Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 48 of 141
Found at i:15240390 original size:17 final size:18
Alignment explanation
Indices: 15240348--15240390 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
15240338 ATTCATTTGC
*
15240348 TTATTTTTCTTTATTTAT
1 TTATTTTTCGTTATTTAT
*
15240366 TTACTTTT-GTTATTTAT
1 TTATTTTTCGTTATTTAT
15240383 TTATTTTT
1 TTATTTTT
15240391 ATTTCGCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (18 bp):
TTATTTTTCGTTATTTAT
Found at i:15259078 original size:28 final size:28
Alignment explanation
Indices: 15259046--15259102 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
15259036 TACTTTATAC
15259046 AAAGTATGTTGAATTAAAATTATAACTA
1 AAAGTATGTTGAATTAAAATTATAACTA
15259074 AAAGTATGTTGAATTAAAATTATAACTA
1 AAAGTATGTTGAATTAAAATTATAACTA
15259102 A
1 A
15259103 CTAAATAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.35
Consensus pattern (28 bp):
AAAGTATGTTGAATTAAAATTATAACTA
Found at i:15270958 original size:28 final size:28
Alignment explanation
Indices: 15270891--15270958 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
15270881 ATTCTGTTAA
*
15270891 GCACCACAGTGCTCACTACTACGTAAAT
1 GCACCTCAGTGCTCACTACTACGTAAAT
* * *
15270919 GCA-CTACGGTGCTCACTGCTACGTGAAT
1 GCACCT-CAGTGCTCACTACTACGTAAAT
15270947 GCACCTCAGTGC
1 GCACCTCAGTGC
15270959 ACTTTTGTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
27 1 0.03
28 30 0.91
29 2 0.06
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (28 bp):
GCACCTCAGTGCTCACTACTACGTAAAT
Found at i:15272590 original size:45 final size:45
Alignment explanation
Indices: 15272502--15272676 Score: 189
Period size: 45 Copynumber: 4.0 Consensus size: 45
15272492 GTAAGAAAAT
* * *
15272502 CAACACCAGTACATAGTACA---TGTATGTATATGGCATGATAGC
1 CAACACCGGTACATAGTACATGTTGTATTTATATGGCATGAAAGC
* *
15272544 CAACACCGGTACATAGTACCTGTTGTATTTACATGGCATGAAAGC
1 CAACACCGGTACATAGTACATGTTGTATTTATATGGCATGAAAGC
* * * * * *
15272589 CAACACCGATAAATAGTACATATTGTATGTATATAGCATGATAGC
1 CAACACCGGTACATAGTACATGTTGTATTTATATGGCATGAAAGC
*
15272634 CAATACCGGTACATAGTATC-TGCTT-TATTTATATGGCATGAAA
1 CAACACCGGTACATAGTA-CATG-TTGTATTTATATGGCATGAAA
15272677 ATCGGCACCT
Statistics
Matches: 108, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
42 18 0.17
45 87 0.81
46 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (45 bp):
CAACACCGGTACATAGTACATGTTGTATTTATATGGCATGAAAGC
Found at i:15272663 original size:90 final size:90
Alignment explanation
Indices: 15272522--15272712 Score: 267
Period size: 90 Copynumber: 2.1 Consensus size: 90
15272512 ACATAGTACA
*
15272522 TGTATGTATATGGCATGATAGCCAACACCGGTACATAGTACCTGTTGTATTTACATGGCATGAAA
1 TGTATGTATATAGCATGATAGCCAACACCGGTACATAGTACCTGTTGTATTTACATGGCATGAAA
*
15272587 GCCAACACCGATAAATAGTACATAT
66 ACCAACACCGATAAATAGTACATAT
* * *
15272612 TGTATGTATATAGCATGATAGCCAATACCGGTACATAGTATCTGCTT-TATTTATATGGCATGAA
1 TGTATGTATATAGCATGATAGCCAACACCGGTACATAGTACCTG-TTGTATTTACATGGCATGAA
* ** * * *
15272676 AATCGGCACCTATACATAGTACTTAT
65 AACCAACACCGATAAATAGTACATAT
15272702 TGTATGTATAT
1 TGTATGTATAT
15272713 TCTAATTGTT
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 87 0.98
91 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (90 bp):
TGTATGTATATAGCATGATAGCCAACACCGGTACATAGTACCTGTTGTATTTACATGGCATGAAA
ACCAACACCGATAAATAGTACATAT
Found at i:15281318 original size:6 final size:6
Alignment explanation
Indices: 15281307--15281333 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15281297 TAATGTATAG
15281307 AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAA
15281334 GGATGTATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:15287457 original size:13 final size:13
Alignment explanation
Indices: 15287439--15287476 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
15287429 ATGGGGGTAG
15287439 GATTCTGTATATCT
1 GATTCTGT-TATCT
15287453 G-TTCTGCTTATCT
1 GATTCTG-TTATCT
15287466 GATTCTGTTAT
1 GATTCTGTTAT
15287477 TTGTATCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.53
Consensus pattern (13 bp):
GATTCTGTTATCT
Found at i:15288801 original size:157 final size:156
Alignment explanation
Indices: 15288525--15288986 Score: 523
Period size: 157 Copynumber: 3.0 Consensus size: 156
15288515 GATTTTTTTT
*
15288525 AAAAA-GAGAAAATTTAGATTTTTAAAAATAAAAACCTA--TTTTTAGTCATTTTAAAGG--A--
