Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 14 of 141
Found at i:4568251 original size:27 final size:27
Alignment explanation
Indices: 4568178--4568251 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
4568168 TCTCAAAGGG
* *
4568178 AAAATGACCGAAATACCTCC-GAAGGGT
1 AAAATGACTGAAATACC-CCTGAAGGCT
* *
4568205 AAAATGACTAAAATATCCCTGAAGGCT
1 AAAATGACTGAAATACCCCTGAAGGCT
* *
4568232 GAAATGATTGAAATACCCCT
1 AAAATGACTGAAATACCCCT
4568252 ATAGGGTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.05
27 36 0.95
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (27 bp):
AAAATGACTGAAATACCCCTGAAGGCT
Found at i:4568586 original size:28 final size:28
Alignment explanation
Indices: 4568555--4568662 Score: 171
Period size: 28 Copynumber: 3.9 Consensus size: 28
4568545 TTTCTGTATA
*
4568555 GGGCTAAGGCCCACACTGTTACTGCTTT
1 GGGCTAAGGCCCAGACTGTTACTGCTTT
4568583 GGGCTAAGGCCCAGACTGTTACTGCTTT
1 GGGCTAAGGCCCAGACTGTTACTGCTTT
*
4568611 GGGCTAAGGCCCAGACTGTTACTGCTTA
1 GGGCTAAGGCCCAGACTGTTACTGCTTT
* * *
4568639 GGGCTGAGGCCCAGATTATTACTG
1 GGGCTAAGGCCCAGACTGTTACTG
4568663 TATGTCGTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 75 1.00
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (28 bp):
GGGCTAAGGCCCAGACTGTTACTGCTTT
Found at i:4569608 original size:26 final size:26
Alignment explanation
Indices: 4569572--4569622 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4569562 CCTAGGCGTC
4569572 AAGATGCAACACTAGTACATCTCTAT
1 AAGATGCAACACTAGTACATCTCTAT
*
4569598 AAGATGCAACACTCGTACATCTCTA
1 AAGATGCAACACTAGTACATCTCTA
4569623 CACAGAGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (26 bp):
AAGATGCAACACTAGTACATCTCTAT
Found at i:4579323 original size:35 final size:35
Alignment explanation
Indices: 4579284--4579354 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
4579274 CTACAACCTA
4579284 TATTTGCTGTTATCTAACATCAAATCCTTGTGGTT
1 TATTTGCTGTTATCTAACATCAAATCCTTGTGGTT
* *
4579319 TATTTGCTGTTATTTAGCATCAAATCCTTGTGGTT
1 TATTTGCTGTTATCTAACATCAAATCCTTGTGGTT
4579354 T
1 T
4579355 TACTATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.48
Consensus pattern (35 bp):
TATTTGCTGTTATCTAACATCAAATCCTTGTGGTT
Found at i:4583982 original size:26 final size:27
Alignment explanation
Indices: 4583946--4584017 Score: 101
Period size: 26 Copynumber: 2.7 Consensus size: 27
4583936 CCGTTACATA
4583946 TATGCTCACACGAGCTGTGAAAA-GAG
1 TATGCTCACACGAGCTGTGAAAATGAG
* * *
4583972 TATGCTTACACGAGTTGTGAAAATGGG
1 TATGCTCACACGAGCTGTGAAAATGAG
*
4583999 TCTGCTCACACGAGCTGTG
1 TATGCTCACACGAGCTGTG
4584018 GGTCGGAATG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 21 0.54
27 18 0.46
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (27 bp):
TATGCTCACACGAGCTGTGAAAATGAG
Found at i:4585216 original size:16 final size:16
Alignment explanation
Indices: 4585195--4585229 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
4585185 AAAATTTCTT
4585195 AATGAAATTTTTATAC
1 AATGAAATTTTTATAC
*
4585211 AATGAATTTTTTATAC
1 AATGAAATTTTTATAC
4585227 AAT
1 AAT
4585230 ATTACTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (16 bp):
AATGAAATTTTTATAC
Found at i:4616077 original size:13 final size:13
Alignment explanation
Indices: 4616059--4616088 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
4616049 GTATACAAAA
4616059 ATTTCCCCTTACC
1 ATTTCCCCTTACC
4616072 ATTTCCCCTTACC
1 ATTTCCCCTTACC
4616085 -TTTC
1 ATTTC
4616089 ATGTGTCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTTCCCCTTACC
Found at i:4618928 original size:75 final size:75
Alignment explanation
Indices: 4618805--4619086 Score: 297
Period size: 75 Copynumber: 3.7 Consensus size: 75
4618795 TGATTCCCCC
**
4618805 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGTTGGTTGCTAAGTGCTGATCCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGCGGTTGCTAAGTGCTGATCCCACCGTATC
4618870 TTAAATGTGA
66 TTAAATGTGA
* * ***
4618880 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGCGGTTGCTAAGTGATGAT---GGGGT-TG
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGCGGTTGCTAAGTGCTGATCCCACCGTAT-
*
4618941 C-TAAGTGCTGA
65 CTTAAATG-TGA
* * * *
4618952 TTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGTC-GTTGCTAAGTGTTAATCCC
1 -------AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGG-CGGTTGCTAAGTGCTGATCCC
4619016 ACCGTATCTTAAATGTGA
58 ACCGTATCTTAAATGTGA
* * *
4619034 AAGGGGTTGCTAAGTGCTGATTCCCCGACTTATTGGTGGTTGCTAAGTGCTGA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGCGGTTGCTAAGTGCTGA
4619087 ATCTACTGAT
Statistics
Matches: 167, Mismatches: 24, Indels: 32
0.75 0.11 0.14
Matches are distributed among these distances:
71 6 0.04
72 6 0.04
75 95 0.57
79 47 0.28
80 1 0.01
82 6 0.04
83 6 0.04
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGCGGTTGCTAAGTGCTGATCCCACCGTATC
TTAAATGTGA
Found at i:4619060 original size:154 final size:154
Alignment explanation
Indices: 4618780--4619082 Score: 525
Period size: 154 Copynumber: 2.0 Consensus size: 154
4618770 AAATATAAAG
* * * *
4618780 GGGGTTGCTAAGTGTTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGTTGGT
1 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGTCGT
*
4618845 TGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGACT
66 TGCTAAGTGCTAATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGACT
4618910 CATTGGCGGTTGCTAAGTGATGAT
131 CATTGGCGGTTGCTAAGTGATGAT
*
4618934 GGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGTCGT
1 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGTCGT
*
4618999 TGCTAAGTGTTAATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGACT
66 TGCTAAGTGCTAATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGACT
* *
4619064 TATTGGTGGTTGCTAAGTG
131 CATTGGCGGTTGCTAAGTG
4619083 CTGAATCTAC
Statistics
Matches: 140, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
154 140 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.31
Consensus pattern (154 bp):
GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGTCGT
TGCTAAGTGCTAATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGACT
CATTGGCGGTTGCTAAGTGATGAT
Found at i:4621611 original size:22 final size:22
Alignment explanation
Indices: 4621583--4621627 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
4621573 TCATATGTAT
4621583 GTATGAATTTAGTATCTAGTAA
1 GTATGAATTTAGTATCTAGTAA
4621605 GTATGAATTTAGTATCTAGTAA
1 GTATGAATTTAGTATCTAGTAA
4621627 G
1 G
4621628 AATTTTCCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (22 bp):
GTATGAATTTAGTATCTAGTAA
Found at i:4634258 original size:25 final size:23
Alignment explanation
Indices: 4634230--4634286 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
4634220 CTTTGAATTG
4634230 GTATGCTCACTCGAGCTGTAAATCA
1 GTATGCTCAC-C-AGCTGTAAATCA
* *
4634255 GTATGTTGTCACCTGCTGTAAATCA
1 GTATG--CTCACCAGCTGTAAATCA
4634280 GTATGCT
1 GTATGCT
4634287 TTCACGAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
23 1 0.04
25 21 0.78
26 1 0.04
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (23 bp):
GTATGCTCACCAGCTGTAAATCA
Found at i:4641566 original size:25 final size:25
Alignment explanation
Indices: 4641534--4641596 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
4641524 ACAAGCAATT
**
4641534 AATCGGTATGCTCATTTGAGCTGTA
1 AATCGGTATGCTCACATGAGCTGTA
* *
4641559 AATTGGTATGCTCCCATGAGCTGTA
1 AATCGGTATGCTCACATGAGCTGTA
4641584 AATCGGTATGCTC
1 AATCGGTATGCTC
4641597 TCATAAATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (25 bp):
AATCGGTATGCTCACATGAGCTGTA
Found at i:4643477 original size:13 final size:13
Alignment explanation
Indices: 4643459--4643483 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4643449 GGGTGTTACG
4643459 AACTTGGTTCCTC
1 AACTTGGTTCCTC
4643472 AACTTGGTTCCT
1 AACTTGGTTCCT
4643484 TACACATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.16, T:0.40
Consensus pattern (13 bp):
AACTTGGTTCCTC
Found at i:4644563 original size:571 final size:567
Alignment explanation
Indices: 4643484--4644765 Score: 1700
Period size: 571 Copynumber: 2.3 Consensus size: 567
4643474 CTTGGTTCCT
* * * *
4643484 TACACATCAAACACAATACAAAGGCATTACAAACAACAATAAACACAATTAAATCATTCTAAAAT
1 TACACATCAAACATAATACGAAGGCATTACGAACAACAACAAACACAATTAAATCATTCTAAAAT
* * * *
4643549 CACAGA-TCATATCCTCTTAACCTTTATATCGAAGACTTAACTAGTTTTACCGAAATA-GTTGTT
66 CACAAATTCAAATCCTCTTAACCTTTATACCGAAGACTTAACTAGTTTTGCCGAAATAGGTT-TT
* * ** * *
4643612 CAACCTCTCAAATCTTTTCAGCTTAGATTTCTACTTCATACATCCTAAATAACATCTAATTATAA
130 -AACCACTCAAATCTTTTAAGAATAGATTCCGACTTCATACATCCTAAATAACATCTAATTATAA
* *
4643677 ATCTAAACAAGTGCTAACATATTGCTTAGTGAGCCAAACTCACTTTCACATTAGAGGTGTGTGCA
194 ATCTAAACAAGTGCTAACATATTGCTTAGTGAG-CAAACTCACTTTCACATCAAAGGTGTGTGCA
***** * * * *
4643742 TAAATCAAACTATTTGTAAGGCATATTAAGTCACAATTCACCATATACAACCACATCACACCTTT
258 TAAATCAAACTACCCACAAGACATATCAAGTCACAATTCAACATATACAACCACATCACACATTT
* * * *
4643807 ATCGATTCATATCACATATAATCTTATTTATCAAATAATCAAAACTCAAGTTAGAATACTTACTT
323 AGCCATTCACATCACATATAATCTTATTTATCAAATAATCAAAACTCAAGTAAGAATACTTACTT
* * * *
4643872 TTAGGACTTAGATTAGATGTTTTGATCACCTAATCCCCCTTTAACTCACTATTTTGTGTCTTAAT
388 CTAGGACTTAGATAAGATGTTTTGATCACCTAAGCCCCCTTTAACTCACTATTTTGTGTATTAAT
*
4643937 TATAGCACACAAGACACCTTACCTTAGCAACTTACTTCCACAACAAAGCTCAAGTAAGCTTTTGT
453 TATAACACACAAGACACCTTACCTTAGCAACTTACTTCCACAACAAAGCTCAAGTAAGCTTTTGT
* **
4644002 TTGCCTTTGTCCTTGGTTGCGGATGA-TCCCAAATGAGTTGGCAATTCACA
518 TTGCCTTTGTCCTTGCTTGC-GAACACTCCCAAATGAGTTGGCAATTCACA
* * ** *
4644052 TACACATCAAACATAATATGAAGGCATTACGAATAGTAACAAACACAATTAATTCATTCTAAAAT
1 TACACATCAAACATAATACGAAGGCATTACGAACAACAACAAACACAATTAAATCATTCTAAAAT
* * * **
4644117 -AAAAATTCAAATCCTCTTAACCTCTATACCGAAGATTTAACTAGTTTTGTAGAAATAGGTTTTG
66 CACAAATTCAAATCCTCTTAACCTTTATACCGAAGACTTAACTAGTTTTGCCGAAATAGGTTTT-
* *
4644181 AACCACTCAAATCTTGTCTAAGAATAGATTCCGACTTCATACATCCTAAATATCATTTAATTATA
130 AACCACTCAAATCTT-T-TAAGAATAGATTCCGACTTCATACATCCTAAATAACATCTAATTATA
* * *
4644246 GATCTAAACAAGTGCTAACATATTGCTCATTAG-GAG-AAACTCATTTTCATATCAAAGGTGTGT
193 AATCTAAACAAGTGCTAACATATTG--C-TTAGTGAGCAAACTCACTTTCACATCAAAGGTGTGT
* * * *
4644309 GCATAAGTGAAACTACCCACAAGACATATCCAGTCACATATTCAACATATACAATCACATCACAC
255 GCATAAATCAAACTACCCACAAGACATATCAAGTCACA-ATTCAACATATACAACCACATCACAC
* * *
4644374 ATTTAGCCATTCACATCATATATAATCTTGTTTATCAAATAATCAAAACTCAAGTAAGAGTACTT
319 ATTTAGCCATTCACATCACATATAATCTTATTTATCAAATAATCAAAACTCAAGTAAGAATACTT
*
4644439 ACTTCTAGGACTTAGATAAGATGTTTTGATCACCTAAGCCCCCTTTAACTCACTGTTTTGTGTAT
384 ACTTCTAGGACTTAGATAAGATGTTTTGATCACCTAAGCCCCCTTTAACTCACTATTTTGTGTAT
* *
4644504 TAATTATAACACACAAGAC-CGTTCACCTTAGCAACTTACTTCCATAACAAAGCTCAAGTAAGCT
449 TAATTATAACACACAAGACACCTT-ACCTTAGCAACTTACTTCCACAACAAAGCTCAAGTAAGCT
* * * *
4644568 TTTGTTTGCCTTTGTCCTTGCTTGCGAACACTCCCAAATGAGTTGGTACTTTAGA
513 TTTGTTTGCCTTTGTCCTTGCTTGCGAACACTCCCAAATGAGTTGGCAATTCACA
* * *
4644623 TACACATCAAAAATAATACGAAGGTATTACGAACAACAACAAACATAATTAAATCATTCTAAAAT
1 TACACATCAAACATAATACGAAGGCATTACGAACAACAACAAACACAATTAAATCATTCTAAAAT
* * * * *
4644688 CACAAATT--AATGTCTTTTAACCTTTATACCGAAGGCTTAACTGGTTTTGCCGAAATAGATGTT
66 CACAAATTCAAAT-CCTCTTAACCTTTATACCGAAGACTTAACTAGTTTTGCCGAAATAGGT-TT
*
4644751 TAACCACCCAAATCT
129 TAACCACTCAAATCT
4644766 CATTTTAAGT
Statistics
Matches: 615, Mismatches: 86, Indels: 23
0.85 0.12 0.03
Matches are distributed among these distances:
567 3 0.00
568 116 0.19
569 4 0.01
570 124 0.20
571 351 0.57
572 13 0.02
573 4 0.01
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (567 bp):
TACACATCAAACATAATACGAAGGCATTACGAACAACAACAAACACAATTAAATCATTCTAAAAT
CACAAATTCAAATCCTCTTAACCTTTATACCGAAGACTTAACTAGTTTTGCCGAAATAGGTTTTA
ACCACTCAAATCTTTTAAGAATAGATTCCGACTTCATACATCCTAAATAACATCTAATTATAAAT
CTAAACAAGTGCTAACATATTGCTTAGTGAGCAAACTCACTTTCACATCAAAGGTGTGTGCATAA
ATCAAACTACCCACAAGACATATCAAGTCACAATTCAACATATACAACCACATCACACATTTAGC
