Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 30 of 141
Found at i:9949786 original size:74 final size:75
Alignment explanation
Indices: 9949634--9949825 Score: 260
Period size: 74 Copynumber: 2.5 Consensus size: 75
9949624 GTATGTTTAT
** * * *
9949634 AAAAAATGAATAAATTGTTTGCGTGCATTGTATTGTATTGTTACATCAATAATCTACTTATTTAC
1 AAAAAATGAATAAATTGTTTGTTTGTATTGTATTGTATTGTTAAATCAATAATATACTTATTTAC
**
9949699 ATTTTAT-CG
66 ATTTTATAAA
*
9949708 AAAAAATGAATAAATTGTTTGTTTGTATTGTATTGTATTTTTAAATCAATAATATACTTATTTAC
1 AAAAAATGAATAAATTGTTTGTTTGTATTGTATTGTATTGTTAAATCAATAATATACTTATTTAC
9949773 ATTTTATAAAA
66 ATTTTAT-AAA
* * *
9949784 AAAAAAGAGAATAGATTGTTTGTTTATATTGTATTGTATTGT
1 AAAAAA-TGAATAAATTGTTTGTTTGTATTGTATTGTATTGT
9949826 ATCCTGATCA
Statistics
Matches: 103, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
74 66 0.64
76 6 0.06
77 31 0.30
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.45
Consensus pattern (75 bp):
AAAAAATGAATAAATTGTTTGTTTGTATTGTATTGTATTGTTAAATCAATAATATACTTATTTAC
ATTTTATAAA
Found at i:9950166 original size:30 final size:31
Alignment explanation
Indices: 9950132--9950195 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
9950122 ACTTATTTTA
*
9950132 TTGTTAA-TTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTTATTATTATTTTAAAGGCAT
*
9950162 TTGTTAATTTTTATTATTATTTTAGAGGCAT
1 TTGTTAATTTTTATTATTATTTTAAAGGCAT
9950193 TTG
1 TTG
9950196 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.58
Consensus pattern (31 bp):
TTGTTAATTTTTATTATTATTTTAAAGGCAT
Found at i:9952347 original size:20 final size:20
Alignment explanation
Indices: 9952306--9952351 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
9952296 ATTTCCCAAG
**
9952306 GTATCAATACATAGGTTGAA
1 GTATCAATACATACCTTGAA
9952326 GTATCAATACATACCTCT-AA
1 GTATCAATACATACCT-TGAA
9952346 GTATCA
1 GTATCA
9952352 GTACTTAAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (20 bp):
GTATCAATACATACCTTGAA
Found at i:9957045 original size:72 final size:72
Alignment explanation
Indices: 9956928--9957080 Score: 252
Period size: 72 Copynumber: 2.1 Consensus size: 72
9956918 AACTAGCTTT
** * *
9956928 CTCGACATTGACAAATTTGACATATAACTCTAGTATAACATTTCCAATAGAGCAATGTGTATATA
1 CTCGACATCAACAAATTTGAAATATAACTCTAGTATAACATTTCCAATAGAGCAATGTGTATAGA
9956993 GCATTAA
66 GCATTAA
* *
9957000 CTCGACATCAACAAATTTGAAATATAGCTCTAGTATAACATTTCCAATAGAGCAATGTGTATCGA
1 CTCGACATCAACAAATTTGAAATATAACTCTAGTATAACATTTCCAATAGAGCAATGTGTATAGA
9957065 GCATTAA
66 GCATTAA
9957072 CTCGACATC
1 CTCGACATC
9957081 CATTGTAACA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (72 bp):
CTCGACATCAACAAATTTGAAATATAACTCTAGTATAACATTTCCAATAGAGCAATGTGTATAGA
GCATTAA
Found at i:9958510 original size:11 final size:13
Alignment explanation
Indices: 9958494--9958525 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9958484 TTTTATGGAT
9958494 AAATTTCG-T-AA
1 AAATTTCGTTCAA
9958505 AAATTTCGTTCAA
1 AAATTTCGTTCAA
9958518 AAATTTCG
1 AAATTTCG
9958526 ACGTTTGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 1 0.05
13 10 0.53
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (13 bp):
AAATTTCGTTCAA
Found at i:9959504 original size:33 final size:33
Alignment explanation
Indices: 9959435--9959595 Score: 129
Period size: 33 Copynumber: 4.7 Consensus size: 33
9959425 ATGTGAAGGG
*
9959435 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
9959462 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
9959495 GGTTGCTAAGTGCTGATTCCACC-ATATCTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGA-ATC-----AT-TG---GT
*
9959538 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
9959571 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
9959596 TAACGGTTAA
Statistics
Matches: 110, Mismatches: 5, Indels: 31
0.75 0.03 0.21
Matches are distributed among these distances:
27 22 0.20
31 2 0.02
32 2 0.02
33 41 0.37
34 9 0.08
36 2 0.02
37 1 0.01
39 2 0.02
40 2 0.02
42 5 0.05
43 22 0.20
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:9966358 original size:39 final size:39
Alignment explanation
Indices: 9966287--9966416 Score: 188
Period size: 39 Copynumber: 3.3 Consensus size: 39
9966277 ATAGAATATC
* * *
9966287 GATTATACTGAATGTTTGCTCAAATGAGCATTATCCACT
1 GATTATACTAAATGCTTGCTCAAACGAGCATTATCCACT
* * *
9966326 GATTGTACTAAATGCTTGCTCAAACAAACATTATCCACT
1 GATTATACTAAATGCTTGCTCAAACGAGCATTATCCACT
*
9966365 GATTATACTAAATGCTTGCTCAAACGAGTATTATCCACT
1 GATTATACTAAATGCTTGCTCAAACGAGCATTATCCACT
*
9966404 AATTATACTAAAT
1 GATTATACTAAAT
9966417 AAGATTTTCT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (39 bp):
GATTATACTAAATGCTTGCTCAAACGAGCATTATCCACT
Found at i:9969633 original size:31 final size:31
Alignment explanation
Indices: 9969587--9969657 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
9969577 GACTCTCGAA
* *
9969587 TTTTCAAAAACTTTATCCTAAAATTCTCAGG
1 TTTTCAGAAATTTTATCCTAAAATTCTCAGG
* * * * *
9969618 TTTTTAGAAATTTTATCTTGAGATTCTCGGG
1 TTTTCAGAAATTTTATCCTAAAATTCTCAGG
9969649 TTTTCAGAA
1 TTTTCAGAA
9969658 TTCAATCTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.44
Consensus pattern (31 bp):
TTTTCAGAAATTTTATCCTAAAATTCTCAGG
Found at i:9980885 original size:652 final size:652
Alignment explanation
Indices: 9979635--9980934 Score: 2271
Period size: 652 Copynumber: 2.0 Consensus size: 652
9979625 TTGATACAAC
* *
9979635 AAGAGAATGGTTATTTTACTTACCCCTCGGTTCTATTACAACGTGAGATGACTTATTTTGTGTAT
1 AAGAGAATAGTTATTTTACTTACCCCTCGGTTCTATTACAACGTGAGATGACTTATCTTGTGTAT
* *
9979700 TTCTTGACAGATTTTTCCCAGCATCGCAAGCAGCTGAACTTAAAAGAGACATAGTGGGAATTTGC
66 TTCTTGACAAATTTTTCCCAACATCGCAAGCAGCTGAACTTAAAAGAGACATAGTGGGAATTTGC
9979765 CAAATGGAGAGTGAATCGCTCTATGACTATTGGGAGCGGTACAAAAATCTGTGTGCAAGTTGTCC
131 CAAATGGAGAGTGAATCGCTCTATGACTATTGGGAGCGGTACAAAAATCTGTGTGCAAGTTGTCC
9979830 TCAACACAGTTTGACCGAACAATCACTTCTACAGTATTTCTACGAGGGTTTGCTCCCTATGAAAA
196 TCAACACAGTTTGACCGAACAATCACTTCTACAGTATTTCTACGAGGGTTTGCTCCCTATGAAAA
9979895 TGAAGATGATTGACGCTGCTAATGGAGGGGCACTTGTCAATATGACTCCTCAAAGGGCAAGAGAA
261 TGAAGATGATTGACGCTGCTAATGGAGGGGCACTTGTCAATATGACTCCTCAAAGGGCAAGAGAA
* * * ** *
9979960 TTGATATCCACCATGGCGGCAAATTTTCAATAGTATCGACCGAATTCGGAACCCATAAGACGAGT
326 TTGATATCCACCATGGCGGCAAATTCTCAACAGTATCGACCAAATTCAAAACCCACAAGACGAGT
* * *
9980025 TAATGGGGTAAACGTTTCATTCTTAGAAGATAAATTGGATAGGCTTACTAATATTGTTCAATCTT
391 TAATGGGGTAAACGTTTCATCCTTAAAAGATAAATTAGATAGGCTTACTAATATTGTTCAATCTT
* *
9980090 TACTTACAGAAAAGAAGAATCTGACCCAACTGTGTGGAATTTGTACTATGTTTGAACATCCGATG
456 TACTTACAGAAAAGAAGAATCTGACCCAACTGTGTGGAATTTGTACTACGTTTGAACATCCAATG
9980155 GATTTGTGCCCAATCATTAACGACAATTCAATGGCACATGTTGATGCTGTTGGAGGTTTTCTAGG
521 GATTTGTGCCCAATCATTAACGACAATTCAATGGCACATGTTGATGCTGTTGGAGGTTTTCTAGG
*
9980220 ACCTCCACAAAGACGCTATGATCCTTTCTCCAACACTTATAATCCCGAGTGGAATGATCATCCTT
586 ACCTCCACAAAGACGCTATGATCCTTTCTCCAACACTTATAATCCCGAGTGGAAGGATCATCCTT
9980285 AG
651 AG
9980287 AAGAGAATAGTTATTTTACTTACCCC-CTGGTTCTATTACAACGTGAGATGACTTATCTTGTGTA
1 AAGAGAATAGTTATTTTACTTACCCCTC-GGTTCTATTACAACGTGAGATGACTTATCTTGTGTA
* ** *
9980351 TTTCTTGACAAATTTTTCCCAACATTGTGAGTAGCTGAACTTAAAAGAGACATAGTGGGAATTTG
65 TTTCTTGACAAATTTTTCCCAACATCGCAAGCAGCTGAACTTAAAAGAGACATAGTGGGAATTTG
9980416 CCAAATGGAGAGTGAATCGCTCTATGACTATTGGGAGCGGTACAAAAATCTGTGTGCAAGTTGTC
130 CCAAATGGAGAGTGAATCGCTCTATGACTATTGGGAGCGGTACAAAAATCTGTGTGCAAGTTGTC
* * * * *
9980481 CTCAACACAGTTTGACCGAGCAATCACTTCTTCAGTATTTCTATGAGGGTTTGCTCCTTATGGAA
195 CTCAACACAGTTTGACCGAACAATCACTTCTACAGTATTTCTACGAGGGTTTGCTCCCTATGAAA
* *
9980546 ATGAAGATGATTGACGCTGCTAGTGGATGGGCACTTGTCAATATGACTCCTCAAAGGGCAAGAGA
260 ATGAAGATGATTGACGCTGCTAATGGAGGGGCACTTGTCAATATGACTCCTCAAAGGGCAAGAGA
*
9980611 ATTGATATCCACCATGGCGGCAAATTCTCAACAGTATCGACCAAATTCAAAACCCACAAGACGGG
325 ATTGATATCCACCATGGCGGCAAATTCTCAACAGTATCGACCAAATTCAAAACCCACAAGACGAG
9980676 TTAATGGGGTAAACGTTTCATCCTTAAAAGATAAATTAGATAGGCTTACTAATATTGTTCAATCT
390 TTAATGGGGTAAACGTTTCATCCTTAAAAGATAAATTAGATAGGCTTACTAATATTGTTCAATCT
*
9980741 TTGCTTACAGAAAAGAAGAATCTGACCCAACTGTGTGGAATTTGTACTACGTTTGAACATCCAAT
455 TTACTTACAGAAAAGAAGAATCTGACCCAACTGTGTGGAATTTGTACTACGTTTGAACATCCAAT
* *
9980806 GGATTTGTGCCCAATCCTTAACGACAATTCAATGGCACATGTTGATGCTGTTGGAGGTTTT-TCG
520 GGATTTGTGCCCAATCATTAACGACAATTCAATGGCACATGTTGATGCTGTTGGAGGTTTTCT-A
* *
9980870 GGACCTCCGCAAAGACGCTATGATCCTTTCTCCAACACTTATAATCCCGGGTGGAAGGATCATCC
584 GGACCTCCACAAAGACGCTATGATCCTTTCTCCAACACTTATAATCCCGAGTGGAAGGATCATCC
9980935 CAACTTGAAT
Statistics
Matches: 613, Mismatches: 33, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
651 2 0.00
652 611 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (652 bp):
AAGAGAATAGTTATTTTACTTACCCCTCGGTTCTATTACAACGTGAGATGACTTATCTTGTGTAT
TTCTTGACAAATTTTTCCCAACATCGCAAGCAGCTGAACTTAAAAGAGACATAGTGGGAATTTGC
CAAATGGAGAGTGAATCGCTCTATGACTATTGGGAGCGGTACAAAAATCTGTGTGCAAGTTGTCC
TCAACACAGTTTGACCGAACAATCACTTCTACAGTATTTCTACGAGGGTTTGCTCCCTATGAAAA
TGAAGATGATTGACGCTGCTAATGGAGGGGCACTTGTCAATATGACTCCTCAAAGGGCAAGAGAA
TTGATATCCACCATGGCGGCAAATTCTCAACAGTATCGACCAAATTCAAAACCCACAAGACGAGT
TAATGGGGTAAACGTTTCATCCTTAAAAGATAAATTAGATAGGCTTACTAATATTGTTCAATCTT
TACTTACAGAAAAGAAGAATCTGACCCAACTGTGTGGAATTTGTACTACGTTTGAACATCCAATG
GATTTGTGCCCAATCATTAACGACAATTCAATGGCACATGTTGATGCTGTTGGAGGTTTTCTAGG
ACCTCCACAAAGACGCTATGATCCTTTCTCCAACACTTATAATCCCGAGTGGAAGGATCATCCTT
AG
Found at i:9989743 original size:23 final size:23
Alignment explanation
Indices: 9989683--9989757 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
9989673 TCTACTCACT
9989683 AACAAATCAAGAACAATTTCCAG
1 AACAAATCAAGAACAATTTCCAG
*
9989706 CAGAC-TATCAA-AACAATTTCCAG
1 -A-ACAAATCAAGAACAATTTCCAG
*
9989729 AACAAATCAAGAACAATAT-CAG
1 AACAAATCAAGAACAATTTCCAG
9989751 AACAAAT
1 AACAAAT
9989758 GCAACAATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
21 2 0.04
22 16 0.36
23 19 0.42
24 6 0.13
25 2 0.04
ACGTcount: A:0.53, C:0.21, G:0.08, T:0.17
Consensus pattern (23 bp):
AACAAATCAAGAACAATTTCCAG
Found at i:9989879 original size:18 final size:18
Alignment explanation
Indices: 9989856--9989890 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
9989846 GTAAACTCTT
9989856 TCAAAAAACAACAGACTA
1 TCAAAAAACAACAGACTA
9989874 TCAAAAAACAACAGACT
1 TCAAAAAACAACAGACT
9989891 CTAAAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.23, G:0.06, T:0.11
Consensus pattern (18 bp):
TCAAAAAACAACAGACTA
Found at i:9993199 original size:21 final size:21
Alignment explanation
Indices: 9993173--9993216 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
9993163 CATTTTTCCT
9993173 ATATTCCCAAAGTATTGTAAA
1 ATATTCCCAAAGTATTGTAAA