1 AAAAAGGAG-AAATTTAGATATTTAAAAATAAAAACCTATTTTTTTAGTCATTTTAAAGGAAAGT
* * * *
15288583 --AAA-TTTTAAAACAAATTTTTGATTTTTTTTCTACTACTTCAAAATAAAAGTTTTGATCTTTA
65 TTAAATTTTTAAAACAAATTTTTGA-TTTTTTTCAACTATTTCGAAATAAAAGCTTTGATCTTTA
*
15288645 AGAAAAGTAGTGATTTTTCAAAAGAAAA
129 AGAAAAGTAGTGATTTTTTAAAAGAAAA
* *
15288673 AAAAAGGAGAAAGTTTAGATGTTTAAAAATAAAAATCTATTTTTTTAGTCATTTTAAAGGAAAGT
1 AAAAAGGAGAAA-TTTAGATATTTAAAAATAAAAACCTATTTTTTTAGTCATTTTAAAGGAAAGT
* * *
15288738 TTAAATTTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTTGAAATAAAAGCTTTGATCTTTAA
65 TTAAATTTTTAAAACAAATTTTTGATTTTTTTCAACTATTTCGAAATAAAAGCTTTGATCTTTAA
*
15288803 GAAAATTAGTGATTTTTTAAAA-AAAA
130 GAAAAGTAGTGATTTTTTAAAAGAAAA
* *** * * * *** * *
15288829 AGAAAGTTTAGATTTAAAAAAAAAAAAAAAGAAAACCCATTTTTTTGAGTCATTTTAAAGGAAAG
1 AAAAAGGAGAAATTTAGATATTTAAAAATA-AAAACCTATTTTTTT-AGTCATTTTAAAGGAAAG
* * * * *
15288894 TTTAAATTTTTAAAACAAATTTTTGATTTTTTTAAAATTATTTCGTAATAAAATCTTTTATCTTT
64 TTTAAATTTTTAAAACAAATTTTTGATTTTTTT-CAACTATTTCGAAATAAAAGCTTTGATCTTT
*
15288959 AATAAAAGTAGTGATTTTTTAAAAGAAA
128 AAGAAAAGTAGTGATTTTTTAAAAGAAA
15288987 GCTTTAATTT
Statistics
Matches: 264, Mismatches: 35, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
148 8 0.03
149 27 0.10
151 19 0.07
153 1 0.00
155 11 0.04
156 24 0.09
157 107 0.41
158 64 0.24
159 3 0.01
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (156 bp):
AAAAAGGAGAAATTTAGATATTTAAAAATAAAAACCTATTTTTTTAGTCATTTTAAAGGAAAGTT
TAAATTTTTAAAACAAATTTTTGATTTTTTTCAACTATTTCGAAATAAAAGCTTTGATCTTTAAG
AAAAGTAGTGATTTTTTAAAAGAAAA
Found at i:15289704 original size:21 final size:21
Alignment explanation
Indices: 15289679--15289755 Score: 131
Period size: 21 Copynumber: 3.7 Consensus size: 21
15289669 ATCGTCAAGG
15289679 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
15289700 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
15289721 ATATGCAATCTTTAGATATG--
1 ATATGCAATC-TTAGATATGAT
15289741 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
15289756 AGATATGATT
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
19 5 0.09
20 10 0.18
21 31 0.56
22 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:15289781 original size:22 final size:22
Alignment explanation
Indices: 15289679--15289781 Score: 117
Period size: 21 Copynumber: 4.8 Consensus size: 22
15289669 ATCGTCAAGG
15289679 ATATGCAATCTT-AGATATGAT
1 ATATGCAATCTTGAGATATGAT
15289700 ATATGCAATCTT-AGATATGAT
1 ATATGCAATCTTGAGATATGAT
*
15289721 ATATGCAATCTTTAGATATG--
1 ATATGCAATCTTGAGATATGAT
15289741 ATATGCAATCTTAGAAGATATGAT
1 ATATGCAATCTT-G-AGATATGAT
* *
15289765 -TTTGTAATCTTAGAGAT
1 ATATGCAATCTT-GAGAT
15289782 TTAATTTGTA
Statistics
Matches: 74, Mismatches: 3, Indels: 9
0.86 0.03 0.10
Matches are distributed among these distances:
20 12 0.16
21 33 0.45
22 18 0.24
23 11 0.15
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATATGCAATCTTGAGATATGAT
Found at i:15290026 original size:23 final size:23
Alignment explanation
Indices: 15289982--15290026 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
15289972 TCTTATTTTG
* *
15289982 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
15290005 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
15290027 CATATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:15295825 original size:3 final size:3
Alignment explanation
Indices: 15295811--15295840 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
15295801 AGATATAGTA
*
15295811 GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
15295841 TAAGATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.30
Consensus pattern (3 bp):
GAT
Found at i:15298891 original size:76 final size:75
Alignment explanation
Indices: 15298765--15299046 Score: 298
Period size: 76 Copynumber: 3.7 Consensus size: 75
15298755 ACGATACCAT
*** ** * ** *
15298765 ATGTGTGCCCAGCACTAGTTGGAAAAACTGATAATGAGTTG-AGCAAAGTGCTAGTCCGGTAAAT
1 ATGTGTGCCCAGCACTAGTTGGATGTACCAACAATGAGTTGCA-CCCAGTGCTAGTCAGGTAAAT
15298829 CGATGATATCAA
65 CGA-GATATCAA
* * * * *
15298841 ATGTGTGCCCAACACTAGCTGGATATACCAACAATGAGTTGCACCCAGTGCTAGTCGGGTAAACC
1 ATGTGTGCCCAGCACTAGTTGGATGTACCAACAATGAGTTGCACCCAGTGCTAGTCAGGTAAATC
15298906 GACGATATCAA
66 GA-GATATCAA
* * ** *
15298917 ATGTGTGCCCAGCACTAGTTGGATGTACCAACAATAAGTTGCGCCCAAAGCTAGTCAAGTAAATC
1 ATGTGTGCCCAGCACTAGTTGGATGTACCAACAATGAGTTGCACCCAGTGCTAGTCAGGTAAATC