CATTCACATCACATATAATCTTATTTATCAAATAATCAAAACTCAAGTAAGAATACTTACTTCTA
GGACTTAGATAAGATGTTTTGATCACCTAAGCCCCCTTTAACTCACTATTTTGTGTATTAATTAT
AACACACAAGACACCTTACCTTAGCAACTTACTTCCACAACAAAGCTCAAGTAAGCTTTTGTTTG
CCTTTGTCCTTGCTTGCGAACACTCCCAAATGAGTTGGCAATTCACA
Found at i:4645457 original size:22 final size:21
Alignment explanation
Indices: 4645428--4645471 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
4645418 ATTTTAAAAT
*
4645428 TAACACAATTTTTAAAAT-TAA
1 TAACACAA-ATTTAAAATCTAA
4645449 TAACTACAAATTTAAAATCTAA
1 TAAC-ACAAATTTAAAATCTAA
4645471 T
1 T
4645472 TATTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
TAACACAAATTTAAAATCTAA
Found at i:4648733 original size:9 final size:9
Alignment explanation
Indices: 4648716--4648749 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
4648706 AGGTATATGT
*
4648716 AAAACAGAA
1 AAAAAAGAA
4648725 AAAAAAGAAA
1 AAAAAAG-AA
4648735 AAAAAAGAA
1 AAAAAAGAA
4648744 AAAAAA
1 AAAAAA
4648750 AAGGGGGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:4648752 original size:11 final size:10
Alignment explanation
Indices: 4648723--4648750 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
4648713 TGTAAAACAG
4648723 AAAAAAAAGA
1 AAAAAAAAGA
4648733 AAAAAAAAGA
1 AAAAAAAAGA
4648743 AAAAAAAA
1 AAAAAAAA
4648751 AGGGGGGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:4654432 original size:13 final size:13
Alignment explanation
Indices: 4654414--4654439 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4654404 ACCTAGAGAG
4654414 ATGATTCACTATC
1 ATGATTCACTATC
4654427 ATGATTCACTATC
1 ATGATTCACTATC
4654440 TTAGTATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
ATGATTCACTATC
Found at i:4678392 original size:9 final size:9
Alignment explanation
Indices: 4678378--4678420 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
4678368 ATATAAGACC
4678378 AAAATAATA
1 AAAATAATA
*
4678387 AAAATATTA
1 AAAATAATA
*
4678396 AATAAAAATA
1 AA-AATAATA
4678406 AAAATAATA
1 AAAATAATA
*
4678415 GAAATA
1 AAAATA
4678421 TTAGGTGAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (9 bp):
AAAATAATA
Found at i:4683328 original size:15 final size:16
Alignment explanation
Indices: 4683308--4683366 Score: 77
Period size: 15 Copynumber: 3.8 Consensus size: 16
4683298 TACAGTTTCT
*
4683308 TATAGTTTCACAA-TA
1 TATAGTTTCACAAGTC
*
4683323 TATAGTTTTCACAATTC
1 TATAG-TTTCACAAGTC
4683340 TATAGTTTCA-AAGTC
1 TATAGTTTCACAAGTC
4683355 TATAGTTTCACA
1 TATAGTTTCACA
4683367 TCTAAAGAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
15 19 0.49
16 14 0.36
17 6 0.15
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.42
Consensus pattern (16 bp):
TATAGTTTCACAAGTC
Found at i:4683334 original size:16 final size:17
Alignment explanation
Indices: 4683308--4683347 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
4683298 TACAGTTTCT
4683308 TATAG-TTTCACAA-TA
1 TATAGTTTTCACAATTA
*
4683323 TATAGTTTTCACAATTC
1 TATAGTTTTCACAATTA
4683340 TATAGTTT
1 TATAGTTT
4683348 CAAAGTCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.23
16 8 0.36
17 9 0.41
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.47
Consensus pattern (17 bp):
TATAGTTTTCACAATTA
Found at i:4687030 original size:102 final size:102
Alignment explanation
Indices: 4686846--4687030 Score: 271
Period size: 102 Copynumber: 1.8 Consensus size: 102
4686836 GAATATGAAT
* * * *
4686846 GGGTTGGTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTAATTCCCCTATTCATTGGTTGTT
1 GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTAATTCCCCGATTCATTGGTGGTT
* *
4686911 GCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGG
66 GCTAAGTGCGGAATCCACCGCATCTGAAATGTGAAGG
* ** * *
4686948 GGGTTGCTAAGTGCTGCTTCCCCCAAGGGGTTGCTGTGTGCTGATTCCTCGATTCATTGGTGGTT
1 GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTAATTCCCCGATTCATTGGTGGTT
4687013 GCTAAGTGCGGAATCCAC
66 GCTAAGTGCGGAATCCAC
4687031 TGATAACGGT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 72 1.00
ACGTcount: A:0.17, C:0.22, G:0.30, T:0.31
Consensus pattern (102 bp):
GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTAATTCCCCGATTCATTGGTGGTT
GCTAAGTGCGGAATCCACCGCATCTGAAATGTGAAGG
Found at i:4692018 original size:23 final size:23
Alignment explanation
Indices: 4691988--4692033 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
4691978 CAGGATTGCC
4691988 TTTAACTCCAAAGAAGAAAGATG
1 TTTAACTCCAAAGAAGAAAGATG
4692011 TTTAACTCCAAAGAAGAAAGATG
1 TTTAACTCCAAAGAAGAAAGATG
4692034 CTATTTGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22
Consensus pattern (23 bp):
TTTAACTCCAAAGAAGAAAGATG
Found at i:4693850 original size:27 final size:27
Alignment explanation
Indices: 4693806--4693858 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
4693796 ATTGAATATG
4693806 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
*
4693833 AAGGGGTTGCTGTA-TGCTGATTCCCC
1 AAGGGGTTGCT-AAGTGCTGATTCCCC
4693859 AATTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:4693993 original size:102 final size:101
Alignment explanation
Indices: 4693804--4693995 Score: 339
Period size: 102 Copynumber: 1.9 Consensus size: 101
4693794 ACATTGAATA
4693804 TGAAGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTATGCTGATTCCCCAATTCATTGG
1 TGAAGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTATGCTGATTCCCCAATTCATTGG
* *
4693869 TGGTTGCTAAGTACTGATTCCACCGCATCTGAAATG
66 TGGTTGCTAAGTACAGAATCCACCGCATCTGAAATG
4693905 TGAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTATGCTGATTCCCCAATTCATTG
1 TGAA-GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTATGCTGATTCCCCAATTCATTG
* *
4693970 GTGGTTGCTCAGTGCAGAATCCACCG
65 GTGGTTGCTAAGTACAGAATCCACCG
4693996 ATAACGGTTA
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
101 4 0.05
102 82 0.95
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (101 bp):
TGAAGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTATGCTGATTCCCCAATTCATTGG
TGGTTGCTAAGTACAGAATCCACCGCATCTGAAATG
Found at i:4698414 original size:26 final size:26
Alignment explanation
Indices: 4698385--4698437 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4698375 CGTTTCATAA
4698385 TTTTTCAGAAA-ATCAACTCATGTTCT
1 TTTTTCA-AAATATCAACTCATGTTCT
4698411 TTTTTCAAAATATCAACTCATGTTCT
1 TTTTTCAAAATATCAACTCATGTTCT
4698437 T
1 T
4698438 AGCTAAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (26 bp):
TTTTTCAAAATATCAACTCATGTTCT
Found at i:4698446 original size:26 final size:26
Alignment explanation
Indices: 4698396--4698446 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
4698386 TTTTCAGAAA
*** *
4698396 ATCAACTCATGTTCTTTTTTCAAAAT
1 ATCAACTCATGTTCTTAGCTAAAAAT
4698422 ATCAACTCATGTTCTTAGCTAAAAA
1 ATCAACTCATGTTCTTAGCTAAAAA
4698447 CGGATTTGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (26 bp):
ATCAACTCATGTTCTTAGCTAAAAAT
Found at i:4728605 original size:659 final size:663
Alignment explanation
Indices: 4727236--4728802 Score: 2616
Period size: 659 Copynumber: 2.4 Consensus size: 663
4727226 TAGAACGAAA
* * *
4727236 ATATTTTGAAATTTCTTAAGATTCTTGAACCAATATTTTCAATCAAATGAATTACAACGAACCAA
1 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
* * *
4727301 AGGTAATTATT-ATCTCTAAACTTGTTTATATGATGATTAG-AAATATTTTTACATGGTTTCAGA
66 AGGTAATTATTAAT-TCTAAACTTGTTTTTATGATGATTAGAAAAT-TTTTTACATGATTTGAGA
* * * *
4727364 GTCAATTACATGATTATTTTATCAATGTCATATTATTCAAAAGCTTAAGGTGTTTTAATGGTGGA
129 GTCAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGA
* ** * *
4727429 TCTTGAATTTTGGGAGGAAATCCACAAATCAATGGATGTTCTAACTCTAAATAGATCTATTAGAA
194 TCTTGAATTTTGAGAGGAAATCCACAAATCAACAGATGTCCTAACTCTAAATAGAACTATTAGAA
* *** *
4727494 GTTATTTACTCTTATTTACCAAGATTAAACATGATTTGTGGGGTAATTTGAAGAAATTTGAATTT
259 GGTATTTACTCTTATTTACCAAGATTAAACATGATTTGTAAAGTAATTTGAAGAAACTTGAATTT
* * *
4727559 CAACATCTTCATGAACCGACTTTCAAGATTGTTGTGAAATTGATTTAAATATGTGAAATTTTTAC
324 CAACATCTTCATGAACCAACTTTCAAGATTGTTGTGAAATTGATTTAAATATGTGAAATTTATAA
*
4727624 TTAGTTTATATGTAATTTGTTTAGCATTGATGTTTGGAAGTGATTAGGAGGGATGGAGGGTCGAT
389 TTAGTTTATACGTAATTTGTTTAGCATTGATGTTTGGAAGTGATTAGGAGGGATGGAGGGTCGAT
4727689 TTTGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAGTGAATT
454 TTTGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAGTGAATT
*
4727754 TCGATTAGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGTCTACTT
519 TCGATGAGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGTCTACTT
* * *
4727819 TACCTTTGTTGAAGCTTCGAGTCTTGAAGAGGACCGGGATAGCCAAAATTAGAACGAACTTTTCT
584 TACCTCTGTTGAAGCTTCGAGTCTTGAAGAGGACCGCGATAACCAAAATTAGAACGAACTTTTCT
4727884 CGAAAGTAGACAAAC
649 CGAAAGTAGACAAAC
4727899 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
1 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
4727964 AGGTAATTATTAATTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
66 AGGTAATTATTAATTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
4728029 CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
131 CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
* * *
4728094 TTGAAATTTGAGAGGAAATCCACAAATCAGCAGATGTCCTAACTCTAAATGGAACTATTAGAAGG
196 TTGAATTTTGAGAGGAAATCCACAAATCAACAGATGTCCTAACTCTAAATAGAACTATTAGAAGG
*
4728159 TATTTACTCTTATTTATCAAGATTAAACATGATTTGTAAAGTAATTTGAAGAAACTTGAATTTC-
261 TATTTACTCTTATTTACCAAGATTAAACATGATTTGTAAAGTAATTTGAAGAAACTTGAATTTCA
* * * *
4728223 A-A-CTTCTTGAACCAACATTTC-GGATTTTTGTGAAATTGATTT-AA-ATGTGTAATTTATAAT
326 ACATCTTCATGAACCAAC-TTTCAAGATTGTTGTGAAATTGATTTAAATATGTGAAATTTATAAT
*
4728283 TAGTTTATACGTAATTTGTTTAGTATT-ATTGTTTGGAAGTGATTA-GATGGGATGGAGAGGTCG
390 TAGTTTATACGTAATTTGTTTAGCATTGA-TGTTTGGAAGTGATTAGGA-GGGATGGAG-GGTCG
4728346 ATTTTGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAGTGAA
452 ATTTTGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAGTGAA
4728411 TTTCGATGAGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGTCTAC
517 TTTCGATGAGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGTCTAC
4728476 TTTACCTCTGTTGAAGCTTCGAGTCTTGAAGAGGACCGCGATAACCAAAATTAGAACGAACTTTT
582 TTTACCTCTGTTGAAGCTTCGAGTCTTGAAGAGGACCGCGATAACCAAAATTAGAACGAACTTTT
*
4728541 CTCGAAAGTAGACAAAG
647 CTCGAAAGTAGACAAAC
*
4728558 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTAGAACGAATCAA
1 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
*
4728623 AGGTAATTATTATTTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
66 AGGTAATTATTAATTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
4728688 CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
131 CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
* *
4728753 TTGAATTTTGAGAGGAAATCCACAAATCAA-AGGATGTTCTAACTCAAAAT
196 TTGAATTTTGAGAGGAAATCCACAAATCAACA-GATGTCCTAACTCTAAAT
4728803 TAAACATGAT
Statistics
Matches: 853, Mismatches: 44, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
657 3 0.00
658 64 0.08
659 451 0.53
660 31 0.04
661 5 0.01
662 1 0.00
663 292 0.34
664 6 0.01
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (663 bp):
ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
AGGTAATTATTAATTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
TTGAATTTTGAGAGGAAATCCACAAATCAACAGATGTCCTAACTCTAAATAGAACTATTAGAAGG
TATTTACTCTTATTTACCAAGATTAAACATGATTTGTAAAGTAATTTGAAGAAACTTGAATTTCA
ACATCTTCATGAACCAACTTTCAAGATTGTTGTGAAATTGATTTAAATATGTGAAATTTATAATT
AGTTTATACGTAATTTGTTTAGCATTGATGTTTGGAAGTGATTAGGAGGGATGGAGGGTCGATTT
TGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAGTGAATTTC
GATGAGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGTCTACTTTA
CCTCTGTTGAAGCTTCGAGTCTTGAAGAGGACCGCGATAACCAAAATTAGAACGAACTTTTCTCG
AAAGTAGACAAAC
Found at i:4729005 original size:659 final size:659
Alignment explanation
Indices: 4727236--4729184 Score: 2376
Period size: 659 Copynumber: 3.0 Consensus size: 659
4727226 TAGAACGAAA
* * *
4727236 ATATTTTGAAATTTCTTAAGATTCTTGAACCAATATTTTCAATCAAATGAATTACAACGAACCAA