9993194 ATATTCCCAAAGTATTGTAAA
1 ATATTCCCAAAGTATTGTAAA
9993215 AT
1 AT
9993217 CATCTGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (21 bp):
ATATTCCCAAAGTATTGTAAA
Found at i:10005445 original size:28 final size:28
Alignment explanation
Indices: 10005409--10005505 Score: 106
Period size: 28 Copynumber: 3.4 Consensus size: 28
10005399 ACAAAGTGCA
*
10005409 AATAACGATAAGCACTGAAGTGCAAAAT
1 AATAACGATAAGCACAGAAGTGCAAAAT
* *
10005437 AATAACGATAAGCACAAAAGTGCAAATTTT
1 AATAACGATAAGCACAGAAGTGCAAA--AT
* * * *
10005467 TACAACGATAAGCACCGAAGTGCGAAAT
1 AATAACGATAAGCACAGAAGTGCAAAAT
10005495 AAT-ACGATAAG
1 AATAACGATAAG
10005506 AGCGCTAATT
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
27 8 0.14
28 26 0.46
30 22 0.39
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (28 bp):
AATAACGATAAGCACAGAAGTGCAAAAT
Found at i:10023819 original size:22 final size:23
Alignment explanation
Indices: 10023777--10023819 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
10023767 AAGGTTATAA
*
10023777 TAAAATTTTATTATATTTTAATT
1 TAAAATTTTATTAAATTTTAATT
10023800 TAAAATTTTA-TAAATTTTAA
1 TAAAATTTTATTAAATTTTAA
10023820 AAATAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TAAAATTTTATTAAATTTTAATT
Found at i:10023826 original size:23 final size:23
Alignment explanation
Indices: 10023775--10023827 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
10023765 TGAAGGTTAT
*
10023775 AATAAAATTTTATTATATTTTAA
1 AATAAAATTTTATTAAATTTTAA
**
10023798 TTTAAAATTTTA-TAAATTTTAAA
1 AATAAAATTTTATTAAATTTT-AA
10023821 AATAAAA
1 AATAAAA
10023828 AGTTGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
AATAAAATTTTATTAAATTTTAA
Found at i:10029485 original size:19 final size:19
Alignment explanation
Indices: 10029424--10029490 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
10029414 TTGAAGGTGG
*
10029424 TTCTCTTTTC-TT-TTTCT
1 TTCTATTTTCTTTGTTTCT
* *
10029441 TTCTCTTTCTCTTCG-TTCT
1 TTCTATTT-TCTTTGTTTCT
10029460 TTACTATTTTCTTTGTTTCT
1 TT-CTATTTTCTTTGTTTCT
10029480 TTCTATTTTCT
1 TTCTATTTTCT
10029491 ATACGAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 8 0.19
18 2 0.05
19 21 0.50
20 11 0.26
ACGTcount: A:0.04, C:0.22, G:0.03, T:0.70
Consensus pattern (19 bp):
TTCTATTTTCTTTGTTTCT
Found at i:10033239 original size:113 final size:114
Alignment explanation
Indices: 10032988--10033282 Score: 321
Period size: 113 Copynumber: 2.6 Consensus size: 114
10032978 TTTTGGTTAT
* * ** *
10032988 GCGCCGCAAAATCTCA-AGACCAAAACGCATCGTTTTTGTATTGATGTATACAATAATTAGTGGC
1 GCGCCGCAAAATATCATA-ACCAAAACGCATCGTTTTGGTATTGATGTATATTAGAATTAGTGGC
* ** * * * **
10033052 GATTATGATAAAACGCCGCTAAAGCAAGTAATAGCGGCGCATTGTGGGAA
65 GCTTACAAAAAAACGCCGCTAAAACAAGTAATAGCGGCGCATTCTGAAAA
* * *
10033102 GCGCCGCAAAA-ATCTTAACGAAAACGCATCGTTTTGGTATCGATGTATATTAGAATTAGTGGCG
1 GCGCCGCAAAATATCATAACCAAAACGCATCGTTTTGGTATTGATGTATATTAGAATTAGTGGCG
* *
10033166 CTTACAAAAAAACGCCAG-TAAAACAAGTATTAGCGGCG-TTTACT-AAAA
66 CTTACAAAAAAACGCC-GCTAAAACAAGTAATAGCGGCGCATT-CTGAAAA
* ** * *
10033214 GCGCCGCAAAATATGATAACCAAAACGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTGGCG
1 GCGCCGCAAAATATCATAACCAAAACGCATCGTTTTGGTATTGATGTATATTAGAATTAGTGGCG
10033279 CTTA
66 CTTA
10033283 ATAGAAGTGC
Statistics
Matches: 151, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
112 15 0.10
113 123 0.81
114 13 0.09
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (114 bp):
GCGCCGCAAAATATCATAACCAAAACGCATCGTTTTGGTATTGATGTATATTAGAATTAGTGGCG
CTTACAAAAAAACGCCGCTAAAACAAGTAATAGCGGCGCATTCTGAAAA
Found at i:10033370 original size:75 final size:75
Alignment explanation
Indices: 10033194--10033350 Score: 183
Period size: 75 Copynumber: 2.1 Consensus size: 75
10033184 TAAAACAAGT
* * * * *
10033194 ATTAGCGGCGTTTACTAAAAGCGCCGCAAAATATGATAACCAAAACGCAGAGTTTTGATCTTGAT
1 ATTAGTGGCGCTTAATAAAAGCGCCGCAAAATATGATAACCAAAACGCAGAGGTTTGATCTCGAT
* *
10033259 GTATATTAGA
66 GTATAATACA
* * * *
10033269 ATTAGTGGCGCTTAATAGAAGTGCCGCAAAA-AGTGTTAACCAAAACGCA-ACGGTTTGGTCTCG
1 ATTAGTGGCGCTTAATAAAAGCGCCGCAAAATA-TGATAACCAAAACGCAGA-GGTTTGATCTCG
10033332 ATGTATAATACA
64 ATGTATAATACA
10033344 ATTAGTG
1 ATTAGTG
10033351 TCGTTAGTTA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
74 2 0.03
75 67 0.97
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (75 bp):
ATTAGTGGCGCTTAATAAAAGCGCCGCAAAATATGATAACCAAAACGCAGAGGTTTGATCTCGAT
GTATAATACA
Found at i:10033453 original size:188 final size:187
Alignment explanation
Indices: 10033099--10033470 Score: 448
Period size: 188 Copynumber: 2.0 Consensus size: 187
10033089 CGCATTGTGG
* * * * *
10033099 GAAGCGCCGCAAAAATCTTAACGAAAACGCATCGTTTTGGTATCGATGTATATTAGAATTAGTGG
1 GAAGCGCCGCAAAAATCTTAACCAAAACGCAACGGTTTGGTATCGATGTATAATACAATTAGTGG
*
10033164 CGCTTACAAAAAAACGCCAGTAAAACAAGTATTAGCGGCGTTTACTAAAAGCGCCGCAAAATATG
66 CGCTTACAAAAAAACGCCAGTAAAACAAGAATTAGCGGCGTTTACTAAAAGCGCCGCAAAATATG
*
10033229 ATAACCAAAACGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTGGCGCTTAATA
131 ATAACCAAAACGCAGAGTTTTGATCTTGAGGTATATTAGAATTAGTGGCGCTTAATA
* * *
10033286 GAAGTGCCGCAAAAAGTGTTAACCAAAACGCAACGGTTTGGTCTCGATGTATAATACAATTAGTG
1 GAAGCGCCGCAAAAA-TCTTAACCAAAACGCAACGGTTTGGTATCGATGTATAATACAATTAGTG
* *** * ** * * *
10033351 TCG-TTAGTTAAAAACGCC-GCTAAAGTATAA-AATTAGCGGCGATTTTTTAGAATCGCCGCAAG
65 GCGCTTACAAAAAAACGCCAG-TAAA--ACAAGAATTAGCGGCG-TTTACTAAAAGCGCCGCAAA
* * *
10033413 ATATGCA-CACCAAAACGCAGAG-TTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTA
126 ATATG-ATAACCAAAACGCAGAGTTTTGATCTTGAGGTATATTAGAATTAGTGGCGCTTA
10033471 CGGAAAAACG
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
186 1 0.01
187 30 0.19
188 87 0.56
189 37 0.24
190 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27
Consensus pattern (187 bp):
GAAGCGCCGCAAAAATCTTAACCAAAACGCAACGGTTTGGTATCGATGTATAATACAATTAGTGG
CGCTTACAAAAAAACGCCAGTAAAACAAGAATTAGCGGCGTTTACTAAAAGCGCCGCAAAATATG
ATAACCAAAACGCAGAGTTTTGATCTTGAGGTATATTAGAATTAGTGGCGCTTAATA
Found at i:10033478 original size:114 final size:114
Alignment explanation
Indices: 10033307--10033760 Score: 419
Period size: 114 Copynumber: 4.0 Consensus size: 114
10033297 AAAAGTGTTA
* * * * * *
10033307 ACCAAAACGCA-ACGGTTTGGTCTCGATGTATAATACAATTAGTGTCG-TTA-GTTAAAAACGCC
1 ACCAAAACGCAGA--GTTTGGTCTTGAGGTATATTAAAATTAGTGGCGCTTACG-GAAAAACGCC
** * * *
10033369 GCTAAAGTATAAAATTAGCGGCGATTTTTTAGAATCGCCGCAAGATATGCAC
63 GCTAAAGTATACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAAGATATACAC
** *
10033421 ACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTACGGAAAAACGCCGTT
1 ACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAAAATTAGTGGCGCTTACGGAAAAACGCCGCT
* * ** * * *
10033486 AAAG-AGTACTATTAGCGGGGCGTTTGGAGAAGCGCCGCTATAT-TTCTTA-
66 AAAGTA-TACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAAGATATAC--AC
** * * * *
10033535 ACCAAAACTTA-ACGTTTTGGTCTTGATGTATAATATAATTAGTGGCGCTTAC-AATAAAACGCC
1 ACCAAAACGCAGA-G-TTTGGTCTTGAGGTATATTAAAATTAGTGGCGCTTACGGA-AAAACGCC
*
10033598 GCTAAA-TATCAGTATTAGCGGCGC--TTTTAGTTAAGCGCCGCAAGATATACAC
63 GCTAAAGTAT-ACTATTAGCGGCGCTTTTTTAG--AAGCGCCGCAAGATATACAC
* * *
10033650 ACCAAAACGCAGAGTTTGGTATTGAGGTATATTAAAATTAGTGGCGCTTATTGG-AAAACGCCAC
1 ACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAAAATTAGTGGCGCTTA-CGGAAAAACGCCGC
*
10033714 TAAAGTATACTATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATA
65 TAAAGTATACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAAGATATA
10033761 TTAACCGAAA
Statistics
Matches: 274, Mismatches: 45, Indels: 42
0.76 0.12 0.12
Matches are distributed among these distances:
113 35 0.13
114 144 0.53
115 87 0.32
116 8 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (114 bp):
ACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAAAATTAGTGGCGCTTACGGAAAAACGCCGCT
AAAGTATACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAAGATATACAC
Found at i:10033710 original size:229 final size:227
Alignment explanation
Indices: 10033304--10033732 Score: 580
Period size: 229 Copynumber: 1.9 Consensus size: 227
10033294 GCAAAAAGTG
* **
10033304 TTAACCAAAACGCAACGGTTTGGTCTCGATGTATAATACAATTAGTGTCGTTAGTTAAAAACGCC
1 TTAACCAAAACGCAACGGTTTGGTCTCGATGTATAATACAATTAGTGGCGTTAAATAAAAACGCC
* *
10033369 GCTAAAGTATAAAATTAGCGGCGATTTTTTAGAATCGCCGCAAGATATGCACACCAAAACGCAGA
66 GCTAAAGTATAAAATTAGCGGCGATTTTTTA-AAGCGCCGCAAGATATACACACCAAAACGCAGA
* ** **
10033434 GTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTACGGAAAAACGCCGTTAAAG-AGTACTAT
130 GTTTGGTATTGAGGTATATTAAAATTAGTGGCGCTTACGGAAAAACGCCACTAAAGTA-TACTAT
10033498 TAGCGGGGCGTTTGGAGAAGCGCCGCTATATTTC
194 TAGCGGGGCGTTTGGAGAAGCGCCGCTATATTTC
** * * *
10033532 TTAACCAAAACTTAACGTTTTGGTCTTGATGTATAATATAATTAGTGGCGCTTACAAT-AAAACG
1 TTAACCAAAACGCAACGGTTTGGTCTCGATGTATAATACAATTAGTGGCG-TTA-AATAAAAACG
** *
10033596 CCGCTAAA-TATCAGTATTAGCGGCGCTTTTAGTT-AAGCGCCGCAAGATATACACACCAAAACG
64 CCGCTAAAGTAT-AAAATTAGCGGCGATTTT--TTAAAGCGCCGCAAGATATACACACCAAAACG
*
10033659 CAGAGTTTGGTATTGAGGTATATTAAAATTAGTGGCGCTTATTGG-AAAACGCCACTAAAGTATA
126 CAGAGTTTGGTATTGAGGTATATTAAAATTAGTGGCGCTTA-CGGAAAAACGCCACTAAAGTATA
10033723 CTATTAGCGG
190 CTATTAGCGG
10033733 CGCTTTCTTA
Statistics
Matches: 175, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
228 47 0.27
229 122 0.70
230 4 0.02
231 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28
Consensus pattern (227 bp):
TTAACCAAAACGCAACGGTTTGGTCTCGATGTATAATACAATTAGTGGCGTTAAATAAAAACGCC
GCTAAAGTATAAAATTAGCGGCGATTTTTTAAAGCGCCGCAAGATATACACACCAAAACGCAGAG
TTTGGTATTGAGGTATATTAAAATTAGTGGCGCTTACGGAAAAACGCCACTAAAGTATACTATTA
GCGGGGCGTTTGGAGAAGCGCCGCTATATTTC
Found at i:10033790 original size:229 final size:227
Alignment explanation
Indices: 10033331--10033795 Score: 539
Period size: 229 Copynumber: 2.0 Consensus size: 227
10033321 GTTTGGTCTC
* **
10033331 GATGTATAATACAATTAGTGTCGTTAGTTAAAAACGCCGCTAAAGTATAAAATTAGCGGCGATTT
1 GATGTATAATACAATTAGTGGCGTTAAATAAAAACGCCGCTAAAGTATAAAATTAGCGGCGATTT
* * * **
10033396 TTTAGAATCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTA
66 TTTA-AAGCGCCGCAAGATATACACACCAAAACGCAGAGTTTGGTATTGAGGTATATTAAAATTA
** * *
10033461 GTGGCGCTTACGGAAAAACGCCGTTAAAGAGTACTATTAGCGGGGCGTTTGGAGAAGCGCCGCTA
130 GTGGCGCTTACGGAAAAACGCCACTAAAGAGTACTATTAGCGGCGCGTTTGGAGAAGCGCCGCAA
* * * * ***
10033526 TATTTCTTAACCAAAACTTAACGTTTTGGTCTT
195 GATATATTAACCAAAACCTAACGTTTAAATCTT
* ** *
10033559 GATGTATAATATAATTAGTGGCGCTTACAAT-AAAACGCCGCTAAA-TATCAGTATTAGCGGCGC
1 GATGTATAATACAATTAGTGGCG-TTA-AATAAAAACGCCGCTAAAGTAT-AAAATTAGCGGCGA
