Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 25 of 141
Found at i:8159897 original size:14 final size:15
Alignment explanation
Indices: 8159870--8159898 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8159860 TGATTTGCAG
8159870 GGGAAGAGAGAAAGA
1 GGGAAGAGAGAAAGA
8159885 GGGAAGA-AGAAAGA
1 GGGAAGAGAGAAAGA
8159899 AAATGGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (15 bp):
GGGAAGAGAGAAAGA
Found at i:8165179 original size:30 final size:32
Alignment explanation
Indices: 8165111--8165180 Score: 90
Period size: 30 Copynumber: 2.2 Consensus size: 32
8165101 TTTTAATTTT
*
8165111 AAAAAATAAAAGGGCTAAATTCTTAAAAATAA
1 AAAAAATAAAAGGACTAAATTCTTAAAAATAA
* * *
8165143 AAAAAATTAAA-GACTAAATTC-TAAATATAC
1 AAAAAATAAAAGGACTAAATTCTTAAAAATAA
8165173 AAAAAATA
1 AAAAAATA
8165181 CAAAAACTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 14 0.42
31 9 0.27
32 10 0.30
ACGTcount: A:0.64, C:0.07, G:0.06, T:0.23
Consensus pattern (32 bp):
AAAAAATAAAAGGACTAAATTCTTAAAAATAA
Found at i:8169044 original size:3 final size:3
Alignment explanation
Indices: 8169036--8169066 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
8169026 ACTATTAAGA
8169036 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
8169067 CAAACAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:8173565 original size:32 final size:32
Alignment explanation
Indices: 8173528--8173596 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
8173518 GTACATAGAT
8173528 TATAATGTAACAGAGATTAATGAGTGTGTATA
1 TATAATGTAACAGAGATTAATGAGTGTGTATA
8173560 TATAATGTAACAGAGATTAATGAGTGTGTATA
1 TATAATGTAACAGAGATTAATGAGTGTGTATA
8173592 TATAA
1 TATAA
8173597 CAAAGATACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.35
Consensus pattern (32 bp):
TATAATGTAACAGAGATTAATGAGTGTGTATA
Found at i:8176920 original size:13 final size:13
Alignment explanation
Indices: 8176902--8176930 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8176892 TCATTTTCTC
8176902 TCTTTTT-TTTTT
1 TCTTTTTCTTTTT
8176914 TCTTTTTCTTTTT
1 TCTTTTTCTTTTT
8176927 TCTT
1 TCTT
8176931 GCTCACCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TCTTTTTCTTTTT
Found at i:8176968 original size:6 final size:6
Alignment explanation
Indices: 8176957--8176988 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
8176947 TAATTGTCAT
*
8176957 CTTCAC CTTCAC CTTCAC CTTCAC CTTTAC CT
1 CTTCAC CTTCAC CTTCAC CTTCAC CTTCAC CT
8176989 CCACTGTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.47, G:0.00, T:0.38
Consensus pattern (6 bp):
CTTCAC
Found at i:8179365 original size:378 final size:380
Alignment explanation
Indices: 8178614--8179368 Score: 1372
Period size: 378 Copynumber: 2.0 Consensus size: 380
8178604 TTAATTAAAA
*
8178614 AAATTAATTAAAGCCATTCGAAGGAAAAATATCTTTAGAATTGTCATAAATTAAATTCTTTGATG
1 AAATTAATTAAAGCCATTCGAAGGAAAAATATCTTTAGAATTGTC---AATTAAATTCTTTGACG
* *
8178679 ATCAATTTTAATCGTTAAAGTGTAGCAAATTTTTGTTGTCACTTGTCATGCCATACTTATGCCAT
63 ATCAATTTTAACCGTTAAAGTGTAACAAATTTTTGTTGTCACTTGTCATGCCATACTTATGCCAT
8178744 GTGGTGAAAGTTATATATTCTCTTTTAAAATATTTAAAAAATAAAAATATATATATAAAGAGAAA
128 GTGGTGAAAGTTATATATTCTCTTTTAAAATATTTAAAAAATAAAAATATATATATAAAGAGAAA
8178809 AAAAGGGTATATTGCCTTAATACTCACTAAACTTTTAGCGTATTTTTATTTTGATCACTAAACTA
193 AAAAGGGTATATTGCCTTAATACTCACTAAACTTTTAGCGTATTTTTATTTTGATCACTAAACTA
8178874 TAAAATAAAATAATTTAATTATTAAATTATTCAAATTTATTTTTTAAATCATCGTGCCGTTAAAT
258 TAAAATAAAATAATTTAATTATTAAATTATTCAAATTTATTTTTTAAATCATCGTGCCGTTAAAT
8178939 TACAAAAAAAGTGATGACGTGGATTTTTAAATTATTTCATTTAAAGCAGTGGATTTTT
323 TACAAAAAAAGTGATGACGTGGATTTTTAAATTATTTCATTTAAAGCAGTGGATTTTT
*
8178997 AAATTAATTAAAGCCCATTCGAAGGAAAAATATCTTTAGAATTGTC-A-TAAGTTCTTTGACGAT
1 AAATTAATTAAAG-CCATTCGAAGGAAAAATATCTTTAGAATTGTCAATTAAATTCTTTGACGAT
8179060 CAATTTTAACCGTTAAAGTGTAACAAATTTTTGTTGTCACTTGTCATGCCATACTTATGCCATGT
65 CAATTTTAACCGTTAAAGTGTAACAAATTTTTGTTGTCACTTGTCATGCCATACTTATGCCATGT
*
8179125 GGTGAAAGTTATATATTCTCTTTTAAAATATTTTAAAAATAAAAATATATATATAAAGAG-AAAA
130 GGTGAAAGTTATATATTCTCTTTTAAAATATTTAAAAAATAAAAATATATATATAAAGAGAAAAA
8179189 AAGGGTATATTGCCTTAATACTCACTAAACTTTTAGCGTATTTTTATTTTGATCACTAAACTATA
195 AAGGGTATATTGCCTTAATACTCACTAAACTTTTAGCGTATTTTTATTTTGATCACTAAACTATA
**
8179254 AAATAATTTAATTTAATTATTAAATTATTCAAATTTATTTTTTAAATCATCGTGCCGTTAAATTA
260 AAATAAAATAATTTAATTATTAAATTATTCAAATTTATTTTTTAAATCATCGTGCCGTTAAATTA
* *
8179319 CAAAAAGAGTGATGATGTGGATTTTTAAATTATTTCATTTAAAGCAGTGG
325 CAAAAAAAGTGATGACGTGGATTTTTAAATTATTTCATTTAAAGCAGTGG
8179369 GTCCTATCAT
Statistics
Matches: 362, Mismatches: 9, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
378 180 0.50
379 136 0.38
380 1 0.00
383 13 0.04
384 32 0.09
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (380 bp):
AAATTAATTAAAGCCATTCGAAGGAAAAATATCTTTAGAATTGTCAATTAAATTCTTTGACGATC
AATTTTAACCGTTAAAGTGTAACAAATTTTTGTTGTCACTTGTCATGCCATACTTATGCCATGTG
GTGAAAGTTATATATTCTCTTTTAAAATATTTAAAAAATAAAAATATATATATAAAGAGAAAAAA
AGGGTATATTGCCTTAATACTCACTAAACTTTTAGCGTATTTTTATTTTGATCACTAAACTATAA
AATAAAATAATTTAATTATTAAATTATTCAAATTTATTTTTTAAATCATCGTGCCGTTAAATTAC
AAAAAAAGTGATGACGTGGATTTTTAAATTATTTCATTTAAAGCAGTGGATTTTT
Found at i:8179411 original size:17 final size:17
Alignment explanation
Indices: 8179389--8179421 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8179379 ATTATCACAA
8179389 TTTTTT-CTTCTTCTTTT
1 TTTTTTCCTTC-TCTTTT
8179406 TTTTTTCCTTCTCTTT
1 TTTTTTCCTTCTCTTT
8179422 CATTCTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTCCTTCTCTTTT
Found at i:8179445 original size:8 final size:8
Alignment explanation
Indices: 8179434--8179467 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
8179424 TTCTTTAAAT
8179434 TTTTTTTC
1 TTTTTTTC
8179442 TTTTTTTC
1 TTTTTTTC
*
8179450 TTTTTCTC
1 TTTTTTTC
8179458 -TTTTTTC
1 TTTTTTTC
8179465 TTT
1 TTT
8179468 CTTCTCCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTTC
Found at i:8179459 original size:16 final size:15
Alignment explanation
Indices: 8179436--8179473 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
8179426 CTTTAAATTT
8179436 TTTTTCT-TTTTTTC
1 TTTTTCTCTTTTTTC
8179450 TTTTTCTCTTTTTTC
1 TTTTTCTCTTTTTTC
8179465 TTTCTTCTC
1 TTT-TTCTC
8179474 CTTTAAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 7 0.32
15 10 0.45
16 5 0.23
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTCTCTTTTTTC
Found at i:8182419 original size:31 final size:30
Alignment explanation
Indices: 8182384--8182457 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 30
8182374 ATAATAAAAT
8182384 AGTCATTAAATTATTCGA-AAGTTTTTATTTA
1 AGTCATTAAATT-TTC-ATAAGTTTTTATTTA
8182415 AGTCATTAAAATTTTCATAAGTTTTTATTTA
1 AGTCATT-AAATTTTCATAAGTTTTTATTTA
* *
8182446 AGTTACTAAATT
1 AGTCATTAAATT
8182458 GTTAAGTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
30 6 0.15
31 28 0.72
32 5 0.13
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.49
Consensus pattern (30 bp):
AGTCATTAAATTTTCATAAGTTTTTATTTA
Found at i:8186849 original size:29 final size:28
Alignment explanation
Indices: 8186808--8186876 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 28
8186798 CGAATATAAT
*
8186808 AAATATATATTTTTTATTTTTTATTTTTA
1 AAATAAAT-TTTTTTATTTTTTATTTTTA
8186837 AAATAAATTTTTTTATTTTTTATTTTTA
1 AAATAAATTTTTTTATTTTTTATTTTTA
*
8186865 AAATAAAATTTT
1 AAATAAATTTTT
8186877 GGTGTTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 31 0.82
29 7 0.18
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (28 bp):
AAATAAATTTTTTTATTTTTTATTTTTA
Found at i:8193649 original size:26 final size:27
Alignment explanation
Indices: 8193604--8193669 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
8193594 TTCCATGCTG
8193604 TTTTTTTGAATTTTTATGAACTATTTATA
1 TTTTTTTGAA--TTTATGAACTATTTATA
* *
8193633 TTTTTTTGAATTT-TGAACTTTTTTTA
1 TTTTTTTGAATTTATGAACTATTTATA
*
8193659 ATTTTTTGAAT
1 TTTTTTTGAAT
8193670 ATTTTATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.62
27 3 0.09
29 10 0.29
ACGTcount: A:0.24, C:0.03, G:0.08, T:0.65
Consensus pattern (27 bp):
TTTTTTTGAATTTATGAACTATTTATA
Found at i:8193665 original size:19 final size:19
Alignment explanation
Indices: 8193643--8193683 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8193633 TTTTTTTGAA
*
8193643 TTTTGAACT-TTTTTTAATT
1 TTTTGAA-TATTTTATAATT
8193662 TTTTGAATATTTTATAATT
1 TTTTGAATATTTTATAATT
8193681 TTT
1 TTT
8193684 AAATTATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (19 bp):
TTTTGAATATTTTATAATT
Found at i:8198327 original size:91 final size:92
Alignment explanation
Indices: 8198216--8198416 Score: 239
Period size: 92 Copynumber: 2.2 Consensus size: 92
8198206 TCAAAAAAAA
* * * ***
8198216 AAGTATTAGGTACCAAATTAGGAAAACGAGTCAAGTTCAGGTACC-AAATTGGACCC-CCCAAAA
1 AAGT-TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGAACCGAAA-TAGACCCAAAAAAAA
8198279 GTTTAAGTACC-GACTTA-AGAAAAAGTGTC
64 GTTTAAGTACCGGA-TTAGA-AAAAAGTGTC
* *
8198308 AAGTTTAGGTACCAAATTAGGAAAAAGTGTCAAGTTTAGGAACCGAAATAGACCCAAAAAAAAGT
1 AAGTTTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGAACCGAAATAGACCCAAAAAAAAGT
8198373 TTAAGTACCGGATTAGAAAAAAGTGTC
66 TTAAGTACCGGATTAGAAAAAAGTGTC
* * *
8198400 GAGTTCAAGTACCAAAT
1 AAGTTTAGGTACCAAAT
8198417 ATTATATTAA
Statistics
Matches: 94, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
91 42 0.45
92 49 0.52
93 3 0.03
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (92 bp):
AAGTTTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGAACCGAAATAGACCCAAAAAAAAGT
TTAAGTACCGGATTAGAAAAAAGTGTC
Found at i:8198346 original size:31 final size:31
Alignment explanation
Indices: 8198216--8198356 Score: 106
Period size: 31 Copynumber: 4.5 Consensus size: 31
8198206 TCAAAAAAAA
* *
8198216 AAGTATTAGGTACCAAATTAGGAAAACGAGTC
1 AAGT-TTAGGTACCAAATTAGGAAAAAGTGTC
* ********
8198248 AAGTTCAGGTACCAAATT-GG-ACCCCCCAA
1 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
* * * *
8198277 AAGTTTAAGTACCGACTTAAGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
8198308 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
*
8198339 AAGTTTAGGAACCGAAAT
1 AAGTTTAGGTACC-AAAT
8198357 AGACCCAAAA
Statistics
Matches: 80, Mismatches: 26, Indels: 6
0.71 0.23 0.05
Matches are distributed among these distances:
29 16 0.20
30 3 0.04
31 53 0.66
32 8 0.10
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
Found at i:8199439 original size:91 final size:92