*
15298982 GACATATC-A
66 GAGATATCAA
* * ** *
15298991 ATGTGTGCCTAGTACTAGTTCAATGTACCAACAATGAGTTGCACCCAGCGCTAGTC
1 ATGTGTGCCCAGCACTAGTTGGATGTACCAACAATGAGTTGCACCCAGTGCTAGTC
15299047 GGATAAACAG
Statistics
Matches: 174, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
74 49 0.28
75 5 0.03
76 119 0.68
77 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (75 bp):
ATGTGTGCCCAGCACTAGTTGGATGTACCAACAATGAGTTGCACCCAGTGCTAGTCAGGTAAATC
GAGATATCAA
Found at i:15298970 original size:152 final size:149
Alignment explanation
Indices: 15298741--15299054 Score: 360
Period size: 152 Copynumber: 2.1 Consensus size: 149
15298731 GCCCGGTGTA
* * * ** * *
15298741 AGTCGAATAAACTGACGATACCATATGTGTGCCCAGCACTAGTTGGAAAAACTGATAATGAGTTG
1 AGTCGGATAAACCGACGATACCAAATGTGTGCCCAGCACTAGTTGGAAAAACCAACAATAAGTTG
** * **
15298806 AGCAAAGTGCTAGTCCGGTAAATCGATGATATCAAATGTGTGCCCAACACTAGCTGGATATACCA
66 AGCAAAG-GCTAGTCAAGTAAATCGA-CATATC-AATGTGTGCCCAACACTAGCTCAATATACCA
*
15298871 ACAATGAGTTGCACCCAGTGCT
128 ACAATGAGTTGCACCCAGCGCT
* * ***
15298893 AGTCGGGTAAACCGACGATATCAAATGTGTGCCCAGCACTAGTTGGATGTACCAACAATAAGTTG
1 AGTCGGATAAACCGACGATACCAAATGTGTGCCCAGCACTAGTTGGAAAAACCAACAATAAGTTG
* * ** * *
15298958 CGCCCAAA-GCTAGTCAAGTAAATCGACATATCAATGTGTGCCTAGTACTAGTTCAATGTACCAA
66 AG--CAAAGGCTAGTCAAGTAAATCGACATATCAATGTGTGCCCAACACTAGCTCAATATACCAA
15299022 CAATGAGTTGCACCCAGCGCT
129 CAATGAGTTGCACCCAGCGCT
15299043 AGTCGGATAAAC
1 AGTCGGATAAAC
15299055 AGACAAATAC
Statistics
Matches: 135, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
150 56 0.41
151 5 0.04
152 70 0.52
154 4 0.03
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (149 bp):
AGTCGGATAAACCGACGATACCAAATGTGTGCCCAGCACTAGTTGGAAAAACCAACAATAAGTTG
AGCAAAGGCTAGTCAAGTAAATCGACATATCAATGTGTGCCCAACACTAGCTCAATATACCAACA
ATGAGTTGCACCCAGCGCT
Found at i:15304106 original size:34 final size:34
Alignment explanation
Indices: 15304026--15304106 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 34
15304016 ATACAATTAT
* *
15304026 CATATCAAAATGTCACATTTCCAGAAACATATAC
1 CATATCCAAATGTCACATTTCCAGAAACATATAA
* * ** *
15304060 CAGAT-CAGAATGTCATATTTTTAGAACCATATAA
1 CATATCCA-AATGTCACATTTCCAGAAACATATAA
15304094 CATATCCAAATGT
1 CATATCCAAATGT
15304107 GTTCATAATC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
33 1 0.03
34 34 0.92
35 2 0.05
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (34 bp):
CATATCCAAATGTCACATTTCCAGAAACATATAA
Found at i:15305422 original size:16 final size:16
Alignment explanation
Indices: 15305401--15305434 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
15305391 CTTACGCTCA
15305401 ATTCAAATGATACTCT
1 ATTCAAATGATACTCT
15305417 ATTCAAATGATACTCT
1 ATTCAAATGATACTCT
15305433 AT
1 AT
15305435 AAGGATTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTCAAATGATACTCT
Found at i:15324297 original size:95 final size:95
Alignment explanation
Indices: 15324134--15324325 Score: 339
Period size: 95 Copynumber: 2.0 Consensus size: 95
15324124 TTACTTAACT
*
15324134 TACCTTAACATACCAACAATTAGGCAATTAAAATACATTGGAATTAAGCAAGAAATCCCTTTGGC
1 TACCTTAACATACCAACAATTAAGCAATTAAAATACATTGGAATTAAGCAAGAAATCCCTTTGGC
* *
15324199 ATCTTATACATTTATATGCAAATCAACAAA
66 ATCTCATACATTTATAAGCAAATCAACAAA
*
15324229 TACCTTAACATACCAACAATTAAGCAATTAAAATACATTGGAATTAAGCATGAAATCCCTTTGGC
1 TACCTTAACATACCAACAATTAAGCAATTAAAATACATTGGAATTAAGCAAGAAATCCCTTTGGC
*
15324294 ATCTCATACATTTATAAGCAAATCAACTAA
66 ATCTCATACATTTATAAGCAAATCAACAAA
15324324 TA
1 TA
15324326 AATCAAATAG
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 92 1.00
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (95 bp):
TACCTTAACATACCAACAATTAAGCAATTAAAATACATTGGAATTAAGCAAGAAATCCCTTTGGC
ATCTCATACATTTATAAGCAAATCAACAAA
Found at i:15331073 original size:27 final size:26
Alignment explanation
Indices: 15331043--15331140 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 26
15331033 ACCTAGAAAT
15331043 CTAAACCCTAAACCCAAACACATTACA
1 CTAAACCCTAAACCCAAACACA-TACA
* *
15331070 CTAAACCTTAAACTC-AA-AC--ACA
1 CTAAACCCTAAACCCAAACACATACA
*
15331092 -T-AACCCTAAACTCAAACACATAACA
1 CTAAACCCTAAACCCAAACACAT-ACA
*
15331117 CTAAACCCTTAAACACTAAACACA
1 CTAAACCC-TAAAC-CCAAACACA
15331141 ACCCCTAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
20 11 0.19
21 3 0.05
22 5 0.09
25 5 0.09
26 3 0.05
27 18 0.32
28 5 0.09