10033622 TTTTAGTT-AAGCGCCGCAAGATATACACACCAAAACGCAGAGTTTGGTATTGAGGTATATTAAA
63 TTTT--TTAAAGCGCCGCAAGATATACACACCAAAACGCAGAGTTTGGTATTGAGGTATATTAAA
* **
10033686 ATTAGTGGCGCTTATTGG-AAAACGCCACTAAAGTA-TACTATTAGCGGCGC-TTTCTTAGAAGC
126 ATTAGTGGCGCTTA-CGGAAAAACGCCACTAAAG-AGTACTATTAGCGGCGCGTTT-GGAGAAGC
* *
10033748 GCCGCAAGATATATTAACCGAAACGCT-GCGTTTAAATCTT
188 GCCGCAAGATATATTAACCAAAAC-CTAACGTTTAAATCTT
10033788 GATGTATA
1 GATGTATA
10033796 CTGGAATNNN
Statistics
Matches: 200, Mismatches: 28, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
228 27 0.14
229 166 0.83
230 5 0.03
231 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (227 bp):
GATGTATAATACAATTAGTGGCGTTAAATAAAAACGCCGCTAAAGTATAAAATTAGCGGCGATTT
TTTAAAGCGCCGCAAGATATACACACCAAAACGCAGAGTTTGGTATTGAGGTATATTAAAATTAG
TGGCGCTTACGGAAAAACGCCACTAAAGAGTACTATTAGCGGCGCGTTTGGAGAAGCGCCGCAAG
ATATATTAACCAAAACCTAACGTTTAAATCTT
Found at i:10044029 original size:21 final size:21
Alignment explanation
Indices: 10044015--10044071 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
10044005 GCAGATGTGG
*
10044015 CAGCGAGGGAAGCAGATGCTA
1 CAGCGAGAGAAGCAGATGCTA
* *
10044036 CAGCGAGAGAAGCAGAGGCCA
1 CAGCGAGAGAAGCAGATGCTA
10044057 CAGCGAGAGAAGCAG
1 CAGCGAGAGAAGCAG
10044072 CGAGAGAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.37, C:0.21, G:0.39, T:0.04
Consensus pattern (21 bp):
CAGCGAGAGAAGCAGATGCTA
Found at i:10044074 original size:12 final size:12
Alignment explanation
Indices: 10044057--10044095 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
10044047 GCAGAGGCCA
10044057 CAGCGAGAGAAG
1 CAGCGAGAGAAG
10044069 CAGCGAGAGAAG
1 CAGCGAGAGAAG
* *
10044081 TAGCGATAGAAG
1 CAGCGAGAGAAG
10044093 CAG
1 CAG
10044096 AGGTTCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.41, C:0.15, G:0.38, T:0.05
Consensus pattern (12 bp):
CAGCGAGAGAAG
Found at i:10044624 original size:43 final size:42
Alignment explanation
Indices: 10044523--10044663 Score: 144
Period size: 42 Copynumber: 3.3 Consensus size: 42
10044513 TTTGTGAAAT
* * * *
10044523 AAGCGCCGCTAAATAACACTACTATTAGCGGCGTTTTTGAAC
1 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTTCAAC
* *
10044565 AAGCGCCGCTATAGAACATTACTTTTAGCGGCGTTTTCTC-CC
1 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTT-TCAAC
* *
10044607 AAAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCGTTTTTTC-AT
1 -AAGCGCCGCTAAAGAACATTACT-TTTAGCGGCG-TTTTTCAAC
*
10044650 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
10044664 TTAGCGACGT
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
42 48 0.57
43 32 0.38
44 4 0.05
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTTCAAC
Found at i:10044810 original size:16 final size:16
Alignment explanation
Indices: 10044775--10044817 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
10044765 TGGTGTAGTG
* **
10044775 TCTATTCTATTACAGT
1 TCTATTCCATTACAAC
10044791 TCTATTCCATTACAAC
1 TCTATTCCATTACAAC
10044807 TCTATTCCATT
1 TCTATTCCATT
10044818 CCTCCAACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.02, T:0.47
Consensus pattern (16 bp):
TCTATTCCATTACAAC
Found at i:10049302 original size:13 final size:13
Alignment explanation
Indices: 10049284--10049314 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
10049274 GGCTCAACCC
10049284 ATATATATTAAAT
1 ATATATATTAAAT
*
10049297 ATATATATTTAAT
1 ATATATATTAAAT
10049310 ATATA
1 ATATA
10049315 ATTCGGGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATATATTAAAT
Found at i:10050490 original size:19 final size:19
Alignment explanation
Indices: 10050431--10050491 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
10050421 ATTTTCGAGG
* *
10050431 ATATACAATCTTA-AATAT
1 ATATGCAATCTTAGAAGAT
*
10050449 GATATGCATTCTTAGATATGAT
1 -ATATGCAATCTTAGA-A-GAT
10050471 ATATGCAATCTTAGAAGAT
1 ATATGCAATCTTAGAAGAT
10050490 AT
1 AT
10050492 GATTTTGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 16 0.46
20 2 0.06
21 15 0.43
22 2 0.06
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (19 bp):
ATATGCAATCTTAGAAGAT
Found at i:10052247 original size:43 final size:42
Alignment explanation
Indices: 10052151--10052376 Score: 224
Period size: 43 Copynumber: 5.3 Consensus size: 42
10052141 AGGTTATGTT
* * *
10052151 TTTAGCGGCGTTTTTGTG-AGAAGCGCCGCTAAAGGT-TT-TTT
1 TTTAGCGGCG--TTTGTGAAAAAGCGCCGCTAAAGGTCTTGATC
** * *
10052192 TTTAGCGGCGTTTGTGATAAAAGCGTAGCTAAAGTTCATGATC
1 TTTAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCTTGATC
* * * *
10052235 TTTAGCGACGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGTTC
1 TTTAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCTTGATC
* * *
10052278 TTTAGCGGCGTTTGTAAAAAAAGTGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCTTGATC
* *
10052321 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTATTGGTC
1 TTTAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCTTGATC
*
10052364 TTTAGCGGTGTTT
1 TTTAGCGGCGTTT
10052377 TTTTCTAAAA
Statistics
Matches: 153, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
39 6 0.04
41 24 0.16
42 1 0.01
43 121 0.79
44 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCTTGATC
Found at i:10052309 original size:86 final size:85
Alignment explanation
Indices: 10052138--10052376 Score: 275
Period size: 86 Copynumber: 2.8 Consensus size: 85
10052128 TATAATTTTT
* * * * * *
10052138 TAAAGGTTATG-TTTTTAGCGGCGTTTTTGTGAGAAGCGCCGCTAAAGGTTT-TTTTTTAGCGGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTTTGTTCTTTAGCGGC
* * *
10052201 GTTTGTGATAAAAGCGTAGC
66 GTTTGTAAAAAAAGCGCAGC
* * *
10052221 TAAAGTTCATGATCTTTAGCGACGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGTTCTTTAGCGG
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGT-TTGTTCTTTAGCGG
* *
10052286 CGTTTGTAAAAAAAGTGCCGC
65 CGTTTGTAAAAAAAGCGCAGC
* * * *
10052307 TAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTATTGGTCTTTAGCGG
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGT-TTGTTCTTTAGCGG
*
10052372 TGTTT
65 CGTTT
10052377 TTTTCTAAAA
Statistics
Matches: 130, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
83 9 0.07
84 32 0.25
85 2 0.02
86 87 0.67
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (85 bp):
TAAAGGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTTTGTTCTTTAGCGGC
GTTTGTAAAAAAAGCGCAGC
Found at i:10052481 original size:31 final size:31
Alignment explanation
Indices: 10052445--10052512 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
10052435 CTTATCAAAA
10052445 CGCCGCAAATACTTTTAGCGGCGCTTTTTTG
1 CGCCGCAAATACTTTTAGCGGCGCTTTTTTG
10052476 CGCCGCAAATACTTTTAGCGGCGCTTTTTTG
1 CGCCGCAAATACTTTTAGCGGCGCTTTTTTG
10052507 CGCCGC
1 CGCCGC
10052513 TAAAGGCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.15, C:0.29, G:0.24, T:0.32
Consensus pattern (31 bp):
CGCCGCAAATACTTTTAGCGGCGCTTTTTTG
Found at i:10061045 original size:31 final size:30
Alignment explanation
Indices: 10061010--10061069 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
10061000 GGAGGTGGGA
*
10061010 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
10061041 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
10061070 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:10061381 original size:9 final size:9
Alignment explanation
Indices: 10061364--10061412 Score: 80
Period size: 9 Copynumber: 5.4 Consensus size: 9
10061354 TTGAGTTGAT
10061364 TCGAATAAC
1 TCGAATAAC
*
10061373 TCGATTAAC
1 TCGAATAAC
10061382 TCGAATAAC
1 TCGAATAAC
*
10061391 TCGATTAAC
1 TCGAATAAC
10061400 TCGAATAAC
1 TCGAATAAC
10061409 TCGA
1 TCGA
10061413 TTCGTTTAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (9 bp):
TCGAATAAC
Found at i:10061427 original size:23 final size:18
Alignment explanation
Indices: 10061364--10061414 Score: 102
Period size: 18 Copynumber: 2.8 Consensus size: 18
10061354 TTGAGTTGAT
10061364 TCGAATAACTCGATTAAC
1 TCGAATAACTCGATTAAC
10061382 TCGAATAACTCGATTAAC
1 TCGAATAACTCGATTAAC
10061400 TCGAATAACTCGATT
1 TCGAATAACTCGATT
10061415 CGTTTAACTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (18 bp):
TCGAATAACTCGATTAAC
Found at i:10068025 original size:28 final size:26
Alignment explanation
Indices: 10067976--10068027 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
10067966 AACAATCAAA
* *
10067976 ACACATTTATATATCAAGATTACTAC
1 ACACATATATATATCAAAATTACTAC
10068002 ACACATATATCATGATCAAAATTACT
1 ACACATATAT-AT-ATCAAAATTACT
10068028 TAAACATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 9 0.41
27 2 0.09
28 11 0.50
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.33
Consensus pattern (26 bp):
ACACATATATATATCAAAATTACTAC
Found at i:10068313 original size:90 final size:90
Alignment explanation
Indices: 10068160--10068337 Score: 338
Period size: 90 Copynumber: 2.0 Consensus size: 90
10068150 TTAAAATACT
*
10068160 GAAATAGAGATCGATAGTGTGACGAACTTCTTTGACGATCCTTGAGCTTGTAACTAGCTTCCAAA
1 GAAATAGAGATCGATAGTGTGACGAACTTCCTTGACGATCCTTGAGCTTGTAACTAGCTTCCAAA
*
10068225 ATCTATAAAACAACGAGTGAACACC
66 ATCTATAAAACAACGAGCGAACACC
10068250 GAAATAGAGATCGATAGTGTGACGAACTTCCTTGACGATCCTTGAGCTTGTAACTAGCTTCCAAA
1 GAAATAGAGATCGATAGTGTGACGAACTTCCTTGACGATCCTTGAGCTTGTAACTAGCTTCCAAA
10068315 ATCTATAAAACAACGAGCGAACA
66 ATCTATAAAACAACGAGCGAACA
10068338 AACACACAGT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 86 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (90 bp):
GAAATAGAGATCGATAGTGTGACGAACTTCCTTGACGATCCTTGAGCTTGTAACTAGCTTCCAAA
ATCTATAAAACAACGAGCGAACACC
Found at i:10068795 original size:44 final size:44
Alignment explanation
Indices: 10068643--10068802 Score: 170
Period size: 43 Copynumber: 3.7 Consensus size: 44
10068633 GATTCGTACA
* * *
10068643 ATGCCAGCATCCCAGACGTGGTCTTACATGT-AATT-AAATAACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATTCAAAT-ACG
* * *
10068686 ATGCC-ACTGTCCCAAACAG-GGTCTTACACGTAAA-TCATATACA
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAATTCAAATACG
* *
10068729 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAT-TCAAATACG
10068773 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
10068803 ATATCGCATA
Statistics
Matches: 96, Mismatches: 13, Indels: 15
0.77 0.10 0.12
Matches are distributed among these distances:
42 1 0.01
43 54 0.56
44 36 0.38
45 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATTCAAATACG
Found at i:10076600 original size:43 final size:41
Alignment explanation
Indices: 10076535--10076692 Score: 129
Period size: 43 Copynumber: 3.7 Consensus size: 41
10076525 AGCTCGTACG
* * * *
10076535 ATGCCAGTGTCCCAGACGTGGTCTTACATGTAATCAAATAACA
