143 1832 0.32
144 326 0.06
145 242 0.04
146 233 0.04
147 4 0.00
148 3 0.00
149 2 0.00
150 117 0.02
151 2 0.00
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.39
Consensus pattern (138 bp):
AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAAGTTCTTGTGT
TTTGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAATTTCGAGGCAAGTCGGTTACAGAAT
CAAAGATA
Found at i:43341067 original size:285 final size:281
Alignment explanation
Indices: 43340285--43347600 Score: 4649
Period size: 285 Copynumber: 25.9 Consensus size: 281
43340275 AGTGACCATC
** * *
43340285 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAAAATGTG-TGCATAGCGAAA-TTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-AAAACTTCTTGTG
* * * *
43340348 TCTTATG-ATTTTTTTAA-TTTATTTTTAAATATTGAAACTCAAATTTTGAGGCAAAC-TCCGTT
65 T-TT-TGTATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGC-AACGTCGGTT
* * * * *
43340410 ACGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCTTGTGTTGCATA
126 ACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* * ** * * * *
43340475 GAAAACTTCTATTGTTTTATGAAT-TTTTATAATTTCATTTTTAAATATAAAAATTCAAATTTCA
191 GCAAAGTTCTCGTGTCTTATGAATCTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCG
* * *
43340539 AGGCAATGTCGGTTACAGAATCAAATATA
255 AGG-AA-GTCCGTTACGGAATCAAAGATA
43340568 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATATTGCATAGCAAACTT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA--G---A--AAACTT
* * * * *
43340633 CTTGTGATTTATG-ATTTTTTTTAATTTCATTTTTAAATGTTAAAATTCGATTTTCTAGGCAAAG
59 CTTGTG-TTT-TGTA-TTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGCAACG
* * ** * ** * *
43340697 TCAGTTACAAAATCAAAGATACTGTATAATTTTTTAAGAGACTAAGATGGAAATTTACAATGTGA
120 TCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA
* * *
43340762 TGCATAGCGAAGTTCTCGTGTCTTATGAATCTTTTTAATTACATTTTTAAATATTAAAACTCGAA
185 TGCATAGCAAAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAA
* * *
43340827 TTTTGAGTTGAAGTCCGTTACGGAATTATAGATA
250 TTTCGAG--GAAGTCCGTTACGGAATCAAAGATA
* ** *
43340861 AAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
** *
43340926 TTTGTACTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAGTTTCGAAACAACTTCGGTTACA
66 TTTGTA-TTTTTTTAATTTTATTTTTAAATATTAAAATTCAA-TTTCGAGGCAACGTCGGTTACA
* * * * * *
43340991 AAATCAAAGTTAAAGTATAAATTTATAAGAGGTTAAAAAGGAAGTTTACCATGTGATGCATAGCG
129 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCA
* * * * * * *
43341056 AAGTTCTCGTGTCTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGAA
194 AAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAG-G
** * *
43341121 AATGTTTGTTACGGAATTATAGATA
258 AA-GTCCGTTACGGAATCAAAGATA
*
43341146 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTG-
* ** * *
43341211 TTTATGCTTCTTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAATTTTAAGTCAACGTCGAT
65 TTT-TG--T-ATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGCAACGTCGGT
* * *
43341276 TACAGAATCAAAGATAAAGTATAAATTTTAAAGAGGTTAAAATGAAAATTTATCATGTGATGCAT
125 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* *
43341341 AGC-AAGCTTCTCGTGT-TATATG-AT-TTTCTAATTTGATTTTTAAATATTAAAATTCGAATTT
190 AGCAAAG-TTCTCGTGTCT-TATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTT
* *** *
43341402 CGACGCCAAGTCTAATA-GAGAATCAAAGTTA
253 CGA-G-GAAGTCCGTTACG-GAATCAAAGATA
* * * * * ** * *
43341433 GAGTATAAATTTATAAGAGGTTAAAATGGAGACTTACAATGTGATGCATAGCTAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * * *
43341498 CTTATG-ATTGTTTTAAATTTA-TTTTAAGATTTTGAAACTCGAATTTTC-AGGCGAAC-TCCGT
66 -TT-TGTATTTTTTTAATTTTATTTTTAA-ATATTAAAATTC-AA-TTTCGAGGC-AACGTCGGT
* * ** *
43341559 TAC-GAAATTAAAGTTAAAGTATAAATTTTTAATTGGTTAAAATGGAAATTTACCATGTAATGCA
125 TACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
** * * * * *
43341623 TATAAAACTTCTCGTGTTTTATG-ATTTTTTGTAATTTCATTTTTAGATATTAAAATTTGAATTT
189 TAGCAAAGTTCTCGTGTCTTATGAATCTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTT
* ** *
43341687 AGAGGCAACGTTGGTTAAC-GAAT-AAGAAATA
253 CGAGG-AA-GTCCGTT-ACGGAATCAA-AGATA
* * * * * * * *
43341718 AAGTTTGAATTTTTAAGAGGTTAAAATGGAAATTTATCATGGGATACATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * **
43341783 TTTATGATTTTTTTTAAATTTCATTTTTAAATATTAAAATTCGAATTTCAAAGCCAA-GTCAATT
66 TTTGT-A-TTTTTTT-AATTTTATTTTTAAATATTAAAATTC-AATTTC-GAGGCAACGTCGGTT
** *
43341847 TGAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATA
126 ACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* * * * * * * *
43341912 GCGAAGTTCTCGTGTCTTATGATTGTCTTTAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTG
191 GCAAAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAA-ATATTAAAATTCGAATTTCG
* *
43341975 AGGCAAACTCCGTTACGGAATTAAAGATA
255 AGG--AAGTCCGTTACGGAATCAAAGATA
* * * * * * *
43342004 GAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTATCATATGATGCATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * * *
43342069 TTTATGAGTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAA-GTCGATTAT
66 TTTGT-ATTTTTTTAATTTTATTTTTAAATATTAAAA-TTCAATTTCGAGG-CAACGTCGGTTAC
* * * * **
43342133 AGAATCAAAGATAAAGTATAAATTTGTAAGAGGTTAAAATGGATATTTACAATGCGATGTGTAGC
128 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * *
43342198 AAAGTTCTCGTGTCTTATGATTCTTTTTAATTTCATTTTCAAATATT-AAATTACGAAATTCGAG
193 AAAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATT-CGAATTTCGA-
* *
43342262 GTGAAGTCAGTTATAGG-ATCAAAGATA
256 G-GAAGTCCGTTA-CGGAATCAAAGATA
* * * ** *
43342289 AAGTATAATTTTTTAAGAGATTAAAATGAAAATTTACCATGTGATGCATAGCGAAGTTCTCATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCT--TGT
* * * * * *
43342354 CTTATG-ATTCTTTTTAATTTCATTTTTAAATATTGAAACTCCAATTT-GACTTG-AA-GTCCGG
64 GTTTTGTATT-TTTTTAATTTTATTTTTAAATATT-AAAATTCAATTTCGA--GGCAACGT-CGG
* * * *
43342415 -TACGGAATTATAA-ATAAAGTATAAACTTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGC
124 TTACAGAATCA-AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* * * ** * *
43342478 ATAGAAAACTAT-TAGTGT-TT-TG-CGCTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGT
188 ATAGCAAAGT-TCTCGTGTCTTATGAATC-TTTTTAATTTCATTTTTAAATATTAAAATTCGAAT
* * ** *
43342539 TTGGAGGCAACGTCGGTTATAGAATCAAATATA
251 TTCGAGG-AA-GTCCGTTACGGAATCAAAGATA
* * * * * *
43342572 AAATATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCTTGTGATGCATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * *
43342637 TTTATGATATTTTTGAATTTTATTTTTAAATATTAAAATATGAATTTCGAGGCAATGTCGATTAC
66 TTTGT-AT-TTTTTTAATTTTATTTTTAAATATTAAAAT-TCAATTTCGAGGCAACGTCGGTTAC
* * *
43342702 AGAATCAAAGATAAAGTATAAATTTTTAGGAGGTTAAAATAGAAATTTACCATGTGATGCATACC
128 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * * * * *
43342767 GAAGTTCTTGTGTCTTATGATTCTTTTGAATTTCATTTTGAAAAATTGAAATTCGAAATTT-GAG
193 AAAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCG-AATTTCGAG
* * **
43342831 TTGAAGTCCGTTACGCAATTATGGATA
257 --GAAGTCCGTTACGGAATCAAAGATA
* * * * * * **
43342858 GAGTATAAACTTTTAAGAGGTTAAAATGGGAACTTATCATGTGATGCATAGAAAAGTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * * *
43342923 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTCAATGCAACATCAGTTACA
66 TTTGT-ATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGCAACGTCGGTTACA
* * * * *
43342988 GAATAAAAGTTAAAGTATAAATTTTTAAGAGGTTAAGATAGAAATTTATCATGTGATGCATAGCA
129 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCA
* * * * * *
43343053 AAATTTTCGTGTTTTATG-AT-TTCTTATATTTCATTTTTAATTATTAAAATTCAAATTTCGAGA
194 AAGTTCTCGTGTCTTATGAATCTTTTTA-ATTTCATTTTTAAATATTAAAATTCGAATTTCGAG-
* **
43343116 CAAAGTCAATTACGG-----AAGATA
257 -GAAGTCCGTTACGGAATCAAAGATA
* * * **
43343137 AAGTATACAA-TTTTAAGAGTTTTAAATGGAAATTTACAATGTGATGCATAGTGGAA-TTCTTGT
1 AAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-AAAACTTCTTGT
* * * * *
43343200 GTCTTATG-ACTGTTTTTAA-TTTATTTTTAAATATTGAAACTTGAATTTTGAGGCTAACTTC-G
64 GT-TT-TGTA-TTTTTTTAATTTTATTTTTAAATATT-AAAATTCAATTTCGAGGC-AACGTCGG
* * * * ** **
43343262 TTACGGAATTAAAGATAAAGTATAAATTTGTAAGAGGTTAAAATGGATATTTAAAATG-GAT-TT
124 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
**** * * * * ** * ** * ** * *
43343325 TTTTTAATTTCACTTTTAAATATTAA-AATTTGAATTTCATGGTCAAGTCAATTATAGAA-TCGA
189 TAGCAAAGTTCTCGTGT-CTTATGAATCTTTTTAATTTCATTTTTAAAT--ATTA-A-AATTCGA
* * ***** * *
43343388 ATAT--A--AAGT---ATAAATTTTTAAGAGGTTA
249 ATTTCGAGGAAGTCCGTTACGGAATCAA-A-GATA
*** ** * * * * * * * **
43343416 AAGCGGAAATTTACATG-TGTT-ACATAGAAAACTT--CTTGTGTTTTAT-G----C-T-TT-T-
1 AAGTATAAATTTTTAAGAGGTTAAAAT-GGAAATTTACCATGTGATGCATAGAAAACTTCTTGTG
* ** * * * ** * * * *
43343468 TTTT-AATTTCATT--TTTAAATATTAAA-ATT--TG---AATTTCAAGGTAACGTCGATTATAG
65 TTTTGTATTTTTTTAATTTTATTTTTAAATATTAAAATTCAATTTCGAGGCAACGTCGGTTACAG
* * * * * *
43343524 AGTCAAAGATAGAGTATAAATTTTAAAGAGGCTAAAATGGAAATTTATCATGTGATGTATAGC-A
130 AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAA
* * * * *
43343588 AGCTACTTGTATTTTAT-AA-CTTTTTAATTTGATTTTTAAATATTAAAATTCGAATTTCGAGAC
195 AG-TTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAG--
* *
43343651 CAAGTCAGTTA-GAGAATCAAAGATA
257 GAAGTCCGTTACG-GAATCAAAGATA
* * ** * *
43343676 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATACATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * **
43343741 CTTATG-ATTGTTTTCAA-TTTA-TTTTAAGATTTTGAAACTCAAACTTT-GAGGCAAAC-TCCA
66 -TT-TGTATT-TTTTTAATTTTATTTTTAA-ATATTAAAATTC-AA-TTTCGAGGC-AACGTCGG
* * * * * **
43343801 TTACGGAATTAAAGATAAAGTGTAAATTTTTAAGTGGTTAAAAT-----TCT-CC-TGT--TTTA
124 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
* * * * * * *
43343857 T-G---A-TTCT--T-TATAAT--TTCATTTTTAA----ATATTAAAAT-TTGAATTTC-AA---
189 TAGCAAAGTTCTCGTGTCTTATGAATC-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTT
* ** * *
43343903 -G-GCAACGTTGGTTACAGAATCAAATATA
253 CGAGGAA-GTCCGTTACGGAATCAAAGATA
* * * ** * *
43343931 AAGTATAGATTTTTTAAGAGGTTAAAATGGAAATTTACCATATGGTGCATAGCGAAGTTCTCAAG
1 AAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCT--TG
* * * * * * * * * *
43343996 TCTTATG-ATTCTTTTTAATTTCATTTTTAAGTATTGAAACTCAAATTTTGAGTCAAAGTCCGTT
63 TGTTTTGTATT-TTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGCAACGTCGGTT
* * * * *
43344060 ACGGAATTATAGATAAAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGAGATGCATA
126 ACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* *** * ** * * * * *
43344125 GAAAACCACTTGTGT-TT-TGCGCTTTTTTTAATTTTATTTTAAAATATTAAAATTCAAATTTTG
191 GCAAAGTTCTCGTGTCTTATG-AATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCG
* * * *
43344188 AGGCAACTTCGGTTACAGAATAAAAGATA
255 AGG-AA-GTCCGTTACGGAATCAAAGATA
* * * * * *
43344217 AAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTATCATGTGATACATTGCAAACTTCTCGTGC
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTG-
* * *
43344282 TTTATGATTTATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAA-GTCGGT
65 TTT-TG-TAT-TTTTTTAATTTTATTTTTAAATATTAAAA-TTCAATTTCGAGG-CAACGTCGGT
* * * * *
43344346 TATAGAATCAAAGATAAAGTATTAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATTCAT
125 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* * * * * *