1 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
* * *
4727301 AGGTAATTATT-ATCTCTAAACTTGTTTATATGATGATTAG-AAATATTTTTACATGGTTTCAGA
66 AGGTAATTATTAAT-TCTAAACTTGTTTTTATGATGATTAGAAAAT-TTTTTACATGATTTGAGA
* * * *
4727364 GTCAATTACATGATTATTTTATCAATGTCATATTATTCAAAAGCTTAAGGTGTTTTAATGGTGGA
129 GTCAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGA
* * * * * *
4727429 TCTTGAATTTTGGGAGGAAATCCACAAATCA-ATGGATGTTCTAACTCTAAAT-AGATCTATTAG
194 TCTTGAAATTTGAGAGGAAATCCACAAATCAGA-AGATGTCCTAACTCAAAATGA-AACTATTAG
* * * * * * *** *
4727492 AAGTTATTTACTCTTATTTACCAAGATTAAACATGATTTGTGGGGTAATTTGAAGAAATTTGAAT
257 AAGGTATTTAATATTATTTATCAACATTAAACATGATTCGTAAAGTAATTTGAAGAAACTTGAAT
* * * *
4727557 TTCAACATCTTCATGAACCGAC-TTTCAAGATTGT-TGTGAAATTGATTTAAATATGTGAAATTT
322 TTCAACA---TCGTGAACCAACACTTC-AGATT-TATGTGAAATTGATTT-AA-ATGTGTAATTT
** ** * * ** ** * ** * * *
4727620 TTACTTAGTTTATATGTAATTTGTTTAGCATTGATGTTTGGAAGTGATTAGGA-GGGATGGAG-G
380 AGAAGTAGTATATACGTAATGGGTGGAGAATCAATGTTTGGAAGTGAATA-GATGGCAGGGAGAG
4727683 GTCGATTTTGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAG
444 GTCGATTTTGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAG
4727748 TGAATTTCGATTAGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGT
509 TGAATTTCGATTAGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGT
* *
4727813 CTACTTTACCTTTGTTGAAGCTTCGAGTCTTGAAGAGGACCGGGATAGCCAAAATTAGAACGAAC
574 CTACTTTACCTCTGTTGAAGCTTCGAGTCTTGAAGAGGACCGGGATAACCAAAATTAGAACGAAC
4727878 TTTTCTCGAAAGTAGACAAAC
639 TTTTCTCGAAAGTAGACAAAC
4727899 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
1 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
4727964 AGGTAATTATTAATTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
66 AGGTAATTATTAATTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
4728029 CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
131 CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
* * *
4728094 TTGAAATTTGAGAGGAAATCCACAAATCAGCAGATGTCCTAACTCTAAATGGAACTATTAGAAGG
196 TTGAAATTTGAGAGGAAATCCACAAATCAGAAGATGTCCTAACTCAAAATGAAACTATTAGAAGG
* * * *
4728159 TATTTACTCTTATTTATCAAGATTAAACATGATTTGTAAAGTAATTTGAAGAAACTTGAATTTCA
261 TATTTAATATTATTTATCAACATTAAACATGATTCGTAAAGTAATTTGAAGAAACTTGAATTTCA
* * * * * * * *
4728224 ACTTCTTGAACCAACATTTCGGATTTTTGTGAAATTGATTTAAATGTGTAATTTATAATTAGTTT
326 ACATCGTGAACCAACACTTCAGATTTATGTGAAATTGATTTAAATGTGTAATTTAGAAGTAGTAT
** ** * * * * * *
4728289 ATACGTAATTTGTTTAGTATTATTGTTTGGAAGTGATTAGATGGGATGGAGAGGTCGATTTTGTG
391 ATACGTAATGGGTGGAGAATCAATGTTTGGAAGTGAATAGATGGCAGGGAGAGGTCGATTTTGTG
*
4728354 AGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAGTGAATTTCGATG
456 AGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAGTGAATTTCGATT
4728419 AGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGTCTACTTTACCTC
521 AGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGTCTACTTTACCTC
*
4728484 TGTTGAAGCTTCGAGTCTTGAAGAGGACCGCGATAACCAAAATTAGAACGAACTTTTCTCGAAAG
586 TGTTGAAGCTTCGAGTCTTGAAGAGGACCGGGATAACCAAAATTAGAACGAACTTTTCTCGAAAG
*
4728549 TAGACAAAG
651 TAGACAAAC
*
4728558 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTAGAACGAATCAA
1 ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
*
4728623 AGGTAATTATTATTTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
66 AGGTAATTATTAATTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
4728688 CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
131 CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
* * * *
4728753 TTGAATTTTGAGAGGAAATCCACAAATCA-AAGGATGTTCTAACTCAAAATTAAACATGATTTGT
196 TTGAAATTTGAGAGGAAATCCACAAATCAGAA-GATGTCCTAACTCAAAATGAAAC-T-ATTAG-
* ** **
4728817 GAGGTAATTTGAATAAATTCGAATTT-T-AACA-TATTCATGATTCG-ACTATCTGAATTTTTG-
257 AAGGT-ATTT-AAT--ATT---ATTTATCAACATTAAACATGATTCGTA--AAGT-AA--TTTGA
* *** * * * *
4728877 TGAAA-TT-AATTT-AA-AT-GTGAAATTTATACTT-AG-TTTATGTGTAATTGGTTTATTAT-T
310 AGAAACTTGAATTTCAACATCGTG-AACCAACACTTCAGATTTATGTGAAATTGATTTA-AATGT
* * * *
4728934 G-ATGTTTGGAAGT-G-AT-TA-G-AA-GGGCTGGAGAAGTCAAT-TTTGGGAG-GAATCGACTT
373 GTA-ATTTAGAAGTAGTATATACGTAATGGG-TGGAGAA-TCAATGTTTGGAAGTGAATAGA--T
** *
4728990 TTCAGGGATAGGTCGATTTTGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACT
433 GGCAGGGAGAGGTCGATTTTGTGAGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACT
* * *
4729055 ATCTTTGTGAGTGAATTTCGATTAGAATTGTAAATTGTAATTTGTGTTTAATCTAGCTTTGGAAA
498 ATCTTTGTGAGTGAATTTCGATTAGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAA
* * * * *
4729120 AGTGGTAATGTGTACTTTACCTCCGTTGATGCTTCGAGTCTTGAAGAGGACCGGGATAACCAAAA
563 TGTAGTAATGTCTACTTTACCTCTGTTGAAGCTTCGAGTCTTGAAGAGGACCGGGATAACCAAAA
4729185 NNNNNNNNNN
Statistics
Matches: 1155, Mismatches: 100, Indels: 66
0.87 0.08 0.05
Matches are distributed among these distances:
657 8 0.01
658 77 0.07
659 640 0.55
660 31 0.03
661 9 0.01
662 6 0.01
663 322 0.28
664 13 0.01
665 8 0.01
666 14 0.01
667 10 0.01
668 5 0.00
669 8 0.01
670 4 0.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (659 bp):
ATATTTTGAAATTTCTCAAGATTCTTGAACCAATATTTTCAATCGAATGAATTACAACGAATCAA
AGGTAATTATTAATTCTAAACTTGTTTTTATGATGATTAGAAAATTTTTTACATGATTTGAGAGT
CAATTACATGACTATTTTCTCAATGTCATATTCTTCAAAAGCTTAAGGTGCTTTAATGGTGGATC
TTGAAATTTGAGAGGAAATCCACAAATCAGAAGATGTCCTAACTCAAAATGAAACTATTAGAAGG
TATTTAATATTATTTATCAACATTAAACATGATTCGTAAAGTAATTTGAAGAAACTTGAATTTCA
ACATCGTGAACCAACACTTCAGATTTATGTGAAATTGATTTAAATGTGTAATTTAGAAGTAGTAT
ATACGTAATGGGTGGAGAATCAATGTTTGGAAGTGAATAGATGGCAGGGAGAGGTCGATTTTGTG
AGGAATCGAGTTTTTGACTTGATGTTACAAATCTGGTAAACTATCTTTGTGAGTGAATTTCGATT
AGAATTGTTAATTATAATTTGTGTTTAATCTAGCTTTCGAAATGTAGTAATGTCTACTTTACCTC
TGTTGAAGCTTCGAGTCTTGAAGAGGACCGGGATAACCAAAATTAGAACGAACTTTTCTCGAAAG
TAGACAAAC
Found at i:4732334 original size:9 final size:9
Alignment explanation
Indices: 4732317--4732567 Score: 170
Period size: 9 Copynumber: 28.8 Consensus size: 9
4732307 TATGTATTAA
*
4732317 GTAAATTAT
1 GTAAGTTAT
4732326 GTAAGTTAT
1 GTAAGTTAT
*
4732335 GTACGTGTA-
1 GTAAGT-TAT
4732344 -TAAGTTAT
1 GTAAGTTAT
4732352 GTAAGTTAT
1 GTAAGTTAT
*
4732361 GTATGTTAT
1 GTAAGTTAT
4732370 GTAAG-T-T
1 GTAAGTTAT
4732377 GTAAGTTAT
1 GTAAGTTAT
*
4732386 G-CA-TTAT
1 GTAAGTTAT
**
4732393 GTAACCTAT
1 GTAAGTTAT
4732402 GTAAGTTAT
1 GTAAGTTAT
** *
4732411 CAAAGTAAT
1 GTAAGTTAT
*
4732420 GTATGTTAT
1 GTAAGTTAT
4732429 GTAAG-T-T
1 GTAAGTTAT
*
4732436 GTAGGTTAT
1 GTAAGTTAT
*
4732445 -TATGTATTAT
1 GTAAG--TTAT
4732455 GTAAGTTAT
1 GTAAGTTAT
*
4732464 GTAAGTTGT
1 GTAAGTTAT
*
4732473 GTAAGATAT
1 GTAAGTTAT
*
4732482 TTAAGTTAT
1 GTAAGTTAT
*
4732491 GTAAGTTTT
1 GTAAGTTAT
4732500 GT-A-TTAT
1 GTAAGTTAT
4732507 GTAAGTTAT
1 GTAAGTTAT
* *
4732516 GTATGCTAT
1 GTAAGTTAT
4732525 GT-A-TTAT
1 GTAAGTTAT
4732532 GTAAGTTGTTAT
1 GTAA---GTTAT
*
4732544 GTTA-TTAT
1 GTAAGTTAT
4732552 GTAAGTTAT
1 GTAAGTTAT
*
4732561 GCAAGTT
1 GTAAGTT
4732568 TAACCACAAG
Statistics
Matches: 186, Mismatches: 36, Indels: 40
0.71 0.14 0.15
Matches are distributed among these distances:
7 28 0.15
8 23 0.12
9 119 0.64
10 6 0.03
11 3 0.02
12 7 0.04
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:4732334 original size:25 final size:26
Alignment explanation
Indices: 4732306--4732410 Score: 78
Period size: 25 Copynumber: 4.2 Consensus size: 26
4732296 TTTACATAAT
4732306 TTATGTA-TTAAGTAAATTATGTAAG
1 TTATGTAGTTAAGTAAATTATGTAAG
*
4732331 TTATGTACGTGT-A-TAAGTTATGTAAG
1 TTATGTA-GT-TAAGTAAATTATGTAAG
* *
4732357 TTATGTATGTTATGT-AAGT-TGTAAG
1 TTATGTA-GTTAAGTAAATTATGTAAG
* * **
4732382 TTATGCA-TTATGTAACCTATGTAAG
1 TTATGTAGTTAAGTAAATTATGTAAG
4732407 TTAT
1 TTAT
4732411 CAAAGTAATG
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
23 6 0.09
24 2 0.03
25 30 0.46
26 23 0.35
27 3 0.05
28 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.19, T:0.45
Consensus pattern (26 bp):
TTATGTAGTTAAGTAAATTATGTAAG
Found at i:4732463 original size:16 final size:16
Alignment explanation
Indices: 4732444--4732561 Score: 86
Period size: 16 Copynumber: 7.3 Consensus size: 16
4732434 TTGTAGGTTA
4732444 TTATGTATTATGTAAG
1 TTATGTATTATGTAAG
*
4732460 TTATGTAAGTTGTGTAAG
1 TTATGT-A-TTATGTAAG
* *
4732478 ATATTTAAGTTATGTAAG
1 TTATGT-A-TTATGTAAG
*
4732496 TTTTGTATTATGTAAG
1 TTATGTATTATGTAAG
4732512 TTATGTATGCTATGT-A-
1 TTATGTAT--TATGTAAG
*
4732528 TTATGTA--A-GT-TG
1 TTATGTATTATGTAAG
4732540 TTATGTTATTATGTAAG
1 TTATG-TATTATGTAAG
4732557 TTATG
1 TTATG
4732562 CAAGTTTAAC
Statistics
Matches: 82, Mismatches: 10, Indels: 19
0.74 0.09 0.17
Matches are distributed among these distances:
11 2 0.02
12 6 0.07
13 2 0.02
15 1 0.01
16 31 0.38
17 9 0.11
18 31 0.38
ACGTcount: A:0.29, C:0.01, G:0.20, T:0.50
Consensus pattern (16 bp):
TTATGTATTATGTAAG
Found at i:4732490 original size:62 final size:58
Alignment explanation
Indices: 4732344--4732497 Score: 173
Period size: 62 Copynumber: 2.6 Consensus size: 58
4732334 TGTACGTGTA
4732344 TAAGTTATGTAAGTTATGTATGTTATGTAAGTTGTAAGTTATGCATTATGTAACCTATG
1 TAAGTTATGTAAG-TATGTATGTTATGTAAGTTGTAAGTTATGCATTATGTAACCTATG
** * * **
4732403 TAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAGGTTATTATGTATTATGTAAGTTATG
1 TAAGTTATGTAAGT-ATGTATGTTATGTAAGTTGTAAG---TTATGCATTATGTAACCTATG
* * *
4732465 TAAGTTGTGTAAGATATTTAAGTTATGTAAGTT
1 TAAGTTATGTAAG-TATGTATGTTATGTAAGTT
4732498 TTGTATTATG
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
58 1 0.01
59 33 0.42
62 44 0.56
63 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.45
Consensus pattern (58 bp):
TAAGTTATGTAAGTATGTATGTTATGTAAGTTGTAAGTTATGCATTATGTAACCTATG
Found at i:4732517 original size:25 final size:25
Alignment explanation
Indices: 4732321--4732538 Score: 149
Period size: 25 Copynumber: 8.5 Consensus size: 25
4732311 TATTAAGTAA
* *
4732321 ATTATGTAAGTTATGTACGTGTAT-A
1 ATTATGTAAGTTATGTAAGT-TATGT
*
4732346 AGTTATGTAAGTTATGTATGTTATGT
1 A-TTATGTAAGTTATGTAAGTTATGT
* *
4732372 AAGT-TGTAAGTTATG-CA-TTATGT
1 -ATTATGTAAGTTATGTAAGTTATGT
* ** *
4732395 AACCTATGTAAGTTATCAAAGTAATGT
1 -A-TTATGTAAGTTATGTAAGTTATGT
* *
4732422 ATGTTATGTAAGTTGTAGGTTA-TTATGT
1 A--TTATGTAAG-T-TATGTAAGTTATGT
*
4732450 ATTATGTAAGTTATGTAAGTTGTGT
1 ATTATGTAAGTTATGTAAGTTATGT
* * *
4732475 AAGATATTTAAGTTATGTAAGTTTTGT
1 -A-TTATGTAAGTTATGTAAGTTATGT
* *
4732502 ATTATGTAAGTTATGTATGCTATGT
1 ATTATGTAAGTTATGTAAGTTATGT
4732527 ATTATGTAAGTT
1 ATTATGTAAGTT
4732539 GTTATGTTAT
Statistics
Matches: 153, Mismatches: 27, Indels: 26
0.74 0.13 0.13
Matches are distributed among these distances:
23 8 0.05
24 6 0.04
25 62 0.41
26 32 0.21
27 35 0.23
28 7 0.05
29 3 0.02
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.46
Consensus pattern (25 bp):
ATTATGTAAGTTATGTAAGTTATGT
Found at i:4732680 original size:17 final size:17
Alignment explanation
Indices: 4732658--4732694 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
4732648 TTTTTATAAG
4732658 TTATGTATTATGTAAAT
1 TTATGTATTATGTAAAT
*
4732675 TTATGTATTATGTAAGT
1 TTATGTATTATGTAAAT
4732692 TTA
1 TTA
4732695 CATATAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (17 bp):
TTATGTATTATGTAAAT
Found at i:4735670 original size:431 final size:431
Alignment explanation
Indices: 4734867--4735851 Score: 1805
Period size: 431 Copynumber: 2.3 Consensus size: 431
4734857 AAACGGTGAC
*
4734867 GTTTTAAATAAATTATTCTAAAATTTTTCTAAGTTAAAAATCGGTTACGGAAACGACGTCGTTTA
1 GTTTTAAATAAATAATTCTAAAATTTTTCTAAGTTAAAAATCGGTTACGGAAACGACGTCGTTTA
4734932 GCCATTATATTAACATTGTTTTGCGGCGTTTTAGGTACAAACGCCGCAATTGCTTCCACATTTCC
66 GCCATTATATTAACATTGTTTTGCGGCGTTTTAGGTACAAACGCCGCAATTGCTTCCACATTTCC
4734997 GACGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTCGTGGT
131 GACGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTCGTGGT
4735062 CTGGAATTACATTATTTCTGGCGTTTTAAGCACAAATGCCACTAAAATTTGTCTAAGTAAAATAT
196 CTGGAATTACATTATTTCTGGCGTTTTAAGCACAAATGCCACTAAAATTTGTCTAAGTAAAATAT