1 ATGCCAATGTCCCAAACATGGTCTTACAT-AAATCAAAT-ACA
* * * *
10076578 ATGCCACTATCCCAAACATGGTCTTAAACATAAATCATATACG
1 ATGCCAATGTCCCAAACATGGTCTT--ACATAAATCAAATACA
* *
10076621 ATGCCAATGTCCCAAACATGGTCTTACACGCAAATCTCAAAT-CG
1 ATGCCAATGTCCCAAACATGGTCTTACA--TAAA--TCAAATACA
* *
10076665 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAAACATGGTCTTACA
10076693 CGATATCGCA
Statistics
Matches: 96, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 3 0.03
43 49 0.51
44 35 0.36
45 9 0.09
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (41 bp):
ATGCCAATGTCCCAAACATGGTCTTACATAAATCAAATACA
Found at i:10077790 original size:13 final size:13
Alignment explanation
Indices: 10077772--10077796 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10077762 ACAAACTATA
10077772 AAATTTTCACACG
1 AAATTTTCACACG
10077785 AAATTTTCACAC
1 AAATTTTCACAC
10077797 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:10077985 original size:22 final size:22
Alignment explanation
Indices: 10077957--10078000 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
10077947 ATGAGGAAGA
10077957 AAGGAAACAAAAAAAATCTAAT
1 AAGGAAACAAAAAAAATCTAAT
10077979 AAGGAAACAAAAAAAATCTAAT
1 AAGGAAACAAAAAAAATCTAAT
10078001 CTAAAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.68, C:0.09, G:0.09, T:0.14
Consensus pattern (22 bp):
AAGGAAACAAAAAAAATCTAAT
Found at i:10078019 original size:27 final size:27
Alignment explanation
Indices: 10077971--10078061 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 27
10077961 AAACAAAAAA
* * * *
10077971 AATCTAATAAGGAAACAAAAAAAATCT
1 AATCTAAAAAGAAAAGAAAAAAAACCT
*
10077998 AATCTAAAAAGAAAAG--AGAAAACCT
1 AATCTAAAAAGAAAAGAAAAAAAACCT
*
10078023 AATATAAAAATGAAAAGAAAAGAAAACCT
1 AATCTAAAAA-GAAAAGAAAA-AAAACCT
*
10078052 AATCTTAAAA
1 AATCTAAAAA
10078062 CTATGGAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
25 16 0.31
26 6 0.12
27 13 0.25
28 1 0.02
29 15 0.29
ACGTcount: A:0.65, C:0.10, G:0.09, T:0.16
Consensus pattern (27 bp):
AATCTAAAAAGAAAAGAAAAAAAACCT
Found at i:10078025 original size:25 final size:27
Alignment explanation
Indices: 10077991--10078061 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 27
10077981 GGAAACAAAA
*
10077991 AAAATCTAATCTAAAAA-GAAAAG-AG
1 AAAACCTAATCTAAAAATGAAAAGAAG
*
10078016 AAAACCTAATATAAAAATGAAAAGAAAAG
1 AAAACCTAATCTAAAAATGAAAAG--AAG
*
10078045 AAAACCTAATCTTAAAA
1 AAAACCTAATCTAAAAA
10078062 CTATGGAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 15 0.39
26 6 0.16
29 17 0.45
ACGTcount: A:0.65, C:0.10, G:0.08, T:0.17
Consensus pattern (27 bp):
AAAACCTAATCTAAAAATGAAAAGAAG
Found at i:10080646 original size:101 final size:101
Alignment explanation
Indices: 10080472--10080756 Score: 401
Period size: 101 Copynumber: 2.8 Consensus size: 101
10080462 AGTTGCTAGG
* * *
10080472 TCACGTGTGTAGTACTATGTGAAGG-TACTACGTGTACCGAAATGATAGGTCGCACGTGTAGTAT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGATAGGTCGCAAGTGTAGTAC
*
10080536 TATGTGCAGGCTACTGTGCATACCGAATAGCTTCGA
66 TATGTGCAGGCTACTATGCATACCGAATAGCTTCGA
* *
10080572 TCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTACCGAAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGATAGGTCGCAAGTGTAGTAC
** * *
10080637 TATGTGCAGGCTACTATGTGTATCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCATACCGAATAGCTTCGA
* * * * * * *
10080673 TCACGTGTGTAGTACTATGTACAGGCTACTACATGTATCGAATTAAAATGGTCACAAGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGATA-GGTCGCAAGTGTAGTA
10080738 CTATGTGCAGGCTACTATG
65 CTATGTGCAGGCTACTATG
10080757 TGAAACCGGG
Statistics
Matches: 165, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
100 23 0.14
101 109 0.66
102 33 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGATAGGTCGCAAGTGTAGTAC
TATGTGCAGGCTACTATGCATACCGAATAGCTTCGA
Found at i:10080703 original size:51 final size:51
Alignment explanation
Indices: 10080472--10080758 Score: 226
Period size: 51 Copynumber: 5.7 Consensus size: 51
10080462 AGTTGCTAGG
* * * * * *
10080472 TCACGTGTGTAGTACTATGTGAAGG-TACTACGTGTACCGAA-ATG-ATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATA-GCATCGA
* * * * ** * *
10080521 TCGCACGTGTAGTATTATGTGCAGGCTACTGTGCATACCGAATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATAGCATCGA
* * * * * *
10080572 TCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTACCGAA-ATG-ATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATA-GCATCGA
* * *
10080622 TCGCATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATAGCATCGA
* * ** ** *
10080673 TCACGTGTGTAGTACTATGTACAGGCTACTACATGTATCGAATTAAAAT-GG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAA-TAGCATCGA
*
10080724 TCACAAGTGTAGTACTATGTGCAGGCTACTATGTG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTG
10080759 AAACCGGGTA
Statistics
Matches: 185, Mismatches: 46, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
49 20 0.11
50 53 0.29
51 109 0.59
52 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATAGCATCGA
Found at i:10086759 original size:43 final size:43
Alignment explanation
Indices: 10086700--10086946 Score: 259
Period size: 43 Copynumber: 5.8 Consensus size: 43
10086690 AGTGATACGG
*
10086700 GGAATCAACACATAGCAACCCCTTTCATAATCAAAGATATGGT
1 GGAATCAGCACATAGCAACCCCTTTCATAATCAAAGATATGGT
* * ** *
10086743 GGAATCAGCACTTAGCAACCACCTTT-ATATTCAGTGATA-CGT
1 GGAATCAGCACATAGCAACC-CCTTTCATAATCAAAGATATGGT
* * * *
10086785 GGAATCAGCACATAGTAGCCCCTTTCACAATCAAATATATGGT
1 GGAATCAGCACATAGCAACCCCTTTCATAATCAAAGATATGGT
* * ** *
10086828 GGAATCAGCACTTAGCAACCACCTTT-ATATTCAGCGATACGG-
1 GGAATCAGCACATAGCAACC-CCTTTCATAATCAAAGATATGGT
* *
10086870 GGAATCAGCACATAGCAACCCCTTTCACAATCAAATATATGGT
1 GGAATCAGCACATAGCAACCCCTTTCATAATCAAAGATATGGT
* * * *
10086913 GGAATCAGCACCTAGCAACCACTTTTAGAATCAA
1 GGAATCAGCACATAGCAACCCCTTTCATAATCAA
10086947 TAATTCGGGG
Statistics
Matches: 163, Mismatches: 35, Indels: 12
0.78 0.17 0.06
Matches are distributed among these distances:
41 10 0.06
42 56 0.34
43 87 0.53
44 10 0.06
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (43 bp):
GGAATCAGCACATAGCAACCCCTTTCATAATCAAAGATATGGT
Found at i:10086979 original size:85 final size:85
Alignment explanation
Indices: 10086656--10086965 Score: 460
Period size: 85 Copynumber: 3.7 Consensus size: 85
10086646 TGCGTTACTC
* * * *
10086656 GGTGGATTCAGCATTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAACACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACC
* *
10086720 CCTTTCATAATCAAAGATAT
66 CCTTTCACAATCAAATATAT
* * *
10086740 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGTGGAATCAGCACATAGTAGCC
1 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACC
10086805 CCTTTCACAATCAAATATAT
66 CCTTTCACAATCAAATATAT
*
10086825 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGCGATACGGGGAATCAGCACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACC
10086890 CCTTTCACAATCAAATATAT
66 CCTTTCACAATCAAATATAT
* * * * * * *
10086910 GGTGGAATCAGCACCTAGCAACCACTTTTAGAATCAATAATTCGGGGAATCAGCAC
1 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCAC
10086966 TTAGTGACGC
Statistics
Matches: 204, Mismatches: 21, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
84 24 0.12
85 180 0.88
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (85 bp):
GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAATATAT
Found at i:10087349 original size:30 final size:30
Alignment explanation
Indices: 10087315--10087371 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
10087305 TCCTTAACTC
10087315 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
10087345 AAACTTTTGCATATTTACACTTTTGCC
1 AAACTTTGGCAAAATTACAATTTTGCC
10087372 ACAAAGCTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:10095050 original size:526 final size:524
Alignment explanation
Indices: 10094021--10095061 Score: 1655
Period size: 526 Copynumber: 2.0 Consensus size: 524
10094011 AGGATCTATT
*
10094021 GCCCTTAGTGTAGTATTATCGTCTATATGTACTTGTATTTTTTTTGAAAAAATTGGTTTATTAAA
1 GCCCTTAGTGTAGTATTATCGTCTATATGTACTTGTATTTTTTTTGAAAAAATTGGTTTAATAAA
* * *
10094086 ATATCCATTAGTTTCATTAAATCTTCGTATATTGTCCTCAAAGGTTTTTGCACGCAAAGTAAAGT
66 ATATCCATTAGTTTCATTAAATCTCCGTATATTGTCCTCAAAGGTTTTTGCACGAAAAGTAAAAT
*
10094151 GAAAGCAAATACTAGCTCACTGTGTATCTAACGTTTAACTAATATTAAGTGGTATTATGTGGTCG
131 GAAAGCAAATACTAGCTCACTGTGTATCTAACATTTAACTAATATTAAGTGGTATTATGTGGTCG
* * *
10094216 AATTGTAAGATAGAAAGACAACTTATATTAGTAGTTAATATAAACACGTCCTTAGTCTAATCAAA
196 AATTGTAAGATAAAAAGACAACTTATATTAGTAGTTAATATAAACACATCCTTAGTCAAATCAAA
*
10094281 ATTGAACAAATCAAGTAAAAGACTAATATGATGTCTATCAAGTCTAATTGGGGAGATACATTGTC
261 ATTGAACAAATCAAGTAAAAGACTAATAT-ATGTCTATCAAGTCAAATTGGGGAGATACATTGTC
*
10094346 ATGGGTATCGAAGCGAATGACTCCTAAAAGATAGAGACATACATGTGACTGACTAGACTTATAGT
325 ATGGGTATCGAAGCGAATGACTCCTAAAAGATAGAGACATACATGTGACTGACGAGACTTATAGT
* *
10094411 ACATCAAACATAACCAAAGTAAAATAGATCCTAAATCTGATTATGGATTTATTCACTTGTGACGA
390 ACATCAAACATAACCAAAGTAAAATAGATCCTAAATCTGATTATGCATTTATTCACTTGTGACAA
* * *
10094476 TCATAATGTGACATACCTTAATCTTGAGTGGATGATGGACTATGTATTCGTGACTCATATGTAAT
455 TCATAATGTGACATACATTAATCCTGAGTGGATGATGGACTATGTATTCATGACTCATATGTAAT
10094541 CTAAC
520 CTAAC
*
10094546 GCCCTTAGTGTAGTATTTAT-GTCTATATGTACTTGTATTTTTTTTCGAATAAATTGGTTTAATA
1 GCCCTTAGTGTAGTA-TTATCGTCTATATGTACTTGTATTTTTTTT-GAAAAAATTGGTTTAATA
* *
10094610 AAATATCCATTAGTTTCATTAATATCTCCGTATATTGTCCTCAAAGGTTTTTGCACTAAAATTAA
64 AAATATCCATTAGTTTCATTAA-ATCTCCGTATATTGTCCTCAAAGGTTTTTGCACGAAAAGTAA
* * *
10094675 AATGAAAGCAAATATTGGCTCACTGTGTATCTAACATTTAACTAATATTAAGTGGTATTGTGTGG
128 AATGAAAGCAAATACTAGCTCACTGTGTATCTAACATTTAACTAATATTAAGTGGTATTATGTGG
*
10094740 TCGAATTGTAATATAAAAAGGA-AACTTATATTAGTAGTTAATCA-AAACACATCCTTAGTCAAA
193 TCGAATTGTAAGATAAAAA-GACAACTTATATTAGTAGTTAAT-ATAAACACATCCTTAGTCAAA
*
10094803 TCAAAATTGAGA-AAATCAATTAAAAGACTAATAT-TGTCTATCAAGTCCAAATTGGGGAGATAC
256 TCAAAATTGA-ACAAATCAAGTAAAAGACTAATATATGTCTATCAAGT-CAAATTGGGGAGATAC
* * *
10094866 ATTGTCATGGGTATC-AGAGCGAATGACT-CTCAGAAGATAGAGACATACATGTGACTGGCGGGA
319 ATTGTCATGGGTATCGA-AGCGAATGACTCCT-AAAAGATAGAGACATACATGTGACTGACGAGA
* * * * *
10094929 TTTATAGTACGTCGAACATGACCCAAGTAAAATAGATCCTAAATCTGATTATGCATTTATTCACT
382 CTTATAGTACATCAAACATAACCAAAGTAAAATAGATCCTAAATCTGATTATGCATTTATTCACT
*
10094994 TGTGACAATCATAGTGTGACATACATTAATCCTGAGTGGATGATGGACTATGTATTCATGACTCA
447 TGTGACAATCATAATGTGACATACATTAATCCTGAGTGGATGATGGACTATGTATTCATGACTCA
10095059 TAT
512 TAT
10095062 ACTTTTATGT
Statistics
Matches: 475, Mismatches: 32, Indels: 17
0.91 0.06 0.03
Matches are distributed among these distances:
