Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 47 of 141
Found at i:14886865 original size:15 final size:14
Alignment explanation
Indices: 14886842--14886883 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
14886832 GTTTCTTCCG
*
14886842 TTTTCTCTTTTTCTT
1 TTTTTTCTTTTT-TT
14886857 TTTTTTCTTTTGTTT
1 TTTTTTCTTTT-TTT
14886872 TTTTTT-TTTTTT
1 TTTTTTCTTTTTT
14886884 GGGGGGGGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 2 0.08
14 4 0.16
15 18 0.72
16 1 0.04
ACGTcount: A:0.00, C:0.10, G:0.02, T:0.88
Consensus pattern (14 bp):
TTTTTTCTTTTTTT
Found at i:14886909 original size:1 final size:1
Alignment explanation
Indices: 14886905--14886944 Score: 71
Period size: 1 Copynumber: 40.0 Consensus size: 1
14886895 GTTAACAAGA
*
14886905 TTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14886945 GGGGGGGGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:14891883 original size:2 final size:2
Alignment explanation
Indices: 14891871--14891913 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
14891861 NNNNNNNCAC
* *
14891871 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14891913 A
1 A
14891914 GATTGTTGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:14903034 original size:2 final size:2
Alignment explanation
Indices: 14903027--14903054 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14903017 AGTAAAAAGA
14903027 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14903055 GAAATAGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14911673 original size:9 final size:9
Alignment explanation
Indices: 14911659--14911689 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14911649 GTTAAACGAA
14911659 TCGAGTTAT
1 TCGAGTTAT
*
14911668 TCGAGTTAA
1 TCGAGTTAT
14911677 TCGAGTTAT
1 TCGAGTTAT
14911686 TCGA
1 TCGA
14911690 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:14911760 original size:9 final size:9
Alignment explanation
Indices: 14911743--14911779 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14911733 TGAGTTTTCG
14911743 AATTCGAAT
1 AATTCGAAT
*
14911752 AACTCGAAT
1 AATTCGAAT
14911761 AATTCGAAT
1 AATTCGAAT
14911770 AATTCGAAT
1 AATTCGAAT
14911779 A
1 A
14911780 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14912665 original size:5 final size:5
Alignment explanation
Indices: 14912655--14912680 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14912645 CTCGAAAATT
14912655 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
14912681 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:14916093 original size:98 final size:98
Alignment explanation
Indices: 14915924--14916114 Score: 260
Period size: 98 Copynumber: 1.9 Consensus size: 98
14915914 TTAAACCTCA
* * *
14915924 TTGATTTACGATCACAACTTTAGTTCATTGATTTACAATCATAAACAACTCATTTAGAGTGTGTT
1 TTGATTTACGATCACAACTTTAGTTCATTAATTTACAATCATAAACAACTCATTTAGAGTGTATC
* * *
14915989 GATTTACGATCTCAAATCCATTTAAACAATTTT
66 AATTTACGATCGCAAATCCATTCAAACAATTTT
* * *
14916022 TTGATTTATGATCACAGCTTTAGTTCATTAATTTACGATCATGAAA-AACTCATTTAGAGT-TCA
1 TTGATTTACGATCACAACTTTAGTTCATTAATTTACAATCAT-AAACAACTCATTTAGAGTGT-A
*
14916085 TCAATTTACGATCGCAATTCCATTCAAACA
64 TCAATTTACGATCGCAAATCCATTCAAACA
14916115 GTTTGCTTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
97 1 0.01
98 77 0.95
99 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.38
Consensus pattern (98 bp):
TTGATTTACGATCACAACTTTAGTTCATTAATTTACAATCATAAACAACTCATTTAGAGTGTATC
AATTTACGATCGCAAATCCATTCAAACAATTTT
Found at i:14922487 original size:19 final size:19
Alignment explanation
Indices: 14922463--14922507 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
14922453 ACCTTTCAGG
14922463 CACACATGATTCCACTAAT
1 CACACATGATTCCACTAAT
*
14922482 CACACATGGTTCCACTAAT
1 CACACATGATTCCACTAAT
*
14922501 CAAACAT
1 CACACAT
14922508 CATAAACGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.38, C:0.31, G:0.07, T:0.24
Consensus pattern (19 bp):
CACACATGATTCCACTAAT
Found at i:14922585 original size:22 final size:22
Alignment explanation
Indices: 14922560--14922602 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
14922550 TTTACTAAGA
*
14922560 GTTTAACACATAACTGATATGT
1 GTTTAACACAGAACTGATATGT
*
14922582 GTTTAACACAGAACTGGTATG
1 GTTTAACACAGAACTGATATG
14922603 CGTCCCACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (22 bp):
GTTTAACACAGAACTGATATGT
Found at i:14925962 original size:28 final size:28
Alignment explanation
Indices: 14925920--14925990 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
14925910 CGGGTGTGTG
* * * *
14925920 TCCAGGTCGTATGGGCCACATGATAGTA
1 TCCAGGCCGTGTGGGCCACACGACAGTA
* *
14925948 TCCAGGCCGTGTGGGCCACACGACCGTG
1 TCCAGGCCGTGTGGGCCACACGACAGTA
*
14925976 TCCAAGCCGTGTGGG
1 TCCAGGCCGTGTGGG
14925991 TGGCCATGTA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (28 bp):
TCCAGGCCGTGTGGGCCACACGACAGTA
Found at i:14929086 original size:29 final size:29
Alignment explanation
Indices: 14929045--14929149 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
14929035 TTGCACTTAG
* *
14929045 GTGCAATAATAGAACAGAGTGGCACCGAA
1 GTGCATTATTAGAACAGAGTGGCACCGAA
* * ****
14929074 GTGCAGTATTAGAATAGAACAACACCG-A
1 GTGCATTATTAGAACAGAGTGGCACCGAA
* * * *
14929102 GCTGCTTTATCATAACAGAGTGGCACCAAA
1 G-TGCATTATTAGAACAGAGTGGCACCGAA
14929132 GTGCATTATTAGAACAGA
1 GTGCATTATTAGAACAGA
14929150 AAGCGCTGAA
Statistics
Matches: 54, Mismatches: 20, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
28 2 0.04
29 50 0.93
30 2 0.04
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (29 bp):
GTGCATTATTAGAACAGAGTGGCACCGAA
Found at i:14940672 original size:46 final size:44
Alignment explanation
Indices: 14940616--14940704 Score: 151
Period size: 46 Copynumber: 2.0 Consensus size: 44
14940606 TTTGGTTCGT
*
14940616 TGTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAC
1 TGTAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAC
14940662 TGTAATGGAATAGAGGCGTAATGGTATTCTTGTGTTTGGTTGA
1 TGTAATGGAATAGAGGCGTAATGGTATTCTTGTGTTTGGTTGA
14940705 ATGGAATAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 17 0.40
45 3 0.07
46 22 0.52
ACGTcount: A:0.25, C:0.06, G:0.30, T:0.39
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATGGTATTCTTGTGTTTGGTTGAC
Found at i:14940708 original size:39 final size:42
Alignment explanation
Indices: 14940614--14940724 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 42
14940604 CGTTTGGTTC
*
14940614 GTTGTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTG
1 GTTGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTG
14940656 GTTGACTGTAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTG
1 G-T---TGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTG
*
14940700 GTTG-AATGGAATAGAGGTGTAATAG
1 GTTGTAATGGAATAGAGGCGTAATAG
14940725 CATAAGGAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
39 18 0.29
40 3 0.05
42 1 0.02
43 2 0.03
44 13 0.21
45 3 0.05
46 22 0.35
ACGTcount: A:0.27, C:0.05, G:0.32, T:0.37
Consensus pattern (42 bp):
GTTGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTG
Found at i:14942341 original size:49 final size:49
Alignment explanation
Indices: 14942269--14942372 Score: 145
Period size: 49 Copynumber: 2.1 Consensus size: 49
14942259 GAAAAAAAAC
* * ** * *
14942269 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATAAAAAACTCAACACTGTATA
*
14942318 AAATTAAAATTGAGTTCAATATCATGAATAAAAAACTCAACACTGTATA
1 AAATTAAAATTAAGTTCAATATCATGAATAAAAAACTCAACACTGTATA
14942367 AAATTA
1 AAATTA
14942373 TAACACATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.31
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATAAAAAACTCAACACTGTATA
Found at i:14944587 original size:29 final size:29
Alignment explanation
Indices: 14944495--14944611 Score: 120
Period size: 29 Copynumber: 4.1 Consensus size: 29
14944485 AATATTTTTA
14944495 GATTATTTTGATGTATTTCAATCATTATC
1 GATTATTTTGATGTATTTCAATCATTATC
** * *
14944524 ---TATTTAT-ATAAATTTTAAT-ATT-TT
1 GATTATTT-TGATGTATTTCAATCATTATC
*
14944548 AATTTCATTTTGATGTATTTCAATCATTATC
1 GA-TT-ATTTTGATGTATTTCAATCATTATC
14944579 GATTATTTTGATGTATTTCAATCATTATC
1 GATTATTTTGATGTATTTCAATCATTATC
14944608 GATT
1 GATT
14944612 TATATAGTCC
Statistics
Matches: 70, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
24 1 0.01
25 3 0.04
26 14 0.20
27 1 0.01
28 2 0.03
29 42 0.60
30 5 0.07
31 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.54
Consensus pattern (29 bp):
GATTATTTTGATGTATTTCAATCATTATC
Found at i:14950831 original size:16 final size:15
Alignment explanation
Indices: 14950810--14950851 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
14950800 CCCTCGTCTC
14950810 CCCATCTTCTCTGATT
1 CCCATCTTCTCTGA-T
*
14950826 CCCATCTT-TCAGAT
1 CCCATCTTCTCTGAT
*
14950840 CCAATCTTCTCT
1 CCCATCTTCTCT
14950852 AGTCCTGGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 8 0.36
15 6 0.27
16 8 0.36
ACGTcount: A:0.17, C:0.38, G:0.05, T:0.40
Consensus pattern (15 bp):
CCCATCTTCTCTGAT
Found at i:14962452 original size:16 final size:16