4735127 ACTGTACAGAAACGACACCGTTTACCCATTTTTTTAAAACCCTTTTGCGGCGTTTGATATAAAAT
261 ACTGTACAGAAACGACACCGTTTACCCATTTTTTTAAAACCCTTTTGCGGCGTTTGATATAAAAT
4735192 CGCCACTAAAAGTTCAAGTTTTAAACAGAAATGGCGCCGTTTTGCTAGTCTCAATTTGTATTATT
326 CGCCACTAAAAGTTCAAGTTTTAAACAGAAATGGCGCCGTTTTGCTAGTCTCAATTTGTATTATT
4735257 AGTTGCGTTTTGTGTAAAAACGCCACGAATACTTAATTGAT
391 AGTTGCGTTTTGTGTAAAAACGCCACGAATACTTAATTGAT
4735298 GTTTTAAATAAATAATTCTAAAATTTTTCTAAGTTAAAAATCGGTTACGGAAACGACGTCGTTTA
1 GTTTTAAATAAATAATTCTAAAATTTTTCTAAGTTAAAAATCGGTTACGGAAACGACGTCGTTTA
4735363 GCCATTATATTAACATTGTTTTGCGGCGTTTTAGGTACAAACGCCGCAATTGCTTCCACATTTCC
66 GCCATTATATTAACATTGTTTTGCGGCGTTTTAGGTACAAACGCCGCAATTGCTTCCACATTTCC
4735428 GACGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTCGTGGT
131 GACGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTCGTGGT
4735493 CTGGAATTACATTATTTCTGGCGTTTTAAGCACAAATGCCACTAAAATTTGTCTAAGTAAAATAT
196 CTGGAATTACATTATTTCTGGCGTTTTAAGCACAAATGCCACTAAAATTTGTCTAAGTAAAATAT
4735558 ACTGTACAGAAACGACACCGTTTACCCATTTTTTTAAAACCCTTTTGCGGCGTTTGATATAAAAT
261 ACTGTACAGAAACGACACCGTTTACCCATTTTTTTAAAACCCTTTTGCGGCGTTTGATATAAAAT
4735623 CGCCACTAAAAGTTCAAGTTTTAAACAGAAATGGCGCCGTTTTGCTAGTCTCAATTTGTATTATT
326 CGCCACTAAAAGTTCAAGTTTTAAACAGAAATGGCGCCGTTTTGCTAGTCTCAATTTGTATTATT
4735688 AGTTGCGTTTTGTGTAAAAACGCCACGAATACTTAATTGAT
391 AGTTGCGTTTTGTGTAAAAACGCCACGAATACTTAATTGAT
* *
4735729 GTTTTAAATAAATAATTCTAAAATTTTTCTAAGTTAAAAATC-GTGTACAGAAACGGC-TCCGTT
1 GTTTTAAATAAATAATTCTAAAATTTTTCTAAGTTAAAAATCGGT-TACGGAAACGACGT-CGTT
* * * *** * * * *
4735792 TAGACATTATTTTAATACCCTTTTGCGGCG-TTTACTGAAAAAACGCCGCTATTGCTTCCA
64 TAGCCATTATATTAACATTGTTTTGCGGCGTTTTA-GGTACAAACGCCGCAATTGCTTCCA
4735852 AAATTTCCTG
Statistics
Matches: 538, Mismatches: 13, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
430 7 0.01
431 531 0.99
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (431 bp):
GTTTTAAATAAATAATTCTAAAATTTTTCTAAGTTAAAAATCGGTTACGGAAACGACGTCGTTTA
GCCATTATATTAACATTGTTTTGCGGCGTTTTAGGTACAAACGCCGCAATTGCTTCCACATTTCC
GACGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTCGTGGT
CTGGAATTACATTATTTCTGGCGTTTTAAGCACAAATGCCACTAAAATTTGTCTAAGTAAAATAT
ACTGTACAGAAACGACACCGTTTACCCATTTTTTTAAAACCCTTTTGCGGCGTTTGATATAAAAT
CGCCACTAAAAGTTCAAGTTTTAAACAGAAATGGCGCCGTTTTGCTAGTCTCAATTTGTATTATT
AGTTGCGTTTTGTGTAAAAACGCCACGAATACTTAATTGAT
Found at i:4738402 original size:30 final size:31
Alignment explanation
Indices: 4738354--4738413 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
4738344 AAACATTTTA
* * *
4738354 TTTTCCCCCACAATTTTTATTTCC-TCCCAC
1 TTTTCCCCCAAAACTTTTATTCCCTTCCCAC
*
4738384 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTATTCCCTTCCCA
4738414 TCCCACCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.18, C:0.38, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTATTCCCTTCCCAC
Found at i:4745354 original size:12 final size:12
Alignment explanation
Indices: 4745337--4745369 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
4745327 AATAGGATCA
4745337 ATATATGTATTT
1 ATATATGTATTT
*
4745349 ATATATATATTT
1 ATATATGTATTT
4745361 ATATATGTA
1 ATATATGTA
4745370 GTTGAGAGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (12 bp):
ATATATGTATTT
Found at i:4746752 original size:8 final size:8
Alignment explanation
Indices: 4746739--4746763 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
4746729 CTAAAGTGAT
4746739 TTTTCATA
1 TTTTCATA
4746747 TTTTCATA
1 TTTTCATA
4746755 TTTTCATA
1 TTTTCATA
4746763 T
1 T
4746764 CGCTTTGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTTCATA
Found at i:4746885 original size:2 final size:2
Alignment explanation
Indices: 4746878--4746904 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4746868 TGTAAAATTT
4746878 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
4746905 TAATATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4746910 original size:10 final size:11
Alignment explanation
Indices: 4746878--4746923 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 11
4746868 TGTAAAATTT
4746878 TATATA-TATA
1 TATATATTATA
4746888 TATATA-TATA
1 TATATATTATA
4746898 TATATATTA-A
1 TATATATTATA
*
4746908 TATTTATTATA
1 TATATATTATA
*
4746919 AATAT
1 TATAT
4746924 TTTTATCGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
10 25 0.81
11 6 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TATATATTATA
Found at i:4769286 original size:29 final size:30
Alignment explanation
Indices: 4769227--4769284 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
4769217 TCCGAGCCTT
*
4769227 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
4769257 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
4769285 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:4769515 original size:13 final size:13
Alignment explanation
Indices: 4769497--4769527 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
4769487 TTCCAGCAAC
4769497 TATGAATTTATTT
1 TATGAATTTATTT
4769510 TATGAATTTATTT
1 TATGAATTTATTT
*
4769523 GATGA
1 TATGA
4769528 TGATCTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (13 bp):
TATGAATTTATTT
Found at i:4789085 original size:24 final size:22
Alignment explanation
Indices: 4789038--4789087 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
4789028 TCATCCTTAG
*
4789038 AAAATTAAGAAAAGAAAATGAT
1 AAAATTAAGAAAAGAAAATAAT
4789060 AAAATT-AGAAAGATGATAAATAAT
1 AAAATTAAGAAA-A-GA-AAATAAT
4789084 AAAA
1 AAAA
4789088 CCAAACAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.21
22 7 0.29
23 2 0.08
24 10 0.42
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.20
Consensus pattern (22 bp):
AAAATTAAGAAAAGAAAATAAT
Found at i:4790082 original size:26 final size:26
Alignment explanation
Indices: 4790053--4790118 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 26
4790043 TCGTTATATA
4790053 GCTCTTCATGAGCTTCCCGATTAAAG
1 GCTCTTCATGAGCTTCCCGATTAAAG
* * * *
4790079 GCTCTTTATGAGCTTTCTGATTAATG
1 GCTCTTCATGAGCTTCCCGATTAAAG
*
4790105 GCTCTCCA-GAGCTT
1 GCTCTTCATGAGCTT
4790119 TCCAATATGG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 6 0.18
26 28 0.82
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
GCTCTTCATGAGCTTCCCGATTAAAG
Found at i:4798956 original size:17 final size:17
Alignment explanation
Indices: 4798934--4798978 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
4798924 AAATTTTAGA
*
4798934 CCCACACGCCCTTGTGG
1 CCCACACGCCCGTGTGG
4798951 CCCACACGCCCGTGTGG
1 CCCACACGCCCGTGTGG
*
4798968 CCCATACGCCC
1 CCCACACGCCC
4798979 AATCTTGGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.13, C:0.51, G:0.22, T:0.13
Consensus pattern (17 bp):
CCCACACGCCCGTGTGG
Found at i:4800253 original size:21 final size:21
Alignment explanation
Indices: 4800201--4800255 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
4800191 CCTCGAAAGC
**
4800201 TGAACAGAAGGTCATAAGAGT
1 TGAACAGAAACTCATAAGAGT
* * *
4800222 TTAATACAAACTCATAAGAGT
1 TGAACAGAAACTCATAAGAGT
4800243 TGAACAGAAACTC
1 TGAACAGAAACTC
4800256 GAAAGAGCTA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (21 bp):
TGAACAGAAACTCATAAGAGT
Found at i:4802229 original size:30 final size:30
Alignment explanation
Indices: 4802187--4802247 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 30
4802177 GGGGGTGGGA
4802187 TGGGAGGGGAGTAAAAGTTTTGGGGGGAAAG
1 TGGGAGGGGAGTAAAAGTTTT-GGGGGAAAG
4802218 TGGGA-GGGAGTAAAAGTTTTGGGGGAAAG
1 TGGGAGGGGAGTAAAAGTTTTGGGGGAAAG
4802247 T
1 T
4802248 AAAGAGGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.33
30 15 0.50
31 5 0.17
ACGTcount: A:0.30, C:0.00, G:0.49, T:0.21
Consensus pattern (30 bp):
TGGGAGGGGAGTAAAAGTTTTGGGGGAAAG
Found at i:4803866 original size:27 final size:27
Alignment explanation
Indices: 4803828--4803887 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
4803818 GCAAAATTTC
*
4803828 AAAACAGTTGGTGGGTACTCCTTACTT
1 AAAACAGTTGGTGGGTACTCCTTACCT
4803855 AAAACAGTTGGTGGGTACTCCTTACCT
1 AAAACAGTTGGTGGGTACTCCTTACCT
4803882 AAAACA
1 AAAACA
4803888 TATTTTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (27 bp):
AAAACAGTTGGTGGGTACTCCTTACCT
Found at i:4813222 original size:19 final size:20
Alignment explanation
Indices: 4813183--4813223 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
4813173 CTTAAGATAG
*
4813183 TAAAATATATTTGGAATAAT
1 TAAAATATATTTAGAATAAT
*
4813203 TAAAATATTTTTAG-ATAAT
1 TAAAATATATTTAGAATAAT
4813222 TA
1 TA
4813224 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
TAAAATATATTTAGAATAAT
Found at i:4820816 original size:13 final size:13
Alignment explanation
Indices: 4820798--4820849 Score: 56
Period size: 12 Copynumber: 4.2 Consensus size: 13
4820788 GAATGAAAAT
4820798 ATTTATATATGAA
1 ATTTATATATGAA
4820811 A-TT-TATATGAA
1 ATTTATATATGAA
*
4820822 ATTTTTATAT-AA
1 ATTTATATATGAA
*
4820834 AATTATATATCGAA
1 ATTTATATAT-GAA
4820848 AT
1 AT
4820850 ATTTTTTGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
11 9 0.28
12 14 0.44
13 6 0.19
14 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (13 bp):
ATTTATATATGAA
Found at i:4820823 original size:26 final size:27
Alignment explanation
Indices: 4820794--4820854 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 27
4820784 ATATGAATGA
*
4820794 AAATATTTATATATGAAATT-TATAT-G
1 AAATATTT-TATATAAAATTATATATCG
4820820 AAAT-TTTTATATAAAATTATATATCG
1 AAATATTTTATATAAAATTATATATCG
4820846 AAATATTTT
1 AAATATTTT
4820855 TTGTTTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 10 0.32
25 8 0.26
26 9 0.29
27 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.48
Consensus pattern (27 bp):
AAATATTTTATATAAAATTATATATCG
Found at i:4821645 original size:21 final size:21
Alignment explanation
Indices: 4821621--4821665 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4821611 CTCGTGTAAC
*
4821621 AATTAACATATACTTCATAAA
1 AATTAACAAATACTTCATAAA
* *
4821642 AATTCAGAAATACTTCATAAA
1 AATTAACAAATACTTCATAAA
4821663 AAT
1 AAT
4821666 ATATATCCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.31
Consensus pattern (21 bp):
AATTAACAAATACTTCATAAA
Found at i:4826847 original size:12 final size:12
Alignment explanation
Indices: 4826830--4826859 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
4826820 GGACACACGG
4826830 CCGTGTCCTAAC
1 CCGTGTCCTAAC
*
4826842 CCGTGTCCTCAC
1 CCGTGTCCTAAC
4826854 CCGTGT
1 CCGTGT
4826860 AACTCACTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.43, G:0.20, T:0.27
Consensus pattern (12 bp):
CCGTGTCCTAAC
Found at i:4832894 original size:20 final size:21
Alignment explanation
Indices: 4832861--4832901 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
4832851 TTCTATTATT
4832861 TTAATAAGATTTAATATTAAA
1 TTAATAAGATTTAATATTAAA
4832882 TTAATAA-ATTTAATATTAAA
1 TTAATAAGATTTAATATTAAA
4832902 GTGATTAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
TTAATAAGATTTAATATTAAA
Found at i:4837364 original size:19 final size:19
Alignment explanation
Indices: 4837322--4837365 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4837312 AATCCATATG
** *
4837322 TATTTTATGCTCTTTTTTA
1 TATTTTATGAACTTTTATA
*
4837341 AATTTTATGAACTTTTATA
1 TATTTTATGAACTTTTATA
4837360 TATTTT
1 TATTTT
4837366 TTAAAATTTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.64
Consensus pattern (19 bp):
TATTTTATGAACTTTTATA
Found at i:4843833 original size:29 final size:30
Alignment explanation
Indices: 4843800--4843858 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
4843790 ACTTAACAAG
*
4843800 CAAATACCTCTAAAATAGTAAC-AAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
4843829 CAAATATCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
4843859 TAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:4846792 original size:15 final size:15
Alignment explanation
Indices: 4846774--4846805 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4846764 GAGAGAGGAA
4846774 AATAGAAAAAACAAG