Alignment explanation
Indices: 8199328--8199528 Score: 239
Period size: 92 Copynumber: 2.2 Consensus size: 92
8199318 TCAAAAAAAA
* * * ***
8199328 AAGTATTAGGTACCAAATTAGGAAAACGAGTCAAGTTCAGGTACC-AAATTGGACCC-CCCAAAA
1 AAGT-TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGAACCGAAA-TAGACCCAAAAAAAA
8199391 GTTTAAGTACC-GACTTA-AGAAAAAGTGTC
64 GTTTAAGTACCGGA-TTAGA-AAAAAGTGTC
* *
8199420 AAGTTTAGGTACCAAATTAGGAAAAAGTGTCAAGTTTAGGAACCGAAATAGACCCAAAAAAAAGT
1 AAGTTTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGAACCGAAATAGACCCAAAAAAAAGT
8199485 TTAAGTACCGGATTAGAAAAAAGTGTC
66 TTAAGTACCGGATTAGAAAAAAGTGTC
* * *
8199512 GAGTTCAAGTACCAAAT
1 AAGTTTAGGTACCAAAT
8199529 ATTATATTAA
Statistics
Matches: 94, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
91 42 0.45
92 49 0.52
93 3 0.03
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (92 bp):
AAGTTTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGAACCGAAATAGACCCAAAAAAAAGT
TTAAGTACCGGATTAGAAAAAAGTGTC
Found at i:8199458 original size:31 final size:31
Alignment explanation
Indices: 8199328--8199468 Score: 106
Period size: 31 Copynumber: 4.5 Consensus size: 31
8199318 TCAAAAAAAA
* *
8199328 AAGTATTAGGTACCAAATTAGGAAAACGAGTC
1 AAGT-TTAGGTACCAAATTAGGAAAAAGTGTC
* ********
8199360 AAGTTCAGGTACCAAATT-GG-ACCCCCCAA
1 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
* * * *
8199389 AAGTTTAAGTACCGACTTAAGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
8199420 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
*
8199451 AAGTTTAGGAACCGAAAT
1 AAGTTTAGGTACC-AAAT
8199469 AGACCCAAAA
Statistics
Matches: 80, Mismatches: 26, Indels: 6
0.71 0.23 0.05
Matches are distributed among these distances:
29 16 0.20
30 3 0.04
31 53 0.66
32 8 0.10
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
Found at i:8213466 original size:75 final size:75
Alignment explanation
Indices: 8213343--8213494 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
8213333 TGAAATATTT
8213343 TACATAGTTTCTCATATTCCTTTCTTATGCTCTAATATGAACTTTCAAAAGGGTGTACTTCATAC
1 TACATAGTTTCTCATATTCCTTTCTTATGCTCTAATATGAACTTTCAAAAGGGTGTACTTCATAC
8213408 AACTGGAGGA
66 AACTGGAGGA
8213418 TACATAGTTTCTCATATTCCTTTCTTATGCTCTAATATGAACTTTCAAAAGGGTGTACTTCATAC
1 TACATAGTTTCTCATATTCCTTTCTTATGCTCTAATATGAACTTTCAAAAGGGTGTACTTCATAC
8213483 AACTGGAGGA
66 AACTGGAGGA
8213493 TA
1 TA
8213495 TATGGTGTAC
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (75 bp):
TACATAGTTTCTCATATTCCTTTCTTATGCTCTAATATGAACTTTCAAAAGGGTGTACTTCATAC
AACTGGAGGA
Found at i:8217986 original size:24 final size:24
Alignment explanation
Indices: 8217958--8218004 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8217948 AAGCCCAATA
*
8217958 ATGCCCGGGCCCAAGCAAACAAAT
1 ATGCCCGGGCCCAAACAAACAAAT
* *
8217982 ATGCCTGGGCCCAAACCAACAAA
1 ATGCCCGGGCCCAAACAAACAAA
8218005 CAAGACCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.34, G:0.19, T:0.09
Consensus pattern (24 bp):
ATGCCCGGGCCCAAACAAACAAAT
Found at i:8219057 original size:3 final size:3
Alignment explanation
Indices: 8219049--8219078 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8219039 TATTTATTGA
8219049 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8219079 NNNNNNNNNN
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8220922 original size:19 final size:20
Alignment explanation
Indices: 8220882--8220925 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
8220872 ATCTCTTTAG
* *
8220882 GCATT-CATTTCATGCATTT
1 GCATTACATTCCATGCATAT
8220901 GCATTACATTCCAT-CATAT
1 GCATTACATTCCATGCATAT
8220920 GCATTA
1 GCATTA
8220926 AACACCTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (20 bp):
GCATTACATTCCATGCATAT
Found at i:8233302 original size:24 final size:24
Alignment explanation
Indices: 8233270--8233316 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8233260 AAGCCCAATA
*
8233270 ATGCCCGGGCCCAAGCAAACAAAT
1 ATGCCCGGGCCCAAACAAACAAAT
* *
8233294 ATGCTCGGGCCCAAACCAACAAA
1 ATGCCCGGGCCCAAACAAACAAA
8233317 CAAGACCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.34, G:0.19, T:0.09
Consensus pattern (24 bp):
ATGCCCGGGCCCAAACAAACAAAT
Found at i:8233740 original size:7 final size:6
Alignment explanation
Indices: 8233709--8233737 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8233699 TTTTCTATAT
8233709 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
8233738 TATATAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:8233808 original size:3 final size:3
Alignment explanation
Indices: 8233800--8233840 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
8233790 TATTTATTGA
*
8233800 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8233841 CTGCACATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:8246723 original size:10 final size:10
Alignment explanation
Indices: 8246710--8246734 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8246700 AGTTAACCTC
8246710 AAATAATCAG
1 AAATAATCAG
8246720 AAATAATCAG
1 AAATAATCAG
8246730 AAATA
1 AAATA
8246735 GCTTATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (10 bp):
AAATAATCAG
Found at i:8249309 original size:17 final size:18
Alignment explanation
Indices: 8249289--8249328 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
8249279 ATAATTTTTA
*
8249289 AAAATATA-TAATACATC
1 AAAATATACTAAAACATC
8249306 AAAA-ATACTAAAACATC
1 AAAATATACTAAAACATC
8249323 AAAATA
1 AAAATA
8249329 AATATTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 16 0.80
18 1 0.05
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAATATACTAAAACATC
Found at i:8270656 original size:31 final size:31
Alignment explanation
Indices: 8270610--8270671 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
8270600 AATAATTGGA
*
8270610 TTTAACTTAATTGAGAA-AAAGATAATAAATT
1 TTTAACTTAAATGAGAACAAA-ATAATAAATT
*
8270641 TTTATCTTAAATGAGAACAAAATAATAAATT
1 TTTAACTTAAATGAGAACAAAATAATAAATT
8270672 CTATCTGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (31 bp):
TTTAACTTAAATGAGAACAAAATAATAAATT
Found at i:8272608 original size:40 final size:41
Alignment explanation
Indices: 8272512--8272625 Score: 142
Period size: 40 Copynumber: 2.8 Consensus size: 41
8272502 CAATGTTTCA
* * *
8272512 CACACTAATTGCCAATCATATAGCCGAAGCTATTATAATTCCG
1 CACACTAAGTGCC-AT-ATATAGCCGAAGCTATTACAAATCCG
*
8272555 CACACTAAGTGCCATATATAGCCGAAGCTATTCCAAAT-CG
1 CACACTAAGTGCCATATATAGCCGAAGCTATTACAAATCCG
*
8272595 CACACTAAGTGCCAT-TAATAACCGAAGCTAT
1 CACACTAAGTGCCATAT-ATAGCCGAAGCTAT
8272626 CTCGATTTCA
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
39 1 0.02
40 30 0.46
41 20 0.31
42 2 0.03
43 12 0.18
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (41 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATTACAAATCCG
Found at i:8273576 original size:53 final size:53
Alignment explanation
Indices: 8273519--8273624 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
8273509 CCATTAATGT
*
8273519 CCATTAACACTACCAATGGTCTATTATCATTATAAGGACTTTTAATTTAATTA
1 CCATTAACACTACCAATGGTCTATTATCATTATAAGGACATTTAATTTAATTA
*
8273572 CCATTAACACTACCAATGGTCTATTATCATTGTAAGGACATTTAATTTAATTA
1 CCATTAACACTACCAATGGTCTATTATCATTATAAGGACATTTAATTTAATTA
8273625 ATCATAGCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (53 bp):
CCATTAACACTACCAATGGTCTATTATCATTATAAGGACATTTAATTTAATTA
Found at i:8273602 original size:26 final size:26
Alignment explanation
Indices: 8273520--8273602 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
8273510 CATTAATGTC
8273520 CATTAACACTACCAATGGTCTATTAT
1 CATTAACACTACCAATGGTCTATTAT
* *** *
8273546 CATTATAAGGACTTTTAAT--T-TAATTAC
1 CA-T-TAA-CACTACCAATGGTCT-ATTAT
8273573 CATTAACACTACCAATGGTCTATTAT
1 CATTAACACTACCAATGGTCTATTAT
8273599 CATT
1 CATT
8273603 GTAAGGACAT
Statistics
Matches: 40, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
24 6 0.15
25 3 0.08
26 13 0.32
27 9 0.22
28 3 0.08
29 6 0.15
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (26 bp):
CATTAACACTACCAATGGTCTATTAT
Found at i:8286732 original size:10 final size:10
Alignment explanation
Indices: 8286685--8286741 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
8286675 AATGATTTTT
*
8286685 AATTTTTAAA
1 AATTTTTTAA
*
8286695 AATAATTTTTAT
1 AAT--TTTTTAA
*
8286707 ATTTTGTTTAA
1 AATTT-TTTAA
*
8286718 TATTTTTTAA
1 AATTTTTTAA
8286728 AATTTTTTAA
1 AATTTTTTAA
8286738 AATT
1 AATT
8286742 AATAAAATGG
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
10 23 0.62
11 7 0.19
12 7 0.19
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:8288839 original size:15 final size:15
Alignment explanation
Indices: 8288806--8288853 Score: 55
Period size: 14 Copynumber: 3.2 Consensus size: 15
8288796 GCTTTGTTTG
8288806 TTTTGCTAGTAAAAT-A
1 TTTT-CTAG-AAAATGA
8288822 TTTTCTAGAAAATGA
1 TTTTCTAGAAAATGA
*
8288837 -TTTCTGGAAAATGA
1 TTTTCTAGAAAATGA
8288851 TTT
1 TTT
8288854 ACTTTTCTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 18 0.62
15 7 0.24
16 4 0.14
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (15 bp):
TTTTCTAGAAAATGA
Found at i:8288869 original size:19 final size:20
Alignment explanation
Indices: 8288837--8288882 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
8288827 TAGAAAATGA
8288837 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
8288857 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
8288876 TTTCTGG
1 TTTCTGG
8288883 TGTTTGAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:8296694 original size:18 final size:19
Alignment explanation
Indices: 8296662--8296700 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
8296652 AGAAGATGGA
8296662 GAATGGAAGAAGGAA-AAG
1 GAATGGAAGAAGGAAGAAG
8296680 GAAT-GAAGAACGGAAGAAG
1 GAATGGAAGAA-GGAAGAAG
8296699 GA
1 GA
8296701 GAAGGAGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 8 0.42
19 5 0.26
ACGTcount: A:0.54, C:0.03, G:0.38, T:0.05
Consensus pattern (19 bp):
GAATGGAAGAAGGAAGAAG
Found at i:8299451 original size:34 final size:34
Alignment explanation
Indices: 8299412--8299479 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
8299402 GTTGAAGAAA
*
8299412 GTTCACCTTGTGTCCTTTATTGAGCCAACTATGT
1 GTTCACCTTGCGTCCTTTATTGAGCCAACTATGT
8299446 GTTCACCTTGCGTCCTTTATTGAGCCAACTATGT
1 GTTCACCTTGCGTCCTTTATTGAGCCAACTATGT
8299480 ATAAAACCGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.40
Consensus pattern (34 bp):
GTTCACCTTGCGTCCTTTATTGAGCCAACTATGT
