Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 21 of 141
Found at i:6699124 original size:178 final size:175
Alignment explanation
Indices: 6698828--6699179 Score: 659
Period size: 178 Copynumber: 2.0 Consensus size: 175
6698818 GCAGCAGATG
6698828 ATATATATATATATAACAAATAATTTACCCAAGTTAGTTCGTTTGGGACCTTCCATCTGGTCAAA
1 ATATATATATATATAACAAATAATTTACCCAAGTTAGTTCGTTTGGGACCTTCCATCTGGTCAAA
*
6698893 TTCAAAGTAGCAGTTAACCAGAGCCACTTGATATATACCTTCAAAACTCAACCATTCATGATTAA
66 TTCAAAGTAGCAGTTAACCAGAGCCACTTGATAGATACCTTCAAAACTCAACCATTCATGATTAA
6698958 GGGAAATCCTTCAATCATTTAATTTTCTTCATGTTCATTTAACCT
131 GGGAAATCCTTCAATCATTTAATTTTCTTCATGTTCATTTAACCT
6699003 ATATATATATATATAACAAATAATTTACCCAAGTAATTAGTTCGTTTGGGACCTTCCATCTGGTC
1 ATATATATATATATAACAAATAATTTACCCAAG---TTAGTTCGTTTGGGACCTTCCATCTGGTC
*
6699068 ATATTCAAAGTAGCAGTTAACCAGAGCCACTTGATAGATACCTTCAAAACTCAACCATTCATGAT
63 AAATTCAAAGTAGCAGTTAACCAGAGCCACTTGATAGATACCTTCAAAACTCAACCATTCATGAT
6699133 TAAGGGAAATCCTTCAATCATTTAATTTTCTTCATGTTCATTTAACC
128 TAAGGGAAATCCTTCAATCATTTAATTTTCTTCATGTTCATTTAACC
6699180 AGCCAAATTT
Statistics
Matches: 172, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
175 33 0.19
178 139 0.81
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (175 bp):
ATATATATATATATAACAAATAATTTACCCAAGTTAGTTCGTTTGGGACCTTCCATCTGGTCAAA
TTCAAAGTAGCAGTTAACCAGAGCCACTTGATAGATACCTTCAAAACTCAACCATTCATGATTAA
GGGAAATCCTTCAATCATTTAATTTTCTTCATGTTCATTTAACCT
Found at i:6701450 original size:119 final size:120
Alignment explanation
Indices: 6701253--6701491 Score: 471
Period size: 119 Copynumber: 2.0 Consensus size: 120
6701243 ACAGCTTTGA
6701253 TCCATAGGACATTGCTTTCTAGTTCCCAATATAAGAATTTTGTACGAGCTATCCTAAAATCCATT
1 TCCATAGGACATTGCTTTCTAGTTCCCAATATAAGAATTTTGTACGAGCTATCCTAAAATCCATT
6701318 TTTTCTAATTTAGTTATACCTTTAAAAATTGGGTAATTTTGATG-AAACGATTTT
66 TTTTCTAATTTAGTTATACCTTTAAAAATTGGGTAATTTTGATGAAAACGATTTT
6701372 TCCATAGGACATTGCTTTCTAGTTCCCAATATAAGAATTTTGTACGAGCTATCCTAAAATCCATT
1 TCCATAGGACATTGCTTTCTAGTTCCCAATATAAGAATTTTGTACGAGCTATCCTAAAATCCATT
6701437 TTTTCTAATTTAGTTATACCTTTAAAAATTGGGTAATTTTGATGAAAACGATTTT
66 TTTTCTAATTTAGTTATACCTTTAAAAATTGGGTAATTTTGATGAAAACGATTTT
6701492 AAAAAATAAT
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
119 109 0.92
120 10 0.08
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (120 bp):
TCCATAGGACATTGCTTTCTAGTTCCCAATATAAGAATTTTGTACGAGCTATCCTAAAATCCATT
TTTTCTAATTTAGTTATACCTTTAAAAATTGGGTAATTTTGATGAAAACGATTTT
Found at i:6705358 original size:30 final size:27
Alignment explanation
Indices: 6705286--6705358 Score: 74
Period size: 30 Copynumber: 2.5 Consensus size: 27
6705276 ACTCTTCAAA
*
6705286 ATTTTAAAATTTAATCCCTATACTTAT
1 ATTTTAAAATTTAGTCCCTATACTTAT
* *
6705313 ATTTTTAAGAATTTAGTGCCTATACTTTTT
1 A-TTTTAA-AATTTAGTCCCTATAC-TTAT
6705343 AGTTTTCAAAATTTAG
1 A-TTTT-AAAATTTAG
6705359 GTCCAATTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
27 1 0.03
28 6 0.16
29 14 0.37
30 15 0.39
31 2 0.05
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (27 bp):
ATTTTAAAATTTAGTCCCTATACTTAT
Found at i:6708347 original size:414 final size:415
Alignment explanation
Indices: 6707402--6708504 Score: 1274
Period size: 414 Copynumber: 2.7 Consensus size: 415
6707392 CCTCAAAACA
* * * * * *
6707402 TTTCTGACTTTACCCAAATATATATAATATATTTTTTCACAATAACCATTATAGAGAGGGTCTAC
1 TTTCTAACTTTACCCCAATAAAGATAATATTTTTTTTCACAATAACCATTACAGAGAGGGTCTAC
*
6707467 TCATTTGTATATGTAACCCCTAAAAAGTTACATCACTTTGTTTGTCTTTTAAATATTAAAATCTA
66 TCATTTGTATATGTAACCCCTAAAAAGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTA
* * * *
6707532 GACTTAAATTTTACC--------AG--ATAATACCACATTTATTGATTTCAGTTTCACTTGGATT
131 GACTTAAATTTTACCAAATGTTTAGAAATAATCCCAAATTTATTGATTTCGGTTTCACTTGAATT
* *
6707587 ATAGTCTTTTTTTCTTTAGAAAAAAAATTAGGTTCAAACGTAAAGATAAGTGAA-TTTTTTATTA
196 ATAG--TTTTTTTCTTTAGAAAAAAAATTAGGTTCGAATGTAAAGATAAGTGAATTTTTTTATTA
* * *
6707651 TAGTAGCAGGGGC--C----CCCTCGGCTCCCCTAAAATGAAAAAAAATTCTATTTAGGCCCTTT
259 TAGTACCAGGGGCTGCAGGGCCCTCGACTCCCCTAAAATGAAAAAAAATTCTATTTAAGCCCTTT
* * *
6707710 AATTTTTTTTAAAAATTTTAAATTAGTAAATGTCAAATTACACTTTAGCCCTCTAAAAATGATAA
324 AATTTTTTTTAAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTAGCCCCCTAAAAATGATAA
* *
6707775 AAATTTGATTTAATCATTTAAATTTTT
389 AAAATCGATTTAATCATTTAAATTTTT
* * * *
6707802 TTTCTAACTTTACCCCAAT-ATG-TATATAATTTATATTTTCATAATAACCATTTCAGAGAGGAT
1 TTTCTAACTTTACCCCAATAAAGATA-AT-ATTT-T-TTTTCACAATAACCATTACAGAGAGGGT
* * *
6707865 CTACTCATTTGTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTATCTTTTAAATATCGAAA
62 CTACTCATTTGTATATGTAACCCCTAAAAAGTTACATCACTTTGTTTGTCTTTTAAATATTGAAA
*
6707930 TCTACACTTAAATTTTACCAAATGGTTTTAGAAAAATAATCCCAAATTTATTGATTTCGGTTTCA
127 TCTAGACTTAAATTTTACCAAAT-G-TTTAG--AAATAATCCCAAATTTATTGATTTCGGTTTCA
* * * *
6707995 CTTGAATTATA-TTTTTTTCTTTAG-AAAAAAATCAAGTTTGAATGTAAAAATAAGTGAATTTTT
188 CTTGAATTATAGTTTTTTTCTTTAGAAAAAAAATTAGGTTCGAATGTAAAGATAAGTGAATTTTT
* * **
6708058 TTATTATAGTACCAGGGGCTAGCAGGGCCCT-GACTCCTCTAAAATG-GAAAATTTTCTATTTAA
253 TTATTATAGTACCAGGGGCT-GCAGGGCCCTCGACTCCCCTAAAATGAAAAAAAATTCTATTTAA
* * *
6708121 TCCCTTTAA-TTTTTTT-AAAA-TTTAAATTAGTAAAGGTAAAATTTCACTTTGATCCCCCTAAA
317 GCCCTTTAATTTTTTTTAAAAATTTTAAATTAGTAAAGGTAAAATTACACTTT-AGCCCCCTAAA
* *
6708183 AATGATAAAAAATCGATTTAATC-TTTTATTTTTT
381 AATGATAAAAAATCGATTTAATCATTTAAATTTTT
* * * * *
6708217 TTTCTAACTTTACCCCAATAAAGATAATATGTTTTTTTCACAATAATCATTGCATATAGGGTCCA
1 TTTCTAACTTTACCCCAATAAAGATAATAT-TTTTTTTCACAATAACCATTACAGAGAGGGTCTA
* * * *
6708282 CTCGTTTGTATATGTAACCCCTAAAATGTTACATCACTTTATTTGTATTTTAAATATTGAAATCT
65 CTCATTTGTATATGTAACCCCTAAAAAGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCT
* * *
6708347 AGACTTAAATTTTACCAAATGATTCGT-GACAGATAATCCTAATTTTATTGATTCCGGTTTCACT
130 AGACTTAAATTTTACCAAATG-TT--TAGA-A-ATAATCCCAAATTTATTGATTTCGGTTTCACT
* **
6708411 T-AGATTATAGTTTTTTTACATTAGAAAAAAAAATTAGGTTCGAATGTAAAGATAAGTGGGTTTT
190 TGA-ATTATAGTTTTTTT-CTTTAG-AAAAAAAATTAGGTTCGAATGTAAAGATAAGT-GAATTT
6708475 TTTTATTATAGTAGCCAGGGGCTGGCAGGG
251 TTTTATTATAGTA-CCAGGGGCT-GCAGGG
6708505 GCCCCGGCTA
Statistics
Matches: 593, Mismatches: 69, Indels: 62
0.82 0.10 0.09
Matches are distributed among these distances:
398 2 0.00
399 2 0.00
400 20 0.03
401 1 0.00
402 103 0.17
412 31 0.05
413 40 0.07
414 139 0.23
415 66 0.11
416 83 0.14
417 9 0.02
418 48 0.08
419 30 0.05
420 19 0.03
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (415 bp):
TTTCTAACTTTACCCCAATAAAGATAATATTTTTTTTCACAATAACCATTACAGAGAGGGTCTAC
TCATTTGTATATGTAACCCCTAAAAAGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTA
GACTTAAATTTTACCAAATGTTTAGAAATAATCCCAAATTTATTGATTTCGGTTTCACTTGAATT
ATAGTTTTTTTCTTTAGAAAAAAAATTAGGTTCGAATGTAAAGATAAGTGAATTTTTTTATTATA
GTACCAGGGGCTGCAGGGCCCTCGACTCCCCTAAAATGAAAAAAAATTCTATTTAAGCCCTTTAA
TTTTTTTTAAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTAGCCCCCTAAAAATGATAAAA
AATCGATTTAATCATTTAAATTTTT
Found at i:6708700 original size:10 final size:10
Alignment explanation
Indices: 6708674--6708713 Score: 57
Period size: 11 Copynumber: 4.1 Consensus size: 10
6708664 ACCAAAATTT
6708674 TATTTTAAAA
1 TATTTTAAAA
6708684 -A-TTTAAAA
1 TATTTTAAAA
6708692 TATTTTAAAAA
1 TATTTT-AAAA
6708703 TATTTTAAAA
1 TATTTTAAAA
6708713 T
1 T
6708714 TAAAAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 7 0.26
9 2 0.07
10 8 0.30
11 10 0.37
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATTTTAAAA
Found at i:6708725 original size:16 final size:17
Alignment explanation
Indices: 6708696--6708731 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
6708686 TTAAAATATT
*
6708696 TTAAAAATATTTTAAAA
1 TTAAAAATAATTTAAAA
6708713 TTAAAAA-AATTTAAAA
1 TTAAAAATAATTTAAAA
6708729 TTA
1 TTA
6708732 TAATACATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATAATTTAAAA
Found at i:6710249 original size:423 final size:420
Alignment explanation
Indices: 6708919--6710371 Score: 2147
Period size: 416 Copynumber: 3.5 Consensus size: 420
6708909 NNNNNTACTT
*
6708919 GTTTGTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGA
1 GTTTGTATATATAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGA
* * * *
6708984 CTTAAATTTTACCAAATGATTCCAGACAAATAATCTCAAATTTATTGATTCCGGTTTCACTTGGA
66 CTTAAATTTTACCAAATGATTCCTGACAGATAATCCCAAATTTATTGATTTCGGTTTCACTTGGA
* * *
6709049 TTTTATTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAATGAATTTTTTATTAT
131 TTATAGTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAATTTTTTATTAT
* * * *
6709114 AATAGCCAGGGGCTGGTAGAGG-CCTCGACTCCCCTAAAAT-AAAAAATTTTCTATTTAGGCCAT
196 AGTAGCCAGGGGCTGGCAGAGGCCCT-GACTCCCTTAAAATGAAAAAATTTTCTATTTAGGCCCT
* * *
6709177 TTAA-TTTTTTTAAAATTTTAAATTTGTAAA-AGTAAAATTACACTTTGGCCCCTTAAAAATTAT
260 TTAATTTTTTTTAAAATTTTAAATTAGTAAAGA-TAAAATTACACTTTGGCCCCCTAAAAATGAT
* * * *
6709240 AAAAATTCGAGTTAATCCTTTAAATTTCTTTTCTAACTTTACCCCAATATATATAATATATACTT
324 AAAAATTTGATTTAATCCTTTAAAATTCTTTTCTAACTTTACCCCAATATATATAATATATATTT
6709305 TTCACAATAACCATTACAGAGAGGGTCCACTC
389 TTCACAATAACCATTACAGAGAGGGTCCACTC
6709337 GTTTGTATATATAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAA-ATTTGAAATCTAG
1 GTTTGTATATATAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATA-TTGAAATCTAG
** * *
6709401 ACTTAAATTTTACCAAATGATTTGTGATAGATAATCCAAAATTTATTGATTTCGGTTTCACTTGG
65 ACTTAAATTTTACCAAATGATTCCTGACAGATAATCCCAAATTTATTGATTTCGGTTTCACTTGG
* * *
6709466 ATTATAGTTTTTTTTCCTTAGAAAAAAATTAGGCTCGAATGTAAAGATAAGTGAATTTTTTATTA
130 ATTATAGTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAATTTTTTATTA
* * * * * *
6709531 TAGTAGCCTGGGGCTGGCAGGGGCCCTGGCTCTCTTAAAATG----ATTTTTTTATTTAGGCCCT
195 TAGTAGCCAGGGGCTGGCAGAGGCCCTGACTCCCTTAAAATGAAAAAATTTTCTATTTAGGCCCT
* *
6709592 TTAATTTTTTTTAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTGGCCCCCTAAAAGTGATA
260 TTAATTTTTTTTAAAATTTTAAATTAGTAAAGATAAAATTACACTTTGGCCCCCTAAAAATGATA
* *
6709657 AAAATTTGATTTAATCTTTTAAAATTCTTTTCTAACTTTACCCCAATGTATATAATATATATTTT
325 AAAATTTGATTTAATCCTTTAAAATTCTTTTCTAACTTTACCCCAATATATATAATATATATTTT
* *
6709722 TCACAATAACCATCACAGAGAGGGTCTACTC
390 TCACAATAACCATTACAGAGAGGGTCCACTC
6709753 GTTTGTATATATAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGA
1 GTTTGTATATATAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGA
* * * **
6709818 CTTAAATTTTACTAAATTATTCCTGACAGATAATCCCAATTTTATTGATTTCTATTTCACTTGGA
66 CTTAAATTTTACCAAATGATTCCTGACAGATAATCCCAAATTTATTGATTTCGGTTTCACTTGGA
* * * * * *
6709883 TTATAATTATTTTTATTTAG-AAAAAATTAGGTTTGAATGTAATGATAAGTGAATTTTTTTTATT
131 TTATAGTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAA--TTTTTTATT
* * **
6709947 ATAGTAGTCAGGGGCTGACAGAGGCCCTGACTCCCTTAAAATGAAAAAAAATTCTATTTAGGCCC
194 ATAGTAGCCAGGGGCTGGCAGAGGCCCTGACTCCCTTAAAATGAAAAAATTTTCTATTTAGGCCC
* * *
6710012 TTTAATTTTTTTTGAAATTTTAAATTAGTAAAGATAAAAGTACACTTTGACCCCCTAAAAATGAT
259 TTTAATTTTTTTTAAAATTTTAAATTAGTAAAGATAAAATTACACTTTGGCCCCCTAAAAATGAT
*
6710077 AAAAATTTGATTTAGTCCTTTAAAATTCTTTTCTAACTTTACCCCAATATATATATCATATATAT
324 AAAAATTTGATTTAATCCTTTAAAATTCTTTTCTAACTTTACCCCAATATATATA--ATATATAT
*
6710142 TTTTCACAATAACCATTATAGAGAGGGTCCACTC
387 TTTTCACAATAACCATTACAGAGAGGGTCCACTC
* *
6710176 GTTTGTATATGTAACCCCTAAAATGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGA
1 GTTTGTATATATAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGA
* * * * *
6710241 CTTAAATTTTACCAAATGATTCCTGAGAGACAATCTCAAATTTATTGATTTTGGTTTCACTTGAA
66 CTTAAATTTTACCAAATGATTCCTGACAGATAATCCCAAATTTATTGATTTCGGTTTCACTTGGA
*
6710306 TTATAG-TTTTTTTCTTTA-AAAAATAATCAGGTTCGAATGTAAAAATAAGTGAAATTTTTTATT
131 TTATAGTTTTTTTTCTTTAGAAAAA-AATCAGGTTCGAATGTAAAGATAAGTG-AATTTTTTATT
6710369 ATA
194 ATA
6710372 AGTTTTAAAA
Statistics
Matches: 924, Mismatches: 94, Indels: 30
0.88 0.09 0.03
Matches are distributed among these distances:
415 50 0.05
416 277 0.30
417 48 0.05
418 207 0.22
419 3 0.00
421 126 0.14
422 26 0.03
423 185 0.20
424 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (420 bp):
GTTTGTATATATAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGA
CTTAAATTTTACCAAATGATTCCTGACAGATAATCCCAAATTTATTGATTTCGGTTTCACTTGGA
TTATAGTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAATTTTTTATTAT
AGTAGCCAGGGGCTGGCAGAGGCCCTGACTCCCTTAAAATGAAAAAATTTTCTATTTAGGCCCTT
TAATTTTTTTTAAAATTTTAAATTAGTAAAGATAAAATTACACTTTGGCCCCCTAAAAATGATAA
AAATTTGATTTAATCCTTTAAAATTCTTTTCTAACTTTACCCCAATATATATAATATATATTTTT
CACAATAACCATTACAGAGAGGGTCCACTC
Found at i:6711767 original size:30 final size:30
Alignment explanation
Indices: 6711733--6711795 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
6711723 ACTTATTTTA
6711733 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
6711763 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
6711793 TTG
1 TTG
6711796 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:6713199 original size:414 final size:415
Alignment explanation
Indices: 6712357--6713866 Score: 2031
Period size: 414 Copynumber: 3.6 Consensus size: 415
6712347 AAAATTTTTG
* * *
6712357 ACTTTACCCAAATATATATAATATATATTTTCATAATAACCATTATAGAGAGGGTCTACTCGTTT
1 ACTTTACCCCAATATATAT-ATATATTTTTTCACAATAACCATTATAGAGAGGGTCTACTCGTTT
* * *
6712422 GTATATGTAACCCCTAAAAAGTTACATTACTTTGTTTGTCTTTTAAATATTAAAATCTAGACTTA
65 GTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGACTTA
* *
6712487 AATTTTACCAAATGATTCCTAACAGATAATTCTAAATTTATTGATTTCGATTTCAC-TGGAATTA
130 AATTTTACCAAATGATTCCTGACAGATAATTCTAAATTTATTGATTTCGGTTTCACTTGG-ATTA
* * * *
6712551 TA-ATTTTTTTCTTTA-AAAAAAATCAAGTTCAAATATAAAGATAAGTGAATTTTTTTTATTATA
194 TAGTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTG-A-TTTTTTTATTATA
* * * *