Alignment explanation
Indices: 14962431--14962464 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14962421 CATTTCATTA
* *
14962431 TTATGTCTTTTTTACT
1 TTATGTATTTTATACT
14962447 TTATGTATTTTATACT
1 TTATGTATTTTATACT
14962463 TT
1 TT
14962465 TCATGCATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.68
Consensus pattern (16 bp):
TTATGTATTTTATACT
Found at i:14963581 original size:25 final size:25
Alignment explanation
Indices: 14963553--14963601 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
14963543 TTCAACTAAA
*
14963553 GAATTTGATTAAATAATTTTCTTGT
1 GAATTTGATTAAAGAATTTTCTTGT
14963578 GAATTTGATTAAAGAATTTTCTTG
1 GAATTTGATTAAAGAATTTTCTTG
14963602 AAAAATCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (25 bp):
GAATTTGATTAAAGAATTTTCTTGT
Found at i:14964152 original size:12 final size:12
Alignment explanation
Indices: 14964135--14964159 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14964125 TTGTAATAAG
14964135 ATTTAATATTAA
1 ATTTAATATTAA
14964147 ATTTAATATTAA
1 ATTTAATATTAA
14964159 A
1 A
14964160 GTGATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:14964189 original size:19 final size:21
Alignment explanation
Indices: 14964146--14964190 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
14964136 TTTAATATTA
14964146 AATTTAATATTAAAGTGATTT
1 AATTTAATATTAAAGTGATTT
14964167 AATTTAAT-TTAAAGTGA-TT
1 AATTTAATATTAAAGTGATTT
14964186 AATTT
1 AATTT
14964191 TTTTTGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 7 0.29
20 9 0.38
21 8 0.33
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (21 bp):
AATTTAATATTAAAGTGATTT
Found at i:14966663 original size:58 final size:60
Alignment explanation
Indices: 14966596--14966713 Score: 152
Period size: 61 Copynumber: 2.0 Consensus size: 60
14966586 ATCACTTTAA
* *
14966596 TATTAAATTAATATAATAGTTA-T-CAAGATAAATA-TTAGATTAAATTTAATATTAAATC
1 TATTAAATTAAAATAATAGTTACTACAAAATAAATATTTA-ATTAAATTTAATATTAAATC
* * *
14966654 TATTTAATTAAAATAATATTTATCTACAAAATAAATATTTAATTTAATTTAATATTAAAT
1 TATTAAATTAAAATAATAGTTA-CTACAAAATAAATATTTAATTAAATTTAATATTAAAT
14966714 TTAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
58 19 0.37
60 1 0.02
61 28 0.55
62 3 0.06
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (60 bp):
TATTAAATTAAAATAATAGTTACTACAAAATAAATATTTAATTAAATTTAATATTAAATC
Found at i:14966709 original size:17 final size:18
Alignment explanation
Indices: 14966687--14966723 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
14966677 CTACAAAATA
*
14966687 AATATTTAATTTAAT-TT
1 AATATTAAATTTAATATT
14966704 AATATTAAATTTAATATT
1 AATATTAAATTTAATATT
14966722 AA
1 AA
14966724 GATAATCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATTAAATTTAATATT
Found at i:14966716 original size:12 final size:12
Alignment explanation
Indices: 14966690--14966723 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
14966680 CAAAATAAAT
14966690 ATTTAAT-TT-A
1 ATTTAATATTAA
14966700 ATTTAATATTAA
1 ATTTAATATTAA
14966712 ATTTAATATTAA
1 ATTTAATATTAA
14966724 GATAATCACT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 7 0.32
11 2 0.09
12 13 0.59
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:14967321 original size:13 final size:13
Alignment explanation
Indices: 14967299--14967332 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
14967289 TTCCAAAATT
14967299 AATT-TTTAATCA
1 AATTCTTTAATCA
14967311 AATTCTTTAATCA
1 AATTCTTTAATCA
14967324 AATTCTTTA
1 AATTCTTTA
14967333 GTTGAACAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTCTTTAATCA
Found at i:14977503 original size:27 final size:28
Alignment explanation
Indices: 14977473--14977548 Score: 88
Period size: 27 Copynumber: 2.8 Consensus size: 28
14977463 ATATTTATCG
14977473 TAATTTTAAATAATTTATATAAATT-TT-
1 TAATTTTAAATAATTT-TATAAATTCTTA
14977500 TAATTTT-AATAATTTT-TAAATTCTTA
1 TAATTTTAAATAATTTTATAAATTCTTA
*
14977526 GCAATTTTTAAATAATTTTATAA
1 -TAA-TTTTAAATAATTTTATAA
14977549 TTATTTGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
24 6 0.14
25 3 0.07
26 8 0.19
27 9 0.21
28 4 0.10
29 9 0.21
30 3 0.07
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TAATTTTAAATAATTTTATAAATTCTTA
Found at i:14978095 original size:29 final size:29
Alignment explanation
Indices: 14978062--14978130 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
14978052 ATGACCTATT
14978062 TATTAGTTTATCTAATATTCTAGGTAGAA
1 TATTAGTTTATCTAATATTCTAGGTAGAA
14978091 TATTAGTTTATCTAATATTCTAGGTAGAA
1 TATTAGTTTATCTAATATTCTAGGTAGAA
*
14978120 TATTACTTTAT
1 TATTAGTTTAT
14978131 GGTAGAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (29 bp):
TATTAGTTTATCTAATATTCTAGGTAGAA
Found at i:14989751 original size:14 final size:15
Alignment explanation
Indices: 14989719--14989755 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
14989709 ACGTTCATAT
14989719 AAATTAAAATTGATA
1 AAATTAAAATTGATA
14989734 AAATTAAAA-T-ATA
1 AAATTAAAATTGATA
14989747 GAAATTAAA
1 -AAATTAAA
14989756 TTTACAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 3 0.14
14 9 0.43
15 9 0.43
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
AAATTAAAATTGATA
Found at i:14990118 original size:31 final size:29
Alignment explanation
Indices: 14990083--14990161 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 29
14990073 AATATTAAAT
14990083 TTATACATAAATTTTGATCTAATGTGTAATA
1 TTATACATAAATTTTGAT-T-ATGTGTAATA
* * * * *
14990114 TTATATATAAAATTTGATTTTGTGTGATT
1 TTATACATAAATTTTGATTATGTGTAATA
14990143 TTATACATGAAATTTTGAT
1 TTATACAT-AAATTTTGAT
14990162 GTGTTTCAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 14 0.35
30 10 0.25
31 16 0.40
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.49
Consensus pattern (29 bp):
TTATACATAAATTTTGATTATGTGTAATA
Found at i:14990147 original size:29 final size:31
Alignment explanation
Indices: 14990082--14990157 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 31
14990072 AAATATTAAA
*
14990082 TTTATACATAAATTTTGATCTAATGTGTAAT
1 TTTATACATAAAATTTGATCTAATGTGTAAT
* * * *
14990113 ATTATATATAAAATTTGAT-T-TTGTGTGAT
1 TTTATACATAAAATTTGATCTAATGTGTAAT
*
14990142 TTTATACATGAAATTT
1 TTTATACATAAAATTT
14990158 TGATGTGTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 20 0.54
30 1 0.03
31 16 0.43
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.50
Consensus pattern (31 bp):
TTTATACATAAAATTTGATCTAATGTGTAAT
Found at i:14994174 original size:98 final size:98
Alignment explanation
Indices: 14994005--14994200 Score: 311
Period size: 98 Copynumber: 2.0 Consensus size: 98
14993995 TAGAAGAAGT
* ** *
14994005 ATAGTCCTATACGAATACAATTTGTGCACATTGAACTTTTCAGGCTGGATCAAACAAGATTGAGT
1 ATAGTCCTATACGAATACAACTTGTGCACATCAAACTTTTCAGGCTGAATCAAACAAGATTGAGT
*
14994070 CACACAAGTTTAACATGTCAAATGAACTCTTGC
66 CACACAAGTCTAACATGTCAAATGAACTCTTGC
* *
14994103 ATAGTCCTATACGAATACAACTTGTGCACATCAAACTTTTCAGGCTGAATCTAACAGGATTGAGT
1 ATAGTCCTATACGAATACAACTTGTGCACATCAAACTTTTCAGGCTGAATCAAACAAGATTGAGT
* *
14994168 CACACAAGTCTAATATGTCAAATGCACTCTTGC
66 CACACAAGTCTAACATGTCAAATGAACTCTTGC
14994201 TTCTATTTTG
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (98 bp):
ATAGTCCTATACGAATACAACTTGTGCACATCAAACTTTTCAGGCTGAATCAAACAAGATTGAGT
CACACAAGTCTAACATGTCAAATGAACTCTTGC
Found at i:14999655 original size:13 final size:12
Alignment explanation
Indices: 14999636--14999673 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
14999626 ACTTTTAAAA
14999636 AAATTTTATTTT
1 AAATTTTATTTT
14999648 AAAGTTTTATTTT
1 AAA-TTTTATTTT
14999661 AAATTTTAATTTT
1 AAATTTT-ATTTT
14999674 TAAGAATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (12 bp):
AAATTTTATTTT
Found at i:15005252 original size:114 final size:114
Alignment explanation
Indices: 15005042--15005384 Score: 643
Period size: 114 Copynumber: 3.0 Consensus size: 114
15005032 AATTTCTGTT
* * * *
15005042 CTATATTTAATTTCTTTTCCCTACTTATTCTACATCACTGATGCA-CAAGTACTTACTAAAAGGG
1 CTATATTTAATTCCTTTTCCCTACTTATTCTACATCACTGATGCACCTACTATTTACTAAAAGGG
15005106 AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
66 AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
15005155 CTATATTTAATTCCTTTTCCCTACTTATTCTACATCACTGATGCACCTACTATTTACTAAAAGGG
1 CTATATTTAATTCCTTTTCCCTACTTATTCTACATCACTGATGCACCTACTATTTACTAAAAGGG
15005220 AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
66 AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
15005269 CTATATTTAATTCCTTTTCCCTACTTATTCTACATCACTGATGCACCTACTATTTACTAAAAGGG
1 CTATATTTAATTCCTTTTCCCTACTTATTCTACATCACTGATGCACCTACTATTTACTAAAAGGG
15005334 AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
66 AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
15005383 CT
1 CT
15005385 TTGGAATTAT
Statistics
Matches: 225, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
113 44 0.20
114 181 0.80
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (114 bp):
CTATATTTAATTCCTTTTCCCTACTTATTCTACATCACTGATGCACCTACTATTTACTAAAAGGG
AAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