1 AATAGAAAAAACAAG
*
4846789 AATAGAAAAAAGAAG
1 AATAGAAAAAACAAG
4846804 AA
1 AA
4846806 GATGAAAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.03, G:0.16, T:0.06
Consensus pattern (15 bp):
AATAGAAAAAACAAG
Found at i:4850563 original size:26 final size:29
Alignment explanation
Indices: 4850510--4850563 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 29
4850500 TTCTTTCTCT
*
4850510 TTTCCTTTTCTTTTCATTTTTAGTTTAGG
1 TTTCCTTTTCTTTTCATTTTTAGGTTAGG
4850539 TTTCC-TTTC-TTTC-TTTTTAGGTTAG
1 TTTCCTTTTCTTTTCATTTTTAGGTTAG
4850564 ATCTTAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 11 0.46
27 4 0.17
28 4 0.17
29 5 0.21
ACGTcount: A:0.09, C:0.15, G:0.11, T:0.65
Consensus pattern (29 bp):
TTTCCTTTTCTTTTCATTTTTAGGTTAGG
Found at i:4851366 original size:25 final size:25
Alignment explanation
Indices: 4851309--4851380 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
4851299 ACACAATTAC
* *
4851309 CCACTTGACAATCCTTTGGGTTTGA
1 CCACTTGGCAATCCTTTGGGTTCGA
4851334 CCACTTGGCAATCCTTTGGGTTCGA
1 CCACTTGGCAATCCTTTGGGTTCGA
* * *
4851359 CCATTTGG-AATACTTTGTGTTC
1 CCACTTGGCAATCCTTTGGGTTC
4851381 CATCAAAACT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 12 0.29
25 30 0.71
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (25 bp):
CCACTTGGCAATCCTTTGGGTTCGA
Found at i:4855116 original size:15 final size:16
Alignment explanation
Indices: 4855085--4855116 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4855075 AAGAGAGGAA
4855085 AATAGAAAAAAACAAG
1 AATAGAAAAAAACAAG
4855101 AATAGAAAAAAA-AAG
1 AATAGAAAAAAACAAG
4855116 A
1 A
4855117 TGAAGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.78, C:0.03, G:0.12, T:0.06
Consensus pattern (16 bp):
AATAGAAAAAAACAAG
Found at i:4858176 original size:6 final size:6
Alignment explanation
Indices: 4858165--4858196 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
4858155 TTTTGTTTGC
4858165 AAAATT AAAATT AAAATT AAAATT AAAATT AA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AA
4858197 CAGTGTACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:4858322 original size:25 final size:25
Alignment explanation
Indices: 4858275--4858322 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
4858265 TAGTCTTTTC
*
4858275 TTTTATTAATAATAATATAAAATAT
1 TTTTATTAATAATAAAATAAAATAT
*
4858300 TTTTATTAA-AATTAAAATTAAAT
1 TTTTATTAATAA-TAAAATAAAAT
4858323 TTTAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TTTTATTAATAATAAAATAAAATAT
Found at i:4860492 original size:21 final size:22
Alignment explanation
Indices: 4860467--4860507 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
4860457 TCAAAATCTT
* *
4860467 GAATTT-AAATATTTTAATTGC
1 GAATTTCAAAAATTTAAATTGC
4860488 GAATTTCAAAAATTTAAATT
1 GAATTTCAAAAATTTAAATT
4860508 CAAATTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (22 bp):
GAATTTCAAAAATTTAAATTGC
Found at i:4867731 original size:22 final size:23
Alignment explanation
Indices: 4867678--4867733 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
4867668 CCCGTTTTTA
* * *
4867678 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
4867701 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
4867723 ATTAAAATTAA
1 ATTAAAATTAA
4867734 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:4867746 original size:16 final size:16
Alignment explanation
Indices: 4867709--4867748 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
4867699 TTAATAAAAT
* *
4867709 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
4867725 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
4867741 TAAAATTA
1 TAAAATTA
4867749 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:4868644 original size:33 final size:31
Alignment explanation
Indices: 4868587--4868660 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 31
4868577 CAAACTAATC
* *
4868587 TTCTCTCAAATTTCCTCAATTTCC-TCTAAAT
1 TTCTCTC-AATTTCCTCAAATTCCTTCCAAAT
4868618 TTCCTCTCAATTTGCTCTCAAATTCCTTCCAAAT
1 TT-CTCTCAATTT-C-CTCAAATTCCTTCCAAAT
4868652 TTCTCTCAA
1 TTCTCTCAA
4868661 ATCCATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
31 7 0.19
32 6 0.16
33 16 0.43
34 8 0.22
ACGTcount: A:0.24, C:0.31, G:0.01, T:0.43
Consensus pattern (31 bp):
TTCTCTCAATTTCCTCAAATTCCTTCCAAAT
Found at i:4868661 original size:11 final size:11
Alignment explanation
Indices: 4868587--4868662 Score: 72
Period size: 11 Copynumber: 7.0 Consensus size: 11
4868577 CAAACTAATC
4868587 TTCTCTCAAAT
1 TTCTCTCAAAT
4868598 TTC-CTC-AAT
1 TTCTCTCAAAT
4868607 TTC-CTCTAAAT
1 TTCTCTC-AAAT
4868618 TTCCTCTC-AAT
1 TT-CTCTCAAAT
4868629 TTGCTCTCAAAT
1 TT-CTCTCAAAT
*
4868641 TCCT-TCCAAAT
1 TTCTCT-CAAAT
4868652 TTCTCTCAAAT
1 TTCTCTCAAAT
4868663 CCATATTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
9 9 0.16
10 4 0.07
11 33 0.60
12 6 0.11
13 3 0.05
ACGTcount: A:0.25, C:0.30, G:0.01, T:0.43
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:4869909 original size:7 final size:7
Alignment explanation
Indices: 4869897--4869922 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
4869887 TAGTCGATTG
4869897 GTATTTA
1 GTATTTA
4869904 GTATTTA
1 GTATTTA
4869911 GTATTTA
1 GTATTTA
4869918 GTATT
1 GTATT
4869923 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:4872052 original size:25 final size:25
Alignment explanation
Indices: 4871996--4872053 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
4871986 NNNNNNNNNN
*
4871996 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
*
4872021 TTATTTGATGTAATAAAATATAAAT
1 TTATTTGATGTAATAAAATAGAAAT
*
4872046 TTTTTTGA
1 TTATTTGA
4872054 GTTATTTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAAT
Found at i:4875035 original size:635 final size:634
Alignment explanation
Indices: 4873819--4875087 Score: 1722
Period size: 635 Copynumber: 2.0 Consensus size: 634
4873809 TTTGGCTACG
* * * * * * *
4873819 AATATTGGTAATTAAGACTGGCACTGAAGTCCTAGGATCTGCCTTCATCGTTGGTAGTATCAAGC
1 AATATTGGTAATTAACACCGACACTGAAGTCCTAGGATCTGCCTTAACCGTGGGCAGTATCAAGC
* * * *
4873884 TAGCTAACATAGCTGAATCCATCTTGGGATGATCTTGTGAAATACCTGTCAACGAAGTACGTTAA
66 TAGCTAACATAGCTGAATCCATCTTGGGATGATCTTGTGAAACACCTATAAACGAAGTACATTAA
* * *
4873949 ATAATGCAACATTACATAATAATAGCAAATGTAAAAACCCTAAATATTGTACCTGCAGCACATGT
131 ATAATGCAACATTACATAATAAAAGCAAATGTAAAAACCCTAAATACTGTACCTGCAACACATGT
* * *
4874014 ATGTGGACCTTCATACTTTTTTATCTCCCACAACCTTGTCATTTTCCTCAACGAGGCGTAGATAT
196 ATGTGGACATTCATACTTTTTAATCTCCCACAACCCTGTCATTTTCCTCAACGAGGCGTAGATAT
** *
4874079 TCCATGAACATGTACCGTCTTGCACTGCACACTTTGCCTCAAACTTATCAACTTTGGATTTAACC
261 TCCATGAACATGTACCGTCTTGCAAAGCACACTTCGCCTCAAACTTATCAACTTTGGATTTAACC
* ** * **
4874144 ACGTTGTAGTTAATGCCGTTATTGATGTTATGTTGTTTCAGTGCACCAATAAAACTATCCTTATT
326 ACGTAGTAGTTAACACCGTTATTGATGCTATGTTGTTTCAAAGCACCAATAAAACTATCCTTATT
* * * *
4874209 GGAAAACTCCTTACCAACTTCAAATTCACCTGAATCCAATAACAAACTTGTATGATCACGCATTC
391 GGAAAACTCATTACCAACTTCAAATTCACCTGAATCCAACAACAAACTTGTACGATCACGCATAC
* * *
4874274 TGTGTGGTAGATCTGGAAACTCTAATGCATCATCTGTAGATAGATCAACATTATGCATGTGGGCT
456 TGTGTGGTAGATCTGGAAACTCTAACGCATCATCTGCAGACAGATCAACATTATGCATGTGGGCT
4874339 GGAGGCGAGTATGCCCTAAATCGTGAATCTTCTTCTTCATCTGAACCCCCTTAAACATCTTCAAG
521 GGAGGCGAGTATGCCCTAAATCGTGAATCTTCTTCTTCATCTGAACCCCCTTAAACATCTTCAAG
* * *
4874404 TTCGGTTGGAATAGGCTCTGGTTTAGAAAATAATACAACTTCTGCACCA
586 TTCGGTTGGAATAGGCTCCGGTTCAGAAAATAAGACAACTTCTGCACCA
* * *
4874453 AATATTGGTAATTAACACCGACATTGAAGTCCTGGGATCTGCTTTAACCGTGGGCAGTATCAAGC
1 AATATTGGTAATTAACACCGACACTGAAGTCCTAGGATCTGCCTTAACCGTGGGCAGTATCAAGC
* *
4874518 TAGCTAACATAGGTTAATCCATCTTGGGATGATCTTGTGAAACACCTATAAACCG-AGTACATTA
66 TAGCTAACATAGCTGAATCCATCTTGGGATGATCTTGTGAAACACCTATAAA-CGAAGTACATTA
* * * * ** * *
4874582 AATAATGCAACATTGCATAATAAAAGTATTAT-TCAGAAACTGTCAATACTGTACCTGCAACATA
130 AATAATGCAACATTACATAATAAAAGCA-AATGT-AAAAACCCTAAATACTGTACCTGCAACACA
** * * *
4874646 TGTATGTGGACATTTGTACTTTTTAATCTTCCACAACCCTGTCCTTTTCCTTAACGAGGCGTAGA
193 TGTATGTGGACATTCATACTTTTTAATCTCCCACAACCCTGTCATTTTCCTCAACGAGGCGTAGA
* * * *
4874711 TTTTCCATGAACATGTGCCGTCTTGGAAAGCACACTTCGTCTCAAACTTATCAGA-TTTGGATTT
258 TATTCCATGAACATGTACCGTCTTGCAAAGCACACTTCGCCTCAAACTTATCA-ACTTTGGATTT
* * *
4874775 AACGACGTAGTAGTTAACACCGTTTTTGATGCTATGTTGTTTTAAAGCACCAATAAAACTATCCT
322 AACCACGTAGTAGTTAACACCGTTATTGATGCTATGTTGTTTCAAAGCACCAATAAAACTATCCT
* * * ** *
4874840 TGTTGGTAAACTGATTACCAACTTCAAATTCACC-GAAAT-CAACCCCCGAACTTGTACGATCAC
387 TATTGGAAAACTCATTACCAACTTCAAATTCACCTG-AATCCAA-CAACAAACTTGTACGATCAC
*
4874903 GCA-ACTGGTGTGGTAGATCTGGAAACTCTAACGCATCATCTGCAGACAGATCGACATTATGCAT
450 GCATACT-GTGTGGTAGATCTGGAAACTCTAACGCATCATCTGCAGACAGATCAACATTATGCAT
* * * * * * * *
4874967 GTGGGCTGGAGGTGAGTATGCTCTGAATCGTGAATTTTCTTCTTCATCTGAACTCCTTTCAGCAT
514 GTGGGCTGGAGGCGAGTATGCCCTAAATCGTGAATCTTCTTCTTCATCTGAACCCCCTTAAACAT
* * *
4875032 CTTCAGGTTCTGTTGGAATAGGCTCCGGTTCAGAAAATAAGCCAACTTCTGCACCA
579 CTTCAAGTTCGGTTGGAATAGGCTCCGGTTCAGAAAATAAGACAACTTCTGCACCA
4875088 TCCGGCCTGG
Statistics
Matches: 549, Mismatches: 79, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
634 142 0.26
635 406 0.74
636 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (634 bp):
AATATTGGTAATTAACACCGACACTGAAGTCCTAGGATCTGCCTTAACCGTGGGCAGTATCAAGC
TAGCTAACATAGCTGAATCCATCTTGGGATGATCTTGTGAAACACCTATAAACGAAGTACATTAA
ATAATGCAACATTACATAATAAAAGCAAATGTAAAAACCCTAAATACTGTACCTGCAACACATGT
ATGTGGACATTCATACTTTTTAATCTCCCACAACCCTGTCATTTTCCTCAACGAGGCGTAGATAT
TCCATGAACATGTACCGTCTTGCAAAGCACACTTCGCCTCAAACTTATCAACTTTGGATTTAACC
ACGTAGTAGTTAACACCGTTATTGATGCTATGTTGTTTCAAAGCACCAATAAAACTATCCTTATT
GGAAAACTCATTACCAACTTCAAATTCACCTGAATCCAACAACAAACTTGTACGATCACGCATAC
TGTGTGGTAGATCTGGAAACTCTAACGCATCATCTGCAGACAGATCAACATTATGCATGTGGGCT
GGAGGCGAGTATGCCCTAAATCGTGAATCTTCTTCTTCATCTGAACCCCCTTAAACATCTTCAAG
TTCGGTTGGAATAGGCTCCGGTTCAGAAAATAAGACAACTTCTGCACCA
Found at i:4876106 original size:125 final size:126
Alignment explanation
Indices: 4875830--4876109 Score: 404
Period size: 125 Copynumber: 2.2 Consensus size: 126
4875820 NNNNNNNNNN
* *
4875830 TCAACTCGAAATTATTTCTTCCAGGACCAACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTC
1 TCAACTCGAAATTATTTCTTCCAGGACCTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTA
* ** * * *
4875895 AGAAATTCTTCTCAAATAGCATCCTGCTTGAAGCGTTTTTTATACTATTTGTTCAGAAGCG
66 ACAAATTCTTCTCAAATAGCATCCTGCTAAAAGCGTATTTTATACTATTTGCTCAGAAACG
* * ** *
4875956 TCAACTCAAAATAATTT-TTTTAGGACCTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTA
1 TCAACTCGAAATTATTTCTTCCAGGACCTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTA
*
4876020 ACAAATTCTTCTCATAA-AGCATCCTGGTAAAAGCG-ATTTTATACTATTTGCTCAGAAACG
66 ACAAATTCTTCTCA-AATAGCATCCTGCTAAAAGCGTATTTTATACTATTTGCTCAGAAACG
4876080 TCAACTCGAAATTATTTCTTCCAGGACCTA
1 TCAACTCGAAATTATTTCTTCCAGGACCTA
4876110 AAAAGCCTGA
Statistics
Matches: 134, Mismatches: 18, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
124 37 0.28
125 80 0.60
126 17 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (126 bp):
TCAACTCGAAATTATTTCTTCCAGGACCTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTA
ACAAATTCTTCTCAAATAGCATCCTGCTAAAAGCGTATTTTATACTATTTGCTCAGAAACG
Found at i:4879130 original size:41 final size:43
Alignment explanation
Indices: 4878959--4879160 Score: 281
Period size: 42 Copynumber: 4.8 Consensus size: 43
4878949 AAACAAAAAC
* *
4878959 GCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTCCTAAGT
1 GCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTACTAAAT
* **
4879001 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT-CTAAGC
1 GCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTACTAAAT
4879043 GCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTAC-AAAT
1 GCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTTACTAAAT
4879086 GCCGCTAAAGAACATGTT-TTGTAGCGGC-TTTTTTTAC-AAAT
1 GCCGCTAAAGAACATGTTCTT-TAGCGGCGTTTTTTTACTAAAT