Found at i:8301307 original size:40 final size:40
Alignment explanation
Indices: 8301250--8301330 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
8301240 AAAATGGATG
* *
8301250 AACATCTTTTCATCTTTTGTTAACTAATTTATTGTTTTTT
1 AACATATTTTCACCTTTTGTTAACTAATTTATTGTTTTTT
8301290 AACATATTTTCACCTTTTGTTAACTAATTTATTGTTTTTT
1 AACATATTTTCACCTTTTGTTAACTAATTTATTGTTTTTT
8301330 A
1 A
8301331 CTTTAAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.25, C:0.12, G:0.05, T:0.58
Consensus pattern (40 bp):
AACATATTTTCACCTTTTGTTAACTAATTTATTGTTTTTT
Found at i:8301319 original size:21 final size:20
Alignment explanation
Indices: 8301256--8301319 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
8301246 GATGAACATC
8301256 TTTTCATCTTTTGTTAACTAA
1 TTTTCA-CTTTTGTTAACTAA
* *
8301277 -TTT-ATTGTTTTTTAAC-ATA
1 TTTTCACT-TTTGTTAACTA-A
8301296 TTTTCACCTTTTGTTAACTAA
1 TTTTCA-CTTTTGTTAACTAA
8301317 TTT
1 TTT
8301320 ATTGTTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
18 2 0.06
19 10 0.30
20 6 0.18
21 13 0.39
22 2 0.06
ACGTcount: A:0.23, C:0.12, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTCACTTTTGTTAACTAA
Found at i:8301328 original size:21 final size:20
Alignment explanation
Indices: 8301264--8301327 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
8301254 TCTTTTCATC
8301264 TTTTGTTAACTAATTTATTG
1 TTTTGTTAACTAATTTATTG
* **
8301284 TTTT-TTAACATATTTTCA-CC
1 TTTTGTTAAC-TAATTT-ATTG
8301304 TTTTGTTAACTAATTTATTG
1 TTTTGTTAACTAATTTATTG
8301324 TTTT
1 TTTT
8301328 TTACTTTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
19 6 0.18
20 22 0.65
21 6 0.18
ACGTcount: A:0.23, C:0.09, G:0.06, T:0.61
Consensus pattern (20 bp):
TTTTGTTAACTAATTTATTG
Found at i:8311336 original size:22 final size:22
Alignment explanation
Indices: 8311311--8311353 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8311301 TATCCAAGTA
8311311 ATAACAACAAAAT-AGTAGCAAC
1 ATAACAACAAAATGA-TAGCAAC
* *
8311333 ATAATAGCAAAATGATAGCAA
1 ATAACAACAAAATGATAGCAA
8311354 AACAGTAGCG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.58, C:0.14, G:0.12, T:0.16
Consensus pattern (22 bp):
ATAACAACAAAATGATAGCAAC
Found at i:8320813 original size:15 final size:16
Alignment explanation
Indices: 8320790--8320827 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8320780 AATTTTTTAA
8320790 AGATAATTT-TTAAAAT
1 AGAT-ATTTGTTAAAAT
*
8320806 TGATATTTGTTAAAAT
1 AGATATTTGTTAAAAT
8320822 AGATAT
1 AGATAT
8320828 ATGAACATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (16 bp):
AGATATTTGTTAAAAT
Found at i:8334864 original size:24 final size:27
Alignment explanation
Indices: 8334796--8334864 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 27
8334786 ACATATATTC
* **
8334796 TCAATTCAATCACAATTTCTCACTCTT
1 TCAATTCAATAATTATTTCTCACTCTT
* *
8334823 TCAATTGAATCATT-TTTC-CAC-CTT
1 TCAATTCAATAATTATTTCTCACTCTT
8334847 TCAA-TCAATAATTATTTC
1 TCAATTCAATAATTATTTC
8334865 ACAAATTCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 7 0.19
24 11 0.31
25 3 0.08
26 4 0.11
27 11 0.31
ACGTcount: A:0.30, C:0.25, G:0.01, T:0.43
Consensus pattern (27 bp):
TCAATTCAATAATTATTTCTCACTCTT
Found at i:8335515 original size:14 final size:14
Alignment explanation
Indices: 8335496--8335541 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
8335486 TATTTAAAAT
8335496 ATAATAATAATTTA
1 ATAATAATAATTTA
*
8335510 ATAATACTAATTTA
1 ATAATAATAATTTA
8335524 ATAATAATAATTTA
1 ATAATAATAATTTA
8335538 ATAA
1 ATAA
8335542 CATTTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:8339742 original size:237 final size:238
Alignment explanation
Indices: 8339318--8339792 Score: 943
Period size: 237 Copynumber: 2.0 Consensus size: 238
8339308 TATATTTAGC
8339318 ATTTACCCAAAAATATCCTAATAATACAAGATATTTTATTTACAAGATTAAAATTACAAAATTAA
1 ATTTACCCAAAAATATCCTAATAATACAAGATATTTTATTTACAAGATTAAAATTACAAAATTAA
8339383 TAATTTTCAAAAATCAAAATTTAATTTTATCAAACAATATTATTTTATTCGATCCTTTATATTAT
66 TAATTTTCAAAAATCAAAATTTAATTTTATCAAACAATATTATTTTATTCGATCCTTTATATTAT
8339448 TATTCAAAACATCATAGTAATGTAGACTTAATATTATTATCTAATCATATATCTTATACAAAATC
131 TATTCAAAACATCATAGTAATGTAGACTTAATATTATTATCTAATCATATATCTTATACAAAATC
8339513 CGGAGGTGCATTAAATAATTGTAAACTGACAGTTTTTTATTTA
196 CGGAGGTGCATTAAATAATTGTAAACTGACAGTTTTTTATTTA
8339556 ATTTACCC-AAAATATCCTAATAATACAAGATATTTTATTTACAAGATTAAAATTACAAAATTAA
1 ATTTACCCAAAAATATCCTAATAATACAAGATATTTTATTTACAAGATTAAAATTACAAAATTAA
8339620 TAATTTTCAAAAATCAAAATTTAATTTTATCAAACAATATTATTTTATTCGATCCTTTATATTAT
66 TAATTTTCAAAAATCAAAATTTAATTTTATCAAACAATATTATTTTATTCGATCCTTTATATTAT
8339685 TATTCAAAACATCATAGTAATGTAGACTTAATATTATTATCTAATCATATATCTTATACAAAATC
131 TATTCAAAACATCATAGTAATGTAGACTTAATATTATTATCTAATCATATATCTTATACAAAATC
8339750 CGGAGGTGCATTAAATAATTGTAAACTGACAGTTTTTTATTTA
196 CGGAGGTGCATTAAATAATTGTAAACTGACAGTTTTTTATTTA
8339793 TTTCAACTTT
Statistics
Matches: 237, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
237 229 0.97
238 8 0.03
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (238 bp):
ATTTACCCAAAAATATCCTAATAATACAAGATATTTTATTTACAAGATTAAAATTACAAAATTAA
TAATTTTCAAAAATCAAAATTTAATTTTATCAAACAATATTATTTTATTCGATCCTTTATATTAT
TATTCAAAACATCATAGTAATGTAGACTTAATATTATTATCTAATCATATATCTTATACAAAATC
CGGAGGTGCATTAAATAATTGTAAACTGACAGTTTTTTATTTA
Found at i:8340753 original size:2 final size:2
Alignment explanation
Indices: 8340746--8340775 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8340736 AACCATTATT
8340746 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8340776 CTTTATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8347383 original size:21 final size:21
Alignment explanation
Indices: 8347359--8347400 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8347349 TGTAGGTTAC
8347359 ATAAATTTA-TATTTAAATAAA
1 ATAAATTTATTA-TTAAATAAA
*
8347380 ATAATTTTATTATTAAATAAA
1 ATAAATTTATTATTAAATAAA
8347401 TTTTGAGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATAAATTTATTATTAAATAAA
Found at i:8347671 original size:11 final size:11
Alignment explanation
Indices: 8347655--8347688 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
8347645 TTTTGTCTCA
8347655 CGCTACAGTAT
1 CGCTACAGTAT
8347666 CGCTACAGTAT
1 CGCTACAGTAT
8347677 CGCTACAGTAT
1 CGCTACAGTAT
8347688 C
1 C
8347689 TAATCTCACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (11 bp):
CGCTACAGTAT
Found at i:8350422 original size:2 final size:2
Alignment explanation
Indices: 8350415--8350439 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8350405 CGTCAGGGTA
8350415 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8350440 GATGCACACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8352828 original size:12 final size:12
Alignment explanation
Indices: 8352811--8352835 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8352801 ACTTTGGTAG
8352811 TGTTTTGGTGAT
1 TGTTTTGGTGAT
8352823 TGTTTTGGTGAT
1 TGTTTTGGTGAT
8352835 T
1 T
8352836 CTCTTTCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (12 bp):
TGTTTTGGTGAT
Found at i:8359565 original size:3 final size:3
Alignment explanation
Indices: 8359557--8359582 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8359547 GAGTTCTACT
8359557 CTC CTC CTC CTC CTC CTC CTC CTC CT
1 CTC CTC CTC CTC CTC CTC CTC CTC CT
8359583 GCGCCCAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
CTC
Found at i:8368836 original size:192 final size:192
Alignment explanation
Indices: 8368509--8368895 Score: 774
Period size: 192 Copynumber: 2.0 Consensus size: 192
8368499 TTATCTTTAA
8368509 TAGTTGTCTATGAAACCCAAATTTCTTTTGACTGTTTGATCTTAAATCTTCCATACTAAGCTAAA
1 TAGTTGTCTATGAAACCCAAATTTCTTTTGACTGTTTGATCTTAAATCTTCCATACTAAGCTAAA
8368574 AGTATTAAAAAAATCATTCTAATTAATTTAATTAATTAATTTTATCTACTATGCCAAACAAAACT
66 AGTATTAAAAAAATCATTCTAATTAATTTAATTAATTAATTTTATCTACTATGCCAAACAAAACT
8368639 CATAAAATTTTTCATCACTTATTTACCCAAACGAAGAAGAAGCAAATATTTTCCTTTACTTT
131 CATAAAATTTTTCATCACTTATTTACCCAAACGAAGAAGAAGCAAATATTTTCCTTTACTTT
8368701 TAGTTGTCTATGAAACCCAAATTTCTTTTGACTGTTTGATCTTAAATCTTCCATACTAAGCTAAA
1 TAGTTGTCTATGAAACCCAAATTTCTTTTGACTGTTTGATCTTAAATCTTCCATACTAAGCTAAA
8368766 AGTATTAAAAAAATCATTCTAATTAATTTAATTAATTAATTTTATCTACTATGCCAAACAAAACT
66 AGTATTAAAAAAATCATTCTAATTAATTTAATTAATTAATTTTATCTACTATGCCAAACAAAACT
8368831 CATAAAATTTTTCATCACTTATTTACCCAAACGAAGAAGAAGCAAATATTTTCCTTTACTTT
131 CATAAAATTTTTCATCACTTATTTACCCAAACGAAGAAGAAGCAAATATTTTCCTTTACTTT
8368893 TAG
1 TAG
8368896 CATGGATTCG
Statistics
Matches: 195, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
192 195 1.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.39
Consensus pattern (192 bp):
TAGTTGTCTATGAAACCCAAATTTCTTTTGACTGTTTGATCTTAAATCTTCCATACTAAGCTAAA
AGTATTAAAAAAATCATTCTAATTAATTTAATTAATTAATTTTATCTACTATGCCAAACAAAACT
CATAAAATTTTTCATCACTTATTTACCCAAACGAAGAAGAAGCAAATATTTTCCTTTACTTT
Found at i:8379177 original size:10 final size:10
Alignment explanation
Indices: 8379162--8379208 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
8379152 TTTAATGATG
8379162 TAATATTAAT
1 TAATATTAAT
8379172 TAATATTAAT
1 TAATATTAAT
**
8379182 TAATAAAAAT
1 TAATATTAAT
*
8379192 TACTTATTAA-
1 TA-ATATTAAT
8379202 TAATATT
1 TAATATT
8379209 TATTTAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
9 4 0.13
10 22 0.73
11 4 0.13
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATATTAAT
Found at i:8379740 original size:6 final size:6
Alignment explanation
Indices: 8379729--8379758 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
8379719 TCATGGTTTG
8379729 AATATT AATATT AATATT AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT
8379759 CAAACCATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATATT
Found at i:8388002 original size:9 final size:9
Alignment explanation
Indices: 8387973--8388009 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
8387963 TGAGTTTTCG
8387973 AATTCGAAT
1 AATTCGAAT
*
8387982 AACTCGAAT
1 AATTCGAAT
8387991 AATTCGAAT
1 AATTCGAAT
*
8388000 AATTCAAAT
1 AATTCGAAT
8388009 A
1 A
8388010 TTAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:8394739 original size:42 final size:42
Alignment explanation
Indices: 8394643--8394742 Score: 173
Period size: 42 Copynumber: 2.4 Consensus size: 42
8394633 CTATATGAAC
* *
8394643 GGCACTAAGTGTACGAAATTAAAATGATGATGTTGAATAATA
1 GGCACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAACA
*