Found at i:15011599 original size:139 final size:140
Alignment explanation
Indices: 15011434--15011713 Score: 553
Period size: 139 Copynumber: 2.0 Consensus size: 140
15011424 TATAAAATAG
15011434 TCAAATATAAATATTAATAATTATATTATAAATAAAAAATAAGCATACAAACAATAATAATTTTA
1 TCAAATATAAATATTAATAATTATATTATAAATAAAAAATAAGCATACAAACAATAATAATTTTA
15011499 TTAATATATGCTAATGGAATAATAAAAAAGCTTGAAAAGATTTATTAAATGAACTTAAACGAGTT
66 TTAATATATGCTAATGGAATAATAAAAAAGCTTGAAAAGATTTATTAAATGAACTTAAACGAGTT
15011564 TGTTCATGAA
131 TGTTCATGAA
15011574 TCAAATATAAA-ATTAATAATTATATTATAAATAAAAAATAAGCATACAAACAATAATAATTTTA
1 TCAAATATAAATATTAATAATTATATTATAAATAAAAAATAAGCATACAAACAATAATAATTTTA
15011638 TTAATATATGCTAATGGAATAATAAAAAAGCTTGAAAAGATTTATTAAATGAACTTAAACGAGTT
66 TTAATATATGCTAATGGAATAATAAAAAAGCTTGAAAAGATTTATTAAATGAACTTAAACGAGTT
15011703 TGTTCATGAA
131 TGTTCATGAA
15011713 T
1 T
15011714 ATAAATGAAT
Statistics
Matches: 140, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
139 129 0.92
140 11 0.08
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (140 bp):
TCAAATATAAATATTAATAATTATATTATAAATAAAAAATAAGCATACAAACAATAATAATTTTA
TTAATATATGCTAATGGAATAATAAAAAAGCTTGAAAAGATTTATTAAATGAACTTAAACGAGTT
TGTTCATGAA
Found at i:15015217 original size:242 final size:242
Alignment explanation
Indices: 15014792--15015278 Score: 902
Period size: 242 Copynumber: 2.0 Consensus size: 242
15014782 CTATTTATAG
15014792 TTGAGCTCCCTTCAAACTGACGGTATAGATCGAATTACATCAACGGATGAGATTAAGCCTATCCC
1 TTGAGCTCCCTTCAAACTGACGGTATAGATCGAATTACATCAACGGATGAGATTAAGCCTATCCC
* *
15014857 TAAAATCAAGGGATTTACAAGATTACATAATCAAATTAAATCTAATATTATCATATATGATTCCC
66 TAAAATCAAGGAATTTACAAGATTACATAATCAAATTAAATCTAATATTATCAGATATGATTCCC
* *
15014922 CGCAATCTTCTAAGATTAGTTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
131 CACAATCTTCTAAAATTAGTTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
*
15014987 GGGCCACCCAGGCTTCTCCATCAATTCTTTGAATCGAGTCGGTTCTC
196 GGGCCACCCAGGCTTCTCCATCAATTATTTGAATCGAGTCGGTTCTC
*
15015034 TTGAGCTCCCTTCAAATTGACGGTATAGATCGAATTACATCAACGGATGAGATTAAGCCTATCCC
1 TTGAGCTCCCTTCAAACTGACGGTATAGATCGAATTACATCAACGGATGAGATTAAGCCTATCCC
*
15015099 TAAAATCAAGGAATTTACAAGATTACATAATCAAATTAAATCTAATATTATTAGATATGATTCCC
66 TAAAATCAAGGAATTTACAAGATTACATAATCAAATTAAATCTAATATTATCAGATATGATTCCC
*
15015164 CACAATCTTTTAAAATTAGTTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
131 CACAATCTTCTAAAATTAGTTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
15015229 GGGCCACCCAGGCTTCTCCATCAATTATTTGAATCGAGTCGGTTCTC
196 GGGCCACCCAGGCTTCTCCATCAATTATTTGAATCGAGTCGGTTCTC
15015276 TTG
1 TTG
15015279 GGTCAAATGA
Statistics
Matches: 237, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
242 237 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (242 bp):
TTGAGCTCCCTTCAAACTGACGGTATAGATCGAATTACATCAACGGATGAGATTAAGCCTATCCC
TAAAATCAAGGAATTTACAAGATTACATAATCAAATTAAATCTAATATTATCAGATATGATTCCC
CACAATCTTCTAAAATTAGTTTCCCTATTTACCAAGGTAGCCTAACTTCCTATATCTGCATCATT
GGGCCACCCAGGCTTCTCCATCAATTATTTGAATCGAGTCGGTTCTC
Found at i:15019975 original size:2 final size:2
Alignment explanation
Indices: 15019968--15020195 Score: 164
Period size: 2 Copynumber: 116.5 Consensus size: 2
15019958 AGATGAAACT
* * *
15019968 AG AG AG AG AG AG AG AG AG -G AG GG AG GG AG AG AG GG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * *
15020009 GG AG AG GG A- AG -G AG GG AG AG AG ATG -G AG AG AG AG AG AG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG A-G AG AG AG AG AG AG AG AG
* * * *
15020049 AG AG AG AG AG GG AG AG GG AG AA AG AG AG AG -G CAG AA AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -AG AG AG AG AG
* * * * * *
15020091 AG AG AG GG AG GG GG AG AG -G GG AG AG GG AG AG AG AG AG AG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * *
15020132 AG AA AG AG AG AG AG AG TG AG GG GG AG AG -G GG AG AG GG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* *
15020173 AG AG AG AG AG AA AA AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG A
15020196 AGGTGAAAAT
Statistics
Matches: 175, Mismatches: 42, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
1 7 0.04
2 166 0.95
3 2 0.01
ACGTcount: A:0.42, C:0.00, G:0.57, T:0.01
Consensus pattern (2 bp):
AG
Found at i:15022694 original size:31 final size:31
Alignment explanation
Indices: 15022657--15022717 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
15022647 TAATTGCATG
15022657 GTATGATTTTTGATACGCTTACTAAGCTCTC
1 GTATGATTTTTGATACGCTTACTAAGCTCTC
*
15022688 GTATGATTTTTGATACGCTTGCTAAGCTCT
1 GTATGATTTTTGATACGCTTACTAAGCTCT
15022718 TGTGAGCTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (31 bp):
GTATGATTTTTGATACGCTTACTAAGCTCTC
Found at i:15023250 original size:17 final size:17
Alignment explanation
Indices: 15023228--15023260 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15023218 TTGATGAGAT
*
15023228 AAAAATAAATAAATAAG
1 AAAAATAAACAAATAAG
15023245 AAAAATAAACAAATAA
1 AAAAATAAACAAATAA
15023261 ATTAAAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAAATAAACAAATAAG
Found at i:15023260 original size:21 final size:21
Alignment explanation
Indices: 15023234--15023275 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
15023224 AGATAAAAAT
15023234 AAATAAA-TAAGAAAAATAAAC
1 AAATAAATTAA-AAAAATAAAC
*
15023255 AAATAAATTAAAAGAATAAAC
1 AAATAAATTAAAAAAATAAAC
15023276 CTATCGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.17
Consensus pattern (21 bp):
AAATAAATTAAAAAAATAAAC
Found at i:15024535 original size:23 final size:23
Alignment explanation
Indices: 15024508--15024612 Score: 129
Period size: 23 Copynumber: 4.6 Consensus size: 23
15024498 ATAAGTGCCA
* * *
15024508 CACTGGTATGTAGCTGAAGCCAC
1 CACTGATATGTAGCCGAAGCTAC
* **
15024531 CACTGATACGTAGCCGTTGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15024554 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15024577 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15024600 CACTGAAATGTAG
1 CACTGATATGTAG
15024613 GCGNNNNNNN
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:15024579 original size:46 final size:46
Alignment explanation
Indices: 15024515--15024612 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
15024505 CCACACTGGT
* *
15024515 ATGTAGCTGAAGCCACCACTGATACGTAGCCGTTGCTACCACTGAA
1 ATGTAGCCGAAGCCACCACTGATACGTAGCCGTAGCTACCACTGAA
* *
15024561 ATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAA
1 ATGTAGCCGAAGCCACCACTGATACGTAGCCGTAGCTACCACTGAA
15024607 ATGTAG
1 ATGTAG
15024613 GCGNNNNNNN
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (46 bp):
ATGTAGCCGAAGCCACCACTGATACGTAGCCGTAGCTACCACTGAA
Found at i:15027214 original size:2 final size:2
Alignment explanation
Indices: 15027209--15027235 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15027199 AAACACACAA
15027209 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
15027236 AACTACTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15031801 original size:4 final size:4
Alignment explanation
Indices: 15031792--15031862 Score: 72
Period size: 4 Copynumber: 17.0 Consensus size: 4
15031782 AATGAGATAA
*
15031792 AAAT AAAT AAAT AACGA- AAAT AAAT AAAT AAAT AAAT AAGAA AAAT AAAT
1 AAAT AAAT AAAT AA--AT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT
* *
15031842 AAAT GAATT AAAT TAAT AAAT
1 AAAT -AAAT AAAT AAAT AAAT
15031863 CAATCAGGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
3 1 0.02
4 46 0.82
5 8 0.14
6 1 0.02
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:15031818 original size:21 final size:21
Alignment explanation
Indices: 15031790--15031845 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
15031780 TCAATGAGAT
*
15031790 AAAAATAAATAAATAACGAA-
1 AAAAATAAATAAATAAAGAAG
*
15031810 AATAAATAAATAAATAAATAAG
1 AA-AAATAAATAAATAAAGAAG
15031832 AAAAATAAATAAAT
1 AAAAATAAATAAAT
15031846 GAATTAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 2 0.06
21 28 0.88
22 2 0.06
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.20
Consensus pattern (21 bp):
AAAAATAAATAAATAAAGAAG
Found at i:15031826 original size:25 final size:25
Alignment explanation
Indices: 15031792--15031854 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 25
15031782 AATGAGATAA
15031792 AAATAAATAAATAACG-AAAATAAAT
1 AAATAAATAAATAA-GAAAAATAAAT
15031817 AAATAAATAAATAAGAAAAATAAAT
1 AAATAAATAAATAAGAAAAATAAAT
*
15031842 AAATGAATTAAAT
1 AAAT-AAATAAAT
15031855 TAATAAATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
24 1 0.03
25 27 0.77
26 7 0.20
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (25 bp):
AAATAAATAAATAAGAAAAATAAAT
Found at i:15031854 original size:17 final size:16
Alignment explanation
Indices: 15031809--15031862 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 16
15031799 TAAATAACGA
*
15031809 AAATAAATAAATAAAT
1 AAATAAATGAATAAAT
15031825 AAAT-AA-GAA-AAAT
1 AAATAAATGAATAAAT
15031838 AAATAAATGAATTAAAT
1 AAATAAATGAA-TAAAT
*
15031855 TAATAAAT
1 AAATAAAT
15031863 CAATCAGGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