43344411 AG-AGAAATTCTGGTGTCTTATG-AT-TTTTTAATTT-ATTTTTAAATTTTGAAACTCGAATTTT
190 AGCA-AAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTC
* * *
43344472 GAGGCGAACTCCGTTATGGAATTAAAGATA
254 GA-G-GAAGTCCGTTACGGAATCAAAGATA
* * * * *
43344502 AAGTATAAATTTTTAAGTGGTTAAAATGAAAACTTACCTTCTGATGCATAGAAAACTTCTCT-TG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCT-TGTG
* * * * * *
43344566 TTTTATGATTTTTTATAATTTCATTTTTAAACATTAAAATTTGAATTTCGAGGCAACATCTGTTA
65 TTTTGT-ATTTTTT-TAATTTTATTTTTAAATATTAAAA-TTCAATTTCGAGGCAACGTCGGTTA
* * *
43344631 TAGAATCAAATATAAAGTATAAATTTTTAAGAGGTGAAAATGGAAATTTACCATGTGATGCATAG
127 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
*** * * *
43344696 CATCCTTCTCGTGAT-TTATGATTGTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTTCT
192 CAAAGTTCTCGTG-TCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAA-TTTCG
* * * *
43344759 AGGCAAAGTCGGTTAAGAAATCAAAGACA
255 AGG--AAGTCCGTTACGGAATCAAAGATA
* * * * * ** * *
43344788 CAGTATAAATTTTTAAGAGATTAAGATGGAAATTTACAATGTGTTGCATAGCGAAGTTCTAGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * * * * **
43344853 CTTGTGAATCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGTTCAA-GTCCATTA
66 -TT-TGTATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAG-GCAACGTCGGTTA
** * * * * * *
43344917 TGGAATTATATATAAAATATAAACTTTTAAGAGGTTAAAATGGAAACTTACCATGTGATGCATAG
127 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* * ** * * ** * * * **
43344982 AAAACTAATTGTGTTTTCCG-CT-TTTTGTAATTTTATTTTTAAATATTAAAATTCGAGTTTTAA
192 CAAAGTTCTCGTGTCTTATGAATCTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGA
** **
43345045 GGCAACGTTAGTTACAAAATCAAAGATA
256 GG-AA-GTCCGTTACGGAATCAAAGATA
* ** ** *
43345073 AAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGCATAGTGATGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * * * * *
43345138 CTTATGAATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGGGGCAAAGTTC-GTTA
66 -TT-TGTATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGCAACG-TCGGTTA
* * *
43345202 C-GAAATTATAGATAAAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
127 CAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* * * * *
43345266 GAAAACTTCTTGTGT-TCTATG-CTTTTTTTATTTATTTCA-TTTTAAATTATTAAAATTCGAAT
191 GCAAAGTTCTCGTGTCT-TATGAATCTTTTTA---ATTTCATTTTTAAA-TATTAAAATTCGAAT
*
43345328 TTC-AGGGCAATGT-CGATTACAGAATCAAAGATA
251 TTCGA-GG-AA-GTCCG-TTACGGAATCAAAGATA
* * * * * * * *
43345361 AAGTATAAATTTTAAAGAGGCTAAAATAGAAATTTATCATATGATGCATAGCAAGCTTCTCGTG-
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * *
43345425 TTT-TATGATTTTTAATTTGATTTTTAAATATTAAAATTCTAAATAT-AAGGCAACGTTGGTTAC
66 TTTGTAT-TTTTTTAATTTTATTTTTAAATATTAAAATTC--AATTTCGAGGCAACGTCGGTTAC
* * **
43345488 AGAATCAAAGATAAAGTACAAATTTTTAAGAGGTTAAAATGAAAATTTATAATGTGATGCATAGC
128 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * * * * *
43345553 GAAGTTCTCGTGGCTTATGATTGTTTTTAATTT-A-TTTTAAGATTTTGAAACTCGAA-TTCTGA
193 AAAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAA-ATATTAAAATTCGAATTTC-GA
* * *
43345615 GTCAAACTCCGTTACGGAATTAAAGATA
256 G--GAAGTCCGTTACGGAATCAAAGATA
* * **
43345643 AAGTATAAATTTTTAAGTGGTTAAAATTGAAATTTACCATGTGATGCATAGAAAACTTCTCATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * * * * * *
43345708 TTTATGATTTTTTATAATATCATTTTAAAATTTTAAAATTCGAATTTCGAGGCAACTTCGGCTAC
66 TTTGT-ATTTTTT-TAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGCAACGTCGGTTAC
* * * * *
43345773 AGAATGAAATATAAAGTATAATTTTTTAAGTGGTTAAAATGGAAATTTACCTTGTGATGCATAGC
128 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * * * * *
43345838 AAACTTGTCGTGAT-TTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTTGATTTTCTAA
193 AAAGTTCTCGTG-TCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTC-GA
* *
43345902 GCGAAGTCGGTTACAGAATCAAAGATA
256 G-GAAGTCCGTTACGGAATCAAAGATA
* * *
43345929 CAA-TATAAATTTTTAAGAGGTTAATATGGAAATTTACAATGTGATGCATAGTGAAGTACTTCTT
1 -AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA--GAA-AACTTCTT
* * * * *
43345993 GTGTCTTAT-TAATCTTTTTAATTTCATTTTTAAATATTGATACTCAAATTTCGAGGCGAA-GTC
62 GTGT-TT-TGT-ATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGC-AACGTC
* * *
43346056 CGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAATTAGAAATTTACCATGTGATG
122 GGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * * ** * ** * * *
43346121 CGTAGAAAACTAATTGTGT-TT-TGCGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGT
187 CATAGCAAAGTTCTCGTGTCTTATG-AATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAAT
** * * *
43346184 TTTAAGGCAACGTCGGTTACAGAGTCAAAGATA
251 TTCGAGG-AA-GTCCGTTACGGAATCAAAGATA
* * * * ** ** *
43346217 GAGTATAAGTTTTTAAGAGGTTAGAAA-GGAAGTTTGCCATGTGATGCATAGCGATGTTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTA-AAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTG
* * ** * * *
43346281 TCTTATG-AGTCTTTTTAATTTCATTTTTAAATATTGAAACA-AGAATTTTGGGGCAAAGTTC-G
65 T-TT-TGTA-TTTTTTTAATTTTATTTTTAAATATT-AAA-ATTCAATTTCGAGGCAACG-TCGG
* * * * * *
43346343 TTACAGAATTATAGATAAAGTATATATTTTTAAGAGGTTAAAATGAAAATTTACTATGTGATGCG
124 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
* * * * * * * *
43346408 TAGAAAACTTCTTGTGTTTTATG-TTTTTTTTTATTTCATTTTTAAATATTAAAATTCAAATTT-
189 TAGCAAAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTC
* *
43346471 GAAGGCAACGTCGGTTACAGAATCAAAGATA
254 G-AGG-AA-GTCCGTTACGGAATCAAAGATA
* * * * * * *
43346502 AAGTATAAATTTTAAAGATGTTAAAATAGAAATTTATCATGTGATGCATAGCAAGCTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
* * **
43346567 TATATG-A-TTTTTTAATTTGATTTTTAAATATTAAAACTCGAATTTCGAGGCCAA-GTTAGTTA
66 T-T-TGTATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGG-CAACGTCGGTTA
* * * ** *
43346629 GAGAATCAAAGATAGAA-TATAATTTTTTAATAGGTTAAAATGGAAATTTATAATGAGATGCATA
127 CAGAATCAAAGATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* * * * * * * * *
43346693 GCGAAGTTCTCGTGCCTTATGATTGTTTTTAATTT-ATTTTTAGATTTTGAAACTCGAATTTTGA
191 GCAAAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGA
* * *
43346757 GGCGAA--CTGTTACTGAATTAAAGATA
256 -G-GAAGTCCGTTACGGAATCAAAGATA
* * * * *
43346783 AAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGGGATGTATATAAAACTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTG-
* * * * * * **
43346848 TTTATGATATTTTTATAATTTCAATTTTAAATAGTAAATTTCGAATTTTGAGGCAACGTTAGTTA
65 TTT-TG-TATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGCAACGTCGGTTA
* * * *
43346913 CAGAATCAAAG-TAAAGTATAAATTTTT-AGTGGTTAAAATAGAAATTTATCATGTGATGCGTAG
127 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* ** * * * * *
43346976 CATAGTTCTCACGTTTTATG-ATTTTTTTAATTTCATTTTTAAGTATTAAAATTCAAATTTTGAG
192 CAAAGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAG
*
43347040 GCCAAGT-CGATTACAGAATCAAAGATA
257 G--AAGTCCG-TTACGGAATCAAAGATA
* * ** * *
43347067 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATGGCGAAGTTCTCGTCT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCT--TGT
* * * * * * * * * *
43347132 GTTATG-ATTGTTTTCAATTTCATTTTTGAATATTGAAACTCGAATTTTGAGGTGAA-GCCCGTT
64 GTTTTGTATT-TTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGG-CAACGTCGGTT
* * * * * *
43347195 ACGGAATGAAAGA-AAATATATAAATTTTTAAGTGGTTAAAATGAAAATTTACAATGTGATGCAT
126 ACAGAATCAAAGATAAA-GTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* * * ** * ** ** * * * * *
43347259 GGAAAACTAAAT-GTGTTTTGCGTTTTTTTTTTAATTTTATTTTTAAATGTTAAAATTTGAAATT
190 AGCAAAGT-TCTCGTGTCTTATG-AATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTT
* * *
43347323 CGAGGCAA-CCTCGATTACAGAATTAAAGATA
253 CGAGG-AAGTC-CG-TTACGGAATCAAAGATA
* * * * * * * *
43347354 AAATATAAATTTTTAAGAGGTTTAGAT-GAAAGTTTATCATGTGATGCATAGCAAATTTGTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAA-TTTACCATGTGATGCATAGAAAACTTCTTGTG
* * * * * * * *
43347418 TTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATGTCAAAGTAAAGTCAGTTA
65 TTTTGT-A-TTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCGAGGCAACGTCGGTTA
* ** * * *
43347483 CAAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATAAAAATTTACAATGTAATGTATAG
127 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* * * *
43347548 CGAAGTTCTCGTGTCTTAT-AATTGTTTTTAATAT-ATTTTTAAATATTGAAATT
192 CAAAGTTCTCGTGTCTTATGAA-TCTTTTTAATTTCATTTTTAAATATTAAAATT
43347601 GACAAACTCT
Statistics
Matches: 5597, Mismatches: 1097, Indels: 676
0.76 0.15 0.09
Matches are distributed among these distances:
252 2 0.00
253 8 0.00
254 7 0.00
255 30 0.01
256 136 0.02
257 73 0.01
258 15 0.00
259 4 0.00
260 14 0.00
261 12 0.00
262 20 0.00
263 26 0.00
264 7 0.00
265 2 0.00
266 10 0.00
267 10 0.00
268 1 0.00
269 6 0.00
270 3 0.00
271 4 0.00
272 4 0.00
273 5 0.00
274 16 0.00
275 13 0.00
276 14 0.00
277 15 0.00
278 39 0.01
279 148 0.03
280 31 0.01
281 106 0.02
282 198 0.04
283 654 0.12
284 478 0.09
285 1548 0.28
286 631 0.11
287 586 0.10
288 237 0.04
289 235 0.04
290 16 0.00
291 15 0.00
292 12 0.00
293 199 0.04
294 6 0.00
295 1 0.00
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.39
Consensus pattern (281 bp):
AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
TTTGTATTTTTTTAATTTTATTTTTAAATATTAAAATTCAATTTCGAGGCAACGTCGGTTACAGA
ATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAA
GTTCTCGTGTCTTATGAATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGAAG
TCCGTTACGGAATCAAAGATA
Found at i:43349392 original size:15 final size:15
Alignment explanation
Indices: 43349372--43349401 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
43349362 GTATCCATCT
43349372 CTCCTCCTCCTCGTC
1 CTCCTCCTCCTCGTC
43349387 CTCCTCCTCCTCGTC
1 CTCCTCCTCCTCGTC
43349402 ATCATCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.60, G:0.07, T:0.33
Consensus pattern (15 bp):
CTCCTCCTCCTCGTC
Found at i:43354131 original size:23 final size:25
Alignment explanation
Indices: 43354096--43354142 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
43354086 TTTAGGTGAT
43354096 TTAACAAATAATATAAAT-TTAAATG
1 TTAACAAATAATA-AAATATTAAATG
43354121 TTAA-AAA-AATAAAATATTAAAT
1 TTAACAAATAATAAAATATTAAAT
43354143 AAAAAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 4 0.19
23 10 0.48
24 3 0.14
25 4 0.19
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (25 bp):
TTAACAAATAATAAAATATTAAATG
Found at i:43364275 original size:50 final size:50
Alignment explanation
Indices: 43364135--43364383 Score: 238
Period size: 50 Copynumber: 4.9 Consensus size: 50
43364125 ACATTAAGGG
* *
43364135 AATGAGA--TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGA
1 AATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGA
* *
43364186 GATTATGAGAGG-CCCTATGTAAGACCATGTCTAGAACATGGCGTTGGCACCGA
1 -A--ATGAGAGGTCCC-ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
* * *
43364239 AATAAGAGGTCCCATGCAATACCATGTCTGGGACATGGCGTTGGCACCGA
1 AATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
* * * *
43364289 GATGAGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGTGTGGGCACCGA
1 AATGAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
* ** * * *
43364339 TATGAGAACT-CCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 AATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