29 7 0.12
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (26 bp):
CTAAACCCTAAACCCAAACACATACA
Found at i:15331090 original size:20 final size:20
Alignment explanation
Indices: 15331073--15331122 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
15331063 CATTACACTA
*
15331073 AACCTTAAACTCAAACACAT
1 AACCCTAAACTCAAACACAT
15331093 AACCCTAAACTCAAACACAT
1 AACCCTAAACTCAAACACAT
*
15331113 AACACTAAAC
1 AACCCTAAAC
15331123 CCTTAAACAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (20 bp):
AACCCTAAACTCAAACACAT
Found at i:15331100 original size:47 final size:48
Alignment explanation
Indices: 15331045--15331149 Score: 151
Period size: 47 Copynumber: 2.2 Consensus size: 48
15331035 CTAGAAATCT
* *
15331045 AAACCCTAAACCCAAACACATTACACTAAA-CCTTAAACTC-AAACAC
1 AAACCCTAAACCCAAACACATAACACTAAACCCTTAAACACTAAACAC
*
15331091 ATAACCCTAAACTCAAACACATAACACTAAACCCTTAAACACTAAACAC
1 A-AACCCTAAACCCAAACACATAACACTAAACCCTTAAACACTAAACAC
*
15331140 AACCCCTAAA
1 AAACCCTAAA
15331150 TTTAATAACC
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
46 1 0.02
47 27 0.52
48 17 0.33
49 7 0.13
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.15
Consensus pattern (48 bp):
AAACCCTAAACCCAAACACATAACACTAAACCCTTAAACACTAAACAC
Found at i:15331243 original size:14 final size:13
Alignment explanation
Indices: 15331195--15331269 Score: 55
Period size: 13 Copynumber: 5.5 Consensus size: 13
15331185 AACCTTAAAT
*
15331195 CCTAAACACAAAC
1 CCTAAACACTAAC
15331208 CCTAAATCA-TAA-
1 CCTAAA-CACTAAC
*
15331220 TCTCAAACACGTAAC
1 CCT-AAACAC-TAAC
15331235 CCTAAACACTTAAAC
1 CCTAAACAC-T-AAC
* *
15331250 CCAAAACACAAAC
1 CCTAAACACTAAC
15331263 CCTAAAC
1 CCTAAAC
15331270 CATAAACCAT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
12 4 0.08
13 20 0.41
14 12 0.24
15 13 0.27
ACGTcount: A:0.49, C:0.35, G:0.01, T:0.15
Consensus pattern (13 bp):
CCTAAACACTAAC
Found at i:15331282 original size:14 final size:13
Alignment explanation
Indices: 15331253--15331303 Score: 57
Period size: 14 Copynumber: 3.7 Consensus size: 13
15331243 CTTAAACCCA
* *
15331253 AAACACAAACCCT
1 AAACATAAACCAT
15331266 AAACCATAAACCAT
1 AAA-CATAAACCAT
15331280 AAACATAGAACCAT
1 AAACATA-AACCAT
15331294 AAACACTAAA
1 AAACA-TAAA
15331304 ACCTTAAACC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
13 7 0.21
14 24 0.73
15 2 0.06
ACGTcount: A:0.59, C:0.27, G:0.02, T:0.12
Consensus pattern (13 bp):
AAACATAAACCAT
Found at i:15331535 original size:20 final size:20
Alignment explanation
Indices: 15331510--15331551 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
15331500 TAGAAGCCAA
*
15331510 AACCATAAACTCAAAACCAT
1 AACCATAAACCCAAAACCAT
15331530 AACCATAAACCCAAAACCAT
1 AACCATAAACCCAAAACCAT
15331550 AA
1 AA
15331552 ATCTAGAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.57, C:0.31, G:0.00, T:0.12
Consensus pattern (20 bp):
AACCATAAACCCAAAACCAT
Found at i:15331545 original size:34 final size:32
Alignment explanation
Indices: 15331446--15331552 Score: 99
Period size: 34 Copynumber: 3.1 Consensus size: 32
15331436 CCCTAAATCT
*
15331446 TAAAATCAAAACCATAACCCTAAACCACAAA-TA
1 TAAAATCAAAACCATAA-CCTAAACCA-AAACCA
* *
15331479 TAAAATCTTAAACCAAAAACCTAGAAGCCAAAACCA
1 TAAAATC-AAAACC-ATAACCTA-AA-CCAAAACCA
*
15331515 TAAACTCAAAACCATAACCATAAACCCAAAACCA
1 TAAAATCAAAACCATAACC-TAAA-CCAAAACCA
15331549 TAAA
1 TAAA
15331553 TCTAGAATCT
Statistics
Matches: 61, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
33 7 0.11
34 29 0.48
35 15 0.25
36 10 0.16
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (32 bp):
TAAAATCAAAACCATAACCTAAACCAAAACCA
Found at i:15331562 original size:76 final size:75
Alignment explanation
Indices: 15331447--15331611 Score: 195
Period size: 76 Copynumber: 2.2 Consensus size: 75
15331437 CCTAAATCTT
* * * * *
15331447 AAAATCAAAACCATAACCCTAAACCACAAATATAAAATCTTAAACCAAAAACCTAGAAGCCAAAA
1 AAAACCAAAACCATAACCCAAAACCACAAATATAAAATCTCAAACCAAAAACATAGAACCCAAAA
15331512 CCATAAACTC
66 CCATAAACTC
* * * * ** * *
15331522 AAAACCATAACCATAAACCCAAAACCATAAATCTAGAATCTCAAACCCTAAACATTGAACCCTAA
1 AAAACCAAAACCAT-AACCCAAAACCACAAATATAAAATCTCAAACCAAAAACATAGAACCCAAA
15331587 ACCATAAACTC
65 ACCATAAACTC
*
15331598 AAACCCAAAACCAT
1 AAAACCAAAACCAT
15331612 GAACACTTAA
Statistics
Matches: 74, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