6712614 ATAGCCAGGGGCTAGCA-CGGCCCCGGCTCCCCTAAAATGGAAAATTTTCTATTTAGGCCCTTTA
257 GTAGCCAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGCCCTTTA
* * *
6712678 ATTTTTTAAAAATTTTAAATTAGTAAAGATAAAATTGCACTTTAGTCTCCCTAAAAATGATAAAA
322 ATTTTTTAAAAATTTTAAATTAGTAAAGGTAAAATTACACTTT-GAC-CCCTAAAAATGATAAAA
* *
6712743 ATTAGATTTCATCCTTT--AATTTTTTTCTA
385 ATTAGATTTAATCCTTTAAAATTCTTTTCTA
* * * *
6712772 ACTTTAGCCCAATATAGATGATATATTTTTTCACAATAACCA-TAGCAGAGACGGTCTACTCGTT
1 ACTTTACCCCAATATATAT-ATATATTTTTTCACAATAACCATTA-TAGAGAGGGTCTACTCGTT
* * * *
6712836 TGTATATGTAACCCTTAAAAGGTTACGTCACTTTATTTGTCTTTTAAATATTGAAATCTAGAGTT
64 TGTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGACTT
* *
6712901 AAATTTTACCAAATGATTCATGACAGATAA-TCTCAATTTTATTGATTAT-GGTTTCACTTGGAT
129 AAATTTTACCAAATGATTCCTGACAGATAATTCT-AAATTTATTGATT-TCGGTTTCACTTGGAT
*
6712964 TATAG-TTTTTTT-TTT-GAAAAAAATTAGGTTCGAATGTAAAGATAAGTGAGTTTTTTTATTAT
192 TATAGTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGA-TTTTTTTATTAT
* * * * *
6713026 AGTAACAAGGGGCGGGCAGGGGCCCCGGCTCCCCTAAAATGAAAAATTTTTTGTTTAGGCCCTTT
256 AGTAGCCAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGCCCTTT
* * * *
6713091 AATGTTTTAAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTGGCCCCTTAAAATGGTAAAAA
321 AATTTTTTAAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTGACCCCTAAAAATGATAAAAA
* *
6713156 TTTGATTTAATCCTTTAAAAATCTTTTCTA
386 TTAGATTTAATCCTTTAAAATTCTTTTCTA
* * * *
6713186 ACTTTACCCCAATATATATATAATATTTTTTCACAATAACCTTTGTAGAGAGGGTGTACTTGTTT
1 ACTTTACCCCAATATATATAT-ATATTTTTTCACAATAACCATTATAGAGAGGGTCTACTCGTTT
* *
6713251 GTATATGTAACCCCTAAAAGGTTACATCATTTTGTTTGTCTTTTAAATATT-AAAGTTTAGACTT
65 GTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAA-TCTAGACTT
* * * * *
6713315 AAATTTTATCAAATTATTCCTGATAGATAATCCTAAATTTATTGATTTCGGTTTCACTTGTATTA
129 AAATTTTACCAAATGATTCCTGACAGATAATTCTAAATTTATTGATTTCGGTTTCACTTGGATTA
* * *
6713380 TAGTTTTTTTTATTTTATTTAGAAAAGAATCAGGTTCTAATGTAAAGATAAGTGATTTTTTTATT
194 TAG----TTTT-TTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGATTTTTTTATT
* * * * *
6713445 ATAGCAGCCAGGGGCTGGTAGGGGCCCCGACTCTCCTAAAATAAAAAATTTTCTATTTAGGCCCT
254 ATAGTAGCCAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGCCCT
* * * *
6713510 CTAATTTTTTTAATATTTTAAATTAGTAAAGGTAAAATTACACTTTAACCACCTAAAAATGATAA
319 TTAATTTTTTAAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTGACC-CCTAAAAATGATAA
* *
6713575 AAATTCGATTTAATTCTTTAAAATTCTTTTCTA
383 AAATTAGATTTAATCCTTTAAAATTCTTTTCTA
* *
6713608 ACTTTACCCCAATATATATATCATATATATTTTTCACAATAACCATTATAGAAAGGGTCCACTCG
1 ACTTTACCCC-A-ATATATAT-ATATAT-TTTTTCACAATAACCATTATAGAGAGGGTCTACTCG
* *
6713673 TTTGTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTATCTTTTAAATATTGAAATCTAAAC
62 TTTGTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGAC
* * *
6713738 TTAAATTTTACCAAATGATTCCTGACAGATAATTCCAAATTGATTGATTTAGGTTTCACTTGGAT
127 TTAAATTTTACCAAATGATTCCTGACAGATAATTCTAAATTTATTGATTTCGGTTTCACTTGGAT
*
6713803 TATAGTTTTTTTTCTTTAGAAAAAAATCATGTTCGAATGTAAAGATAAGTGA-TTTTTTATTATA
192 TATAGTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGATTTTTTTATTATA
6713867 AGTTTCAATA
Statistics
Matches: 957, Mismatches: 110, Indels: 52
0.86 0.10 0.05
Matches are distributed among these distances:
412 30 0.03
413 34 0.04
414 291 0.30
415 174 0.18
416 4 0.00
419 15 0.02
420 43 0.04
421 116 0.12
422 83 0.09
423 1 0.00
424 12 0.01
425 151 0.16
426 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (415 bp):
ACTTTACCCCAATATATATATATATTTTTTCACAATAACCATTATAGAGAGGGTCTACTCGTTTG
TATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGACTTAA
ATTTTACCAAATGATTCCTGACAGATAATTCTAAATTTATTGATTTCGGTTTCACTTGGATTATA
GTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGATTTTTTTATTATAGTAG
CCAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGCCCTTTAATTT
TTTAAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTGACCCCTAAAAATGATAAAAATTAGA
TTTAATCCTTTAAAATTCTTTTCTA
Found at i:6716225 original size:413 final size:415
Alignment explanation
Indices: 6715147--6717666 Score: 2826
Period size: 413 Copynumber: 6.0 Consensus size: 415
6715137 AAAAATTTTG
* * * * * * *
6715147 ACTTTACCCAAATATATATAATATATTTTTTTCACAATAAACACTGTAGAGAGGGTCTATTCGTT
1 ACTTTACCCCAATATATAT-ATATA--TTTTTCACAATAACCATTATAGAGATGGTCCACTCGTT
* * *
6715212 TGTATATTTAAACCCTAAAAGGTTACATCATTTTGTTTGTCTTTTAAATATT-AAAGTCTAGACT
63 TGTATATGTAACCCCTAAAAGGTTA-ATCACTTTGTTTGTCTTTTAAATATTGAAA-TCTAGACT
6715276 TAAATTTTACCAAATGATTCCTGACAGATAATC-CTAAATTTATTGATTCCGGTTTCACTTGGAT
126 TAAATTTTACCAAATGATTCCTGACAGATAATCTC-AAATTTATTGATTCCGGTTTCACTTGGAT
* * * * * *
6715340 TATAGTTTTTTTTTCTTTAGAAAAAAATTAGGTTCAAATATAAAGATAAG-CAGGTTCTTTATTA
190 TATAGTTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGA-ATTTTTTATTA
* * *
6715404 TAGTAGTC-AGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGTCCT
254 TAGTAGACAAGGGGCTGGCAAGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGCCCT
* * ** *
6715468 TTATTTTTTTAAAATTTTAAATTAGTAAAGGTAAATTTGTACTTTGCCACC-TAAAAATGATAAA
319 TTAATTTTTTAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTGCCCCCTTAAAAATGATAAA
* *
6715532 AATTCAATTTAATCTTTTAAAATTCTTTTCTA
384 AATTTAATTTAATCCTTTAAAATTCTTTTCTA
* * *
6715564 ACTTTACCCCAATATATATA-ATATTTTTCACAATAATCATTACAGAGATGGTTCACTCGTTTGT
1 ACTTTACCCCAATATATATATATATTTTTCACAATAACCATTATAGAGATGGTCCACTCGTTTGT
* *
6715628 ATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGACATAAT
66 ATATGTAACCCCTAAAAGGTTA-ATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGACTTAAA
* * * *
6715693 TTTTACCAAATGATTCTTGACAGATAATATCAAATTTATTGATTCCAGTTTCACTTGAATTATAG
130 TTTTACCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCGGTTTCACTTGGATTATAG
* * * * *
6715758 TTTTTTCCTT-TTTAGAATAAAATTAGGTTCGAATGTAAAAATAAGTGGATTTTTTATTATAGTA
195 TTTTTT-TTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAATTTTTTATTATAGTA
* * * * *
6715822 GTC-AGGGGCTGGTAGGGGCCCCGGCTCCCTTAAAATGGAAAATTTTCTATTTAGGCCCTTTAAT
259 GACAAGGGGCTGGCAAGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGCCCTTTAAT
* *
6715886 TTTTGTAAAATTTTAAATTAGTAAAGGTAAAATTATACTTTAACCCCCTTAAAAATGATAAAAAT
324 TTTT-TAAAATTTTAAATTAGTAAAGGTAAAATTACACTTT-GCCCCCTTAAAAATGATAAAAAT
6715951 TTAATTTAATCCTTTAAAATTCTTTTCTA
387 TTAATTTAATCCTTTAAAATTCTTTTCTA
* * *
6715980 GCTTTACCCCAATATATATAATATATTTTTCACAATAACCATTATAGAGTTGGTCCACTTGTTTG
1 ACTTTACCCCAATATATAT-ATATATTTTTCACAATAACCATTATAGAGATGGTCCACTCGTTTG
*
6716045 TATATGTAACCCCTAAAAGGTT-A-CGCTTTGTTTGTCTTTTAAATATTGAAATCTAGACTTAAA
65 TATATGTAACCCCTAAAAGGTTAATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGACTTAAA
* * *
6716108 TTTTATCAAATGATTCCTCACAGATAATCTCAAATTTATTGATTCCGGTTTCACTTGAATTATAG
130 TTTTACCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCGGTTTCACTTGGATTATAG
*
6716173 -TTTTTTTT-TTTAGAAAAAAATCAGGTTCGAATGTTAAGATAAGTGAATTTTTTTTTATTATAG
195 TTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAA---TTTTTTATTATAG
* * * * * * * ** *
6716236 TAG-CCAGGGGTTGGCAGGGGGCCTGAC-ACCCTCAAAATAGAAAAAAATTCTATTTAGGACCTT
257 TAGACAAGGGGCTGGCAAGGGCCCCGGCTCCCCT-AAAAT-GAAAAATTTTCTATTTAGGCCCTT
* * *
6716299 TAATTTTTTTTAAAATTTTAAATTAATAAAAGTAAAATTACACTTTGCCCCCTTAAAATTGATAA
320 TAA--TTTTTTAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTGCCCCCTTAAAAATGATAA
* ** *
6716364 AAATTCAATTTAATCCTTTAATTTTTTTTTCTA
383 AAATTTAATTTAATCCTTTAAAATTCTTTTCTA
* * * *
6716397 ACTCTATCCCAATATATATAATATATAATTTTCACAATAACCATTATAGAGAGGGTTCACTCGTT
1 ACTTTACCCCAATATATAT-ATATAT--TTTTCACAATAACCATTATAGAGATGGTCCACTCGTT
* * **
6716462 TGTATATGTAAACCCTAAAAGGTTACATTACTTTGTTCATCTTTTAAATATTGAAATCTAGACTT
63 TGTATATGTAACCCCTAAAAGGTTA-ATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGACTT
* * * * **
6716527 CAATTTTACCAAATGATTCATGAGAGATGATCTCAAATTTATTGATTTTGGTTTCACTTGGATTA
127 AAATTTTACCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCGGTTTCACTTGGATTA
* *
6716592 TAGTTTTTTTTTTCTTTAG-AAAAAATCAGGTTCTAATGTAAAGATAAGTGAATTTTTTATTGTA
192 TAG-TTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAATTTTTTATTATA
* * * * * * *
6716656 GTAG-CTAGGGGCTGGCAAAGGCCCCGACTCTCTTAAAATGGAAAATTTTTTATTTAGGCCCTTT
256 GTAGACAAGGGGCTGGCAAGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGCCCTTT
* * * *
6716720 AATTTTTTTAAATTTTACATTAGTAAAGGTAAAATTGCACTTTGGCCCCCCTAAAAATGATAAAA
321 AATTTTTTAAAATTTTAAATTAGTAAAGGTAAAATTACACTTT-GCCCCCTTAAAAATGATAAAA
* * *
6716785 ATTTGAA-TTAATCCTTCAAATTTCTCTTCTA
385 ATTT-AATTTAATCCTTTAAAATTCTTTTCTA
* * *
6716816 ACTTTA-CCC----TA-ATATATATTTTTCACAAAAACCATTATAGAAATGGTCCACTCATTTGT
1 ACTTTACCCCAATATATATATATATTTTTCACAATAACCATTATAGAGATGGTCCACTCGTTTGT
* *
6716875 ATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGCCTTTTAAAT-CTGTAAATCTAGACTTAA
66 ATATGTAACCCCTAAAAGGTTA-ATCACTTTGTTTGTCTTTTAAATATTG-AAATCTAGACTTAA
* * * *
6716939 ATTTTACCAAATAATTCTTGAGAGATAATCTCAAATTTATTGATTTCGGTTTCACTTGGATTATA
129 ATTTTACCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCGGTTTCACTTGGATTATA
*
6717004 GTTTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAAATAAGTGAATTTTTTTATTATAA
194 G-TTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAA-TTTTTTATTAT-A
* * * *
6717069 GTTTCA-ACAATGGGGTATCCAGCGGGCTAACAGGGCCCCAGCTCCCCTAAAATGTAAAGTTTTC
256 G--T-AGACAA--GGG------GCTGGC--A-AGGGCCCCGGCTCCCCTAAAATGAAAAATTTTC
* ** * * *
6717133 TATTTAGGCCCTTTAATGTTTTAATGTTTTAAAAATTTTACCCTAAAATGTCAAATTACACTTTG
307 TATTTAGGCCCTTTAATTTTTTAAAATTTT--AAA--TTA--GT-AAAGGTAAAATTACACTTT-
* * * * *
6717198 GCCCCCCTAAAAATAATAAAAATTTGAA-TTAATCCTTCAAATTTCTCTTCTA
364 GCCCCCTTAAAAATGATAAAAATTT-AATTTAATCCTTTAAAATTCTTTTCTA
* * *
6717250 ACTTTA-CCC----TA-ATATATATTTTTCACAATAACCATTACAGAAATGGTCCACTCATTTGT
1 ACTTTACCCCAATATATATATATATTTTTCACAATAACCATTATAGAGATGGTCCACTCGTTTGT
*
6717309 ATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGCCTTTTAAAT-TTGTAAATCTAGACTTAA
66 ATATGTAACCCCTAAAAGGTTA-ATCACTTTGTTTGTCTTTTAAATATTG-AAATCTAGACTTAA
* * *
6717373 ATTTTACCAAATAATTCCTGAGAGATAATCTCAAATTTATTGATTTCGGTTTCACTTGGATTATA
129 ATTTTACCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCGGTTTCACTTGGATTATA
*
6717438 -ATTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAATTTTTTATTATAAGT
194 GTTTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAATTTTTTATTAT-AG-
* * * *
6717502 TTCA-ACAATGGGGTATCCAGCGGGCTAACAGGGCCCCAGCTCCCCTAAAATGTAAAGTTTTCTA
257 -T-AGACAA--GGG------GCTGGC--A-AGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTA
* *
6717566 TTTAGGCCCTTTAATGTTTTAAAAATTTTAAATTAGTAAAGGTAAATTTACACTTTAGCCCCCTT
309 TTTAGGCCCTTTAAT-TTTTTAAAATTTTAAATTAGTAAAGGTAAAATTACACTTT-GCCCCCTT
* * *
6717631 -AAAATAATAAAAATTTACTTTAATTCTTTGAAAATT
372 AAAAATGATAAAAATTTAATTTAATCCTTT-AAAATT
6717667 ATAAAAATAT
Statistics
Matches: 1858, Mismatches: 188, Indels: 106
0.86 0.09 0.05
Matches are distributed among these distances:
409 2 0.00
410 167 0.09
411 31 0.02
412 16 0.01
413 302 0.16
414 47 0.03
415 109 0.06
416 104 0.06
417 111 0.06
418 135 0.07
419 108 0.06
420 24 0.01
421 39 0.02
422 94 0.05
423 1 0.00
424 68 0.04
425 33 0.02
426 2 0.00
427 51 0.03
428 3 0.00
429 2 0.00
430 3 0.00
431 97 0.05
432 56 0.03
433 1 0.00
434 252 0.14
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (415 bp):
ACTTTACCCCAATATATATATATATTTTTCACAATAACCATTATAGAGATGGTCCACTCGTTTGT
ATATGTAACCCCTAAAAGGTTAATCACTTTGTTTGTCTTTTAAATATTGAAATCTAGACTTAAAT
TTTACCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCGGTTTCACTTGGATTATAGT
TTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGAATTTTTTATTATAGTAGA
CAAGGGGCTGGCAAGGGCCCCGGCTCCCCTAAAATGAAAAATTTTCTATTTAGGCCCTTTAATTT
TTTAAAATTTTAAATTAGTAAAGGTAAAATTACACTTTGCCCCCTTAAAAATGATAAAAATTTAA
TTTAATCCTTTAAAATTCTTTTCTA
Found at i:6718422 original size:225 final size:225
Alignment explanation
Indices: 6718031--6718924 Score: 1752
Period size: 225 Copynumber: 4.0 Consensus size: 225
6718021 TTTTAAAGGT
*
6718031 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCAAATTAATCATTCAAATTTCTCTTCTA
1 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
6718096 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
66 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
6718161 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
131 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
6718226 CAAATGATTCCTGAGAGATAATCTTAATAA
196 CAAATGATTCCTGAGAGATAATCTTAATAA
6718256 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
1 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
6718321 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
66 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
6718386 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
131 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
6718451 CAAATGATTCCTGAGAGATAATCTTAATAA
196 CAAATGATTCCTGAGAGATAATCTTAATAA
6718481 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
1 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
6718546 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
66 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
6718611 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
131 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
6718676 CAAATGATTCCTGAGAGATAATCTTAATAA
196 CAAATGATTCCTGAGAGATAATCTTAATAA
6718706 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
1 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
6718771 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
66 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
*
6718836 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAC
131 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