43364384 GTACAGAAAA
Statistics
Matches: 164, Mismatches: 25, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
48 2 0.01
49 26 0.16
50 87 0.53
51 5 0.03
52 2 0.01
53 2 0.01
54 6 0.04
55 4 0.02
56 30 0.18
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
Found at i:43364648 original size:12 final size:12
Alignment explanation
Indices: 43364631--43364669 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
43364621 ATGAGTTATA
43364631 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
43364643 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
43364655 TAAGTGAGTAAG
1 TAAGTAAGCAAG
43364667 TAA
1 TAA
43364670 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:43367806 original size:9 final size:9
Alignment explanation
Indices: 43367792--43367819 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
43367782 GGCCCCATTG
43367792 GAATTGAAA
1 GAATTGAAA
43367801 GAATTGAAA
1 GAATTGAAA
43367810 GAATTGAAA
1 GAATTGAAA
43367819 G
1 G
43367820 CTCAGATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.25, T:0.21
Consensus pattern (9 bp):
GAATTGAAA
Found at i:43381377 original size:23 final size:24
Alignment explanation
Indices: 43381323--43381734 Score: 139
Period size: 23 Copynumber: 17.2 Consensus size: 24
43381313 TACATCAAAG
*
43381323 TGGACAACATTTATACACAAAAAT
1 TGGACAGCATTTATACACAAAAAT
* *
43381347 TGGACAGCATTTATACAC-TAATT
1 TGGACAGCATTTATACACAAAAAT
* * *
43381370 TGGGCAGCATATATATATC--AAAT
1 TGGACAGCATTTATACA-CAAAAAT
* * * *
43381393 TGAACAACATTTTTTTTACACCAAAAT
1 TGGACAGCA---TTTATACACAAAAAT
* ** *
43381420 TTGACAGCAAATATACAC-CAAAT
1 TGGACAGCATTTATACACAAAAAT
* * *
43381443 TGGGCAGCATATATATATATATATCAAAT
1 TGGACAGCAT-T-TATACACA-A--AAAT
* *
43381472 TGTACAGCATTTTTACATC-AAAAT
1 TGGACAGCATTTATACA-CAAAAAT
* * * *
43381496 TGGATAGCATATAGACAC-CAAAT
1 TGGACAGCATTTATACACAAAAAT
* *
43381519 TGGGCAGCACTTT-TACACCAAAAT
1 TGGACAGCA-TTTATACACAAAAAT
* * *
43381543 TGGACAGCATATAGACAC-CAAAT
1 TGGACAGCATTTATACACAAAAAT
* * * *
43381566 TGGATAGCATATAGACAC-CAAAT
1 TGGACAGCATTTATACACAAAAAT
* * *
43381589 TGGGCGGCATTTTTACACAAAAAAT
1 TGGACAGCATTTATACAC-AAAAAT
* * * *
43381614 TGGATAGCATATAGACAC-CAAAT
1 TGGACAGCATTTATACACAAAAAT
* * * *
43381637 TGGATAGCATATAGACAC-CAAAT
1 TGGACAGCATTTATACACAAAAAT
* * * *
43381660 TGGGCAGCATATAGACAC-CAAAT
1 TGGACAGCATTTATACACAAAAAT
* * * *
43381683 TGGGCAGCATATAGACAC-CAAAT
1 TGGACAGCATTTATACACAAAAAT
* * *
43381706 TGGGCAGCATTTTTACACCAAAAT
1 TGGACAGCATTTATACACAAAAAT
43381730 TGGAC
1 TGGAC
43381735 TTGAATTGAA
Statistics
Matches: 300, Mismatches: 69, Indels: 38
0.74 0.17 0.09
Matches are distributed among these distances:
23 179 0.60
24 66 0.22
25 22 0.07
26 6 0.02
27 14 0.05
28 1 0.00
29 12 0.04
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (24 bp):
TGGACAGCATTTATACACAAAAAT
Found at i:43381649 original size:71 final size:70
Alignment explanation
Indices: 43381492--43381708 Score: 339
Period size: 71 Copynumber: 3.1 Consensus size: 70
43381482 TTTTACATCA
43381492 AAATTGGATAGCATATAGACACCAAATTGGGCAGCACTTTTACAC-CAAAATTGGACAGCATATA
1 AAATTGGATAGCATATAGACACCAAATTGGGCAGCA-TTTTACACACAAAATTGGACAGCATATA
43381556 GACACC
65 GACACC
* * *
43381562 AAATTGGATAGCATATAGACACCAAATTGGGCGGCATTTTTACACAAAAAATTGGATAGCATATA
1 AAATTGGATAGCATATAGACACCAAATTGGGCAGCA-TTTTACACACAAAATTGGACAGCATATA
43381627 GACACC
65 GACACC
* * * *
43381633 AAATTGGATAGCATATAGACACCAAATTGGGCAGCA-TATAGACACCAAATTGGGCAGCATATAG
1 AAATTGGATAGCATATAGACACCAAATTGGGCAGCATTTTACACACAAAATTGGACAGCATATAG
43381697 ACACC
66 ACACC
43381702 AAATTGG
1 AAATTGG
43381709 GCAGCATTTT
Statistics
Matches: 135, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
69 34 0.25
70 43 0.32
71 58 0.43
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (70 bp):
AAATTGGATAGCATATAGACACCAAATTGGGCAGCATTTTACACACAAAATTGGACAGCATATAG
ACACC
Found at i:43381672 original size:117 final size:116
Alignment explanation
Indices: 43381467--43381733 Score: 385
Period size: 117 Copynumber: 2.3 Consensus size: 116
43381457 ATATATATAT
** * *
43381467 CAAATTGTACAGCATTTTTACATCAAAATTGGATAGCATATAGACACCAAATTGGGCAGCACTTT
1 CAAATTGGGCAGCATTTTTACA-CAAAATTGGATAGCATATAGACACCAAATTGGACAGCACTTA
* *
43381532 TACACCAAAATTGGACAGCATATAGACACCAAATTGGATAGCATATAGACAC
65 GACACCAAAATTGGACAGCATATAGACACCAAATTGGACAGCATATAGACAC
* *
43381584 CAAATTGGGCGGCATTTTTACACAAAAAATTGGATAGCATATAGACACCAAATTGGATAGCA-TA
1 CAAATTGGGCAGCATTTTTACAC--AAAATTGGATAGCATATAGACACCAAATTGGACAGCACT-
* *
43381648 TAGACACC-AAATTGGGCAGCATATAGACACCAAATTGGGCAGCATATAGACAC
63 TAGACACCAAAATTGGACAGCATATAGACACCAAATTGGACAGCATATAGACAC
43381701 CAAATTGGGCAGCATTTTTACACCAAAATTGGA
1 CAAATTGGGCAGCATTTTTACA-CAAAATTGGA
43381734 CTTGAATTGA
Statistics
Matches: 135, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
116 10 0.07
117 83 0.61
118 42 0.31
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.24
Consensus pattern (116 bp):
CAAATTGGGCAGCATTTTTACACAAAATTGGATAGCATATAGACACCAAATTGGACAGCACTTAG
ACACCAAAATTGGACAGCATATAGACACCAAATTGGACAGCATATAGACAC
Found at i:43381677 original size:46 final size:46
Alignment explanation
Indices: 43381492--43381734 Score: 272
Period size: 46 Copynumber: 5.2 Consensus size: 46
43381482 TTTTACATCA
* **
43381492 AAATTGGATAGCATATAGACACCAAATTGGGCAGCACT-TTTACACC
1 AAATTGGACAGCATATAGACACCAAATTGGGCAGCA-TATAGACACC
**
43381538 AAAATTGGACAGCATATAGACACCAAATTGGATAGCATATAGACACC
1 -AAATTGGACAGCATATAGACACCAAATTGGGCAGCATATAGACACC
* * * * ** **
43381585 AAATTGGGCGGCATTTTTACACAAAAAATTGGATAGCATATAGACACC
1 AAATTGGACAGCA--TATAGACACCAAATTGGGCAGCATATAGACACC
*
43381633 AAATTGGATAGCATATAGACACCAAATTGGGCAGCATATAGACACC
1 AAATTGGACAGCATATAGACACCAAATTGGGCAGCATATAGACACC
* * **
43381679 AAATTGGGCAGCATATAGACACCAAATTGGGCAGCATTTTTACACC
1 AAATTGGACAGCATATAGACACCAAATTGGGCAGCATATAGACACC
43381725 AAAATTGGAC
1 -AAATTGGAC
43381735 TTGAATTGAA
Statistics
Matches: 166, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
46 80 0.48
47 47 0.28
48 39 0.23
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (46 bp):
AAATTGGACAGCATATAGACACCAAATTGGGCAGCATATAGACACC
Found at i:43382628 original size:42 final size:42
Alignment explanation
Indices: 43382576--43382660 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
43382566 GCTCTCGGTA
*
43382576 TCGCACACTTAGTGCCCGTTATTCAACATCATCATTTTAATT
1 TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
* *
43382618 TCGCACACTTAGTGCCTATTATTCAACATCATTATTTTAATT
1 TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
43382660 T
1 T
43382661 TTAGTGCCGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
Found at i:43383551 original size:20 final size:20
Alignment explanation
Indices: 43383528--43383565 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
43383518 GTGTTTTATT
43383528 TTATTATCATTATACTAACA
1 TTATTATCATTATACTAACA
* *
43383548 TTATTATTATTTTACTAA
1 TTATTATCATTATACTAA
43383566 GTTAACCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATTATCATTATACTAACA
Found at i:43385826 original size:31 final size:31
Alignment explanation
Indices: 43385788--43385849 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
43385778 TCTATTGCAT
43385788 AGGTACCTTCTAGTACTTCTTCTAAACCTAC
1 AGGTACCTTCTAGTACTTCTTCTAAACCTAC
43385819 AGGTACCTTCTAGTACTTCTTCTAAACCTAC
1 AGGTACCTTCTAGTACTTCTTCTAAACCTAC
43385850 TTCGAATCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (31 bp):
AGGTACCTTCTAGTACTTCTTCTAAACCTAC
Found at i:43392085 original size:48 final size:48
Alignment explanation
Indices: 43391968--43392125 Score: 212
Period size: 48 Copynumber: 3.3 Consensus size: 48
43391958 TTGTAGATCG
* * *
43391968 TCACATATCACACACCGAAGCCATAGCCCAGCTATGGTCTTACAC-GAAA
1 TCACATAT--CACACCGATGCCATATCCCAACTATGGTCTTACACGGAAA
* *
43392017 ACACATATCACACCGATGCCATATCCCAAATATGGTCTTACACGGAAA
1 TCACATATCACACCGATGCCATATCCCAACTATGGTCTTACACGGAAA
*
43392065 TCACATATCACACCGATGCCATATCCCAACTATGGTCTTATACGG-AA
1 TCACATATCACACCGATGCCATATCCCAACTATGGTCTTACACGGAAA
*
43392112 GCACATAGTCACAC
1 TCACATA-TCACAC
43392126 TTTCACATGT
Statistics
Matches: 98, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
47 39 0.40
48 52 0.53
49 7 0.07
ACGTcount: A:0.35, C:0.31, G:0.13, T:0.21
Consensus pattern (48 bp):
TCACATATCACACCGATGCCATATCCCAACTATGGTCTTACACGGAAA
Found at i:43394307 original size:19 final size:20
Alignment explanation
Indices: 43394285--43394334 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
43394275 TTAAATAATA
*
43394285 TTAAGGTTTTT-AATAGGGT
1 TTAAGGTTTTTAAAAAGGGT
*
43394304 TTAAGTTTTTTCAAAAAGGGT
1 TTAAGGTTTTT-AAAAAGGGT
*
43394325 TCAAGGTTTT
1 TTAAGGTTTT
43394335 CGACTGAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 10 0.40
21 15 0.60
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
TTAAGGTTTTTAAAAAGGGT
Found at i:43397282 original size:27 final size:27
Alignment explanation
Indices: 43397252--43397382 Score: 111
Period size: 27 Copynumber: 4.9 Consensus size: 27
43397242 CTGTCCAGGT
* * * *
43397252 AGACTACCCCATTTTTATTGTCTTGGC
1 AGACTAACCCATGTTTATTGTCCTAGC
* * *
43397279 AGACTATCCCATGTTTACTGCCCTAGC
1 AGACTAACCCATGTTTATTGTCCTAGC
* *
43397306 AGACTAACCCACGTTTATTGTCCTAAC
1 AGACTAACCCATGTTTATTGTCCTAGC
* * ** *
43397333 GGACTATCCCATGTTTATCATCCTGGC
1 AGACTAACCCATGTTTATTGTCCTAGC
*
43397360 AAACTAACCCACT-TTTATTGTCC
1 AGACTAACCCA-TGTTTATTGTCC
43397383 CAGTGGATTA
Statistics
Matches: 80, Mismatches: 23, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
27 79 0.99
28 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.34
Consensus pattern (27 bp):
AGACTAACCCATGTTTATTGTCCTAGC
Found at i:43397366 original size:54 final size:53
Alignment explanation
Indices: 43397280--43397400 Score: 145
Period size: 54 Copynumber: 2.2 Consensus size: 53
43397270 TGTCTTGGCA
* *
43397280 GACTATCCCATGTTTACTGCCCTAGCAGACTAACCCACGTTTATTGTCCTAACG
1 GACTATCCCATGTTTACT-CCCTAGCAAACTAACCCACGTTTATTGTCCCAACG
* * **
43397334 GACTATCCCATGTTTA-TCATCCTGGCAAACTAACCCACTTTTATTGTCCCAGTG
1 GACTATCCCATGTTTACTC--CCTAGCAAACTAACCCACGTTTATTGTCCCAACG
*
43397388 GATTATCCCATGT
1 GACTATCCCATGT
43397401 CTGTCGTCTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
52 1 0.02
53 1 0.02
54 56 0.97
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (53 bp):
GACTATCCCATGTTTACTCCCTAGCAAACTAACCCACGTTTATTGTCCCAACG
Found at i:43434142 original size:20 final size:21
Alignment explanation
Indices: 43434090--43434145 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
43434080 TAAAAAAAAT
*
43434090 TAAAATA-AATAACTAAGATCAA
1 TAAAATAGAACAA-TAA-ATCAA
43434112 TAAAATAGAACAATAAATCAA
1 TAAAATAGAACAATAAATCAA
*
43434133 -AAATTAGAACAAT
1 TAAAATAGAACAAT
43434146 TGTAACATCC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.39
21 5 0.16
22 10 0.32
23 4 0.13
ACGTcount: A:0.64, C:0.09, G:0.05, T:0.21
Consensus pattern (21 bp):
TAAAATAGAACAATAAATCAA
Found at i:43435009 original size:50 final size:51
Alignment explanation
Indices: 43434878--43435175 Score: 268
Period size: 50 Copynumber: 5.8 Consensus size: 51
43434868 ATTTGGGTAA
* *
43434878 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC--TGA-G--ATG