75 12 0.16
76 62 0.84
ACGTcount: A:0.53, C:0.29, G:0.02, T:0.15
Consensus pattern (75 bp):
AAAACCAAAACCATAACCCAAAACCACAAATATAAAATCTCAAACCAAAAACATAGAACCCAAAA
CCATAAACTC
Found at i:15331608 original size:20 final size:20
Alignment explanation
Indices: 15331506--15331611 Score: 64
Period size: 20 Copynumber: 5.5 Consensus size: 20
15331496 AACCTAGAAG
*
15331506 CCAAAACCATAAACTCAAAA
1 CCAAAACCATAAACTCAAAC
* * *
15331526 CCATAACCATAAACCCAAAA
1 CCAAAACCATAAACTCAAAC
*
15331546 CCATAAATC-TAGAATCTCAAAC
1 CCA-AAACCATA-AA-CTCAAAC
* *
15331568 CCTAAA-CAT----T-GAAC
1 CCAAAACCATAAACTCAAAC
*
15331582 CCTAAACCATAAACTCAAAC
1 CCAAAACCATAAACTCAAAC
15331602 CCAAAACCAT
1 CCAAAACCAT
15331612 GAACACTTAA
Statistics
Matches: 66, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
14 9 0.14
15 4 0.06
19 1 0.02
20 36 0.55
21 9 0.14
22 7 0.11
ACGTcount: A:0.51, C:0.32, G:0.02, T:0.15
Consensus pattern (20 bp):
CCAAAACCATAAACTCAAAC
Found at i:15338021 original size:20 final size:20
Alignment explanation
Indices: 15337996--15338049 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
15337986 TAAACAAAGG
15337996 CACTGAAGTGCAATTAGAGA
1 CACTGAAGTGCAATTAGAGA
* * *
15338016 CACTGAAGTGTAAATAGAGG
1 CACTGAAGTGCAATTAGAGA
*
15338036 CACCGAAGTGCAAT
1 CACTGAAGTGCAAT
15338050 CCTGTACAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.19
Consensus pattern (20 bp):
CACTGAAGTGCAATTAGAGA
Found at i:15341349 original size:34 final size:34
Alignment explanation
Indices: 15341309--15341375 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
15341299 TCAATAAAAG
*
15341309 AGTTGGTGCCATTTTCAAAGTAAAAATAAAACAA
1 AGTTGGTGCCATTTTCAAACTAAAAATAAAACAA
*
15341343 AGTTGGTGCCATTTTCAAACTGAAAATAAAACA
1 AGTTGGTGCCATTTTCAAACTAAAAATAAAACA
15341376 TTCATATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (34 bp):
AGTTGGTGCCATTTTCAAACTAAAAATAAAACAA
Found at i:15348908 original size:19 final size:19
Alignment explanation
Indices: 15348884--15348929 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
15348874 AAAGAAGTCT
* *
15348884 AATGCATATG-ATGTAATG
1 AATGCAAATGCATGGAATG
15348902 AAATGCAAATGCATGGAATG
1 -AATGCAAATGCATGGAATG
15348922 AATGCAAA
1 AATGCAAA
15348930 AAAGAGACGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.24
Consensus pattern (19 bp):
AATGCAAATGCATGGAATG
Found at i:15349374 original size:17 final size:17
Alignment explanation
Indices: 15349348--15349383 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15349338 TTCTATGATG
*
15349348 AAATGCCATGCAGTCAA
1 AAATGCCATGCAGCCAA
*
15349365 AAATGTCATGCAGCCAA
1 AAATGCCATGCAGCCAA
15349382 AA
1 AA
15349384 CAAAACACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.17, T:0.17
Consensus pattern (17 bp):
AAATGCCATGCAGCCAA
Found at i:15350798 original size:20 final size:20
Alignment explanation
Indices: 15350761--15350802 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
15350751 AAATAAAAAC
* *
15350761 AAATAGAAATACATGTATTAA
1 AAATAGAAATAAAAGTA-TAA
15350782 AAATA-AAATAAAAGTATAA
1 AAATAGAAATAAAAGTATAA
15350801 AA
1 AA
15350803 GCATGCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 5 0.26
20 9 0.47
21 5 0.26
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (20 bp):
AAATAGAAATAAAAGTATAA
Found at i:15351142 original size:3 final size:3
Alignment explanation
Indices: 15351134--15351199 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
15351124 GTATGTAGGC
15351134 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15351182 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
15351200 TATAGTATTA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15356400 original size:2 final size:2
Alignment explanation
Indices: 15356393--15356422 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
15356383 TGTTATGGAA
*
15356393 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15356423 GAAAATGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15356575 original size:36 final size:36
Alignment explanation
Indices: 15356535--15356742 Score: 134
Period size: 36 Copynumber: 5.6 Consensus size: 36
15356525 TATTTGTCAG
*
15356535 TTTATCCGACTAGTGCTGGGCGCAAATCATTGTCGA
1 TTTATCCAACTAGTGCTGGGCGCAAATCATTGTCGA
* * * * *
15356571 TTTATCCAATTAGTACTGGGTACACATTTGAT-ATTGTCGG
1 TTTATCCAACTAGTGCTGGG--CGCA---AATCATTGTCGA
* * * *
