Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 24 of 141
Found at i:7757519 original size:28 final size:28
Alignment explanation
Indices: 7757488--7757555 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
7757478 TATTTTTTTG
7757488 ATATATTTTGA-TAAATAAAAAAAATTAT
1 ATATATTTTGAGTAAAT-AAAAAAATTAT
7757516 ATATATTTT-AGTAAATAAAAAAATTAT
1 ATATATTTTGAGTAAATAAAAAAATTAT
7757543 A-ATATTTTG-GTAA
1 ATATATTTTGAGTAA
7757556 TTTTTTATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
26 11 0.29
27 13 0.34
28 14 0.37
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (28 bp):
ATATATTTTGAGTAAATAAAAAAATTAT
Found at i:7763601 original size:21 final size:21
Alignment explanation
Indices: 7763549--7763601 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
7763539 TCAAAATCAA
*
7763549 TTTAAATGTTATTCTTTTATC
1 TTTAAATATTATTCTTTTATC
* *
7763570 GTTATATTATTATTCTTTATAT-
1 TTTA-AATATTATTCTTT-TATC
7763592 TTTAAATATT
1 TTTAAATATT
7763602 TCACGAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 8 0.32
22 14 0.56
23 3 0.12
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTAAATATTATTCTTTTATC
Found at i:7763658 original size:14 final size:14
Alignment explanation
Indices: 7763639--7763668 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7763629 TGTCAAAATG
7763639 TTATAATAATCATT
1 TTATAATAATCATT
*
7763653 TTATAATAATTATT
1 TTATAATAATCATT
7763667 TT
1 TT
7763669 GATTCAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATAATAATCATT
Found at i:7771226 original size:18 final size:18
Alignment explanation
Indices: 7771203--7771238 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
7771193 CTTTTTTACT
7771203 TAAATAATTTA-AAAAATA
1 TAAAT-ATTTACAAAAATA
7771221 TAAATATTTACAAAAATA
1 TAAATATTTACAAAAATA
7771239 ATCCAGGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAATATTTACAAAAATA
Found at i:7773092 original size:14 final size:14
Alignment explanation
Indices: 7773073--7773101 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7773063 AAGTACTTAA
7773073 AACATATACAAGAT
1 AACATATACAAGAT
7773087 AACATATACAAGAT
1 AACATATACAAGAT
7773101 A
1 A
7773102 CTCTTATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (14 bp):
AACATATACAAGAT
Found at i:7776206 original size:15 final size:15
Alignment explanation
Indices: 7776182--7776211 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7776172 TCCATGTAGT
*
7776182 AGGATTTGATTTATC
1 AGGATATGATTTATC
7776197 AGGATATGATTTATC
1 AGGATATGATTTATC
7776212 CCTCCTACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (15 bp):
AGGATATGATTTATC
Found at i:7779008 original size:39 final size:39
Alignment explanation
Indices: 7778960--7779050 Score: 125
Period size: 38 Copynumber: 2.4 Consensus size: 39
7778950 AAAAAATCTA
* *
7778960 ATTTCTAAATTTATTTGCT-GATATTTTATTTTTAATCTC
1 ATTTCTAAATTTATTTG-TAAATATTTTATTTTTAATCAC
*
7778999 GTTTCTAAATTTA-TTGTAAATATTTTATTTTTAATCAC
1 ATTTCTAAATTTATTTGTAAATATTTTATTTTTAATCAC
7779037 ATTTCT-AATTTATT
1 ATTTCTAAATTTATT
7779051 AATTATTTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
37 7 0.15
38 27 0.59
39 12 0.26
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (39 bp):
ATTTCTAAATTTATTTGTAAATATTTTATTTTTAATCAC
Found at i:7782215 original size:21 final size:21
Alignment explanation
Indices: 7782191--7782231 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7782181 ACGATGTGGG
7782191 GTTTGAGGTTTAAGG-TTTATA
1 GTTTGAGGTTT-AGGATTTATA
*
7782212 GTTTGGGGTTTAGGATTTAT
1 GTTTGAGGTTTAGGATTTAT
7782232 GATTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.49
Consensus pattern (21 bp):
GTTTGAGGTTTAGGATTTATA
Found at i:7782401 original size:15 final size:16
Alignment explanation
Indices: 7782369--7782407 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
7782359 GAAATTCTAG
7782369 ATTAATATAAATGAAA
1 ATTAATATAAATGAAA
7782385 A-TAATATAAAT-ATAA
1 ATTAATATAAATGA-AA
7782400 ATTAATAT
1 ATTAATAT
7782408 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 1 0.05
15 13 0.62
16 7 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTAATATAAATGAAA
Found at i:7784841 original size:25 final size:25
Alignment explanation
Indices: 7784807--7784862 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
7784797 GTTATCATAG
*
7784807 TACATAGCTTACATAATACACAACT
1 TACATAGCTTACATAATAAACAACT
*
7784832 TACATAGCTTACATAATAAATAACT
1 TACATAGCTTACATAATAAACAACT
7784857 TACATA
1 TACATA
7784863 AAATACAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (25 bp):
TACATAGCTTACATAATAAACAACT
Found at i:7784859 original size:41 final size:41
Alignment explanation
Indices: 7784814--7784900 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 41
7784804 TAGTACATAG
* *
7784814 CTTACATAATACACAACTTACATAGCTTACATAATAAATAA
1 CTTACATAAAACACAACTTACATAGCTCACATAATAAATAA
* **
7784855 CTTACATAAAATACAACTTACATAGCTCACATAATACGTAA
1 CTTACATAAAACACAACTTACATAGCTCACATAATAAATAA
7784896 CTTAC
1 CTTAC
7784901 TTAACTTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.29
Consensus pattern (41 bp):
CTTACATAAAACACAACTTACATAGCTCACATAATAAATAA
Found at i:7784860 original size:16 final size:16
Alignment explanation
Indices: 7784839--7784878 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
7784829 ACTTACATAG
*
7784839 CTTACATAATAA-ATAA
1 CTTACATAA-AATACAA
7784855 CTTACATAAAATACAA
1 CTTACATAAAATACAA
7784871 CTTACATA
1 CTTACATA
7784879 GCTCACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (16 bp):
CTTACATAAAATACAA
Found at i:7784869 original size:25 final size:25
Alignment explanation
Indices: 7784816--7784869 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
7784806 GTACATAGCT
* ***
7784816 TACATAATACACAACTTACATAGCT
1 TACATAATAAACAACTTACATAAAA
*
7784841 TACATAATAAATAACTTACATAAAA
1 TACATAATAAACAACTTACATAAAA
7784866 TACA
1 TACA
7784870 ACTTACATAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.52, C:0.19, G:0.02, T:0.28
Consensus pattern (25 bp):
TACATAATAAACAACTTACATAAAA
Found at i:7784939 original size:25 final size:25
Alignment explanation
Indices: 7784851--7784942 Score: 78
Period size: 25 Copynumber: 3.7 Consensus size: 25
7784841 TACATAATAA
* * * *
7784851 ATAACTTACATAAAATACAACTTAC
1 ATAACTTATATAATACATAACTTAC
* * * *
7784876 ATAGCTCACATAATACGTAACTTAC
1 ATAACTTATATAATACATAACTTAC
*
7784901 TTAACTTATATAATACATAACTTAC
1 ATAACTTATATAATACATAACTTAC
*
7784926 ATAATTTACT-TAATACA
1 ATAACTTA-TATAATACA
7784943 AAAATATATA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
25 52 0.98
26 1 0.02
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (25 bp):
ATAACTTATATAATACATAACTTAC
Found at i:7790558 original size:41 final size:41
Alignment explanation
Indices: 7790503--7790581 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
7790493 NNNNNNATAC
* *
7790503 ACAACTTACATAGCTTACATACTAAATAACTTACATAAAAT
1 ACAACTTACATAGCTCACATAATAAATAACTTACATAAAAT
**
7790544 ACAACTTACATAGCTCACATAATACGTAACTTACATAA
1 ACAACTTACATAGCTCACATAATAAATAACTTACATAA
7790582 CTTATATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.28
Consensus pattern (41 bp):
ACAACTTACATAGCTCACATAATAAATAACTTACATAAAAT
Found at i:7790594 original size:16 final size:16
Alignment explanation
Indices: 7790509--7790607 Score: 67
Period size: 16 Copynumber: 6.1 Consensus size: 16
7790499 ATACACAACT
* *
7790509 TACATAGCTTACATAC
1 TACATAACTTACATAA
*
7790525 TAAATAACTTACATAA
1 TACATAACTTACATAA
* * * *
7790541 AATACAACTTACATAGC
1 TACATAACTTACATA-A
*
7790558 TCACATAA--TACGTAA
1 T-ACATAACTTACATAA
*
7790573 CTTACATAACTTATATAA
1 --TACATAACTTACATAA
7790591 TACATAACTTACATAA
1 TACATAACTTACATAA
7790607 T
1 T
7790608 TTACTTAATA
Statistics
Matches: 62, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
16 52 0.84
17 1 0.02
18 9 0.15
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.31
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:7790616 original size:25 final size:25
Alignment explanation
Indices: 7790528--7790619 Score: 87
Period size: 25 Copynumber: 3.7 Consensus size: 25
7790518 TACATACTAA
* * * *
7790528 ATAACTTACATAAAATACAACTTAC
1 ATAACTTATATAATACATAACTTAC
* * * *
7790553 ATAGCTCACATAATACGTAACTTAC
1 ATAACTTATATAATACATAACTTAC
7790578 ATAACTTATATAATACATAACTTAC
1 ATAACTTATATAATACATAACTTAC
*
7790603 ATAATTTACT-TAATACA
1 ATAACTTA-TATAATACA
7790620 GAAATATATA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 54 0.98
26 1 0.02
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (25 bp):
ATAACTTATATAATACATAACTTAC
Found at i:7793527 original size:43 final size:43
Alignment explanation
Indices: 7793465--7793691 Score: 298
Period size: 43 Copynumber: 5.3 Consensus size: 43
7793455 TCTGCCAAAA
* *
7793465 TTAGCGGCGTTTGTGGGAGAAGCGCCGCTAACGGTCTTGGTCT
1 TTAGCGGCGTTTGTAGGAGAAGCGCCGCTAAAGGTCTTGGTCT
* * *
7793508 TTAGCGGCGTTTGTAGGAGAAGTGCTGCTAAAGGTCTTGGTTT
1 TTAGCGGCGTTTGTAGGAGAAGCGCCGCTAAAGGTCTTGGTCT
** *
7793551 TTAGCGGCGTTTGTAAAAGAAGCGTCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTAGGAGAAGCGCCGCTAAAGGTCTTGGTCT
*
7793594 TTAGCGGCGTTTGT-GGA-ATTAGTGCCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTAGGAGA--AGCGCCGCTAAAGGTCTTGGTCT
* *
7793637 TTAGCGGCGTTTGTGTGGA-AAGCGCCGCTAAAGGTCTTGATCT
1 TTAGCGGCGTTTGT-AGGAGAAGCGCCGCTAAAGGTCTTGGTCT
*
7793680 TTAGCGACGTTT
1 TTAGCGGCGTTT
7793692 TTTTGTGGAA
Statistics
Matches: 162, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 156 0.96
45 4 0.02
ACGTcount: A:0.18, C:0.17, G:0.33, T:0.32
Consensus pattern (43 bp):
TTAGCGGCGTTTGTAGGAGAAGCGCCGCTAAAGGTCTTGGTCT
Found at i:7793934 original size:40 final size:40
Alignment explanation
Indices: 7793890--7793970 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