8394685 GGCACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAACG
1 GGCACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAACA
8394727 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
8394743 TATCGATAGC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAACA
Found at i:8396889 original size:40 final size:40
Alignment explanation
Indices: 8396823--8397052 Score: 253
Period size: 40 Copynumber: 5.8 Consensus size: 40
8396813 GAATTTTTTT
* **
8396823 GCGGCGTTTTTCAAAAAGCTTCGCTAATGCTCGATCTATA
1 GCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATCTATA
* * * ** * *
8396863 GCGTCATTTTCCAAGAAGCGTTGCTAATGCTTGACCTATA
1 GCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATCTATA
* * * * *
8396903 ACGGCGTTTTTCAAAAAGCGTCGCTAATGGTCGACCTATA
1 GCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATCTATA
*
8396943 GCGGCGTTTTCCAAAAAGAGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATCTATA
* * * *
8396983 ACGGCGTTTTTCAAAGAGCACCGCTAATGCTCGATCTATA
1 GCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATCTATA
* **
8397023 GCGGCGTTTTTCAAAAATTGCCGCTAATGC
1 GCGGCGTTTTCCAAAAAGCGCCGCTAATGC
8397053 CACTAAAGCT
Statistics
Matches: 158, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 158 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (40 bp):
GCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATCTATA
Found at i:8396969 original size:80 final size:80
Alignment explanation
Indices: 8396824--8397052 Score: 305
Period size: 80 Copynumber: 2.9 Consensus size: 80
8396814 AATTTTTTTG
* * * * * **
8396824 CGGCGTTTTTCAAAAAGCTTCGCTAATGCTCGATCTATAGCGTCATTTTCCAAGAAGCGTTGCTA
1 CGGCGTTTTTCAAAAAGCATCGCTAATGCTCGATCTATAGCGGCGTTTTCCAAAAAGAGCCGCTA
*
8396889 ATGCTTGACCTATAA
66 ATGCTCGACCTATAA
* * *
8396904 CGGCGTTTTTCAAAAAGCGTCGCTAATGGTCGACCTATAGCGGCGTTTTCCAAAAAGAGCCGCTA
1 CGGCGTTTTTCAAAAAGCATCGCTAATGCTCGATCTATAGCGGCGTTTTCCAAAAAGAGCCGCTA
*
8396969 ATGCTCGATCTATAA
66 ATGCTCGACCTATAA
* * * **
8396984 CGGCGTTTTTCAAAGAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAATTGCCGCTA
1 CGGCGTTTTTCAAAAAGCATCGCTAATGCTCGATCTATAGCGGCGTTTTCCAAAAAGAGCCGCTA
8397049 ATGC
66 ATGC
8397053 CACTAAAGCT
Statistics
Matches: 130, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 130 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (80 bp):
CGGCGTTTTTCAAAAAGCATCGCTAATGCTCGATCTATAGCGGCGTTTTCCAAAAAGAGCCGCTA
ATGCTCGACCTATAA
Found at i:8396969 original size:120 final size:120
Alignment explanation
Indices: 8396823--8397039 Score: 292
Period size: 120 Copynumber: 1.8 Consensus size: 120
8396813 GAATTTTTTT
* *** * * ***
8396823 GCGGCGTTTTTCAAAAAGCTTCGCTAATGCTCGATCTATAGCGTCATTTTCC-AAGAAGCGTTGC
1 GCGGCGTTTTCCAAAAAGAGCCGCTAATGCTCGATCTATAACGGCATTTTCCAAAG-AGCACCGC
*
8396887 TAATGCTTGACCTATAACGGCGTTTTTCAAAAAGCGTCGCTAATGGTCGACCTATA
65 TAATGCTCGACCTATAACGGCGTTTTTCAAAAAGCGTCGCTAATGGTCGACCTATA
* *
8396943 GCGGCGTTTTCCAAAAAGAGCCGCTAATGCTCGATCTATAACGGCGTTTTTCAAAGAGCACCGCT
1 GCGGCGTTTTCCAAAAAGAGCCGCTAATGCTCGATCTATAACGGCATTTTCCAAAGAGCACCGCT
* *
8397008 AATGCTCGATCTATAGCGGCGTTTTTCAAAAA
66 AATGCTCGACCTATAACGGCGTTTTTCAAAAA
8397040 TTGCCGCTAA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
120 79 0.96
121 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (120 bp):
GCGGCGTTTTCCAAAAAGAGCCGCTAATGCTCGATCTATAACGGCATTTTCCAAAGAGCACCGCT
AATGCTCGACCTATAACGGCGTTTTTCAAAAAGCGTCGCTAATGGTCGACCTATA
Found at i:8404579 original size:28 final size:31
Alignment explanation
Indices: 8404548--8404616 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 31
8404538 ATTTTTCAAG
*
8404548 TTTTTAAAATT-TTAATTAAA-T-TTATTAA
1 TTTTTAAAATTATAAATTAAATTATTATTAA
* * *
8404576 TTTTTTATATTATAAATTAAATTATTGTTAA
1 TTTTTAAAATTATAAATTAAATTATTATTAA
*
8404607 TTATTAAAAT
1 TTTTTAAAAT
8404617 AAAATATTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 9 0.29
29 8 0.26
30 1 0.03
31 13 0.42
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (31 bp):
TTTTTAAAATTATAAATTAAATTATTATTAA
Found at i:8420865 original size:15 final size:15
Alignment explanation
Indices: 8420847--8420896 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
8420837 ACACATGTAT
8420847 TTTTGTAACATCCAA
1 TTTTGTAACATCCAA
* ** *
8420862 TTTTTTACACATGTAT
1 TTTTGTA-ACATCCAA
8420878 TTTTGTAACATCCAA
1 TTTTGTAACATCCAA
8420893 TTTT
1 TTTT
8420897 TTCTAGTACA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.28, C:0.16, G:0.06, T:0.50
Consensus pattern (15 bp):
TTTTGTAACATCCAA
Found at i:8420866 original size:16 final size:16
Alignment explanation
Indices: 8420845--8420897 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
8420835 ATACACATGT
8420845 ATTTTTGTAACATCCA
1 ATTTTTGTAACATCCA
**
8420861 ATTTTT-TACACAT-GT
1 ATTTTTGTA-ACATCCA
8420876 ATTTTTGTAACATCCA
1 ATTTTTGTAACATCCA
8420892 ATTTTT
1 ATTTTT
8420898 TCTAGTACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
15 12 0.40
16 18 0.60
ACGTcount: A:0.28, C:0.15, G:0.06, T:0.51
Consensus pattern (16 bp):
ATTTTTGTAACATCCA
Found at i:8420871 original size:31 final size:31
Alignment explanation
Indices: 8420836--8420898 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
8420826 TAACATGCAA
8420836 TACACATGTATTTTTGTAACATCCAATTTTT
1 TACACATGTATTTTTGTAACATCCAATTTTT
8420867 TACACATGTATTTTTGTAACATCCAATTTTT
1 TACACATGTATTTTTGTAACATCCAATTTTT
8420898 T
1 T
8420899 CTAGTACAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.49
Consensus pattern (31 bp):
TACACATGTATTTTTGTAACATCCAATTTTT
Found at i:8446035 original size:26 final size:26
Alignment explanation
Indices: 8446006--8446055 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
8445996 GATTTTCATT
*
8446006 AATATA-AAGAAACTACATATATATCC
1 AATATACAA-AAAATACATATATATCC
*
8446032 AATATACAAAAAATATATATATAT
1 AATATACAAAAAATACATATATAT
8446056 ATATAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (26 bp):
AATATACAAAAAATACATATATATCC
Found at i:8457736 original size:108 final size:109
Alignment explanation
Indices: 8457603--8457819 Score: 427
Period size: 108 Copynumber: 2.0 Consensus size: 109
8457593 CAAATTAAAT
8457603 TATCAAAATATATTTAATAAATTAAACATAAAATTAAATAAATTAATAAAATCATGAAATTTTTA
1 TATCAAAATATATTTAATAAATTAAACATAAAATTAAATAAATTAATAAAATCATGAAATTTTTA
8457668 AACATAATAATATTAATTTTTTACAATAAAAAATTCCCACGTGG
66 AACATAATAATATTAATTTTTTACAATAAAAAATTCCCACGTGG
8457712 TATCAAAATA-ATTTAATAAATTAAACATAAAATTAAATAAATTAATAAAATCATGAAATTTTTA
1 TATCAAAATATATTTAATAAATTAAACATAAAATTAAATAAATTAATAAAATCATGAAATTTTTA
8457776 AACATAATAATATTAATTTTTTACAATAAAAAATTCCCACGTGG
66 AACATAATAATATTAATTTTTTACAATAAAAAATTCCCACGTGG
8457820 CACAGTCAAC
Statistics
Matches: 108, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
108 98 0.91
109 10 0.09
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (109 bp):
TATCAAAATATATTTAATAAATTAAACATAAAATTAAATAAATTAATAAAATCATGAAATTTTTA
AACATAATAATATTAATTTTTTACAATAAAAAATTCCCACGTGG
Found at i:8470095 original size:93 final size:92
Alignment explanation
Indices: 8469936--8470109 Score: 235
Period size: 93 Copynumber: 1.9 Consensus size: 92
8469926 GCTATTTTTA
* * * * * * *
8469936 TAAAATGTCTAATGTGGTATTTGTATTTTGAAAATGTTCAATGTGGTGCTTGAGTTATAAATATG
1 TAAAATGTCCAATATGATATATGTATTTTGAAAATGTCCAATGTGGTACTTGACTTATAAATATG
8470001 TGTTTTTATTATGGTACCTATACTTTCC
66 TG-TTTTATTATGGTACCTATACTTTCC
*
8470029 TAAAATGTCCAATATGATATATGTATTTT-ACAAATGTCCAATGTGGTACTTGAACTT-TCAATA
1 TAAAATGTCCAATATGATATATGTATTTTGA-AAATGTCCAATGTGGTACTTG-ACTTATAAATA
8470092 TGTGTTTTATTATGGTAC
64 TGTGTTTTATTATGGTAC
8470110 ATGGTGCTAA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
92 15 0.21
93 53 0.75
94 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (92 bp):
TAAAATGTCCAATATGATATATGTATTTTGAAAATGTCCAATGTGGTACTTGACTTATAAATATG
TGTTTTATTATGGTACCTATACTTTCC
Found at i:8470252 original size:29 final size:27
Alignment explanation
Indices: 8470214--8470268 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
8470204 ACATTATATG
8470214 AAAAACTAAACATATTAAACTTATATAAA
1 AAAAACT-AA-ATATTAAACTTATATAAA
*
8470243 AAAAAGTAAATATTAAACTTATATAA
1 AAAAACTAAATATTAAACTTATATAA
8470269 GCAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.68
28 2 0.08
29 6 0.24
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (27 bp):
AAAAACTAAATATTAAACTTATATAAA
Found at i:8471345 original size:37 final size:37
Alignment explanation
Indices: 8471219--8471356 Score: 111
Period size: 37 Copynumber: 3.7 Consensus size: 37
8471209 AACTAATATT
**
8471219 ATTATTATGGTTAGTTATTAGGATTAGTAAAAACCCTA
1 ATTATTATGGTTAGTTATTATTATTAGT-AAAACCCTA
* * *** *
8471257 ATTATTAT-TTTAGTTAGTATGATTGTTAGTTTTTACACT-
1 ATTATTATGGTTAGTTA-T-T-ATTATTAG-TAAAACCCTA
* *
8471296 A-TATTATTGTTAGTTATTATTTTTAGTAAAACCCTA
1 ATTATTATGGTTAGTTATTATTATTAGTAAAACCCTA
*
8471332 ATTATTATGGTTAGTTAGTATTATT
1 ATTATTATGGTTAGTTATTATTATT
8471357 TTGAGTATAA
Statistics
Matches: 76, Mismatches: 17, Indels: 15
0.70 0.16 0.14
Matches are distributed among these distances:
35 5 0.07
36 8 0.11
37 28 0.37
38 16 0.21
39 9 0.12
40 9 0.12
41 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.13, T:0.50
Consensus pattern (37 bp):
ATTATTATGGTTAGTTATTATTATTAGTAAAACCCTA
Found at i:8471377 original size:76 final size:77
Alignment explanation
Indices: 8471218--8471383 Score: 205
Period size: 76 Copynumber: 2.2 Consensus size: 77
8471208 AAACTAATAT
* *
8471218 TATTATTATGGTTAGTTATTAGGATTAGTAAAAACCCTAATTATTATTTTAGTTAGTATGATTGT
1 TATTATTATTGTTAGTTATTAGGATTAGTAAAAACCCTAATTATTATGTTAGTTAGTATGATTGT
* * *
8471283 TAGTTTTTACAC
66 TAGTTATAAAAC
*** *
8471295 TA-TATTATTGTTAGTTATTATTTTTAGT-AAAACCCTAATTATTATGGTTAGTTAGTATTATT-
1 TATTATTATTGTTAGTTATTAGGATTAGTAAAAACCCTAATTATTAT-GTTAGTTAGTATGATTG
8471357 TTGAG-TATAAAAC
65 TT-AGTTATAAAAC
8471370 TATTATTATTGTTA
1 TATTATTATTGTTA
8471384 TTGTGTTAGT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
75 26 0.34
76 49 0.64
77 2 0.03
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (77 bp):
TATTATTATTGTTAGTTATTAGGATTAGTAAAAACCCTAATTATTATGTTAGTTAGTATGATTGT
TAGTTATAAAAC
Found at i:8477822 original size:155 final size:153
Alignment explanation
Indices: 8477567--8478279 Score: 746
Period size: 151 Copynumber: 4.7 Consensus size: 153
8477557 CAAAAAAAAA
* *
8477567 TTAGTAAAAAACCCTTATTTCGGCCCTTTGTTCGTA-TTTTTCCCCAGATTTTATTACTTTA-AA
1 TTAGTAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTCCCGA-ATTTTATTACTTTATAA