* *
6718901 CAAATAATTCTTGAGAGATAATCT
196 CAAATGATTCCTGAGAGATAATCT
6718925 CAAATTTATT
Statistics
Matches: 665, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
225 665 1.00
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (225 bp):
AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
CAAATGATTCCTGAGAGATAATCTTAATAA
Found at i:6719937 original size:225 final size:225
Alignment explanation
Indices: 6719546--6720217 Score: 1326
Period size: 225 Copynumber: 3.0 Consensus size: 225
6719536 TTTTAAAGGT
*
6719546 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCAAATTAATCATTCAAATTTCTCTTCTA
1 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
6719611 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
66 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
6719676 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
131 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
6719741 CAAATGATTCCTGAGAGATAATCTTAATAA
196 CAAATGATTCCTGAGAGATAATCTTAATAA
6719771 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
1 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
6719836 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
66 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
6719901 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
131 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
6719966 CAAATGATTCCTGAGAGATAATCTTAATAA
196 CAAATGATTCCTGAGAGATAATCTTAATAA
6719996 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
1 AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
6720061 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
66 ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
*
6720126 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAC
131 AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
6720191 CAAATGATTCCTGAGAGATAATCTTAA
196 CAAATGATTCCTGAGAGATAATCTTAA
6720218 ATTTATTGAT
Statistics
Matches: 445, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
225 445 1.00
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (225 bp):
AAAATTGCAATTTGGCCCCCTAAAAATGATAAAAATTCGAATTAATCATTCAAATTTCTCTTCTA
ACTTTACCCTAATATATATTTTTCACAATAACCATTACAGAAAAGGTCCACTCGTTTGTATATGT
AACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATCTGTAAATCTAGACTTAAATTTTAA
CAAATGATTCCTGAGAGATAATCTTAATAA
Found at i:6721848 original size:48 final size:48
Alignment explanation
Indices: 6721777--6721869 Score: 186
Period size: 48 Copynumber: 1.9 Consensus size: 48
6721767 GGCAGAAATT
6721777 AGTAAGAAGCACACGATTTTGGTCAAAGAAAAAAACAAGCAGCTCTTC
1 AGTAAGAAGCACACGATTTTGGTCAAAGAAAAAAACAAGCAGCTCTTC
6721825 AGTAAGAAGCACACGATTTTGGTCAAAGAAAAAAACAAGCAGCTC
1 AGTAAGAAGCACACGATTTTGGTCAAAGAAAAAAACAAGCAGCTC
6721870 ATCAATCCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.45, C:0.18, G:0.19, T:0.17
Consensus pattern (48 bp):
AGTAAGAAGCACACGATTTTGGTCAAAGAAAAAAACAAGCAGCTCTTC
Found at i:6723139 original size:12 final size:12
Alignment explanation
Indices: 6723122--6723147 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6723112 TTAAAATTAC
6723122 ATAAAAATTAAT
1 ATAAAAATTAAT
6723134 ATAAAAATTAAT
1 ATAAAAATTAAT
6723146 AT
1 AT
6723148 GGGCGGGTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAAAAATTAAT
Found at i:6724260 original size:416 final size:415
Alignment explanation
Indices: 6723532--6725040 Score: 2065
Period size: 416 Copynumber: 3.6 Consensus size: 415
6723522 AATTTCTGAG
* * * *
6723532 TTTACCCTAATATATAAAATATATATTTTCACAATAACCATTATAGAGATGGTCTACTCGTTTGT
1 TTTACCCCAATATAT-ATATATATTTTTTCACAATAACCATTATAGAGAGGGTCTACTCGTTTGT
* *
6723597 ATATGTAACCCCTAAAAAGTTACATTACTTTGTTTGTCTTTTAAATATTAAAATCTAGACTTAAA
65 ATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTAAAATCTAGACTTAAA
* *
6723662 TTTTACCAAATGATTCCTGACAGAAAATTCTAAATTTATTGATTTTGGTTTCAC-TGGAATTATA
130 TTTTACCAAATGATTCCTGACAGATAATTCTAAATTTATTGATTTAGGTTTCACTTGG-ATTATA
* * * * * * *
6723726 -ATCTTTTTTCTTTA-AAAAAAATCAAGTTCAAATATAAAGATAAGTGAATTTTTTTATTATAAT
194 GTTTTTTTTTATTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTG-ATTTTTTTATTATAGT
*
6723789 AGCCAGGGGCTAGCA-GGGCCCCGGCTCCCCTAAAATGGAAAATTTTCTATTTAGGCCCTTTAAT
258 AGCCAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAAT-GAAAATTTTCTATTTAGGCCCTTTAA-
* *
6723853 TTTTTTAAAAATTTAAATTAGTAAAGATAAAATTGCACTTTAGTCTCCCTAAAAATGATAAAAAT
321 TTTTTTAAAAATTTAAATTAGTAAAGGTAAAATTGCACTTTAGAC-CCCTAAAAATGATAAAAAT
* *
6723918 TAGATTTAATCCTTT-AATTTTTTTTCTAAC
385 TAGATTTAATCCTTTAAAATTCTTTTCTAAC
* * * * *
6723948 TTTAGCCCAATATAGATGATATATTTTTTCACAATAACCA-TAGCAGAGACGGTCTACTCGTATG
1 TTTACCCCAATATATAT-ATATATTTTTTCACAATAACCATTA-TAGAGAGGGTCTACTCGTTTG
* * * *
6724012 TATATGTAACCCTTAAAAGGTTACATCACTTTATTTGTCTTTTAAATATTGAAATCTAGAGTTAA
64 TATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTAAAATCTAGACTTAA
* *
6724077 ATTTTACCAAATGATTCATGACAGATAA-TCTCAATTTTATTGA-TTATGGTTTCACTTGGATTA
129 ATTTTACCAAATGATTCCTGACAGATAATTCT-AAATTTATTGATTTA-GGTTTCACTTGGATTA
*
6724140 TAG-TTTTTTTT-TTT-GAAAAAAATTAGGTTCGAATGTAAAGATAAGTGAGTTTTTTTATTATA
192 TAGTTTTTTTTTATTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGA-TTTTTTTATTATA
* * *
6724202 GTAACCAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAATGAAAATTTTTTTGTTTAGGCCCTTTA
256 GTAGCCAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAATGAAAA-TTTTCTATTTAGGCCCTTTA
* * * *
6724267 ATGTTTTAAAAATTTTAAATTAGTAAAGGTAAAATTGTACTTT-GGCCCCTTAAAAATGGTAAAA
320 ATTTTTTAAAAA-TTTAAATTAGTAAAGGTAAAATTGCACTTTAGACCCC-TAAAAATGATAAAA
* *
6724331 ATTTGATTTAATCCTTTAAAAGTCTTTTCTAAC
383 ATTAGATTTAATCCTTTAAAATTCTTTTCTAAC
* * * *
6724364 TTTACCCCAATATATATA-ATATTTTTTCACAATAACCTTTGTAGAGAGGGTGTACTTGTTTGTA
1 TTTACCCCAATATATATATATATTTTTTCACAATAACCATTATAGAGAGGGTCTACTCGTTTGTA
* *
6724428 TATGTAACCCCTAAAAGGTTACATCATTTTGTTTGTCTTTTAAATATTAAAATTTAGACTTAAAT
66 TATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTAAAATCTAGACTTAAAT
* * * * *
6724493 TTTATCAAATTATTCCTGACAGATAATCCTAAATTTATTGATTTCGGTTTCACTTGTATTATAGT
131 TTTACCAAATGATTCCTGACAGATAATTCTAAATTTATTGATTTAGGTTTCACTTGGATTATAG-
* *
6724558 TTTTTTTTTATTTAGAAAAGAATCAGGTTCTAATGTAAAGATAAGTGATTTTTTTATTATAGTAG
195 TTTTTTTTTATTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGATTTTTTTATTATAGTAG
* * * *
6724623 CCAGGGGCTGGTAGGGGCCCCGGCTCTCCTAAAATAAAAAATTTTCTATTGAGGCCCTTTAATTT
260 CCAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAAT-GAAAATTTTCTATTTAGGCCCTTTAATTT
* * * *
6724688 TTTAATATTTTAAATTAGTAAAGGTAAAATTACACTTTA-ACCACCTAAAAATGATAAAAATTCG
324 TTTAAAAATTTAAATTAGTAAAGGTAAAATTGCACTTTAGACC-CCTAAAAATGATAAAAATTAG
*
6724752 ATTTAATTCTTTAAAATTCTTTTCTAAC
388 ATTTAATCCTTTAAAATTCTTTTCTAAC
* *
6724780 TTTACCCCAATATATATATCATACATATTTTTCACAATAACCATTATAGAAAGGGTCCACTCGTT
1 TTTACCCCAATATATATAT-AT--AT-TTTTTCACAATAACCATTATAGAGAGGGTCTACTCGTT
* * *
6724845 TGTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTATCTTTTAAATATTGAAATCTAAACTT
62 TGTATATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTAAAATCTAGACTT
* *
6724910 AAATTTTACCAAATGATTCCTGACAGATAATTCCAAATTGATTGATTTAGGTTTCACTTGGATTA
127 AAATTTTACCAAATGATTCCTGACAGATAATTCTAAATTTATTGATTTAGGTTTCACTTGGATTA
* *
6724975 TAGTTTTTTTTTTCTTTAGAAAAAAATCATGTTCGAATGTAAAGATAAGTGATTTTTTTTATTAT
192 TAG-TTTTTTTTTATTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGA-TTTTTTTATTAT
6725040 A
255 A
6725041 AGTTTCAATA
Statistics
Matches: 963, Mismatches: 101, Indels: 52
0.86 0.09 0.05
Matches are distributed among these distances:
414 151 0.16
415 118 0.12
416 361 0.37
417 83 0.09
418 37 0.04
420 2 0.00
421 198 0.21
422 13 0.01
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.40
Consensus pattern (415 bp):
TTTACCCCAATATATATATATATTTTTTCACAATAACCATTATAGAGAGGGTCTACTCGTTTGTA
TATGTAACCCCTAAAAGGTTACATCACTTTGTTTGTCTTTTAAATATTAAAATCTAGACTTAAAT
TTTACCAAATGATTCCTGACAGATAATTCTAAATTTATTGATTTAGGTTTCACTTGGATTATAGT
TTTTTTTTATTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGATTTTTTTATTATAGTAGC
CAGGGGCTGGCAGGGGCCCCGGCTCCCCTAAAATGAAAATTTTCTATTTAGGCCCTTTAATTTTT
TAAAAATTTAAATTAGTAAAGGTAAAATTGCACTTTAGACCCCTAAAAATGATAAAAATTAGATT
TAATCCTTTAAAATTCTTTTCTAAC
Found at i:6727532 original size:415 final size:411
Alignment explanation
Indices: 6726324--6727562 Score: 1710
Period size: 416 Copynumber: 3.0 Consensus size: 411
6726314 AAAAAAATTG
* * * * *
6726324 ACTTTACCCAAATATATATAATATATTTTTTTCACAATAAACACTGTAGAGAGGGTCTACTCGTT
1 ACTTTACCCCAATATATATAATATA--TTTTTCACAATAAACATTATAGAGATGGTCCACTCGTT
* *
6726389 TGTATATTTAAACCCTAAAAGGTTACATCATTTTGTTTGTCTTTTAAATATTGAAGTCTAGACTT
64 TGTATATGTAACCCCTAAAAGGTTACA-C--TTTGTTTGTCTTTTAAATATTGAAGTCTAGACTT
* *
6726454 AAATTTTATCAAATGATTCCTGACAAATAATC-CTAAATTTATTGATTCCAGTTTCACTTGGATT
126 AAATTTTATCAAATGATTCCTGACAGATAATCTC-AAATTTATTGATTCCAGTTTCACTTGAATT
* * * *
6726518 ATAGTTTTTTTTTCTTTAGAAAAAAAGCAGGTTCAAATATAAAGATAAGTGGATTCTTTATTATA
190 ATAG-TTTTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGGATTTTTTATTATA
* * * *
6726583 GTAGTCAGGGGCTGGCAGAGGCCCCGTCTCCCCTAAAATGAAAAATTTTCTATTTAGGTCCTTTA
254 GTAGTCAGGGGCTGGCAGGGGCCCCGACTCCCATAAAATGAAAAA-TTTCTATTTAGGCCCTTTA
* * *
6726648 ATTTTTTTTAAATTTTAAATTAGTAAAGGTAAATTTGTACTTTGCCCCCCCTAAAAATGATAAAA
318 A-TTTTTTTAAATTTTAAATTAGTAAAGGTAAAATTATACTTTG-CCCCCTTAAAAATGATAAAA
*
6726713 ATTCGATTTAATCTTTTAAAATTCTTTTCTA
381 ATTCGATTTAATCCTTTAAAATTCTTTTCTA
* * *
6726744 ACTTTACCCCAATATATAT-A-ATATTTTTCACAATAATCATTACAGAGATGGTTCACTCGTTTG
1 ACTTTACCCCAATATATATAATATATTTTTCACAATAAACATTATAGAGATGGTCCACTCGTTTG
* * *
6726807 TATATGTAACCCTTAAATGGTTACATCACTTTGTTTGTCTTTTAAATATTGAAGTCTAGACATAA
66 TATATGTAACCCCTAAAAGGTT--A-CACTTTGTTTGTCTTTTAAATATTGAAGTCTAGACTTAA
* *
6726872 ATTTTACCAAATGATTCCTGACAGATAATATCAAATTTATTGATTCCAGTTTCACTTGAATTATA
128 ATTTTATCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCAGTTTCACTTGAATTATA
* * * *
6726937 GTTTTTTCTTTTTTAGAATAAAATTAGGTTCGAATGTAAAAATAAGTGGATTTTTTATTATAGTA
193 GTTTTTT-TTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGGATTTTTTATTATAGTA
* * *
6727002 GTCAGGGGCTGGTAGGGGCCCCGGCTCCCATAAAATGGAAAATTTTCTATTTAGGCCCTTTAATT
257 GTCAGGGGCTGGCAGGGGCCCCGACTCCCATAAAAT-GAAAAATTTCTATTTAGGCCCTTTAATT
* *
6727067 TTTGTAAAATTTTAAATTAGTAAAGGTAAAATTATACTTTAACCCCCTTAAAAATGATAAAAATT
321 TTT-TTAAATTTTAAATTAGTAAAGGTAAAATTATACTTT-GCCCCCTTAAAAATGATAAAAATT
*
6727132 TGATTTAATCCTTTAAAATTCTTTTCTA
384 CGATTTAATCCTTTAAAATTCTTTTCTA
* * *
6727160 ACTTTACCCCAATATATATAATATATTTTTCACAATAACCATTATAGAGTTGGTCCACTTGTTTG
1 ACTTTACCCCAATATATATAATATATTTTTCACAATAAACATTATAGAGATGGTCCACTCGTTTG
* *
6727225 TATATGTAACCCCTAAAAGGTTACGCTTTGTTTGTCTTTTAAATATTGAAATCTAGACTTAAATT
66 TATATGTAACCCCTAAAAGGTTACACTTTGTTTGTCTTTTAAATATTGAAGTCTAGACTTAAATT
* * *
6727290 TTATCAAATGATTCCTCAGAGATAATCTCAAATTTATTGATTCCGGTTTCACTTGAATTATAGTT
131 TTATCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCAGTTTCACTTGAATTATAGTT
* * *
6727355 TTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTTAAGATAAGTGAATTTTTTTTATTATAGTAGC
196 TTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGGA--TTTTTTATTATAGTAGT
* * * * * **
6727420 CAGGGGTTGGCAGGGGGCCTGACACCCTTAAAATAGAACAAAAATCTATTTAGGCCCTTTAATTT
259 CAGGGGCTGGCAGGGGCCCCGACTCCCATAAAAT-GAA-AAATTTCTATTTAGGCCCTTTAATTT
* * * *
6727485 TTTTAAATTTTAAATTAATAAAGGTAAAATTACACTTTGCCCCCTTAAAATTGATAAAAATTCAA
322 TTTTAAATTTTAAATTAGTAAAGGTAAAATTATACTTTGCCCCCTTAAAAATGATAAAAATTCGA
*
6727550 TTTAGTCCTTTAA
387 TTTAATCCTTTAA
6727563 TTTTTTTAAA
Statistics
Matches: 727, Mismatches: 79, Indels: 31
0.87 0.09 0.04
Matches are distributed among these distances:
414 36 0.05
415 149 0.20
416 426 0.59
417 32 0.04
418 63 0.09
419 3 0.00
420 18 0.02
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (411 bp):
ACTTTACCCCAATATATATAATATATTTTTCACAATAAACATTATAGAGATGGTCCACTCGTTTG
TATATGTAACCCCTAAAAGGTTACACTTTGTTTGTCTTTTAAATATTGAAGTCTAGACTTAAATT
TTATCAAATGATTCCTGACAGATAATCTCAAATTTATTGATTCCAGTTTCACTTGAATTATAGTT
TTTTTTCTTTAGAAAAAAATCAGGTTCGAATGTAAAGATAAGTGGATTTTTTATTATAGTAGTCA
GGGGCTGGCAGGGGCCCCGACTCCCATAAAATGAAAAATTTCTATTTAGGCCCTTTAATTTTTTT
AAATTTTAAATTAGTAAAGGTAAAATTATACTTTGCCCCCTTAAAAATGATAAAAATTCGATTTA
ATCCTTTAAAATTCTTTTCTA
Found at i:6728931 original size:162 final size:162
Alignment explanation
Indices: 6728686--6729033 Score: 515
Period size: 162 Copynumber: 2.1 Consensus size: 162
6728676 TTACCATATT
*
6728686 TCGTTACAAAATAGTGCATGAAAACATCGATAGAGATTACCCCAAATATGGGAAAAGAGGTATTG
1 TCGTTACAAAATAGTGCATGAAAACATCGAAAGAGATTACCCCAAATATGGGAAAAGAGGTATTG
* *
6728751 AAGTTACATTTCAAAAATTCGTTATTTCCGTACCTTCTTATA-TTAAATACTCGTGACGTGT-TT
66 AAGTTACATTTCAAAAATTCGTTATTTCCGCACCTTCTTA-AGTTAAATACTCCT-A-GTGTGTT
*
6728814 -GT-ATCTTCTTTCAATTAAACACACGTATCATACG
128 CGTGA-CTTCTTTAAATTAAACACACGTATCATACG
** *
6728848 TCGTTACAAAATAGTGCATGAAAACATCGAAAGAGATTACGTCGAATATGGGAAAAGAGGTATTG
1 TCGTTACAAAATAGTGCATGAAAACATCGAAAGAGATTACCCCAAATATGGGAAAAGAGGTATTG
*
6728913 AAGTTACATTTCAAAAATTCGTTATTTCCGCGCCTTCTTAAGTTAAATACTCCTAGTGTGTTCGT
66 AAGTTACATTTCAAAAATTCGTTATTTCCGCACCTTCTTAAGTTAAATACTCCTAGTGTGTTCGT
* **
6728978 GACTTCTTTAAATTAAACATACGTATCATATT
131 GACTTCTTTAAATTAAACACACGTATCATACG
* *
6729010 TCGTTACGAAGTAGTGCATGAAAA
1 TCGTTACAAAATAGTGCATGAAAA
6729034 ATATTATTGA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
160 4 0.02
161 4 0.02
162 160 0.95
163 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (162 bp):
TCGTTACAAAATAGTGCATGAAAACATCGAAAGAGATTACCCCAAATATGGGAAAAGAGGTATTG
AAGTTACATTTCAAAAATTCGTTATTTCCGCACCTTCTTAAGTTAAATACTCCTAGTGTGTTCGT
GACTTCTTTAAATTAAACACACGTATCATACG
Found at i:6729105 original size:20 final size:20