7793880 GCCTGAATGC
7793890 AAGCATTTTCATTATATTTTAGTTAGGTTTATTTAGTTTT
1 AAGCATTTTCATTATATTTTAGTTAGGTTTATTTAGTTTT
7793930 AAGCATTTTCATTATATTTTAGTTAGGTTTATTTAGTTTT
1 AAGCATTTTCATTATATTTTAGTTAGGTTTATTTAGTTTT
7793970 A
1 A
7793971 CTTACATTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.57
Consensus pattern (40 bp):
AAGCATTTTCATTATATTTTAGTTAGGTTTATTTAGTTTT
Found at i:7793949 original size:20 final size:20
Alignment explanation
Indices: 7793890--7793950 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 20
7793880 GCCTGAATGC
7793890 AAGCATTTTCATTATATTTT
1 AAGCATTTTCATTATATTTT
* *
7793910 -AGTTAGGTTT-ATT-TAGTTTT
1 AAG-CA-TTTTCATTATA-TTTT
7793930 AAGCATTTTCATTATATTTT
1 AAGCATTTTCATTATATTTT
7793950 A
1 A
7793951 GTTAGGTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
19 7 0.23
20 17 0.55
21 7 0.23
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.56
Consensus pattern (20 bp):
AAGCATTTTCATTATATTTT
Found at i:7793969 original size:20 final size:20
Alignment explanation
Indices: 7793906--7793970 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
7793896 TTTCATTATA
7793906 TTTTAGTTAGGTTTATTTAG
1 TTTTAGTTAGGTTTATTTAG
* *
7793926 TTTTAAG-CA-TTTTCATTATA-
1 TTTT-AGTTAGGTTT-ATT-TAG
7793946 TTTTAGTTAGGTTTATTTAG
1 TTTTAGTTAGGTTTATTTAG
7793966 TTTTA
1 TTTTA
7793971 CTTACATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
19 7 0.20
20 21 0.60
21 7 0.20
ACGTcount: A:0.23, C:0.03, G:0.14, T:0.60
Consensus pattern (20 bp):
TTTTAGTTAGGTTTATTTAG
Found at i:7799111 original size:14 final size:14
Alignment explanation
Indices: 7799094--7799124 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
7799084 ACATAAGCAG
7799094 TCACTAAGGTTCAC
1 TCACTAAGGTTCAC
7799108 TCACTAAGGTTCAC
1 TCACTAAGGTTCAC
7799122 TCA
1 TCA
7799125 AAGCATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (14 bp):
TCACTAAGGTTCAC
Found at i:7800353 original size:5 final size:5
Alignment explanation
Indices: 7800343--7800425 Score: 53
Period size: 5 Copynumber: 15.4 Consensus size: 5
7800333 TAAAGTGCAT
* **
7800343 AATAA AATAA AATAA AATAA TATAA GTCTGAAA AATAA AA-AA AATAA
1 AATAA AATAA AATAA AATAA AATAA -AAT--AA AATAA AATAA AATAA
7800390 CAATAAA AATAA AAGTACA AATAA AA-AA ACATAA AA
1 -AAT-AA AATAA AA-TA-A AATAA AATAA A-ATAA AA
7800426 CATAAAACTA
Statistics
Matches: 64, Mismatches: 4, Indels: 20
0.73 0.05 0.23
Matches are distributed among these distances:
4 7 0.11
5 34 0.53
6 15 0.23
7 6 0.09
8 2 0.03
ACGTcount: A:0.73, C:0.05, G:0.04, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:7808648 original size:21 final size:21
Alignment explanation
Indices: 7808624--7808669 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7808614 CTCCGAATGC
*
7808624 CCCTTCCTCCTTTC-TCTTCTT
1 CCCTTCC-CCTTCCTTCTTCTT
*
7808645 CCCTTTCCCTTCCTTCTTCTT
1 CCCTTCCCCTTCCTTCTTCTT
7808666 CCCT
1 CCCT
7808670 CATCAAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (21 bp):
CCCTTCCCCTTCCTTCTTCTT
Found at i:7809095 original size:20 final size:22
Alignment explanation
Indices: 7809051--7809104 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
7809041 GTTTTTGGAT
*
7809051 TTATTATTTATTTTTCTTATTTC
1 TTATT-TTTATTTTTCTTATATC
7809074 TTATTTTTATTTTTC-TA-ATC
1 TTATTTTTATTTTTCTTATATC
*
7809094 TTTTTTTTATT
1 TTATTTTTATT
7809105 ATTCCTATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 12 0.41
21 2 0.07
22 10 0.34
23 5 0.17
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (22 bp):
TTATTTTTATTTTTCTTATATC
Found at i:7809249 original size:26 final size:26
Alignment explanation
Indices: 7809220--7809284 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
7809210 TTTATTTTTA
7809220 TTTTTAGTATTATTCA-TTGTTGGTTC
1 TTTTTAGTATTATTCAGTT-TTGGTTC
* * *
7809246 TTTTTATTATTACTCAGTTTTGTTTC
1 TTTTTAGTATTATTCAGTTTTGGTTC
*
7809272 -TTTTGGTATTATT
1 TTTTTAGTATTATT
7809285 TTTCTAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
25 10 0.31
26 20 0.62
27 2 0.06
ACGTcount: A:0.15, C:0.08, G:0.12, T:0.65
Consensus pattern (26 bp):
TTTTTAGTATTATTCAGTTTTGGTTC
Found at i:7817080 original size:20 final size:20
Alignment explanation
Indices: 7817052--7817090 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7817042 GCTACTCATA
*
7817052 TTTTTAAAA-ACTTATCAGAG
1 TTTTCAAAACACTTA-CAGAG
7817072 TTTTCAAAACACTTACAGA
1 TTTTCAAAACACTTACAGA
7817091 ATCGGTGCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (20 bp):
TTTTCAAAACACTTACAGAG
Found at i:7820567 original size:19 final size:19
Alignment explanation
Indices: 7820545--7820586 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
7820535 TTCTTTTCAG
7820545 TTTCAGTTTCATTTTTAA-T
1 TTTCAGTTTC-TTTTTAAGT
**
7820564 TTTCTTTTTCTTTTTAAGT
1 TTTCAGTTTCTTTTTAAGT
7820583 TTTC
1 TTTC
7820587 TTTTTTTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.69
Consensus pattern (19 bp):
TTTCAGTTTCTTTTTAAGT
Found at i:7820587 original size:19 final size:19
Alignment explanation
Indices: 7820551--7820591 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7820541 TCAGTTTCAG
7820551 TTTCATTTTTAATTTTCTT
1 TTTCATTTTTAATTTTCTT
7820570 TTTC-TTTTTAAGTTTTCTT
1 TTTCATTTTTAA-TTTTCTT
7820589 TTT
1 TTT
7820592 TTAGTTAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.12, C:0.10, G:0.02, T:0.76
Consensus pattern (19 bp):
TTTCATTTTTAATTTTCTT
Found at i:7828815 original size:27 final size:27
Alignment explanation
Indices: 7828785--7828850 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
7828775 CCTCACGTGG
7828785 TAAAATGACTGTTATGCCCCTATGCTA
1 TAAAATGACTGTTATGCCCCTATGCTA
* * * *
7828812 TAAAATGACTATTATTCCCTTATGTTA
1 TAAAATGACTGTTATGCCCCTATGCTA
7828839 TAAAATGACTGT
1 TAAAATGACTGT
7828851 ATGATTTATG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (27 bp):
TAAAATGACTGTTATGCCCCTATGCTA
Found at i:7836434 original size:26 final size:27
Alignment explanation
Indices: 7836297--7836419 Score: 178
Period size: 27 Copynumber: 4.6 Consensus size: 27
7836287 CCCTAAACTA
* *
7836297 TTATAAAATGACTATTATG-CCCTCACG
1 TTATAAAATGACTGTTATGCCCCT-ATG
7836324 -TAGTAAAATGACTGTTATGCCCCTATG
1 TTA-TAAAATGACTGTTATGCCCCTATG
*
7836351 TTATAAAATAACTGTTATGCCCCTATG
1 TTATAAAATGACTGTTATGCCCCTATG
*
7836378 TTATAAAATGACAGTTATGCCCCTATG
1 TTATAAAATGACTGTTATGCCCCTATG
7836405 TTATAAAATGACTGT
1 TTATAAAATGACTGT
7836420 ATGATTTTAT
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
26 2 0.02
27 79 0.91
28 6 0.07
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (27 bp):
TTATAAAATGACTGTTATGCCCCTATG
Found at i:7838735 original size:24 final size:26
Alignment explanation
Indices: 7838702--7838754 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
7838692 TTTAATTATA
7838702 ATTTAATATAAACACAT-ATAATATT
1 ATTTAATATAAACACATAATAATATT
*
7838727 ATTT-ATATAAACATATAAATAATATT
1 ATTTAATATAAACACAT-AATAATATT
7838753 AT
1 AT
7838755 ACTTTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 11 0.44
25 4 0.16
26 10 0.40
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTTAATATAAACACATAATAATATT
Found at i:7859132 original size:48 final size:49
Alignment explanation
Indices: 7859041--7859133 Score: 143
Period size: 48 Copynumber: 1.9 Consensus size: 49
7859031 TTTTGGAGGC
* *
7859041 ACCAACTTTCAATGAATTATTTTTTAGTGTTAATTCTAGATGTGAAGGT
1 ACCAACTTTCAATGAATTATCTTTTAGTGTTAACTCTAGATGTGAAGGT
* *
7859090 ACCAACTTTCAATGGATTA-CTTTTAGTGTTAACTCTATATGTGA
1 ACCAACTTTCAATGAATTATCTTTTAGTGTTAACTCTAGATGTGA
7859134 CCACACTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 22 0.55
49 18 0.45
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (49 bp):
ACCAACTTTCAATGAATTATCTTTTAGTGTTAACTCTAGATGTGAAGGT
Found at i:7861708 original size:26 final size:27
Alignment explanation
Indices: 7861656--7861781 Score: 78
Period size: 27 Copynumber: 4.7 Consensus size: 27
7861646 AGACTATCCA
*
7861656 TTCATAATTCACCATAAAAGCTTTTCT
1 TTCATAATTCACCACAAAAGCTTTTCT
*
7861683 TTCATGATTCACCAC-AAAGAC-TTTCTT
1 TTCATAATTCACCACAAAAG-CTTTTC-T
* * * *
7861710 TTCATATTTCGCTACAAAGGCTTTTCT
1 TTCATAATTCACCACAAAAGCTTTTCT
* * *** * *
7861737 CTT-GTATTTTTTCACAAAGGCTTTCCT
1 -TTCATAATTCACCACAAAAGCTTTTCT
*
7861764 TTCATATTTCACCACAAA
1 TTCATAATTCACCACAAA
7861782 GAATTTCCTT
Statistics
Matches: 76, Mismatches: 17, Indels: 12
0.72 0.16 0.11
Matches are distributed among these distances:
26 10 0.13
27 57 0.75
28 9 0.12
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (27 bp):
TTCATAATTCACCACAAAAGCTTTTCT
Found at i:7863137 original size:30 final size:30
Alignment explanation
Indices: 7863065--7863137 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
7863055 TGCAACTAAG
**
7863065 TTAGGGGCTTAATTAAAATTTTTAAAAATT
1 TTAGGGGCTTAATTAAAATCCTTAAAAATT
** * * *
7863095 TTAATGGTTTAATTAAAATCCTTAGAACTT
1 TTAGGGGCTTAATTAAAATCCTTAAAAATT
7863125 TTAGGGGCTTAAT
1 TTAGGGGCTTAAT
7863138 GAGGATCTCC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (30 bp):
TTAGGGGCTTAATTAAAATCCTTAAAAATT
Found at i:7863255 original size:59 final size:62
Alignment explanation
Indices: 7863134--7863256 Score: 164
Period size: 59 Copynumber: 2.0 Consensus size: 62
7863124 TTTAGGGGCT
*
7863134 TAATGAGGATCTCCAAAAAATTTGGAGAGTCTAATTAAAATTATTTTAAAAATTTTAGAAGGC
1 TAATGAGAATCTCCAAAAAATTTGGAGAGTCTAATTAAAA-TATTTTAAAAATTTTAGAAGGC
* * *
7863197 TAATGAGAATTTCTAAAAAA-TT-GAGGGTCTAATTAAAA-ATTTTAAAAATTATTA-AAGGC
1 TAATGAGAATCTCCAAAAAATTTGGAGAGTCTAATTAAAATATTTTAAAAATT-TTAGAAGGC
7863256 T
1 T
7863257 TAACGATAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
59 18 0.33
60 3 0.05
61 15 0.27
62 2 0.04
63 17 0.31
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.34
Consensus pattern (62 bp):