525 55 0.12
526 233 0.49
527 183 0.39
528 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (524 bp):
GCCCTTAGTGTAGTATTATCGTCTATATGTACTTGTATTTTTTTTGAAAAAATTGGTTTAATAAA
ATATCCATTAGTTTCATTAAATCTCCGTATATTGTCCTCAAAGGTTTTTGCACGAAAAGTAAAAT
GAAAGCAAATACTAGCTCACTGTGTATCTAACATTTAACTAATATTAAGTGGTATTATGTGGTCG
AATTGTAAGATAAAAAGACAACTTATATTAGTAGTTAATATAAACACATCCTTAGTCAAATCAAA
ATTGAACAAATCAAGTAAAAGACTAATATATGTCTATCAAGTCAAATTGGGGAGATACATTGTCA
TGGGTATCGAAGCGAATGACTCCTAAAAGATAGAGACATACATGTGACTGACGAGACTTATAGTA
CATCAAACATAACCAAAGTAAAATAGATCCTAAATCTGATTATGCATTTATTCACTTGTGACAAT
CATAATGTGACATACATTAATCCTGAGTGGATGATGGACTATGTATTCATGACTCATATGTAATC
TAAC
Found at i:10099952 original size:96 final size:96
Alignment explanation
Indices: 10099788--10099979 Score: 303
Period size: 96 Copynumber: 2.0 Consensus size: 96
10099778 AAAATAGTGA
* *
10099788 AAATTTATTTTCAAGAAATAATGTTTAGTTTTCGATTAAAGAAAAAAATAACCTTTCTACTGAAA
1 AAATTTATTTTCAAGAAATAACGTATAGTTTTCGATTAAAGAAAAAAATAACCTTTCTACTGAAA
10099853 GAAAAATTAAAGTTTCCATTCTATGATTTGG
66 GAAAAATTAAAGTTTCCATTCTATGATTTGG
** * * *
10099884 AAATTTATTTTCTGGAAATAACGTATAGTTTTCGATTAAAGAAAAAATTAACTTTTCTTCTGAAA
1 AAATTTATTTTCAAGAAATAACGTATAGTTTTCGATTAAAGAAAAAAATAACCTTTCTACTGAAA
* *
10099949 GAAAGATTAAAGTTTTCATTCTATGATTTGG
66 GAAAAATTAAAGTTTCCATTCTATGATTTGG
10099980 TTCATGTTAC
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.39
Consensus pattern (96 bp):
AAATTTATTTTCAAGAAATAACGTATAGTTTTCGATTAAAGAAAAAAATAACCTTTCTACTGAAA
GAAAAATTAAAGTTTCCATTCTATGATTTGG
Found at i:10103490 original size:13 final size:13
Alignment explanation
Indices: 10103472--10103529 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
10103462 AGTTTAGTAT
10103472 TACTTTTGAAAAG
1 TACTTTTGAAAAG
**
10103485 TACTTTCAAAAAG
1 TACTTTTGAAAAG
*
10103498 TA-TTGTGGAAAAG
1 TACTT-TTGAAAAG
* *
10103511 TACTTTTCAGAAG
1 TACTTTTGAAAAG
10103524 TACTTT
1 TACTTT
10103530 AAAAAAGTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 2 0.06
13 32 0.89
14 2 0.06
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:10103595 original size:16 final size:16
Alignment explanation
Indices: 10103574--10103624 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
10103564 GGTTGGAGGG
10103574 AATGGAATAAGGTTGT
1 AATGGAATAAGGTTGT
*
10103590 AATGGAATAAAGTTGT
1 AATGGAATAAGGTTGT
*
10103606 AATGTAAT-AGAGTTGT
1 AATGGAATAAG-GTTGT
10103622 AAT
1 AAT
10103625 AAGTAATTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
15 1 0.03
16 30 0.97
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.33
Consensus pattern (16 bp):
AATGGAATAAGGTTGT
Found at i:10103698 original size:44 final size:45
Alignment explanation
Indices: 10103606--10103698 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 45
10103596 ATAAAGTTGT
* *
10103606 AATGTAATAGAGTTGTAATAAGTAATTCAGTTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATAAGTAATTCA-TTGTTTGGTTGAATGG
10103652 AATGGAATAGAGCTGTAAT-AGT-ATTC-TTGTGTCTGGTTGAATGG
1 AATGGAATAGAGCTGTAATAAGTAATTCATTGT-T-TGGTTGAATGG
10103696 AAT
1 AAT
10103699 AGATATTGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
42 4 0.09
43 1 0.02
44 18 0.42
45 3 0.07
46 17 0.40
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (45 bp):
AATGGAATAGAGCTGTAATAAGTAATTCATTGTTTGGTTGAATGG
Found at i:10110123 original size:3 final size:3
Alignment explanation
Indices: 10110081--10110110 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10110071 ATTGTTTGAT
10110081 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
10110111 CTTGCTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TCA
Found at i:10114959 original size:20 final size:20
Alignment explanation
Indices: 10114921--10114959 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10114911 GTCCATTTGG
*
10114921 CCAAAAGTGTTTATGAAAAA
1 CCAAAAGTGTTTATCAAAAA
10114941 CCAAAAGT-TTTAATCAAAA
1 CCAAAAGTGTTT-ATCAAAA
10114960 GTTGCTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (20 bp):
CCAAAAGTGTTTATCAAAAA
Found at i:10116634 original size:7 final size:7
Alignment explanation
Indices: 10116609--10116647 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
10116599 TTTTCTGAGT
*
10116609 GTTTATA
1 GTTTAAA
*
10116616 GTCTAAA
1 GTTTAAA
*
10116623 GTTTATA
1 GTTTAAA
10116630 GTTTAAA
1 GTTTAAA
10116637 GTTTAAA
1 GTTTAAA
10116644 GTTT
1 GTTT
10116648 GACTATAGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.49
Consensus pattern (7 bp):
GTTTAAA
Found at i:10116646 original size:14 final size:14
Alignment explanation
Indices: 10116609--10116647 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
10116599 TTTTCTGAGT
*
10116609 GTTTATAGTCTAAA
1 GTTTATAGTTTAAA
10116623 GTTTATAGTTTAAA
1 GTTTATAGTTTAAA
*
10116637 GTTTAAAGTTT
1 GTTTATAGTTT
10116648 GACTATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.49
Consensus pattern (14 bp):
GTTTATAGTTTAAA
Found at i:10117763 original size:22 final size:22
Alignment explanation
Indices: 10117721--10117764 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10117711 TACACATCAC
* *
10117721 TTTGTGGATAAACTACTAGTAA
1 TTTGTAGATAAACTACCAGTAA
*
10117743 TTTGTAGATAAACTTCCAGTAA
1 TTTGTAGATAAACTACCAGTAA
10117765 AAATTATGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (22 bp):
TTTGTAGATAAACTACCAGTAA
Found at i:10118894 original size:3 final size:3
Alignment explanation
Indices: 10118871--10118910 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
10118861 CAAGAATGAG
*
10118871 AGA AG- AGA AG- AGA AAA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
10118911 TGGAGAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:10126269 original size:19 final size:20
Alignment explanation
Indices: 10126218--10126268 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
10126208 AAAATTATAA
10126218 AAAAATTTCAAAATAATTT-T
1 AAAAATTTCAAAAT-ATTTAT
*
10126238 TAAAA-TTCAAAATATTTAT
1 AAAAATTTCAAAATATTTAT
10126257 AAAAATTTCAAA
1 AAAAATTTCAAA
10126269 TTTTATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.15
19 13 0.48
20 10 0.37
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAATTTCAAAATATTTAT
Found at i:10126294 original size:24 final size:24
Alignment explanation
Indices: 10126249--10126296 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
10126239 AAAATTCAAA
*
10126249 ATATTTATAAAAATTTCAAATTTT
1 ATATTTATAAAAAATTCAAATTTT
*
10126273 ATATTTTTAAAAAATT-ATAATTTT
1 ATATTTATAAAAAATTCA-AATTTT
10126297 TTTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
ATATTTATAAAAAATTCAAATTTT
Found at i:10132680 original size:27 final size:27
Alignment explanation
Indices: 10132622--10132680 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
10132612 ACCTATATCT
*
10132622 CTAATTTAAAAAAAAAACCTAAAATGC
1 CTAATTAAAAAAAAAAACCTAAAATGC
* *
10132649 C-AATTAAAAAAAAACAACGTATAA-GC
1 CTAATTAAAAAAAAA-AACCTAAAATGC
10132675 CTAATT
1 CTAATT
10132681 TTTCCAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.58, C:0.15, G:0.05, T:0.22
Consensus pattern (27 bp):
CTAATTAAAAAAAAAAACCTAAAATGC
Found at i:10133720 original size:39 final size:41
Alignment explanation
Indices: 10133656--10133761 Score: 108
Period size: 39 Copynumber: 2.6 Consensus size: 41
10133646 CACGTCAGCA
* * * * * * *
10133656 AATCACGCTTACGTGAACGCAATTTGTTGCCACAT-AAGT-
1 AATCGCGCTGACGTGGACGCGATTTGCTGACACATCAACTG
**
10133695 AATCGCGCTGACGTGGACGCGATTTGCTGACACATCCCCTG
1 AATCGCGCTGACGTGGACGCGATTTGCTGACACATCAACTG
10133736 ACATCGCGCTGACGTGGACGCGATTT
1 A-ATCGCGCTGACGTGGACGCGATTT
10133762 CGGGAAAAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
39 29 0.53
40 1 0.02
41 1 0.02
42 24 0.44
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (41 bp):
AATCGCGCTGACGTGGACGCGATTTGCTGACACATCAACTG
Found at i:10135104 original size:2 final size:2
Alignment explanation
Indices: 10135097--10135121 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10135087 TGATTTTGAA
10135097 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10135122 NNNNNNNNNN
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10142861 original size:99 final size:99
Alignment explanation
Indices: 10142736--10142933 Score: 378
Period size: 99 Copynumber: 2.0 Consensus size: 99
10142726 TCTTTAATTC
*
10142736 CATTAAAAATAGATTATTTTTATCTAATAAAATATGATTAATAGATTTTTTAGTGTGAAATTTAA
1 CATTAAAAAGAGATTATTTTTATCTAATAAAATATGATTAATAGATTTTTTAGTGTGAAATTTAA
10142801 ACAAATAATATTTTAATTAAGATCATTTTTATTT
66 ACAAATAATATTTTAATTAAGATCATTTTTATTT
*
10142835 CATTAACAAGAGATTATTTTTATCTAATAAAATATGATTAATAGATTTTTTAGTGTGAAATTTAA
1 CATTAAAAAGAGATTATTTTTATCTAATAAAATATGATTAATAGATTTTTTAGTGTGAAATTTAA
10142900 ACAAATAATATTTTAATTAAGATCATTTTTATTT
66 ACAAATAATATTTTAATTAAGATCATTTTTATTT
10142934 AATAATTTAT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 97 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.46
Consensus pattern (99 bp):
CATTAAAAAGAGATTATTTTTATCTAATAAAATATGATTAATAGATTTTTTAGTGTGAAATTTAA
ACAAATAATATTTTAATTAAGATCATTTTTATTT
Found at i:10172135 original size:157 final size:157
Alignment explanation
Indices: 10171849--10172152 Score: 482
Period size: 157 Copynumber: 1.9 Consensus size: 157
10171839 TTATAGTAGA
* * *
10171849 GTTTTCTTATATAAGGTATTATTTTCTTGATATATTAGTGAATAAAAATAAGTGAACGTGATGAG
1 GTTTTCTTATATAAGGTATTATGTTCTTGATATATTAGTGAAGAAAAATAAGTGAAAGTGATGAG
* * * *
10171914 AAATATTATAGAGAGAGGGAATAAGGGAGTTATACACCTAGTAATCAACATTTTGCACTAAAACA
66 AAATATTATAAAGAAAGGGAATAAGGGAGTTATAAACCTAGTAATCAACATCTTGCACTAAAACA
* *
10171979 GTTTTGGACAGCAGCAGTAGTCTAAAT
131 GTTTTGAACAACAGCAGTAGTCTAAAT
* ** *
10172006 GTTTTCTTATATAAGGTCTTATGTTCTTGATATATTAGTGAAGGGAAATAAGTGAAAGTGATGGG
1 GTTTTCTTATATAAGGTATTATGTTCTTGATATATTAGTGAAGAAAAATAAGTGAAAGTGATGAG
*
10172071 AAATATTATAAAGAAAGGGAATAAGGGAGTTATAAACTTAGTAATCAACATCTTGCACTAAAACA
66 AAATATTATAAAGAAAGGGAATAAGGGAGTTATAAACCTAGTAATCAACATCTTGCACTAAAACA
10172136 GTTTTGAACAACAGCAG
131 GTTTTGAACAACAGCAG
10172153 GAGGTTAATT
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
157 133 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (157 bp):
GTTTTCTTATATAAGGTATTATGTTCTTGATATATTAGTGAAGAAAAATAAGTGAAAGTGATGAG
AAATATTATAAAGAAAGGGAATAAGGGAGTTATAAACCTAGTAATCAACATCTTGCACTAAAACA
GTTTTGAACAACAGCAGTAGTCTAAAT
Found at i:10173370 original size:23 final size:23
Alignment explanation
Indices: 10173343--10173429 Score: 115
Period size: 23 Copynumber: 3.9 Consensus size: 23
10173333 CTTTGCCGAT
10173343 CAGGCACTTTATGTGTCGTACAC
1 CAGGCACTTTATGTGTCGTACAC
* *
10173366 CAGGCACTTTATGTGTTGCACAC
1 CAGGCACTTTATGTGTCGTACAC