Alignment explanation
Indices: 6729057--6729107 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
6729047 AATTTCAGAC
* * *
6729057 ATTGATAAATATCAAAAATAC
1 ATTG-TAAATTTCAAAAAGAA
*
6729078 ATTTTAAATTTCAAAAAGAA
1 ATTGTAAATTTCAAAAAGAA
6729098 ATTGTAAATT
1 ATTGTAAATT
6729108 GCCGATAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (20 bp):
ATTGTAAATTTCAAAAAGAA
Found at i:6730643 original size:10 final size:10
Alignment explanation
Indices: 6730629--6730681 Score: 79
Period size: 10 Copynumber: 5.3 Consensus size: 10
6730619 TATACACGCA
* *
6730629 TGTGTATGTA
1 TGTGTGTGTG
6730639 TGTGTGTGTG
1 TGTGTGTGTG
6730649 TGTGTGTGTG
1 TGTGTGTGTG
6730659 TGTGTGTGTG
1 TGTGTGTGTG
*
6730669 TGTGTGTGAG
1 TGTGTGTGTG
6730679 TGT
1 TGT
6730682 ATACGAGTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 40 1.00
ACGTcount: A:0.06, C:0.00, G:0.45, T:0.49
Consensus pattern (10 bp):
TGTGTGTGTG
Found at i:6730646 original size:4 final size:4
Alignment explanation
Indices: 6730629--6730681 Score: 79
Period size: 4 Copynumber: 13.2 Consensus size: 4
6730619 TATACACGCA
* *
6730629 TGTG TATG TATG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
*
6730677 AGTG T
1 TGTG T
6730682 ATACGAGTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.06, C:0.00, G:0.45, T:0.49
Consensus pattern (4 bp):
TGTG
Found at i:6730648 original size:6 final size:6
Alignment explanation
Indices: 6730629--6730681 Score: 79
Period size: 6 Copynumber: 8.8 Consensus size: 6
6730619 TATACACGCA
* *
6730629 TGTGTA TGTATG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
*
6730677 AGTGT
1 TGTGT
6730682 ATACGAGTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.06, C:0.00, G:0.45, T:0.49
Consensus pattern (6 bp):
TGTGTG
Found at i:6733290 original size:1 final size:1
Alignment explanation
Indices: 6733284--6733316 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
6733274 AGCATAGAAC
6733284 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6733317 GCTAATTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:6735572 original size:28 final size:28
Alignment explanation
Indices: 6735532--6735588 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
6735522 GAATCTTGAA
6735532 AACATAGTTTGGATTGGATCGATAAATG
1 AACATAGTTTGGATTGGATCGATAAATG
6735560 AACATAGTTTGGATTGGATCGATAAATG
1 AACATAGTTTGGATTGGATCGATAAATG
6735588 A
1 A
6735589 TTTTCCATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (28 bp):
AACATAGTTTGGATTGGATCGATAAATG
Found at i:6740015 original size:34 final size:31
Alignment explanation
Indices: 6739972--6740036 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 31
6739962 AGGTGAATGC
*
6739972 ATATGTATATATAGATCTTTATGAAATCGGATCT
1 ATATGTATATATAGA--TGTAT-AAATCGGATCT
6740006 ATATGTATATATAGATGTATAAATCGGATCT
1 ATATGTATATATAGATGTATAAATCGGATCT
6740037 GTTGTTGAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 11 0.37
32 4 0.13
34 15 0.50
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (31 bp):
ATATGTATATATAGATGTATAAATCGGATCT
Found at i:6744709 original size:19 final size:20
Alignment explanation
Indices: 6744685--6744726 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
6744675 ACTAAAGGTA
* *
6744685 ATTAATTTTA-ATATTTTTT
1 ATTAATTGTACATATATTTT
6744704 ATTAATTGTACATATATTTT
1 ATTAATTGTACATATATTTT
6744724 ATT
1 ATT
6744727 GGTGTAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTAATTGTACATATATTTT
Found at i:6746428 original size:19 final size:17
Alignment explanation
Indices: 6746397--6746447 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
6746387 GTTGATGCTA
6746397 TTATTTATTTATTTTTGT
1 TTATTT-TTTATTTTTGT
*
6746415 TCATATTTTTTATTTTGGT
1 T--TATTTTTTATTTTTGT
6746434 TTA-TTTTTATTTTT
1 TTATTTTTTATTTTT
6746448 TTCTTTCAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 10 0.34
17 2 0.07
18 1 0.03
19 11 0.38
20 5 0.17
ACGTcount: A:0.16, C:0.02, G:0.06, T:0.76
Consensus pattern (17 bp):
TTATTTTTTATTTTTGT
Found at i:6750474 original size:9 final size:9
Alignment explanation
Indices: 6750460--6750518 Score: 66
Period size: 9 Copynumber: 6.4 Consensus size: 9
6750450 TTTAGTTAAA
6750460 AATTACCCG
1 AATTACCCG
6750469 AATTACCCG
1 AATTACCCG
*
6750478 AATTAACCG
1 AATTACCCG
6750487 AATTA-CCG
1 AATTACCCG
**
6750495 AAAAAACCCG
1 -AATTACCCG
6750505 AATTAACCCG
1 AATT-ACCCG
6750515 AATT
1 AATT
6750519 TTTTTATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
8 3 0.07
9 27 0.64
10 12 0.29
ACGTcount: A:0.42, C:0.27, G:0.10, T:0.20
Consensus pattern (9 bp):
AATTACCCG
Found at i:6752358 original size:15 final size:15
Alignment explanation
Indices: 6752338--6752377 Score: 66
Period size: 14 Copynumber: 2.8 Consensus size: 15
6752328 ATATTTCAAA
6752338 AAGAAAAAGAAAAAG
1 AAGAAAAAGAAAAAG
6752353 AAGAAAAAG-AAAAG
1 AAGAAAAAGAAAAAG
6752367 AA-AAAAAGAAA
1 AAGAAAAAGAAA
6752378 GAGAGGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.25
14 9 0.38
15 9 0.38
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAGAAAAAGAAAAAG
Found at i:6752785 original size:108 final size:109
Alignment explanation
Indices: 6752643--6752865 Score: 322
Period size: 108 Copynumber: 2.1 Consensus size: 109
6752633 GGGGCACTTG
* * *
6752643 TTTTCATCTTATTCATTTTTGTATCTTAGCAAAATTTGCTATCTTGATTAATTTGTTCATTTCAA
1 TTTTCATCTTATTCATTCTTGTATCTCAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCAA
* *
6752708 GCTTTGCTCTCAATAAAATTCCATCTTATCAATTGTGATAATCT
66 GCTTTGCTCTCAATAAAATTCCATCTCATCAATTGTAATAATCT
* * *
6752752 TTTTCATCTTATTCA-TCTTGTATCTCAGCAAAATTTGCTATCTTGATTGATTTATTTATTTCGA
1 TTTTCATCTTATTCATTCTTGTATCTCAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCAA
* * * * *
6752816 GCTTTGTTCTCAATAAATTTTCATCTCGTCCATTGTAATAATCT
66 GCTTTGCTCTCAATAAAATTCCATCTCATCAATTGTAATAATCT
6752860 TTTTCA
1 TTTTCA
6752866 AGCATTTTCC
Statistics
Matches: 101, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
108 86 0.85
109 15 0.15
ACGTcount: A:0.25, C:0.17, G:0.09, T:0.49
Consensus pattern (109 bp):
TTTTCATCTTATTCATTCTTGTATCTCAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCAA
GCTTTGCTCTCAATAAAATTCCATCTCATCAATTGTAATAATCT
Found at i:6753376 original size:24 final size:24
Alignment explanation
Indices: 6753337--6753393 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
6753327 ACGTCCCAAA
* *
6753337 ATTACAAGTGGATTGAACCTTGAAG
1 ATTAC-AGTAGATTGAACCCTGAAG
6753362 ATTACAGTAGATTGAACCCTGAAG
1 ATTACAGTAGATTGAACCCTGAAG
6753386 ATTACAGT
1 ATTACAGT
6753394 GGGGGCAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 25 0.83
25 5 0.17
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (24 bp):
ATTACAGTAGATTGAACCCTGAAG
Found at i:6753859 original size:88 final size:88
Alignment explanation
Indices: 6753708--6753895 Score: 252
Period size: 88 Copynumber: 2.1 Consensus size: 88
6753698 TTATATATTG
* * * *
6753708 TAGATCTTGTCTTCATGTACCGGCAGTGAAAGAGATCGAAAACATCAGCCTTCTCTCCCTGAGCA
1 TAGATCTTGTCTTCATGTACCGACAGTGAAAGAGATCGAAAACACCAGCCTTATCTCACTGAGCA
*
6753773 ACAGTGGAGTAGGTTAAAGATTA
66 ACAGTAGAGTAGGTTAAAGATTA
* * *
6753796 TAGATCTTGTCTTCTTGTACTGACAGTG-AAGTAGATCGAAAACACCAGCCTTATCTCATTGAGC
1 TAGATCTTGTCTTCATGTACCGACAGTGAAAG-AGATCGAAAACACCAGCCTTATCTCACTGAGC
** *
6753860 AGTAGTAGAGTAGGTTGAAGATTA
65 AACAGTAGAGTAGGTTAAAGATTA
*
6753884 TAGATCCTGTCT
1 TAGATCTTGTCT
6753896 CCCTAAATCG
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
87 3 0.03
88 84 0.97
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (88 bp):
TAGATCTTGTCTTCATGTACCGACAGTGAAAGAGATCGAAAACACCAGCCTTATCTCACTGAGCA
ACAGTAGAGTAGGTTAAAGATTA
Found at i:6754277 original size:123 final size:123
Alignment explanation
Indices: 6754058--6754280 Score: 320
Period size: 123 Copynumber: 1.8 Consensus size: 123
6754048 GATCAAATAC
* ** * * * *
6754058 AGCGAATCTTATTTCCTTGGCTTTGCAGTGGAACAGATTAAAGCTAAAGGTAGTGGATCTTGTTT
1 AGCGAATCCTATTTCCTTGGCGCTACAGTGGAACAAATTAAAGCTAAAGGTAGCGAATCTTGTTT
* * *
6754123 CCCTGGCATTGTAGTGGAATAGATTAAAGCTGAAGTGAAGCGGATTAAAGCTGAAGGT
66 CCCTGGCATTGCAGTGGAACAAATTAAAGCTGAAGTGAAGCGGATTAAAGCTGAAGGT
*
6754181 AGCGAATCCTATTTCCTTGGCGCTACAGTGGAACAAATTAAAGGTAAAGGTAGCGAATCTTGTTT
1 AGCGAATCCTATTTCCTTGGCGCTACAGTGGAACAAATTAAAGCTAAAGGTAGCGAATCTTGTTT
** *
6754246 TTCTGGCATTGCAGTGGAGCAAATTAAAGCTGAAG
66 CCCTGGCATTGCAGTGGAACAAATTAAAGCTGAAG
6754281 ACAACGAATC
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
123 86 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (123 bp):
AGCGAATCCTATTTCCTTGGCGCTACAGTGGAACAAATTAAAGCTAAAGGTAGCGAATCTTGTTT
CCCTGGCATTGCAGTGGAACAAATTAAAGCTGAAGTGAAGCGGATTAAAGCTGAAGGT
Found at i:6754684 original size:44 final size:44
Alignment explanation
Indices: 6754584--6754935 Score: 223
Period size: 44 Copynumber: 7.8 Consensus size: 44
6754574 CCATAAAAAG
* * * **
6754584 TCTTATCTCCCTAAAGTTACAGTGAAGCAGACTGAATACA-ACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-A-ATACCAA
* *
6754629 CCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAAATACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAAATACCAA
* * ** **
6754673 TCTTATCTCCCTGAAGTTGCAGTTGAGCAGATTGAAGCTATTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAAATACCAA
* * **
6754717 TCCTATCTCCTTGAAGTTGCAGTGGAGC-GGATT-AAAATGATGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTGAAAAT-ACCAA
* * * *
6754761 TCCTAT-TCCTCAGAAGTTGCAGTAGG-TC-GGATT-AAGTCCACCATAACAA
1 TCTTATCTCC-CTGAAGTTGCAGT-GGAGCAGG-TTGAA----A--ATACCAA
** *
6754810 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACGACCAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAAA-TACCAA
* * * * *
6754856 CCTTATCTCCCTAAAGTTGCAGTAGAGCAGGTTTAAGATACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAAATACCAA
* * * *
6754900 TCTTATCTCCTTGAAGTTGTAGTGCAGCAGATTGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA
6754936 GTTGTTAATC
Statistics
Matches: 242, Mismatches: 48, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
43 8 0.03
44 131 0.54
45 65 0.27
46 4 0.02
47 1 0.00
48 1 0.00
49 5 0.02
50 21 0.09
51 6 0.02
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAAATACCAA
Found at i:6754789 original size:227 final size:225
Alignment explanation
Indices: 6754357--6755071 Score: 848
Period size: 227 Copynumber: 3.1 Consensus size: 225
6754347 AGATTAAAGC
* * * * * *
6754357 CTTATCTCCCTGAAGTTGCAGTAGAGCA-AGTTGAAGA-TACCAATCTTATCTCCCTGAAGTGT-
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGA-CTGAAAACAACCAACCTTATCTCCCTGAAGT-TC
** * *
6754419 AGTGGAGCAGGTTAAAAATAAATTAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
64 AGTGGAGCAGGTTAAAAAT--ACCAATCTTATCTCCCTGAAGTTGCAGTTGAGCAGATTGAAGTT
** * * *
6754484 ACCAAGTCCTATCTCCCTAAAGTT-CTTGTGGAGCGGATTAAAACGATGAATCCTATACCTCGGA
127 ATTAA-TCCTATCTCCCTGAAGTTGC-AGTGGAGCGGATTAAAA-GATGAATCCTATACCTCAGA
* * *
6754548 AGTTGCATTAGGTCGAATTAAGTCTACCATAAAAAGT
189 AGTTGCAGTAGGTCGGATTAAGTCTACCATAACAAGT
* * *
6754585 CTTATCTCCCTAAAGTTACAGTGAAGCAGACTGAATACAACCAACCTTATCTCCCTGAAGTTACA
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAAACAACCAACCTTATCTCCCTGAAGTT-CA
* *
6754650 GTGGAGCAGGTTGAAAATACCAATCTTATCTCCCTGAAGTTGCAGTTGAGCAGATTGAAGCTATT
65 GTGGAGCAGGTTAAAAATACCAATCTTATCTCCCTGAAGTTGCAGTTGAGCAGATTGAAGTTATT
* *
6754715 AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATGATGAATCCTATTCCTCAGAAGTTG
130 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA-GATGAATCCTATACCTCAGAAGTTG
*
6754780 CAGTAGGTCGGATTAAGTCCACCATAACAAGT
194 CAGTAGGTCGGATTAAGTCTACCATAACAAGT
* * *
6754812 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACGACCAACCTTATCTCCCTAAAGTTGCA
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAAACAACCAACCTTATCTCCCTGAAGTT-CA
* * * * * *
6754877 GTAGAGCAGGTTTAAGATACCAATCTTATCTCCTTGAAGTTGTAG-TGCAGCAGATTGAAGTTGT
65 GTGGAGCAGGTTAAAAATACCAATCTTATCTCCCTGAAGTTGCAGTTG-AGCAGATTGAAGTTAT
* * ** * *
6754941 TAATCCTATCTCCCTGAAGTCGCAATGGAGTAGATTAAAACAGTGAATCCTATACCTCTGAAGTT
129 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAGA-TGAATCCTATACCTCAGAAGTT
** * *
6755006 TTAGTAGGTTGGATTGAA-TCTACCATAACGAGT
193 GCAGTAGGTCGGATT-AAGTCTACCATAACAAGT
* *
6755039 ATTATCTCCCTAAAGTTGTAGTGGAGCAGACTG
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTG
6755072 TAGATAGCGG
Statistics
Matches: 423, Mismatches: 56, Indels: 17
0.85 0.11 0.03
Matches are distributed among these distances:
226 3 0.01
227 305 0.72
228 75 0.18
229 22 0.05
230 18 0.04
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (225 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAAACAACCAACCTTATCTCCCTGAAGTTCAG
TGGAGCAGGTTAAAAATACCAATCTTATCTCCCTGAAGTTGCAGTTGAGCAGATTGAAGTTATTA
ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAGATGAATCCTATACCTCAGAAGTTGCA
GTAGGTCGGATTAAGTCTACCATAACAAGT
Found at i:6756574 original size:19 final size:17
Alignment explanation
Indices: 6756543--6756593 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
6756533 GTTGATGCTA
6756543 TTATTTATTTATTTTTGT
1 TTATTT-TTTATTTTTGT
*
6756561 TCATATTTTTTATTTTGGT
1 T--TATTTTTTATTTTTGT
6756580 TTA-TTTTTATTTTT
1 TTATTTTTTATTTTT
6756594 TTCTTTCGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 10 0.34
17 2 0.07
18 1 0.03
19 11 0.38
20 5 0.17
ACGTcount: A:0.16, C:0.02, G:0.06, T:0.76
Consensus pattern (17 bp):
TTATTTTTTATTTTTGT
Found at i:6756644 original size:12 final size:12
Alignment explanation
Indices: 6756624--6756660 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
6756614 ATTTTATTCT
6756624 TTATTGTTATTA
1 TTATTGTTATTA
*
6756636 TTGTTGTTATTA
1 TTATTGTTATTA
*
6756648 TTATTATTATTA
1 TTATTGTTATTA
6756660 T
1 T