TAATGAGAATCTCCAAAAAATTTGGAGAGTCTAATTAAAATATTTTAAAAATTTTAGAAGGC
Found at i:7866797 original size:16 final size:16
Alignment explanation
Indices: 7866776--7866806 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7866766 TTTGGTTCGC
7866776 TGTAATAGAATAGAGG
1 TGTAATAGAATAGAGG
*
7866792 TGTAATGGAATAGAG
1 TGTAATAGAATAGAG
7866807 TTATTATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.32, T:0.26
Consensus pattern (16 bp):
TGTAATAGAATAGAGG
Found at i:7867225 original size:22 final size:22
Alignment explanation
Indices: 7867200--7867242 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
7867190 AAAATATTTT
7867200 TTTATATGTCATTAATAATTAA
1 TTTATATGTCATTAATAATTAA
7867222 TTTATATGTCATTAATAATTA
1 TTTATATGTCATTAATAATTA
7867243 TTTTTTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
TTTATATGTCATTAATAATTAA
Found at i:7867399 original size:26 final size:26
Alignment explanation
Indices: 7867369--7867451 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
7867359 TTTTTGTAGG
7867369 TTTAATTATAATTTTTAATCAAACAA
1 TTTAATTATAATTTTTAATCAAACAA
* * * * *
7867395 TTTAA--GTAA-TATAATATAAAACATTG
1 TTTAATTATAATTTTTA-ATCAAACA--A
7867421 TTTAATTATAATTTTTAATCAAACAA
1 TTTAATTATAATTTTTAATCAAACAA
7867447 TTTAA
1 TTTAA
7867452 GTAATATAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
23 3 0.07
24 10 0.24
26 15 0.37
28 10 0.24
29 3 0.07
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (26 bp):
TTTAATTATAATTTTTAATCAAACAA
Found at i:7867408 original size:29 final size:29
Alignment explanation
Indices: 7867375--7867460 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 29
7867365 TAGGTTTAAT
7867375 TATAATTTTTAATCAAACAATTTAAGTAA
1 TATAATTTTTAATCAAACAATTTAAGTAA
* *
7867404 TATAA----T-ATAAAAC-ATTGT--TTAA
1 TATAATTTTTAATCAAACAATT-TAAGTAA
7867426 TTATAATTTTTAATCAAACAATTTAAGTAA
1 -TATAATTTTTAATCAAACAATTTAAGTAA
7867456 TATAA
1 TATAA
7867461 AACATTGTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 20
0.64 0.06 0.30
Matches are distributed among these distances:
22 3 0.07
23 8 0.19
24 7 0.16
25 1 0.02
27 1 0.02
28 7 0.16
29 13 0.30
30 3 0.07
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (29 bp):
TATAATTTTTAATCAAACAATTTAAGTAA
Found at i:7867457 original size:47 final size:48
Alignment explanation
Indices: 7867368--7867470 Score: 163
Period size: 52 Copynumber: 2.1 Consensus size: 48
7867358 ATTTTTGTAG
7867368 GTTTAATTATAATTTTTAATCAAACAATTTAAGTAATATAATATAAAACATT
1 GTTTAATTATAATTTTTAATCAAACAATTTAAG----ATAATATAAAACATT
7867420 GTTTAATTATAATTTTTAATCAAACAATTTAAG-TAATATAAAACATT
1 GTTTAATTATAATTTTTAATCAAACAATTTAAGATAATATAAAACATT
7867467 GTTT
1 GTTT
7867471 GAAGACCAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
47 18 0.35
52 33 0.65
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.44
Consensus pattern (48 bp):
GTTTAATTATAATTTTTAATCAAACAATTTAAGATAATATAAAACATT
Found at i:7879194 original size:24 final size:24
Alignment explanation
Indices: 7879162--7879211 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
7879152 AAAGGTACAA
*
7879162 TGGATTGAACTTTGAAGATCACAG
1 TGGATTGAACCTTGAAGATCACAG
*
7879186 TGGATTGAACCTTGAAGATTACAG
1 TGGATTGAACCTTGAAGATCACAG
7879210 TG
1 TG
7879212 CGGGCAATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (24 bp):
TGGATTGAACCTTGAAGATCACAG
Found at i:7880003 original size:45 final size:45
Alignment explanation
Indices: 7879517--7880009 Score: 169
Period size: 44 Copynumber: 11.1 Consensus size: 45
7879507 ATAGATTAAA
* * * *
7879517 GAAGATAGCAAATCTTGTCTTTCTGTACTGGCAGCGAAGCAGA-T
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGACT
* * * * * * *
7879561 CGAAGACACCAG--CCTGACCTCTCTG-AGTTTGCAGCGGAGCAGACT
1 -GAAGATAACAGATCTTGTCTTC-CTGTA-TTGGCAGCGAAGCAGACT
** * *
7879606 GAAGATAGGAGATCTTGTCTTCCTGTACTGGCAGCAAAGCAGA-T
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGACT
* * * ** * * *
7879650 CGAAGACACCAG-CCTCATCTTCTTG-AGTTTGCAGCGGAGCAGACT
1 -GAAGATAACAGATCTTGTCTTCCTGTA-TTGGCAGCGAAGCAGACT
* * ** * *
7879695 GAAGATAACATATCTTGTCTTCCTATGCTAGTAGCGAAGCAGA-T
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGACT
* * * * * *
7879739 CGAAGACACCAG--CCTGACCTCCATG-AGTTTGCAGCGAAGCAGACT
1 -GAAGATAACAGATCTTGTCTTCC-TGTA-TTGGCAGCGAAGCAGACT
* ** * *
7879784 AAAGATAGGAGATCTTGTCTTCCTGTACTAGCAGCGAAGCAGA-T
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGACT
* * * * ** * * *
7879828 CGAAAACACCAG--CCTCACCTCTCTAAGT-TT-ACAGCGGAGCAGACT
1 -GAAGATAACAGATCTTGTCTTC-CT--GTATTGGCAGCGAAGCAGACT
* *
7879873 GAATATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGA-T
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGACT
* * * * * * *
7879917 CGAAGACACCAG-CCTCGCCTTCCTG-AGTTTGCAGCGGAGCAGACT
1 -GAAGATAACAGATCTTGTCTTCCTGTA-TTGGCAGCGAAGCAGACT
* * * *
7879962 GAAGATAACAGATCTTGTTTTCCTGTACTGGCAGTGAAGCAGATT
1 GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGACT
7880007 GAA
1 GAA
7880010 AACACCAGTC
Statistics
Matches: 312, Mismatches: 104, Indels: 64
0.65 0.22 0.13
Matches are distributed among these distances:
43 22 0.07
44 134 0.43
45 133 0.43
46 23 0.07
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (45 bp):
GAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGACT
Found at i:7880003 original size:267 final size:267
Alignment explanation
Indices: 7879518--7880017 Score: 784
Period size: 267 Copynumber: 1.9 Consensus size: 267
7879508 TAGATTAAAG
* * * *
7879518 AAGATAGCAAATCTTGTCTTTCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTGACCTCT
1 AAGATAGCAAATCTTGTCTTCCTGTACTAGCAGCGAAGCAGATCGAAAACACCAGCCTCACCTCT
* * *
7879583 CTGAGTTTGCAGCGGAGCAGACTGAAGATAGGAGATCTTGTCTTCCTGTACTGGCAGCAAAGCAG
66 CTAAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCAAAGCAG
* * *
7879648 ATCGAAGACACCAGCCTCATCTTCTTGAGTTTGCAGCGGAGCAGACTGAAGATAACATATCTTGT
131 ATCGAAGACACCAGCCTCACCTTCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGT
* * *
7879713 CTTCCTATGCTAGTAGCGAAGCAGATCGAAGACACCAGCCTGACCTCCATGAGTTTGCAGCGAAG
196 CTTCCTATACTAGCAGCGAAGCAGATCGAAAACACCAGCCTGACCTCCATGAGTTTGCAGCGAAG
7879778 CAGACTA
261 CAGACTA
* *
7879785 AAGATAGGAGATCTTGTCTTCCTGTACTAGCAGCGAAGCAGATCGAAAACACCAGCCTCACCTCT
1 AAGATAGCAAATCTTGTCTTCCTGTACTAGCAGCGAAGCAGATCGAAAACACCAGCCTCACCTCT
* * *
7879850 CTAAGTTTACAGCGGAGCAGACTGAATATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAG
66 CTAAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCAAAGCAG
*
7879915 ATCGAAGACACCAGCCTCGCCTTCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGT
131 ATCGAAGACACCAGCCTCACCTTCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGT
* * * * *
7879980 TTTCCTGTACTGGCAGTGAAGCAGATTGAAAACACCAG
196 CTTCCTATACTAGCAGCGAAGCAGATCGAAAACACCAG
7880018 TCTTACCTTT
Statistics
Matches: 209, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
267 209 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (267 bp):
AAGATAGCAAATCTTGTCTTCCTGTACTAGCAGCGAAGCAGATCGAAAACACCAGCCTCACCTCT
CTAAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCAAAGCAG
ATCGAAGACACCAGCCTCACCTTCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGT
CTTCCTATACTAGCAGCGAAGCAGATCGAAAACACCAGCCTGACCTCCATGAGTTTGCAGCGAAG
CAGACTA
Found at i:7880056 original size:89 final size:89
Alignment explanation
Indices: 7879517--7880039 Score: 699
Period size: 89 Copynumber: 5.9 Consensus size: 89
7879507 ATAGATTAAA
* * * *
7879517 GAAGATAGCAAATCTTGTCTTTCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTGACCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTCACCTT
7879582 TCTGAGTTTGCAGCGGAGCAGACT
66 TCTGAGTTTGCAGCGGAGCAGACT
* * *
7879606 GAAGATAGGAGATCTTGTCTTCCTGTACTGGCAGCAAAGCAGATCGAAGACACCAGCCTCATC-T
1 GAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTCACCTT
7879670 TCTTGAGTTTGCAGCGGAGCAGACT
66 TC-TGAGTTTGCAGCGGAGCAGACT
* * * * * * *
7879695 GAAGATAACATATCTTGTCTTCCTATGCTAGTAGCGAAGCAGATCGAAGACACCAGCCTGACC-T
1 GAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTCACCTT
* *
7879759 CCATGAGTTTGCAGCGAAGCAGACT
66 TC-TGAGTTTGCAGCGGAGCAGACT
* * * * *
7879784 AAAGATAGGAGATCTTGTCTTCCTGTACTAGCAGCGAAGCAGATCGAAAACACCAGCCTCACCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTCACCTT
* *
7879849 TCTAAGTTTACAGCGGAGCAGACT
66 TCTGAGTTTGCAGCGGAGCAGACT
* * *
7879873 GAATATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTCGCCTT
1 GAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTCACCTT
*
7879938 CCTGAGTTTGCAGCGGAGCAGACT
66 TCTGAGTTTGCAGCGGAGCAGACT
* * * * * * *
7879962 GAAGATAACAGATCTTGTTTTCCTGTACTGGCAGTGAAGCAGATTGAAAACACCAGTCTTACCTT
1 GAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTCACCTT
*
7880027 TCTAAGTTTGCAG
66 TCTGAGTTTGCAG
7880040 TAGAGTAGGT
Statistics
Matches: 375, Mismatches: 57, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
88 2 0.01
89 372 0.99
90 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (89 bp):
GAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGCAGATCGAAGACACCAGCCTCACCTT
TCTGAGTTTGCAGCGGAGCAGACT
Found at i:7882214 original size:4 final size:4
Alignment explanation
Indices: 7882198--7882228 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
7882188 AATATATTTT
7882198 TTTC TTT- TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
7882229 AATAATCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:7890736 original size:21 final size:21
Alignment explanation
Indices: 7890712--7890759 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
7890702 CGACTGTGGC
* *
7890712 GGAGGACTAGCAGCTGGGGGT
1 GGAGGACTAACAGCTGAGGGT
*
7890733 GGAGGACTAACAGGTGAGGGT
1 GGAGGACTAACAGCTGAGGGT
7890754 GGAGGA
1 GGAGGA
7890760 GACAAGGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.10, G:0.52, T:0.12