* *
43434934 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCATC-GAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTGAGATG
* * *
43434984 AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCA-CTTAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTGAGATG
** * * *
43435034 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCA-CCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTGAGATG
** * * * * *
43435084 AGAACTCCCATGTAAGACTATATTTGGGATATGGCATTGGTAGTAC--A-AT-
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-T-CTGAGATG
* ** * *
43435133 AAATATCCCATGTAAGACCATGCCTGGGACATGGCTTTGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
43435176 GTTATTATCA
Statistics
Matches: 203, Mismatches: 35, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
48 1 0.00
49 33 0.16
50 123 0.61
51 1 0.00
52 1 0.00
53 3 0.01
56 41 0.20
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (51 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTGAGATG
Found at i:43435085 original size:100 final size:105
Alignment explanation
Indices: 43434878--43435123 Score: 315
Period size: 100 Copynumber: 2.4 Consensus size: 105
43434868 ATTTGGGTAA
43434878 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATAAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGG-TATAAGAGGTCCC
* * *
43434943 ACGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
65 ACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* * * * *
43434984 AGAGGTCCCATGTAAGAGCATGTCTGGGACATGGCGTTGGCA-C-TT-A-G-ATGAGAGGTCCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTATAAGAGGTCCCA
*
43435044 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
66 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* * * *
43435084 AGA-ACTCCCATGTAAGACTATATTTGGGATATGGCATTGG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
43435124 TAGTACAATA
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
100 79 0.64
102 1 0.01
103 1 0.01
104 2 0.02
105 1 0.01
106 39 0.32
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (105 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTATAAGAGGTCCCA
CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
Found at i:43441171 original size:20 final size:22
Alignment explanation
Indices: 43441146--43441187 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
43441136 AAGTTTCTCG
43441146 ATTCAATT-TATA-AACCAATT
1 ATTCAATTATATATAACCAATT
43441166 ATTCAATTATATATAACCAATT
1 ATTCAATTATATATAACCAATT
43441188 CATCAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 8 0.40
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTCAATTATATATAACCAATT
Found at i:43443419 original size:15 final size:15
Alignment explanation
Indices: 43443399--43443436 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
43443389 TTAATCAGAA
*
43443399 TGAGGTATTTAAAAT
1 TGAGGTACTTAAAAT
43443414 TGAGGTACTTAAAAT
1 TGAGGTACTTAAAAT
43443429 TGAGGTAC
1 TGAGGTAC
43443437 CAAATTATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (15 bp):
TGAGGTACTTAAAAT
Found at i:43444097 original size:15 final size:15
Alignment explanation
Indices: 43444074--43444103 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
43444064 TACATGTTTT
*
43444074 TATATATTATAGATA
1 TATACATTATAGATA
43444089 TATACATTATAGATA
1 TATACATTATAGATA
43444104 CGATAATAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (15 bp):
TATACATTATAGATA
Found at i:43446183 original size:25 final size:25
Alignment explanation
Indices: 43446154--43446205 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
43446144 TTCATTTATA
*
43446154 TTTCACCAGTCCCGTGTATTTAAGT
1 TTTCACCAGTCCCGTCTATTTAAGT
* *
43446179 TTTCACCAGTCCTGTCTGTTTAAGT
1 TTTCACCAGTCCCGTCTATTTAAGT
43446204 TT
1 TT
43446206 ACTGATTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.17, C:0.23, G:0.15, T:0.44
Consensus pattern (25 bp):
TTTCACCAGTCCCGTCTATTTAAGT
Found at i:43447736 original size:16 final size:16
Alignment explanation
Indices: 43447715--43447767 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
43447705 AGAATTATCT
*
43447715 ATTACGCATCTATTTC
1 ATTACGCATCTATTCC
43447731 ATTACGCATCTATTCC
1 ATTACGCATCTATTCC
* *
43447747 ATTACACCTCTATTCC
1 ATTACGCATCTATTCC
43447763 ATTAC
1 ATTAC
43447768 AGCGAACCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.40
Consensus pattern (16 bp):
ATTACGCATCTATTCC
Found at i:43455673 original size:17 final size:17
Alignment explanation
Indices: 43455653--43455715 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 17
43455643 ATTATTTTAA
43455653 TAAATTTAATATTAAAT
1 TAAATTTAATATTAAAT
*
43455670 TAAATTTAATATT-TAT
1 TAAATTTAATATTAAAT
**
43455686 ATAAA--TAATATTTTAT
1 -TAAATTTAATATTAAAT
43455702 T-AATTTAATATTAA
1 TAAATTTAATATTAA
43455716 TGAAATTAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 2 0.05
15 8 0.21
16 12 0.31
17 17 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAAATTTAATATTAAAT
Found at i:43459439 original size:15 final size:15
Alignment explanation
Indices: 43459421--43459450 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
43459411 AAGTTATAAA
43459421 AATTAAAAATGAAAT
1 AATTAAAAATGAAAT
*
43459436 AATTAAACATGAAAT
1 AATTAAAAATGAAAT
43459451 GGCTTAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (15 bp):
AATTAAAAATGAAAT
Found at i:43461273 original size:24 final size:24
Alignment explanation
Indices: 43461223--43461273 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
43461213 CTTGAATAAA
*
43461223 AGAGAAAATGAGAAGGAAAAGTTG
1 AGAGAAAATGAGAAGGAAAAGTAG
* *
43461247 AGAGAAAGTGAGAGAGGAGAAG-AG
1 AGAGAAAATGAGA-AGGAAAAGTAG
43461271 AGA
1 AGA
43461274 ATGAGAGTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.53, C:0.00, G:0.39, T:0.08
Consensus pattern (24 bp):
AGAGAAAATGAGAAGGAAAAGTAG
Found at i:43473073 original size:26 final size:26
Alignment explanation
Indices: 43473004--43473075 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
43472994 CATTTCGACC
* *
43473004 CACAGCTTGTGTGAGCAGACCCATTT
1 CACAGCTTGTGTGAGCATATCCATTT
** *
43473030 CACAGCTCATGTGAGCATATTCATTT
1 CACAGCTTGTGTGAGCATATCCATTT
43473056 CACAGCTTGTGTGAGCATAT
1 CACAGCTTGTGTGAGCATAT
43473076 ATTTACAAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (26 bp):
CACAGCTTGTGTGAGCATATCCATTT
Found at i:43476869 original size:15 final size:16
Alignment explanation
Indices: 43476840--43476869 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43476830 CAAACATACT
43476840 TTAACACATTATCAAA
1 TTAACACATTATCAAA
43476856 TTAACACA-TATCAA
1 TTAACACATTATCAA
43476870 CAAGGTACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:43509646 original size:14 final size:14
Alignment explanation
Indices: 43509623--43509652 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
43509613 CTGATCATAT
*
43509623 TCACATCTCTTCTC
1 TCACAACTCTTCTC
43509637 TCACAACTCTTCTC
1 TCACAACTCTTCTC
43509651 TC
1 TC
43509653 TTCTGTCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:43513362 original size:59 final size:59
Alignment explanation
Indices: 43513270--43513385 Score: 232
Period size: 59 Copynumber: 2.0 Consensus size: 59
43513260 TTTTGGATAG
43513270 GTATGGATTTCAAGAACAGGATGCATCAAAATAGTTTCAAGCATGAAAATAGTTCGGAT
1 GTATGGATTTCAAGAACAGGATGCATCAAAATAGTTTCAAGCATGAAAATAGTTCGGAT
43513329 GTATGGATTTCAAGAACAGGATGCATCAAAATAGTTTCAAGCATGAAAATAGTTCGG
1 GTATGGATTTCAAGAACAGGATGCATCAAAATAGTTTCAAGCATGAAAATAGTTCGG
43513386 TACATCGTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (59 bp):
GTATGGATTTCAAGAACAGGATGCATCAAAATAGTTTCAAGCATGAAAATAGTTCGGAT
Found at i:43517413 original size:24 final size:24
Alignment explanation
Indices: 43517359--43517413 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
43517349 TTAATTCAAC
*
43517359 TTTATATTCAGTTTAGTTTTCATT
1 TTTATTTTCAGTTTAGTTTTCATT
*** * *
43517383 AGGATTTTTAGTTTAGTTTTCTTT
1 TTTATTTTCAGTTTAGTTTTCATT
43517407 TTTATTT
1 TTTATTT
43517414 CGTTCTTACC
Statistics
Matches: 22, Mismatches: 9, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.18, C:0.05, G:0.11, T:0.65
Consensus pattern (24 bp):
TTTATTTTCAGTTTAGTTTTCATT
Found at i:43528544 original size:144 final size:144
Alignment explanation
Indices: 43528282--43528609 Score: 620
Period size: 144 Copynumber: 2.3 Consensus size: 144
43528272 CTAAACCGAG
43528282 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
1 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
* *
43528347 ATGAGTCATCGAACAAATCTGAAATGGAAGCTAACTCAGTTACTGAGATAGAAGAGGTAGAATCT
66 ATGAGTCATCGAACAAATCTAAAATGGAAGCTAACTCAGTTACTGAGACAGAAGAGGTAGAATCT
43528412 GAGGAAGAATCGAA
131 GAGGAAGAATCGAA
*
43528426 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTTTGAACTGATAA
1 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
43528491 ATGAGTCATCGAACAAATCTAAAATGGAAGCTAACTCAGTTACTGAGACAGAAGAGGTAGAATCT
66 ATGAGTCATCGAACAAATCTAAAATGGAAGCTAACTCAGTTACTGAGACAGAAGAGGTAGAATCT
43528556 GAGGAAGAATCGAA
131 GAGGAAGAATCGAA
*
43528570 TGATCCTGAACTGATAAAGGAACCAAAAGTCTTTGAACCA
1 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCA
43528610 AGAGAGGATC
Statistics
Matches: 180, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
144 180 1.00
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.21
Consensus pattern (144 bp):
TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
ATGAGTCATCGAACAAATCTAAAATGGAAGCTAACTCAGTTACTGAGACAGAAGAGGTAGAATCT
GAGGAAGAATCGAA
Found at i:43529604 original size:8 final size:8
Alignment explanation
Indices: 43529593--43529617 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
43529583 AAAGGGAAAA
43529593 GATCATGG
1 GATCATGG
43529601 GATCATGG
1 GATCATGG
43529609 GATCATGG
1 GATCATGG
43529617 G
1 G
43529618 TCTACTCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.40, T:0.24
Consensus pattern (8 bp):
GATCATGG
Found at i:43532283 original size:25 final size:25
Alignment explanation
Indices: 43532251--43532316 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
43532241 TTCCTGATTC
43532251 TCAGCTCG-AGAGAGCTTACCGATAT
1 TCAGCTCGCA-AGAGCTTACCGATAT
*
43532276 TCAGCTCGCATGAGCTTACCGATAT
1 TCAGCTCGCAAGAGCTTACCGATAT
* *
43532301 TCAGCTCACATGAGCT
1 TCAGCTCGCAAGAGCT
43532317 ACTGTTTACA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (25 bp):
TCAGCTCGCAAGAGCTTACCGATAT
Found at i:43538422 original size:76 final size:77
Alignment explanation
Indices: 43538322--43538475 Score: 301
Period size: 76 Copynumber: 2.0 Consensus size: 77
43538312 GTTTTGCACA
43538322 AAAAGTGAAAATTTGCTCAACAAACACCTAGAAAGGCTTGAATCGTTGGTGGAATTTTTTACATC
1 AAAAGTGAAAATTTGCTCAACAAACACCTAGAAAGGCTTGAATCGTTGGTGGAATTTTTTACATC
43538387 AACTGAACCAAG
66 AACTGAACCAAG
43538399 AAAAGTGAAAA-TTGCTCAACAAACACCTAGAAAGGCTTGAATCGTTGGTGGAATTTTTTACATC
1 AAAAGTGAAAATTTGCTCAACAAACACCTAGAAAGGCTTGAATCGTTGGTGGAATTTTTTACATC
43538463 AACTGAACCAAG
66 AACTGAACCAAG
43538475 A
1 A
43538476 GAAGGCTTAA
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
76 66 0.86
77 11 0.14
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (77 bp):
AAAAGTGAAAATTTGCTCAACAAACACCTAGAAAGGCTTGAATCGTTGGTGGAATTTTTTACATC
AACTGAACCAAG