6756661 ATTTATGTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTATTGTTATTA
Found at i:6767676 original size:27 final size:27
Alignment explanation
Indices: 6767638--6767693 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
6767628 TTCACACAGG
6767638 GAAAAAAGAAAGTTCGACGTCGCCTGA
1 GAAAAAAGAAAGTTCGACGTCGCCTGA
6767665 GAAAAAAGAAAGTTCGACGTCGCCTGA
1 GAAAAAAGAAAGTTCGACGTCGCCTGA
6767692 GA
1 GA
6767694 GATTCGAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.18, G:0.27, T:0.14
Consensus pattern (27 bp):
GAAAAAAGAAAGTTCGACGTCGCCTGA
Found at i:6769661 original size:31 final size:31
Alignment explanation
Indices: 6769626--6769686 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
6769616 TAACCTAGTG
*
6769626 ACTTAAAT-AAAGACTTTTGAATAGTTCAGTA
1 ACTTAAATGAAA-ACTTTCGAATAGTTCAGTA
*
6769657 ACTTAAATGGAAACTTTCGAATAGTTCAGT
1 ACTTAAATGAAAACTTTCGAATAGTTCAGT
6769687 GACCATTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.34
Consensus pattern (31 bp):
ACTTAAATGAAAACTTTCGAATAGTTCAGTA
Found at i:6783321 original size:16 final size:16
Alignment explanation
Indices: 6783300--6783330 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6783290 CATGATTCCG
6783300 TTAATTTTGAATTTAT
1 TTAATTTTGAATTTAT
*
6783316 TTAATTTTGTATTTA
1 TTAATTTTGAATTTA
6783331 ACTTATGGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
TTAATTTTGAATTTAT
Found at i:6784084 original size:30 final size:31
Alignment explanation
Indices: 6784026--6784084 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
6784016 CACTTGAATT
*
6784026 TTGAAATATAAAAAATAAAATGACTAAATCC
1 TTGAAATATAAAAAATAAAATGAATAAATCC
*
6784057 TTGAAAT-TAAAAAGTAAAA-GAAATAAAT
1 TTGAAATATAAAAAATAAAATG-AATAAAT
6784085 TCTAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 1 0.04
30 17 0.68
31 7 0.28
ACGTcount: A:0.61, C:0.05, G:0.08, T:0.25
Consensus pattern (31 bp):
TTGAAATATAAAAAATAAAATGAATAAATCC
Found at i:6789240 original size:30 final size:30
Alignment explanation
Indices: 6789214--6789617 Score: 342
Period size: 30 Copynumber: 13.1 Consensus size: 30
6789204 AAACATGATT
*
6789214 TGCAGTCACACGAGCTGCATTTACATGAAC
1 TGCAGTCGCACGAGCTGCATTTACATGAAC
**
6789244 TGCAGTCGCATAAACTGCTGCATTTACATGAAC
1 TGCAGTCGCA-CGA--GCTGCATTTACATGAAC
* * *
6789277 TGCAGTTGCATGAGCTGCATTTACAAGAAC
1 TGCAGTCGCACGAGCTGCATTTACATGAAC
**
6789307 TGCAGTCGCATAAACTGCTGCATTTACATGAAC
1 TGCAGTCGCA-CGA--GCTGCATTTACATGAAC
* * *
6789340 TGCAGTTGCATGAGCTGCATTTACAAGAAC
1 TGCAGTCGCACGAGCTGCATTTACATGAAC
**
6789370 TGCAGTCGCATAAACTGCTGCATTTACATGAAC
1 TGCAGTCGCA-CGA--GCTGCATTTACATGAAC
* **
6789403 TGCAGTCACATAAACTGCTGCATTTACATGAAC
1 TGCAGTCGCA-CGA--GCTGCATTTACATGAAC
* * * * * *
6789436 TACAGTCACATGAGCTGCATTTACACGGAT
1 TGCAGTCGCACGAGCTGCATTTACATGAAC
* * * *
6789466 TGCAGTTGCACGAGCTGCATTTACACGGAT
1 TGCAGTCGCACGAGCTGCATTTACATGAAC
* * *
6789496 TGCAGTCGCACGAGCTGCATTTACACGGAT
1 TGCAGTCGCACGAGCTGCATTTACATGAAC
* * *
6789526 TGCAGTTGCATGAGCTGCATTTACATGAAG
1 TGCAGTCGCACGAGCTGCATTTACATGAAC
* *
6789556 TGCAATTGCACGAGCTGCATTTACATGAA-
1 TGCAGTCGCACGAGCTGCATTTACATGAAC
* * * *
6789585 GGCAGGTCACACGAGCTGCATTTGCACGAAC
1 TGCA-GTCGCACGAGCTGCATTTACATGAAC
6789616 TG
1 TG
6789618 TGTTCCGATG
Statistics
Matches: 318, Mismatches: 45, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
29 3 0.01
30 200 0.63
31 4 0.01
32 3 0.01
33 108 0.34
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (30 bp):
TGCAGTCGCACGAGCTGCATTTACATGAAC
Found at i:6789246 original size:15 final size:15
Alignment explanation
Indices: 6789228--6789584 Score: 129
Period size: 15 Copynumber: 23.0 Consensus size: 15
6789218 GTCACACGAG
6789228 CTGCATTTACATGAA
1 CTGCATTTACATGAA
* ** *
6789243 CTGCAGTCGCATAAA
1 CTGCATTTACATGAA
6789258 CTGCTGCATTTACATGAA
1 ---CTGCATTTACATGAA
* * *
6789276 CTGCAGTTGCATGAG
1 CTGCATTTACATGAA
*
6789291 CTGCATTTACAAGAA
1 CTGCATTTACATGAA
* ** *
6789306 CTGCAGTCGCATAAA
1 CTGCATTTACATGAA
6789321 CTGCTGCATTTACATGAA
1 ---CTGCATTTACATGAA
* * *
6789339 CTGCAGTTGCATGAG
1 CTGCATTTACATGAA
*
6789354 CTGCATTTACAAGAA
1 CTGCATTTACATGAA
* ** *
6789369 CTGCAGTCGCATAAA
1 CTGCATTTACATGAA
6789384 CTGCTGCATTTACATGAA
1 ---CTGCATTTACATGAA
* * *
6789402 CTGCAGTCACATAAA
1 CTGCATTTACATGAA
6789417 CTGCTGCATTTACATGAA
1 ---CTGCATTTACATGAA
* * * *
6789435 CTACAGTCACATGAG
1 CTGCATTTACATGAA
* *
6789450 CTGCATTTACACGGA
1 CTGCATTTACATGAA
* * * * *
6789465 TTGCAGTTGCACGAG
1 CTGCATTTACATGAA
* *
6789480 CTGCATTTACACGGA
1 CTGCATTTACATGAA
* * ** * *
6789495 TTGCAGTCGCACGAG
1 CTGCATTTACATGAA
* *
6789510 CTGCATTTACACGGA
1 CTGCATTTACATGAA
* * * *
6789525 TTGCAGTTGCATGAG
1 CTGCATTTACATGAA
6789540 CTGCATTTACATGAA
1 CTGCATTTACATGAA
* * * * *
6789555 GTGCAATTGCACGAG
1 CTGCATTTACATGAA
6789570 CTGCATTTACATGAA
1 CTGCATTTACATGAA
6789585 GGCAGGTCAC
Statistics
Matches: 232, Mismatches: 98, Indels: 24
0.66 0.28 0.07
Matches are distributed among these distances:
15 187 0.81
18 45 0.19
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (15 bp):
CTGCATTTACATGAA
Found at i:6789274 original size:63 final size:60
Alignment explanation
Indices: 6789222--6789617 Score: 348
Period size: 63 Copynumber: 6.4 Consensus size: 60
6789212 TTTGCAGTCA
6789222 CACGAGCTGCATTTACATGAACTGCAGTCGCATAAACTGCTGCATTTACATGAACTGCAGTTG
1 CACGAGCTGCATTTACATGAACTGCAGTCGCATAAA--GCTGCATTTACATG-ACTGCAGTTG
* *
6789285 CATGAGCTGCATTTACAAGAACTGCAGTCGCATAAACTGCTGCATTTACATGAACTGCAGTTG
1 CACGAGCTGCATTTACATGAACTGCAGTCGCATAAA--GCTGCATTTACATG-ACTGCAGTTG
* * **
6789348 CATGAGCTGCATTTACAAGAACTGCAGTCGCATAAACTGCTGCATTTACATGAACTGCAGTCA
1 CACGAGCTGCATTTACATGAACTGCAGTCGCATAAA--GCTGCATTTACATG-ACTGCAGTTG
** * * * * *
6789411 CATAAACTGCTGCATTTACATGAACTACAGTCACAT-GAGCTGCATTTACACGGATTGCAGTTG
1 CA-CGA--GCTGCATTTACATGAACTGCAGTCGCATAAAGCTGCATTTACA-TGACTGCAGTTG
* * * ** * *
6789474 CACGAGCTGCATTTACACGGATTGCAGTCGCA-CGAGCTGCATTTACACGGATTGCAGTTG
1 CACGAGCTGCATTTACATGAACTGCAGTCGCATAAAGCTGCATTTACA-TGACTGCAGTTG
* * * * ** ** **
6789534 CATGAGCTGCATTTACATGAAGTGCAATTGCA-CGAGCTGCATTTACATGAAGGCAGGTCA
1 CACGAGCTGCATTTACATGAACTGCAGTCGCATAAAGCTGCATTTACATGACTGCA-GTTG
* *
6789594 CACGAGCTGCATTTGCACGAACTG
1 CACGAGCTGCATTTACATGAACTG
6789618 TGTTCCGATG
Statistics
Matches: 291, Mismatches: 36, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
59 5 0.02
60 112 0.38
62 1 0.00
63 145 0.50
64 2 0.01
65 1 0.00
66 25 0.09
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (60 bp):
CACGAGCTGCATTTACATGAACTGCAGTCGCATAAAGCTGCATTTACATGACTGCAGTTG
Found at i:6789446 original size:33 final size:33
Alignment explanation
Indices: 6789227--6789442 Score: 318
Period size: 33 Copynumber: 6.7 Consensus size: 33
6789217 AGTCACACGA
6789227 GCTGCATTTACATGAACTGCAGTCGCATAAACT
1 GCTGCATTTACATGAACTGCAGTCGCATAAACT
* *
6789260 GCTGCATTTACATGAACTGCAGTTGCAT-GA--
1 GCTGCATTTACATGAACTGCAGTCGCATAAACT
*
6789290 GCTGCATTTACAAGAACTGCAGTCGCATAAACT
1 GCTGCATTTACATGAACTGCAGTCGCATAAACT
* *
6789323 GCTGCATTTACATGAACTGCAGTTGCAT-GA--
1 GCTGCATTTACATGAACTGCAGTCGCATAAACT
*
6789353 GCTGCATTTACAAGAACTGCAGTCGCATAAACT
1 GCTGCATTTACATGAACTGCAGTCGCATAAACT
*
6789386 GCTGCATTTACATGAACTGCAGTCACATAAACT
1 GCTGCATTTACATGAACTGCAGTCGCATAAACT
*
6789419 GCTGCATTTACATGAACTACAGTC
1 GCTGCATTTACATGAACTGCAGTC
6789443 ACATGAGCTG
Statistics
Matches: 163, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
30 52 0.32
31 2 0.01
32 2 0.01
33 107 0.66
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (33 bp):
GCTGCATTTACATGAACTGCAGTCGCATAAACT
Found at i:6789629 original size:90 final size:90
Alignment explanation
Indices: 6789215--6789630 Score: 286
Period size: 96 Copynumber: 4.5 Consensus size: 90
6789205 AACATGATTT
* * * *
6789215 GCAGTCACACGAGCTGCATTTACATGAACTGCAG-TCGCATAAACTGCTGCATTTACATGAACTG
1 GCAGTCACACGAGCTGCATTTACACGAACTGCAGTTC-CAT-GA--GCTGCATTTACACGAAGTG
* * * *
6789279 CAGTTGCATGAGCTGCATTTACA-AGAACT
62 CAATTGCACGAGCTGCATTTACACGGAA-G
* ** * * * *
6789308 GCAGTCGCATAAACTGCTGCATTTACATGAACTGCAGTTGCATGAGCTGCATTTACAAGAACTGC
1 GCAGTCACA-CGA--GCTGCATTTACACGAACTGCAGTTCCATGAGCTGCATTTACACGAAGTGC
* * ** * *
6789373 AGTCGCATAAACTGCTGCATTTACA-TGAACT
63 AATTGCA-CGA--GCTGCATTTACACGGAA-G
** * * * *
6789404 GCAGTCACATAAACTGCTGCATTTACATGAACTACAG-TCACATGAGCTGCATTTACACGGATTG
1 GCAGTCACA-CGA--GCTGCATTTACACGAACTGCAGTTC-CATGAGCTGCATTTACACGAAGTG
* **
6789468 CAGTTGCACGAGCTGCATTTACACGGATT
62 CAATTGCACGAGCTGCATTTACACGGAAG
* * * * *
6789497 GCAGTCGCACGAGCTGCATTTACACGGATTGCAGTTGCATGAGCTGCATTTACATGAAGTGCAAT
1 GCAGTCACACGAGCTGCATTTACACGAACTGCAGTTCCATGAGCTGCATTTACACGAAGTGCAAT
*
6789562 TGCACGAGCTGCATTTACA-TGAAG
66 TGCACGAGCTGCATTTACACGGAAG
* *
6789586 GCAGGTCACACGAGCTGCATTTGCACGAACTG-TGTTCCGATGAGC
1 GCA-GTCACACGAGCTGCATTTACACGAACTGCAGTTCC-ATGAGC
6789631 CGCAACTGCA
Statistics
Matches: 269, Mismatches: 42, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
89 9 0.03
90 91 0.34
91 1 0.00
92 1 0.00
93 54 0.20
94 4 0.01
95 3 0.01
96 105 0.39
97 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (90 bp):
GCAGTCACACGAGCTGCATTTACACGAACTGCAGTTCCATGAGCTGCATTTACACGAAGTGCAAT
TGCACGAGCTGCATTTACACGGAAG
Found at i:6791314 original size:3 final size:3
Alignment explanation
Indices: 6791306--6791333 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6791296 AAAGGGAAAC
6791306 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
6791334 GAAGATGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:6806559 original size:61 final size:61
Alignment explanation
Indices: 6806493--6806685 Score: 232
Period size: 61 Copynumber: 3.2 Consensus size: 61
6806483 TAATTTAATA
6806493 ATAATATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATC
1 ATAATATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATC
* * * * * * * * * ** *
6806554 ATAATATATAATACT-ATAAAA-T-ATAATTTAAAATAATTATTAT-TAAATATAATTTAATA
1 ATAATATATAAT-TTAATAAAATTCTTAGTATGAAAT-ATTCTTATATGAATTTACTAAAATC
6806613 ATAATATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATC
1 ATAATATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATC
6806674 ATAATATATAAT
1 ATAATATATAAT
6806686 ACTATAAAAT
Statistics
Matches: 102, Mismatches: 24, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
58 1 0.01
59 36 0.35
60 16 0.16
61 48 0.47
62 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (61 bp):
ATAATATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATC
Found at i:6806587 original size:120 final size:120
Alignment explanation
Indices: 6806457--6806710 Score: 508
Period size: 120 Copynumber: 2.1 Consensus size: 120
6806447 AAAATATTAC
6806457 TAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTAGT
1 TAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTAGT
6806522 ATGAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATA
66 ATGAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATA
6806577 TAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTAGT
1 TAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTAGT
6806642 ATGAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATA
66 ATGAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATA
6806697 TAATTTAAAATAAT
1 TAATTTAAAATAAT
6806711 AAAATTTGAA
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 134 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTAGT
ATGAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATA
Found at i:6806602 original size:26 final size:28
Alignment explanation
Indices: 6806572--6806635 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
6806562 TAATACTATA
*
6806572 AAATATAATTTAA-AATAAT-TATTATT
1 AAATATAATTTAATAATAATATATAATT
6806598 AAATATAATTTAATAATAATATATAATT
1 AAATATAATTTAATAATAATATATAATT
* *
6806626 TAATAAAATT
1 AAATATAATT
6806636 CTTAGTATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.39
27 6 0.18
28 14 0.42
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATATAATTTAATAATAATATATAATT
Found at i:6806681 original size:59 final size:59
Alignment explanation
Indices: 6806498--6806681 Score: 182
Period size: 59 Copynumber: 3.1 Consensus size: 59
6806488 TAATAATAAT
6806498 ATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATCATA
1 ATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATCATA
* * ** * * * *
6806557 ATAT-ATAATACTATAAAATATAATTTAAAAT-AATTATTATTAAATAT-AATTTA--ATAATAA
1 ATATAAT-TTA--ATAAAAT-T--CTTAGTATGAAATATTCTT--ATATGAATTTACTAAAATCA
6806617 T-
58 TA
6806618 ATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATCATA
1 ATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATCATA
6806677 ATATA
1 ATATA
6806682 TAATACTATA
Statistics
Matches: 95, Mismatches: 16, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
55 4 0.04
56 11 0.12
57 8 0.08
58 9 0.09
59 18 0.19
61 13 0.14
62 9 0.09
63 8 0.08
64 11 0.12
65 4 0.04
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATCATA
Found at i:6806755 original size:20 final size:20
Alignment explanation
Indices: 6806708--6806746 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6806698 AATTTAAAAT
*
6806708 AATAAAATTTGAATCGATTA
1 AATAATATTTGAATCGATTA
* *
6806728 AATGATATTTGAATTGATT
1 AATAATATTTGAATCGATT
6806747 TGATAATATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.41
Consensus pattern (20 bp):
AATAATATTTGAATCGATTA
Found at i:6810874 original size:23 final size:22
Alignment explanation
Indices: 6810848--6810903 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
6810838 TTTAAAAAAA
*
6810848 TTTATAATTTCTTATAAC-TATTT
1 TTTATAATTT-TT-TAACATAATT
6810871 TTTATAATTTTTTAACATAATT
1 TTTATAATTTTTTAACATAATT
*
6810893 TTTAAAATTTT
1 TTTATAATTTT