Consensus pattern (21 bp):
GGAGGACTAACAGCTGAGGGT
Found at i:7912961 original size:20 final size:20
Alignment explanation
Indices: 7912931--7912981 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
7912921 ATCCACATAT
*
7912931 AATTCATAAAAAT-TTAAAA
1 AATTAATAAAAATATTAAAA
7912950 ATATTAATAAAAATATTAAAA
1 A-ATTAATAAAAATATTAAAA
7912971 AATTAA-AAAAA
1 AATTAATAAAAA
7912982 GTTCATAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 6 0.21
20 16 0.55
21 7 0.24
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AATTAATAAAAATATTAAAA
Found at i:7915740 original size:21 final size:21
Alignment explanation
Indices: 7915716--7915763 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
7915706 CGACTGTGGC
* *
7915716 GGAGGACTAGCAGCTGGGGGT
1 GGAGGACTAACAGCTGAGGGT
*
7915737 GGAGGACTAACAGGTGAGGGT
1 GGAGGACTAACAGCTGAGGGT
7915758 GGAGGA
1 GGAGGA
7915764 TATAAGGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.10, G:0.52, T:0.12
Consensus pattern (21 bp):
GGAGGACTAACAGCTGAGGGT
Found at i:7916989 original size:24 final size:24
Alignment explanation
Indices: 7916954--7917005 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
7916944 ATTGTGACCC
7916954 TTTTTTTAATTTGTGAGATT-T-AAA
1 TTTTTTTAATTT-T-AGATTATCAAA
*
7916978 TTTTTTTTATTTTAGATTATCAAA
1 TTTTTTTAATTTTAGATTATCAAA
7917002 TTTT
1 TTTT
7917006 AAAATTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 5 0.20
23 2 0.08
24 18 0.72
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (24 bp):
TTTTTTTAATTTTAGATTATCAAA
Found at i:7927638 original size:27 final size:27
Alignment explanation
Indices: 7927608--7927746 Score: 93
Period size: 27 Copynumber: 5.1 Consensus size: 27
7927598 AGGCTATCCA
* *
7927608 TTCATAATTCACCATAAAG-CTTTTTCT
1 TTCATAATTCACCACAAAGACTTTCT-T
*
7927635 TTCATGATTCACCACAAAGACTTTCTT
1 TTCATAATTCACCACAAAGACTTTCTT
* * * *
7927662 TTCATATTTGACTACAAAAGGCTTT-TCT
1 TTCATAATTCACCAC-AAAGACTTTCT-T
* * *** * *
7927690 CTCATATTTTGTCACAAAGGCTTTCCT
1 TTCATAATTCACCACAAAGACTTTCTT
* *
7927717 TTCATATTTCACCACAAAGACTTTCAT
1 TTCATAATTCACCACAAAGACTTTCTT
7927744 TTC
1 TTC
7927747 CTGACGTGTT
Statistics
Matches: 88, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
27 64 0.73
28 24 0.27
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (27 bp):
TTCATAATTCACCACAAAGACTTTCTT
Found at i:7928449 original size:17 final size:16
Alignment explanation
Indices: 7928427--7928461 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7928417 ATAAAATTTT
*
7928427 AAAAAAACAGAAAATAG
1 AAAAAAAAAGAAAA-AG
7928444 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
7928460 AA
1 AA
7928462 TACAAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.83, C:0.03, G:0.11, T:0.03
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:7930170 original size:19 final size:19
Alignment explanation
Indices: 7930122--7930168 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
7930112 TGACAACCCA
7930122 TTTTCAAAATTTTCAATTT
1 TTTTCAAAATTTTCAATTT
**
7930141 TTTTCAAAATTTTCTGTTT
1 TTTTCAAAATTTTCAATTT
7930160 TGTTTCAAA
1 T-TTTCAAA
7930169 TTGATCCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.11, G:0.04, T:0.57
Consensus pattern (19 bp):
TTTTCAAAATTTTCAATTT
Found at i:7940554 original size:12 final size:12
Alignment explanation
Indices: 7940539--7940570 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7940529 TAATGAAAAT
7940539 ATAAATAAAGAA
1 ATAAATAAAGAA
7940551 ATAAATAAAGAA
1 ATAAATAAAGAA
*
7940563 ATGAATAA
1 ATAAATAA
7940571 GGCTATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (12 bp):
ATAAATAAAGAA
Found at i:7940645 original size:16 final size:16
Alignment explanation
Indices: 7940624--7940662 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7940614 AATTATGGAG
*
7940624 ATATATGAAAGCATGT
1 ATATATAAAAGCATGT
*
7940640 ATATATAAAAGTATGT
1 ATATATAAAAGCATGT
7940656 ATATATA
1 ATATATA
7940663 TGTATACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (16 bp):
ATATATAAAAGCATGT
Found at i:7942174 original size:21 final size:21
Alignment explanation
Indices: 7942145--7942188 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
7942135 GGTTGGTTGG
* *
7942145 TTTAGGGTTAATTGGGTCTGGT
1 TTTAGGGTT-AGTGGGCCTGGT
7942167 TTTA-GGTTAGTGGGCCTGGT
1 TTTAGGGTTAGTGGGCCTGGT
7942187 TT
1 TT
7942189 GATTTGGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 4 0.20
22 4 0.20
ACGTcount: A:0.11, C:0.07, G:0.36, T:0.45
Consensus pattern (21 bp):
TTTAGGGTTAGTGGGCCTGGT
Found at i:7942976 original size:172 final size:172
Alignment explanation
Indices: 7942686--7943015 Score: 414
Period size: 172 Copynumber: 1.9 Consensus size: 172
7942676 CAATCTTTTA
* * * *
7942686 ATTGCAATGTTGGGAAAGCAAGATTCGCCATTGTGGCTTCAATCTATTCCATTACATCGCCAGGG
1 ATTGCAATGTCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCACCAGGG
* * * *
7942751 AAGTAAGATTTGCTGTTGTAGCTTCAATCTATTTGACTACAATGTCGGGGAAGCGAGATTCAC-C
66 AAGTAAGATTCGCTGTTGTAGCCTCAATCTATTTAACTACAATGTCAGGGAAGCGAGATTC-CTC
*
7942815 ATCGTAGCTTCAATTTGTTCCACTGCACCCCTAGAGAAATGAG
130 ATCGTAGCTTCAATCTGTTCCACTGCACCCCTAGAGAAATGAG
* * * * * *
7942858 ATTGCAATGTCGGGGAAGGAAGATTTGCCGTTGTAGCTTCAATCTATTCCACTGCATCACCTGGG
1 ATTGCAATGTCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCACCAGGG
* * * *
7942923 AAGGTAAGATTCG-TCGTTGTGGCCTCAATCT-TTTAATTGCAATGTTAGGGAAGCGAGATTCCT
66 AA-GTAAGATTCGCT-GTTGTAGCCTCAATCTATTTAACTACAATGTCAGGGAAGCGAGATTCCT
* * *
7942986 CGTTGTGGCTTCAATCTGTTCCACTGCACC
129 CATCGTAGCTTCAATCTGTTCCACTGCACC
7943016 ACCTGGGAAA
Statistics
Matches: 133, Mismatches: 22, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
171 1 0.01
172 109 0.82
173 23 0.17
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (172 bp):
ATTGCAATGTCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCACCAGGG
AAGTAAGATTCGCTGTTGTAGCCTCAATCTATTTAACTACAATGTCAGGGAAGCGAGATTCCTCA
TCGTAGCTTCAATCTGTTCCACTGCACCCCTAGAGAAATGAG
Found at i:7942991 original size:49 final size:49
Alignment explanation
Indices: 7942919--7943561 Score: 269
Period size: 49 Copynumber: 12.9 Consensus size: 49
7942909 CTGCATCACC
*
7942919 TGGGAAGGTAAGATTC-GTCGTTGTGGCCTCAATCTTTTAATTGCAATGT
1 TGGGAA-GTAAGATTCACTCGTTGTGGCCTCAATCTTTTAATTGCAATGT
** * ** * **
7942968 TAGGGAAGCGAGATTC-CTCGTTGTGGCTTCAATCTGTTCCACTGCACCA-CC
1 T-GGGAAGTAAGATTCACTCGTTGTGGCCTCAATCT-TTTAATTGCA--ATGT
*
7943019 TGGGAAAGTAAGATTCAC-CATTGTGGCCTCAATCTTTTAATTGCAATGT
1 TGGG-AAGTAAGATTCACTCGTTGTGGCCTCAATCTTTTAATTGCAATGT
* * * * * * *
7943068 TGGGGAAGTAAGATTCACT-ATTGTAGCTTCAATCTGTTCAACTGCACTGCC
1 T-GGGAAGTAAGATTCACTCGTTGTGGCCTCAATCT-TTTAATTGCAATG-T
* * * *
7943119 TGTGAAATAAGATTCGC-CGTTGTGGCCTCAATCCTTTAATTGCAATGT
1 TGGGAAGTAAGATTCACTCGTTGTGGCCTCAATCTTTTAATTGCAATGT
* * * * * * * * * *
7943167 CAGGGAAGCAAGATTCGCT-GTTGTAGCTTCAATCTGTTCAACTGTACTGCC
1 -TGGGAAGTAAGATTCACTCGTTGTGGCCTCAATCT-TTTAATTGCAATG-T
* * * ** *
7943218 TGGGAAATAAGATTCGC-CATTGTGGTTTCAATCTTTTAATTACAATGT
1 TGGGAAGTAAGATTCACTCGTTGTGGCCTCAATCTTTTAATTGCAATGT
* * * * * * * * * *
7943266 CGGGGAAGCAAGATTCGCT-ATTTTAGCTTCAATCTGTTCAATTGCACTGCC
1 -TGGGAAGTAAGATTCACTCGTTGTGGCCTCAATCT-TTTAATTGCAATG-T
* * * * *
7943317 TGGGAAATAAGATTCGC-CGTTGTGGCTTCAATCTTTTGATTGCAATAT
1 TGGGAAGTAAGATTCACTCGTTGTGGCCTCAATCTTTTAATTGCAATGT
* ** * * * * **
7943365 CGGGGAAGCGAGATTCGC-CGTTGTGGCTTCAAT-TTGTTCCACTGCACCA-CC
1 -TGGGAAGTAAGATTCACTCGTTGTGGCCTCAATCTT-TT-AATTGCA--ATGT
*
7943416 TGGGAAAGTAAGATTCGC-CGTTGTGGCCTCAATCTTTTAATTGCAATGT
1 TGGG-AAGTAAGATTCACTCGTTGTGGCCTCAATCTTTTAATTGCAATGT
** * * * * *
7943465 CAAGGAA-TCAAGATTCACT-GTTGTAGCTTCAATCTGTTCAACTGC-ATCGCC
1 -TGGGAAGT-AAGATTCACTCGTTGTGGCCTCAATCT-TTTAATTGCAAT-G-T
* * *
7943516 TAGGAAGTAAGATTCAC-CGTTGTGGCTTTAATCTTTTGAATTGCAA
1 TGGGAAGTAAGATTCACTCGTTGTGGCCTCAATCTTTT-AATTGCAA
7943562 ACTATGGTTT
Statistics
Matches: 445, Mismatches: 109, Indels: 78
0.70 0.17 0.12
Matches are distributed among these distances:
48 5 0.01
49 191 0.43
50 189 0.42
51 55 0.12
52 5 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (49 bp):
TGGGAAGTAAGATTCACTCGTTGTGGCCTCAATCTTTTAATTGCAATGT
Found at i:7943031 original size:100 final size:100
Alignment explanation
Indices: 7942858--7943561 Score: 869
Period size: 99 Copynumber: 7.1 Consensus size: 100
7942848 GAGAAATGAG
* * * * * * * *
7942858 ATTGCAATGTCGGGGAAGGAAGATTTGCCGTTGTAGCTTCAATCTATTCCACTGCATCACCTGGG
1 ATTGCAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCACCGCCTGGG
* *
7942923 AAGGTAAGATTCGTCGTTGTGGCCTCAATCTTTTA
66 AAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
* * * * *
7942958 ATTGCAATGTTAGGGAAGCGAGATTC-CTCGTTGTGGCTTCAATCTGTTCCACTGCACCACCTGG
1 ATTGCAATGTCAGGGAAGCAAGATTCGCT-GTTGTAGCTTCAATCTGTTCAACTGCACCGCCTGG
* *
7943022 GAAAGTAAGATTCACCATTGTGGCCTCAATCTTTTA
65 GAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
** * * * * *
7943058 ATTGCAATGTTGGGGAAGTAAGATTCACTATTGTAGCTTCAATCTGTTCAACTGCACTGCCTGTG
1 ATTGCAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCACCGCCTGGG
*
7943123 AAA-TAAGATTCGCCGTTGTGGCCTCAATCCTTTA
66 AAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
* *
7943157 ATTGCAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGTACTGCCTGGG
1 ATTGCAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCACCGCCTGGG
* **
7943222 AAA-TAAGATTCGCCATTGTGGTTTCAATCTTTTA
66 AAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
* * * * * *
7943256 ATTACAATGTCGGGGAAGCAAGATTCGCTATTTTAGCTTCAATCTGTTCAATTGCACTGCCTGGG
1 ATTGCAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCACCGCCTGGG
* *
7943321 AAA-TAAGATTCGCCGTTGTGGCTTCAATCTTTTG
66 AAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
* * * * * * * *