13 8 0.25
14 4 0.12
15 5 0.16
16 4 0.12
17 11 0.34
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (16 bp):
AAATAAATGAATAAAT
Found at i:15039637 original size:12 final size:12
Alignment explanation
Indices: 15039620--15039645 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15039610 GGTGTTCATT
15039620 CGGTTAACCGAC
1 CGGTTAACCGAC
15039632 CGGTTAACCGAC
1 CGGTTAACCGAC
15039644 CG
1 CG
15039646 AAATTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.35, G:0.27, T:0.15
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:15039818 original size:9 final size:9
Alignment explanation
Indices: 15039804--15039949 Score: 292
Period size: 9 Copynumber: 16.2 Consensus size: 9
15039794 TTTGGTTTAA
15039804 AATTACCCG
1 AATTACCCG
15039813 AATTACCCG
1 AATTACCCG
15039822 AATTACCCG
1 AATTACCCG
15039831 AATTACCCG
1 AATTACCCG
15039840 AATTACCCG
1 AATTACCCG
15039849 AATTACCCG
1 AATTACCCG
15039858 AATTACCCG
1 AATTACCCG
15039867 AATTACCCG
1 AATTACCCG
15039876 AATTACCCG
1 AATTACCCG
15039885 AATTACCCG
1 AATTACCCG
15039894 AATTACCCG
1 AATTACCCG
15039903 AATTACCCG
1 AATTACCCG
15039912 AATTACCCG
1 AATTACCCG
15039921 AATTACCCG
1 AATTACCCG
15039930 AATTACCCG
1 AATTACCCG
15039939 AATTACCCG
1 AATTACCCG
15039948 AA
1 AA
15039950 AAAATTCGGT
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 137 1.00
ACGTcount: A:0.34, C:0.33, G:0.11, T:0.22
Consensus pattern (9 bp):
AATTACCCG
Found at i:15040201 original size:30 final size:30
Alignment explanation
Indices: 15040054--15040202 Score: 199
Period size: 30 Copynumber: 5.0 Consensus size: 30
15040044 CGGGAACCAT
*
15040054 AATTATAATGTCAACTTGTGTGAACAATTC
1 AATTATAATGTCAACTTGTGTGAGCAATTC
*
15040084 AATTATAATGTCAACTTATGTGAGCAATTC
1 AATTATAATGTCAACTTGTGTGAGCAATTC
* * * *
15040114 AATTATAATGTCAGCTTGTTTAAGCAATCC
1 AATTATAATGTCAACTTGTGTGAGCAATTC
* **
15040144 GATTATAATGTCGGCTTGTGTGAGCAATTC
1 AATTATAATGTCAACTTGTGTGAGCAATTC
* *
15040174 AATTATAATGCCAACTTGTGTGGGCAATT
1 AATTATAATGTCAACTTGTGTGAGCAATT
15040203 ATAAAAATAC
Statistics
Matches: 102, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 102 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.36
Consensus pattern (30 bp):
AATTATAATGTCAACTTGTGTGAGCAATTC
Found at i:15040839 original size:20 final size:21
Alignment explanation
Indices: 15040802--15040841 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15040792 TTTGAGATGT
15040802 GTATGTGGAAATTGAATTGGA
1 GTATGTGGAAATTGAATTGGA
*
15040823 GTATTTGGAAA-TGAATTGG
1 GTATGTGGAAATTGAATTGG
15040842 TTTTGACAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (21 bp):
GTATGTGGAAATTGAATTGGA
Found at i:15042818 original size:43 final size:42
Alignment explanation
Indices: 15042752--15042883 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 42
15042742 TCGTAAAATA
* *
15042752 CCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATAACGATG
1 CCAATGTCCCAGACAG-GGTCTTACACGTAATCAAAT-ACGATG
* * * *
15042795 TCACTGTCCCAGACAGGGTCTTACACATAATCATATACGATG
1 CCAATGTCCCAGACAGGGTCTTACACGTAATCAAATACGATG
* *
15042837 CCAATGTCCCAGACATGGCCTTACACGTAAATCTGAAAT-CGATG
1 CCAATGTCCCAGACAGGGTCTTACACGT-AATC--AAATACGATG
15042881 CCA
1 CCA
15042884 TCGTCTCATA
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.40
43 32 0.44
44 9 0.12
45 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (42 bp):
CCAATGTCCCAGACAGGGTCTTACACGTAATCAAATACGATG
Found at i:15042848 original size:42 final size:43
Alignment explanation
Indices: 15042752--15042862 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
15042742 TCGTAAAATA
* **
15042752 CCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATAACGATG
1 CCAATGTCCCAGACAG-GGTCTTACACATAATCAAATAACGATG
* * *
15042795 TCACTGTCCCAGACAGGGTCTTACACATAATCATAT-ACGATG
1 CCAATGTCCCAGACAGGGTCTTACACATAATCAAATAACGATG
* *
15042837 CCAATGTCCCAGACATGGCCTTACAC
1 CCAATGTCCCAGACAGGGTCTTACAC
15042863 GTAAATCTGA
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 28 0.49
43 28 0.49
44 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
CCAATGTCCCAGACAGGGTCTTACACATAATCAAATAACGATG
Found at i:15049214 original size:2 final size:2
Alignment explanation
Indices: 15049207--15049236 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15049197 ACTGGTTTTC
15049207 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
15049237 TCACTATGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:15051033 original size:23 final size:22
Alignment explanation
Indices: 15051007--15051050 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
15050997 TTTTATGCTT
15051007 CAAAAACCTGTCA-CAAAACTCAA
1 CAAAAACC-GT-ATCAAAACTCAA
*
15051030 CAAAAGCCGTATCAAAACTCA
1 CAAAAACCGTATCAAAACTCA
15051051 CACTTAGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 11 0.58
23 7 0.37
ACGTcount: A:0.50, C:0.30, G:0.07, T:0.14
Consensus pattern (22 bp):
CAAAAACCGTATCAAAACTCAA
Found at i:15059602 original size:24 final size:24
Alignment explanation
Indices: 15059575--15059623 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
15059565 AAATATTTAA
15059575 ACAGGTTGTTCAGGAGATAACTAC
1 ACAGGTTGTTCAGGAGATAACTAC
15059599 ACAGGTTGTTCAGGAGATAACTAC
1 ACAGGTTGTTCAGGAGATAACTAC
15059623 A
1 A
15059624 AATAAACAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (24 bp):
ACAGGTTGTTCAGGAGATAACTAC
Found at i:15066613 original size:1 final size:1
Alignment explanation
Indices: 15066604--15066636 Score: 57
Period size: 1 Copynumber: 33.0 Consensus size: 1
15066594 AATCAGTAAA
*
15066604 TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15066637 GGGGGGGGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:15075529 original size:17 final size:18
Alignment explanation
Indices: 15075503--15075536 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15075493 ATAAAATTAT
15075503 ATAATATT-AATAATAAA
1 ATAATATTAAATAATAAA
*
15075520 ATAATTTTAAATAATAA
1 ATAATATTAAATAATAA
15075537 TTAAGTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATATTAAATAATAAA
Found at i:15075534 original size:18 final size:20
Alignment explanation
Indices: 15075511--15075560 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
15075501 ATATAATATT
15075511 AATAATAAAA-TAATTTTA-
1 AATAATAAAAGTAATTTTAC
15075529 AATAATAATTAAGTAATTTTAC
1 AATAATAA--AAGTAATTTTAC
*
15075551 AATATTAAAA
1 AATAATAAAA
15075561 ATATATATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 8 0.30
20 4 0.15
21 8 0.30
22 7 0.26
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
AATAATAAAAGTAATTTTAC
Found at i:15075536 original size:21 final size:22
Alignment explanation
Indices: 15075510--15075554 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
15075500 TATATAATAT
15075510 TAATAATAAAATAATTTTA-AA
1 TAATAATAAAATAATTTTACAA
* *
15075531 TAATAATTAAGTAATTTTACAA
1 TAATAATAAAATAATTTTACAA
15075553 TA
1 TA
15075555 TTAAAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (22 bp):
TAATAATAAAATAATTTTACAA
Found at i:15078591 original size:22 final size:21
Alignment explanation
Indices: 15078556--15078664 Score: 76
Period size: 22 Copynumber: 5.0 Consensus size: 21
15078546 TGTACATAAT
* *
15078556 TTGCACTACAGTGCCTACTGC
1 TTGCACTTCGGTGCCTACTGC
*
15078577 TCTGCACTTCGGTGCCTATTGC
1 T-TGCACTTCGGTGCCTACTGC
* * **
15078599 TTTGCACTTCGGTACTTACTAA
1 -TTGCACTTCGGTGCCTACTGC
* *
15078621 TTCGCACTTCTGTGCCTACT-A
1 TT-GCACTTCGGTGCCTACTGC
15078642 TTAAAGCACTTCGGTGCCTACTG
1 TT---GCACTTCGGTGCCTACTG
15078665 GTGTGGTTTA
Statistics
Matches: 69, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
21 6 0.09
22 46 0.67
23 17 0.25
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.35
Consensus pattern (21 bp):
TTGCACTTCGGTGCCTACTGC
Found at i:15081012 original size:10 final size:10
Alignment explanation
Indices: 15080997--15081029 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
15080987 TGGGCCATTA
15080997 TAATTGGGTT
1 TAATTGGGTT
15081007 TAATTGGG-T
1 TAATTGGGTT
15081016 TAATTTGGGTT
1 TAA-TTGGGTT
15081027 TAA
1 TAA
15081030 GGTATTGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.19
10 13 0.62
11 4 0.19
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.48
Consensus pattern (10 bp):
TAATTGGGTT
Found at i:15083835 original size:23 final size:23
Alignment explanation
Indices: 15083798--15083848 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
15083788 ATATTCTAAG
15083798 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
15083821 TGTAATA-CCCTGAAAATTACTAC
1 TGTAATATCCC-GAAAATTACTAC
*
15083844 AGTAA
1 TGTAA
15083849 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (23 bp):
TGTAATATCCCGAAAATTACTAC
Found at i:15094970 original size:22 final size:23
Alignment explanation
Indices: 15094945--15094987 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
15094935 CTATCTACAA
15094945 ATCAAATC-TCTAAGATTACATT
1 ATCAAATCTTCTAAGATTACATT
*
15094967 ATCATATCTTCTAAGATTACA
1 ATCAAATCTTCTAAGATTACA
15094988 AGTTATCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (23 bp):