6810904 AAAAGAGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 4 0.13
22 16 0.53
23 10 0.33
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTATAATTTTTTAACATAATT
Found at i:6812483 original size:15 final size:16
Alignment explanation
Indices: 6812463--6812493 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
6812453 TAAATCCAAA
6812463 GACTCAAATT-AAAAT
1 GACTCAAATTCAAAAT
6812478 GACTCAAATTCAAAAT
1 GACTCAAATTCAAAAT
6812494 TAATCCAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.16, G:0.06, T:0.26
Consensus pattern (16 bp):
GACTCAAATTCAAAAT
Found at i:6820595 original size:23 final size:23
Alignment explanation
Indices: 6820569--6820619 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
6820559 TTGTAGATAC
6820569 AAAAATCTCAATTAATTATAATT
1 AAAAATCTCAATTAATTATAATT
* * *
6820592 AAAAATTTTATTTAATTATAATT
1 AAAAATCTCAATTAATTATAATT
6820615 AAAAA
1 AAAAA
6820620 ATATTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (23 bp):
AAAAATCTCAATTAATTATAATT
Found at i:6820626 original size:21 final size:22
Alignment explanation
Indices: 6820580--6820630 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
6820570 AAAATCTCAA
*
6820580 TTAATTATAATTAAAAATTTTAT
1 TTAATTATAATTAAAAA-TATAT
6820603 TTAATTATAATTAAAAA-ATAT
1 TTAATTATAATTAAAAATATAT
6820624 TTAATTA
1 TTAATTA
6820631 ATGTTGTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 10 0.37
23 17 0.63
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TTAATTATAATTAAAAATATAT
Found at i:6829111 original size:20 final size:20
Alignment explanation
Indices: 6829083--6829123 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
6829073 ACTTTAAAAC
*
6829083 TACAGTATAGGTCAACTCCA
1 TACAATATAGGTCAACTCCA
6829103 TACAATATAGGTCAACTCCA
1 TACAATATAGGTCAACTCCA
6829123 T
1 T
6829124 TCACGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (20 bp):
TACAATATAGGTCAACTCCA
Found at i:6843915 original size:14 final size:15
Alignment explanation
Indices: 6843896--6843936 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
6843886 CATGCCTTTG
6843896 AATATATATA-TATA
1 AATATATATATTATA
6843910 AATATATATATTATA
1 AATATATATATTATA
6843925 AAT-TATA-ATTAT
1 AATATATATATTAT
6843937 TCTAATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.19
14 14 0.54
15 7 0.27
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATATATATTATA
Found at i:6848283 original size:9 final size:8
Alignment explanation
Indices: 6848264--6848293 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
6848254 TTTTAAAATA
6848264 TTTTATATT
1 TTTTA-ATT
6848273 TTTTAATT
1 TTTTAATT
6848281 TTTTAATT
1 TTTTAATT
6848289 TTTTA
1 TTTTA
6848294 TTTAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTAATT
Found at i:6848646 original size:8 final size:8
Alignment explanation
Indices: 6848622--6848705 Score: 57
Period size: 8 Copynumber: 10.0 Consensus size: 8
6848612 GATGTTTTGA
6848622 ATAAGTTTT
1 ATAA-TTTT
6848631 ATTAATTTT
1 A-TAATTTT
6848640 ATAATTTT
1 ATAATTTT
6848648 -TATATTTT
1 ATA-ATTTT
* *
6848656 GTAATGTTC
1 ATAAT-TTT
6848665 ATAAATTTTT
1 AT-AA-TTTT
6848675 ATAATTTT
1 ATAATTTT
*
6848683 AATAA-GTT
1 -ATAATTTT
6848691 -TAATTTT
1 ATAATTTT
6848698 ATAATTTT
1 ATAATTTT
6848706 TTATTCATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
6 3 0.05
7 4 0.07
8 27 0.44
9 17 0.28
10 9 0.15
11 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.60
Consensus pattern (8 bp):
ATAATTTT
Found at i:6853002 original size:15 final size:15
Alignment explanation
Indices: 6852960--6853009 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
6852950 ATGAATTTTT
6852960 ATTTTT-TATACTTTA
1 ATTTTTATATA-TTTA
*
6852975 TTTTATATATATATTTA
1 ATTT-T-TATATATTTA
6852992 ATTTTTATATATTTA
1 ATTTTTATATATTTA
6853007 ATT
1 ATT
6853010 CTATTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 16 0.53
16 2 0.07
17 8 0.27
18 4 0.13
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTTTATATATTTA
Found at i:6853016 original size:19 final size:17
Alignment explanation
Indices: 6852966--6853003 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
6852956 TTTTATTTTT
6852966 TATACTTTATTTTATATA
1 TATA-TTTATTTTATATA
6852984 TATATTTAATTTT-TATA
1 TATATTT-ATTTTATATA
6853001 TAT
1 TAT
6853004 TTAATTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TATATTTATTTTATATA
Found at i:6853017 original size:20 final size:19
Alignment explanation
Indices: 6852975--6853029 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
6852965 TTATACTTTA
*
6852975 TTTTATATATATATTTAAT
1 TTTTATATATTTATTTAAT
6852994 TTTTATATATTTAATTCT-AT
1 TTTTATATATTT-ATT-TAAT
6853014 TTTTATA-ATTT-TTTAA
1 TTTTATATATTTATTTAA
6853030 ATTAATATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
16 1 0.03
17 3 0.09
19 15 0.47
20 12 0.38
21 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTATATATTTATTTAAT
Found at i:6859835 original size:18 final size:19
Alignment explanation
Indices: 6859795--6859838 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
6859785 TAAAAAAACG
6859795 TTTTGAAATTGAATAATGA
1 TTTTGAAATTGAATAATGA
6859814 -TTTGTAAA-TGAATAAT-A
1 TTTTG-AAATTGAATAATGA
6859831 TTTTGAAA
1 TTTTGAAA
6859839 ACGAACGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.17
18 16 0.70
19 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (19 bp):
TTTTGAAATTGAATAATGA
Found at i:6862237 original size:24 final size:24
Alignment explanation
Indices: 6862210--6862272 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 24
6862200 TAGCTCGAAA
*
6862210 GAGCATCCCGTTATTAGCTCTCAT
1 GAGCATCCCGTTATTAGCTCTCAC
** * *
6862234 GAGCATCTTGATATTTGGCTCTCAC
1 GAGCATCCCGTTA-TTAGCTCTCAC
*
6862259 GAGCTTCCCGTTAT
1 GAGCATCCCGTTAT
6862273 ATGGTTCTTG
Statistics
Matches: 29, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
24 11 0.38
25 18 0.62
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (24 bp):
GAGCATCCCGTTATTAGCTCTCAC
Found at i:6866773 original size:24 final size:25
Alignment explanation
Indices: 6866728--6866775 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
6866718 TTTTTTATTG
* **
6866728 AAAAAGGAGAAAAAAATTCATAAAA
1 AAAAAAGAGAAAAAAAAGCATAAAA
6866753 AAAAAAGA-AAAAAAAAGCATAAA
1 AAAAAAGAGAAAAAAAAGCATAAA
6866776 TGTTGCATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.77, C:0.04, G:0.10, T:0.08
Consensus pattern (25 bp):
AAAAAAGAGAAAAAAAAGCATAAAA
Found at i:6874851 original size:26 final size:27
Alignment explanation
Indices: 6874820--6874871 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
6874810 TAAGCTGCTA
6874820 ACTAACTTCTGTAA-CTATCTTTAACT
1 ACTAACTTCTGTAACCTATCTTTAACT
* *
6874846 ACTAACTTCTTTAACCTTTCTTTAAC
1 ACTAACTTCTGTAACCTATCTTTAAC
6874872 AAACCAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.29, C:0.25, G:0.02, T:0.44
Consensus pattern (27 bp):
ACTAACTTCTGTAACCTATCTTTAACT
Found at i:6882477 original size:26 final size:26
Alignment explanation
Indices: 6882439--6882489 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
6882429 TTTGGCAATG
6882439 CTTTTGAAAAGTGCTGTGGAAAAGTA
1 CTTTTGAAAAGTGCTGTGGAAAAGTA
** * *
6882465 CTTTTGAGGAGTGCTTTTGAAAAGT
1 CTTTTGAAAAGTGCTGTGGAAAAGT
6882490 TTGGTTTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
CTTTTGAAAAGTGCTGTGGAAAAGTA
Found at i:6888897 original size:34 final size:34
Alignment explanation
Indices: 6888867--6889916 Score: 1825
Period size: 34 Copynumber: 30.8 Consensus size: 34
6888857 AAATGATACA
6888867 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
* * * * *
6888901 TTAACAGGAGAGATTCCCCGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-GAAATGATGTG
*
6888936 TGAACAGGAGAGATTCCCTGCAATAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
* * *
6888970 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-GAAATGATGTG
6889005 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
* * * * *
6889039 TTAACAGGAGAGATTCCCCGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-GAAATGATGTG
*
6889074 TGAACAGGAGAGATTCCCTGCAATAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
* * *
6889108 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-GAAATGATGTG
6889143 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889177 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889211 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889245 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889279 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889313 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889347 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889381 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889415 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889449 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889483 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889517 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889551 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889585 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889619 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889653 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889687 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889721 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889755 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889789 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
6889823 TGAACAGGAGAGATTCCCTGCAAGAAATGA--TG
1 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
* * * *
6889855 TGAACAGGAAAGATTCCCTGCAACAGAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAAGA-AATGATGTG
* *
6889890 TGAACAGGAAATATTCCCTGCAAGAAA
1 TGAACAGGAGAGATTCCCTGCAAGAAA
6889917 AGACAAGTGA
Statistics
Matches: 971, Mismatches: 38, Indels: 14
0.95 0.04 0.01
Matches are distributed among these distances:
32 25 0.03
33 4 0.00
34 798 0.82
35 144 0.15
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (34 bp):
TGAACAGGAGAGATTCCCTGCAAGAAATGATGTG
Found at i:6891767 original size:9 final size:9
Alignment explanation
Indices: 6891749--6891786 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
6891739 AATTCGTCGG
6891749 TTAACCGAA
1 TTAACCGAA
*
6891758 TTACCCGAA
1 TTAACCGAA
6891767 TTAACCGAA
1 TTAACCGAA
6891776 TTAACCGAA
1 TTAACCGAA
6891785 TT
1 TT
6891787 GAATCACTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (9 bp):
TTAACCGAA
Found at i:6909366 original size:2 final size:2
Alignment explanation
Indices: 6909359--6909384 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6909349 TAAATGCTGA
6909359 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6909385 TCAACATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6914201 original size:1 final size:1
Alignment explanation
Indices: 6914195--6914231 Score: 65
Period size: 1 Copynumber: 37.0 Consensus size: 1
6914185 NNNNNNNNNN
*
6914195 AAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6914232 GGGGGGGGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.97, C:0.00, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:6923240 original size:31 final size:31
Alignment explanation
Indices: 6923198--6923256 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
6923188 GGTCACTAAA
*
6923198 CTATTCGAAAGTTTTCATTTAAGTCATTGAG
1 CTATTCAAAAGTTTTCATTTAAGTCATTGAG
*
6923229 CTATTCAAAAGTTTTTATTTAAGTCATT
1 CTATTCAAAAGTTTTCATTTAAGTCATT
6923257 TGGTCGTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (31 bp):
CTATTCAAAAGTTTTCATTTAAGTCATTGAG
Found at i:6923758 original size:18 final size:17
Alignment explanation
Indices: 6923702--6923764 Score: 65
Period size: 17 Copynumber: 3.6 Consensus size: 17
6923692 TATGGGTCAA
*
6923702 TTGTGAATTTAGAAGAATT
1 TTGTG-ATTTAG-TGAATT
* *
6923721 TT-TGAATTGGTGAATT
1 TTGTGATTTAGTGAATT
6923737 TTGTGATTTAGTGAATTT
1 TTGTGATTTAGTGAA-TT
6923755 TTGTGATTTA
1 TTGTGATTTA
6923765 AAAAGAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
16 7 0.19
17 14 0.38
18 14 0.38
19 2 0.05
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (17 bp):
TTGTGATTTAGTGAATT
Found at i:6925156 original size:80 final size:81
Alignment explanation
Indices: 6925064--6925226 Score: 319
Period size: 80 Copynumber: 2.0 Consensus size: 81
6925054 AGAACCTTAC
6925064 TTGGGAATTTTTTCAGAATGAGTTTAAAAAGAAATATGTTGGTAAAAGATATCTGGACAAGAAGA
1 TTGGGAATTTTTTCAGAATGAGTTTAAAAAGAAATATGTTGGTAAAAGATATCTGGACAAGAAGA
6925129 AGA-GGAATTTCTTGA
66 AGAGGGAATTTCTTGA
6925144 TTGGGAATTTTTTCAGAATGAGTTTAAAAAGAAATATGTTGGTAAAAGATATCTGGACAAGAAGA
1 TTGGGAATTTTTTCAGAATGAGTTTAAAAAGAAATATGTTGGTAAAAGATATCTGGACAAGAAGA
6925209 AGAGGGAATTTCTTGA
66 AGAGGGAATTTCTTGA
6925225 TT
1 TT
6925227 TGCGACAGGG
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 68 0.83
81 14 0.17
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (81 bp):
TTGGGAATTTTTTCAGAATGAGTTTAAAAAGAAATATGTTGGTAAAAGATATCTGGACAAGAAGA
AGAGGGAATTTCTTGA
Found at i:6942783 original size:13 final size:13
Alignment explanation
Indices: 6942765--6942789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6942755 CGTACAGCTG
6942765 TTTTCTTTTTTTT
1 TTTTCTTTTTTTT
6942778 TTTTCTTTTTTT
1 TTTTCTTTTTTT
6942790 AAATATTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTCTTTTTTTT
Found at i:6943095 original size:29 final size:28
Alignment explanation
Indices: 6943063--6943117 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
6943053 TTTTAATTTT
*
6943063 TAAAAATTTAA-ATATTAAATTCTTAAAAA
1 TAAAAATATAAGA-ATTAAATT-TTAAAAA
6943092 TAAAAATATAAGAATTAAATTTTAAA
1 TAAAAATATAAGAATTAAATTTTAAA
6943118 TTTGTGAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 5 0.21
29 18 0.75