7943355 ATTGCAATATCGGGGAAGCGAGATTCGCCGTTGTGGCTTCAATTTGTTCCACTGCACCACCTGGG
1 ATTGCAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCACCGCCTGGG
7943420 AAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
66 AAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
* * * * *
7943455 ATTGCAATGTCAAGGAATCAAGATTCACTGTTGTAGCTTCAATCTGTTCAACTGCATCGCCTAGG
1 ATTGCAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCACCGCCTGGG
* * *
7943520 -AAGTAAGATTCACCGTTGTGGCTTTAATCTTTTGA
66 AAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTT-A
7943555 ATTGCAA
1 ATTGCAA
7943562 ACTATGGTTT
Statistics
Matches: 525, Mismatches: 75, Indels: 8
0.86 0.12 0.01
Matches are distributed among these distances:
99 293 0.56
100 230 0.44
101 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (100 bp):
ATTGCAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCACCGCCTGGG
AAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTA
Found at i:7943248 original size:50 final size:50
Alignment explanation
Indices: 7942988--7943549 Score: 359
Period size: 50 Copynumber: 11.3 Consensus size: 50
7942978 AGATTCCTCG
* ** *
7942988 TTGTGGCTTCAATCTGTTCCACTGCACCACCTGGGAAAGTAAGATTCACCA
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAA-TAAGATTCGCCA
* * * * * * * *
7943039 TTGTGGCCTCAATCT-TTTAATTGCAATG-TTGGGGAAGTAAGATTCACTA
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCT-GGGAAATAAGATTCGCCA
* * *
7943088 TTGTAGCTTCAATCTGTTCAACTGCACTGCCTGTGAAATAAGATTCGCCG
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCGCCA
* * * * * ** **
7943138 TTGTGGCCTCAATCCT-TT-AATTGCAATGTCAGGGAAGCAAGATTCGCTG
1 TTGTGGCTTCAAT-CTGTTCAACTGCACTGCCTGGGAAATAAGATTCGCCA
* *
7943187 TTGTAGCTTCAATCTGTTCAACTGTACTGCCTGGGAAATAAGATTCGCCA
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCGCCA
* * * * * * * ** *
7943237 TTGTGGTTTCAATCT-TTTAATTACAATGTCGGGGAAGCAAGATTCGCTA
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCGCCA
* * * *
7943286 TTTTAGCTTCAATCTGTTCAATTGCACTGCCTGGGAAATAAGATTCGCCG
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCGCCA
** * * ** * *** *
7943336 TTGTGGCTTCAATCT-TTTGATTGCAATATCGGGGAAGCGAGATTCGCCG
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCGCCA
* * ** *
7943385 TTGTGGCTTCAATTTGTTCCACTGCACCACCTGGGAAAGTAAGATTCGCCG
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAA-TAAGATTCGCCA
* * * * * ** * **
7943436 TTGTGGCCTCAATCT-TTTAATTGCAATGTCAAGG-AATCAAGATTCACTG
1 TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAAT-AAGATTCGCCA
* * * * *
7943485 TTGTAGCTTCAATCTGTTCAACTGCA-TCGCCTAGGAAGTAAGATTCACCG
1 TTGTGGCTTCAATCTGTTCAACTGCACT-GCCTGGGAAATAAGATTCGCCA
*
7943535 TTGTGGCTTTAATCT
1 TTGTGGCTTCAATCT
7943550 TTTGAATTGC
Statistics
Matches: 387, Mismatches: 111, Indels: 27
0.74 0.21 0.05
Matches are distributed among these distances:
48 3 0.01
49 161 0.42
50 181 0.47
51 42 0.11
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.33
Consensus pattern (50 bp):
TTGTGGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCGCCA
Found at i:7944733 original size:21 final size:21
Alignment explanation
Indices: 7944707--7944753 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7944697 GGTATAGCAA
7944707 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** *
7944728 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
7944749 GATCA
1 GATCA
7944754 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.11, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:7944858 original size:15 final size:14
Alignment explanation
Indices: 7944837--7944887 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
7944827 TTAGCCTCTC
7944837 CATTTTT-ACTTTTT
1 CATTTTTCA-TTTTT
7944851 CAATTTTTCATTTTT
1 C-ATTTTTCATTTTT
**
7944866 CATTTTTTTTATTTT
1 CATTTTTCAT-TTTT
7944881 CATTTTT
1 CATTTTT
7944888 TTGTTTGACT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 8 0.25
15 23 0.72
16 1 0.03
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.73
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:7944862 original size:22 final size:22
Alignment explanation
Indices: 7944837--7944887 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
7944827 TTAGCCTCTC
7944837 CATTTTT-ACTTTTTCAATTTTT
1 CATTTTTCACTTTTTCAA-TTTT
* **
7944859 CATTTTTCATTTTTTTTATTTT
1 CATTTTTCACTTTTTCAATTTT
7944881 CATTTTT
1 CATTTTT
7944888 TTGTTTGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.73
Consensus pattern (22 bp):
CATTTTTCACTTTTTCAATTTT
Found at i:7944872 original size:7 final size:7
Alignment explanation
Indices: 7944837--7944887 Score: 50
Period size: 7 Copynumber: 7.0 Consensus size: 7
7944827 TTAGCCTCTC
7944837 CATTTTT
1 CATTTTT
7944844 -ACTTTTT
1 CA-TTTTT
7944851 CAATTTTT
1 C-ATTTTT
7944859 CATTTTT
1 CATTTTT
7944866 CATTTTT
1 CATTTTT
**
7944873 TTTATTTT
1 CAT-TTTT
7944881 CATTTTT
1 CATTTTT
7944888 TTGTTTGACT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
6 1 0.03
7 23 0.64
8 11 0.31
9 1 0.03
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.73
Consensus pattern (7 bp):
CATTTTT
Found at i:7948360 original size:19 final size:19
Alignment explanation
Indices: 7948313--7948360 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
7948303 CACTTTGTGA
* *
7948313 AAATCTAATGCATATGATG
1 AAATGTAATGCAAATGATG
*
7948332 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATG-ATG
7948352 AAATG-AATG
1 AAATGTAATG
7948361 TAAAAAAGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (19 bp):
AAATGTAATGCAAATGATG
Found at i:7950298 original size:12 final size:12
Alignment explanation
Indices: 7950283--7950314 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7950273 TAATGAAAAT
7950283 ATAAATAAAGAA
1 ATAAATAAAGAA
7950295 ATAAATAAAGAA
1 ATAAATAAAGAA
*
7950307 ATGAATAA
1 ATAAATAA
7950315 GGCTATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (12 bp):
ATAAATAAAGAA
Found at i:7953521 original size:21 final size:21
Alignment explanation
Indices: 7953497--7953544 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
7953487 CGACTGTGGC
* *
7953497 GGAGGACTAGCAGCTGGGGGT
1 GGAGGACTAACAGCTGAGGGT
*
7953518 GGAGGACTAACAGGTGAGGGT
1 GGAGGACTAACAGCTGAGGGT
7953539 GGAGGA
1 GGAGGA
7953545 GACAAGGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.10, G:0.52, T:0.12
Consensus pattern (21 bp):
GGAGGACTAACAGCTGAGGGT
Found at i:7954533 original size:5 final size:5
Alignment explanation
Indices: 7954523--7954554 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
7954513 GAATTTAAAC
7954523 TATTT TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TATTT TA
7954555 AGTTAATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:7955019 original size:25 final size:26
Alignment explanation
Indices: 7954977--7955026 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
7954967 AATAAGATGT
* *
7954977 ATTTAATTTTTTTTTTTTAAATTTAA
1 ATTTAATTTATTTATTTTAAATTTAA
*
7955003 ATTT-ATTTATTTATTTTAATTTTA
1 ATTTAATTTATTTATTTTAAATTTA
7955027 TACATATTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (26 bp):
ATTTAATTTATTTATTTTAAATTTAA
Found at i:7956483 original size:4 final size:4
Alignment explanation
Indices: 7956474--7956500 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7956464 ATTACATATT
7956474 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
7956501 TGGTATTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:7956909 original size:21 final size:21
Alignment explanation
Indices: 7956871--7956910 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7956861 ATTTTAAAAT
**
7956871 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAATAAATTTTTTA
7956892 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
7956911 AGTATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTTAAAATAAATTTTTTA
Found at i:7956917 original size:22 final size:21
Alignment explanation
Indices: 7956870--7956928 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
7956860 AATTTTAAAA
* *
7956870 TATTTTTAAAAT-ACTTTTTT
1 TATTTTTAAAATAAATTTTTG
7956890 TAATTTTTAAAATAAATTTTTAG
1 T-ATTTTTAAAATAAATTTTT-G
7956913 TATTTATTAAAA-AAAT
1 TATTT-TTAAAATAAAT
7956929 GGGCCGGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 1 0.03
21 11 0.33
22 14 0.42
23 7 0.21
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTG
Found at i:7958617 original size:516 final size:516
Alignment explanation
Indices: 7957645--7958677 Score: 2021
Period size: 516 Copynumber: 2.0 Consensus size: 516
7957635 AACCTAATAT
7957645 TTTATTAAAATGACTAAGTTTTGAGGTGATCCAATCACACGTAATTAAAAAGGATTGGTGATGAC
1 TTTATTAAAATGACTAAGTTTTGAGGTGATCCAATCACACGTAATTAAAAAGGATTGGTGATGAC
7957710 TCTATTTTCATTTTTTTTTAAATAAAAAAGTTGATTTCTAAAAAGGTTTCGACCGATGTTATTTT
66 TCTATTTTCATTTTTTTTTAAATAAAAAAGTTGATTTCTAAAAAGGTTTCGACCGATGTTATTTT
7957775 CACAATGCTTACTTTTGTTCTAAATACATTCTACATGCATACATATATGATAGAATTACTAATTA
131 CACAATGCTTACTTTTGTTCTAAATACATTCTACATGCATACATATATGATAGAATTACTAATTA
7957840 ATATAATTTTCCTCATTAAATTTAAGCTCACCAATTAATATAATTTCTTTTTAGTAGACATTATC
196 ATATAATTTTCCTCATTAAATTTAAGCTCACCAATTAATATAATTTCTTTTTAGTAGACATTATC
*
7957905 CCACTTGAAAAGTTATAAAATAAATTTTTTTCTTATTTGAATAAATTTAAAAAAAATGTAGAGTG
261 CCACTTGAAAAGTTATAAAATAAATTTTTTTCTTATTTGAATAAATTTAAAAAAAATGTAGAATG
*
7957970 CAGTGTTATATAACATAAAATCTTAAATATTTTTATTAATAATTTTTAATATTTAGAGTTATTTA
326 CAGTGTTATATAACATAAAATCTTAAATATTTTTATTAATAATGTTTAATATTTAGAGTTATTTA
7958035 AATTATAAAAGTATTTACTTTTCTAAACTTTCTAGGTTTTCACATTTTAAATCTACATTTATTTT
391 AATTATAAAAGTATTTACTTTTCTAAACTTTCTAGGTTTTCACATTTTAAATCTACATTTATTTT
* *
7958100 ATTATTTAAGTATTTGTTTAAAAGTTAATATTTTCAAAATAGTTTAATCTTTTAGATGTCC
456 ATTATTTAAGTATTTGTTTAAAAGTTAATATTATCAAAATAGTTTAATCTTTTAGATCTCC