**
4879127 GCCGCTAAAGAACATGTTCTTTAGTAGCGTTTTT
1 GCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
4879161 ATACAAAAAA
Statistics
Matches: 147, Mismatches: 7, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
41 36 0.24
42 70 0.48
43 40 0.27
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (43 bp):
GCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTACTAAAT
Found at i:4879528 original size:21 final size:21
Alignment explanation
Indices: 4879466--4879536 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
4879456 TTTTGGTCTG
* *
4879466 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCCGC
*
4879487 CTCAGCTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCCGC
* *
4879508 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCCGC
4879529 CTCTGCTT
1 CTCTGCTT
4879537 TAAGTTGTAG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.03, C:0.48, G:0.18, T:0.31
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCCGC
Found at i:4889289 original size:80 final size:83
Alignment explanation
Indices: 4889115--4889368 Score: 367
Period size: 80 Copynumber: 3.1 Consensus size: 83
4889105 AAATCTATTA
* * * * * *
4889115 AATTTCATTTCATGAAACGGCTACATTTTATTCAATTTTTCAAATATTATTTGCGACGTTTCTTA
1 AATTTCATTTCACGAAACGGCTCCGTTTTATTCAAATTTTCAAATATTATTTGCGGCGTTTTTTA
4889180 CAAAAACGCCACTAAATT
66 CAAAAACGCCACTAAATT
4889198 AATTTCATTTCACGAAACGGCTCCGTTTTATTCAAATTTTC-AA-A-TATTTGCGGCGTTTTTTA
1 AATTTCATTTCACGAAACGGCTCCGTTTTATTCAAATTTTCAAATATTATTTGCGGCGTTTTTTA
* *
4889260 CAAAAACTCTACTAAATT
66 CAAAAACGCCACTAAATT
*
4889278 AATTTCATTTCACGAAACGGCTCCGTTTTATTC-AATCTTTCAAATATTATTTGCAGCGTTTTTT
1 AATTTCATTTCACGAAACGGCTCCGTTTTATTCAAAT-TTTCAAATATTATTTGCGGCGTTTTTT
*
4889342 AAAAAAACGCCACTAAATT
65 ACAAAAACGCCACTAAATT
4889361 -ATTT-ATTT
1 AATTTCATTT
4889369 TTATTTATAA
Statistics
Matches: 155, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
79 3 0.02
80 69 0.45
81 7 0.05
82 7 0.05
83 69 0.45
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (83 bp):
AATTTCATTTCACGAAACGGCTCCGTTTTATTCAAATTTTCAAATATTATTTGCGGCGTTTTTTA
CAAAAACGCCACTAAATT
Found at i:4891321 original size:114 final size:115
Alignment explanation
Indices: 4891193--4891478 Score: 302
Period size: 113 Copynumber: 2.5 Consensus size: 115
4891183 CAAAAGATAA
* *
4891193 GGAGACGACGTCGTTGGGCTTAGGTTTTTAGCGGCGCTTTTACAACAAACGCCGCTAAAAG-CCT
1 GGAGACGACGTCGTTGCGCTTAGTTTTTTAGCGGCGCTTTTACAACAAACGCCGCTAAAAGACCT
* *
4891257 GATAATTAGCGGCGCTTCCTATA-AAGCGCCACTAAATCCCTGAA-AGCT-G
66 AAGAATTAGCGGCGCTT--TATAGAAGCGCCACTAAATCCCTGAATAGCTCG
* * * *
4891306 GCGAGACGATGTCGTTGCGC-TAGATTTTTTTA-CGGCGC-TTTCCCAGAAACGCCGCT-AAAGA
1 G-GAGACGACGTCGTTGCGCTTAG--TTTTTTAGCGGCGCTTTTACAACAAACGCCGCTAAAAGA
* * * *
4891367 CCTAAGCATTAGCGGCGCTTTATAGGAAGCGCCGCTAATTCCGTGAATAGCTCG
63 CCTAAGAATTAGCGGCGCTTTATA-GAAGCGCCACTAAATCCCTGAATAGCTCG
* * * * *
4891421 GGAAACGGCGTCGTTGCGTTTAGTTTTTTTGCGGCGCTTTTA-TACAAACGCCGCTAAA
1 GGAGACGACGTCGTTGCGCTTAGTTTTTTAGCGGCGCTTTTACAACAAACGCCGCTAAA
4891479 TCCCCCAAAA
Statistics
Matches: 141, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
111 4 0.03
112 4 0.03
113 60 0.43
114 57 0.40
115 16 0.11
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (115 bp):
GGAGACGACGTCGTTGCGCTTAGTTTTTTAGCGGCGCTTTTACAACAAACGCCGCTAAAAGACCT
AAGAATTAGCGGCGCTTTATAGAAGCGCCACTAAATCCCTGAATAGCTCG
Found at i:4891361 original size:113 final size:114
Alignment explanation
Indices: 4891217--4891478 Score: 275
Period size: 114 Copynumber: 2.3 Consensus size: 114
4891207 TGGGCTTAGG
* * *
4891217 TTTTTAGCGGCGCTTTTACAACAAACGCCGCTAAAAG-CCTGATAATTAGCGGCGCTTCCTATA-
1 TTTTTA-CGGCGCTTTCAC-ACAAACGCCGCTAAAAGACCTAAGAATTAGCGGCGCTT--TATAG
* *
4891280 AAGCGCCACTAAATCCCTGAA-AGCT-GGCGAGACGATGTCGTTGCG-CTAGATT
62 AAGCGCCACTAAATCCCTGAATAGCTCGG-GAAACGACGTCGTTGCGTCTAG-TT
* * *
4891332 TTTTTACGGCGCTTTCCCAGAAACGCCGCT-AAAGACCTAAGCATTAGCGGCGCTTTATAGGAAG
1 TTTTTACGGCGCTTTCACACAAACGCCGCTAAAAGACCTAAGAATTAGCGGCGCTTTATA-GAAG
* * * * *
4891396 CGCCGCTAATTCCGTGAATAGCTCGGGAAACGGCGTCGTTGCGTTTAGTT
65 CGCCACTAAATCCCTGAATAGCTCGGGAAACGACGTCGTTGCGTCTAGTT
* * *
4891446 TTTTTGCGGCGCTTTTATACAAACGCCGCTAAA
1 TTTTTACGGCGCTTTCACACAAACGCCGCTAAA
4891479 TCCCCCAAAA
Statistics
Matches: 122, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
111 4 0.03
112 4 0.03
113 46 0.38
114 55 0.45
115 13 0.11
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (114 bp):
TTTTTACGGCGCTTTCACACAAACGCCGCTAAAAGACCTAAGAATTAGCGGCGCTTTATAGAAGC
GCCACTAAATCCCTGAATAGCTCGGGAAACGACGTCGTTGCGTCTAGTT
Found at i:4891522 original size:73 final size:71
Alignment explanation
Indices: 4891422--4891695 Score: 435
Period size: 72 Copynumber: 3.8 Consensus size: 71
4891412 AATAGCTCGG
* * * * *
4891422 GAAACGGCGTCGTTGCGTTTA-GTTTTTTTGCGGCGCTT-TTATACAAACGCCGCTAAATCCCCC
1 GAAACGGTGTCGTTGGGCTTAGGGTTTTTAGCGGCGCTTATTA-A-AAACGCCGCTAAAT-CCCC
4891485 AAAATCTCA
63 AAAATCTCA
4891494 GAAACGGTGTCGTTGGGCTTAGGGTTTTTAGCGGCGCTTACTTAAAAACGCCGCTAAATCCCCAA
1 GAAACGGTGTCGTTGGGCTTAGGGTTTTTAGCGGCGCTTA-TTAAAAACGCCGCTAAATCCCCAA
4891559 AATCTCA
65 AATCTCA
4891566 GAAACGGTGTCGTTGGGCTTAGGGTTTTTAGCGGCGCTTACTTAAAAACGCCGCTAAATCCCCAA
1 GAAACGGTGTCGTTGGGCTTAGGGTTTTTAGCGGCGCTTA-TTAAAAACGCCGCTAAATCCCCAA
4891631 AATCTCA
65 AATCTCA
4891638 GAAACGGTGTCGTTGGGCTTAGGGTTTTTAGCGGCGCTTACTTAAAAACGCCGCTAAA
1 GAAACGGTGTCGTTGGGCTTAGGGTTTTTAGCGGCGCTTA-TTAAAAACGCCGCTAAA
4891696 AGCCTGCTTT
Statistics
Matches: 194, Mismatches: 5, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
72 161 0.83
73 29 0.15
74 1 0.01
75 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (71 bp):
GAAACGGTGTCGTTGGGCTTAGGGTTTTTAGCGGCGCTTATTAAAAACGCCGCTAAATCCCCAAA
ATCTCA
Found at i:4894165 original size:91 final size:91
Alignment explanation
Indices: 4894010--4894189 Score: 335
Period size: 91 Copynumber: 2.0 Consensus size: 91
4894000 ACACCGATGT
*
4894010 GTGTGATTCTATGAAAACTTTGTCTCATGCTCAAAATAGGTACTTTATTTTATTCATTGATGATT
1 GTGTGATTCTATGAAAACTTCGTCTCATGCTCAAAATAGGTACTTTATTTTATTCATTGATGATT
4894075 TAACTCGTATGACATGAGTGTATTCG
66 TAACTCGTATGACATGAGTGTATTCG
4894101 GTGTGA-TCGTATGAAAACTTCGTCTCATGCTCAAAATAGGTACTTTATTTTATTCATTGATGAT
1 GTGTGATTC-TATGAAAACTTCGTCTCATGCTCAAAATAGGTACTTTATTTTATTCATTGATGAT
4894165 TTAACTCGTATGACATGAGTGTATT
65 TTAACTCGTATGACATGAGTGTATT
4894190 TTATGAGATA
Statistics
Matches: 87, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
90 2 0.02
91 85 0.98
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (91 bp):
GTGTGATTCTATGAAAACTTCGTCTCATGCTCAAAATAGGTACTTTATTTTATTCATTGATGATT
TAACTCGTATGACATGAGTGTATTCG
Found at i:4895626 original size:31 final size:32
Alignment explanation
Indices: 4895568--4895628 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
4895558 ATTATACTAT
*
4895568 TAATAGTTAGTGACCAAAATGTTACAAATTGA
1 TAATAGTTAGTGACCAAAATGTGACAAATTGA
***
4895600 TAAT-GTTAGTGACCATTTTGTGACAAATT
1 TAATAGTTAGTGACCAAAATGTGACAAATT
4895629 AAAATTCGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (32 bp):
TAATAGTTAGTGACCAAAATGTGACAAATTGA
Found at i:4896665 original size:1 final size:1
Alignment explanation
Indices: 4896659--4896690 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
4896649 TATCGCATTA
*
4896659 CCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
4896691 TGCGTACGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.97, G:0.03, T:0.00
Consensus pattern (1 bp):
C
Found at i:4897606 original size:42 final size:43
Alignment explanation
Indices: 4897545--4897630 Score: 165
Period size: 42 Copynumber: 2.0 Consensus size: 43
4897535 CTTTGTGTTA
4897545 TTACATGTAGGAGCATACGTGTGTGTATATATCTATTACATCT
1 TTACATGTAGGAGCATACGTGTGTGTATATATCTATTACATCT
4897588 TTACATGTA-GAGCATACGTGTGTGTATATATCTATTACATCT
1 TTACATGTAGGAGCATACGTGTGTGTATATATCTATTACATCT
4897630 T
1 T
4897631 ACTATATAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 34 0.79
43 9 0.21
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (43 bp):
TTACATGTAGGAGCATACGTGTGTGTATATATCTATTACATCT
Found at i:4904802 original size:131 final size:132
Alignment explanation
Indices: 4904389--4904814 Score: 518
Period size: 131 Copynumber: 3.2 Consensus size: 132
4904379 GAATTGGTAA
* * * *
4904389 TTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTTAAATCTGCTTCCTTACTA
1 TTTCAACCTACTCCACTGCAAC-TCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTA
* * *
4904454 CCTCA-GAAAGATAAGACTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATATA
65 CCT-AGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTA
4904518 CAAT
129 CAAT
* * ** * * * *
4904522 ATTCAACCTACTCCACTACTGCACAGGGAGATAGGACTGGTGGCTTAAAT-TCACTT-CCTATTA
1 TTTCAACCTACTCCACTGCAACTCAGGGAGATAAGACTGGTGGCTTAAATCT-GCTTCCCTACTA
* * * *
4904585 TCTAGGGAATATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAC
65 CCTAGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAC
4904650 AAT
130 AAT
* * * * *
4904653 CTTCAACCTACTCTACTGCTACTCAGGGAGATAAGAC-AGTGACTTAAATCTGCTTCCCTACTAC
1 TTTCAACCTACTCCACTGCAACTCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTAC
* * * * * *
4904717 CTTGGGAAGATAAGATTCGCTGTCTTTGATCTGCTCTAGTACTGCTTAGGGAGACAAGACCTACA
66 CTAGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACA
4904782 AT
131 AT
4904784 TTTCAACCTACTCCACTGCAAACTCAGGGAG
1 TTTCAACCTACTCCACTGC-AACTCAGGGAG
4904815 GCAGGGCTGG
Statistics
Matches: 246, Mismatches: 42, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
130 14 0.06
131 178 0.72
132 37 0.15
133 17 0.07
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
TTTCAACCTACTCCACTGCAACTCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTAC
CTAGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACA
AT
Found at i:4904892 original size:89 final size:89
Alignment explanation
Indices: 4904794--4905056 Score: 348
Period size: 89 Copynumber: 3.0 Consensus size: 89
4904784 TTTCAACCTA
* * * * * *
4904794 CTCCACTGCAAACTCAGGGAGGCAGGGCTGGTGTTTTTGATCTGCTTCACTACTAGTACAGGAAG
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCGCTGCCAATACAGGAAG
* * *
4904859 ACAAGATCTGTTGTTTTCAG-TCTG
66 ACAAGATCTGCTATCTTCAGCT-TG
* * * * *
4904883 GTCCGCTGCAAACTCAGGGAGGCAAGGTTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAG
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCGCTGCCAATACAGGAAG
4904948 ACAAGATCTGCTATCTTCAGCTTG
66 ACAAGATCTGCTATCTTCAGCTTG
* * *
4904972 CTCCACTACAAACTTAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCGCTGCCAATACAAGAAG
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCGCTGCCAATACAGGAAG
*
4905037 ACAAGATCTGCTATCGTCAG
66 ACAAGATCTGCTATCTTCAG
4905057 TCTGCCCGCT
Statistics
Matches: 150, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
89 149 0.99
90 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (89 bp):
CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCGCTGCCAATACAGGAAG
ACAAGATCTGCTATCTTCAGCTTG
Found at i:4905236 original size:44 final size:44
Alignment explanation
Indices: 4905161--4905266 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 44
4905151 CGCTTCATTG
* * *
4905161 CAACTTCAGGGAGATAGGATTAGTAGCTTCAATCC-GCTCCACTG
1 CAACTTCAGGGAGATAAGATTAGTAGCTTCAA-CCTACTCCACTA
* * * ** *
4905205 TAACTTCAGGGAGATAATATTGGTATTTTCAACCTACTCCATTA
1 CAACTTCAGGGAGATAAGATTAGTAGCTTCAACCTACTCCACTA
4905249 CAACTTCAGGGAGATAAG
1 CAACTTCAGGGAGATAAG
4905267 GTTTGATGTG
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
43 2 0.04
44 48 0.96
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTAGTAGCTTCAACCTACTCCACTA
Found at i:4905623 original size:44 final size:44
Alignment explanation
Indices: 4905376--4905794 Score: 262
Period size: 44 Copynumber: 9.5 Consensus size: 44
4905366 CTATCTTCAG
* * * *
4905376 TCTGTTCCACTGTAACTTCAGGGAGATAAGAC-T-TCACTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