*
8477630 AAATA-A-TATTTTCTAATTTCATTATTTTACATTATTTTAGTACATTATGTTTGAAAT-TCATT
65 AAATATATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGT-ATT
8477692 AATTTAGTGTGTGTTTTAAATAAAT
129 AATTTAGTGTGTGTTTTAAATAAAT
* * *
8477717 TTAGAAAAATAACCCTTATTTCGGCCATTTGCTCGCA-TTTTTCCCGAATTTTATTACTTTCAAT
1 TTAGTAAAA-AACCCTTATTTCGGCCATTTGTTCGTATTTTTTCCCGAATTTTATTACTTT--AT
8477781 AAAAATATATTATTTTC-ATATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTA
63 AAAAATATATTATTTTCTA-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTA
* * * * ***
8477845 TTAATTAATTCTGCTTTTTTTTTTAAAAT
127 TTAATTTAGTGTG-TGTTTTAAAT-AAAT
* * ** *
8477874 TTAGTAAAAAATCTTTATTTCGG-TTTTTGTTCGTATTTTTTCTCTG-ATTTTATTAC-TT-TAA
1 TTAGTAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTC-CCGAATTTTATTACTTTATAA
* * *
8477935 AAA-ATATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACGTTGTGTTTGGAATGTATTA
65 AAATATATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTA
* * *** *
8477999 A-TTAAT-TCTGTTTTTTTTTAAT
130 ATTTAGTGTGTGTTTTAAATAAAT
* * *
8478021 TTAGTAAAAAACCCTTACTTCGGTCATTTGTTCGTATTTTTTCTCCGGATTTTATTACTTTA-AA
1 TTAGTAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTC-CCGAATTTTATTACTTTATAA
* * * *
8478085 AAATAT-TCTATTTTCTAATTTTCTAATTTTACATTATTTTAGTACATTATGTTTAAAATTTATT
65 AAATATAT-TATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATT
* *
8478149 AATTTAGTGTATTTTTTAAATAAAT
129 AATTTAGTGTGTGTTTTAAATAAAT
** * *
8478174 TTCAAAAAAATAACCCTTATTTCGGCCCTTTATTCGTATTTTTTTCCCGAATTTTATTACTTTAA
1 TT-AGTAAAA-AACCCTTATTTCGGCCATTTGTTCGTA-TTTTTTCCCGAATTTTATTACTTT--
* * *
8478239 ATAAAGAA-ATATT-TTTT-T-ATTTTTTTATCTTACATTTTTTT
61 ATAAA-AATATATTATTTTCTAATTTTATTATTTTACATTATTTT
8478280 TAGATTTTAT
Statistics
Matches: 474, Mismatches: 60, Indels: 53
0.81 0.10 0.09
Matches are distributed among these distances:
147 23 0.05
148 29 0.06
149 11 0.02
150 32 0.07
151 143 0.30
152 12 0.03
153 19 0.04
154 7 0.01
155 127 0.27
156 43 0.09
157 19 0.04
158 6 0.01
159 3 0.01
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (153 bp):
TTAGTAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTCCCGAATTTTATTACTTTATAAA
AATATATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAA
TTTAGTGTGTGTTTTAAATAAAT
Found at i:8478617 original size:4 final size:4
Alignment explanation
Indices: 8478601--8478705 Score: 82
Period size: 4 Copynumber: 26.2 Consensus size: 4
8478591 TTACCTTTAC
8478601 TTCT TT-T TT-T TTCT TTC- TT-T TTCT TTCT TCTCAT TTCCTT TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT T-TC-T TT-C-T TTCT
8478645 TTCT TTC- TT-T TTCT TTCT TCTCCT TTCCTT TTCT TTCT TTC- TT-T
1 TTCT TTCT TTCT TTCT TTCT T-T-CT TT-C-T TTCT TTCT TTCT TTCT
8478689 TTCT TTCT TTCT TTCT T
1 TTCT TTCT TTCT TTCT T
8478706 CTCCTTTCCT
Statistics
Matches: 87, Mismatches: 1, Indels: 26
0.76 0.01 0.23
Matches are distributed among these distances:
3 18 0.21
4 48 0.55
5 9 0.10
6 12 0.14
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.74
Consensus pattern (4 bp):
TTCT
Found at i:8478653 original size:34 final size:34
Alignment explanation
Indices: 8478605--8478697 Score: 168
Period size: 34 Copynumber: 2.7 Consensus size: 34
8478595 CTTTACTTCT
*
8478605 TTTTTTTTCTTTCTTTTTCTTTCTTCTCATTTCC
1 TTTTCTTTCTTTCTTTTTCTTTCTTCTCATTTCC
*
8478639 TTTTCTTTCTTTCTTTTTCTTTCTTCTCCTTTCC
1 TTTTCTTTCTTTCTTTTTCTTTCTTCTCATTTCC
8478673 TTTTCTTTCTTTCTTTTTCTTTCTT
1 TTTTCTTTCTTTCTTTTTCTTTCTT
8478698 TCTTTCTTCT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.74
Consensus pattern (34 bp):
TTTTCTTTCTTTCTTTTTCTTTCTTCTCATTTCC
Found at i:8478699 original size:14 final size:14
Alignment explanation
Indices: 8478601--8478707 Score: 99
Period size: 14 Copynumber: 7.0 Consensus size: 14
8478591 TTACCTTTAC
*
8478601 TTCTTTTTTTTTCT
1 TTCTTTCTTTTTCT
8478615 TTCTTT-TTCTTTCT
1 TTCTTTCTT-TTTCT
*
8478629 TCTCATTTCCTTTTCT
1 T-TC-TTTCTTTTTCT
8478645 TTCTTTCTTTTTCT
1 TTCTTTCTTTTTCT
8478659 TTCTTCTCCTTTCCTTTTCT
1 TTCTT-T-C--T--TTTTCT
8478679 TTCTTTCTTTTTCT
1 TTCTTTCTTTTTCT
8478693 TTCTTTCTTTCTTCT
1 TTCTTTCTTT-TTCT
8478708 CCTTTCCTTC
Statistics
Matches: 80, Mismatches: 2, Indels: 21
0.78 0.02 0.20
Matches are distributed among these distances:
13 2 0.03
14 43 0.54
15 9 0.11
16 11 0.14
17 1 0.01
18 2 0.03
19 1 0.01
20 11 0.14
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.74
Consensus pattern (14 bp):
TTCTTTCTTTTTCT
Found at i:8478712 original size:14 final size:13
Alignment explanation
Indices: 8478610--8478718 Score: 78
Period size: 14 Copynumber: 7.7 Consensus size: 13
8478600 CTTCTTTTTT
*
8478610 TTTCTTTCTTTTTC
1 TTTCTTTC-TTTCC
8478624 TTTCTTCTCATTTCC
1 TTTCTT-TC-TTTCC
*
8478639 TTTTCTTTCTTTCTT
1 -TTTCTTTCTTTC-C
8478654 TTTCTTTCTTCTCC
1 TTTCTTTCTT-TCC
8478668 TTTCCTTTTCTTT-C
1 TTT-C-TTTCTTTCC
8478682 TTTCTTTTTCTTT-C
1 TTTC--TTTCTTTCC
8478696 TTTCTTTCTTCTCC
1 TTTCTTTCTT-TCC
*
8478710 TTTCCTTCT
1 TTTCTTTCT
8478719 CTACCCCACC
Statistics
Matches: 81, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
12 6 0.07
13 2 0.02
14 49 0.60
15 12 0.15
16 12 0.15
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTCTTTCTTTCC
Found at i:8481001 original size:2 final size:2
Alignment explanation
Indices: 8480994--8481025 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8480984 GACCTTGCCT
8480994 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8481026 AACGAATCGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8481405 original size:19 final size:20
Alignment explanation
Indices: 8481377--8481415 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
8481367 TACTAGTGAT
*
8481377 TACATGTGTAAAT-TTAATA
1 TACATATGTAAATATTAATA
*
8481396 TACATATGTATATATTAATA
1 TACATATGTAAATATTAATA
8481416 AAATAGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.44
Consensus pattern (20 bp):
TACATATGTAAATATTAATA
Found at i:8483501 original size:15 final size:16
Alignment explanation
Indices: 8483483--8483512 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8483473 GAAAAAATAA
8483483 ATATTTA-TAAAAATT
1 ATATTTACTAAAAATT
8483498 ATATTTACTAAAAAT
1 ATATTTACTAAAAAT
8483513 AATGATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTTACTAAAAATT
Found at i:8483522 original size:19 final size:17
Alignment explanation
Indices: 8483475--8483522 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
8483465 ATGTGGTTGA
8483475 AAAAATAA-ATATTTAT
1 AAAAATAATATATTTAT
8483491 AAAAAT--TATATTTACT
1 AAAAATAATATATTTA-T
8483507 AAAAATAATGATATTT
1 AAAAATAAT-ATATTT
8483523 GAAATAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.26
16 13 0.48
18 1 0.04
19 6 0.22
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AAAAATAATATATTTAT
Found at i:8487706 original size:2 final size:2
Alignment explanation
Indices: 8487699--8487724 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8487689 TAGCTAATTA
8487699 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8487725 TCAAAAGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8488331 original size:219 final size:219
Alignment explanation
Indices: 8487952--8488357 Score: 704
Period size: 219 Copynumber: 1.9 Consensus size: 219
8487942 ATCGTCTTCA
*
8487952 TCGCTGTTCTATATCGAAACCTAGGCAAGTCATTGGAATCCTCTGTTTCAACCTCATTGTGGACT
1 TCGCTGTTCTATATCGAAACCTAGGCAAGTCATTGGAATCCTCTGTTTCAACCACATTGTGGACT
* * *
8488017 TCCCCTTCGTCCAGTTCCATGTCTATCATTTTGCTTCTGTATGTCGGCTGTGAGTTTGGACACTC
66 TCCCCTTCGTCCAGTTCCATGTCTATCATTTTGCTTCTGTATGTCCGCCGTGAGTTCGGACACTC
*
8488082 ATTGACTCTGGGTTCCGCCTTTTCTCCATTTTCAGACCCCGTTGCAGCAGCAGCCATCGTCTTCA
131 ATTGACTCTGGGTTCCGCCTTTTCTCCATTTTCAGAACCCGTTGCAGCAGCAGCCATCGTCTTCA
8488147 TCGACTTAAACGTTCGACGGCTGG
196 TCGACTTAAACGTTCGACGGCTGG
*
8488171 TCGCTGTTCTATATCGAAACCTAGTCAAGTCATTGGAATCCTCTGTTTCAACCACATTGTGGACT
1 TCGCTGTTCTATATCGAAACCTAGGCAAGTCATTGGAATCCTCTGTTTCAACCACATTGTGGACT
* * * *
8488236 TTCCCTTTGTCCAGTTCCATGTCTATCCTTTTGCTTCTGTATGTCCGCCGTGAGTTCGGCCACTC
66 TCCCCTTCGTCCAGTTCCATGTCTATCATTTTGCTTCTGTATGTCCGCCGTGAGTTCGGACACTC
* *
8488301 ATTGACTCTGGGTTTCGCCTTTTCTCCATTTTCAGAACCTGTTGCAGCAGCAGCCAT
131 ATTGACTCTGGGTTCCGCCTTTTCTCCATTTTCAGAACCCGTTGCAGCAGCAGCCAT
8488358 TGGTTGAACC
Statistics
Matches: 175, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
219 175 1.00
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.35
Consensus pattern (219 bp):
TCGCTGTTCTATATCGAAACCTAGGCAAGTCATTGGAATCCTCTGTTTCAACCACATTGTGGACT
TCCCCTTCGTCCAGTTCCATGTCTATCATTTTGCTTCTGTATGTCCGCCGTGAGTTCGGACACTC
ATTGACTCTGGGTTCCGCCTTTTCTCCATTTTCAGAACCCGTTGCAGCAGCAGCCATCGTCTTCA
TCGACTTAAACGTTCGACGGCTGG
Found at i:8489078 original size:11 final size:12
Alignment explanation
Indices: 8489064--8489092 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8489054 TTAAATAATA
8489064 ATTTAATA-TTT
1 ATTTAATATTTT
8489075 ATTTAATATTTT
1 ATTTAATATTTT
8489087 ATTTAA
1 ATTTAA
8489093 AATAATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTTAATATTTT
Found at i:8489796 original size:54 final size:55
Alignment explanation
Indices: 8489729--8489915 Score: 171
Period size: 55 Copynumber: 3.4 Consensus size: 55
8489719 TAATTATTTT
* *
8489729 TATGTTTAGATCGATTGTTAGGTTGGAATGCTGCTTATTTTG-ATAGATTGTTTA
1 TATGTTTAAATCGATTGTTAGGTTGGAATGCTGCTTATTTTGAATTGATTGTTTA
* * *
8489783 TATGTTTAAATCGATTGTTACGG-TGGAATACTGCTTCTTCTTTTGAATTGATTGTGTA
1 TATGTTTAAATCGATTGTTA-GGTTGG-A-A-TGCTGCTTATTTTGAATTGATTGTTTA
* * ** ** ** * * **
8489841 TATGTTTAGATGGATCATTATATTGGAATATTGGTTGTTTTGAATTGATAATTTA
1 TATGTTTAAATCGATTGTTAGGTTGGAATGCTGCTTATTTTGAATTGATTGTTTA
8489896 TATGTTTAAATCGATTGTTA
1 TATGTTTAAATCGATTGTTA
8489916 CGTAGCACGC
Statistics
Matches: 104, Mismatches: 23, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
54 22 0.21
55 38 0.37
56 2 0.02
57 13 0.12
58 29 0.28
ACGTcount: A:0.25, C:0.06, G:0.21, T:0.48
Consensus pattern (55 bp):
TATGTTTAAATCGATTGTTAGGTTGGAATGCTGCTTATTTTGAATTGATTGTTTA
Found at i:8492571 original size:37 final size:37
Alignment explanation
Indices: 8492530--8492605 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
8492520 TTATTTAATG
* *
8492530 CAATGAGACATTAACCTTACTTGATAAAGATGCTCTC
1 CAATGAGACACTAACCTTACTTGATAAAGACGCTCTC
* * *
8492567 CAATGAGACACTAACCTTATTTGTTGAAGACGCTCTC
1 CAATGAGACACTAACCTTACTTGATAAAGACGCTCTC
8492604 CA
1 CA
8492606 GTGAAATTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (37 bp):