7958161 TTTATTAAAATGACTAAGTTTTGAGGTGATCCAATCACACGTAATTAAAAAGGATTGGTGATGAC
1 TTTATTAAAATGACTAAGTTTTGAGGTGATCCAATCACACGTAATTAAAAAGGATTGGTGATGAC
7958226 TCTATTTTCATTTTTTTTTAAATAAAAAAGTTGATTTCTAAAAAGGTTTCGACCGATGTTATTTT
66 TCTATTTTCATTTTTTTTTAAATAAAAAAGTTGATTTCTAAAAAGGTTTCGACCGATGTTATTTT
7958291 CACAATGCTTACTTTTGTTCTAAATACATTCTACATGCATACATATATGATAGAATTACTAATTA
131 CACAATGCTTACTTTTGTTCTAAATACATTCTACATGCATACATATATGATAGAATTACTAATTA
7958356 ATATAATTTTCCTCATTAAATTTAAGCTCACCAATTAATATAATTTCTTTTTAGTAGACATTATC
196 ATATAATTTTCCTCATTAAATTTAAGCTCACCAATTAATATAATTTCTTTTTAGTAGACATTATC
7958421 CCACTTGAAAAGTTATAAAATAAATTTTTTTCTTATTTGAATAAATTTAAAAAAAATGTAGAATG
261 CCACTTGAAAAGTTATAAAATAAATTTTTTTCTTATTTGAATAAATTTAAAAAAAATGTAGAATG
7958486 CAGTGTTATATAACATAAAATCTTAAATATTTTTATTAATAATGTTTAATATTTAGAGTTATTTA
326 CAGTGTTATATAACATAAAATCTTAAATATTTTTATTAATAATGTTTAATATTTAGAGTTATTTA
7958551 AATTATAAAAGTATTTACTTTTCTAAACTTTCTAGGTTTTCACATTTTAAATCTACATTTATTTT
391 AATTATAAAAGTATTTACTTTTCTAAACTTTCTAGGTTTTCACATTTTAAATCTACATTTATTTT
*
7958616 ATTATTTAAGTATTTGTTTAACAGTTAATATTATCAAAATAGTTTAATCTTTTAGATCTCC
456 ATTATTTAAGTATTTGTTTAAAAGTTAATATTATCAAAATAGTTTAATCTTTTAGATCTCC
7958677 T
1 T
7958678 CGCTCGTTTT
Statistics
Matches: 512, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
516 512 1.00
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.44
Consensus pattern (516 bp):
TTTATTAAAATGACTAAGTTTTGAGGTGATCCAATCACACGTAATTAAAAAGGATTGGTGATGAC
TCTATTTTCATTTTTTTTTAAATAAAAAAGTTGATTTCTAAAAAGGTTTCGACCGATGTTATTTT
CACAATGCTTACTTTTGTTCTAAATACATTCTACATGCATACATATATGATAGAATTACTAATTA
ATATAATTTTCCTCATTAAATTTAAGCTCACCAATTAATATAATTTCTTTTTAGTAGACATTATC
CCACTTGAAAAGTTATAAAATAAATTTTTTTCTTATTTGAATAAATTTAAAAAAAATGTAGAATG
CAGTGTTATATAACATAAAATCTTAAATATTTTTATTAATAATGTTTAATATTTAGAGTTATTTA
AATTATAAAAGTATTTACTTTTCTAAACTTTCTAGGTTTTCACATTTTAAATCTACATTTATTTT
ATTATTTAAGTATTTGTTTAAAAGTTAATATTATCAAAATAGTTTAATCTTTTAGATCTCC
Found at i:7958870 original size:14 final size:14
Alignment explanation
Indices: 7958851--7958890 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7958841 TTGTTTGCCA
7958851 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
7958865 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
7958879 GGAAAATGTTTT
1 GTAAAATGTTTT
7958891 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:7958897 original size:34 final size:35
Alignment explanation
Indices: 7958859--7958925 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7958849 CAGTAAAATG
* *
7958859 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACAGGAAAATATTTTAC
*
7958893 TTTTCTGTAAAATGATTTACAGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACAGGAAAATATTTT
7958926 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACAGGAAAATATTTTAC
Found at i:7958899 original size:20 final size:20
Alignment explanation
Indices: 7958874--7958912 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7958864 CGTAAAATGA
*
7958874 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
7958894 TTTCTGTAAAATGATTTAC
1 TTTCTGGAAAATGATTTAC
7958913 AGGAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7969521 original size:15 final size:15
Alignment explanation
Indices: 7969503--7969533 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7969493 TGGTTTAAAT
7969503 TTATATATTATCATC
1 TTATATATTATCATC
*
7969518 TTATATATTATTATC
1 TTATATATTATCATC
7969533 T
1 T
7969534 ATGTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATATATTATCATC
Found at i:7970354 original size:115 final size:115
Alignment explanation
Indices: 7970185--7970394 Score: 330
Period size: 115 Copynumber: 1.8 Consensus size: 115
7970175 AAGGAAAATT
* * * * * *
7970185 TTTCAAAATGAGGTAATGTTTTGCTTTTGGAAAATCGAGAAAATGTGCTCTAACGTGCTGGGTTT
1 TTTCAAAACGAGGCAATGTTTTGCGTTTGGAAAATCAAGAAAACGTGCCCTAACGTGCTGGGTTT
7970250 CGATTTCTCGTTCGACCAAATAGCCAAATAGCCAAATATCCTTTCAATAA
66 CGATTTCTCGTTCGACCAAATAGCCAAATAGCCAAATATCCTTTCAATAA
* *
7970300 TTTCAAAACGAGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACGTGCCCTAACGTGCTGTGTTT
1 TTTCAAAACGAGGCAATGTTTTGCGTTTGGAAAATCAAGAAAACGTGCCCTAACGTGCTGGGTTT
* *
7970365 TGATTTCTCGTTCGACTAAATAGCCAAATA
66 CGATTTCTCGTTCGACCAAATAGCCAAATA
7970395 TCCTCTTAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 85 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (115 bp):
TTTCAAAACGAGGCAATGTTTTGCGTTTGGAAAATCAAGAAAACGTGCCCTAACGTGCTGGGTTT
CGATTTCTCGTTCGACCAAATAGCCAAATAGCCAAATATCCTTTCAATAA
Found at i:7980651 original size:19 final size:18
Alignment explanation
Indices: 7980624--7980661 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7980614 AAATTCACAT
*
7980624 ATTTTAATAATTTTAAAAA
1 ATTTAAATAA-TTTAAAAA
7980643 ATTTAAATAATTTAAAAA
1 ATTTAAATAATTTAAAAA
7980661 A
1 A
7980662 CTTCTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTTAAATAATTTAAAAA
Found at i:7980794 original size:21 final size:21
Alignment explanation
Indices: 7980770--7980818 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
7980760 CACTGTTTCT
*
7980770 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
7980791 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
7980812 AATCTCA
1 AATCTCA
7980819 TCGCCACCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.35, G:0.08, T:0.24
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:7985724 original size:16 final size:15
Alignment explanation
Indices: 7985703--7985733 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
7985693 TATAAAAATA
7985703 TTAATTAACTTAATTT
1 TTAATTAA-TTAATTT
7985719 TTAATTAATTAATTT
1 TTAATTAATTAATTT
7985734 AGTAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TTAATTAATTAATTT
Found at i:7987391 original size:15 final size:15
Alignment explanation
Indices: 7987366--7987400 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7987356 AACTCTATTT
*
7987366 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
7987380 TAATTAATATTAAGA
1 TAATTAATATTAAGA
7987395 TAATTA
1 TAATTA
7987401 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:7991239 original size:4 final size:4
Alignment explanation
Indices: 7991226--7991293 Score: 61
Period size: 4 Copynumber: 16.5 Consensus size: 4
7991216 CAACTCAATT
*
7991226 TTTA -TTA TTTA TTTA TTTA TTTA TTTTC TTTA CTTTA TTTA -TTA CTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA TTTA TTTA -TTTA
7991275 TTTTA TTT- TATTA TTTA TT
1 -TTTA TTTA T-TTA TTTA TT
7991294 ACTTATTTGG
Statistics
Matches: 54, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
3 7 0.13
4 32 0.59
5 15 0.28
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:7991265 original size:22 final size:21
Alignment explanation
Indices: 7991230--7991293 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
7991220 TCAATTTTTA
7991230 TTATTTATTTATTTATTTATT
1 TTATTTATTTATTTATTTATT
* *
7991251 TTCTTTACTTTATTTA-TTACT
1 TTATTTA-TTTATTTATTTATT
7991272 TTATTTTATTT-TATTATTTATT
1 TTA-TTTATTTAT-TTATTTATT
7991294 ACTTATTTGG
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
20 1 0.03
21 18 0.51
22 16 0.46
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (21 bp):
TTATTTATTTATTTATTTATT
Found at i:7992933 original size:15 final size:15
Alignment explanation
Indices: 7992908--7992942 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7992898 AACTCTATTT
*
7992908 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
7992922 TAATTAATATTAAGA
1 TAATTAATATTAAGA
7992937 TAATTA
1 TAATTA
7992943 TTAAGATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:8000619 original size:17 final size:17
Alignment explanation
Indices: 8000597--8000629 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8000587 GTAATTACTC
*
8000597 TTTTTAAATATTTATAT
1 TTTTTAAATATCTATAT
8000614 TTTTTAAATATCTATA
1 TTTTTAAATATCTATA
8000630 GTGTCAAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTTAAATATCTATAT
Found at i:8004158 original size:3 final size:3
Alignment explanation
Indices: 8004098--8004142 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
8004088 TTGTTACTTA
8004098 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8004143 CATTTGCAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8014321 original size:18 final size:19
Alignment explanation
Indices: 8014300--8014348 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
8014290 AAATAAAACA
*
8014300 AAAATTAAATAA-AATAGT
1 AAAATTAAATAATAATAGG
*
8014318 AAAAAT-AATAATAATAGG
1 AAAATTAAATAATAATAGG
*
8014336 AAATTTAAA-AATA
1 AAAATTAAATAATA
8014349 TTTTTTTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 5 0.20
18 18 0.72
19 2 0.08
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (19 bp):
AAAATTAAATAATAATAGG
Found at i:8018932 original size:46 final size:46
Alignment explanation
Indices: 8018865--8019000 Score: 254
Period size: 46 Copynumber: 3.0 Consensus size: 46
8018855 GGCAAAATGT
8018865 GAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGC
1 GAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGC
8018911 GAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGC
1 GAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGC
* *
8018957 AAAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGTT
1 GAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTT
8019001 ATAGCAATGT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.37, C:0.10, G:0.26, T:0.26
Consensus pattern (46 bp):
GAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTGC
Found at i:8019101 original size:85 final size:86
Alignment explanation
Indices: 8018958--8019127 Score: 306
Period size: 85 Copynumber: 2.0 Consensus size: 86
8018948 CTGAGTTGCA
*