ATCAAATCTTCTAAGATTACATT
Found at i:15096998 original size:29 final size:29
Alignment explanation
Indices: 15096965--15097032 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
15096955 CATTGATACT
15096965 GCCATTGATAACACTTTTGTGGACAAGAC
1 GCCATTGATAACACTTTTGTGGACAAGAC
15096994 GCCATTGATAACACTTTTGTGGACAAGAC
1 GCCATTGATAACACTTTTGTGGACAAGAC
* *
15097023 ACCACTGATA
1 GCCATTGATA
15097033 TGCAGATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (29 bp):
GCCATTGATAACACTTTTGTGGACAAGAC
Found at i:15097068 original size:49 final size:49
Alignment explanation
Indices: 15096994--15097195 Score: 255
Period size: 49 Copynumber: 4.1 Consensus size: 49
15096984 TGGACAAGAC
* * *
15096994 GCCATTGATAACACTTTTGTGGACAAGACACCACTGATATGCAGATATACT
1 GCCATTGATAA-A-TTTTGTAGACAAGCCACCACTGATTTGCAGATATACT
* * *
15097045 GCCATTGATAAATTTTGTGGACAAGGCACCACTGATTTGCAGATATATT
1 GCCATTGATAAATTTTGTAGACAAGCCACCACTGATTTGCAGATATACT
* * *
15097094 ACCATTGATAAATTTTGTAGACAAGCCACCATTGATTTACAGATATACT
1 GCCATTGATAAATTTTGTAGACAAGCCACCACTGATTTGCAGATATACT
* *
15097143 GCCACTGATAAATTGTT-TAGACAAGCCA-CATCTGATTTGGAGATATACT
1 GCCATTGATAAATT-TTGTAGACAAGCCACCA-CTGATTTGCAGATATACT
15097192 GCCA
1 GCCA
15097196 CTGCTTCCAC
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
48 2 0.01
49 119 0.88
50 3 0.02
51 11 0.08
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (49 bp):
GCCATTGATAAATTTTGTAGACAAGCCACCACTGATTTGCAGATATACT
Found at i:15097948 original size:14 final size:15
Alignment explanation
Indices: 15097923--15097951 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
15097913 ATGATAGTAT
15097923 TAATACAATAATAAA
1 TAATACAATAATAAA
15097938 TAATA-AATAATAAA
1 TAATACAATAATAAA
15097952 ATTTAACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
TAATACAATAATAAA
Found at i:15103141 original size:22 final size:23
Alignment explanation
Indices: 15103116--15103158 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
15103106 CTATCTACAA
15103116 ATCAAATCTT-TAAGATTACATT
1 ATCAAATCTTCTAAGATTACATT
**
15103138 ATCATTTCTTCTAAGATTACA
1 ATCAAATCTTCTAAGATTACA
15103159 AGTTATCCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (23 bp):
ATCAAATCTTCTAAGATTACATT
Found at i:15105085 original size:33 final size:33
Alignment explanation
Indices: 15105048--15105111 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
15105038 TTTTAATTCC
*
15105048 AAAATACATAGTGACAAGAATCCGAAGATAAAA
1 AAAATACATAGTGACAAGAATCAGAAGATAAAA
* *
15105081 AAAATACATATTGACAAGAATTAGAAGATAA
1 AAAATACATAGTGACAAGAATCAGAAGATAA
15105112 TTGAAGCAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.58, C:0.09, G:0.14, T:0.19
Consensus pattern (33 bp):
AAAATACATAGTGACAAGAATCAGAAGATAAAA
Found at i:15105216 original size:19 final size:19
Alignment explanation
Indices: 15105192--15105229 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
15105182 AAATTTAATA
15105192 ACAAATTTGATTACAGTGG
1 ACAAATTTGATTACAGTGG
15105211 ACAAATTTGATTACAGTGG
1 ACAAATTTGATTACAGTGG
15105230 GTGATAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (19 bp):
ACAAATTTGATTACAGTGG
Found at i:15108632 original size:19 final size:19
Alignment explanation
Indices: 15108604--15108640 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
15108594 TTTTGGAGAA
15108604 TAAAAGTTT-GAGGGAAAG
1 TAAAAGTTTGGAGGGAAAG
15108622 TAAATAGTTTGGAGGGAAA
1 TAAA-AGTTTGGAGGGAAA
15108641 ATATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.24
Consensus pattern (19 bp):
TAAAAGTTTGGAGGGAAAG
Found at i:15108951 original size:9 final size:9
Alignment explanation
Indices: 15108937--15108973 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
15108927 TATAGTTTGA
15108937 TATTCGAAT
1 TATTCGAAT
15108946 TATTCGAAT
1 TATTCGAAT
*
15108955 TATTCGAGT
1 TATTCGAAT
15108964 TATTCGAAT
1 TATTCGAAT
15108973 T
1 T
15108974 CGAAACTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:15109041 original size:9 final size:9
Alignment explanation
Indices: 15109024--15109054 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
15109014 TTGAGTTGAT
15109024 TCGAATAAC
1 TCGAATAAC
*
15109033 TCGATTAAC
1 TCGAATAAC
15109042 TCGAATAAC
1 TCGAATAAC
15109051 TCGA
1 TCGA
15109055 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:15109316 original size:21 final size:21
Alignment explanation
Indices: 15109266--15109324 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
15109256 GTTCGCAAGG
*
15109266 TATGGTACGCGAACCATCACA
1 TATGGTACGCGAACCCTCACA
* * *
15109287 T-TAGATACGCGAACCCTTAGA
1 TAT-GGTACGCGAACCCTCACA
15109308 TATGGTACGCGAACCCT
1 TATGGTACGCGAACCCT
15109325 ACTTTTACAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (21 bp):
TATGGTACGCGAACCCTCACA
Found at i:15110104 original size:42 final size:43
Alignment explanation
Indices: 15110018--15110105 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 43
15110008 ATAATCTCAT
* *
15110018 GTTTTTGAAAAAATAATTTAAAAAAAGGAGAAGATAATATTGG
1 GTTTTTGAAAAAAGAATTTAAAAAAAGGAGAAGATAATAATGG
* *
15110061 GTTTTTG-AAAAAGAATTTAAAAAGAGGAGAAGTTAA-ACATGG
1 GTTTTTGAAAAAAGAATTTAAAAAAAGGAGAAGATAATA-ATGG
15110103 GTT
1 GTT
15110106 GTTGGATTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 1 0.03
42 32 0.80
43 7 0.17
ACGTcount: A:0.48, C:0.01, G:0.22, T:0.30
Consensus pattern (43 bp):
GTTTTTGAAAAAAGAATTTAAAAAAAGGAGAAGATAATAATGG
Found at i:15112660 original size:24 final size:24
Alignment explanation
Indices: 15112619--15112664 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
15112609 TTAGGGATTG
*
15112619 TAGGTTAAGTTTCCAGCTAGGTTCA
1 TAGGTTAAGTTGCCAGCT-GGTTCA
*
15112644 TAGG-TAAGTTGCGAGCTGGTT
1 TAGGTTAAGTTGCCAGCTGGTT
15112665 TCGTCAGGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 11 0.58
25 4 0.21
ACGTcount: A:0.22, C:0.13, G:0.30, T:0.35
Consensus pattern (24 bp):
TAGGTTAAGTTGCCAGCTGGTTCA
Found at i:15114954 original size:27 final size:27
Alignment explanation
Indices: 15114927--15115028 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
15114917 CAGTTCATTT
* *
15114927 AGAGTTTGCCACAAAGGTTATTCTTTT
1 AGAGTTCGCCACAAAGGTTATTCTTTC
* * *
15114954 AGAGTTCACCATAAAGCTTATTCTTTC
1 AGAGTTCGCCACAAAGGTTATTCTTTC
* * *
15114981 A-AGGTTCGCCATAAAGGCTATCCTTTC
1 AGA-GTTCGCCACAAAGGTTATTCTTTC
* *
15115008 AGATTTCGGCACAAAGGTTAT
1 AGAGTTCGCCACAAAGGTTAT
15115029 CAAAATGCCA
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.02
27 58 0.97
28 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (27 bp):
AGAGTTCGCCACAAAGGTTATTCTTTC
Found at i:15118807 original size:22 final size:21
Alignment explanation
Indices: 15118782--15118839 Score: 75
Period size: 19 Copynumber: 2.8 Consensus size: 21
15118772 AACCAAGTTT
15118782 GGGACTTGTATTGGTACCTAA
1 GGGACTTGTATTGGTACCTAA
* *
15118803 GGGGAATTGTATT-AT-CCTAA
1 -GGGACTTGTATTGGTACCTAA
15118823 GGGACTTGTATTGGTAC
1 GGGACTTGTATTGGTAC
15118840 GACGACCAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
19 11 0.37
20 6 0.20
21 2 0.07
22 11 0.37
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.34
Consensus pattern (21 bp):
GGGACTTGTATTGGTACCTAA
Found at i:15121355 original size:149 final size:150
Alignment explanation
Indices: 15121171--15121473 Score: 599
Period size: 149 Copynumber: 2.0 Consensus size: 150
15121161 TAATATAATA
15121171 TTTAAATAAATAGAATAAAATAGAATTAATTGAAACTATCCTCCATTAAGTGATAAGTAGCTCTT
1 TTTAAATAAATAGAATAAAATAGAATTAATTGAAACTATCCTCCATTAAGTGATAAGTAGCTCTT
15121236 ATCTGGCTAAATTAGGCTTATATGTAGTTTTTTTTTTTAATTCGCCTTTTAAGTCATTTTTTTAA
66 ATCTGGCTAAATTAGGCTTATATGTAGTTTTTTTTTTTAATTCGCCTTTTAAGTCATTTTTTTAA
15121301 AATTAGAGAAATAGGTTGTT
131 AATTAGAGAAATAGGTTGTT
15121321 TTTAAATAAATAG-ATAAAATAGAATTAATTGAAACTATCCTCCATTAAGTGATAAGTAGCTCTT
1 TTTAAATAAATAGAATAAAATAGAATTAATTGAAACTATCCTCCATTAAGTGATAAGTAGCTCTT
15121385 ATCTGGCTAAATTAGGCTTATATGTAGTTTTTTTTTTTAATTCGCCTTTTAAGTCATTTTTTTAA
66 ATCTGGCTAAATTAGGCTTATATGTAGTTTTTTTTTTTAATTCGCCTTTTAAGTCATTTTTTTAA
15121450 AATTAGAGAAATAGGTTGTT
131 AATTAGAGAAATAGGTTGTT
15121470 TTTA
1 TTTA
15121474 GAGAGTGTGT
Statistics
Matches: 153, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
149 140 0.92
150 13 0.08
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.43
Consensus pattern (150 bp):
TTTAAATAAATAGAATAAAATAGAATTAATTGAAACTATCCTCCATTAAGTGATAAGTAGCTCTT
ATCTGGCTAAATTAGGCTTATATGTAGTTTTTTTTTTTAATTCGCCTTTTAAGTCATTTTTTTAA
AATTAGAGAAATAGGTTGTT
Found at i:15125511 original size:43 final size:43
Alignment explanation
Indices: 15125464--15125598 Score: 121
Period size: 43 Copynumber: 3.2 Consensus size: 43
15125454 ATCTAGGATG
* * *
15125464 TTGGC-TCGATTTGATATTTACGTAAAAGACCATGTCTGGGACA
1 TTGGCATCGATAT-ATAATTACGTAAAAGACCATGTCTGAGACA
** *
15125507 TTGGCATCG-TATATAATTACGTGTAAGACCCTGTCTGAGACA
1 TTGGCATCGATATATAATTACGTAAAAGACCATGTCTGAGACA
* * * ** * * *
15125549 ATGGCATCGATATGTAATTACATGTAAGACCACGTCCGAGACG
1 TTGGCATCGATATATAATTACGTAAAAGACCATGTCTGAGACA
15125592 TTGGCAT
1 TTGGCAT
15125599 TGTACAAGCT