15356611 TTTATCCAACTAGCGCTGGGAGCAAAACATTGTCAA
1 TTTATCCAACTAGTGCTGGGCGCAAATCATTGTCGA
* * *
15356647 TTTATCCGACTAGTGCT-GGCACACATTTGAT-ATTGTCAA
1 TTTATCCAACTAGTGCTGGGCGCA-A----ATCATTGTCGA
* * * *
15356686 TTTATCCAACTAGCGTTGGGCGCAAAACATTGTCGG
1 TTTATCCAACTAGTGCTGGGCGCAAATCATTGTCGA
* *
15356722 TTTATCCGACTAGTGCAGGGC
1 TTTATCCAACTAGTGCTGGGC
15356743 ACACCTTCGT
Statistics
Matches: 128, Mismatches: 31, Indels: 26
0.69 0.17 0.14
Matches are distributed among these distances:
35 6 0.05
36 62 0.48
38 5 0.04
39 23 0.18
40 30 0.23
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (36 bp):
TTTATCCAACTAGTGCTGGGCGCAAATCATTGTCGA
Found at i:15356630 original size:40 final size:39
Alignment explanation
Indices: 15356563--15356705 Score: 132
Period size: 39 Copynumber: 3.7 Consensus size: 39
15356553 GGCGCAAATC
* * **
15356563 ATTGTCGATTTATCCAATTAGTACTGGGTACACATTTGAT
1 ATTGTCAATTTATCCAACTAGCGCTGGG-ACACATTTGAT
** * *
15356603 ATTGTCGGTTTATCCAACTAGCGCTGGGAGCA-A---AAC
1 ATTGTCAATTTATCCAACTAGCGCTGGGA-CACATTTGAT
* * *
15356639 ATTGTCAATTTATCCGACTAGTGCTGGCACACATTTGAT
1 ATTGTCAATTTATCCAACTAGCGCTGGGACACATTTGAT
*
15356678 ATTGTCAATTTATCCAACTAGCGTTGGG
1 ATTGTCAATTTATCCAACTAGCGCTGGG
15356706 CGCAAAACAT
Statistics
Matches: 81, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
35 2 0.02
36 26 0.32
39 27 0.33
40 26 0.32
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (39 bp):
ATTGTCAATTTATCCAACTAGCGCTGGGACACATTTGAT
Found at i:15356699 original size:75 final size:75
Alignment explanation
Indices: 15356528--15356746 Score: 294
Period size: 75 Copynumber: 2.9 Consensus size: 75
15356518 ACATATGTAT
* * * * * * *
15356528 TTGTCAGTTTATCCGACTAGTGCTGGGCGCAAATCATTGTCGATTTATCCAATTAGTACTGGGTA
1 TTGTCAGTTTATCCAACTAGCGCTGGGCGCAAAACATTGTCGATTTATCCGACTAGTGCT-GGCA
15356593 CACATTTGATA
65 CACATTTGATA
* * *
15356604 TTGTCGGTTTATCCAACTAGCGCTGGGAGCAAAACATTGTCAATTTATCCGACTAGTGCTGGCAC
1 TTGTCAGTTTATCCAACTAGCGCTGGGCGCAAAACATTGTCGATTTATCCGACTAGTGCTGGCAC
15356669 ACATTTGATA
66 ACATTTGATA
* * * *
15356679 TTGTCAATTTATCCAACTAGCGTTGGGCGCAAAACATTGTCGGTTTATCCGACTAGTGCAGGGCA
1 TTGTCAGTTTATCCAACTAGCGCTGGGCGCAAAACATTGTCGATTTATCCGACTAGTGC-TGGCA
15356744 CAC
65 CAC
15356747 CTTCGTCGGT
Statistics
Matches: 125, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
75 67 0.54
76 58 0.46
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (75 bp):
TTGTCAGTTTATCCAACTAGCGCTGGGCGCAAAACATTGTCGATTTATCCGACTAGTGCTGGCAC
ACATTTGATA
Found at i:15356893 original size:24 final size:24
Alignment explanation
Indices: 15356860--15356914 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
15356850 AACGATCCAT
* *
15356860 TGAAGAAGGTTGAAAATGATATAAA
1 TGAA-AAGGTCGAAAATAATATAAA
*
15356885 TGAAAAGGTCGAAAATAATATCAA
1 TGAAAAGGTCGAAAATAATATAAA
15356909 TGAAAA
1 TGAAAA
15356915 AGTCAATATC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.55, C:0.04, G:0.20, T:0.22
Consensus pattern (24 bp):
TGAAAAGGTCGAAAATAATATAAA
Found at i:15358982 original size:17 final size:17
Alignment explanation
Indices: 15358960--15359010 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
15358950 TTTACAGAAT
15358960 CAAATCTTCTAAGATTA
1 CAAATCTTCTAAGATTA
** *
15358977 CAAATCCCCTAAGATTG
1 CAAATCTTCTAAGATTA
* *
15358994 CATATCTTCGAAGATTA
1 CAAATCTTCTAAGATTA
15359011 TGTCTCATAT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (17 bp):
CAAATCTTCTAAGATTA
Found at i:15363744 original size:20 final size:22
Alignment explanation
Indices: 15363716--15363763 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
15363706 GTTTTTTACT
*
15363716 AAAATAATA-CAAAAGAA-ATA
1 AAAAAAATACCAAAAGAATATA
*
15363736 AAAAAAATACCAAAATAATATA
1 AAAAAAATACCAAAAGAATATA
15363758 AAAAAA
1 AAAAAA
15363764 TTATTTACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.33
21 7 0.29
22 9 0.38
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (22 bp):
AAAAAAATACCAAAAGAATATA
Found at i:15363764 original size:21 final size:19
Alignment explanation
Indices: 15363715--15363764 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
15363705 GGTTTTTTAC
*
15363715 TAAAATAATACAAAAGAAA
1 TAAAAAAATACAAAAGAAA
*
15363734 TAAAAAAAATACCAAAATAATA
1 T-AAAAAAATA-CAAAAGAA-A
15363756 TAAAAAAAT
1 TAAAAAAAT
15363765 TATTTACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 8 0.31
21 15 0.58
22 2 0.08