8018958 AAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGTTATAGCAATGTGAAACAT-CAAG
1 AAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAGTTATAGCAATGTGAAACATCCAAG
8019022 CAAACCGTGGCACCGGGAAAG
66 CAAACCGTGGCACCGGGAAAG
**
8019043 AAAAGTAGGTATGGTATTTCCGTGAAGAAAACCATACTGAGTTATAGCAATGTGAAACATCCAAG
1 AAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAGTTATAGCAATGTGAAACATCCAAG
8019108 CAAACCGTGGCACCGGGAAA
66 CAAACCGTGGCACCGGGAAA
8019128 ACGATGTACT
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
85 57 0.70
86 24 0.30
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.20
Consensus pattern (86 bp):
AAAAGTAGGTATGGTATTTCAATGAAGAAAACCATACTGAGTTATAGCAATGTGAAACATCCAAG
CAAACCGTGGCACCGGGAAAG
Found at i:8021573 original size:13 final size:13
Alignment explanation
Indices: 8021555--8021580 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8021545 AAATTTTGGG
8021555 GAAAAAGATGATA
1 GAAAAAGATGATA
8021568 GAAAAAGATGATA
1 GAAAAAGATGATA
8021581 TGTTCATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (13 bp):
GAAAAAGATGATA
Found at i:8025053 original size:11 final size:11
Alignment explanation
Indices: 8025037--8025074 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
8025027 CGATCTTCTC
8025037 CGATTTTTGCT
1 CGATTTTTGCT
8025048 CGATTTTTGCT
1 CGATTTTTGCT
8025059 CG-TTTTTCGCT
1 CGATTTTT-GCT
8025070 C-ATTT
1 CGATTT
8025075 CCCTCCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.08, C:0.21, G:0.16, T:0.55
Consensus pattern (11 bp):
CGATTTTTGCT
Found at i:8030295 original size:262 final size:262
Alignment explanation
Indices: 8029830--8030354 Score: 1023
Period size: 262 Copynumber: 2.0 Consensus size: 262
8029820 GTATTTATAA
*
8029830 AGATTTCGAGTTCAATTTTTGTGACAATTGGTAGAGTGAGGGATTAATCAATAGTTGAGGTAAAA
1 AGATTTCAAGTTCAATTTTTGTGACAATTGGTAGAGTGAGGGATTAATCAATAGTTGAGGTAAAA
8029895 ACACGTTTATAATGAATTTGAATATTGTTAAGCATGAATGGTTGTTAATAAAATGAGGAGAGAAT
66 ACACGTTTATAATGAATTTGAATATTGTTAAGCATGAATGGTTGTTAATAAAATGAGGAGAGAAT
8029960 GAGAAATTTTCAAAATTATGATAGTCTTGGTATACATTGTGTGAGATCGATGAACAGAAAGACTA
131 GAGAAATTTTCAAAATTATGATAGTCTTGGTATACATTGTGTGAGATCGATGAACAGAAAGACTA
8030025 TTGTATGAGATATTAGAGCTTAAAAGTCCTATCCCAGGGAAATGGTGATGGCCAATTTTTACACT
196 TTGTATGAGATATTAGAGCTTAAAAGTCCTATCCCAGGGAAATGGTGATGGCCAATTTTTACACT
8030090 TT
261 TT
*
8030092 AGATTTCAAGTTCAATTTTTGTGACAATTGGTAGAGTTAGGGATTAATCAATAGTTGAGGTAAAA
1 AGATTTCAAGTTCAATTTTTGTGACAATTGGTAGAGTGAGGGATTAATCAATAGTTGAGGTAAAA
*
8030157 ACATGTTTATAATGAATTTGAATATTGTTAAGCATGAATGGTTGTTAATAAAATGAGGAGAGAAT
66 ACACGTTTATAATGAATTTGAATATTGTTAAGCATGAATGGTTGTTAATAAAATGAGGAGAGAAT
8030222 GAGAAATTTTCAAAATTATGATAGTCTTGGTATACATTGTGTGAGATCGATGAACAGAAAGACTA
131 GAGAAATTTTCAAAATTATGATAGTCTTGGTATACATTGTGTGAGATCGATGAACAGAAAGACTA
8030287 TTGTATGAGATATTAGAGCTTAAAAGTCCTATCCCAGGGAAATGGTGATGGCCAATTTTTACACT
196 TTGTATGAGATATTAGAGCTTAAAAGTCCTATCCCAGGGAAATGGTGATGGCCAATTTTTACACT
8030352 TT
261 TT
8030354 A
1 A
8030355 TGTGAAATTG
Statistics
Matches: 260, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
262 260 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.34
Consensus pattern (262 bp):
AGATTTCAAGTTCAATTTTTGTGACAATTGGTAGAGTGAGGGATTAATCAATAGTTGAGGTAAAA
ACACGTTTATAATGAATTTGAATATTGTTAAGCATGAATGGTTGTTAATAAAATGAGGAGAGAAT
GAGAAATTTTCAAAATTATGATAGTCTTGGTATACATTGTGTGAGATCGATGAACAGAAAGACTA
TTGTATGAGATATTAGAGCTTAAAAGTCCTATCCCAGGGAAATGGTGATGGCCAATTTTTACACT
TT
Found at i:8034793 original size:4 final size:4
Alignment explanation
Indices: 8034780--8034857 Score: 72
Period size: 4 Copynumber: 18.5 Consensus size: 4
8034770 CAACCCAATT
8034780 TTTA -TTA TTTA TTTA TTTA TTTTA TTTTA TTTA CTTTA TTTA CTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA -TTTA TTTA -TTTA TTTA -TTTA
8034827 TTTA -TTA CTTTA CTTTA TTT- TATTA TTTA TT
1 TTTA TTTA -TTTA -TTTA TTTA T-TTA TTTA TT
8034858 ACTTATTTGG
Statistics
Matches: 66, Mismatches: 0, Indels: 16
0.80 0.00 0.20
Matches are distributed among these distances:
3 7 0.11
4 33 0.50
5 26 0.39
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:8034803 original size:9 final size:9
Alignment explanation
Indices: 8034779--8034857 Score: 62
Period size: 9 Copynumber: 9.2 Consensus size: 9
8034769 GCAACCCAAT
8034779 TTTTA-TTA
1 TTTTATTTA
8034787 -TTTATTTA
1 TTTTATTTA
8034795 -TTTATTTTA
1 TTTTA-TTTA
8034804 TTTTATTTA
1 TTTTATTTA
*
8034813 CTTTATTTA
1 TTTTATTTA
*
8034822 CTTTATTTA
1 TTTTATTTA
8034831 --TTACTTTA
1 TTTTA-TTTA
*
8034839 CTTTATTT-
1 TTTTATTTA
*
8034847 TATTATTTA
1 TTTTATTTA
8034856 TT
1 TT
8034858 ACTTATTTGG
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
7 7 0.12
8 17 0.28
9 29 0.48
10 7 0.12
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTTATTTA
Found at i:8036516 original size:15 final size:15
Alignment explanation
Indices: 8036491--8036525 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8036481 AACTCTATTT
*
8036491 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
8036505 TAATTAATATTAAGA
1 TAATTAATATTAAGA
8036520 TAATTA
1 TAATTA
8036526 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:8038113 original size:15 final size:15
Alignment explanation
Indices: 8038093--8038121 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8038083 AGGAGGTGGA
8038093 GGAGATAAGGATGGC
1 GGAGATAAGGATGGC
8038108 GGAGATAAGGATGG
1 GGAGATAAGGATGG
8038122 GGTTGCTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.03, G:0.48, T:0.14
Consensus pattern (15 bp):
GGAGATAAGGATGGC
Found at i:8047991 original size:19 final size:19
Alignment explanation
Indices: 8047969--8048006 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8047959 TAAAGCAAGA
8047969 AAACTATTAGTCATTATCC
1 AAACTATTAGTCATTATCC
8047988 AAACTATTAGTCATTATCC
1 AAACTATTAGTCATTATCC
8048007 CCAACATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.05, T:0.37
Consensus pattern (19 bp):
AAACTATTAGTCATTATCC
Found at i:8055444 original size:20 final size:18
Alignment explanation
Indices: 8055417--8055463 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
8055407 ACATATATGT
*
8055417 ATATATATAAGGTATATAA
1 ATATATATAA-GTATAAAA
8055436 ATAATATATAAGTATAAAA
1 AT-ATATATAAGTATAAAA
8055455 ATATATATA
1 ATATATATA
8055464 CAAATAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.27
19 11 0.42
20 8 0.31
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (18 bp):
ATATATATAAGTATAAAA
Found at i:8055518 original size:26 final size:26
Alignment explanation
Indices: 8055482--8055535 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
8055472 TTAAAATAAT
* * **
8055482 ATGTACGTATGTATATATATGACAAA
1 ATGTAAGTATGTACATATACAACAAA
8055508 ATGTAAGTATGTACATATACAACAAA
1 ATGTAAGTATGTACATATACAACAAA
8055534 AT
1 AT
8055536 TTGAAACTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.31
Consensus pattern (26 bp):
ATGTAAGTATGTACATATACAACAAA
Found at i:8055612 original size:12 final size:12
Alignment explanation
Indices: 8055595--8055624 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8055585 TAATAATGAT
8055595 GTAATAGTAATA
1 GTAATAGTAATA
8055607 GTAATAGTAATA
1 GTAATAGTAATA
*
8055619 ATAATA
1 GTAATA
8055625 TTAAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33
Consensus pattern (12 bp):
GTAATAGTAATA
Found at i:8057251 original size:12 final size:12
Alignment explanation
Indices: 8057234--8057287 Score: 90
Period size: 12 Copynumber: 4.3 Consensus size: 12
8057224 TTTTATTAAA
8057234 TAAGTGATATTT
1 TAAGTGATATTT
8057246 TAAGTGATATTT
1 TAAGTGATATTT
8057258 TAAGTGATATATGT
1 TAAGTGATAT-T-T
8057272 TAAGTGATATTT
1 TAAGTGATATTT
8057284 TAAG
1 TAAG
8057288 GTTAGCTGCC
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
12 27 0.68
13 2 0.05
14 11 0.28
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (12 bp):
TAAGTGATATTT
Found at i:8059038 original size:182 final size:183
Alignment explanation
Indices: 8058730--8059060 Score: 574
Period size: 182 Copynumber: 1.8 Consensus size: 183
8058720 TATTTTAGCC
*
8058730 CAGACATAATCTTCTTATATAAGGATACCTATCTTATTGAATTGATTCCAAGAAATTTGATTAAA
1 CAGACATAATCTTCTTATATAAGGATACCTATCTTATTGAATTGACTCCAAGAAATTTGATTAAA
* *
8058795 TTTTTGTGGATATTTTTTCCAAAATTCCAACATTCTCCATGCCTATAAAAAGCCATGATTTCTGA
66 TTTTTGTAGATATTTTCTCCAAAATTCCAACATTCTCCATGCCTATAAAAAGCCATGATTTCTGA
8058860 ACGGTTTTTCACAAGAAAAATATTTTAGCTCAACACGAATTTATTTTCCTCGG
131 ACGGTTTTTCACAAGAAAAATATTTTAGCTCAACACGAATTTATTTTCCTCGG
* *
8058913 CAGACATAATCTTCTTATATAAGGATACTTATCTTATTGATTTGACTCCAAGAAATTTGATT-AA
1 CAGACATAATCTTCTTATATAAGGATACCTATCTTATTGAATTGACTCCAAGAAATTTGATTAAA
* * *
8058977 TTTTTGTAGATATTTTCTCCAAAATTCCAACATTCTTCATGCCTATAAAAGGCTATGATTTCTGA
66 TTTTTGTAGATATTTTCTCCAAAATTCCAACATTCTCCATGCCTATAAAAAGCCATGATTTCTGA
*
8059042 AGGGTTTTTCACAAGAAAA
131 ACGGTTTTTCACAAGAAAA
8059061 TACTCTATGA
Statistics
Matches: 139, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
182 80 0.58
183 59 0.42
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.38
Consensus pattern (183 bp):
CAGACATAATCTTCTTATATAAGGATACCTATCTTATTGAATTGACTCCAAGAAATTTGATTAAA
TTTTTGTAGATATTTTCTCCAAAATTCCAACATTCTCCATGCCTATAAAAAGCCATGATTTCTGA
ACGGTTTTTCACAAGAAAAATATTTTAGCTCAACACGAATTTATTTTCCTCGG
Found at i:8065046 original size:24 final size:24
Alignment explanation
Indices: 8065019--8065075 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
8065009 AAACCTAATT
8065019 CTAATCAAA-GTCAAATATATTATG
1 CTAAT-AAATGTCAAATATATTATG
* *
8065043 CTAATAAATGTTAAATATATTATA
1 CTAATAAATGTCAAATATATTATG
*
8065067 CTCATAAAT
1 CTAATAAAT
8065076 ACTAAATCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 3 0.10
24 26 0.90
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37
Consensus pattern (24 bp):