Found at i:43545558 original size:16 final size:15
Alignment explanation
Indices: 43545526--43545564 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
43545516 TGATAATAAC
43545526 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
43545542 TTATTATAATGTATAT
1 TAATTATAAT-TATAT
43545558 TAATTAT
1 TAATTAT
43545565 TATCGACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:43546346 original size:16 final size:18
Alignment explanation
Indices: 43546311--43546347 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
43546301 AGTGATCCAT
*
43546311 ATGCAATTTCTAATCTAA
1 ATGCAATTTCTAACCTAA
43546329 ATGCAATTT-T-ACCTAA
1 ATGCAATTTCTAACCTAA
43546345 ATG
1 ATG
43546348 TATGAATGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 1 0.06
18 9 0.50
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (18 bp):
ATGCAATTTCTAACCTAA
Found at i:43547031 original size:36 final size:36
Alignment explanation
Indices: 43546984--43547054 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
43546974 TAAACTCTAT
* *
43546984 TCAGTTCAGCAGCCTTTCAGATTTATTCTGACTGAC
1 TCAGTTAAGCAGCCTTTCAGATCTATTCTGACTGAC
* *
43547020 TCAGTTAAGCAGCGTTTCATATCTATTCTGACTGA
1 TCAGTTAAGCAGCCTTTCAGATCTATTCTGACTGA
43547055 AGCGCTCCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.37
Consensus pattern (36 bp):
TCAGTTAAGCAGCCTTTCAGATCTATTCTGACTGAC
Found at i:43548960 original size:25 final size:26
Alignment explanation
Indices: 43548907--43548960 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
43548897 TTCTCCTAAA
*
43548907 TTTCAATTTTATTTAATTATTTAATT
1 TTTCAATTTTATTGAATTATTTAATT
*
43548933 TTTCAA-TTTATTGGATT-TTTAATAT
1 TTTCAATTTTATTGAATTATTTAAT-T
43548958 TTT
1 TTT
43548961 ATACTAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 13 0.52
26 6 0.24
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (26 bp):
TTTCAATTTTATTGAATTATTTAATT
Found at i:43551312 original size:27 final size:27
Alignment explanation
Indices: 43551277--43551455 Score: 234
Period size: 27 Copynumber: 6.6 Consensus size: 27
43551267 AAAATAACAA
* *
43551277 CATAAGGTAAAATGACTGAAATACCCT
1 CATAGGGTAAAATGACCGAAATACCCT
* *
43551304 TATAGGGTAAAATGACCAAAAATACCCT
1 CATAGGGTAAAATGACC-GAAATACCCT
* * *
43551332 TATAGGGTAGAATGACCAAAATACCCT
1 CATAGGGTAAAATGACCGAAATACCCT
43551359 CATAGGGTAAAATGACCGAAATACCCT
1 CATAGGGTAAAATGACCGAAATACCCT
* * *
43551386 CATAGGGTAGAATGATCGAAATACCCC
1 CATAGGGTAAAATGACCGAAATACCCT
*
43551413 CATACGGTAAAATGACCGAAATACCC-
1 CATAGGGTAAAATGACCGAAATACCCT
43551439 CTATAGGGTAAAATGAC
1 C-ATAGGGTAAAATGAC
43551456 TATTATACCC
Statistics
Matches: 135, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 109 0.81
28 25 0.19
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (27 bp):
CATAGGGTAAAATGACCGAAATACCCT
Found at i:43551451 original size:81 final size:82
Alignment explanation
Indices: 43551261--43551455 Score: 241
Period size: 82 Copynumber: 2.4 Consensus size: 82
43551251 TTACACTGTT
* ** * * *
43551261 ATGACCAAAATAACAACATAAGGTAAAATGACTGAAATACCCTTATAGGGTAAAATGACCAAAAA
1 ATGACCAAAATACCCTCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCAAAAA
** * *
43551326 TACCCTTATAGGGTAGA
66 TACCCCCATACGGTAAA
* * *
43551343 ATGACCAAAATACCCTCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAGAATGATC-GAAA
1 ATGACCAAAATACCCTCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCAAAAA
43551407 TACCCCCATACGGTAAA
66 TACCCCCATACGGTAAA
*
43551424 ATGACCGAAATACCC-CTATAGGGTAAAATGAC
1 ATGACCAAAATACCCTC-ATAGGGTAAAATGAC
43551456 TATTATACCC
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 45 0.46
82 52 0.53
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (82 bp):
ATGACCAAAATACCCTCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCAAAAA
TACCCCCATACGGTAAA
Found at i:43568725 original size:17 final size:17
Alignment explanation
Indices: 43568703--43568741 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
43568693 GAGACAATTG
43568703 AAATAAAAGAAAACGAA-
1 AAATAAAA-AAAACGAAT
*
43568720 AAATAAAAAAAAGGAAT
1 AAATAAAAAAAACGAAT
43568737 AAATA
1 AAATA
43568742 TTTTTAGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.77, C:0.03, G:0.10, T:0.10
Consensus pattern (17 bp):
AAATAAAAAAAACGAAT
Found at i:43570022 original size:49 final size:49
Alignment explanation
Indices: 43569969--43570098 Score: 154
Period size: 49 Copynumber: 2.7 Consensus size: 49
43569959 TTATGATAGA
* * * *
43569969 CCACTCGTAGGGTACATTAGTTGCTAACCAGAT-GGGAAAATAAGATGGG
1 CCACTAGTAGGGCATATTAGTTGCTAACCAGATAGGCAAAA-AAGATGGG
* * * *
43570018 CCACTAGTAGGGCGTGTTAGCTGCTAACCAGGTAGGCAAAAAAGATGGG
1 CCACTAGTAGGGCATATTAGTTGCTAACCAGATAGGCAAAAAAGATGGG
* *
43570067 CCACTGGTAGGGCATTTTAGTTGCTAACCAGA
1 CCACTAGTAGGGCATATTAGTTGCTAACCAGA
43570099 GTGGCGTAAG
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
49 61 0.91
50 6 0.09
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.22
Consensus pattern (49 bp):
CCACTAGTAGGGCATATTAGTTGCTAACCAGATAGGCAAAAAAGATGGG
Found at i:43573415 original size:24 final size:24
Alignment explanation
Indices: 43573388--43573443 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
43573378 TATTTAAATT
43573388 ATTCGAGTCAACTCGAATAATTCG
1 ATTCGAGTCAACTCGAATAATTCG
*
43573412 ATTCGAGTCAACTCGAATAATTTG
1 ATTCGAGTCAACTCGAATAATTCG
43573436 ATTCGAGT
1 ATTCGAGT
43573444 TTTGATTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (24 bp):
ATTCGAGTCAACTCGAATAATTCG
Found at i:43573625 original size:19 final size:19
Alignment explanation
Indices: 43573580--43573651 Score: 92
Period size: 20 Copynumber: 3.7 Consensus size: 19
43573570 AAAAATTACA
43573580 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
43573599 CAAAAATTCAAAATAATTTT
1 -AAAAATTCAAAATAATTTT
* *
43573619 TAAAATTC-AAATTATTTAT
1 AAAAATTCAAAATAATTT-T
43573638 AAAAATTTCAAAAT
1 AAAAA-TTCAAAAT
43573652 TTATATATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
18 8 0.17
19 12 0.26
20 22 0.48
21 4 0.09
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:43573688 original size:20 final size:19
Alignment explanation
Indices: 43573664--43573718 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
43573654 ATATATTTTT
*
43573664 TAAAAAAAATTAAAAAATT
1 TAAAAAAAATTAAAAAATA
* *
43573683 TCAAAAAATTCTAAAAAATA
1 TAAAAAAAAT-TAAAAAATA
43573703 TAAAAAAAAGTTAAAA
1 TAAAAAAAA-TTAAAA
43573719 TTTTAAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 8 0.28
20 20 0.69
21 1 0.03
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (19 bp):
TAAAAAAAATTAAAAAATA
Found at i:43573734 original size:39 final size:39
Alignment explanation
Indices: 43573664--43573743 Score: 101
Period size: 39 Copynumber: 2.0 Consensus size: 39
43573654 ATATATTTTT
43573664 TAAAAAAAATTAAAAAATTTCAAAAAATTCTAAAA-AATA
1 TAAAAAAAATT-AAAAATTTCAAAAAATTCTAAAATAATA
* *
43573703 TAAAAAAAAGTT-AAAATTTTAAAAATGTTCTAAAATAATA
1 TAAAAAAAA-TTAAAAATTTCAAAAA-ATTCTAAAATAATA
43573743 T
1 T
43573744 TTTTGGGACC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
38 12 0.33
39 17 0.47
40 7 0.19
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.30
Consensus pattern (39 bp):
TAAAAAAAATTAAAAATTTCAAAAAATTCTAAAATAATA
Found at i:43573933 original size:5 final size:5
Alignment explanation
Indices: 43573921--43573981 Score: 77
Period size: 5 Copynumber: 12.2 Consensus size: 5
43573911 AAACAATTTC
* * * *
43573921 ACTCG ATTCG ATTCG ATTCG ATTCG ACTCG ACTCG ACTCG ACTCG ACTCG
1 ACTCG ACTCG ACTCG ACTCG ACTCG ACTCG ACTCG ACTCG ACTCG ACTCG
*
43573971 ACTTG ACTCG A
1 ACTCG ACTCG A
43573982 ACTTCATTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (5 bp):
ACTCG
Found at i:43573943 original size:15 final size:15
Alignment explanation
Indices: 43573921--43574007 Score: 81
Period size: 15 Copynumber: 5.7 Consensus size: 15
43573911 AAACAATTTC
*
43573921 ACTCGATTCGATTCG
1 ACTCGATTCGACTCG
*
43573936 ATTCGATTCGACTCG
1 ACTCGATTCGACTCG
*
43573951 ACTCGACTCGACTCG
1 ACTCGATTCGACTCG
43573966 ACTCGACTT-GACTCG
1 ACTCGA-TTCGACTCG
43573981 AACTTC-ATTTC-ACTCG
1 -AC-TCGA-TTCGACTCG
*
43573997 ACTTGATTCGA
1 ACTCGATTCGA
43574008 AAAAAATTCA
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
14 4 0.07
15 42 0.71
16 11 0.19
17 2 0.03
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (15 bp):
ACTCGATTCGACTCG
Found at i:43574549 original size:30 final size:30
Alignment explanation
Indices: 43574510--43574595 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 30
43574500 ATTTTGATTT
* *
43574510 TGAAGAGTTCAGTGACCAAAATAGAAATAA
1 TGAAAAGTTCAGTGACCAAAATAGAAACAA
*
43574540 TGAAAAGTTCAGTGACCAAAATAGACACAA
1 TGAAAAGTTCAGTGACCAAAATAGAAACAA
*
43574570 TGAAAAGTTCAGTGATCAAAATAGAA
1 TGAAAAGTTCAGTGACCAAAATAGAA
43574596 TATGGTAATA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.20
Consensus pattern (30 bp):
TGAAAAGTTCAGTGACCAAAATAGAAACAA
Found at i:43575537 original size:13 final size:13
Alignment explanation
Indices: 43575519--43575543 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43575509 AATAACTTTT
43575519 TTAGCTAAGTTTG
1 TTAGCTAAGTTTG
43575532 TTAGCTAAGTTT
1 TTAGCTAAGTTT
43575544 TCCTAAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
TTAGCTAAGTTTG
Found at i:43590960 original size:15 final size:15
Alignment explanation
Indices: 43590916--43590983 Score: 82
Period size: 15 Copynumber: 4.5 Consensus size: 15
43590906 ATTTCAATAT
* *
43590916 AGTTTCATAATCTAT
1 AGTTTCACAATCTAA
*
43590931 AGATTTCATAATCTAA
1 AG-TTTCACAATCTAA
* *
43590947 AGTTTCACAGTCTAT
1 AGTTTCACAATCTAA
43590962 AGTTTCACAATCTAA
1 AGTTTCACAATCTAA
43590977 AGTTTCA
1 AGTTTCA
43590984 GTATATAAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
15 32 0.70
16 14 0.30
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (15 bp):
AGTTTCACAATCTAA
Found at i:43590974 original size:30 final size:31
Alignment explanation
Indices: 43590916--43590983 Score: 102
Period size: 30 Copynumber: 2.2 Consensus size: 31
43590906 ATTTCAATAT
* *
43590916 AGTTTCATAATCTATAGATTTCATAATCTAA
1 AGTTTCACAATCTATAGATTTCACAATCTAA
*
43590947 AGTTTCACAGTCTATAG-TTTCACAATCTAA
1 AGTTTCACAATCTATAGATTTCACAATCTAA
43590977 AGTTTCA
1 AGTTTCA
43590984 GTATATAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 19 0.56
31 15 0.44
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (31 bp):
AGTTTCACAATCTATAGATTTCACAATCTAA
Found at i:43595397 original size:26 final size:26
Alignment explanation
Indices: 43595367--43595430 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
43595357 TACCCTATAG
*
43595367 CTCGTGTGAGCAGGCCCATTTCACAA
1 CTCGTGTGAGCAGACCCATTTCACAA
* * * *
43595393 TTCGTGTGAGCATACTCATTTCACGA
1 CTCGTGTGAGCAGACCCATTTCACAA
43595419 CTCGTGTGAGCA
1 CTCGTGTGAGCA
43595431 ACCATGTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (26 bp):
CTCGTGTGAGCAGACCCATTTCACAA
Found at i:43601431 original size:38 final size:36
Alignment explanation
Indices: 43601388--43601458 Score: 106
Period size: 38 Copynumber: 1.9 Consensus size: 36
43601378 ATTTAAAAAA
43601388 ATCTTATTTTCTTCAAACTACAAAAATAAAAAAATGTT
1 ATCTTATTTTCTTCAAA--ACAAAAATAAAAAAATGTT
* *
43601426 ATCTTATTTTCTTTAAAATAAAAATAAAAAAAT
1 ATCTTATTTTCTTCAAAACAAAAATAAAAAAAT