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 33 0.43
43 40 0.53
44 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
TTGGCATCGATATATAATTACGTAAAAGACCATGTCTGAGACA
Found at i:15125536 original size:42 final size:43
Alignment explanation
Indices: 15125489--15125598 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 43
15125479 ATTTACGTAA
* *
15125489 AAGACCATGTCTGGGACATTGGCATCG-TATATAATTACGTGT
1 AAGACCATGTCTGAGACATTGGCATCGATATATAATTACATGT
* * *
15125531 AAGACCCTGTCTGAGACAATGGCATCGATATGTAATTACATGT
1 AAGACCATGTCTGAGACATTGGCATCGATATATAATTACATGT
* * *
15125574 AAGACCACGTCCGAGACGTTGGCAT
1 AAGACCATGTCTGAGACATTGGCAT
15125599 TGTACAAGCT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 24 0.42
43 33 0.58
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (43 bp):
AAGACCATGTCTGAGACATTGGCATCGATATATAATTACATGT
Found at i:15127557 original size:43 final size:43
Alignment explanation
Indices: 15127510--15127644 Score: 121
Period size: 43 Copynumber: 3.2 Consensus size: 43
15127500 ATCTAGGATG
* * *
15127510 TTGGC-TCGATTTGATATTTACGTAAAAGACCATGTCTGGGACA
1 TTGGCATCGATAT-ATAATTACGTAAAAGACCATGTCTGAGACA
** *
15127553 TTGGCATCG-TATATAATTACGTGTAAGACCCTGTCTGAGACA
1 TTGGCATCGATATATAATTACGTAAAAGACCATGTCTGAGACA
* * * ** * * *
15127595 ATGGCATCGATATGTAATTACATGTAAGACCACGTCCGAGACG
1 TTGGCATCGATATATAATTACGTAAAAGACCATGTCTGAGACA
15127638 TTGGCAT
1 TTGGCAT
15127645 TGTACAAGCT
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 33 0.43
43 40 0.53
44 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
TTGGCATCGATATATAATTACGTAAAAGACCATGTCTGAGACA
Found at i:15127582 original size:42 final size:43
Alignment explanation
Indices: 15127535--15127644 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 43
15127525 ATTTACGTAA
* *
15127535 AAGACCATGTCTGGGACATTGGCATCG-TATATAATTACGTGT
1 AAGACCATGTCTGAGACATTGGCATCGATATATAATTACATGT
* * *
15127577 AAGACCCTGTCTGAGACAATGGCATCGATATGTAATTACATGT
1 AAGACCATGTCTGAGACATTGGCATCGATATATAATTACATGT
* * *
15127620 AAGACCACGTCCGAGACGTTGGCAT
1 AAGACCATGTCTGAGACATTGGCAT
15127645 TGTACAAGCT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 24 0.42
43 33 0.58
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (43 bp):
AAGACCATGTCTGAGACATTGGCATCGATATATAATTACATGT
Found at i:15133230 original size:24 final size:24
Alignment explanation
Indices: 15133198--15133254 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
15133188 ATTTGCAAAC
* *
15133198 AAGCCACCATATAGGTTGTTGACG
1 AAGCCACCATATAAGTTGTAGACG
* *
15133222 AAGCCACCATGTAAGTTGTAGATG
1 AAGCCACCATATAAGTTGTAGACG
*
15133246 AAACCACCA
1 AAGCCACCA
15133255 ATTCTTTCTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (24 bp):
AAGCCACCATATAAGTTGTAGACG
Found at i:15133437 original size:38 final size:37
Alignment explanation
Indices: 15133354--15133442 Score: 115
Period size: 38 Copynumber: 2.4 Consensus size: 37
15133344 TGTCACATTG
* * *
15133354 GGCATGTTGAACATGCGAATCGGATAATATCATGTAA
1 GGCATGTTTAACATACAAATCGGATAATATCATGTAA
*
15133391 GGCATGTTTTAACATACAAATCGGATAATATCATGTAG
1 GGCATG-TTTAACATACAAATCGGATAATATCATGTAA
**
15133429 GGTGTGTTTAACAT
1 GGCATGTTTAACAT
15133443 GCAATCAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 14 0.31
38 31 0.69
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (37 bp):
GGCATGTTTAACATACAAATCGGATAATATCATGTAA
Found at i:15139287 original size:26 final size:26
Alignment explanation
Indices: 15139254--15139317 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
15139244 TGGTCCATTT
*
15139254 TTTTAATTTTTTAT-TTAATCTTTATA
1 TTTTAATTTTTTATCATAAT-TTTATA
15139280 TTTTAATTTTTTATCATAATTTTATA
1 TTTTAATTTTTTATCATAATTTTATA
*
15139306 TTTTTATTTTTT
1 TTTTAATTTTTT
15139318 TAATGTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 31 0.89
27 4 0.11
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (26 bp):
TTTTAATTTTTTATCATAATTTTATA
Found at i:15139314 original size:13 final size:13
Alignment explanation
Indices: 15139254--15139315 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
15139244 TGGTCCATTT
*
15139254 TTTTAATTTTTTA
1 TTTTAATTTTATA
15139267 -TTTAATCTTTATA
1 TTTTAAT-TTTATA
*
15139280 TTTTAATTTTTTA
1 TTTTAATTTTATA
**
15139293 TCATAATTTTATA
1 TTTTAATTTTATA
*
15139306 TTTTTATTTT
1 TTTTAATTTT
15139316 TTTAATGTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 6 0.15
13 27 0.69
14 6 0.15
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTAATTTTATA
Found at i:15139411 original size:85 final size:86
Alignment explanation
Indices: 15139284--15139473 Score: 343
Period size: 85 Copynumber: 2.2 Consensus size: 86
15139274 TTTATATTTT
15139284 AATTTTTTATCAT-AA-TTT-TATATTTTTATTTTTTTAATGTTATTAGTTAGTCCAAATAATTA
1 AATTTTTTA-CATAAATTTTATATATTTTTATTTTTTTAATGTTATTAGTTAGTCCAAATAATTA
15139346 ATATTATTAACTATTTTGACTA
65 ATATTATTAACTATTTTGACTA
15139368 AATTTTTTACATAAATTTTATATATTTTTA-TTTTTTAATGTTATTAGTTAGTCCAAATAATTAA
1 AATTTTTTACATAAATTTTATATATTTTTATTTTTTTAATGTTATTAGTTAGTCCAAATAATTAA
15139432 TATTATTAACTATTTTGACTA
66 TATTATTAACTATTTTGACTA
15139453 AATTTTTTACATAAATTTTAT
1 AATTTTTTACATAAATTTTAT
15139474 TTTTTAAAAA
Statistics
Matches: 103, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
83 3 0.03
84 11 0.11
85 79 0.77
86 10 0.10
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (86 bp):
AATTTTTTACATAAATTTTATATATTTTTATTTTTTTAATGTTATTAGTTAGTCCAAATAATTAA
TATTATTAACTATTTTGACTA
Found at i:15142200 original size:25 final size:25
Alignment explanation
Indices: 15142166--15142214 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
15142156 TACATTGTGG
*
15142166 ATCAAGGATAATCGCCAAGTAAACA
1 ATCAAAGATAATCGCCAAGTAAACA
15142191 ATCAAAGATAATCGCCAAGTAAAC
1 ATCAAAGATAATCGCCAAGTAAAC
15142215 TAGCATGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.49, C:0.20, G:0.14, T:0.16
Consensus pattern (25 bp):
ATCAAAGATAATCGCCAAGTAAACA
Found at i:15146758 original size:88 final size:88
Alignment explanation
Indices: 15146540--15146800 Score: 373
Period size: 86 Copynumber: 3.0 Consensus size: 88
15146530 ATTAACGTTC
* * ** * *
15146540 TTTTTAGCTTATTGTTTTAGCTCCTTAGCAAACTTTCTATAAGAAAAATAACTTTTGAAATAAAA
1 TTTTTACCTTATTGTTTTAACTTATTAGCAAACTTTCTATGAGAAAAATAACTTTTCAAATAAAA
*
15146605 CTATTAATTTGAAAATTTA--TA
66 CTATTAATTTGAAATTTTATTTA
* * * *
15146626 TTTTTACCTTATTGTTTTAACTTATTAGCAAATTTTCTATGAGAAAAACAACTTTTTAACTAAAA
1 TTTTTACCTTATTGTTTTAACTTATTAGCAAACTTTCTATGAGAAAAATAACTTTTCAAATAAAA
*
15146691 CTATTAATTTGAAATTTTATTTT
66 CTATTAATTTGAAATTTTATTTA
* *
15146714 TTTTTACCTTACTGTTTTAACTTATTAGCAAACTTTCTATGAGAAAAAATAAGTTTTCAAATAAA
1 TTTTTACCTTATTGTTTTAACTTATTAGCAAACTTTCTATGAG-AAAAATAACTTTTCAAATAAA
15146779 ACTATTAATTTGAAATTTTATT
65 ACTATTAATTTGAAATTTTATT
15146801 GGAGATGATG
Statistics
Matches: 155, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
86 74 0.48
88 42 0.27
89 39 0.25
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (88 bp):
TTTTTACCTTATTGTTTTAACTTATTAGCAAACTTTCTATGAGAAAAATAACTTTTCAAATAAAA
CTATTAATTTGAAATTTTATTTA
Found at i:15147538 original size:25 final size:24
Alignment explanation
Indices: 15147505--15147553 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
15147495 ATTCCAGATT
*
15147505 TTATTTTATTTCATATTAATATAA
1 TTATTTTATTTAATATTAATATAA
15147529 TTATATTTATTTAATATTAATATAA
1 TTAT-TTTATTTAATATTAATATAA
15147554 AATTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:15147617 original size:23 final size:22
Alignment explanation
Indices: 15147569--15147646 Score: 81
Period size: 23 Copynumber: 3.5 Consensus size: 22
15147559 TAATTTGTTA
*
15147569 TATATTTTTTAAACAT-TCATTTT
1 TATATTTTTTAAA-ATAT-ATTAT
15147592 TATATATTTTTAAAATATATTAT
1 TATAT-TTTTTAAAATATATTAT
*
15147615 TATATTCTTTGAAAATAT-TTA-
1 TATATT-TTTTAAAATATATTAT
15147636 TATATTTTTTA
1 TATATTTTTTA
15147647 GAATTAGGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
20 4 0.08
21 6 0.12
22 4 0.08
23 26 0.53
24 9 0.18
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (22 bp):
TATATTTTTTAAAATATATTAT
Found at i:15147620 original size:21 final size:20
Alignment explanation
Indices: 15147590--15147644 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 20
15147580 AACATTCATT
15147590 TTTATATATTTTT-AAAATA
1 TTTATATATTTTTGAAAATA
15147609 TATTATTATATTCTTTGAAAATA
1 T-TTA-TATATT-TTTGAAAATA
15147632 TTTATATATTTTT
1 TTTATATATTTTT
15147645 TAGAATTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.03
20 6 0.19
21 12 0.38
22 6 0.19
23 7 0.22
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTATATATTTTTGAAAATA
Found at i:15149635 original size:55 final size:55
Alignment explanation
Indices: 15149574--15149709 Score: 204
Period size: 53 Copynumber: 2.5 Consensus size: 55
15149564 TTCCATTATA
* * *
15149574 CAAGTACAAAAATAAATCAAAATTTTTTTTGTGCTGGCCTGTCAATGGCCACCAC
1 CAAGTACAAAAAAAAATCAAAATTTTTTTTGTGCTGGCCTATCAATGACCACCAC
* *
15149629 TAAGTACAAAAAAAAATC-AAA-TTTTTTTGTGCTGGCTTATCAATGACCACCAC
1 CAAGTACAAAAAAAAATCAAAATTTTTTTTGTGCTGGCCTATCAATGACCACCAC
*