CTAATAAATGTCAAATATATTATG
Found at i:8065081 original size:24 final size:24
Alignment explanation
Indices: 8065031--8065082 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8065021 AATCAAAGTC
* **
8065031 AAATATATTATGCTAATAAATGTT
1 AAATATATTATACTAATAAATACT
*
8065055 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
8065079 AAAT
1 AAAT
8065083 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:8089648 original size:79 final size:79
Alignment explanation
Indices: 8089517--8089674 Score: 271
Period size: 79 Copynumber: 2.0 Consensus size: 79
8089507 CAACTCGGAG
* * * *
8089517 ATTAAGACAGTATATGTTATACCACACGACCTGGCTAATTTCAAAGTTAGACCCGTTAAAGTATA
1 ATTAAGACAGTATATGTTATACCACACAACCTGGCTAATCTCAAAGTTAGACCCATTAAAATATA
8089582 TGATGGAGTCAACT
66 TGATGGAGTCAACT
*
8089596 ATTAAGGCAGTATATGTTATACCACACAACCTGGCTAATCTCAAAGTTAGACCCATTAAAATATA
1 ATTAAGACAGTATATGTTATACCACACAACCTGGCTAATCTCAAAGTTAGACCCATTAAAATATA
8089661 TGATGGAGTCAACT
66 TGATGGAGTCAACT
8089675 GCTTTGAATG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 74 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (79 bp):
ATTAAGACAGTATATGTTATACCACACAACCTGGCTAATCTCAAAGTTAGACCCATTAAAATATA
TGATGGAGTCAACT
Found at i:8092658 original size:88 final size:89
Alignment explanation
Indices: 8092539--8092726 Score: 270
Period size: 88 Copynumber: 2.1 Consensus size: 89
8092529 AGTAGATCAG
* * *
8092539 AGATCAGAAGAAAGCGGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAGCAAATC
1 AGATCA-AAGAAAGCAGATCTTGCCTCCCCATACTGGTGGTGAAGCAGATCAAAGAAAACAAATC
*
8092604 TTGTCTTCATGTACTGGCGTGAAGT
65 GTGTCTTCATGTACTGGCGTGAAGT
* * * * * *
8092629 AGATCAAAGAAA-CAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGGTCGAAGAAAACAGATCG
1 AGATCAAAGAAAGCAGATCTTGCCTCCCCATACTGGTGGTGAAGCAGATCAAAGAAAACAAATCG
8092693 TGTCTTCATGTACTGGCGTGAAGT
66 TGTCTTCATGTACTGGCGTGAAGT
8092717 AGATCAAAGA
1 AGATCAAAGA
8092727 TAGNNNNNNN
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 76 0.86
89 6 0.07
90 6 0.07
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (89 bp):
AGATCAAAGAAAGCAGATCTTGCCTCCCCATACTGGTGGTGAAGCAGATCAAAGAAAACAAATCG
TGTCTTCATGTACTGGCGTGAAGT
Found at i:8092674 original size:44 final size:45
Alignment explanation
Indices: 8092539--8092726 Score: 184
Period size: 44 Copynumber: 4.2 Consensus size: 45
8092529 AGTAGATCAG
* * *
8092539 AGATCAGAAGAAAGCGGATCTTGCCTTCCCATACTGGTGGTGAAGC
1 AGATCA-AAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
* *** *
8092585 AGATCAAAGAAAGCAAATCTTGTCTTCATGTACTGG-CGTGAAGT
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
* *
8092629 AGATCAAAGAAA-CAGATCTTGTCTCCCCATACTGGTGGTGGAGT
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
* * * * *** *
8092673 AGGTCGAAGAAAACAGATCGTGTCTTCATGTACTGG-CGTGAAGT
1 AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
8092717 AGATCAAAGA
1 AGATCAAAGA
8092727 TAGNNNNNNN
Statistics
Matches: 114, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
43 18 0.16
44 48 0.42
45 42 0.37
46 6 0.05
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (45 bp):
AGATCAAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGT
Found at i:8093044 original size:109 final size:109
Alignment explanation
Indices: 8092853--8093070 Score: 427
Period size: 109 Copynumber: 2.0 Consensus size: 109
8092843 AGTGGAGCAG
8092853 ATCGAAGATGGCGGATTTTACCTCCCTGAAGTTTCAGTGGAGTATATTGAAGTCAATAATTCTAC
1 ATCGAAGATGGCGGATTTTACCTCCCTGAAGTTTCAGTGGAGTATATTGAAGTCAATAATTCTAC
8092918 CTCCCCGGTCGGCAGTGGAATCGATTGAAAAAGCAGATCTTGTC
66 CTCCCCGGTCGGCAGTGGAATCGATTGAAAAAGCAGATCTTGTC
8092962 ATCGAAGATGGCGGATTTTACCTCCCTGAAGTTTCAGTGGAGTATATTGAAGTCAATAATTCTAC
1 ATCGAAGATGGCGGATTTTACCTCCCTGAAGTTTCAGTGGAGTATATTGAAGTCAATAATTCTAC
*
8093027 CTCCCCGGTCGGCAGTGGAATCGATTGAAAAAGCAGATTTTGTC
66 CTCCCCGGTCGGCAGTGGAATCGATTGAAAAAGCAGATCTTGTC
8093071 TTCATGTATT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 108 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (109 bp):
ATCGAAGATGGCGGATTTTACCTCCCTGAAGTTTCAGTGGAGTATATTGAAGTCAATAATTCTAC
CTCCCCGGTCGGCAGTGGAATCGATTGAAAAAGCAGATCTTGTC
Found at i:8099959 original size:38 final size:42
Alignment explanation
Indices: 8099896--8099985 Score: 143
Period size: 38 Copynumber: 2.2 Consensus size: 42
8099886 AAAAATTATA
*
8099896 TTTAATAAAATAAAAATATTTATTATATTTATA-T-GTG-TT
1 TTTAATATAATAAAAATATTTATTATATTTATAGTAGTGTTT
8099935 TTTAATATAAT-AAAATATTTATTATATTTATAGTAGTGTTT
1 TTTAATATAATAAAAATATTTATTATATTTATAGTAGTGTTT
8099976 TTTAATATAA
1 TTTAATATAA
8099986 ATATTTTTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
38 21 0.45
39 11 0.23
40 3 0.06
41 12 0.26
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (42 bp):
TTTAATATAATAAAAATATTTATTATATTTATAGTAGTGTTT
Found at i:8104858 original size:17 final size:17
Alignment explanation
Indices: 8104836--8104870 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8104826 TGAACACAAA
*
8104836 TGGTCCATTAGGTAGCT
1 TGGTCCACTAGGTAGCT
*
8104853 TGGTCCACTCGGTAGCT
1 TGGTCCACTAGGTAGCT
8104870 T
1 T
8104871 TAAGCCTAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.23, G:0.29, T:0.34
Consensus pattern (17 bp):
TGGTCCACTAGGTAGCT
Found at i:8104962 original size:16 final size:16
Alignment explanation
Indices: 8104943--8104973 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8104933 TCTAACATCA
8104943 TAGAGTACCATTACCT
1 TAGAGTACCATTACCT
8104959 TAGAGTACCATTACC
1 TAGAGTACCATTACC
8104974 CCTTCTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
TAGAGTACCATTACCT
Found at i:8108111 original size:33 final size:32
Alignment explanation
Indices: 8108039--8108112 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 32
8108029 TAGATACATG
** **
8108039 TGTAAGACCATAGTTGGGCTATGGCATTCTGA
1 TGTAAGACCATAACTGGGCTATGGCATTCAAA
*
8108071 TGATAAGACCATAACTGGGTTATGGCATTACAAA
1 TG-TAAGACCATAACTGGGCTATGGCATT-CAAA
8108105 TGTAAGAC
1 TGTAAGAC
8108113 TATGGAAATG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
32 2 0.06
33 29 0.83
34 4 0.11
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (32 bp):
TGTAAGACCATAACTGGGCTATGGCATTCAAA
Found at i:8121008 original size:18 final size:17
Alignment explanation
Indices: 8120974--8121008 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8120964 TATGCTAGTA
*
8120974 TTTTTTTAATAAATATT
1 TTTTTTTAAAAAATATT
8120991 TTTTTTTAAAAAAGTATT
1 TTTTTTTAAAAAA-TATT
8121009 GCAATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
TTTTTTTAAAAAATATT
Found at i:8124940 original size:13 final size:14
Alignment explanation
Indices: 8124922--8124955 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
8124912 GCTCGGCTCG
8124922 TTTATATTATT-TT
1 TTTATATTATTATT
8124935 TTTATATTATTATT
1 TTTATATTATTATT
8124949 TTTATAT
1 TTTATAT
8124956 AAAAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATATTATTATT
Found at i:8124947 original size:16 final size:16
Alignment explanation
Indices: 8124926--8124956 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8124916 GGCTCGTTTA
*
8124926 TATTATTTTTTTATAT
1 TATTATTTTTATATAT
8124942 TATTATTTTTATATA
1 TATTATTTTTATATA
8124957 AAAATAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTATTTTTATATAT
Found at i:8126458 original size:16 final size:17
Alignment explanation
Indices: 8126437--8126468 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8126427 TGTCATTAAA
8126437 ATATTAA-AATAATTTT
1 ATATTAATAATAATTTT
8126453 ATATTAATAATAATTT
1 ATATTAATAATAATTT
8126469 AAATTTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTAATAATAATTTT
Found at i:8135275 original size:21 final size:21
Alignment explanation
Indices: 8135249--8135288 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8135239 TCAAAACGAC
*
8135249 ATGGTTTTGCCTTTTAATTTA
1 ATGGTTTTGACTTTTAATTTA
8135270 ATGGTTTTGACTTTTAATT
1 ATGGTTTTGACTTTTAATT
8135289 GTAGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.07, G:0.15, T:0.57
Consensus pattern (21 bp):
ATGGTTTTGACTTTTAATTTA
Found at i:8139542 original size:129 final size:129
Alignment explanation
Indices: 8139309--8139620 Score: 452
Period size: 129 Copynumber: 2.4 Consensus size: 129
8139299 ACTGACATTA
* *
8139309 ACAAAATAACTAGACAGTTACACATG-TCATGCCATGTGTACCTCATTCTGACATTCAAGGACCA
1 ACAAAATAACAAGACAGTTACACATGAT-GTGCCATGTGTACCTCATTCTGACATTCAAGGACCA
* * * *
8139373 ATTCTTAATAGTAGAAATTAATGAAACTTTTAATAGAATGACCAGTTTGCTTTTTGATAAAATGT
65 ATTCTTAACAGTAGAAATGAATGAAACTTTTAATAAAATGACCAGTTTGCTTTTTGATAAAATGC
8139438 ACAAAATAACAAGACAGTTACACATGATGTGCCATGTGTACCTCATTCTGACATTCAAGGACCAA
1 ACAAAATAACAAGACAGTTACACATGATGTGCCATGTGTACCTCATTCTGACATTCAAGGACCAA
* *
8139503 TTCTTAACAGTAGAAATGAATGAGATTTTTAATAAAATGACCAGTTTGCTTTTTGATAAAATGC
66 TTCTTAACAGTAGAAATGAATGAAACTTTTAATAAAATGACCAGTTTGCTTTTTGATAAAATGC
* * * *
8139567 ATAGAATAACCAA-ACAGTTACACATGGCATGT--CAAGTGTATCTCATTCTGACAT
1 ACAAAATAA-CAAGACAGTTACACAT-G-ATGTGCCATGTGTACCTCATTCTGACAT
8139621 AAATTTTTAA
Statistics
Matches: 167, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
129 158 0.95
130 5 0.03
131 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31
Consensus pattern (129 bp):
ACAAAATAACAAGACAGTTACACATGATGTGCCATGTGTACCTCATTCTGACATTCAAGGACCAA
TTCTTAACAGTAGAAATGAATGAAACTTTTAATAAAATGACCAGTTTGCTTTTTGATAAAATGC
Found at i:8145751 original size:19 final size:18
Alignment explanation
Indices: 8145722--8145758 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
8145712 CATGCACAAG
8145722 AAAGAAAGAAAACAAAAA
1 AAAGAAAGAAAACAAAAA
*
8145740 AAAGAGAAGAAAAGAAAAA
1 AAAGA-AAGAAAACAAAAA
8145759 CATCCAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.81, C:0.03, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAAACAAAAA
Done.