43601459 TAAATTCGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 15 0.48
38 16 0.52
ACGTcount: A:0.51, C:0.10, G:0.01, T:0.38
Consensus pattern (36 bp):
ATCTTATTTTCTTCAAAACAAAAATAAAAAAATGTT
Found at i:43612913 original size:25 final size:25
Alignment explanation
Indices: 43612865--43612914 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
43612855 CTTCACTGGG
*
43612865 ATCTACTTGGTATCTACTCATCATA
1 ATCTACTTGGTACCTACTCATCATA
* *
43612890 ATCTACTTGGTACCTGCTCGTCATA
1 ATCTACTTGGTACCTACTCATCATA
43612915 CTTAAGGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (25 bp):
ATCTACTTGGTACCTACTCATCATA
Found at i:43616939 original size:12 final size:13
Alignment explanation
Indices: 43616922--43616950 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
43616912 CTCATACACG
43616922 AATAAATAAA-GC
1 AATAAATAAATGC
43616934 AATAAATAAATGC
1 AATAAATAAATGC
43616947 AATA
1 AATA
43616951 GTTATAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:43619151 original size:14 final size:14
Alignment explanation
Indices: 43619132--43619160 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
43619122 CAAATAAAAA
43619132 CTTCAAAACATATG
1 CTTCAAAACATATG
43619146 CTTCAAAACATATG
1 CTTCAAAACATATG
43619160 C
1 C
43619161 ATACCAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (14 bp):
CTTCAAAACATATG
Found at i:43624806 original size:3 final size:3
Alignment explanation
Indices: 43624798--43624835 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
43624788 CCCTAATATC
43624798 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
43624836 GCCACCTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:43625119 original size:21 final size:21
Alignment explanation
Indices: 43625076--43625121 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
43625066 AAATTGTTAT
*
43625076 TTTTTTACTGTTTTCTTGATA
1 TTTTTTACTGTTTTCTCGATA
* *
43625097 TTTTTTACTGTTTTGTCGCTA
1 TTTTTTACTGTTTTCTCGATA
43625118 TTTT
1 TTTT
43625122 CTTGTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (21 bp):
TTTTTTACTGTTTTCTCGATA
Found at i:43625871 original size:15 final size:15
Alignment explanation
Indices: 43625851--43625888 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
43625841 ATAATTCATG
43625851 TTTTTTATTTTATAA
1 TTTTTTATTTTATAA
* *
43625866 TTTTTTATTTTTTTA
1 TTTTTTATTTTATAA
43625881 TTTTTTAT
1 TTTTTTAT
43625889 CATAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTATTTTATAA
Found at i:43633571 original size:38 final size:37
Alignment explanation
Indices: 43633527--43633678 Score: 169
Period size: 38 Copynumber: 4.0 Consensus size: 37
43633517 CGACATCGTG
* * *
43633527 GAATGGTTATCTACTAGTTCTACAGAGCGACACCGTGA
1 GAATGGTTATCTACTGGCTCTAC-GAGCGACACCATGA
* *
43633565 GAATGGTTATCTATTGGCTCTACGAAGCGACATCATGA
1 GAATGGTTATCTACTGGCTCTACG-AGCGACACCATGA
* * *
43633603 GAATGGTTAACTACTGGCTCTATGGAGTGACACCATGA
1 GAATGGTTATCTACTGGCTCTA-CGAGCGACACCATGA
** *
43633641 GAATTATTATCTATTGGCTCTACGAAGCGACACCATGA
1 GAATGGTTATCTACTGGCTCTACG-AGCGACACCATGA
43633679 AAATAGTCTA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
37 2 0.02
38 92 0.97
39 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (37 bp):
GAATGGTTATCTACTGGCTCTACGAGCGACACCATGA
Found at i:43633642 original size:76 final size:75
Alignment explanation
Indices: 43633515--43633709 Score: 234
Period size: 76 Copynumber: 2.6 Consensus size: 75
43633505 GAGGGAGTTT
* * ** * * *
43633515 AGCGACATCGTG-GAATGGTTATCTACTAGTTCTACAGAGCGACACCGTGAGAATGGTTATCTAT
1 AGCGACATCATGAGAATGGTTA-CTACTGGTTCTATGGAGTGACACCATGAGAATGATTATCTAT
43633579 TGGCTCTACGA
65 TGGCTCTACGA
* *
43633590 AGCGACATCATGAGAATGGTTAACTACTGGCTCTATGGAGTGACACCATGAGAATTATTATCTAT
1 AGCGACATCATGAGAATGGTT-ACTACTGGTTCTATGGAGTGACACCATGAGAATGATTATCTAT
43633655 TGGCTCTACGA
65 TGGCTCTACGA
* * * *
43633666 AGCGACACCATGAAAATAG-T-CTACAGGTTCTATGGAGTGACACC
1 AGCGACATCATGAGAATGGTTACTACTGGTTCTATGGAGTGACACC
43633710 TCGAAAGAGG
Statistics
Matches: 104, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
73 22 0.21
75 12 0.12
76 69 0.66
77 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (75 bp):
AGCGACATCATGAGAATGGTTACTACTGGTTCTATGGAGTGACACCATGAGAATGATTATCTATT
GGCTCTACGA
Found at i:43634469 original size:346 final size:346
Alignment explanation
Indices: 43633836--43634527 Score: 1384
Period size: 346 Copynumber: 2.0 Consensus size: 346
43633826 CCAAAACAAG
43633836 GTCTTGAGTGTGATATCTAAAGTAATAAACACTTAATCAAAATTGTACATTTTTTATTCGTCTAG
1 GTCTTGAGTGTGATATCTAAAGTAATAAACACTTAATCAAAATTGTACATTTTTTATTCGTCTAG
43633901 GATGAGCGTTTCGACCGAGTAGTCTTCTCTGCTATCCTCAAGCTCACGTCTGTAGAGTGTGGGCT
66 GATGAGCGTTTCGACCGAGTAGTCTTCTCTGCTATCCTCAAGCTCACGTCTGTAGAGTGTGGGCT
43633966 CGATTCGAATTAGAAATTTTTTTACAAAATTACCAGTGGGGTAATTTCACAATTTCTCTAAACTT
131 CGATTCGAATTAGAAATTTTTTTACAAAATTACCAGTGGGGTAATTTCACAATTTCTCTAAACTT
43634031 TTGGGTTAAGTTGTAAATCAGAAAAATATCTTTAAAAATTTTCTAAAATAATCTCTTTAGAGAAT
196 TTGGGTTAAGTTGTAAATCAGAAAAATATCTTTAAAAATTTTCTAAAATAATCTCTTTAGAGAAT
43634096 TTTCTCTATACAACTTTCTCTTACAAGTGTGTGTAAAATAATGGCCCAATGCTCTCTTTATATAG
261 TTTCTCTATACAACTTTCTCTTACAAGTGTGTGTAAAATAATGGCCCAATGCTCTCTTTATATAG
43634161 GGAGAGTTTAGAGAGTTCAAC
326 GGAGAGTTTAGAGAGTTCAAC
43634182 GTCTTGAGTGTGATATCTAAAGTAATAAACACTTAATCAAAATTGTACATTTTTTATTCGTCTAG
1 GTCTTGAGTGTGATATCTAAAGTAATAAACACTTAATCAAAATTGTACATTTTTTATTCGTCTAG
43634247 GATGAGCGTTTCGACCGAGTAGTCTTCTCTGCTATCCTCAAGCTCACGTCTGTAGAGTGTGGGCT
66 GATGAGCGTTTCGACCGAGTAGTCTTCTCTGCTATCCTCAAGCTCACGTCTGTAGAGTGTGGGCT
43634312 CGATTCGAATTAGAAATTTTTTTACAAAATTACCAGTGGGGTAATTTCACAATTTCTCTAAACTT
131 CGATTCGAATTAGAAATTTTTTTACAAAATTACCAGTGGGGTAATTTCACAATTTCTCTAAACTT
43634377 TTGGGTTAAGTTGTAAATCAGAAAAATATCTTTAAAAATTTTCTAAAATAATCTCTTTAGAGAAT
196 TTGGGTTAAGTTGTAAATCAGAAAAATATCTTTAAAAATTTTCTAAAATAATCTCTTTAGAGAAT
43634442 TTTCTCTATACAACTTTCTCTTACAAGTGTGTGTAAAATAATGGCCCAATGCTCTCTTTATATAG
261 TTTCTCTATACAACTTTCTCTTACAAGTGTGTGTAAAATAATGGCCCAATGCTCTCTTTATATAG
43634507 GGAGAGTTTAGAGAGTTCAAC
326 GGAGAGTTTAGAGAGTTCAAC
43634528 TATGATTAAA
Statistics
Matches: 346, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
346 346 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.37
Consensus pattern (346 bp):
GTCTTGAGTGTGATATCTAAAGTAATAAACACTTAATCAAAATTGTACATTTTTTATTCGTCTAG
GATGAGCGTTTCGACCGAGTAGTCTTCTCTGCTATCCTCAAGCTCACGTCTGTAGAGTGTGGGCT
CGATTCGAATTAGAAATTTTTTTACAAAATTACCAGTGGGGTAATTTCACAATTTCTCTAAACTT
TTGGGTTAAGTTGTAAATCAGAAAAATATCTTTAAAAATTTTCTAAAATAATCTCTTTAGAGAAT
TTTCTCTATACAACTTTCTCTTACAAGTGTGTGTAAAATAATGGCCCAATGCTCTCTTTATATAG
GGAGAGTTTAGAGAGTTCAAC
Found at i:43634605 original size:21 final size:20
Alignment explanation
Indices: 43634554--43634606 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
43634544 CACTTTAATT
43634554 TTAAATTAATATAATATTTA
1 TTAAATTAATATAATATTTA
43634574 TTAAATTTAATATTAA-ATCTTA
1 TTAAA-TTAATA-TAATAT-TTA
*
43634596 TTAAAATAATA
1 TTAAATTAATA
43634607 GAATGCTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 5 0.17
21 13 0.45
22 11 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TTAAATTAATATAATATTTA
Found at i:43640958 original size:68 final size:68
Alignment explanation
Indices: 43640832--43640994 Score: 186
Period size: 68 Copynumber: 2.4 Consensus size: 68
43640822 ATGGGAAAAT
* * * ** * * **
43640832 ATGAAACCATGTTGTGTAAGACCATAGCTGCACTATGGCAACATGTGAAGTCTGCCAGGACAA-T
1 ATGACACCATATTGTGTAAGACCATAGCAGCACTATAACAACATATGAAATCCACCAGGA-AAGT
43640896 AAAC
65 AAAC
43640900 ATGACACCATATTGTGTAAGACCATAGCAG-AGCTATAACAACATATGAAATCCACCAGGAAAGT
1 ATGACACCATATTGTGTAAGACCATAGCAGCA-CTATAACAACATATGAAATCCACCAGGAAAGT
43640964 AAAC
65 AAAC
* * *
43640968 GTGACATCATATAGTGTAAGACCATAG
1 ATGACACCATATTGTGTAAGACCATAG
43640995 TTAGGCTATG
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
67 3 0.04
68 78 0.96
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (68 bp):
ATGACACCATATTGTGTAAGACCATAGCAGCACTATAACAACATATGAAATCCACCAGGAAAGTA
AAC
Found at i:43641003 original size:68 final size:68
Alignment explanation
Indices: 43640886--43641036 Score: 171
Period size: 68 Copynumber: 2.2 Consensus size: 68
43640876 GTGAAGTCTG
*
43640886 CCAGGACAA-TAAACATGACACCATATTGTGTAAGACCATAGCAGAGCTATAACAACATATGAAA
1 CCAGGA-AAGTAAACATGACACCATATAGTGTAAGACCATAGCAGAGCTATAACAACATATGAAA
*
43640950 TCCA
65 CCCA
* * * ** * *
43640954 CCAGGAAAGTAAACGTGACATCATATAGTGTAAGACCATAGTTAG-GCTATGGCAATATATGAAG
1 CCAGGAAAGTAAACATGACACCATATAGTGTAAGACCATAG-CAGAGCTATAACAACATATGAAA
*
43641018 CCCG
65 CCCA
*
43641022 CCAGGACAGTAAACA
1 CCAGGAAAGTAAACA
43641037 AGGAAGCCGT
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
67 2 0.03
68 65 0.94
69 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (68 bp):
CCAGGAAAGTAAACATGACACCATATAGTGTAAGACCATAGCAGAGCTATAACAACATATGAAAC
CCA
Found at i:43659567 original size:24 final size:24
Alignment explanation
Indices: 43659540--43659588 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
43659530 ATCCCAATTG
43659540 CTAGAATCAAATTTCAAAAAATAA
1 CTAGAATCAAATTTCAAAAAATAA
43659564 CTAGAATCAAATTTCAAAAAATAA
1 CTAGAATCAAATTTCAAAAAATAA
43659588 C
1 C
43659589 CATGTAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.14, G:0.04, T:0.24
Consensus pattern (24 bp):
CTAGAATCAAATTTCAAAAAATAA
Found at i:43661699 original size:39 final size:39
Alignment explanation
Indices: 43661645--43661725 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
43661635 AAGAAATTTA
43661645 AACGGATTCTTTTATATCGATGATAAATATAAACTATAT
1 AACGGATTCTTTTATATCGATGATAAATATAAACTATAT
43661684 AACGGATTCTTTTATATCGATGATAAATATAAACTATAT
1 AACGGATTCTTTTATATCGATGATAAATATAAACTATAT
43661723 AAC
1 AAC
43661726 TATCTAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.37
Consensus pattern (39 bp):
AACGGATTCTTTTATATCGATGATAAATATAAACTATAT
Found at i:43662044 original size:15 final size:15
Alignment explanation
Indices: 43662009--43662061 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
43661999 TTAATCATAT
* *
43662009 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
43662025 TTAAATATATTTTAA
1 TTAAATATAATTTAA
43662040 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
43662056 TAAAAT
1 TTAAAT
43662062 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:43662198 original size:155 final size:155
Alignment explanation
Indices: 43661916--43662359 Score: 843
Period size: 155 Copynumber: 2.9 Consensus size: 155
43661906 TAGAATACCC
* * * *
43661916 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATGGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
43661981 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
43662046 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
43662071 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
43662136 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
43662201 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
43662226 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
43662291 TTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
43662356 TATA
131 TATA
43662360 NNNNNNNNNN
Statistics
Matches: 284, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