*
10173389 CAGGCACTTTATGTGTCGT--AT
1 CAGGCACTTTATGTGTCGTACAC
* *
10173410 CAGGCACCTTGTGTGTCGTA
1 CAGGCACTTTATGTGTCGTA
10173430 TTTCAAGCAC
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
21 18 0.32
23 38 0.68
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (23 bp):
CAGGCACTTTATGTGTCGTACAC
Found at i:10173490 original size:23 final size:23
Alignment explanation
Indices: 10173400--10173499 Score: 132
Period size: 23 Copynumber: 4.4 Consensus size: 23
10173390 AGGCACTTTA
*
10173400 TGTGTCGTA--TCAGGCACCTTG
1 TGTGTCGTATTTCAGGCACCTCG
*
10173421 TGTGTCGTATTTCAAGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
** *
10173444 CATGTCATATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
10173467 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
*
10173490 TGTATCGTAT
1 TGTGTCGTAT
10173500 CAGGTACTTA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
21 9 0.13
23 58 0.87
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:10181590 original size:3 final size:3
Alignment explanation
Indices: 10181582--10181616 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
10181572 CATGATCAAG
10181582 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
10181617 TAATAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:10181621 original size:3 final size:3
Alignment explanation
Indices: 10181615--10181650 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
10181605 CAACAACAAC
10181615 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10181651 GAAAAGATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10182262 original size:23 final size:22
Alignment explanation
Indices: 10182234--10182277 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10182224 AATTAAATCC
10182234 CTAAGATTACAAAATCATATCTT
1 CTAAGATTAC-AAATCATATCTT
* *
10182257 CTAAGATTGCATATCATATCT
1 CTAAGATTACAAATCATATCT
10182278 AAGATTGCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (22 bp):
CTAAGATTACAAATCATATCTT
Found at i:10185747 original size:16 final size:16
Alignment explanation
Indices: 10185726--10185794 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
10185716 TTTGGTTCAC
10185726 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10185742 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10185758 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
10185775 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10185791 TGTA
1 TGTA
10185795 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:10185772 original size:33 final size:32
Alignment explanation
Indices: 10185726--10185794 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
10185716 TTTGGTTCAC
10185726 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
10185758 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
10185791 TGTA
1 TGTA
10185795 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:10185859 original size:44 final size:45
Alignment explanation
Indices: 10185775--10185865 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
10185765 GGATTAGAGG
* * *
10185775 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
10185820 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
10185864 TG
1 TG
10185866 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:10192186 original size:20 final size:20
Alignment explanation
Indices: 10192149--10192188 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
10192139 CGTAAAATGA
* * *
10192149 TTTCTGGAAAATGTTTTACT
1 TTTCTGCAAAACGATTTACT
10192169 TTTCTGCAAAACGATTTACT
1 TTTCTGCAAAACGATTTACT
10192189 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (20 bp):
TTTCTGCAAAACGATTTACT
Found at i:10194709 original size:23 final size:23
Alignment explanation
Indices: 10194683--10194727 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
10194673 AGTGCCACAC
10194683 TGAAATGTAGCCGAAGCTACCAT
1 TGAAATGTAGCCGAAGCTACCAT
10194706 TGAAATGTAGCCGAAGCTACCA
1 TGAAATGTAGCCGAAGCTACCA
10194728 CTGATCAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (23 bp):
TGAAATGTAGCCGAAGCTACCAT
Found at i:10215039 original size:26 final size:26
Alignment explanation
Indices: 10214990--10215042 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
10214980 TTTTCATAGT
10214990 TTTAGGGTTTTTCTTTTCATTTTTTAG
1 TTTAGGGTTTTTCTTTTCA-TTTTTAG
*
10215017 TTTAGGTTTTTCTCTTTTC-TTTTTAG
1 TTTAGGGTTTT-TCTTTTCATTTTTAG
10215043 AATAAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 7 0.29
27 10 0.42
28 7 0.29
ACGTcount: A:0.09, C:0.09, G:0.13, T:0.68
Consensus pattern (26 bp):
TTTAGGGTTTTTCTTTTCATTTTTAG
Found at i:10217744 original size:20 final size:20
Alignment explanation
Indices: 10217719--10217761 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10217709 AGTGAAATGA
*
10217719 AATCTTGTAATAGTATAACT
1 AATCTTGTAACAGTATAACT
* *
10217739 AATCTTGTTACAGTATAATT
1 AATCTTGTAACAGTATAACT
10217759 AAT
1 AAT
10217762 TTGATGTTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (20 bp):
AATCTTGTAACAGTATAACT
Found at i:10220872 original size:18 final size:19
Alignment explanation
Indices: 10220829--10220874 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
10220819 ATATCACTCT
10220829 TATTATTATCTAATAATAA
1 TATTATTATCTAATAATAA
10220848 TCAATTATATAT-TAATAA-AA
1 T--ATTAT-TATCTAATAATAA
10220868 TATTATT
1 TATTATT
10220875 TTAATGCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 1 0.04
18 5 0.21
19 1 0.04
20 3 0.12
21 11 0.46
22 3 0.12
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (19 bp):
TATTATTATCTAATAATAA
Found at i:10224235 original size:13 final size:13
Alignment explanation
Indices: 10224217--10224248 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
10224207 TGTGTTATAT
10224217 TTGTATTTACTCA
1 TTGTATTTACTCA
10224230 TTGTA-TTACTCA
1 TTGTATTTACTCA
10224242 -TGTATTT
1 TTGTATTT
10224249 TAGTTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.22
12 9 0.50
13 5 0.28
ACGTcount: A:0.22, C:0.12, G:0.09, T:0.56
Consensus pattern (13 bp):
TTGTATTTACTCA
Found at i:10229336 original size:27 final size:27
Alignment explanation
Indices: 10229297--10229381 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
10229287 TTTCTCGAAA
10229297 TTATACCAGGGGTAAAATCGTCAAAAATT
1 TTAT-CCA-GGGTAAAATCGTCAAAAATT
* *
10229326 TTATCCAGGGTAGAATCGTTAAAAATT
1 TTATCCAGGGTAAAATCGTCAAAAATT
* **
10229353 TTA-CCGAGGGTCAAATTATC-AAAATT
1 TTATCC-AGGGTAAAATCGTCAAAAATT
10229379 TTA
1 TTA
10229382 ATGGGAGTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 11 0.23
27 30 0.62
28 3 0.06
29 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (27 bp):
TTATCCAGGGTAAAATCGTCAAAAATT
Found at i:10248874 original size:20 final size:19
Alignment explanation
Indices: 10248840--10248919 Score: 60
Period size: 20 Copynumber: 4.2 Consensus size: 19
10248830 AGAATTAATT
10248840 AAAA-TATTAAGAAATTGCAA
1 AAAATTATTAA-AAATTG-AA
*
10248860 ATAATTATTAAAAA-TGTAA
1 AAAATTATTAAAAATTG-AA
* *
10248879 AAGAATTATTAAAAGTTGTA
1 AA-AATTATTAAAAATTGAA
*
10248899 AAAA-TATTAGAAATT-AA
1 AAAATTATTAAAAATTGAA
10248916 AAAA
1 AAAA
10248920 GTAAGTTTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
17 5 0.10
18 9 0.18
19 7 0.14
20 20 0.41
21 8 0.16
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.30
Consensus pattern (19 bp):
AAAATTATTAAAAATTGAA
Found at i:10248907 original size:21 final size:20
Alignment explanation
Indices: 10248858--10248907 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
10248848 AAGAAATTGC
10248858 AAATAATTATTAAAAATGTAA
1 AAAT-ATTATTAAAAATGTAA
*
10248879 AAGA-ATTATTAAAAGTTGTAA
1 AA-ATATTATTAAAA-ATGTAA
10248900 AAATATTA
1 AAATATTA
10248908 GAAATTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 11 0.44
21 13 0.52
22 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (20 bp):
AAATATTATTAAAAATGTAA
Found at i:10248952 original size:18 final size:18
Alignment explanation
Indices: 10248840--10248954 Score: 67
Period size: 18 Copynumber: 6.2 Consensus size: 18
10248830 AGAATTAATT
*
10248840 AAAATATTAAGAAATTGCAA
1 AAAATATTAA-AAA-TGTAA
*
10248860 ATAATTATTAAAAATGTAA
1 A-AAATATTAAAAATGTAA
*
10248879 AAGAATTATTAAAAGTTGT-A
1 AA-AA-TATTAAAA-ATGTAA
*
10248899 AAAATATTAGAAAT-T-A
1 AAAATATTAAAAATGTAA
* ***
10248915 AAAA-AGTAAGTTTGTGAA
1 AAAATATTAAAAATGT-AA
10248933 AAAATATTAAAAATGTAA
1 AAAATATTAAAAATGTAA
10248951 AAAA
1 AAAA
10248955 ACGATTTAAT
Statistics
Matches: 72, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
15 4 0.06
16 7 0.10
17 1 0.01
18 19 0.26
19 15 0.21
20 15 0.21
21 11 0.15
ACGTcount: A:0.59, C:0.01, G:0.10, T:0.30
Consensus pattern (18 bp):
AAAATATTAAAAATGTAA
Found at i:10253002 original size:59 final size:59
Alignment explanation
Indices: 10252910--10253026 Score: 234
Period size: 59 Copynumber: 2.0 Consensus size: 59
10252900 TCATCTCCAA
10252910 ACATTATAAGACACTAAAATCATGTAATAAACACCATCTAAGCTTAAAACAACCACATG
1 ACATTATAAGACACTAAAATCATGTAATAAACACCATCTAAGCTTAAAACAACCACATG
10252969 ACATTATAAGACACTAAAATCATGTAATAAACACCATCTAAGCTTAAAACAACCACAT
1 ACATTATAAGACACTAAAATCATGTAATAAACACCATCTAAGCTTAAAACAACCACAT
10253027 TCAAACACAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (59 bp):
ACATTATAAGACACTAAAATCATGTAATAAACACCATCTAAGCTTAAAACAACCACATG
Found at i:10255791 original size:13 final size:13
Alignment explanation
Indices: 10255773--10255815 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
10255763 TAGATTTTCC
10255773 CTAAATATTATTA
1 CTAAATATTATTA
10255786 CTAAATA--ATT-
1 CTAAATATTATTA
*
10255796 CTAAATATTATCA
1 CTAAATATTATTA
10255809 CTAAATA
1 CTAAATA
10255816 ATTCAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.27
11 3 0.12
12 2 0.08
13 14 0.54
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
CTAAATATTATTA
Found at i:10255803 original size:23 final size:23
Alignment explanation
Indices: 10255773--10255824 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
10255763 TAGATTTTCC
*
10255773 CTAAATATTATTACTAAATAATT
1 CTAAATATTATCACTAAATAATT
10255796 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
10255819 CAAAAT
1 CTAAAT
10255825 TAAAAGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:10257379 original size:25 final size:25
Alignment explanation
Indices: 10257332--10257379 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
10257322 CAAAATTAAT
**
10257332 AATAAAATAAGAGTTATACAATAAC
1 AATAAAATAAGAGCAATACAATAAC
* *
10257357 AATAAAATAATAGCAATATAATA
1 AATAAAATAAGAGCAATACAATA
10257380 GTGAAATAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (25 bp):