15149682 CAAGTACAAAAAAAAATTAAAATTTTTT
1 CAAGTACAAAAAAAAATCAAAATTTTTT
15149710 GGGACTAGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
53 45 0.62
54 6 0.08
55 21 0.29
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (55 bp):
CAAGTACAAAAAAAAATCAAAATTTTTTTTGTGCTGGCCTATCAATGACCACCAC
Found at i:15149726 original size:54 final size:53
Alignment explanation
Indices: 15149574--15149727 Score: 200
Period size: 53 Copynumber: 2.8 Consensus size: 53
15149564 TTCCATTATA
* * *
15149574 CAAGTACAAAAATAAATCAAAATTTTTTTTGTGCTGGCCTGTCAATGGCCACCAC
1 CAAGTACAAAAAAAAATCAAAA--TTTTTTGTGCTGGCTTGTCAATGACCACCAC
* * *
15149629 TAAGTACAAAAAAAAATCAAATTTTTTTGTGCTGGCTTATCAATGACCACCAC
1 CAAGTACAAAAAAAAATCAAAATTTTTTGTGCTGGCTTGTCAATGACCACCAC
* * *
15149682 CAAGTACAAAAAAAAATTAAAATTTTTTGGGACTAGCTTGTCAATG
1 CAAGTACAAAAAAAAATCAAAATTTTTTGTG-CTGGCTTGTCAATG
15149728 GTCGGCGCCA
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 55 0.64
54 12 0.14
55 19 0.22
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (53 bp):
CAAGTACAAAAAAAAATCAAAATTTTTTGTGCTGGCTTGTCAATGACCACCAC
Found at i:15151759 original size:31 final size:31
Alignment explanation
Indices: 15151713--15151792 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
15151703 ATCGCGACAA
* *
15151713 TTTTAAATTTTTTCTGTTAATTTTTAC-TTTAT
1 TTTTAAA-TTATTCTGTTAATATTT-CTTTTAT
*
15151745 TTTTAAATTATTCTGTAAATATTTCTTTTAT
1 TTTTAAATTATTCTGTTAATATTTCTTTTAT
** *
15151776 AATGAAATTATTCTGTT
1 TTTTAAATTATTCTGTT
15151793 TTTTAATATT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
30 1 0.03
31 32 0.80
32 7 0.17
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (31 bp):
TTTTAAATTATTCTGTTAATATTTCTTTTAT
Found at i:15152799 original size:51 final size:53
Alignment explanation
Indices: 15152734--15152871 Score: 172
Period size: 55 Copynumber: 2.6 Consensus size: 53
15152724 TAATACTGAG
* * * *
15152734 TCTGGTGCCGGCCATTGATAGGCCAGTACCAA-TTTTTTT-TAAAACGCGTAC
1 TCTGGTGCTGGCCATTGACAGGCCAGCACAAATTTTTTTTCTAAAACGCGTAC
* *
15152785 TCTGGTGCTAGCCATTGACAGGCCAGCACAAATTTTTTTTTTCTAAAACTCGTAC
1 TCTGGTGCTGGCCATTGACAGGCCAGCACAAA--TTTTTTTTCTAAAACGCGTAC
* *
15152840 TTTGGTGCTGGCCATTGACAGGCGAGCACAAA
1 TCTGGTGCTGGCCATTGACAGGCCAGCACAAA
15152872 AAAATTTTGA
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
51 27 0.36
54 7 0.09
55 40 0.54
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (53 bp):
TCTGGTGCTGGCCATTGACAGGCCAGCACAAATTTTTTTTCTAAAACGCGTAC
Found at i:15152900 original size:55 final size:55
Alignment explanation
Indices: 15152836--15153030 Score: 257
Period size: 56 Copynumber: 3.5 Consensus size: 55
15152826 TCTAAAACTC
* *
15152836 GTACTTTGGTGCTGGCCATTGACAGGCGAGCACAAAAAAATTTTGATTTTTTTTTT
1 GTAC-TTGGTGGTGGCCATTGACAGGCCAGCACAAAAAAATTTTGATTTTTTTTTT
* * **** * *
15152892 GTACTTGGTGGTGGCCATTAACAGGCCAACAACAAAAAAAAAAAGATTATTTTTTG
1 GTACTTGGTGGTGGCCATTGACAGGCCAGC-ACAAAAAAATTTTGATTTTTTTTTT
* *
15152948 GTACTTGGTGGTGGCCATTGATAGGCCAGCACAAAAAAATTTTGA-TTTATTTTT
1 GTACTTGGTGGTGGCCATTGACAGGCCAGCACAAAAAAATTTTGATTTTTTTTTT
15153002 GTACTTGGTGGTGGCCATTGACAGGCCAG
1 GTACTTGGTGGTGGCCATTGACAGGCCAG
15153031 TACTAAATTT
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 34 0.29
55 33 0.28
56 50 0.43
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (55 bp):
GTACTTGGTGGTGGCCATTGACAGGCCAGCACAAAAAAATTTTGATTTTTTTTTT
Found at i:15153331 original size:91 final size:91
Alignment explanation
Indices: 15153088--15153305 Score: 427
Period size: 91 Copynumber: 2.4 Consensus size: 91
15153078 CGATTTAAAA
*
15153088 AAAATACGAGTTGGTGGTGGCCATTGACAGGCCAAAACCAAAAAAATTAATTTTTTAAAGTCTGA
1 AAAATACAAGTTGGTGGTGGCCATTGACAGGCCAAAACCAAAAAAATTAATTTTTTAAAGTCTGA
15153153 CACAATTATCAGGCAATCATGGGTCT
66 CACAATTATCAGGCAATCATGGGTCT
15153179 AAAATACAAGTTGGTGGTGGCCATTGACAGGCCAAAACCAAAAAAATTAATTTTTTAAAGTCTGA
1 AAAATACAAGTTGGTGGTGGCCATTGACAGGCCAAAACCAAAAAAATTAATTTTTTAAAGTCTGA
15153244 CACAATTATCAGGCAATCATGGGTCT
66 CACAATTATCAGGCAATCATGGGTCT
15153270 AAAATACAAGTTGGTGGTGGCCATTGACAGGCCAAA
1 AAAATACAAGTTGGTGGTGGCCATTGACAGGCCAAA
15153306 CCCCATTCTA
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 126 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (91 bp):
AAAATACAAGTTGGTGGTGGCCATTGACAGGCCAAAACCAAAAAAATTAATTTTTTAAAGTCTGA
CACAATTATCAGGCAATCATGGGTCT
Found at i:15155971 original size:6 final size:7
Alignment explanation
Indices: 15155946--15155970 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15155936 TAAACAAGTT
15155946 AAAAATA
1 AAAAATA
15155953 AAAAATA
1 AAAAATA
15155960 AAAAATA
1 AAAAATA
15155967 AAAA
1 AAAA
15155971 TCTCTTTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:15167966 original size:104 final size:104
Alignment explanation
Indices: 15167786--15168323 Score: 611
Period size: 104 Copynumber: 5.2 Consensus size: 104
15167776 TCTGACCTTG
* * * * *
15167786 CAGTTGATGTTATTAAGGTTAGTTGATCTAAGATCACAGCCT-TCAATTATTTTAATTCGCTGAT
1 CAGTTGATGTTATTAAGGCTAGTTGATTTAAGATCGCAGCCTCT-AATTATTTGAGTTCGCTGAT
*
15167850 TTAAGATCGCAACTCCTAACGGCTCGATGACCTACATTCA
65 TTAAGATCGCAACTCCTAACAGCTCGATGACCTACATTCA
* * * * *
15167890 CAGTTGATATTATCAAGGCTAGTTGATTTAAAATCGCAACCTCTAATTATTTGAGTTCGTTGATT
1 CAGTTGATGTTATTAAGGCTAGTTGATTTAAGATCGCAGCCTCTAATTATTTGAGTTCGCTGATT
*
15167955 TAAGATCGCAACTCCTAACAGCTCGATGACCTACGTTCA
66 TAAGATCGCAACTCCTAACAGCTCGATGACCTACATTCA
* * * * * *
15167994 CAGCTAATGTTATTAAGGCTAGCTGATTTAAGATCCCAGCTTCTAATTATTTGAGTTTGCTGATT
1 CAGTTGATGTTATTAAGGCTAGTTGATTTAAGATCGCAGCCTCTAATTATTTGAGTTCGCTGATT
* * * * *
15168059 TAAGATTGCAACTTCTAACAGCTCGCTAACCTCCATTCA
66 TAAGATCGCAACTCCTAACAGCTCGATGACCTACATTCA
* * * * * * *
15168098 TAGTTAATGTTATTAAGGCTAGCTGATTTAAGATCGCAGCCTCCAATTATTTAAGTTTGCTAATT
1 CAGTTGATGTTATTAAGGCTAGTTGATTTAAGATCGCAGCCTCTAATTATTTGAGTTCGCTGATT
* *
15168163 TAAGATCGCAACTCCTAACAGCTC-ACTGACCTAAATTTA
66 TAAGATCGCAACTCCTAACAGCTCGA-TGACCTACATTCA
* * * **
15168202 CA-TATGATGTTATTAAGGTTAGCTT-ATTTAAGATCGCAACCTCCAATTATTTGAGTTCATTGA
1 CAGT-TGATGTTATTAAGGCTAG-TTGATTTAAGATCGCAGCCTCTAATTATTTGAGTTCGCTGA
* *
15168265 TTTAAGATCGCAACTTCTAACA-ATCTGCA-GACCTACATTCA
64 TTTAAGATCGCAACTCCTAACAGCTC-G-ATGACCTACATTCA
* *
15168306 CAGCTGATATTATTAAGG
1 CAGTTGATGTTATTAAGG
15168324 TTTGCAATTT
Statistics
Matches: 367, Mismatches: 59, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
103 3 0.01
104 361 0.98
105 2 0.01
106 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (104 bp):
CAGTTGATGTTATTAAGGCTAGTTGATTTAAGATCGCAGCCTCTAATTATTTGAGTTCGCTGATT
TAAGATCGCAACTCCTAACAGCTCGATGACCTACATTCA
Found at i:15171321 original size:29 final size:28
Alignment explanation
Indices: 15171241--15171339 Score: 78
Period size: 29 Copynumber: 3.5 Consensus size: 28
15171231 TAATTAATTT
* *
15171241 TTAAAATT-TTGAAAAAAAATAAAAAAAA
1 TTAAAATTATTG-AAAAATATAAAAATAA
* ** * *
15171269 TCAAAATTATTTTTAAAATTTAAAAATCA
1 TTAAAATTA-TTGAAAAATATAAAAATAA
15171298 TTAAAATTATTGAAAAAGTATAAAAAATAA
1 TTAAAATTATTGAAAAA-TAT-AAAAATAA
15171328 TT-AAA-TATTGAA
1 TTAAAATTATTGAA
15171340 TGGCCTAAAT
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
28 20 0.36
29 24 0.44
30 11 0.20
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (28 bp):
TTAAAATTATTGAAAAATATAAAAATAA
Found at i:15173417 original size:13 final size:13
Alignment explanation
Indices: 15173399--15173430 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
15173389 AACATGAATG
*
15173399 TATTAATGACAAA
1 TATTAATGAAAAA
15173412 TATTAATGAAAAA
1 TATTAATGAAAAA
15173425 TATTAA
1 TATTAA
15173431 AGAGGCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.34
Consensus pattern (13 bp):
TATTAATGAAAAA
Found at i:15187059 original size:20 final size:20
Alignment explanation
Indices: 15187034--15187072 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15187024 TTCGCTAAGT
*
15187034 TTTGCAAACTAACTTTAGGG
1 TTTGCAAACTAACTCTAGGG
15187054 TTTGCAAACTAACTCTAGG
1 TTTGCAAACTAACTCTAGG
15187073 TCCGTGGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (20 bp):
TTTGCAAACTAACTCTAGGG
Found at i:15189330 original size:21 final size:21
Alignment explanation
Indices: 15189291--15189331 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
15189281 GAAATTGTTA
*
15189291 AAATTAAGTTGAAAGAAAAGG
1 AAATTAAGTAGAAAGAAAAGG
*
15189312 AAATTAAGATAGAAAAAAAA
1 AAATTAAG-TAGAAAGAAAA
15189332 TAATATATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (21 bp):
AAATTAAGTAGAAAGAAAAGG
Found at i:15194494 original size:18 final size:19
Alignment explanation
Indices: 15194461--15194499 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15194451 CGATGGTTAC
* *
15194461 ATTATAGTATTATATATAA
1 ATTATAGTACTATATAAAA
15194480 ATTATA-TACTATATAAAA
1 ATTATAGTACTATATAAAA
15194498 AT
1 AT
15194500 AAATATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
ATTATAGTACTATATAAAA
Found at i:15204709 original size:115 final size:113
Alignment explanation
Indices: 15204468--15204710 Score: 265
Period size: 115 Copynumber: 2.1 Consensus size: 113