155 284 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (155 bp):
TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
TATAATTTAATAAAATTCTTAATAA
Found at i:43662199 original size:15 final size:15
Alignment explanation
Indices: 43662164--43662216 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
43662154 TTAATCATAT
* *
43662164 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
43662180 TTAAATATATTTTAA
1 TTAAATATAATTTAA
43662195 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
43662211 TAAAAT
1 TTAAAT
43662217 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:43669392 original size:80 final size:81
Alignment explanation
Indices: 43669283--43669451 Score: 306
Period size: 80 Copynumber: 2.1 Consensus size: 81
43669273 AACTAAAACT
43669283 ATAAATATATATATGAAACTTTTAAATGTATATATAATATATCAAGAAACTAAAAATTATACTAG
1 ATAAATATATATATGAAACTTTTAAATGTATATATAATATATCAAGAAACTAAAAATTATACTAG
43669348 AAAAATGTATATATGA
66 AAAAATGTATATATGA
43669364 ATAAATATAT-TATGAAAAC-TTTAAATGTATATATAATATATCAAGAAACTAAAAATTATACTA
1 ATAAATATATATATG-AAACTTTTAAATGTATATATAATATATCAAGAAACTAAAAATTATACTA
43669427 GAAAAATGTATATATGA
65 GAAAAATGTATATATGA
*
43669444 AAAAATAT
1 ATAAATAT
43669452 TTAAAAACGT
Statistics
Matches: 86, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
80 72 0.84
81 14 0.16
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (81 bp):
ATAAATATATATATGAAACTTTTAAATGTATATATAATATATCAAGAAACTAAAAATTATACTAG
AAAAATGTATATATGA
Found at i:43673076 original size:122 final size:122
Alignment explanation
Indices: 43672859--43673103 Score: 445
Period size: 122 Copynumber: 2.0 Consensus size: 122
43672849 GAATGATACA
* *
43672859 ATAAAAATAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCTGGATTGAAACATACT
1 ATAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTGAAACATACT
43672924 CTAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACTTCAATCTTAT
66 CTAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACTTCAATCTTAT
*
43672981 ATAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCTAAGGTTTTACCCGGATTGAAACATACT
1 ATAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTGAAACATACT
* *
43673046 CTAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGATAACTTTAATCTTAT
66 CTAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACTTCAATCTTAT
43673103 A
1 A
43673104 GAGTATCTAT
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
122 118 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (122 bp):
ATAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTGAAACATACT
CTAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACTTCAATCTTAT
Found at i:43675954 original size:15 final size:15
Alignment explanation
Indices: 43675934--43675963 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
43675924 AAAAATTTAT
43675934 TTAATTAGGTGGAAC
1 TTAATTAGGTGGAAC
43675949 TTAATTAGGTGGAAC
1 TTAATTAGGTGGAAC
43675964 CGTCCGGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (15 bp):
TTAATTAGGTGGAAC
Found at i:43676778 original size:18 final size:18
Alignment explanation
Indices: 43676751--43676785 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
43676741 CAGGTGCGTT
* *
43676751 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
43676769 TCCTAACCCTTATATGT
1 TCCTAACCCTTATATGT
43676786 TCCCTTTTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.29, G:0.09, T:0.43
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:43677073 original size:21 final size:21
Alignment explanation
Indices: 43677049--43677092 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
43677039 TGCCCTACCG
43677049 GAGGAACCAAAATCC-CCGTCA
1 GAGGAACCAAAA-CCGCCGTCA
*
43677070 GAGGAACCACAACCGCCGTCA
1 GAGGAACCAAAACCGCCGTCA
43677091 GA
1 GA
43677093 AGCAAGACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.36, C:0.34, G:0.23, T:0.07
Consensus pattern (21 bp):
GAGGAACCAAAACCGCCGTCA
Found at i:43677356 original size:22 final size:22
Alignment explanation
Indices: 43677322--43677383 Score: 99
Period size: 22 Copynumber: 2.8 Consensus size: 22
43677312 AATGATTAAT
43677322 TTAA-TTAACAAACCCTAAACCA
1 TTAACTTAA-AAACCCTAAACCA
*
43677344 TTAACTTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCTAAACCA
43677366 TTAACTTAAAAACCCTAA
1 TTAACTTAAAAACCCTAA
43677384 CCCTAACCCT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
22 34 0.89
23 4 0.11
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (22 bp):
TTAACTTAAAAACCCTAAACCA
Found at i:43681055 original size:22 final size:23
Alignment explanation
Indices: 43681022--43681069 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
43681012 GGCATTACCT
*
43681022 TTTTGTTAAT-AATTTTATTTTTA
1 TTTTGTTAATAAATATTA-TTTTA
43681045 TTTT-TTAATAAATATTATTTTA
1 TTTTGTTAATAAATATTATTTTA
43681067 TTT
1 TTT
43681070 AGTAGTGTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (23 bp):
TTTTGTTAATAAATATTATTTTA
Found at i:43681566 original size:21 final size:21
Alignment explanation
Indices: 43681542--43681582 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
43681532 TGTTTTGTGA
*
43681542 TTTTTTA--TGAATGTTATTT
1 TTTTTTATTTGAAAGTTATTT
43681561 TTTTTTATTTGAAAGTTATTT
1 TTTTTTATTTGAAAGTTATTT
43681582 T
1 T
43681583 GTTAGTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
21 12 0.63
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.68
Consensus pattern (21 bp):
TTTTTTATTTGAAAGTTATTT
Found at i:43681645 original size:114 final size:108
Alignment explanation
Indices: 43681555--43682107 Score: 624
Period size: 114 Copynumber: 5.1 Consensus size: 108
43681545 TTTATGAATG
*
43681555 TTATTTTTTTTTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTAT
1 TTATTTTTTTTTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
*
43681620 TTAGTTTAGTGTTTTGTGAATTTTTATTAATG-AATTTTTTTT
66 TTAGTTTAGTGTTTTGTGAATTTTTATGAATGTAATTTTTTTT
* ** * * *
43681662 TAAAATTATTTTA--T---AGTTACTTT-TTAATAATTTATGATTAGGTTATAAATTGTTTGTGT
1 TTATTTTTTTTTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
*
43681721 TTAGTTTAGTATTTTGTG-ATTTTTATGAATGTAATTTTTTTT
66 TTAGTTTAGTGTTTTGTGAATTTTTATGAATGTAATTTTTTTT
** * * *
43681763 CTT-TTTTTAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTTGGTTATAAATTGTTTGTG
1 -TTATTTTTTTTTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
* *
43681827 TTTAGTTTAGTTTTTTGTG-ATTTTTCATGAATGTAAATATCTTTTT
65 TTTAGTTTAGTGTTTTGTGAATTTTT-ATGAATGT-AAT-TTTTTTT
* * * *
43681873 GTATTTTTTAAATTATTTGAAAGTCATTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGT
1 TTATTTTTT--TTTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGT
* * *
43681938 ATTTAGTTTAATGTTTATTGTGATTTTTTTATGAATGTAAAATTTTTTGTT
64 GTTTAGTTTAGTG-TT-TTGTGA-ATTTTTATGAATGT--AATTTTTT-TT
* *
43681989 TT-TTTTTTAATTATTTGAAAGTTATTTTGTTAGTAATTTTTGATTAGGTTATAAATTGTTTGTG
1 TTATTTTTT-TTTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
* * *
43682053 TTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGCAAATTTTGTTAT
65 TTTAGTTTAGTG-TT-TTGTGAATTTTTATGAATG-TAATTTT-TTTT
43682101 TTATTTT
1 TTATTTT
43682108 AAAGTTATTT
Statistics
Matches: 383, Mismatches: 40, Indels: 40
0.83 0.09 0.09
Matches are distributed among these distances:
100 12 0.03
101 66 0.17
102 9 0.02
103 1 0.00
105 1 0.00
106 8 0.02
107 66 0.17
108 8 0.02
109 4 0.01
110 11 0.03
112 68 0.18
113 21 0.05
114 78 0.20
115 18 0.05
116 12 0.03
ACGTcount: A:0.25, C:0.01, G:0.14, T:0.60
Consensus pattern (108 bp):
TTATTTTTTTTTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
TTAGTTTAGTGTTTTGTGAATTTTTATGAATGTAATTTTTTTT
Found at i:43681815 original size:208 final size:219
Alignment explanation
Indices: 43681553--43682102 Score: 709
Period size: 208 Copynumber: 2.5 Consensus size: 219
43681543 TTTTTATGAA
*
43681553 TGTTATTTTTTT--TTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTT
1 TGTTCTTTTTTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTT
* * * *
43681616 GTATTTAGTTTAGTGTTTTGTGAATTTTTATTAATG-A-A-TTT-T-TTTTTAAAATTATTTTAT
66 GTGTTTAGTTTAGTGTTTTGTGAATTTTTATGAATGAATATTTTGTATTTTTAAAATTATTTGAA
* *
43681676 AGTTACTTT-TTAATAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTT-A-GTATT-TTG
131 AGTCACTTTGTTAATAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTAATGT-TTATTG
43681737 TGA-TTTTTATGAATGT-AATTTTT
195 TGATTTTTTATGAATGTAAATTTTT
* * *
43681760 T-TTCTTTTTTTAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTTGGTTATAAATTGTTT
1 TGTTCTTTTTTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTT
* *
43681824 GTGTTTAGTTTAGTTTTTTGTG-ATTTTTCATGAATGTAAATATCTTTTTGTATTTTTTAAATTA
66 GTGTTTAGTTTAGTGTTTTGTGAATTTTT-ATGAATG--AATA---TTTTGTATTTTTAAAATTA
* * *
43681888 TTTGAAAGTCATTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGTATTTAGTTTAATGTT
125 TTTGAAAGTCACTTTGTTAATAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTAATGTT
43681953 TATTGTGATTTTTTTATGAATGTAAAATTTTT
190 TATTGTGA-TTTTTTATGAATGT-AAATTTTT
* *
43681985 TGTTTTTTTTTTAATTATTTGAAAGTTATTTTGTTAGTAATTTTTGATTAGGTTATAAATTGTTT
1 TGTTCTTTTTTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTT
*
43682050 GTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGCAA-ATTTTGTTATTT
66 GTGTTTAGTTTAGTG-TT-TTGTGAATTTTTATGAATG-AATATTTTG-TATTT
43682103 ATTTTAAAGT
Statistics
Matches: 294, Mismatches: 23, Indels: 35
0.84 0.07 0.10
Matches are distributed among these distances:
206 9 0.03
207 7 0.02
208 74 0.25
211 1 0.00
212 1 0.00
216 3 0.01
217 1 0.00
218 22 0.07
219 40 0.14
220 3 0.01
221 8 0.03
223 18 0.06
224 5 0.02
225 8 0.03
226 73 0.25
227 4 0.01
228 12 0.04
229 5 0.02
ACGTcount: A:0.25, C:0.01, G:0.15, T:0.59
Consensus pattern (219 bp):
TGTTCTTTTTTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTT
GTGTTTAGTTTAGTGTTTTGTGAATTTTTATGAATGAATATTTTGTATTTTTAAAATTATTTGAA
AGTCACTTTGTTAATAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTAATGTTTATTGT
GATTTTTTATGAATGTAAATTTTT
Found at i:43683341 original size:22 final size:19
Alignment explanation
Indices: 43683301--43683341 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
43683291 GTTATAAATG
*
43683301 TAAATTTTTTTGTGTTTTT
1 TAAATTTTTTTATGTTTTT
43683320 TAAATTATTTTTATGTTATTT
1 TAAATT-TTTTTATGTT-TTT
43683341 T
1 T
43683342 GTTAGTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 9 0.47
21 4 0.21
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (19 bp):
TAAATTTTTTTATGTTTTT
Found at i:43687666 original size:108 final size:105
Alignment explanation
Indices: 43687475--43687720 Score: 293
Period size: 108 Copynumber: 2.3 Consensus size: 105
43687465 TTTATAATAG
* * **
43687475 TTACTAACAAAATAACGTTCAAATAAATTAAAAAATGTTAAAAGATTACATTCATAACCTAACAA
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAGATTACATTCATAACCTAACAA
* *
43687540 ATCACAATAAACCCTAAAC-AAACAATTAACCTAATCACAAAAC
66 ATCACAATAAACACTAAACTAAACAAATAA--T--TCACAAAAC
*
43687583 TTACTAACAAAATAACTTTAAAATAAATTAAAAATTAATAAAA-ATTA-ATATCCATAACCTAAC
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAGATTACAT-T-CATAACCTAAC
* * * * *
43687646 AAATCACAATAAACATTAAACTAAACAAATAATTTATAATAG
64 AAATCACAATAAACACTAAACTAAACAAATAATTCACAAAAC
*