30 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (28 bp):
TAAAAATATAAGAATTAAATTTTAAAAA
Found at i:6943098 original size:23 final size:23
Alignment explanation
Indices: 6943057--6943100 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
6943047 CTTAATTTTT
* **
6943057 AATTTTTAAAAATTTAAATATTA
1 AATTCTTAAAAATAAAAATATTA
6943080 AATTCTTAAAAATAAAAATAT
1 AATTCTTAAAAATAAAAATAT
6943101 AAGAATTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
AATTCTTAAAAATAAAAATATTA
Found at i:6943715 original size:7 final size:7
Alignment explanation
Indices: 6943703--6943731 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
6943693 GCAAAAAAAT
6943703 ATTTTAA
1 ATTTTAA
6943710 ATTTTAA
1 ATTTTAA
6943717 ATTTTAA
1 ATTTTAA
6943724 ATTTTAA
1 ATTTTAA
6943731 A
1 A
6943732 ATACTTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTTTAA
Found at i:6944366 original size:47 final size:47
Alignment explanation
Indices: 6944296--6944393 Score: 169
Period size: 47 Copynumber: 2.1 Consensus size: 47
6944286 AAATGCCAAA
* * *
6944296 TTTTGGCTTCAGAGAGAATACACACGAGACGCGAGACTTTAGCTTAG
1 TTTTGGCTTCAGAGAGAAAACACACGAGACACGAGACTTTAGCCTAG
6944343 TTTTGGCTTCAGAGAGAAAACACACGAGACACGAGACTTTAGCCTAG
1 TTTTGGCTTCAGAGAGAAAACACACGAGACACGAGACTTTAGCCTAG
6944390 TTTT
1 TTTT
6944394 CCCGTTTTCT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (47 bp):
TTTTGGCTTCAGAGAGAAAACACACGAGACACGAGACTTTAGCCTAG
Found at i:6944429 original size:27 final size:27
Alignment explanation
Indices: 6944397--6944455 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
6944387 TAGTTTTCCC
**
6944397 GTTTTC-TCTTCATCTTTTAGGGTTTA
1 GTTTTCTTCTTCATAGTTTAGGGTTTA
*
6944423 TGTTTTCTTCTTCGTAGTTTAGGGTTTA
1 -GTTTTCTTCTTCATAGTTTAGGGTTTA
6944451 GTTTT
1 GTTTT
6944456 TTGCTTCCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 11 0.39
28 17 0.61
ACGTcount: A:0.10, C:0.12, G:0.19, T:0.59
Consensus pattern (27 bp):
GTTTTCTTCTTCATAGTTTAGGGTTTA
Found at i:6948385 original size:127 final size:126
Alignment explanation
Indices: 6948144--6948713 Score: 765
Period size: 127 Copynumber: 4.5 Consensus size: 126
6948134 CCCAAACATG
* *
6948144 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * * *
6948209 TAGAA--GTGATTTTATACTATTTGCTCAGAAACGTCAAGTTGAAATTATTTTTCTAGGAC
66 TTGAAGCGTTATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
6948268 CTACTGTAGCAAAAGCGCGTCCACGAGGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCT
* * * *
6948332 GTTTGCAGCGTTATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTTTTCAGGAC
64 GCTTGAAGCGTTATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
6948395 CTACTGTAGCAAAAGCGCGTCCACGTA-GGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACG-AGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
* *
6948459 TTTGAAGCGTT-TTTTAAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
65 CTTGAAGCGTTATTTT-ATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
* * * *
6948522 CAACTGTAGTAAAAGCGCGTTCACGAGGGTGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * **
6948587 TTAAAGCGTTTTTTTA-ACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAATAC
66 TTGAAGCGTTATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * * * * * * * * * *
6948647 CTACTATAGCAAAAACGCGTACACGTGGGCACGACTTCAAAAATCCTTCTAATAAATCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
6948712 TT
66 TT
6948714 TGATTTTATC
Statistics
Matches: 399, Mismatches: 37, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
124 27 0.07
125 101 0.25
126 115 0.29
127 151 0.38
128 5 0.01
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (126 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGTTATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
Found at i:6948850 original size:8 final size:9
Alignment explanation
Indices: 6948829--6948866 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
6948819 TTTTTTCTCC
6948829 AAAAATCCT
1 AAAAATCCT
6948838 AAAAATCCT
1 AAAAATCCT
*
6948847 AAAAACCCT
1 AAAAATCCT
*
6948856 AAAAATTCT
1 AAAAATCCT
6948865 AA
1 AA
6948867 CATGGGAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.58, C:0.21, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAAATCCT
Found at i:6949538 original size:15 final size:15
Alignment explanation
Indices: 6949518--6949546 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6949508 ACCCAATATT
6949518 TTTACAATATTCATC
1 TTTACAATATTCATC
6949533 TTTACAATATTCAT
1 TTTACAATATTCAT
6949547 TTTTCTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.48
Consensus pattern (15 bp):
TTTACAATATTCATC
Found at i:6949555 original size:19 final size:19
Alignment explanation
Indices: 6949531--6949568 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
6949521 ACAATATTCA
6949531 TCTTTACAA-TATTCATTTT
1 TCTTTA-AATTATTCATTTT
*
6949550 TCTTTAAATTTTTCATTTT
1 TCTTTAAATTATTCATTTT
6949569 AAGCTACGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (19 bp):
TCTTTAAATTATTCATTTT
Found at i:6951034 original size:8 final size:8
Alignment explanation
Indices: 6951016--6951064 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
6951006 TTAAATTTTA
6951016 TAAAAATAT
1 TAAAAA-AT
6951025 TAAAAAAT
1 TAAAAAAT
**
6951033 TATCAAAT
1 TAAAAAAT
6951041 TAAAAAA-
1 TAAAAAAT
*
6951048 TAAAAAGT
1 TAAAAAAT
6951056 TAAAAAAT
1 TAAAAAAT
6951064 T
1 T
6951065 GCATGAAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
7 6 0.18
8 21 0.64
9 6 0.18
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (8 bp):
TAAAAAAT
Found at i:6952844 original size:29 final size:30
Alignment explanation
Indices: 6952795--6952859 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
6952785 TCTGCGATAT
*
6952795 TATATATGAATTTTGATTTTG-TGCAATTC
1 TATATATGAATTTTGAATTTGATGCAATTC
* *
6952824 TATATGTGTAATTTT-AATTTGATTCAATTC
1 TATATATG-AATTTTGAATTTGATGCAATTC
6952854 TATATA
1 TATATA
6952860 CGTTTATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.52
Consensus pattern (30 bp):
TATATATGAATTTTGAATTTGATGCAATTC
Found at i:6963707 original size:91 final size:91
Alignment explanation
Indices: 6963552--6963762 Score: 422
Period size: 91 Copynumber: 2.3 Consensus size: 91
6963542 GAAGACTTGA
6963552 ATTATCCTGCAAAACTGGAGCATTCTGCAGACGTGGTGTCAGAAACAGCTGTAAGTGTTCTTAAC
1 ATTATCCTGCAAAACTGGAGCATTCTGCAGACGTGGTGTCAGAAACAGCTGTAAGTGTTCTTAAC
6963617 AATTCTTTGCTTCTCTTATAGATTGG
66 AATTCTTTGCTTCTCTTATAGATTGG
6963643 ATTATCCTGCAAAACTGGAGCATTCTGCAGACGTGGTGTCAGAAACAGCTGTAAGTGTTCTTAAC
1 ATTATCCTGCAAAACTGGAGCATTCTGCAGACGTGGTGTCAGAAACAGCTGTAAGTGTTCTTAAC
6963708 AATTCTTTGCTTCTCTTATAGATTGG
66 AATTCTTTGCTTCTCTTATAGATTGG
6963734 ATTATCCTGCAAAACTGGAGCATTCTGCA
1 ATTATCCTGCAAAACTGGAGCATTCTGCA
6963763 TTTGTCATCG
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 120 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (91 bp):
ATTATCCTGCAAAACTGGAGCATTCTGCAGACGTGGTGTCAGAAACAGCTGTAAGTGTTCTTAAC
AATTCTTTGCTTCTCTTATAGATTGG
Found at i:6973114 original size:367 final size:369
Alignment explanation
Indices: 6972441--6973177 Score: 1451
Period size: 367 Copynumber: 2.0 Consensus size: 369
6972431 ATTTTATTTT
6972441 TCGTTTTCCCCTTTAGTTTTAACAAATGAAAAATATAAAAAAATTTCATTAAAAGAGATGGGAAA
1 TCGTTTTCCCCTTTAGTTTTAACAAATGAAAAATATAAAAAAATTTCATTAAAAGAGATGGGAAA
6972506 GGGAGGAAAACAGAGGAAGCAATAGAAGATAATGAAAAAAAAGAAAAAAAGAAAAGTTAAAAAGA
66 GGGAGGAAAACAGAGGAAGCAATAGAAGATAATGAAAAAAAAGAAAAAAAGAAAAGTTAAAAAGA
6972571 CGAAAGAAAAAAATTAAATTGCTCAAAATGAAAAAATATGGGGACTAATTATATAATTTAACCTA
131 CGAAAGAAAAAAATTAAATTGCTCAAAATGAAAAAATATGGGGACTAATTATATAATTTAACCTA
6972636 AAATTTTTATTTAAAATGATGATTTAACGTGCTACGTTAGCTTATCATTACACCATTAACGGCAA
196 AAATTTTTATTTAAAATGATGATTTAACGTGCTACGTTAGCTTATCATTACACCATTAACGGCAA
6972701 TTAAAGGTTAAGTGACTAAAATATTATAACACATTAATGTAAGTTACTAAAATGTAGTATTTCAA
261 TTAAAGGTTAAGTGACTAAAATATTATAACACATTAATGTAAGTTACTAAAATGTAGTATTTCAA
6972766 ACATAAGTGACT-AAATGTAACCTGAGGCAAAC-AAAGTGACTA
326 ACATAAGTGACTAAAATGTAACCTGAGGCAAACAAAAGTGACTA
6972808 TCGTTTTCCCCTTTAGTTTTAACAAATGAAAAATATAAAAAAATTTCATTAAAAGAGATGGGAAA
1 TCGTTTTCCCCTTTAGTTTTAACAAATGAAAAATATAAAAAAATTTCATTAAAAGAGATGGGAAA
6972873 GGGAGGAAAACAGAGGAAGCAATAGAAGATAATGAAAAAAAAGAAAAAAAGAAAAGTTAAAAAGA
66 GGGAGGAAAACAGAGGAAGCAATAGAAGATAATGAAAAAAAAGAAAAAAAGAAAAGTTAAAAAGA
6972938 CGAAAGAAAAAAATTAAATTGCTCAAAATGAAAAAATATGGGGACTAATTATATAATTTAACCTA
131 CGAAAGAAAAAAATTAAATTGCTCAAAATGAAAAAATATGGGGACTAATTATATAATTTAACCTA
6973003 AAATTTTTATTTAAAATGATGATTTAACGTGCTACGTTAGCTTATCATTACACCATTAACGGCAA
196 AAATTTTTATTTAAAATGATGATTTAACGTGCTACGTTAGCTTATCATTACACCATTAACGGCAA
6973068 TTAAAGGTTAAGTGACTAAAATATTATAACACATTAATGTAAGTTACTAAAATGTAGTATTTCAA
261 TTAAAGGTTAAGTGACTAAAATATTATAACACATTAATGTAAGTTACTAAAATGTAGTATTTCAA
*
6973133 ACATAAGTGACTAAAATGTAACCTGAGGTAAACAAAAGTGACTA
326 ACATAAGTGACTAAAATGTAACCTGAGGCAAACAAAAGTGACTA
6973177 T
1 T
6973178 TTTGATAGTT
Statistics
Matches: 367, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
367 337 0.92
368 19 0.05
369 11 0.03
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.27
Consensus pattern (369 bp):
TCGTTTTCCCCTTTAGTTTTAACAAATGAAAAATATAAAAAAATTTCATTAAAAGAGATGGGAAA
GGGAGGAAAACAGAGGAAGCAATAGAAGATAATGAAAAAAAAGAAAAAAAGAAAAGTTAAAAAGA
CGAAAGAAAAAAATTAAATTGCTCAAAATGAAAAAATATGGGGACTAATTATATAATTTAACCTA
AAATTTTTATTTAAAATGATGATTTAACGTGCTACGTTAGCTTATCATTACACCATTAACGGCAA
TTAAAGGTTAAGTGACTAAAATATTATAACACATTAATGTAAGTTACTAAAATGTAGTATTTCAA
ACATAAGTGACTAAAATGTAACCTGAGGCAAACAAAAGTGACTA
Found at i:6976311 original size:5 final size:5
Alignment explanation
Indices: 6976301--6976334 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
6976291 GACTTTTAAT
6976301 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GAAA
6976335 GAACCAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:6983581 original size:86 final size:87
Alignment explanation
Indices: 6983479--6983652 Score: 332
Period size: 86 Copynumber: 2.0 Consensus size: 87
6983469 GAATTATATT
*
6983479 AAGTCACCTCATCAATGAGTAAAATAAAAAAATTTTAAGGACTTAAAAATAAATATTAATCAATT
1 AAGTCACCTCATCAATGAGTAAAATAAAAAAATTTTAAGGACTTAAAAATAAATATTAATAAATT
6983544 TATTTAAGTAT-ATTAAAATAA
66 TATTTAAGTATAATTAAAATAA
6983565 AAGTCACCTCATCAATGAGTAAAATAAAAAAATTTTAAGGACTTAAAAATAAATATTAATAAATT
1 AAGTCACCTCATCAATGAGTAAAATAAAAAAATTTTAAGGACTTAAAAATAAATATTAATAAATT
6983630 TATTTAAGTATAATTAAAATAA
66 TATTTAAGTATAATTAAAATAA
6983652 A
1 A
6983653 TTAAAGTATT
Statistics
Matches: 86, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
86 75 0.87
87 11 0.13
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.32
Consensus pattern (87 bp):
AAGTCACCTCATCAATGAGTAAAATAAAAAAATTTTAAGGACTTAAAAATAAATATTAATAAATT
TATTTAAGTATAATTAAAATAA
Found at i:6988058 original size:26 final size:26
Alignment explanation
Indices: 6988012--6988069 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
6988002 AAAAGAGCCA
* *
6988012 TAATCAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACCTT
** *
6988038 TAATCAGGAAGCTCATGAAGAGCCTT
1 TAATCAGGAAGCTCACAAAGAACCTT
6988064 TAATCA
1 TAATCA
6988070 AGAGCTCCGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACCTT
Found at i:6991759 original size:22 final size:22
Alignment explanation
Indices: 6991731--6991783 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
6991721 ATCTTTACAT
*
6991731 GGAAAAACCTCTCCGATGAGGA
1 GGAAAAACCTCTCCGAAGAGGA
6991753 GGAAAAACCTCTCCGAAGAGGA
1 GGAAAAACCTCTCCGAAGAGGA
**
6991775 TAAAAAACC
1 GGAAAAACC
6991784 ACAGATAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.11
Consensus pattern (22 bp):
GGAAAAACCTCTCCGAAGAGGA
Found at i:6992862 original size:26 final size:26
Alignment explanation
Indices: 6992833--6992886 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
6992823 TCAGTTTAAG
6992833 TTAGCCTAACTCTCGCAAAATGAGAA
1 TTAGCCTAACTCTCGCAAAATGAGAA
6992859 TTAGCCTAACTCTCGCAAAATGAGAA
1 TTAGCCTAACTCTCGCAAAATGAGAA
6992885 TT
1 TT
6992887 CTCGATAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (26 bp):
TTAGCCTAACTCTCGCAAAATGAGAA
Found at i:6993675 original size:25 final size:25
Alignment explanation
Indices: 6993642--6993691 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
6993632 AGAGGGATCC
*
6993642 TGATGAAGTTG-GCTAGCATGCTGCA
1 TGATGAAG-TGAGCCAGCATGCTGCA
6993667 TGATGAAGTGAGCCAGCATGCTGCA
1 TGATGAAGTGAGCCAGCATGCTGCA
6993692 CCACCAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (25 bp):
TGATGAAGTGAGCCAGCATGCTGCA
Found at i:6998108 original size:25 final size:25
Alignment explanation
Indices: 6998066--6998115 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
6998056 CAAGGAGGAG
* *
6998066 TGATGAAGTTGGCTAGCATGTTGCA
1 TGATGAAGTTGGCCAGCATGCTGCA
6998091 TGATGAAG-TGAGCCAGCATGCTGCA
1 TGATGAAGTTG-GCCAGCATGCTGCA
6998116 CCACCAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (25 bp):
TGATGAAGTTGGCCAGCATGCTGCA
Found at i:7002777 original size:48 final size:48
Alignment explanation
Indices: 7002703--7002798 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
7002693 GGAGCTGAAA
7002703 CCATATGCTGTCCTTGAAGAAGCGTTAGCCGGAGAAGGAATCTCAGCT
1 CCATATGCTGTCCTTGAAGAAGCGTTAGCCGGAGAAGGAATCTCAGCT
*
7002751 CCATATGCTGTCCTTGAAG-AGTCGTTAGTCGGAGAAGGAATCTCAGCT
1 CCATATGCTGTCCTTGAAGAAG-CGTTAGCCGGAGAAGGAATCTCAGCT
7002799 ATCCTCTGCT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 2 0.04
48 44 0.96
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (48 bp):
CCATATGCTGTCCTTGAAGAAGCGTTAGCCGGAGAAGGAATCTCAGCT
Found at i:7006067 original size:35 final size:35
Alignment explanation
Indices: 7006021--7006097 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