CAATGAGACACTAACCTTACTTGATAAAGACGCTCTC
Found at i:8495966 original size:884 final size:884
Alignment explanation
Indices: 8494258--8496025 Score: 3536
Period size: 884 Copynumber: 2.0 Consensus size: 884
8494248 ATTAACATTC
8494258 ACATCATCACAGGCAAAATTTAACAGAGGGGCTAATTTGCAGGTTTCGAAATGTATAATGATTAA
1 ACATCATCACAGGCAAAATTTAACAGAGGGGCTAATTTGCAGGTTTCGAAATGTATAATGATTAA
8494323 TTTGTCCATTTTTTCAGTAGAGGGGTCAAAATGTAATTCACCCTTAAGTACAGGGGCTTCCATAG
66 TTTGTCCATTTTTTCAGTAGAGGGGTCAAAATGTAATTCACCCTTAAGTACAGGGGCTTCCATAG
8494388 TACTTTTACCAAGTTTATAAAATATATAAAGAAAATGGGTTTTATTGATGTGATAAAAAGGGAAA
131 TACTTTTACCAAGTTTATAAAATATATAAAGAAAATGGGTTTTATTGATGTGATAAAAAGGGAAA
8494453 ATATAAAACCATTTATTTCATTCCTTTCTTGCTAAAGTCCTCTACTTTTTTGCAAAGTGATCTTC
196 ATATAAAACCATTTATTTCATTCCTTTCTTGCTAAAGTCCTCTACTTTTTTGCAAAGTGATCTTC
8494518 AAGAATAATTGTTGTAAGCTATTCTAAGATGATTTAGCAATTAATTGAACCAATAAGTTTTGAGG
261 AAGAATAATTGTTGTAAGCTATTCTAAGATGATTTAGCAATTAATTGAACCAATAAGTTTTGAGG
8494583 ACAATTAGTGAATAGAAATGTGATGGCCCAAAAATAATTAAATAAGATCATACATGCATAGACTC
326 ACAATTAGTGAATAGAAATGTGATGGCCCAAAAATAATTAAATAAGATCATACATGCATAGACTC
8494648 AAAGATAGTCATATTAGAGGGACCCTCTGACATGGCTATGCTCTTAAATGGGAATGTAAATATAT
391 AAAGATAGTCATATTAGAGGGACCCTCTGACATGGCTATGCTCTTAAATGGGAATGTAAATATAT
8494713 TTATTTTTTAAAAATTTAATTGATAACACAATTTTAAATTTAACAAATTTTGAAGTTTAATTTCA
456 TTATTTTTTAAAAATTTAATTGATAACACAATTTTAAATTTAACAAATTTTGAAGTTTAATTTCA
8494778 TCAAGAGCACCCTAATTTAAATAAATTTATATTAATTATCTGTATAAGATTTTATTTATTTACTT
521 TCAAGAGCACCCTAATTTAAATAAATTTATATTAATTATCTGTATAAGATTTTATTTATTTACTT
8494843 ATTCAATCAATTATAATACGTTATTTCCATTTTTATTTTTGTAATTAATAATTACTTATTTTTAT
586 ATTCAATCAATTATAATACGTTATTTCCATTTTTATTTTTGTAATTAATAATTACTTATTTTTAT
8494908 TATTGAAAATATTTATTTTATTTTTGGGAATTTAGATTATATTTATGATAGATGTAAAGGGCATG
651 TATTGAAAATATTTATTTTATTTTTGGGAATTTAGATTATATTTATGATAGATGTAAAGGGCATG
8494973 CCTCGGCGATGCGGTAACGGAGTTGTGCAGGCCATAATTGTTTACAAAAAAAAGAAATTTACCAA
716 CCTCGGCGATGCGGTAACGGAGTTGTGCAGGCCATAATTGTTTACAAAAAAAAGAAATTTACCAA
8495038 CGTTCATATTTCCATTTAATTTTATTACTAAAAGGAAATTACTACACGTAAAAAAGTAATTAAAA
781 CGTTCATATTTCCATTTAATTTTATTACTAAAAGGAAATTACTACACGTAAAAAAGTAATTAAAA
8495103 AAAATTTATCTGTTTATATCATTATCAGACAACGAAACG
846 AAAATTTATCTGTTTATATCATTATCAGACAACGAAACG
8495142 ACATCATCACAGGCAAAATTTAACAGAGGGGCTAATTTGCAGGTTTCGAAATGTATAATGATTAA
1 ACATCATCACAGGCAAAATTTAACAGAGGGGCTAATTTGCAGGTTTCGAAATGTATAATGATTAA
8495207 TTTGTCCATTTTTTCAGTAGAGGGGTCAAAATGTAATTCACCCTTAAGTACAGGGGCTTCCATAG
66 TTTGTCCATTTTTTCAGTAGAGGGGTCAAAATGTAATTCACCCTTAAGTACAGGGGCTTCCATAG
8495272 TACTTTTACCAAGTTTATAAAATATATAAAGAAAATGGGTTTTATTGATGTGATAAAAAGGGAAA
131 TACTTTTACCAAGTTTATAAAATATATAAAGAAAATGGGTTTTATTGATGTGATAAAAAGGGAAA
8495337 ATATAAAACCATTTATTTCATTCCTTTCTTGCTAAAGTCCTCTACTTTTTTGCAAAGTGATCTTC
196 ATATAAAACCATTTATTTCATTCCTTTCTTGCTAAAGTCCTCTACTTTTTTGCAAAGTGATCTTC
8495402 AAGAATAATTGTTGTAAGCTATTCTAAGATGATTTAGCAATTAATTGAACCAATAAGTTTTGAGG
261 AAGAATAATTGTTGTAAGCTATTCTAAGATGATTTAGCAATTAATTGAACCAATAAGTTTTGAGG
8495467 ACAATTAGTGAATAGAAATGTGATGGCCCAAAAATAATTAAATAAGATCATACATGCATAGACTC
326 ACAATTAGTGAATAGAAATGTGATGGCCCAAAAATAATTAAATAAGATCATACATGCATAGACTC
8495532 AAAGATAGTCATATTAGAGGGACCCTCTGACATGGCTATGCTCTTAAATGGGAATGTAAATATAT
391 AAAGATAGTCATATTAGAGGGACCCTCTGACATGGCTATGCTCTTAAATGGGAATGTAAATATAT
8495597 TTATTTTTTAAAAATTTAATTGATAACACAATTTTAAATTTAACAAATTTTGAAGTTTAATTTCA
456 TTATTTTTTAAAAATTTAATTGATAACACAATTTTAAATTTAACAAATTTTGAAGTTTAATTTCA
8495662 TCAAGAGCACCCTAATTTAAATAAATTTATATTAATTATCTGTATAAGATTTTATTTATTTACTT
521 TCAAGAGCACCCTAATTTAAATAAATTTATATTAATTATCTGTATAAGATTTTATTTATTTACTT
8495727 ATTCAATCAATTATAATACGTTATTTCCATTTTTATTTTTGTAATTAATAATTACTTATTTTTAT
586 ATTCAATCAATTATAATACGTTATTTCCATTTTTATTTTTGTAATTAATAATTACTTATTTTTAT
8495792 TATTGAAAATATTTATTTTATTTTTGGGAATTTAGATTATATTTATGATAGATGTAAAGGGCATG
651 TATTGAAAATATTTATTTTATTTTTGGGAATTTAGATTATATTTATGATAGATGTAAAGGGCATG
8495857 CCTCGGCGATGCGGTAACGGAGTTGTGCAGGCCATAATTGTTTACAAAAAAAAGAAATTTACCAA
716 CCTCGGCGATGCGGTAACGGAGTTGTGCAGGCCATAATTGTTTACAAAAAAAAGAAATTTACCAA
8495922 CGTTCATATTTCCATTTAATTTTATTACTAAAAGGAAATTACTACACGTAAAAAAGTAATTAAAA
781 CGTTCATATTTCCATTTAATTTTATTACTAAAAGGAAATTACTACACGTAAAAAAGTAATTAAAA
8495987 AAAATTTATCTGTTTATATCATTATCAGACAACGAAACG
846 AAAATTTATCTGTTTATATCATTATCAGACAACGAAACG
8496026 CGCTACACCT
Statistics
Matches: 884, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
884 884 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (884 bp):
ACATCATCACAGGCAAAATTTAACAGAGGGGCTAATTTGCAGGTTTCGAAATGTATAATGATTAA
TTTGTCCATTTTTTCAGTAGAGGGGTCAAAATGTAATTCACCCTTAAGTACAGGGGCTTCCATAG
TACTTTTACCAAGTTTATAAAATATATAAAGAAAATGGGTTTTATTGATGTGATAAAAAGGGAAA
ATATAAAACCATTTATTTCATTCCTTTCTTGCTAAAGTCCTCTACTTTTTTGCAAAGTGATCTTC
AAGAATAATTGTTGTAAGCTATTCTAAGATGATTTAGCAATTAATTGAACCAATAAGTTTTGAGG
ACAATTAGTGAATAGAAATGTGATGGCCCAAAAATAATTAAATAAGATCATACATGCATAGACTC
AAAGATAGTCATATTAGAGGGACCCTCTGACATGGCTATGCTCTTAAATGGGAATGTAAATATAT
TTATTTTTTAAAAATTTAATTGATAACACAATTTTAAATTTAACAAATTTTGAAGTTTAATTTCA
TCAAGAGCACCCTAATTTAAATAAATTTATATTAATTATCTGTATAAGATTTTATTTATTTACTT
ATTCAATCAATTATAATACGTTATTTCCATTTTTATTTTTGTAATTAATAATTACTTATTTTTAT
TATTGAAAATATTTATTTTATTTTTGGGAATTTAGATTATATTTATGATAGATGTAAAGGGCATG
CCTCGGCGATGCGGTAACGGAGTTGTGCAGGCCATAATTGTTTACAAAAAAAAGAAATTTACCAA
CGTTCATATTTCCATTTAATTTTATTACTAAAAGGAAATTACTACACGTAAAAAAGTAATTAAAA
AAAATTTATCTGTTTATATCATTATCAGACAACGAAACG
Found at i:8508812 original size:34 final size:35
Alignment explanation
Indices: 8508772--8508845 Score: 98
Period size: 34 Copynumber: 2.1 Consensus size: 35
8508762 AGCATATATT
* *
8508772 TATACTTATCAAT-TACATGTGCCGAATGCA-CATA
1 TATACTTAT-AATCCACATATGCCGAATGCAGCATA
8508806 TATACTTATAATCCACATATGCCGAATGCATGCATA
1 TATACTTATAATCCACATATGCCGAATGCA-GCATA
8508842 TATA
1 TATA
8508846 TATATCCAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 3 0.09
34 24 0.69
36 8 0.23
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.32
Consensus pattern (35 bp):
TATACTTATAATCCACATATGCCGAATGCAGCATA
Found at i:8509067 original size:41 final size:40
Alignment explanation
Indices: 8509017--8509254 Score: 289
Period size: 41 Copynumber: 5.8 Consensus size: 40
8509007 TTAATTTAAA
*
8509017 CAGATTCACCGGCACTTAGCCTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTAAA-CCTGATT
*
8509059 CAGATCACCGACACTTAGCCTGCTAGGCTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTA-AACCTGATT
* *
8509100 CAGATCACCGGCACTTAGCCTGTTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTA-AACCTGATT
* *
8509141 TAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGGTT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTA-AACCTGATT
* *
8509182 CAGATCACCGGCACTTCGCCTGCTAGGTTTTAAAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGG-CTT-AAACCTGATT
* ** *
8509224 CAG-TACACTGGCTTTTAGCCTGCTAGACTTA
1 CAGAT-CACCGGCACTTAGCCTGCTAGGCTTA
8509255 TAGTCCGAAA
Statistics
Matches: 173, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
40 1 0.01
41 135 0.78
42 36 0.21
43 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (40 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTAAACCTGATT
Found at i:8509159 original size:82 final size:82
Alignment explanation
Indices: 8509017--8509226 Score: 330
Period size: 82 Copynumber: 2.5 Consensus size: 82
8509007 TTAATTTAAA
8509017 CAGATTCACCGGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACCGACACTTAGCCTGC
1 CAGA-TCACCGGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACCGACACTTAGCCTGC
8509082 TAGGCTTATAACCTGATT
65 TAGGCTTATAACCTGATT
* * *
8509100 CAGATCACCGGCACTTAGCCTGTTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCT
1 CAGATCACCGGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACCGACACTTAGCCTGCT
*
8509165 AGGCTTATAACCTGGTT
66 AGGCTTATAACCTGATT
* * * *
8509182 CAGATCACCGGCACTTCGCCTGCTAGGTTTTAAAACCTGATTCAG
1 CAGATCACCGGCACTTAGCCTGTTAGG-CTTAAAGCCTGATTCAG
8509227 TACACTGGCT
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
82 99 0.85
83 17 0.15
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (82 bp):
CAGATCACCGGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACCGACACTTAGCCTGCT
AGGCTTATAACCTGATT
Found at i:8510009 original size:155 final size:158
Alignment explanation
Indices: 8509823--8510131 Score: 373
Period size: 155 Copynumber: 2.0 Consensus size: 158
8509813 TACGAATATA
* * *
8509823 TTATACATATATATATGTAACATCCATACTTTTAA-TAAAATCCAAGAATTTATACTCA-TATAT
1 TTATACATATATAAATATAACATACATACTTTTAACT-AAATCCAAGAATTTAT--TCAGTATAT
* * * * *
8509886 ACATACCTATTCGAACCTCTTGTA-A-ACATATATAACATTCA-AC-ATTAACTAAATTCAA-AA
63 ACATACATATCCGAA-CT-TTATATATACAAATATAACATACATACTATTAACTAAATTCAAGAA
*
8509946 CTTATTCATGTATATACACATA-TATCCGAACT
126 CTTATACATGTATATACACATATTATCCGAACT
* *
8509978 TTATATATATATAAATATAACATACATACTTTTAACTAAATTCAAGAATTTATTCATGTATATAC
1 TTATACATATATAAATATAACATACATACTTTTAACTAAATCCAAGAATTTATTCA-GTATATAC
* * *
8510043 ATATATATCCGAACTTTATATATATAAATATAACATACATACTTTTAACTAAATTCAAGAACTTA
65 ATACATATCCGAACTTTATATATACAAATATAACATACATACTATTAACTAAATTCAAGAACTTA
*
8510108 TACATGTATATACATATATTATCC
130 TACATGTATATACACATATTATCC
8510132 ACTATTAGTT
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
153 7 0.05
154 3 0.02
155 76 0.58
156 3 0.02
157 14 0.11
158 22 0.17
159 5 0.04
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.38
Consensus pattern (158 bp):
TTATACATATATAAATATAACATACATACTTTTAACTAAATCCAAGAATTTATTCAGTATATACA
TACATATCCGAACTTTATATATACAAATATAACATACATACTATTAACTAAATTCAAGAACTTAT
ACATGTATATACACATATTATCCGAACT
Found at i:8510091 original size:78 final size:78
Alignment explanation
Indices: 8509930--8510131 Score: 343
Period size: 78 Copynumber: 2.6 Consensus size: 78
8509920 ACATTCAACA
*
8509930 TTAACTAAATTCAA-AACTTATTCATGTATATACACATATATCCGAACTTTATATATATATAAAT
1 TTAACTAAATTCAAGAACTTATTCATGTATATACATATATATCCGAAC-TT-TATATATATAAAT
8509994 ATAACATACATACTT
64 ATAACATACATACTT
*
8510009 TTAACTAAATTCAAGAATTTATTCATGTATATACATATATATCCGAACTTTATATATATAAATAT
1 TTAACTAAATTCAAGAACTTATTCATGTATATACATATATATCCGAACTTTATATATATAAATAT
8510074 AACATACATACTT
66 AACATACATACTT
*
8510087 TTAACTAAATTCAAGAACTTATACATGTATATACATATATTATCC
1 TTAACTAAATTCAAGAACTTATTCATGTATATACATATA-TATCC
8510132 ACTATTAGTT
Statistics
Matches: 117, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
78 65 0.56
79 21 0.18
80 31 0.26
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.39