** * * * **
4905418 TCCACTCCACTGTAACTTCAGGGAGATAGGA-TTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAA
* * *
4905462 TCT-CTTCCACTGTAACTTCAGGGAGATAAGA-TT-CACCATCTTTAG
1 TCTGC-TCCACTGCAACTTCAGGGAGATAAGACTTGTA--A-CTTTAA
* * * * ** * *
4905507 TTTGC-CTCACTGTAACTTCAGGGGGATAAGACCTGCTTTCTTCAG
1 TCTGCTC-CACTGCAACTTCAGGGAGATAAGACTTG-TAACTTTAA
* * *
4905552 TTTGCTCCATTGCAACTTCAGGAAGATAAGACTTGTAACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
* * * **
4905596 TCCGCTCCACTGCAACTTTAGGGAGATAAGA-TTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAA
* * * * * *
4905640 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTTAA
* * ** * *
4905685 TCTACCCCACTGCAACTTCAAGGGA-ATAAGACTTGCTTTCTTCAG
1 TCTGCTCCACTGCAACTTC-AGGGAGATAAGACTTG-TAACTTTAA
* * *
4905730 TCTGCCCCACTGCAATTTTAGGGAGATAAGACTTGTAACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
*
4905774 TCTGCTCCACTGCAACCTCAG
1 TCTGCTCCACTGCAACTTCAG
4905795 ATAGATAGGA
Statistics
Matches: 296, Mismatches: 63, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
42 28 0.09
43 3 0.01
44 129 0.44
45 129 0.44
46 7 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
Found at i:4905635 original size:178 final size:178
Alignment explanation
Indices: 4905369--4905794 Score: 570
Period size: 178 Copynumber: 2.4 Consensus size: 178
4905359 AGATTTACTA
* * * * * *
4905369 TCTTCAGTCTGTTCCACTGTAACTTCAGGGAGATAAGAC-T-TCACTTCAATCCACTCCACTGTA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCACTGCA
* * *
4905432 ACTTCAGGGAGATAGGATTATTGGCTTTAATCT-CTTCCACTGTAACTTCAGGGAGATAAGATTC
66 ACTTCAGGGAGATAAGATTATTGGCTTTAATCTGC-TCCACTGCAACTTCAAGGAGATAAGATTC
* * * * * * *
4905496 ACCATCTTTAGTTTGCCTCACTGTAACTTCAGGGGGATAAGACCTGCTT
130 ACCATCTTCAGTCTACCCCACTGCAACTTCAAGGGAATAAGACCTGCTT
* * *
4905545 TCTTCAGTTTGCTCCATTGCAACTTCAGGAAGATAAGACTTGTAACTTTAATCCGCTCCACTGCA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCACTGCA
* **
4905610 ACTTTAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTG
66 ACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCA
*
4905675 CCATCTTCAGTCTACCCCACTGCAACTTCAAGGGAATAAGACTTGCTT
131 CCATCTTCAGTCTACCCCACTGCAACTTCAAGGGAATAAGACCTGCTT
* * * *
4905723 TCTTCAGTCTGCCCCACTGCAATTTTAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGCA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCACTGCA
*
4905788 ACCTCAG
66 ACTTCAG
4905795 ATAGATAGGA
Statistics
Matches: 215, Mismatches: 32, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
176 34 0.16
177 1 0.00
178 179 0.83
179 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (178 bp):
TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCACTGCA
ACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCA
CCATCTTCAGTCTACCCCACTGCAACTTCAAGGGAATAAGACCTGCTT
Found at i:4905801 original size:44 final size:44
Alignment explanation
Indices: 4905376--4905801 Score: 190
Period size: 45 Copynumber: 9.6 Consensus size: 44
4905366 CTATCTTCAG
* * * * *
4905376 TCTGTTCCACTGTAACTTCAGGGAGATAAGAC-T-TCACTTCAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAACTTTAA
** * * * * **
4905418 TCCACTCCACTGTAACTTCAGGGAGATAGGA-TTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTT-GTAACTTTAA
* * * *
4905462 TCT-CTTCCACTGTAACTTCAGGGAGATAAGA-TT-CACCATCTTTAG
1 TCTGC-TCCACTGCAACTTCAGAGAGATAAGACTTGTA--A-CTTTAA
* * * * * ** * *
4905507 TTTGC-CTCACTGTAACTTCAGGGGGATAAGACCTGCTTTCTTCAG
1 TCTGCTC-CACTGCAACTTCAGAGAGATAAGACTTG-TAACTTTAA
* *
4905552 TTTGCTCCATTGCAACTTCAG-GAAGATAAGACTTGTAACTTTAA
1 TCTGCTCCACTGCAACTTCAGAG-AGATAAGACTTGTAACTTTAA
* * * * **
4905596 TCCGCTCCACTGCAACTTTAGGGAGATAAGA-TTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTT-GTAACTTTAA
* * * * *
4905640 TCTGCTCCACTGCAACTTCA-AGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGA-GAGATAAGACTTG-TAACTTTAA
* * * ** * *
4905685 TCTACCCCACTGCAACTTCA-AGGGAATAAGACTTGCTTTCTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAG-ATAAGACTTG-TAACTTTAA
* * * *
4905730 TCTGCCCCACTGCAATTTTAGGGAGATAAGACTTGTAACTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAACTTTAA
* *
4905774 TCTGCTCCACTGCAACCTCAGATAGATA
1 TCTGCTCCACTGCAACTTCAGAGAGATA
4905802 GGATTTGTGG
Statistics
Matches: 298, Mismatches: 65, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
42 28 0.09
43 3 0.01
44 130 0.44
45 132 0.44
46 5 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAACTTTAA
Found at i:4906117 original size:24 final size:24
Alignment explanation
Indices: 4906090--4906165 Score: 134
Period size: 24 Copynumber: 3.2 Consensus size: 24
4906080 TTATCCCTAT
4906090 TGTAATCTTCAAGGTTCAATCCAC
1 TGTAATCTTCAAGGTTCAATCCAC
4906114 TGTAATCTTCAAGGTTCAATCCAC
1 TGTAATCTTCAAGGTTCAATCCAC
* *
4906138 TGTAATCTTCAAGGTTTAGTCCAC
1 TGTAATCTTCAAGGTTCAATCCAC
4906162 TGTA
1 TGTA
4906166 TTTTTAGGAC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (24 bp):
TGTAATCTTCAAGGTTCAATCCAC
Found at i:4907091 original size:9 final size:9
Alignment explanation
Indices: 4907079--4907111 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
4907069 TATTTTTCTT
4907079 TTTTTTTAA
1 TTTTTTTAA
4907088 TTTTTTTAA
1 TTTTTTTAA
*
4907097 -TTTTTTGA
1 TTTTTTTAA
4907105 TTTTTTT
1 TTTTTTT
4907112 CTTATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:4910383 original size:19 final size:20
Alignment explanation
Indices: 4910359--4910405 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
4910349 TGTGAAAATC
*
4910359 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGCAATG
*
4910378 TAATGCAAATGCATGGAATG
1 TAATGCAAATGCATGCAATG
4910398 -AATGCAAA
1 TAATGCAAA
4910406 AAGAAATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGCATGCAATG
Found at i:4912205 original size:15 final size:16
Alignment explanation
Indices: 4912187--4912219 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
4912177 AAATGTAAAC
4912187 AAATTTAAAAAT-AAT
1 AAATTTAAAAATGAAT
*
4912202 AAATTTGAAAATGAAT
1 AAATTTAAAAATGAAT
4912218 AA
1 AA
4912220 TAAGGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (16 bp):
AAATTTAAAAATGAAT
Found at i:4913279 original size:9 final size:9
Alignment explanation
Indices: 4913249--4913296 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
4913239 TGTAAAAACT
*
4913249 TTTTATATT
1 TTTTATATA
4913258 TTTTAT-TA
1 TTTTATATA
*
4913266 ATTTATATA
1 TTTTATATA
*
4913275 TTTTA-AAA
1 TTTTATATA
4913283 TTTTATATA
1 TTTTATATA
4913292 TTTTA
1 TTTTA
4913297 AATTTAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
8 13 0.41
9 19 0.59
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTATATA
Found at i:4913287 original size:17 final size:17
Alignment explanation
Indices: 4913249--4913298 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
4913239 TGTAAAAACT
* *
4913249 TTTTATATTTTTTATTAA
1 TTTTATATATTTTA-AAA
4913267 -TTTATATATTTTAAAA
1 TTTTATATATTTTAAAA
4913283 TTTTATATATTTTAAA
1 TTTTATATATTTTAAA
4913299 TTTAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 2 0.07
17 27 0.93
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATATATTTTAAAA
Found at i:4916022 original size:30 final size:31
Alignment explanation
Indices: 4915988--4916056 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
4915978 ACTTAACAAC
*
4915988 TCAATGATTTAAAT-AAAACTTTTGAATAAT
1 TCAATGACTTAAATGAAAACTTTTGAATAAT
*
4916018 TCAATGACTTAAATGAAAACTTTTGAATAGT
1 TCAATGACTTAAATGAAAACTTTTGAATAAT
*
4916049 TCATTGAC
1 TCAATGAC
4916057 CATTTTGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 13 0.37
31 22 0.63
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (31 bp):
TCAATGACTTAAATGAAAACTTTTGAATAAT
Found at i:4926382 original size:45 final size:46
Alignment explanation
Indices: 4926305--4926440 Score: 145
Period size: 45 Copynumber: 3.0 Consensus size: 46
4926295 ACACATTTGC
* * * * *
4926305 AGATTAAAGCTGCTAATACGGTGTGTGTAAACCACT-AGTCGGTG-A
1 AGATAAAAGCTGCTAATACGATGTGGGGAAACCACTAAAT-GGTGCA
* *
4926350 AGATAAAAGCTTCTAATATGATGTGGGGAAACCACTAAATGGTGCA
1 AGATAAAAGCTGCTAATACGATGTGGGGAAACCACTAAATGGTGCA
**
4926396 A-ATAAAAGCTGCTAATAC-AGTGTGGATAAACCACTAAATGGTGCA
1 AGATAAAAGCTGCTAATACGA-TGTGGGGAAACCACTAAATGGTGCA
4926441 GACAAGTTGC
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
44 1 0.01
45 72 0.94
46 4 0.05
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (46 bp):
AGATAAAAGCTGCTAATACGATGTGGGGAAACCACTAAATGGTGCA
Found at i:4926911 original size:24 final size:24
Alignment explanation
Indices: 4926875--4926920 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
4926865 GAAAATAGGG
* * *
4926875 GAAAAATTGTAAAATTTAAAAATA
1 GAAAAAATATAAAATCTAAAAATA
4926899 GAAAAAATATAAAATCTAAAAA
1 GAAAAAATATAAAATCTAAAAA
4926921 AATAGGGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (24 bp):
GAAAAAATATAAAATCTAAAAATA
Found at i:4928499 original size:22 final size:22
Alignment explanation
Indices: 4928450--4928503 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
4928440 CAAGTTTCGT
4928450 TTTAGATTAATTAATTTATATAC
1 TTTA-ATTAATTAATTTATATAC
*
4928473 -CTAATTATATTAATTTA-ATAC
1 TTTAATTA-ATTAATTTATATAC
4928494 TTTAATTAAT
1 TTTAATTAAT
4928504 CATTTATGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTAATTAATTAATTTATATAC
Found at i:4937957 original size:89 final size:90
Alignment explanation
Indices: 4937790--4937966 Score: 241
Period size: 90 Copynumber: 2.0 Consensus size: 90
4937780 TTTATTTTTA
* *
4937790 TTTTTTTGCACTCAATTGACCACTTGAATTTTCAAAATGCATAAAAAAAGCCCTCAAACTTCTTA
1 TTTTTTTGCACTCAATTGACCACTTGAACTTTCAAAATGCATAAAAAAAGACCTCAAACTTCTTA
*
4937855 AAAAAAACAATTAAACCCTTGCTTT
66 AAAAAAACAATTAAACCCCTGCTTT
*** *
4937880 TTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCAT-CAAAAAGACCTCAAAACTT-TT
1 TTTTTTTGCACTCAATTGACCACTTGAACTTTCAAAATGCATAAAAAAAGACCTC-AAACTTCTT
* * *
4937943 CAAAAAAGCAATTAAGCCCCTGCT
65 AAAAAAAACAATTAAACCCCTGCT
4937967 CTAATTAAAA
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
89 32 0.42
90 44 0.58
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.32
Consensus pattern (90 bp):
TTTTTTTGCACTCAATTGACCACTTGAACTTTCAAAATGCATAAAAAAAGACCTCAAACTTCTTA
AAAAAAACAATTAAACCCCTGCTTT
Found at i:4938016 original size:20 final size:19
Alignment explanation
Indices: 4937988--4938094 Score: 99
Period size: 19 Copynumber: 5.5 Consensus size: 19
4937978 TTAGAAAAAA
4937988 TTTATAAAAAATAATAAAT
1 TTTATAAAAAATAATAAAT
* *
4938007 TTTAGAAAAAATATTAAAT
1 TTTATAAAAAATAATAAAT
* *
4938026 TTTAATAAAAAAT-TTAAAA
1 TTT-ATAAAAAATAATAAAT
* * *
4938045 TTTATTAAAAATTATAATTTT
1 TTTATAAAAAATAATAA--AT
* *
4938066 TTTATAAAAATTAAAAAAT
1 TTTATAAAAAATAATAAAT
4938085 TTTATAAAAA
1 TTTATAAAAA
4938095 TCAGAAAAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
18 8 0.11
19 42 0.59
20 8 0.11
21 13 0.18
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (19 bp):
TTTATAAAAAATAATAAAT
Found at i:4938016 original size:39 final size:39
Alignment explanation
Indices: 4937972--4938104 Score: 99
Period size: 39 Copynumber: 3.4 Consensus size: 39
4937962 CTGCTCTAAT
4937972 TAAAAATTAGAAAAAATTTATAAAAAATAATAAATTTTA
1 TAAAAATTAGAAAAAATTTATAAAAAATAATAAATTTTA
* * ** * * *
4938011 GAAAAAATA-TTAAATTTTAATAAAAAAT-TTAAAATTTA
1 TAAAAATTAGAAAAAATTT-ATAAAAAATAATAAATTTTA
* **** * *
4938049 TTAAAAATTATAATTTTTTTATAAAAATTAAAAAATTTTA
1 -TAAAAATTAGAAAAAATTTATAAAAAATAATAAATTTTA
*
4938089 TAAAAATCAGAAAAAA
1 TAAAAATTAGAAAAAA
4938105 ATTAACAACC
Statistics
Matches: 66, Mismatches: 24, Indels: 8
0.67 0.24 0.08
Matches are distributed among these distances:
38 14 0.21
39 41 0.62
40 11 0.17
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (39 bp):
TAAAAATTAGAAAAAATTTATAAAAAATAATAAATTTTA
Found at i:4938095 original size:19 final size:19
Alignment explanation
Indices: 4937972--4938095 Score: 90
Period size: 19 Copynumber: 6.4 Consensus size: 19
4937962 CTGCTCTAAT
*
4937972 TAAAAATTAGAAAAAATTTA