43687688 TAACTAACAAAA-AACTTTAAAATAAATTAAAAA
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAA
43687721 CAACATAAAA
Statistics
Matches: 122, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
104 21 0.17
105 16 0.13
106 2 0.02
107 6 0.05
108 68 0.56
109 9 0.07
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.26
Consensus pattern (105 bp):
TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAGATTACATTCATAACCTAACAA
ATCACAATAAACACTAAACTAAACAAATAATTCACAAAAC
Found at i:43687706 original size:25 final size:25
Alignment explanation
Indices: 43687664--43687711 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
43687654 ATAAACATTA
* *
43687664 AACTAAACAAATAATTTATAATAGT
1 AACTAAACAAAAAATTTAAAATAGT
43687689 AACT-AACAAAAAACTTTAAAATA
1 AACTAAACAAAAAA-TTTAAAATA
43687712 AATTAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.27
Consensus pattern (25 bp):
AACTAAACAAAAAATTTAAAATAGT
Found at i:43687815 original size:14 final size:14
Alignment explanation
Indices: 43687796--43687822 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
43687786 CATTCTATTT
43687796 AAAAACAAAAAAAA
1 AAAAACAAAAAAAA
43687810 AAAAACAAAAAAA
1 AAAAACAAAAAAA
43687823 CCTTATCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAACAAAAAAAA
Found at i:43695711 original size:19 final size:18
Alignment explanation
Indices: 43695687--43695729 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
43695677 TGGGCCTCGT
43695687 TGGGCCAAAATGGGCTGTG
1 TGGGCCAAAATGGGCT-TG
*
43695706 TGGGCC-CAATGGGCTTG
1 TGGGCCAAAATGGGCTTG
43695723 TGGGCCA
1 TGGGCCA
43695730 CACAGATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 8 0.36
19 6 0.27
ACGTcount: A:0.16, C:0.21, G:0.42, T:0.21
Consensus pattern (18 bp):
TGGGCCAAAATGGGCTTG
Found at i:43696126 original size:27 final size:27
Alignment explanation
Indices: 43696080--43696492 Score: 339
Period size: 27 Copynumber: 15.4 Consensus size: 27
43696070 CCCAATATTT
* *
43696080 GTAAAATGACTGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
** *
43696107 GTAAAATGACCAAAAAACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
*
43696134 GTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
43696161 GTAAAATGATCG-AAAAACCTTCATAGG
1 GTAAAATGACCGTAATACCCCT-ATAGG
* *
43696188 GTAAAATGATCGTAATGTCCCCT-TAGG
1 GTAAAATGACCGTAAT-ACCCCTATAGG
* * *
43696215 GTAAAATAACCGTAATACCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * **
43696242 TTAAAATAATCGTAATAATCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
43696269 GTAAAATGACC-AAAAAACCCTATAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * **
43696295 GTAAAATAATCGTAATGCCCCCGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
43696322 GTAAAATGACTGTAATGCCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
43696349 GTAAAATGACCGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
43696376 GTAAAATGACCATAATGCCCATGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
*
43696403 GTAAAATGACCGTAATACCCCCATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* *** *
43696430 GTTAAATGACTAAAATACCCCTATAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
43696457 GTAAAATGATCGTAATGCCCCTAGAGG
1 GTAAAATGACCGTAATACCCCTATAGG
43696484 GT-AAATGAC
1 GTAAAATGAC
43696493 TATTTTGCCC
Statistics
Matches: 307, Mismatches: 74, Indels: 11
0.78 0.19 0.03
Matches are distributed among these distances:
26 36 0.12
27 266 0.87
28 2 0.01
29 3 0.01
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:43696162 original size:54 final size:54
Alignment explanation
Indices: 43696080--43696492 Score: 386
Period size: 54 Copynumber: 7.7 Consensus size: 54
43696070 CCCAATATTT
* * * * *
43696080 GTAAAATGACTGTAATACCCCTGTAGGGTAAAATGACCAAAAAACCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAAAATACCCCTATAAG
* * *
43696134 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGATCGAAAA-A-CCTTCATAGG
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGA-CCAAAATACCCCT-ATAAG
* * ** *
43696188 GTAAAATGATCGTAATGTCCCCT-TAGGGTAAAATAACCGTAATACCCCTGTAAG
1 GTAAAATGACCGTAATG-CCCCTATAGGGTAAAATGACCAAAATACCCCTATAAG
* * * *** *
43696242 TTAAAATAATCGTAATAATCCTATAGGGTAAAATGACCAAAA-AACCCTATAAG
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAAAATACCCCTATAAG
* * ** *** * *
43696295 GTAAAATAATCGTAATGCCCCCGTAGGGTAAAATGACTGTAATGCCCCTGTAAG
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAAAATACCCCTATAAG
* * * * * * *
43696349 GTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCATAATGCCCATGTAGG
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAAAATACCCCTATAAG
* * * *
43696403 GTAAAATGACCGTAATACCCCCATAGGGTTAAATGACTAAAATACCCCTATAAG
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAAAATACCCCTATAAG
* *
43696457 GTAAAATGATCGTAATGCCCCTAGAGGGT-AAATGAC
1 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGAC
43696493 TATTTTGCCC
Statistics
Matches: 294, Mismatches: 58, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
53 58 0.20
54 223 0.76
55 13 0.04
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (54 bp):
GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAAAATACCCCTATAAG
Found at i:43696524 original size:26 final size:25
Alignment explanation
Indices: 43696472--43696548 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 25
43696462 ATGATCGTAA
*
43696472 TGCCCCTAGAGGGTAAATGACTATTT
1 TGCCCCT-GAGTGTAAATGACTATTT
* *
43696498 TGCCCCTCGAGTGTAAATGATTGTTT
1 TGCCCCT-GAGTGTAAATGACTATTT
* *
43696524 TGTCCGTGA-TGTAAATGACTGATTT
1 TGCCCCTGAGTGTAAATGACT-ATTT
43696549 GTCTGTGATT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 10 0.24
25 5 0.12
26 27 0.64
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (25 bp):
TGCCCCTGAGTGTAAATGACTATTT
Found at i:43696613 original size:24 final size:24
Alignment explanation
Indices: 43696511--43696607 Score: 149
Period size: 24 Copynumber: 4.0 Consensus size: 24
43696501 CCCTCGAGTG
* * *
43696511 TAAATGATTGTTTTGTCCGTGATG
1 TAAATGATTGATTTGTCTGTGATT
*
43696535 TAAATGACTGATTTGTCTGTGATT
1 TAAATGATTGATTTGTCTGTGATT
*
43696559 TAAATGATTGATTTTTCTGTGATT
1 TAAATGATTGATTTGTCTGTGATT
43696583 TAAATGATTGATTTGTCTGTGATT
1 TAAATGATTGATTTGTCTGTGATT
43696607 T
1 T
43696608 GTATGACTGA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.49
Consensus pattern (24 bp):
TAAATGATTGATTTGTCTGTGATT
Found at i:43696618 original size:24 final size:24
Alignment explanation
Indices: 43696511--43696619 Score: 137
Period size: 24 Copynumber: 4.5 Consensus size: 24
43696501 CCCTCGAGTG
* * * *
43696511 TAAATGATTGTTTTGTCCGTGATG
1 TAAATGACTGATTTGTCTGTGATT
43696535 TAAATGACTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
* *
43696559 TAAATGATTGATTTTTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
*
43696583 TAAATGATTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
**
43696607 TGTATGACTGATT
1 TAAATGACTGATT
43696620 CTGAGCATGG
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 75 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.49
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATT
Found at i:43696744 original size:27 final size:27
Alignment explanation
Indices: 43696688--43696745 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
43696678 GGAAGTACTG
*
43696688 TACTGGTGGCTCTGCCACAATCACTGT
1 TACTGGTGGCTCTGCCACAATCACTAT
43696715 TACTGGTGGCT-TGGCCACATAT-ACTAT
1 TACTGGTGGCTCT-GCCACA-ATCACTAT
43696742 TACT
1 TACT
43696746 AGCAGCTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 1 0.04
27 25 0.89
28 2 0.07
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (27 bp):
TACTGGTGGCTCTGCCACAATCACTAT
Found at i:43696959 original size:32 final size:32
Alignment explanation
Indices: 43696868--43696969 Score: 107
Period size: 32 Copynumber: 3.2 Consensus size: 32
43696858 TTTGCTGCGA
* *
43696868 TGCTATTGACGGCTTTGTGCCGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
* * * * * *
43696900 CGTTACTGATGGCTGTGTGCTGGTCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
* *
43696932 TGCTACTGATGGCTTTATGCCAATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
43696964 TG-TACT
1 TGCTACT
43696970 TAGGGATTGT
Statistics
Matches: 54, Mismatches: 16, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
31 4 0.07
32 50 0.93
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (32 bp):
TGCTACTGATGGCTTTGTGCCGATCATATTAC
Found at i:43705146 original size:42 final size:42
Alignment explanation
Indices: 43705060--43705146 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
43705050 TGCCAGGCTG
*
43705060 TGTAACTTTCGAAATGGCCTCACACGCCCGTGTGTCAGGTCA
1 TGTAACTTTCGAAATGGCCTCACACGCCCGTGTGTCAGGCCA
*
43705102 TGTAACTTTTGAAATGGCCTCACACGCCCGTGT-TCCAGGCCA
1 TGTAACTTTCGAAATGGCCTCACACGCCCGTGTGT-CAGGCCA
43705144 TGT
1 TGT
43705147 GCTAGGTAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAACTTTCGAAATGGCCTCACACGCCCGTGTGTCAGGCCA
Found at i:43716306 original size:59 final size:60
Alignment explanation
Indices: 43716238--43716362 Score: 218
Period size: 60 Copynumber: 2.1 Consensus size: 60
43716228 ACATTGAACA
*
43716238 TTAAA-AAATATTTCTTTTTTTAATT-TTTTTCCATATCATATATTTTAACTTTTTAACT
1 TTAAATAAATACTTCTTTTTTTAATTCTTTTTCCATATCATATATTTTAACTTTTTAACT
*
43716296 TTAAATAAATACTTCTTTTTTTATTTCTTTTTCCATATCATATATTTTAACTTTTTAACT
1 TTAAATAAATACTTCTTTTTTTAATTCTTTTTCCATATCATATATTTTAACTTTTTAACT
43716356 TTAAATA
1 TTAAATA
43716363 TTTATGTAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
58 5 0.08
59 18 0.29
60 40 0.63
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (60 bp):
TTAAATAAATACTTCTTTTTTTAATTCTTTTTCCATATCATATATTTTAACTTTTTAACT
Found at i:43719133 original size:27 final size:27
Alignment explanation
Indices: 43719093--43719235 Score: 189
Period size: 27 Copynumber: 5.3 Consensus size: 27
43719083 AAGGACTGAA
**
43719093 TAAAATGATTGAATTACCCCCATAGGG
1 TAAAATGACCGAATTACCCCCATAGGG
* * *
43719120 TAAAATGATCGAATTACTCCTATAGGG
1 TAAAATGACCGAATTACCCCCATAGGG
* * *
43719147 TAGAATGACCGAATTACCCTCACAGGG
1 TAAAATGACCGAATTACCCCCATAGGG
*
43719174 TAAAATGACCAAATTA-CCCCATAGGG
1 TAAAATGACCGAATTACCCCCATAGGG
*
43719200 TAAAATGACCGAATTAGCCCCATAGGG
1 TAAAATGACCGAATTACCCCCATAGGG
43719227 TAAAATGAC
1 TAAAATGAC
43719236 TATTATACCC
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.23
27 78 0.77
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
TAAAATGACCGAATTACCCCCATAGGG
Found at i:43719227 original size:53 final size:53
Alignment explanation
Indices: 43719093--43719235 Score: 189
Period size: 53 Copynumber: 2.7 Consensus size: 53
43719083 AAGGACTGAA
** * * *
43719093 TAAAATGATTGAATTACCCCCATAGGGTAAAATGATCGAATTACTCCTATAGGG
1 TAAAATGACCGAATTA-CCCCATAGGGTAAAATGACCAAATTACTCCCATAGGG
* *
43719147 TAGAATGACCGAATTACCCTCACAGGGTAAAATGACCAAATTAC-CCCATAGGG
1 TAAAATGACCGAATTACCC-CATAGGGTAAAATGACCAAATTACTCCCATAGGG
43719200 TAAAATGACCGAATTAGCCCCATAGGGTAAAATGAC
1 TAAAATGACCGAATTA-CCCCATAGGGTAAAATGAC
43719236 TATTATACCC
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
53 41 0.53
54 37 0.47
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.22
Consensus pattern (53 bp):
TAAAATGACCGAATTACCCCATAGGGTAAAATGACCAAATTACTCCCATAGGG
Done.