Consensus pattern (78 bp):
TTAACTAAATTCAAGAACTTATTCATGTATATACATATATATCCGAACTTTATATATATAAATAT
AACATACATACTT
Found at i:8515785 original size:2 final size:2
Alignment explanation
Indices: 8515778--8515808 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8515768 CCAAACATAC
8515778 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8515809 NNNNNNNNNN
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8523983 original size:38 final size:38
Alignment explanation
Indices: 8523932--8524088 Score: 314
Period size: 38 Copynumber: 4.1 Consensus size: 38
8523922 CTACTACTAC
8523932 TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
1 TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
8523970 TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
1 TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
8524008 TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
1 TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
8524046 TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
1 TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
8524084 TACTA
1 TACTA
8524089 ACTTAAATGT
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 119 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (38 bp):
TACTACATTAATGAAGTAGAGGAGCAAGTCATCTTGCA
Found at i:8534050 original size:15 final size:17
Alignment explanation
Indices: 8534030--8534066 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8534020 ATATTAAAGA
8534030 ATAATA-TTAAA-AATC
1 ATAATACTTAAATAATC
*
8534045 ATAATACTTAAATAATT
1 ATAATACTTAAATAATC
8534062 ATAAT
1 ATAAT
8534067 TCCATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 5 0.26
17 8 0.42
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATACTTAAATAATC
Found at i:8538248 original size:12 final size:12
Alignment explanation
Indices: 8538231--8538262 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
8538221 TACCAGTGTA
8538231 ACTTTCATAATC
1 ACTTTCATAATC
*
8538243 ACTTTCATATTC
1 ACTTTCATAATC
8538255 ACTTTCAT
1 ACTTTCAT
8538263 GGTATCTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (12 bp):
ACTTTCATAATC
Found at i:8548455 original size:20 final size:19
Alignment explanation
Indices: 8548430--8548470 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
8548420 AAATTAAGAG
8548430 TTATTT-TTTAATTTCATGTA
1 TTATTTATTT-ATTTCAT-TA
8548450 TTATTTATTTATTTCATTA
1 TTATTTATTTATTTCATTA
8548469 TT
1 TT
8548471 TTTCACATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 13 0.65
21 3 0.15
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (19 bp):
TTATTTATTTATTTCATTA
Found at i:8549800 original size:12 final size:13
Alignment explanation
Indices: 8549783--8549812 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
8549773 AATATGTCTA
8549783 AATTTAATA-TTT
1 AATTTAATATTTT
8549795 AATTTAATATTTT
1 AATTTAATATTTT
8549808 AATTT
1 AATTT
8549813 TAATTTGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
AATTTAATATTTT
Found at i:8550214 original size:29 final size:31
Alignment explanation
Indices: 8550182--8550247 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 31
8550172 TATAAATTTG
*
8550182 AAATTTAA-TCTCTATACTTTT-AT-TTTCAA
1 AAATTTAATTCT-TATACTTTTCATATTACAA
*
8550211 AAATTTAATTCTTTTACTTTTCATATTACAA
1 AAATTTAATTCTTATACTTTTCATATTACAA
8550242 AAATTT
1 AAATTT
8550248 GTTGGTGTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 16 0.50
30 5 0.16
31 11 0.34
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (31 bp):
AAATTTAATTCTTATACTTTTCATATTACAA
Found at i:8552756 original size:48 final size:46
Alignment explanation
Indices: 8552653--8552745 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
8552643 TGACACATCA
* *
8552653 ACACATATATAAAAGTTTTATTGATATTAAATACTAAGCCATATCT
1 ACACATATATAAAAGTTTCATTGATATCAAATACTAAGCCATATCT
8552699 ACACATATATAAAAGTTTCATTGATATCAAATACTAAGCCATATCT
1 ACACATATATAAAAGTTTCATTGATATCAAATACTAAGCCATATCT
8552745 A
1 A
8552746 TACACTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.34
Consensus pattern (46 bp):
ACACATATATAAAAGTTTCATTGATATCAAATACTAAGCCATATCT
Found at i:8557234 original size:9 final size:9
Alignment explanation
Indices: 8557220--8557249 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8557210 ATTAAATAGT
8557220 TCGAGTTAA
1 TCGAGTTAA
8557229 TCGAGTTAA
1 TCGAGTTAA
*
8557238 TCAAGTTAA
1 TCGAGTTAA
8557247 TCG
1 TCG
8557250 GATCAACTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (9 bp):
TCGAGTTAA
Found at i:8558796 original size:77 final size:78
Alignment explanation
Indices: 8558668--8558827 Score: 313
Period size: 77 Copynumber: 2.1 Consensus size: 78
8558658 CTTACCATAT
8558668 ATATATATATATATATATATTTGTAACGGGAAAATAAACATTTGTAATGAAAGCACTAAGGTTAT
1 ATATATATATATATATATATTTGTAACGGGAAAATAAACATTTGTAATGAAAGCACTAAGGTTAT
8558733 GTCCATCCTGGAA
66 GTCCATCCTGGAA
8558746 ATATATATATATATATATA-TTGTAACGGGAAAATAAACATTTGTAATGAAAGCACTAAGGTTAT
1 ATATATATATATATATATATTTGTAACGGGAAAATAAACATTTGTAATGAAAGCACTAAGGTTAT
8558810 GTCCATCCTGGAA
66 GTCCATCCTGGAA
8558823 ATATA
1 ATATA
8558828 ACTGTTAAGG
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 63 0.77
78 19 0.23
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (78 bp):
ATATATATATATATATATATTTGTAACGGGAAAATAAACATTTGTAATGAAAGCACTAAGGTTAT
GTCCATCCTGGAA
Found at i:8559238 original size:21 final size:22
Alignment explanation
Indices: 8559196--8559240 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8559186 ACACCAAAAC
* *
8559196 AGGCTTTTAGCGGTGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
8559218 AGGCCTTTAGCGGCG-TTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
8559239 AG
1 AG
8559241 CGCCGCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.11, C:0.16, G:0.29, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:8559335 original size:43 final size:44
Alignment explanation
Indices: 8559283--8559510 Score: 234
Period size: 43 Copynumber: 5.3 Consensus size: 44
8559273 GCGTCGCAAA
*
8559283 AAACGCCGCTAAAGACCAAT-ACATTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGACCAATGACATTTAGCGGCGCTTTTCCCAC
* * * *
8559326 AAACGCCGCTAAAGACCAAT-ACCTTTAGCGGTGTTTTTCTCAC
1 AAACGCCGCTAAAGACCAATGACATTTAGCGGCGCTTTTCCCAC
* * * *
8559369 AAACGCCGCAAAAG-CCCATGACCA-TTAGCGTCGCTTTTCCCAT
1 AAACGCCGCTAAAGACCAATGA-CATTTAGCGGCGCTTTTCCCAC
* * *
8559412 AAATGCCGCTAAAG-CCCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAATGACATTTAGCGGCGCTTTTCCCAC
* * * * * *
8559455 AAACGCCGCTAAAGACC-ATGACCTTTAGTGACGCTTCTCGCAA
1 AAACGCCGCTAAAGACCAATGACATTTAGCGGCGCTTTTCCCAC
*
8559498 AAACGCTGCTAAA
1 AAACGCCGCTAAA
8559511 AACATAGCCT
Statistics
Matches: 156, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
42 5 0.03
43 148 0.95
44 3 0.02
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.22
Consensus pattern (44 bp):
AAACGCCGCTAAAGACCAATGACATTTAGCGGCGCTTTTCCCAC
Found at i:8559490 original size:86 final size:86
Alignment explanation
Indices: 8559283--8559490 Score: 258
Period size: 86 Copynumber: 2.4 Consensus size: 86
8559273 GCGTCGCAAA
* *
8559283 AAACGCCGCTAAAGACCAAT-ACATTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAATA
1 AAACGCCGCTAAAGACC-ATGACCTTTAGCGACGCTTTTACCACAAACGCCGCTAAAGACCAATA
* * *
8559347 CCTTTAGCGGTGTTTTTCTCAC
65 CCTTTAGCGGCGCTTTTCCCAC
* * * * * * * *
8559369 AAACGCCGCAAAAGCCCATGACCATTAGCGTCGCTTTTCCCATAAATGCCGCTAAAG-CCCATGA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTACCACAAACGCCGCTAAAGACCAAT-A
8559433 CCTTTAGCGGCGCTTTTCCCAC
65 CCTTTAGCGGCGCTTTTCCCAC
*
8559455 AAACGCCGCTAAAGACCATGACCTTTAGTGACGCTT
1 AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTT
8559491 CTCGCAAAAA
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
85 6 0.06
86 97 0.94
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (86 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTACCACAAACGCCGCTAAAGACCAATAC
CTTTAGCGGCGCTTTTCCCAC
Found at i:8561541 original size:15 final size:15
Alignment explanation
Indices: 8561521--8561550 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8561511 GCATTGACAC
*
8561521 AAAAAATTCAGACCA
1 AAAAAATTCAAACCA
8561536 AAAAAATTCAAACCA
1 AAAAAATTCAAACCA
8561551 TATGGCTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.20, G:0.03, T:0.13
Consensus pattern (15 bp):
AAAAAATTCAAACCA
Found at i:8563771 original size:41 final size:41
Alignment explanation
Indices: 8563722--8563883 Score: 270
Period size: 41 Copynumber: 4.0 Consensus size: 41
8563712 AACTAAAAGC
* *
8563722 CTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGAT
1 CTGAGCATCAGCGGCGCTTTTTCAAAAACGCCGCTAAAGAT
* *
8563763 CTGAGCATTAGCAGCGCTTTTTCAAAAACGCCGCTAAAGAT
1 CTGAGCATCAGCGGCGCTTTTTCAAAAACGCCGCTAAAGAT
*
8563804 CTTAGCATCAGCGGCGCTTTTTCAAAAACGCCGCTAAAGAT
1 CTGAGCATCAGCGGCGCTTTTTCAAAAACGCCGCTAAAGAT
*
8563845 CTGAGCATCAGCGGCGTTTTTTCAAAAACGCCGCTAAAG
1 CTGAGCATCAGCGGCGCTTTTTCAAAAACGCCGCTAAAG
8563884 CCCCGAAAGG
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 114 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (41 bp):
CTGAGCATCAGCGGCGCTTTTTCAAAAACGCCGCTAAAGAT
Found at i:8564252 original size:20 final size:19
Alignment explanation
Indices: 8564229--8564267 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8564219 AAAAACAAAA
*
8564229 AAAAACCTGCAAAAAGCTGG
1 AAAAACCTG-AAAAAACTGG
*
8564249 AAAAAGCTGAAAAAACTGG
1 AAAAACCTGAAAAAACTGG
8564268 GTCAGGCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.54, C:0.15, G:0.21, T:0.10
Consensus pattern (19 bp):
AAAAACCTGAAAAAACTGG
Found at i:8564554 original size:12 final size:12
Alignment explanation
Indices: 8564537--8564580 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
8564527 TTTTAGTTAG
*
8564537 TATTATTATTTT
1 TATTATTATTGT
8564549 TATTATTATTGT
1 TATTATTATTGT
* *
8564561 TATTGTTGTTGT
1 TATTATTATTGT
*
8564573 TAGTATTA
1 TATTATTA
8564581 AGATGTTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (12 bp):
TATTATTATTGT
Found at i:8565396 original size:18 final size:18
Alignment explanation
Indices: 8565365--8565407 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
8565355 GATATGGTTG
* *
8565365 GTGGTGAAGTAGAAGGTA
1 GTGGCGAAGAAGAAGGTA
* *
8565383 TTGGCGAAGAAGAATGTA
1 GTGGCGAAGAAGAAGGTA
8565401 GTGGCGA
1 GTGGCGA
8565408 TCATTGGGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.42, T:0.21
Consensus pattern (18 bp):
GTGGCGAAGAAGAAGGTA