1 TAAAAATTA-AAAAATTTTA
* *
4937992 TAAAAAATAATAAATTTTA
1 TAAAAATTAAAAAATTTTA
* * **
4938011 GAAAAAATATTAAATTTTAA
1 TAAAAATTAAAAAATTTT-A
*
4938031 TAAAAAATT-TAAAA-TTTA
1 T-AAAAATTAAAAAATTTTA
***
4938049 TTAAAAATTATAATTTTTTTA
1 -TAAAAATTA-AAAAATTTTA
4938070 TAAAAATTAAAAAATTTTA
1 TAAAAATTAAAAAATTTTA
4938089 TAAAAAT
1 TAAAAAT
4938096 CAGAAAAAAA
Statistics
Matches: 83, Mismatches: 15, Indels: 13
0.75 0.14 0.12
Matches are distributed among these distances:
18 8 0.10
19 42 0.51
20 23 0.28
21 10 0.12
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
TAAAAATTAAAAAATTTTA
Found at i:4938102 original size:19 final size:19
Alignment explanation
Indices: 4938065--4938103 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
4938055 ATTATAATTT
*
4938065 TTTTATAAAAATTAAAAAA
1 TTTTATAAAAATCAAAAAA
4938084 TTTTATAAAAATCAGAAAAA
1 TTTTATAAAAATCA-AAAAA
4938104 AATTAACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
TTTTATAAAAATCAAAAAA
Found at i:4939887 original size:38 final size:38
Alignment explanation
Indices: 4939816--4939896 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
4939806 GAGATGTTTC
* **
4939816 ACATGTATTCAGTCCAATAGTAGAAATTTACATGCTTA
1 ACATGTATTCAGTCCAACAGTAGAAATAGACATGCTTA
* * *
4939854 ACATGTATTCAGTTCAACGGTAGCAATAGACATGCTTA
1 ACATGTATTCAGTCCAACAGTAGAAATAGACATGCTTA
4939892 ACATG
1 ACATG
4939897 CAATTAGTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (38 bp):
ACATGTATTCAGTCCAACAGTAGAAATAGACATGCTTA
Found at i:4943397 original size:21 final size:22
Alignment explanation
Indices: 4943351--4943403 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
4943341 CAATCATTTT
4943351 AAAACATTT-GTCTATTTTGGTAG
1 AAAAC-TTTAGTCTATTTT-GTAG
4943374 AAAACTTTAGTCTATTTT-TAG
1 AAAACTTTAGTCTATTTTGTAG
*
4943395 AAAAGTTTA
1 AAAACTTTA
4943404 CAAGTTTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 11 0.39
22 3 0.11
23 14 0.50
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (22 bp):
AAAACTTTAGTCTATTTTGTAG
Found at i:4958953 original size:25 final size:25
Alignment explanation
Indices: 4958924--4958976 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
4958914 TCAAGTATGG
4958924 AATTATCTGCCAAAGACAGAGAAGA
1 AATTATCTGCCAAAGACAGAGAAGA
*
4958949 AATTATCTGCCAAAGATAGAGAAGA
1 AATTATCTGCCAAAGACAGAGAAGA
4958974 AAT
1 AAT
4958977 CCAAAATCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
AATTATCTGCCAAAGACAGAGAAGA
Found at i:4965974 original size:22 final size:22
Alignment explanation
Indices: 4965944--4965994 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
4965934 GACAAGCCAT
* *
4965944 CACTAATTTGCAGTTAAACTAC
1 CACTGATTTGCAGATAAACTAC
* * *
4965966 TACTGATTTGTAGATAAACTGC
1 CACTGATTTGCAGATAAACTAC
4965988 CACTGAT
1 CACTGAT
4965995 AACACTGATG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (22 bp):
CACTGATTTGCAGATAAACTAC
Found at i:4972935 original size:20 final size:20
Alignment explanation
Indices: 4972901--4972968 Score: 54
Period size: 20 Copynumber: 3.5 Consensus size: 20
4972891 CACAAGGGAA
* *
4972901 GAAAAAGAAAGAAGATGAAGG
1 GAAAAAG-AATAAGAAGAAGG
4972922 GAAAAAGAATAAGAAGAA--
1 GAAAAAGAATAAGAAGAAGG
* *
4972940 G-AAAAGAA-GAGAGGAAGAG
1 GAAAAAGAATAAGAAGAAG-G
4972959 GAAAAAGAAT
1 GAAAAAGAAT
4972969 GTCACAGAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
16 6 0.16
17 7 0.18
18 1 0.03
19 1 0.03
20 16 0.42
21 7 0.18
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (20 bp):
GAAAAAGAATAAGAAGAAGG
Found at i:4976084 original size:23 final size:23
Alignment explanation
Indices: 4976032--4976085 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
4976022 CACGTACCTC
* * * *
4976032 TCTGTGATGCCTTTGTGGCGTAT
1 TCTGTAATACCTTTGTGACATAT
4976055 T-TCGTAATACCTTTGTGACATAT
1 TCT-GTAATACCTTTGTGACATAT
4976078 TCTGTAAT
1 TCTGTAAT
4976086 GCTTCTGTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 1 0.04
23 23 0.92
24 1 0.04
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (23 bp):
TCTGTAATACCTTTGTGACATAT
Found at i:4979975 original size:23 final size:22
Alignment explanation
Indices: 4979949--4979991 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
4979939 TAGATCTCAT
4979949 AATAAGATGTA-AATCCCTAATCG
1 AATAAG-TGTATAA-CCCTAATCG
*
4979972 AATATGTGTATAACCCTAAT
1 AATAAGTGTATAACCCTAAT
4979992 GACATGCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (22 bp):
AATAAGTGTATAACCCTAATCG
Found at i:4998156 original size:21 final size:23
Alignment explanation
Indices: 4998113--4998157 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
4998103 TTATTTTTAG
* *
4998113 TTTTTATATTTTTTCAAATTTAT
1 TTTTTATATGTTTTCAAACTTAT
4998136 TTTTTATA-GTTTT-AAACTTAT
1 TTTTTATATGTTTTCAAACTTAT
4998157 T
1 T
4998158 ATTGATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 4 0.20
23 8 0.40
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTTATATGTTTTCAAACTTAT
Found at i:5009406 original size:328 final size:328
Alignment explanation
Indices: 5008809--5009464 Score: 1312
Period size: 328 Copynumber: 2.0 Consensus size: 328
5008799 TTTTTACTCA
5008809 TTTTCCACAATAATCAATATCTTAATAAAAATCAAAATTAAACCAATCAATTCTATTAAAAATAA
1 TTTTCCACAATAATCAATATCTTAATAAAAATCAAAATTAAACCAATCAATTCTATTAAAAATAA
5008874 AAAAAATTAACTCTATATAAAAATCCCAATAAGTAAATGCATGAAGGGTTTTATAAATTCATAGA
66 AAAAAATTAACTCTATATAAAAATCCCAATAAGTAAATGCATGAAGGGTTTTATAAATTCATAGA
5008939 GATACGGATAGTGAATTATATAAATTGAACTTTTTAATAGAAATCAAATTAAATTTCAAAAGAAG
131 GATACGGATAGTGAATTATATAAATTGAACTTTTTAATAGAAATCAAATTAAATTTCAAAAGAAG
5009004 TTGATTAGATTTACTTACGTTACCATGGATAAGAAATAGTGATTATAAACATCCTTTGTAATGAA
196 TTGATTAGATTTACTTACGTTACCATGGATAAGAAATAGTGATTATAAACATCCTTTGTAATGAA
5009069 GAGAAACAGATCATCCCTAAGCAAATATCAAAAAGTAAACTTTGAGAGTGAATCTTACTTCTCGA
261 GAGAAACAGATCATCCCTAAGCAAATATCAAAAAGTAAACTTTGAGAGTGAATCTTACTTCTCGA
5009134 TTT
326 TTT
5009137 TTTTCCACAATAATCAATATCTTAATAAAAATCAAAATTAAACCAATCAATTCTATTAAAAATAA
1 TTTTCCACAATAATCAATATCTTAATAAAAATCAAAATTAAACCAATCAATTCTATTAAAAATAA
5009202 AAAAAATTAACTCTATATAAAAATCCCAATAAGTAAATGCATGAAGGGTTTTATAAATTCATAGA
66 AAAAAATTAACTCTATATAAAAATCCCAATAAGTAAATGCATGAAGGGTTTTATAAATTCATAGA
5009267 GATACGGATAGTGAATTATATAAATTGAACTTTTTAATAGAAATCAAATTAAATTTCAAAAGAAG
131 GATACGGATAGTGAATTATATAAATTGAACTTTTTAATAGAAATCAAATTAAATTTCAAAAGAAG
5009332 TTGATTAGATTTACTTACGTTACCATGGATAAGAAATAGTGATTATAAACATCCTTTGTAATGAA
196 TTGATTAGATTTACTTACGTTACCATGGATAAGAAATAGTGATTATAAACATCCTTTGTAATGAA
5009397 GAGAAACAGATCATCCCTAAGCAAATATCAAAAAGTAAACTTTGAGAGTGAATCTTACTTCTCGA
261 GAGAAACAGATCATCCCTAAGCAAATATCAAAAAGTAAACTTTGAGAGTGAATCTTACTTCTCGA
5009462 TTT
326 TTT
5009465 CATATAGATA
Statistics
Matches: 328, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
328 328 1.00
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (328 bp):
TTTTCCACAATAATCAATATCTTAATAAAAATCAAAATTAAACCAATCAATTCTATTAAAAATAA
AAAAAATTAACTCTATATAAAAATCCCAATAAGTAAATGCATGAAGGGTTTTATAAATTCATAGA
GATACGGATAGTGAATTATATAAATTGAACTTTTTAATAGAAATCAAATTAAATTTCAAAAGAAG
TTGATTAGATTTACTTACGTTACCATGGATAAGAAATAGTGATTATAAACATCCTTTGTAATGAA
GAGAAACAGATCATCCCTAAGCAAATATCAAAAAGTAAACTTTGAGAGTGAATCTTACTTCTCGA
TTT
Found at i:5009872 original size:14 final size:14
Alignment explanation
Indices: 5009853--5009883 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
5009843 ATAAAAGAAG
5009853 TAAAGATCTAATTC
1 TAAAGATCTAATTC
5009867 TAAAGATCTAATTC
1 TAAAGATCTAATTC
5009881 TAA
1 TAA
5009884 TAATTATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (14 bp):
TAAAGATCTAATTC
Found at i:5012635 original size:90 final size:91
Alignment explanation
Indices: 5012524--5012704 Score: 355
Period size: 90 Copynumber: 2.0 Consensus size: 91
5012514 TAAAAAATTT
5012524 CTATATGGATATCATTATATTTGTAAAAATCTATAAATAGTGTTAATAAAATAAAATAAATATTA
1 CTATATGGATATCATTATATTTGTAAAAATCTATAAATAGTGTTAATAAAATAAAATAAATATTA
5012589 GAATTAACTAAAAATAATTTTTGAAG
66 GAATTAACTAAAAATAATTTTTGAAG
5012615 CTATATGGAT-TCATTATATTTGTAAAAATCTATAAATAGTGTTAATAAAATAAAATAAATATTA
1 CTATATGGATATCATTATATTTGTAAAAATCTATAAATAGTGTTAATAAAATAAAATAAATATTA
5012679 GAATTAACTAAAAATAATTTTTGAAG
66 GAATTAACTAAAAATAATTTTTGAAG
5012705 TTTAAATTTT
Statistics
Matches: 90, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 80 0.89
91 10 0.11
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (91 bp):
CTATATGGATATCATTATATTTGTAAAAATCTATAAATAGTGTTAATAAAATAAAATAAATATTA
GAATTAACTAAAAATAATTTTTGAAG
Found at i:5013944 original size:19 final size:19
Alignment explanation
Indices: 5013917--5013954 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
5013907 ATAATAAAAT
* *
5013917 ATTTTTTAAAACTTATAAA
1 ATTTATTAAAAATTATAAA
5013936 ATTTATTAAAAATTATAAA
1 ATTTATTAAAAATTATAAA
5013955 TACTTAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTATTAAAAATTATAAA
Found at i:5014008 original size:30 final size:30
Alignment explanation
Indices: 5013974--5014031 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
5013964 CAACTATAAA
* *
5013974 ATATAACTAATTGTTGAAAA-ATAAAAATAT
1 ATATAA-TAATTATTAAAAATATAAAAATAT
5014004 ATATAATAATTATTAAAAATATAAAAAT
1 ATATAATAATTATTAAAAATATAAAAAT
5014032 TCTAAAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (30 bp):
ATATAATAATTATTAAAAATATAAAAATAT
Found at i:5014700 original size:94 final size:94
Alignment explanation
Indices: 5014539--5014727 Score: 369
Period size: 94 Copynumber: 2.0 Consensus size: 94
5014529 TATAAAAATA
*
5014539 ACATCACGTAAAGCATATATAACAACCTATTTTTCAGTGGTGTCGGAAATGGTGGTTTCGGAACC
1 ACATCACATAAAGCATATATAACAACCTATTTTTCAGTGGTGTCGGAAATGGTGGTTTCGGAACC
5014604 CCATTTCCAATAATCAAATCGTAAATATT
66 CCATTTCCAATAATCAAATCGTAAATATT
5014633 ACATCACATAAAGCATATATAACAACCTATTTTTCAGTGGTGTCGGAAATGGTGGTTTCGGAACC
1 ACATCACATAAAGCATATATAACAACCTATTTTTCAGTGGTGTCGGAAATGGTGGTTTCGGAACC
5014698 CCATTTCCAATAATCAAATCGTAAATATT
66 CCATTTCCAATAATCAAATCGTAAATATT
5014727 A
1 A
5014728 TTATTTTAAT
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (94 bp):
ACATCACATAAAGCATATATAACAACCTATTTTTCAGTGGTGTCGGAAATGGTGGTTTCGGAACC
CCATTTCCAATAATCAAATCGTAAATATT
Found at i:5015386 original size:19 final size:20
Alignment explanation
Indices: 5015354--5015392 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
5015344 AGAGACTAAA
5015354 ATGTATAAAATTTGAAATTG
1 ATGTATAAAATTTGAAATTG
* *
5015374 ATGT-TAAATTTTGTAATTG
1 ATGTATAAAATTTGAAATTG
5015393 TAGATAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (20 bp):
ATGTATAAAATTTGAAATTG
Found at i:5020142 original size:21 final size:21
Alignment explanation
Indices: 5020117--5020199 Score: 76
Period size: 21 Copynumber: 4.0 Consensus size: 21
5020107 AGTCATATAA
5020117 GTTTCAGTTTAACCCTTCTGG
1 GTTTCAGTTTAACCCTTCTGG
* * * * *
5020138 GTTTCAGTTCAGCTCTTTTGA
1 GTTTCAGTTTAACCCTTCTGG
* **
5020159 GCTTCAGTTTAACCCTAATGG
1 GTTTCAGTTTAACCCTTCTGG
* *
5020180 GTTTCAGTTTAGCTCTTCTG
1 GTTTCAGTTTAACCCTTCTG
5020200 ATCTTTAGAT
Statistics
Matches: 45, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTTCTGG
Found at i:5020168 original size:42 final size:42
Alignment explanation
Indices: 5020119--5020289 Score: 157
Period size: 42 Copynumber: 4.1 Consensus size: 42
5020109 TCATATAAGT
* *
5020119 TTCAGTTTAACCCTTCTGGGTTTCAGTTCAGCTCTTTTGAGC
1 TTCAGTTTAACCCTTATGGGTTTCAGTTCAGCTCTTATGAGC
* * * *
5020161 TTCAGTTTAACCCTAATGGGTTTCAGTTTAGCTCTTCTGATC
1 TTCAGTTTAACCCTTATGGGTTTCAGTTCAGCTCTTATGAGC
* * * * *
5020203 TTTAGATTAACACTGATGGGTTTTC-GTTCAGCTCCTATGAGC
1 TTCAGTTTAACCCTTATGGG-TTTCAGTTCAGCTCTTATGAGC
* * * * * *
5020245 TTCCGTTCAACCCTTACGGGTTTTC-GTTTAGCACTTATGTGC
1 TTCAGTTTAACCCTTATGGG-TTTCAGTTCAGCTCTTATGAGC
5020287 TTC
1 TTC
5020290 TGTGCAACCT
Statistics
Matches: 104, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 100 0.96
43 4 0.04
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.42
Consensus pattern (42 bp):
TTCAGTTTAACCCTTATGGGTTTCAGTTCAGCTCTTATGAGC
Done.