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (19 bp):
TAAAAAAATACAAAAGAAA
Found at i:15365214 original size:27 final size:27
Alignment explanation
Indices: 15365176--15365238 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
15365166 TTTTAGTCCT
*
15365176 GTGCCGCCAATGGGAATGGCACCACCG
1 GTGCCGCCAATGAGAATGGCACCACCG
15365203 GTGCCGCCAATGAGAATGGCACCACCG
1 GTGCCGCCAATGAGAATGGCACCACCG
15365230 GTGCCGCCA
1 GTGCCGCCA
15365239 TTCCATTACC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.35, G:0.32, T:0.11
Consensus pattern (27 bp):
GTGCCGCCAATGAGAATGGCACCACCG
Found at i:15365328 original size:19 final size:21
Alignment explanation
Indices: 15365287--15365335 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
15365277 TTGGTAAATA
15365287 ATTTTTTTATATTATTTTGGT
1 ATTTTTTTATATTATTTTGGT
*
15365308 ATTTTTTTAT-TTCTTTT-GT
1 ATTTTTTTATATTATTTTGGT
*
15365327 ATTATTTTA
1 ATTTTTTTA
15365336 GTAAAAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 10 0.38
20 6 0.23
21 10 0.38
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.73
Consensus pattern (21 bp):
ATTTTTTTATATTATTTTGGT
Found at i:15374450 original size:1 final size:1
Alignment explanation
Indices: 15374444--15374468 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
15374434 ACGGGACTCC
15374444 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
15374469 CTAATTACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:15375583 original size:26 final size:27
Alignment explanation
Indices: 15375537--15375588 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
15375527 CTTAGTAAAG
*
15375537 TGAAAAAAAATTGAAAAGATAAAAAAA
1 TGAAAAAAAATAGAAAAGATAAAAAAA
*
15375564 TGAAAAAAAATAG-AAGGATAAAAAA
1 TGAAAAAAAATAGAAAAGATAAAAAA
15375589 TATAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (27 bp):
TGAAAAAAAATAGAAAAGATAAAAAAA
Found at i:15383377 original size:41 final size:41
Alignment explanation
Indices: 15383313--15383397 Score: 116
Period size: 41 Copynumber: 2.1 Consensus size: 41
15383303 AATATTGTTG
* * * *
15383313 AATTGCACATTCGTGCCCATGTTTGTACTTCGATGCCCCTA
1 AATTACACATACGTACCCATGTTTGTACTTCGATACCCCTA
* *
15383354 AATTACACATACGTACCCCTGTTTGTACTTCGGTACCCCTA
1 AATTACACATACGTACCCATGTTTGTACTTCGATACCCCTA
15383395 AAT
1 AAT
15383398 GCACTTTTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (41 bp):
AATTACACATACGTACCCATGTTTGTACTTCGATACCCCTA
Found at i:15385479 original size:23 final size:21
Alignment explanation
Indices: 15385423--15385483 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 21
15385413 ATCAGTATAC
*
15385423 GACACATAAGTGCCT-TAAAA
1 GACACATAAGTGCCTGAAAAA
* *
15385443 GACACACGAGGTGCCTGAAATAA
1 GACACA-TAAGTGCCTGAAA-AA
15385466 GACACATAAAGTGCCTGA
1 GACACAT-AAGTGCCTGA
15385484 TTGGCAAGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 6 0.19
21 7 0.22
22 2 0.06
23 17 0.53
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.16
Consensus pattern (21 bp):
GACACATAAGTGCCTGAAAAA
Found at i:15386893 original size:20 final size:20
Alignment explanation
Indices: 15386849--15386893 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15386839 TCATTTTTCC
*
15386849 TAATTTATCTTTATTAAAAT
1 TAATTTATCTTAATTAAAAT
*
15386869 AAATTTATC-TAATTAAAACT
1 TAATTTATCTTAATTAAAA-T
15386889 TAATT
1 TAATT
15386894 AGACACATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (20 bp):
TAATTTATCTTAATTAAAAT
Found at i:15389090 original size:32 final size:32
Alignment explanation
Indices: 15389054--15389126 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
15389044 TTTAATATGG
*
15389054 TATCGATATAGTATCGATGCCTAGTAATTAAA
1 TATCGATACAGTATCGATGCCTAGTAATTAAA
* *
15389086 TATCGATACAGTATTGATGCCTAGTAATTGAA
1 TATCGATACAGTATCGATGCCTAGTAATTAAA
15389118 TATCGATAC
1 TATCGATAC
15389127 TAACTATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (32 bp):
TATCGATACAGTATCGATGCCTAGTAATTAAA
Found at i:15391772 original size:28 final size:26
Alignment explanation
Indices: 15391740--15391794 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 26
15391730 CTCTTTTGAG
15391740 TTAATAAATTCTCTTTGAGTTGTTCTTT
1 TTAATAAATTCTC-TTGAGTT-TTCTTT
*
15391768 TTAATAAATTTTCTTGAGTTTTCTTT
1 TTAATAAATTCTCTTGAGTTTTCTTT
15391794 T
1 T
15391795 AGGTTTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 7 0.27
27 7 0.27
28 12 0.46