Found at i:8570778 original size:24 final size:24
Alignment explanation
Indices: 8570749--8570836 Score: 72
Period size: 24 Copynumber: 3.5 Consensus size: 24
8570739 ATGTACATAT
8570749 CATAACATAAATACATATAATGTA
1 CATAACATAAATACATATAATGTA
*
8570773 CATAACATCAA-A-ATATATATGCTA
1 CATAACATAAATACATATA-ATG-TA
* * *
8570797 AATAAAATATTAAAATACGTATAATGTA
1 CAT--AACA-T-AAATACATATAATGTA
8570825 CATAACATAAAT
1 CATAACATAAAT
8570837 TTTTAACATA
Statistics
Matches: 49, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
22 5 0.10
23 4 0.08
24 18 0.37
25 1 0.02
26 6 0.12
27 1 0.02
28 6 0.12
29 4 0.08
30 4 0.08
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.30
Consensus pattern (24 bp):
CATAACATAAATACATATAATGTA
Found at i:8570946 original size:35 final size:34
Alignment explanation
Indices: 8570895--8570967 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 34
8570885 CATTTTATTC
8570895 TTTTTTTTTCCTTCCTTCCCTCTTC-TT-CTTCT
1 TTTTTTTTTCCTTCCTTCCCTCTTCTTTCCTTCT
* *
8570927 TTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCT
1 TTTTTTTTTC-C-T-TCCTTCCCTCTTCTTTCCTTCT
8570964 TTTT
1 TTTT
8570968 CTTTCTTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 10 0.29
33 1 0.03
34 1 0.03
35 11 0.32
36 2 0.06
37 9 0.26
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (34 bp):
TTTTTTTTTCCTTCCTTCCCTCTTCTTTCCTTCT
Found at i:8571139 original size:24 final size:25
Alignment explanation
Indices: 8571107--8571153 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
8571097 TGTTTTTTGT
8571107 ATATTTTGGT-AATTAAAAAAAATA
1 ATATTTTGGTAAATTAAAAAAAATA
8571131 ATATTTTGGTAAATTAAAAAAAA
1 ATATTTTGGTAAATTAAAAAAAA
8571154 GAGATAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (25 bp):
ATATTTTGGTAAATTAAAAAAAATA
Found at i:8577775 original size:22 final size:22
Alignment explanation
Indices: 8577732--8577784 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
8577722 TTTTTTTAAA
* *
8577732 AATATTTATATTATTTTAATTT
1 AATATTTATATAATTTAAATTT
8577754 AATATTTA-ATAATTTAATATTT
1 AATATTTATATAATTTAA-ATTT
**
8577776 TTTATTTAT
1 AATATTTAT
8577785 TAAAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
AATATTTATATAATTTAAATTT
Found at i:8578292 original size:34 final size:34
Alignment explanation
Indices: 8578253--8578325 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
8578243 CAAATGATAG
8578253 TGTTAATTATTTCCATTAATACATGACATGTATA
1 TGTTAATTATTTCCATTAATACATGACATGTATA
8578287 TGTTAATTATTTCCATTAATACATGACATGTATA
1 TGTTAATTATTTCCATTAATACATGACATGTATA
8578321 TGTTA
1 TGTTA
8578326 TAAACTAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.45
Consensus pattern (34 bp):
TGTTAATTATTTCCATTAATACATGACATGTATA
Found at i:8582645 original size:28 final size:28
Alignment explanation
Indices: 8582605--8582682 Score: 120
Period size: 28 Copynumber: 2.8 Consensus size: 28
8582595 CTCACTCATT
* *
8582605 TGTTAGAAAGAGTACGGAATCTAAGGAA
1 TGTTAGAAAGAGTACAGAATCTAAAGAA
*
8582633 TGTTAGAAGGAGTACAGAATCTAAAGAA
1 TGTTAGAAAGAGTACAGAATCTAAAGAA
*
8582661 TGTTAGAAAGAGTACACAATCT
1 TGTTAGAAAGAGTACAGAATCT
8582683 GTAAATAGAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (28 bp):
TGTTAGAAAGAGTACAGAATCTAAAGAA
Found at i:8582919 original size:138 final size:138
Alignment explanation
Indices: 8582668--8582945 Score: 529
Period size: 138 Copynumber: 2.0 Consensus size: 138
8582658 GAATGTTAGA
8582668 AAGAGTACACAATCTGTAAATAGATACAATTTCTGCTCTGCTATGGTTTCTATCCTTGCAGCTAA
1 AAGAGTACACAATCTGTAAATAGATACAATTTCTGCTCTGCTATGGTTTCTATCCTTGCAGCTAA
*
8582733 AAAGGATAACTTTTAGTTATTTCCCTCTCACATTTCTAAAGTTAACGTTTTCATCACTTATTTTT
66 AAAGGATAACTTTTAGTTATTTCCCTCTCACATTTCTAAAATTAACGTTTTCATCACTTATTTTT
*
8582798 GTCAGGTT
131 GTCAAGTT
8582806 AAGAGTACACAATCTGTAAATAGATACAATTTCTGCTCTGCTATGGTTTCTATCCTTGCAGCTAA
1 AAGAGTACACAATCTGTAAATAGATACAATTTCTGCTCTGCTATGGTTTCTATCCTTGCAGCTAA
*
8582871 AAAGGATAACTTTTAGTTATTTCCCTCTCACATTTCTAAAATTTACGTTTTCATCACTTATTTTT
66 AAAGGATAACTTTTAGTTATTTCCCTCTCACATTTCTAAAATTAACGTTTTCATCACTTATTTTT
8582936 GTCAAGTT
131 GTCAAGTT
8582944 AA
1 AA
8582946 CGTTTTCATC
Statistics
Matches: 137, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
138 137 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (138 bp):
AAGAGTACACAATCTGTAAATAGATACAATTTCTGCTCTGCTATGGTTTCTATCCTTGCAGCTAA
AAAGGATAACTTTTAGTTATTTCCCTCTCACATTTCTAAAATTAACGTTTTCATCACTTATTTTT
GTCAAGTT
Found at i:8596472 original size:23 final size:21
Alignment explanation
Indices: 8596444--8596488 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
8596434 AATTTGAAGG
*
8596444 ACCAAACTCTAATAAATTTTTAT
1 ACCAAA-TCT-ATAAATATTTAT
*
8596467 ACCAAATCTGTAAATATTTAT
1 ACCAAATCTATAAATATTTAT
8596488 A
1 A
8596489 TTTAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 3 0.15
23 6 0.30
ACGTcount: A:0.44, C:0.16, G:0.02, T:0.38
Consensus pattern (21 bp):
ACCAAATCTATAAATATTTAT
Found at i:8596613 original size:48 final size:48
Alignment explanation
Indices: 8596537--8596632 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
8596527 CAAAACCGCC
8596537 TTTCCTGATACCACTAGAAATCGAGTTGTTACAACGATAACTTTTCTT
1 TTTCCTGATACCACTAGAAATCGAGTTGTTACAACGATAACTTTTCTT
* *
8596585 TTTCCTGATACCACTAGAAATCGGGTTGTTACAATGATAACTTTTCTT
1 TTTCCTGATACCACTAGAAATCGAGTTGTTACAACGATAACTTTTCTT
8596633 ATCAAGTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (48 bp):
TTTCCTGATACCACTAGAAATCGAGTTGTTACAACGATAACTTTTCTT
Found at i:8600671 original size:45 final size:45
Alignment explanation
Indices: 8600620--8600710 Score: 114
Period size: 45 Copynumber: 2.0 Consensus size: 45
8600610 AGGAAGTACC
* *
8600620 ACAAGTAAAGTTAAAGGTTTAACAAGTGT-TATATAGGG-TATAATA
1 ACAAGTAAAGTCAAAAG-TTAACAAGTGTAT-TATAGGGTTATAATA
**
8600665 ACAAGTAGGGTCAAAAGTTAACAAGTGTATTATAGGGTTATAATA
1 ACAAGTAAAGTCAAAAGTTAACAAGTGTATTATAGGGTTATAATA
8600710 A
1 A
8600711 ATAATAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.30
Consensus pattern (45 bp):
ACAAGTAAAGTCAAAAGTTAACAAGTGTATTATAGGGTTATAATA
Found at i:8607131 original size:300 final size:301
Alignment explanation
Indices: 8606588--8607172 Score: 879
Period size: 300 Copynumber: 1.9 Consensus size: 301
8606578 ATAGGCCTTC
8606588 TCCAAATCGATCTTAATAACCATCCATATTTTGTGTTTGCTTCTCATGGAATAAATAACTTCTTG
1 TCCAAATCGATCTTAATAACCATCCATATTTTGTGTTTGCTTCTCATGGAATAAATAACTTCTTG
* * * *
8606653 GACGACTATGATATTGTTAGTGATGTTCCTTCCAGCAAAAAAACCCACCTGTTCTAGGTCAATGA
66 GACGACTATGATATTGTTAGTGATATTACTTCCAGCAAAAAAACCCACATGTTCTAGGCCAATGA
* * * * * *
8606718 TTCTAGGAAAAACAACCTTATATTTGTTCGGAATGGTATTTATGACTTGCATGTAAAGAACTGAA
131 TTCTAGGAAAAACAACCTTATATCTATTCAGAATGATATTTAGGACCTGCATGTAAAGAACTGAA
* *
8606783 CACAAGTTTATTGGGCGAAATTGTGCAAACTTTGTGCAATTAAAGGGTAGAAGGGATATATTAGA
196 CACAAGTTTATTGGGCGAAATTGTGCAAACTTTGTGCAATTAAAGGGTAGAAGGGATATATCAAA
8606848 GGGTACTTTATTGTCATGGAATTAACAGGCATAATAGCTTA
261 GGGTACTTTATTGTCATGGAATTAACAGGCATAATAGCTTA
* * ** * *
8606889 TCCAAATCTATCTTGATGGCCATCCATCTTTTGTGTTTGCTTCTCATGG-ATGAATAACTTCTTG
1 TCCAAATCGATCTTAATAACCATCCATATTTTGTGTTTGCTTCTCATGGAATAAATAACTTCTTG
* * * * *
8606953 GGCGATTATGATATTGTTAGTGATATTACTTCCAG-AAATAAAACCCGCATTTTCTGGGCCAATG
66 GACGACTATGATATTGTTAGTGATATTACTTCCAGCAAA-AAAACCCACATGTTCTAGGCCAATG
* *
8607017 ATTCTAGGAAAAACAACCTTATATCTATTCAGAATGATCTTTAGGACCTGCTTGTAAAGAACTGA
130 ATTCTAGGAAAAACAACCTTATATCTATTCAGAATGATATTTAGGACCTGCATGTAAAGAACTGA
* *
8607082 ACACAAGTTTATTGGGTGAAATTGTGCAAAGTTCT-TGCAATTAAAGGGTAGAAGGGATATATCA
195 ACACAAGTTTATTGGGCGAAATTGTGCAAACTT-TGTGCAATTAAAGGGTAGAAGGGATATATCA
*
8607146 AAGGGTATTTTATTGTCATGGAATTAA
259 AAGGGTACTTTATTGTCATGGAATTAA
8607173 AAGGTAGAAT
Statistics
Matches: 254, Mismatches: 28, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
299 3 0.01
300 206 0.81
301 45 0.18
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (301 bp):
TCCAAATCGATCTTAATAACCATCCATATTTTGTGTTTGCTTCTCATGGAATAAATAACTTCTTG
GACGACTATGATATTGTTAGTGATATTACTTCCAGCAAAAAAACCCACATGTTCTAGGCCAATGA
TTCTAGGAAAAACAACCTTATATCTATTCAGAATGATATTTAGGACCTGCATGTAAAGAACTGAA
CACAAGTTTATTGGGCGAAATTGTGCAAACTTTGTGCAATTAAAGGGTAGAAGGGATATATCAAA
GGGTACTTTATTGTCATGGAATTAACAGGCATAATAGCTTA
Found at i:8611959 original size:50 final size:50
Alignment explanation
Indices: 8611844--8612130 Score: 354
Period size: 50 Copynumber: 5.9 Consensus size: 50
8611834 GATAATAACA
* * ** *
8611844 TGCCAAAGCCATGTCCCAGATATGGTCTTACATGGGATGTTCTCATGTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * **
8611895 TGCCCATGCTATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
8611945 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
8611995 TGCCAATGCCATGTTCCAGTCATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
8612045 TGCCAACGCCATGTCCCAGACAT-G---TA-A--GAACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
8612088 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
8612131 NNNNNNNNNN
Statistics
Matches: 201, Mismatches: 28, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
43 35 0.17
44 1 0.00
45 1 0.00
46 2 0.01
47 2 0.01
48 1 0.00
49 1 0.00
50 127 0.63
51 31 0.15
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:8615012 original size:18 final size:16
Alignment explanation
Indices: 8614972--8615070 Score: 69
Period size: 15 Copynumber: 6.1 Consensus size: 16
8614962 GAAATGATAA
8614972 TAAATAATAATAA-AG
1 TAAATAATAATAATAG
*
8614987 TAAGTAATAATAATAG
1 TAAATAATAATAATAG
*
8615003 ATACAATAATAGTAATAG
1 -TA-AATAATAATAATAG
* * *
8615021 CAATATTAAAAATAA-AA
1 TAA-A-TAATAATAATAG
* *
8615038 TAAAAAATAATGATAG
1 TAAATAATAATAATAG
*
8615054 TAAA-AATAATGATAG
1 TAAATAATAATAATAG
8615069 TA
1 TA
8615071 CTATTGAAAT
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
15 31 0.47
16 9 0.14
17 7 0.11
18 19 0.29
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.27
Consensus pattern (16 bp):
TAAATAATAATAATAG
Found at i:8616005 original size:36 final size:36
Alignment explanation
Indices: 8615958--8616038 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 36
8615948 AGGGCGACTT
*
8615958 GCTGCAACGTTCGCGGAGTTGCTGTGCATGGGTGAG
1 GCTGCTACGTTCGCGGAGTTGCTGTGCATGGGTGAG
* *
8615994 GCTGCTACGTTCGCGGAGTTGCTTTGCGTGGGTGAG
1 GCTGCTACGTTCGCGGAGTTGCTGTGCATGGGTGAG
*
8616030 ACTGCTACG
1 GCTGCTACG
8616039 ACAGAGGCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.12, C:0.21, G:0.40, T:0.27
Consensus pattern (36 bp):
GCTGCTACGTTCGCGGAGTTGCTGTGCATGGGTGAG
Done.