AATAAAATAAGAGCAATACAATAAC
Found at i:10257424 original size:14 final size:14
Alignment explanation
Indices: 10257405--10257434 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10257395 AATAGTGAAA
*
10257405 AACAACAAGACAAT
1 AACAACAAAACAAT
10257419 AACAACAAAACAAT
1 AACAACAAAACAAT
10257433 AA
1 AA
10257435 AAAACAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.20, G:0.03, T:0.07
Consensus pattern (14 bp):
AACAACAAAACAAT
Found at i:10257680 original size:9 final size:9
Alignment explanation
Indices: 10257663--10257699 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
10257653 TGAGTTTTCG
10257663 AATTCGAAT
1 AATTCGAAT
*
10257672 AACTCGAAT
1 AATTCGAAT
10257681 AATTCGAAT
1 AATTCGAAT
10257690 AATTCGAAT
1 AATTCGAAT
10257699 A
1 A
10257700 TAATATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:10257959 original size:30 final size:30
Alignment explanation
Indices: 10257906--10257964 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
10257896 AACCTTTTAT
* *
10257906 TTTTTCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCAAAACTTTTACTCCCTTCCCAC
*
10257935 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCC-AAAACTTTTACTCCCTTCCCA
10257965 TCCCACCTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.28
30 13 0.52
31 5 0.20
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.42
Consensus pattern (30 bp):
TTTTCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:10258081 original size:20 final size:20
Alignment explanation
Indices: 10258035--10258081 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
10258025 CAAAATTTTA
*
10258035 CTCCCCAAAACTTTTTATTT
1 CTCCCCTAAACTTTTTATTT
*
10258055 TTCCCCTAAAC-TTTTATTT
1 CTCCCCTAAACTTTTTATTT
10258074 CTCACCCT
1 CTC-CCCT
10258082 TTACTCTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.21, C:0.34, G:0.00, T:0.45
Consensus pattern (20 bp):
CTCCCCTAAACTTTTTATTT
Found at i:10260032 original size:2 final size:2
Alignment explanation
Indices: 10260025--10260055 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
10260015 CGTGGAAGAG
10260025 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10260056 CCGTGTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:10260739 original size:38 final size:38
Alignment explanation
Indices: 10260688--10260765 Score: 111
Period size: 38 Copynumber: 2.1 Consensus size: 38
10260678 AAATATATTC
*
10260688 TTGGTTTAATTTGTTGGATTAACCAATTTAACTAATTT
1 TTGGTTTAATTTGTAGGATTAACCAATTTAACTAATTT
* * * *
10260726 TTGGTTTAATTTGTAGGTTTAATCAATTTAATTATTTT
1 TTGGTTTAATTTGTAGGATTAACCAATTTAACTAATTT
10260764 TT
1 TT
10260766 ATTAAATATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.55
Consensus pattern (38 bp):
TTGGTTTAATTTGTAGGATTAACCAATTTAACTAATTT
Found at i:10268214 original size:33 final size:33
Alignment explanation
Indices: 10268144--10268215 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
10268134 GAGCACTTGT
* *
10268144 AGTTTCCTCACCTGAGGTTGCAGGAATGTTTGC
1 AGTTTCCTCACCCGAGGTTGCAGGAATGTCTGC
* *
10268177 AGTTTCCTCACCCGTGGTTGTAGGAATGGTCTG-
1 AGTTTCCTCACCCGAGGTTGCAGGAAT-GTCTGC
10268210 AGTTTC
1 AGTTTC
10268216 TGGACCCAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 30 0.88
34 4 0.12
ACGTcount: A:0.17, C:0.21, G:0.28, T:0.35
Consensus pattern (33 bp):
AGTTTCCTCACCCGAGGTTGCAGGAATGTCTGC
Found at i:10268463 original size:33 final size:33
Alignment explanation
Indices: 10268404--10268490 Score: 88
Period size: 33 Copynumber: 2.6 Consensus size: 33
10268394 GGATCAGTAG
* *
10268404 GAGTTTCTTCA-TCCAGGTTAGTGGGAATGA-TAT
1 GAGTTTCTTCACTCAAGGTT-GAGGGAAT-ACTAT
* *
10268437 GATTTTCTTCACTCGAGGTTGAGGGAATACTAT
1 GAGTTTCTTCACTCAAGGTTGAGGGAATACTAT
* *
10268470 GAGTTCCTTCACCCAAGGTTG
1 GAGTTTCTTCACTCAAGGTTG
10268491 CAGGAAGGGT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
32 1 0.02
33 37 0.82
34 7 0.16
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (33 bp):
GAGTTTCTTCACTCAAGGTTGAGGGAATACTAT
Found at i:10268833 original size:33 final size:33
Alignment explanation
Indices: 10268796--10268867 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
10268786 AGTAGCAGTT
* *
10268796 GTTTCCTCACCCAAGTTTGCAGGAATGGT-TGTA
1 GTTTCCTCACCCAAGGTTGCAGAAATGGTCTG-A
* *
10268829 GTTTCCTCACCCATGGTTGTAGAAATGGTCTGA
1 GTTTCCTCACCCAAGGTTGCAGAAATGGTCTGA
10268862 GTTTCC
1 GTTTCC
10268868 GGACCCGATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 32 0.94
34 2 0.06
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (33 bp):
GTTTCCTCACCCAAGGTTGCAGAAATGGTCTGA
Found at i:10273459 original size:174 final size:174
Alignment explanation
Indices: 10273169--10273483 Score: 397
Period size: 174 Copynumber: 1.8 Consensus size: 174
10273159 AAAACCCTGG
* * *
10273169 CTCCATTTACCTCATTCCGAGCCTTAGCTTCACCACCTGAAACTTCATACCTTGAACCCAAATCA
1 CTCCATTTACCTCATTCCGAGCCCTAGCTTCACCACCTGAAACCTCATACCTTGAACCCAAACCA
** * ** **
10273234 CTGGCTGCACCACCTTCACTATCTAAGGTACTCGGATTACCCTCCAAACCAACTTCA-TCGGACT
66 CTCACCGCACCACAGTCACTATCTAAGGTACTAAGATTACCCTCCAAACCAACTTCACT-GGACT
10273298 CATT-ATGACCACAAATTACATCATTAGAACAAGACCGAACCACAC
130 C-TTCATGACCACAAATTACATCATTAGAACAAGACCGAACCACAC
* *
10273343 CTCCATTTACCTCATTCTGAGCCCT-GCCTTCACCACCTGAAACCTCATTCCTTGAACCCAAACC
1 CTCCATTTACCTCATTCCGAGCCCTAG-CTTCACCACCTGAAACCTCATACCTTGAACCCAAACC
*** * *
10273407 A-TCCACCGCATGGCAGTCACTATCTAAGGTTCTTAAG-TTACCCTCCAAACCAACTTTACTGGA
65 ACT-CACCGCACCACAGTCACTATCTAAGGTAC-TAAGATTACCCTCCAAACCAACTTCACTGGA
10273470 CTCTTCATGACCAC
128 CTCTTCATGACCAC
10273484 GAACTGCTTC
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
173 4 0.03
174 112 0.94
175 3 0.03
ACGTcount: A:0.29, C:0.36, G:0.10, T:0.25
Consensus pattern (174 bp):
CTCCATTTACCTCATTCCGAGCCCTAGCTTCACCACCTGAAACCTCATACCTTGAACCCAAACCA
CTCACCGCACCACAGTCACTATCTAAGGTACTAAGATTACCCTCCAAACCAACTTCACTGGACTC
TTCATGACCACAAATTACATCATTAGAACAAGACCGAACCACAC
Found at i:10275884 original size:7 final size:7
Alignment explanation
Indices: 10275872--10275896 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10275862 ATTCTGGGAG
10275872 AAAAAGA
1 AAAAAGA
10275879 AAAAAGA
1 AAAAAGA
10275886 AAAAAGA
1 AAAAAGA
10275893 AAAA
1 AAAA
10275897 TAATTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:10277848 original size:6 final size:6
Alignment explanation
Indices: 10277839--10277871 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
10277829 AATCTATTCT
10277839 AAAAAG AAAAA- AGAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG AAA
10277872 GAAAATCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 1 0.04
6 23 0.92
7 1 0.04
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:10277860 original size:17 final size:16
Alignment explanation
Indices: 10277839--10277876 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 16
10277829 AATCTATTCT
10277839 AAAAAGAAAAAAGAAAAG
1 AAAAAG-AAAAAG-AAAG
10277857 AAAAAGAAAAAGAAAG
1 AAAAAGAAAAAGAAAG
10277873 AAAA
1 AAAA
10277877 TCCTTACCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 6 0.30
18 6 0.30
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAGAAAG
Found at i:10282270 original size:114 final size:114
Alignment explanation
Indices: 10282111--10282398 Score: 307
Period size: 114 Copynumber: 2.5 Consensus size: 114
10282101 CCCAATTCTT
* * * * * *
10282111 GTATCCATACAAATTTCGGCTTCAATGTTTTGAAAAAATGAAAAATAAATTCTAAGTATCGAT-A
1 GTATCAATACCAATTTCGACTTCGATGTTTTCAAAAAATGAAAAATAAATCCTAAGTATCGATAA
* * * * *
10282175 CATTCACTAAGGTATCGATACCAGGGA-C-TAAGAATCGATACCCATCGCTG
66 AATT-ACCAAAGTATCGATACCA--GACCATAAGAATCAATACCCATAGCTG
* * * * * *
10282225 TTATCGATACCAGTTTCGTCTTCGTTG-TTT-AAGGAAAATGAAAAATAAATCCTAAGTATTGAT
1 GTATCAATACCAATTTCGACTTCGATGTTTTCAA--AAAATGAAAAATAAATCCTAAGTATCGAT
* *
10282288 AAAATTACCAAAGTATCGATACCAGACCATAAGTATCAATACCCATAGTTG
64 AAAATTACCAAAGTATCGATACCAGACCATAAGAATCAATACCCATAGCTG
* *
10282339 GTATCAATACCAATTTCGACTTTGATGTTTTCAAAAAATGAAAAAGAAATCCTAAGTATC
1 GTATCAATACCAATTTCGACTTCGATGTTTTCAAAAAATGAAAAATAAATCCTAAGTATC
10282399 CCCGAGCACA
Statistics
Matches: 143, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
112 4 0.03
113 4 0.03
114 126 0.88
115 7 0.05
116 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (114 bp):
GTATCAATACCAATTTCGACTTCGATGTTTTCAAAAAATGAAAAATAAATCCTAAGTATCGATAA
AATTACCAAAGTATCGATACCAGACCATAAGAATCAATACCCATAGCTG
Found at i:10283353 original size:12 final size:12
Alignment explanation
Indices: 10283332--10283369 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
10283322 CTCTCATGCT
*
10283332 AGGAAACTTCAA
1 AGGAAGCTTCAA
10283344 AGGAAGCTTC-A
1 AGGAAGCTTCAA
10283355 AGGAAGCTTCAA
1 AGGAAGCTTCAA
10283367 AGG
1 AGG
10283370 GATTTCTAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 11 0.46
12 13 0.54
ACGTcount: A:0.42, C:0.16, G:0.26, T:0.16
Consensus pattern (12 bp):
AGGAAGCTTCAA
Found at i:10283359 original size:11 final size:11
Alignment explanation
Indices: 10283332--10283366 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
10283322 CTCTCATGCT
*
10283332 AGGAAACTTCAA
1 AGGAAGCTTC-A
10283344 AGGAAGCTTCA
1 AGGAAGCTTCA
10283355 AGGAAGCTTCA
1 AGGAAGCTTCA
10283366 A
1 A
10283367 AGGGATTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.59
12 9 0.41
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (11 bp):
AGGAAGCTTCA
Found at i:10286923 original size:18 final size:19
Alignment explanation
Indices: 10286892--10286930 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
10286882 TCAAAGTAAT
10286892 TTAATAAAACAAATATAAC
1 TTAATAAAACAAATATAAC
* *
10286911 TTAATTAAA-AAATATTAC
1 TTAATAAAACAAATATAAC
10286929 TT
1 TT
10286931 TGTCCTCGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (19 bp):
TTAATAAAACAAATATAAC
Found at i:10289463 original size:19 final size:20
Alignment explanation
Indices: 10289413--10289463 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 20
10289403 AAACTTTTTT
10289413 TTTCTTACTTTCCCCCTAAAAC
1 TTTC-TACTTT-CCCCTAAAAC
*
10289435 TTT-TAC-TTCCCCTCAAA-
1 TTTCTACTTTCCCCTAAAAC
10289452 TTTCTACTTTCC
1 TTTCTACTTTCC
10289464 TTGAACCCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 3 0.12
18 11 0.42
19 6 0.23
20 3 0.12
22 3 0.12
ACGTcount: A:0.20, C:0.35, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTCTACTTTCCCCTAAAAC
Found at i:10290540 original size:70 final size:67
Alignment explanation
Indices: 10290418--10290550 Score: 167
Period size: 70 Copynumber: 1.9 Consensus size: 67
10290408 ATAAACAAGA
* ** * * * * *
10290418 TAATGGTTTTGCCTTTTAACTTAATGAGTAAACATTTATTAAAACGATATAGTTTTTTCTTTTAA