15204458 AATTGAGTTG
* * **
15204468 ATAAGTAAAAATATTAGATTTTGACAATGAAGTCTCTTGGCTTGGTCTAATAATTTTTATTCTAT
1 ATAAGT-AAAA-ATTAGAATCTGACAATGAAGTCTCTTAACTTGGTCTAATAATTTTTATTCTAT
* * *
15204533 TAATATTACAATGAATTTTGTAATAAGTGAAATTTCATAAATGTGTATTC
64 TAATATTACAATGAATTTTATAATAAGTGAAATTGCAAAAATGTGTATTC
* * * *
15204583 ATAAATATAAAAATTAGAATCTGACAATGAAGTCTCTTAATTTGGTGTAATAATTTTTATTTTAT
1 AT-AA-GTAAAAATTAGAATCTGACAATGAAGTCTCTTAACTTGGTCTAATAATTTTTATTCTAT
* ** *
15204648 TACTATTGTAATGAATTTTATAATGAA-TTAAATTGCAAAAATATGTGTATTTC
64 TAATATTACAATGAATTTTATAAT-AAGTGAAATTGC-AAAA-ATGTGTA-TTC
15204701 -TAAGTAAAAA
1 ATAAGTAAAAA
15204711 AAATGAAATT
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
115 81 0.76
116 13 0.12
117 9 0.08
118 3 0.03
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42
Consensus pattern (113 bp):
ATAAGTAAAAATTAGAATCTGACAATGAAGTCTCTTAACTTGGTCTAATAATTTTTATTCTATTA
ATATTACAATGAATTTTATAATAAGTGAAATTGCAAAAATGTGTATTC
Found at i:15208624 original size:29 final size:28
Alignment explanation
Indices: 15208592--15208646 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
15208582 TGGAGAAGCA
*
15208592 AAAGATAATAGAAAATAAAGAGAAAAAGT
1 AAAGATAAAAGAAAATAAA-AGAAAAAGT
* *
15208621 AAAGTTAAAAGAACATAAAAGAAAAA
1 AAAGATAAAAGAAAATAAAAGAAAAA
15208647 AAAATTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.71, C:0.02, G:0.15, T:0.13
Consensus pattern (28 bp):
AAAGATAAAAGAAAATAAAAGAAAAAGT
Found at i:15212560 original size:27 final size:27
Alignment explanation
Indices: 15212514--15212585 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
15212504 TAGTGGAGGG
* *
15212514 ACTGCCACAGGCAGCACCAATGGTGCA
1 ACTGCCACAGGCGGCACCAAAGGTGCA
* * * *
15212541 AGTGGCAGAGGCGGCACCAAAGGTGCC
1 ACTGCCACAGGCGGCACCAAAGGTGCA
15212568 ACTGCCACAGGCGGCACC
1 ACTGCCACAGGCGGCACC
15212586 CCCCATTTAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.26, C:0.33, G:0.32, T:0.08
Consensus pattern (27 bp):
ACTGCCACAGGCGGCACCAAAGGTGCA
Found at i:15212817 original size:10 final size:10
Alignment explanation
Indices: 15212802--15212902 Score: 202
Period size: 10 Copynumber: 10.1 Consensus size: 10
15212792 ACTTTATTTA
15212802 ATAAAATAAT
1 ATAAAATAAT
15212812 ATAAAATAAT
1 ATAAAATAAT
15212822 ATAAAATAAT
1 ATAAAATAAT
15212832 ATAAAATAAT
1 ATAAAATAAT
15212842 ATAAAATAAT
1 ATAAAATAAT
15212852 ATAAAATAAT
1 ATAAAATAAT
15212862 ATAAAATAAT
1 ATAAAATAAT
15212872 ATAAAATAAT
1 ATAAAATAAT
15212882 ATAAAATAAT
1 ATAAAATAAT
15212892 ATAAAATAAT
1 ATAAAATAAT
15212902 A
1 A
15212903 AAATACGAAA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 91 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
ATAAAATAAT
Found at i:15213286 original size:160 final size:162
Alignment explanation
Indices: 15213096--15213467 Score: 561
Period size: 160 Copynumber: 2.3 Consensus size: 162
15213086 ACATTTCTTA
* * * ** * *
15213096 TTTTCTGATTTTATTACTGTAAAAAAATATACTATTTTCGTATTTTATTATTTTATGTTATTTTA
1 TTTTCAGATTTTATTACTTTCAGTAAATATACTATTTTCGTTTTTTATTATTTTATATTATTTTA
* *
15213161 GTACATAATATTTGAAATATATTATTTTA-GTGTTTTTTTATATAAATTTAGTGAAAAA-CCCTA
66 GTACATAACATTTGAAATATATTATTTTAGGTGTTTTTTTATATAAATTTAGTAAAAAATCCCTA
*
15213224 TTTTGGCCTTTTGTCCGTATTTTTCTTTTTTCT
131 TTTTGGCCCTTTGTCCGTATTTTTCTTTTTT-T
* *
15213257 TTTT-GGATTTTATTACTTTCAGTAAATATACTATTTTCATTTTTTATTATTTTATATTATTTTA
1 TTTTCAGATTTTATTACTTTCAGTAAATATACTATTTTCGTTTTTTATTATTTTATATTATTTTA
* * *
15213321 GTACATAACGTTTGAAATGTATTATTTTAGTGTGTTTTTTTATATAAATTTAGTAAAAAATCCTT
66 GTACATAACATTTGAAATATATTATTTTAG-GTGTTTTTTTATATAAATTTAGTAAAAAATCCCT
*
15213386 ATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTT
130 ATTTTGGCCCTTTGTCCGTATTTTTCTTTTTTT
15213419 TTTTCAGATTTTATTACTTTCAGTAAATATACTATTTTCGTTTTTTATT
1 TTTTCAGATTTTATTACTTTCAGTAAATATACTATTTTCGTTTTTTATT
15213468 TCTTTTCGTA
Statistics
Matches: 190, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
160 78 0.41
161 4 0.02
162 33 0.17
163 75 0.39
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.57
Consensus pattern (162 bp):
TTTTCAGATTTTATTACTTTCAGTAAATATACTATTTTCGTTTTTTATTATTTTATATTATTTTA
GTACATAACATTTGAAATATATTATTTTAGGTGTTTTTTTATATAAATTTAGTAAAAAATCCCTA
TTTTGGCCCTTTGTCCGTATTTTTCTTTTTTT
Found at i:15213475 original size:17 final size:17
Alignment explanation
Indices: 15213453--15213485 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15213443 AAATATACTA
*
15213453 TTTTCGTTTTTTATTTC
1 TTTTCGTATTTTATTTC
15213470 TTTTCGTATTTTATTT
1 TTTTCGTATTTTATTT
15213486 TTTCATAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.76
Consensus pattern (17 bp):
TTTTCGTATTTTATTTC
Found at i:15214765 original size:21 final size:21
Alignment explanation
Indices: 15214724--15214778 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
15214714 CTCTAAATCT
15214724 ATAATA-AA-TAA-AATATAA
1 ATAATATAATTAAGAATATAA
*
15214742 ATAATATAATTAAGAATGTAA
1 ATAATATAATTAAGAATATAA
15214763 AT-ATCATAATTTAAGA
1 ATAAT-ATAA-TTAAGA
15214779 CGAGAAACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 6 0.19
19 2 0.06
20 5 0.16
21 12 0.39
22 6 0.19
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (21 bp):
ATAATATAATTAAGAATATAA
Found at i:15216559 original size:14 final size:15
Alignment explanation
Indices: 15216540--15216568 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
15216530 TTACTGAGGG
15216540 GAGAGGTTTT-TTTT
1 GAGAGGTTTTGTTTT
15216554 GAGAGGTTTTGTTTT
1 GAGAGGTTTTGTTTT
15216569 TTTTAGGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.14, C:0.00, G:0.31, T:0.55
Consensus pattern (15 bp):
GAGAGGTTTTGTTTT
Found at i:15217228 original size:20 final size:20
Alignment explanation
Indices: 15217204--15217259 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
15217194 TTTTTTACGC
15217204 ATACATATATTTTTTAATAT
1 ATACATATATTTTTTAATAT
* * *
15217224 GTACATATATTCTATAATAT
1 ATACATATATTTTTTAATAT
* *
15217244 ATATACATATTTTTTA
1 ATACATATATTTTTTA
15217260 TTTTATAAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (20 bp):
ATACATATATTTTTTAATAT
Found at i:15217371 original size:75 final size:73
Alignment explanation
Indices: 15217236--15217376 Score: 180
Period size: 75 Copynumber: 1.9 Consensus size: 73
15217226 ACATATATTC
*
15217236 TATAATATATATACATATTTTTTATTTTATAAAAAAACTATCTACGTATATACATATATTTTTAT
1 TATAATATATATACATATTTTTTATTTTATAAAAAAACTATCTAC-TACATACATATATTTTTAT
15217301 AACTATGCA
65 AACTATGCA
* *
15217310 TATATATATATATACATATATTTTTATTTTCATAACTTAAAA-T-TTTA-TACATACATATATTT
1 TATA-ATATATATACATAT-TTTTTATTTT-ATAA--AAAAACTATCTACTACATACATATATTT
15217372 TTATA
61 TTATA
15217377 TATTTCATAT
Statistics
Matches: 59, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
74 4 0.07
75 33 0.56
76 10 0.17
77 7 0.12
78 1 0.02
79 4 0.07
ACGTcount: A:0.41, C:0.09, G:0.01, T:0.49
Consensus pattern (73 bp):
TATAATATATATACATATTTTTTATTTTATAAAAAAACTATCTACTACATACATATATTTTTATA
ACTATGCA
Found at i:15217387 original size:19 final size:19
Alignment explanation
Indices: 15217363--15217400 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
15217353 TTTATACATA
*
15217363 CATATATTTTTATATATTT
1 CATATAGTTTTATATATTT
*
15217382 CATATAGTTTTATTTATTT
1 CATATAGTTTTATATATTT
15217401 TATTTATCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (19 bp):
CATATAGTTTTATATATTT
Found at i:15226199 original size:5 final size:5
Alignment explanation
Indices: 15226189--15226216 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
15226179 ATATATGGTA
15226189 TATGG TATGG TATGG TATGG TATGG TAT
1 TATGG TATGG TATGG TATGG TATGG TAT
15226217 ATAGTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (5 bp):
TATGG
Found at i:15227077 original size:2 final size:2
Alignment explanation
Indices: 15227070--15227096 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15227060 TACTACTGTG
15227070 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
15227097 TCATGCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15231206 original size:29 final size:29
Alignment explanation
Indices: 15231164--15231228 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
15231154 CATGGCCTAC
*
15231164 CACATGGTCTGACACACGGCCATGTGACT
1 CACATGGTCTGACACACGACCATGTGACT
15231193 CACATGGTCTGACACACGACCATGTGACT
1 CACATGGTCTGACACACGACCATGTGACT
*
15231222 CATATGG
1 CACATGG
15231229 CCTACCACAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (29 bp):
CACATGGTCTGACACACGACCATGTGACT
Found at i:15231237 original size:29 final size:29
Alignment explanation
Indices: 15231164--15231239 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
15231154 CATGGCCTAC
* *
15231164 CACATGGTCTGACACACGGCCATGTGACT
1 CACATGGCCTGACACACGACCATGTGACT
*
15231193 CACATGGTCTGACACACGACCATGTGACT
1 CACATGGCCTGACACACGACCATGTGACT
*
15231222 CATATGGCCT-ACCACACG
1 CACATGGCCTGA-CACACG
15231240 GACACGGCAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 1 0.02
29 42 0.98
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.20
Consensus pattern (29 bp):
CACATGGCCTGACACACGACCATGTGACT
Done.