7006011 CCACATCATC
*
7006021 AGTAAGCTTCGATTCAATTAGAAGAACAAATCCAA
1 AGTAAACTTCGATTCAATTAGAAGAACAAATCCAA
*
7006056 AGTAAACTTCGATTCAATTAGAAGAACAAATCCAG
1 AGTAAACTTCGATTCAATTAGAAGAACAAATCCAA
7006091 AGTAAAC
1 AGTAAAC
7006098 AACGCTAACA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (35 bp):
AGTAAACTTCGATTCAATTAGAAGAACAAATCCAA
Found at i:7009890 original size:23 final size:23
Alignment explanation
Indices: 7009841--7009892 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
7009831 TATGAATTTT
* **
7009841 AAAATTTTAAAAATAAAGAGATT
1 AAAATTTTAAAAATAAAAAGACA
* *
7009864 AAAATTTTGAAAATAAAAATACA
1 AAAATTTTAAAAATAAAAAGACA
7009887 AAAATT
1 AAAATT
7009893 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (23 bp):
AAAATTTTAAAAATAAAAAGACA
Found at i:7015478 original size:11 final size:11
Alignment explanation
Indices: 7015462--7015486 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7015452 GTCAATCCAT
7015462 AAAAAAAACAA
1 AAAAAAAACAA
7015473 AAAAAAAACAA
1 AAAAAAAACAA
7015484 AAA
1 AAA
7015487 TAAACACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:7019661 original size:25 final size:24
Alignment explanation
Indices: 7019620--7019670 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 24
7019610 ATAACTTCAG
7019620 AATTTTTTTAAGATTTAAATAATATA
1 AATTTTTTTAAGATTT--ATAATATA
*
7019646 AATTTTTTTAA-CTTTATAATATA
1 AATTTTTTTAAGATTTATAATATA
7019669 AA
1 AA
7019671 AAAAATTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 10 0.42
25 3 0.12
26 11 0.46
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (24 bp):
AATTTTTTTAAGATTTATAATATA
Found at i:7020825 original size:5 final size:5
Alignment explanation
Indices: 7020810--7020842 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
7020800 ATATGACTAG
7020810 TTATAT TTATT TTATT TTATT TTATT TTATT TT
1 TTAT-T TTATT TTATT TTATT TTATT TTATT TT
7020843 TATGAGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:7032087 original size:1 final size:1
Alignment explanation
Indices: 7032081--7032128 Score: 60
Period size: 1 Copynumber: 48.0 Consensus size: 1
7032071 AACATTGCTG
* ***
7032081 TTTTTTTTTTTTTTTGTTAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7032129 GAGAGGGGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.02, C:0.00, G:0.06, T:0.92
Consensus pattern (1 bp):
T
Found at i:7044946 original size:79 final size:79
Alignment explanation
Indices: 7044815--7044989 Score: 323
Period size: 79 Copynumber: 2.2 Consensus size: 79
7044805 GAAAATCAAA
*
7044815 ATGAAATCAATATCTGAAAAATACATGAAATGCATGGAACTTGGTATTTGATGAGCTCATCTTTG
1 ATGAAATCAATATCTAAAAAATACATGAAATGCATGGAACTTGGTATTTGATGAGCTCATCTTTG
7044880 TTATTGATATTTAC
66 TTATTGATATTTAC
7044894 ATGAAATCAATATCTAAAAAATACATGAAATGCATGGAACTTGGTATTTGATGAGCTCATCTTTG
1 ATGAAATCAATATCTAAAAAATACATGAAATGCATGGAACTTGGTATTTGATGAGCTCATCTTTG
7044959 TTATTGATATTTAC
66 TTATTGATATTTAC
* *
7044973 ATGAAATGAATAACTAA
1 ATGAAATCAATATCTAA
7044990 CATATTTGAT
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 93 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.35
Consensus pattern (79 bp):
ATGAAATCAATATCTAAAAAATACATGAAATGCATGGAACTTGGTATTTGATGAGCTCATCTTTG
TTATTGATATTTAC
Found at i:7049292 original size:14 final size:14
Alignment explanation
Indices: 7049273--7049301 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7049263 TCTGATGATT
7049273 GCCTGTTATCCAGA
1 GCCTGTTATCCAGA
7049287 GCCTGTTATCCAGA
1 GCCTGTTATCCAGA
7049301 G
1 G
7049302 GCAGAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.28
Consensus pattern (14 bp):
GCCTGTTATCCAGA
Found at i:7051077 original size:24 final size:24
Alignment explanation
Indices: 7051050--7051097 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7051040 TGTTCTTTGA
* * *
7051050 TTAAGTGCTCTTCGGAGCTTCCCG
1 TTAAGTACTCTTCAGAGCTACCCG
7051074 TTAAGTACTCTTCAGAGCTACCCG
1 TTAAGTACTCTTCAGAGCTACCCG
7051098 ACATAGGCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (24 bp):
TTAAGTACTCTTCAGAGCTACCCG
Found at i:7061287 original size:3 final size:3
Alignment explanation
Indices: 7061279--7061373 Score: 91
Period size: 3 Copynumber: 31.7 Consensus size: 3
7061269 TAAAACAATT
* *
7061279 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * ** * * *
7061327 TAA TGA TGA TGA TGA TGG TAT TAA TAA TAA TAA CAA TAA TAA AAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7061374 TTAAAATTAA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7065116 original size:21 final size:22
Alignment explanation
Indices: 7065079--7065123 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
7065069 GTAATGGTTC
7065079 ACTTTAACTTCCATGTACATAA
1 ACTTTAACTTCCATGTACATAA
*
7065101 ACTTTAA-TTTCATGTACATAA
1 ACTTTAACTTCCATGTACATAA
7065122 AC
1 AC
7065124 ATATATGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (22 bp):
ACTTTAACTTCCATGTACATAA
Found at i:7065478 original size:24 final size:24
Alignment explanation
Indices: 7065413--7065478 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 24
7065403 GGATGCTTTG
* * *
7065413 AAGAGCTATTATCGGGAAGCTCAT
1 AAGAGCTAATAACGGGAAGCTAAT
* * *
7065437 AAGAACCATATAATGGGAAGCTAAT
1 AAGAGCTA-ATAACGGGAAGCTAAT
*
7065462 GAGAGCTAATAACGGGA
1 AAGAGCTAATAACGGGA
7065479 CGCTCTTCTG
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
24 14 0.45
25 17 0.55
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.20
Consensus pattern (24 bp):
AAGAGCTAATAACGGGAAGCTAAT
Found at i:7068879 original size:105 final size:105
Alignment explanation
Indices: 7068697--7068907 Score: 422
Period size: 105 Copynumber: 2.0 Consensus size: 105
7068687 ATTTTTCAAT
7068697 TTTGCCACAAAATTTCATTTTTCTCTCGATTTGGTCCTCAATTGAGCTGAAAGGAAATTTTCCCT
1 TTTGCCACAAAATTTCATTTTTCTCTCGATTTGGTCCTCAATTGAGCTGAAAGGAAATTTTCCCT
7068762 TCCAGCCCCTCTATGTTATGTGCACATTCAAATCAGTCCC
66 TCCAGCCCCTCTATGTTATGTGCACATTCAAATCAGTCCC
7068802 TTTGCCACAAAATTTCATTTTTCTCTCGATTTGGTCCTCAATTGAGCTGAAAGGAAATTTTCCCT
1 TTTGCCACAAAATTTCATTTTTCTCTCGATTTGGTCCTCAATTGAGCTGAAAGGAAATTTTCCCT
7068867 TCCAGCCCCTCTATGTTATGTGCACATTCAAATCAGTCCC
66 TCCAGCCCCTCTATGTTATGTGCACATTCAAATCAGTCCC
7068907 T
1 T
7068908 CTTTTTTTAT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 106 1.00
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (105 bp):
TTTGCCACAAAATTTCATTTTTCTCTCGATTTGGTCCTCAATTGAGCTGAAAGGAAATTTTCCCT
TCCAGCCCCTCTATGTTATGTGCACATTCAAATCAGTCCC
Found at i:7069026 original size:20 final size:20
Alignment explanation
Indices: 7068972--7069026 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
7068962 CCTTTTAGCA
7068972 TTTTTATTATTT-TCT-TCAT
1 TTTTTATTATTTAT-TATCAT
*
7068991 TATTTTA-T-TGTATTATCAT
1 T-TTTTATTATTTATTATCAT
7069010 TTTTTATTATTTATTAT
1 TTTTTATTATTTATTAT
7069027 TACTATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
18 8 0.28
19 9 0.31
20 12 0.41
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTTATTATTTATTATCAT
Found at i:7070935 original size:12 final size:11
Alignment explanation
Indices: 7070920--7071013 Score: 55
Period size: 11 Copynumber: 9.4 Consensus size: 11
7070910 AAAAGTTAAA
7070920 AAAAAGTATTTT
1 AAAAA-TATTTT
7070932 AAAAATATTTT
1 AAAAATATTTT
7070943 --AAA-A--TT
1 AAAAATATTTT
**
7070949 AAAAA-AAATT
1 AAAAATATTTT
*
7070959 AAAAGTATTTT
1 AAAAATATTTT
7070970 AAAAATATTTT
1 AAAAATATTTT
*
7070981 --AAA-A-TTA
1 AAAAATATTTT
*
7070988 AAAAAAATTTT
1 AAAAATATTTT
*
7070999 AAAAGTATTTT
1 AAAAATATTTT
7071010 AAAA
1 AAAA
7071014 TTTAAAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 19
0.71 0.09 0.21
Matches are distributed among these distances:
6 2 0.03
7 2 0.03
8 6 0.09
9 9 0.14
10 7 0.11
11 34 0.52
12 5 0.08
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:7070997 original size:29 final size:29
Alignment explanation
Indices: 7070965--7071024 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
7070955 AATTAAAAGT
7070965 ATTTTAAAAATATTTTAAAATTAAAAAAA
1 ATTTTAAAAATATTTTAAAATTAAAAAAA
* *
7070994 ATTTTAAAAGTATTTTAAAATTTAAAAAA
1 ATTTTAAAAATATTTTAAAATTAAAAAAA
7071023 AT
1 AT
7071025 AAAAAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (29 bp):
ATTTTAAAAATATTTTAAAATTAAAAAAA
Found at i:7071030 original size:38 final size:38
Alignment explanation
Indices: 7070894--7071013 Score: 168
Period size: 38 Copynumber: 3.0 Consensus size: 38
7070884 ACCAAAAATT
*
7070894 TATTTTAAAAATTAAAAAAAGTTAAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATTAAAAAAAATT----AAAAGTATTTTAAAAA
7070937 TATTTTAAAATTAAAAAAAATTAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAGTATTTTAAAAA
7070975 TATTTTAAAATTAAAAAAAATTTTAAAAGTATTTTAAAA
1 TATTTTAAAATTAAAAAAAA--TTAAAAGTATTTTAAAA
7071014 TTTAAAAAAA
Statistics
Matches: 74, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
38 36 0.49
40 17 0.23
42 15 0.20
43 6 0.08
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (38 bp):
TATTTTAAAATTAAAAAAAATTAAAAGTATTTTAAAAA
Found at i:7071035 original size:18 final size:19
Alignment explanation
Indices: 7070931--7071035 Score: 69
Period size: 18 Copynumber: 5.6 Consensus size: 19
7070921 AAAAGTATTT
*
7070931 TAAAAATATTTTAAAATTAA
1 TAAAAA-ATTTTAAAAGTAA
*
7070951 -AAAAAA--TTAAAAGTATTT
1 TAAAAAATTTTAAAAGTA--A
*
7070969 TAAAAATATTTTAAAATTAA
1 TAAAAA-ATTTTAAAAGTAA
*
7070989 -AAAAAATTTTAAAAGTAT
1 TAAAAAATTTTAAAAGTAA
** *
7071007 TTTAAAA-TTTAAAA-AAA
1 TAAAAAATTTTAAAAGTAA
7071024 TAAAAAATTTTA
1 TAAAAAATTTTA
7071036 TTATATTCGG
Statistics
Matches: 65, Mismatches: 12, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
16 8 0.12
17 6 0.09
18 23 0.35
19 19 0.29
20 1 0.02
22 8 0.12
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
TAAAAAATTTTAAAAGTAA
Found at i:7073253 original size:43 final size:43
Alignment explanation
Indices: 7073187--7073332 Score: 188
Period size: 43 Copynumber: 3.4 Consensus size: 43
7073177 TTTGATATGG
* *
7073187 TCTTTAGCGACGCTTCTACTAAAAACGCCACTATAGAACATGA
1 TCTTTAGCGGCGCTTCTACTAAAAACGCCACTAAAGAACATGA
* * * *
7073230 -CTTTTAGCGGCGCATCT-CGTAAAAACGTCGCTAAATAACATGA
1 TC-TTTAGCGGCGCTTCTAC-TAAAAACGCCACTAAAGAACATGA
*
7073273 TCTTTAGCGGCGCTTCTACTAAAAACGCCATTAAAGAACATGA
1 TCTTTAGCGGCGCTTCTACTAAAAACGCCACTAAAGAACATGA
*
7073316 TCTTTAGCAGCGCTTCT
1 TCTTTAGCGGCGCTTCT
7073333 CCACATAAAC
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
42 2 0.02
43 83 0.95
44 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTCTACTAAAAACGCCACTAAAGAACATGA
Found at i:7077715 original size:63 final size:63
Alignment explanation
Indices: 7077595--7077716 Score: 208
Period size: 63 Copynumber: 1.9 Consensus size: 63
7077585 AAAGTAAGTC
*
7077595 ATTAATATGTGGTTTTCTAATGTTGATTGAAGAAGGTATAATATTTTACGTTCAAGAAAATTG
1 ATTAATATGTGGTTTTCTAATGTTGATTGAAGAAGGTATAATATTTCACGTTCAAGAAAATTG
* * *
7077658 ATTAATATGTGGTTTTTTAATGTTGATTGAAGAAGGTATAATATTTCAGGTTGAAGAAA
1 ATTAATATGTGGTTTTCTAATGTTGATTGAAGAAGGTATAATATTTCACGTTCAAGAAA
7077717 GGGCAATCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.41
Consensus pattern (63 bp):
ATTAATATGTGGTTTTCTAATGTTGATTGAAGAAGGTATAATATTTCACGTTCAAGAAAATTG
Found at i:7087050 original size:11 final size:11
Alignment explanation
Indices: 7087015--7087051 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
7087005 TTTTGCTACC
7087015 ATTTTACTATT
1 ATTTTACTATT
*
7087026 ATATTACTATT
1 ATTTTACTATT
*
7087037 ATTTTATTATT
1 ATTTTACTATT
7087048 ATTT
1 ATTT
7087052 GAATATTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTTACTATT
Found at i:7087058 original size:22 final size:22
Alignment explanation
Indices: 7087015--7087058 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7087005 TTTTGCTACC
*
7087015 ATTTTACTATTATATTACTATT
1 ATTTTACTATTATATTAATATT
*
7087037 ATTTTATTATTAT-TTGAATATT
1 ATTTTACTATTATATT-AATATT
7087059 GTATAACACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (22 bp):
ATTTTACTATTATATTAATATT
Found at i:7100177 original size:51 final size:49
Alignment explanation
Indices: 7100066--7100179 Score: 129
Period size: 51 Copynumber: 2.2 Consensus size: 49
7100056 AAAATTCACG
* * * * *
7100066 CATTTTGTCAATTTGGTCTTGATTTAACATATTTGGCCCATAATATTTA
1 CATTTTATCAATTTGATCTTGATTTAACAAATTTAGCCCACAATATTTA
* *
7100115 CATATTCTATCAATTTGATCTTGATTTAACAAATTTATCCCGCAATACTTTCA
1 CAT-TT-TATCAATTTGATCTTGATTTAACAAATTTAGCCCACAATA-TTT-A
7100168 CATTTTATCAAT
1 CATTTTATCAAT
7100180 ATTTACATAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
49 3 0.06
50 2 0.04
51 40 0.74
52 5 0.09
53 4 0.07
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.45
Consensus pattern (49 bp):
CATTTTATCAATTTGATCTTGATTTAACAAATTTAGCCCACAATATTTA
Found at i:7106175 original size:118 final size:118
Alignment explanation
Indices: 7105967--7106204 Score: 413
Period size: 118 Copynumber: 2.0 Consensus size: 118
7105957 CGCTCATGCA
* *
7105967 CTTTTGCATTTTGGGGCGAACAAATCATCCTCATGCTTAGAAGCATCATATTTTGGATTAACAAT
1 CTTTTGCATTTTGGGGCGAACAAATCATCCTCATGCTTAAAAGCATCATACTTTGGATTAACAAT
* *
7106032 TTAAACTTATACTTAGAAGCATCATACTTTGGATGAAAATTTTAAGCTTGTGC
66 TTAAACTTATACTTAGAAGCATCATACTTGGGATGAAAAGTTTAAGCTTGTGC
* * *
7106085 CTTTTGCATTTTGGGGCTAACAAATCATGCTCTTGCTTAAAAGCATCATACTTTGGATTAACAAT
1 CTTTTGCATTTTGGGGCGAACAAATCATCCTCATGCTTAAAAGCATCATACTTTGGATTAACAAT
7106150 TTAAACTTATACTTAGAAGCATCATACTTGGGATGAAAAGTTTAAGCTTGTGC
66 TTAAACTTATACTTAGAAGCATCATACTTGGGATGAAAAGTTTAAGCTTGTGC
7106203 CT
1 CT
7106205 AAGAGTGTTG
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 113 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (118 bp):
CTTTTGCATTTTGGGGCGAACAAATCATCCTCATGCTTAAAAGCATCATACTTTGGATTAACAAT
TTAAACTTATACTTAGAAGCATCATACTTGGGATGAAAAGTTTAAGCTTGTGC
Done.