1 TAATGGTTTTGACTTTTAACTTAAAAAGGAAACATTTATCAAAACGACATAGTGTTGTCTTTTAA
10290483 CT
66 CT
10290485 TAATGGTTTTGACTTTTAACTTTAGAAAAGGGAAACATTTATCAAAACGACATAGTGTTGTCTTT
1 TAATGGTTTTGACTTTTAAC-TTA-AAAA-GGAAACATTTATCAAAACGACATAGTGTTGTCTTT
10290550 T
63 T
10290551 CTTATTCGGA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
67 19 0.35
68 3 0.05
69 2 0.04
70 31 0.56
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.44
Consensus pattern (67 bp):
TAATGGTTTTGACTTTTAACTTAAAAAGGAAACATTTATCAAAACGACATAGTGTTGTCTTTTAA
CT
Found at i:10298986 original size:30 final size:28
Alignment explanation
Indices: 10298952--10299016 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
10298942 TCTGAAATAA
*
10298952 AAATCAATAATCAATTTTTGGTAACAACAG
1 AAATCAA-AAT-AAATTTTGGTAACAACAG
* *
10298982 AAATC-AAATAAATTTTGTTAACAATAG
1 AAATCAAAATAAATTTTGGTAACAACAG
10299009 AAATCAAA
1 AAATCAAA
10299017 GAAATTCTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 20 0.65
28 5 0.16
29 1 0.03
30 5 0.16
ACGTcount: A:0.52, C:0.11, G:0.08, T:0.29
Consensus pattern (28 bp):
AAATCAAAATAAATTTTGGTAACAACAG
Found at i:10299003 original size:27 final size:27
Alignment explanation
Indices: 10298967--10299027 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
10298957 AATAATCAAT
* *
10298967 TTTTGGTAACAACAGAAATCAAATAAA
1 TTTTGTTAACAACAGAAATCAAAGAAA
*
10298994 TTTTGTTAACAATAGAAATCAAAGAAA
1 TTTTGTTAACAACAGAAATCAAAGAAA
*
10299021 TTCTGTT
1 TTTTGTT
10299028 GAGCAATAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (27 bp):
TTTTGTTAACAACAGAAATCAAAGAAA
Found at i:10299145 original size:80 final size:80
Alignment explanation
Indices: 10299009--10299246 Score: 241
Period size: 80 Copynumber: 3.0 Consensus size: 80
10298999 TTAACAATAG
* * * * * * *
10299009 AAATCAAAGAAATTCTGTTGAGCAATAGGAA-AAGAATCCTGAAACAATATTATTCAATTGATTT
1 AAATCAAACAAATCCTATTAAGCAACAGGAATAA-AATCCTGAAACAAAATTGTTCAATTGATTT
10299073 CTGTTTGAAACAAAAA
65 CTGTTTGAAACAAAAA
** * *
10299089 AAATTGAACAAATCCTATTAAGCAACAGGAATAAAATCCTGAAACAAAATTGTTCAATTGTTTTT
1 AAATCAAACAAATCCTATTAAGCAACAGGAATAAAATCCTGAAACAAAATTGTTCAATTGATTTC
10299154 TGTTTGAAAC---AA
66 TGTTTGAAACAAAAA
* **** * * ** *
10299166 AAATCAAACAAATCCTGTTAAATGGCAAGAATAAAATCTTGAAACATGATTGTTCAATTTATTTT
1 AAATCAAACAAATCCTATTAAGCAACAGGAATAAAATCCTGAAACAAAATTGTTCAATTGA-TTT
10299231 CTGTTTGAAACAAAAA
65 CTGTTTGAAACAAAAA
10299247 TTAAACAAAT
Statistics
Matches: 128, Mismatches: 25, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
77 50 0.39
78 13 0.10
80 61 0.48
81 4 0.03
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (80 bp):
AAATCAAACAAATCCTATTAAGCAACAGGAATAAAATCCTGAAACAAAATTGTTCAATTGATTTC
TGTTTGAAACAAAAA
Found at i:10299260 original size:78 final size:78
Alignment explanation
Indices: 10299035--10299320 Score: 305
Period size: 78 Copynumber: 3.7 Consensus size: 78
10299025 GTTGAGCAAT
* * *
10299035 AGGAA-AAGAATCCTGAAACAAT-ATTATTCAATTG-ATTTCTGTTTGAAACAAAAAAAATTGAA
1 AGGAATAA-AATCCTGAAAC-ATGATTGTTCAATTGTATTTTTGTTTGAAAC---AAAAATTAAA
* ****
10299097 CAAATCCTATTAAGCAAC
61 CAAATCCTGTTAAATGGC
** *
10299115 AGGAATAAAATCCTGAAACAAAATTGTTCAATTGT-TTTTTGTTTGAAACAAAAATCAAACAAAT
1 AGGAATAAAATCCTGAAACATGATTGTTCAATTGTATTTTTGTTTGAAACAAAAATTAAACAAAT
10299179 CCTGTTAAATGGC
66 CCTGTTAAATGGC
* *
10299192 AAGAATAAAATCTTGAAACATGATTGTTCAATT-TATTTTCTGTTTGAAACAAAAATTAAACAAA
1 AGGAATAAAATCCTGAAACATGATTGTTCAATTGTATTTT-TGTTTGAAACAAAAATTAAACAAA
*
10299256 TCCTGTTAAAATGGT
65 TCCTGTT-AAATGGC
* * * *
10299271 AGGAAT-AAATCCTAAAATAGGATTGTTCAATTGAATTTTTGTTTGAAACA
1 AGGAATAAAATCCTGAAACATGATTGTTCAATTGTATTTTTGTTTGAAACA
10299321 TAATACAATC
Statistics
Matches: 177, Mismatches: 22, Indels: 16
0.82 0.10 0.07
Matches are distributed among these distances:
76 1 0.01
77 54 0.31
78 63 0.36
79 17 0.10
80 40 0.23
81 2 0.01
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.32
Consensus pattern (78 bp):
AGGAATAAAATCCTGAAACATGATTGTTCAATTGTATTTTTGTTTGAAACAAAAATTAAACAAAT
CCTGTTAAATGGC
Found at i:10302114 original size:121 final size:121
Alignment explanation
Indices: 10301900--10302149 Score: 464
Period size: 121 Copynumber: 2.1 Consensus size: 121
10301890 AGGAATTTTT
* *
10301900 GATGAAATTGTCATTTAGGGACTTATTTATAAAAGTAGTAAAATTCCATGGTAAAATTGTGAAAT
1 GATGAAATTGTCATTTAGGGACTCATTTATAAAAGTAGTAAAATTCCATGGTAAAATTATGAAAT
*
10301965 GTTGATTTGTATGGGTTAGTGTAGGTCCCTAGTGAATTTGGCTAGCATGAAATACG
66 GCTGATTTGTATGGGTTAGTGTAGGTCCCTAGTGAATTTGGCTAGCATGAAATACG
*
10302021 GATGAAATTGTCATTTAGGGGCTCATTTATAAAAGTAGTAAAATTCCATGGTAAAATTATGAAAT
1 GATGAAATTGTCATTTAGGGACTCATTTATAAAAGTAGTAAAATTCCATGGTAAAATTATGAAAT
10302086 GCTGATTTGTATGGGTTAGTGTAGGTCCCTAGTGAATTTGGCTAGCATGAAATACG
66 GCTGATTTGTATGGGTTAGTGTAGGTCCCTAGTGAATTTGGCTAGCATGAAATACG
10302142 GATGAAAT
1 GATGAAAT
10302150 ACGAGCTTAA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 125 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (121 bp):
GATGAAATTGTCATTTAGGGACTCATTTATAAAAGTAGTAAAATTCCATGGTAAAATTATGAAAT
GCTGATTTGTATGGGTTAGTGTAGGTCCCTAGTGAATTTGGCTAGCATGAAATACG
Found at i:10302184 original size:121 final size:120
Alignment explanation
Indices: 10301926--10302185 Score: 371
Period size: 121 Copynumber: 2.1 Consensus size: 120
10301916 AGGGACTTAT
* * *
10301926 TTATAAAAGTAGTAAAATTCCATGGTAAAATTGTGAAATGTTGATTTGTATGGGTTAGTGTAGGT
1 TTATAAAAGAAGTAAAATTCCATGGTAAAATTATGAAATGCTGATTTGTATGGGTTAGTGTAGGT
* * * * * *
10301991 CCCTAGTGAATTTGGCTAGCATGAAATACGGATGAAATTGTCATTTAGGGGCTCAT
66 CCCTAGTGAATTTGGCTAGCATGAAATACGGATGAAATCG-CACTTAAGGACTAAA
*
10302047 TTATAAAAGTAGTAAAATTCCATGGTAAAATTATGAAATGCTGATTTGTATGGGTTAGTGTAGGT
1 TTATAAAAGAAGTAAAATTCCATGGTAAAATTATGAAATGCTGATTTGTATGGGTTAGTGTAGGT
10302112 CCCTAGTGAATTTGGCTAGCATGAAATACGGATGAAATACG-AGCTTAAGGACTAAA
66 CCCTAGTGAATTTGGCTAGCATGAAATACGGATGAAAT-CGCA-CTTAAGGACTAAA
*
10302168 TTGT-AAAGAAGTTAAAAT
1 TTATAAAAGAAG-TAAAAT
10302186 ATTAGGCACA
Statistics
Matches: 126, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
120 7 0.06
121 118 0.94
122 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (120 bp):
TTATAAAAGAAGTAAAATTCCATGGTAAAATTATGAAATGCTGATTTGTATGGGTTAGTGTAGGT
CCCTAGTGAATTTGGCTAGCATGAAATACGGATGAAATCGCACTTAAGGACTAAA
Found at i:10314120 original size:42 final size:42
Alignment explanation
Indices: 10314052--10314142 Score: 137
Period size: 42 Copynumber: 2.2 Consensus size: 42
10314042 ATTTCATGTC
* *
10314052 CACACGGCCTGAGACACAGGCGTGTGACTCAGCTGTATGTGA
1 CACACGGCCTGAGACACAGGCATGTGACTCAGCCGTATGTGA
* * *
10314094 CACATGGCCTGAGACATAGGCATGTGACTCAGCCGTGTGTGA
1 CACACGGCCTGAGACACAGGCATGTGACTCAGCCGTATGTGA
10314136 CACACGG
1 CACACGG
10314143 TCATGCGACA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.24, C:0.26, G:0.31, T:0.19
Consensus pattern (42 bp):
CACACGGCCTGAGACACAGGCATGTGACTCAGCCGTATGTGA
Found at i:10318882 original size:35 final size:36
Alignment explanation
Indices: 10318843--10318910 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 36
10318833 TTATAGTTAC
* * *
10318843 TGTCATATGGTATGAA-AACATACTCACATATTTAT
1 TGTCACATGGCATGAATAACATACCCACATATTTAT
*
10318878 TGTCACATGGCATGAATAACATACCCATATATT
1 TGTCACATGGCATGAATAACATACCCACATATT
10318911 CTCTTTCACG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 14 0.50
36 14 0.50
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (36 bp):
TGTCACATGGCATGAATAACATACCCACATATTTAT
Found at i:10318910 original size:36 final size:35
Alignment explanation
Indices: 10318834--10318910 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
10318824 GTCAGCACAT
* * * *
10318834 TATAGTTACTGTCATATGGTATGAAAACATACTCA
1 TATATTTACTGTCACATGGCATGAAAACATACCCA
* *
10318869 CATATTTATTGTCACATGGCATGAATAACATACCCA
1 TATATTTACTGTCACATGGCATGAA-AACATACCCA
10318905 TATATT
1 TATATT
10318911 CTCTTTCACG
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 20 0.59
36 14 0.41
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (35 bp):
TATATTTACTGTCACATGGCATGAAAACATACCCA
Found at i:10322207 original size:5 final size:5
Alignment explanation
Indices: 10322197--10322229 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
10322187 ATATCAGATT
10322197 AAATA AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAA
10322230 ATATAAAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:10322322 original size:5 final size:5
Alignment explanation
Indices: 10322312--10322346 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
10322302 CAGCCCAAAT
10322312 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
10322347 ATATAAAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:10322401 original size:117 final size:117
Alignment explanation
Indices: 10322197--10322430 Score: 468
Period size: 117 Copynumber: 2.0 Consensus size: 117
10322187 ATATCAGATT
10322197 AAATAAAATAAAATAAAATAAAATAAAATAAAAATATAAAAGTCCAATAAATTAATGTCCAGATT
1 AAATAAAATAAAATAAAATAAAATAAAATAAAAATATAAAAGTCCAATAAATTAATGTCCAGATT
10322262 ACAAAACCCAATTAACCCAAGCCCAGACCTAAAGCTAAATCAGCCCAAATTA
66 ACAAAACCCAATTAACCCAAGCCCAGACCTAAAGCTAAATCAGCCCAAATTA
10322314 AAATAAAATAAAATAAAATAAAATAAAATAAAAATATAAAAGTCCAATAAATTAATGTCCAGATT
1 AAATAAAATAAAATAAAATAAAATAAAATAAAAATATAAAAGTCCAATAAATTAATGTCCAGATT
10322379 ACAAAACCCAATTAACCCAAGCCCAGACCTAAAGCTAAATCAGCCCAAATTA
66 ACAAAACCCAATTAACCCAAGCCCAGACCTAAAGCTAAATCAGCCCAAATTA
10322431 CTAAACCCTA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 117 1.00
ACGTcount: A:0.56, C:0.18, G:0.06, T:0.20
Consensus pattern (117 bp):
AAATAAAATAAAATAAAATAAAATAAAATAAAAATATAAAAGTCCAATAAATTAATGTCCAGATT
ACAAAACCCAATTAACCCAAGCCCAGACCTAAAGCTAAATCAGCCCAAATTA
Found at i:10322683 original size:10 final size:10
Alignment explanation
Indices: 10322668--10322692 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10322658 GAAATAATAG
10322668 AAAAAGGGAA
1 AAAAAGGGAA
10322678 AAAAAGGGAA
1 AAAAAGGGAA
10322688 AAAAA
1 AAAAA
10322693 CCATTTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (10 bp):
AAAAAGGGAA
Found at i:10323499 original size:9 final size:9
Alignment explanation
Indices: 10323481--10323530 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
10323471 TAATTCATTG
10323481 ATTA-ATTT
1 ATTATATTT
10323489 ATTATATTT
1 ATTATATTT
*
10323498 ATTATTTTT
1 ATTATATTT
*
10323507 ATTGACA-TT
1 ATT-ATATTT
10323516 ATTATATTT
1 ATTATATTT
10323525 GATTAT
1 -ATTAT
10323531 TTTTCCTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
8 6 0.18
9 22 0.65
10 6 0.18
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (9 bp):
ATTATATTT
Done.