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.60
Consensus pattern (26 bp):
TTAATAAATTCTCTTGAGTTTTCTTT
Found at i:15391975 original size:12 final size:13
Alignment explanation
Indices: 15391946--15391984 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
15391936 TTTTCATCTA
*
15391946 TCTTCCTTATTAT
1 TCTTCTTTATTAT
15391959 T-TTCTTTATT-T
1 TCTTCTTTATTAT
15391970 TCTTCTTTATTAT
1 TCTTCTTTATTAT
15391983 TC
1 TC
15391985 CAATCTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
11 2 0.09
12 17 0.74
13 4 0.17
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (13 bp):
TCTTCTTTATTAT
Found at i:15402500 original size:18 final size:18
Alignment explanation
Indices: 15402477--15402513 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
15402467 TTTGCTTTTG
15402477 ATTTAAATTGGGCTCTCA
1 ATTTAAATTGGGCTCTCA
*
15402495 ATTTAAGTTGGGCTCTCA
1 ATTTAAATTGGGCTCTCA
15402513 A
1 A
15402514 ACTAAGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (18 bp):
ATTTAAATTGGGCTCTCA
Found at i:15402519 original size:18 final size:18
Alignment explanation
Indices: 15402484--15402520 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15402474 TTGATTTAAA
**
15402484 TTGGGCTCTCAATTTAAG
1 TTGGGCTCTCAAACTAAG
15402502 TTGGGCTCTCAAACTAAG
1 TTGGGCTCTCAAACTAAG
15402520 T
1 T
15402521 GAAGTAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (18 bp):
TTGGGCTCTCAAACTAAG
Found at i:15406296 original size:6 final size:7
Alignment explanation
Indices: 15406279--15406311 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
15406269 AAGAAATCAC
15406279 AAAAAAT
1 AAAAAAT
15406286 AAAAAAT
1 AAAAAAT
15406293 AAAAAAT
1 AAAAAAT
15406300 -AAAAAT
1 AAAAAAT
15406306 AAAAAA
1 AAAAAA
15406312 ACCAAATTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:15406312 original size:14 final size:14
Alignment explanation
Indices: 15406279--15406311 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
15406269 AAGAAATCAC
15406279 AAAAAATAAAAAAT
1 AAAAAATAAAAAAT
15406293 AAAAAAT-AAAAAT
1 AAAAAATAAAAAAT
15406306 AAAAAA
1 AAAAAA
15406312 ACCAAATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAAATAAAAAAT
Found at i:15406575 original size:15 final size:16
Alignment explanation
Indices: 15406557--15406590 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
15406547 AAATTAAAAT
*
15406557 AATTAA-CTAGATGCA
1 AATTAACCTAAATGCA
15406572 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
15406588 AAT
1 AAT
15406591 GAGATACAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:15413442 original size:13 final size:14
Alignment explanation
Indices: 15413424--15413481 Score: 66
Period size: 13 Copynumber: 4.3 Consensus size: 14
15413414 TAGGGCTCTT
*
15413424 GGTTTAAGGTTT-A
1 GGTTTAGGGTTTAA
15413437 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
*
15413451 GATTTAGGGTTTAA
1 GGTTTAGGGTTTAA
**
15413465 TATTT-GGGTTTAA
1 GGTTTAGGGTTTAA
15413478 GGTT
1 GGTT
15413482 CAAGGGTTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
13 21 0.54
14 18 0.46
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:15413449 original size:20 final size:21
Alignment explanation
Indices: 15413424--15413463 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
15413414 TAGGGCTCTT
*
15413424 GGTTTAAGGTTTA-GGTTTAG
1 GGTTTAAGATTTAGGGTTTAG
15413444 GGTTTAAGATTTAGGGTTTA
1 GGTTTAAGATTTAGGGTTTA
15413464 ATATTTGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.45
Consensus pattern (21 bp):
GGTTTAAGATTTAGGGTTTAG
Found at i:15413458 original size:14 final size:14
Alignment explanation
Indices: 15413426--15413478 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
15413416 GGGCTCTTGG
* *
15413426 TTTAAGGTTT-AGG
1 TTTAGGGTTTAAGA
15413439 TTTAGGGTTTAAGA
1 TTTAGGGTTTAAGA
*
15413453 TTTAGGGTTTAATA
1 TTTAGGGTTTAAGA
15413467 TTT-GGGTTTAAG
1 TTTAGGGTTTAAG
15413479 GTTCAAGGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
13 17 0.49
14 18 0.51
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTAAGA
Found at i:15413600 original size:21 final size:20
Alignment explanation
Indices: 15413553--15413601 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
15413543 GGTTTTGGGT
*
15413553 TTGAG-TTTAGGGTTTATGC
1 TTGAGATTTAGGGTTCATGC
15413572 TT-AGGATTTAGGGTTCATGGC
1 TTGA-GATTTAGGGTTCAT-GC
15413593 TTGAGATTT
1 TTGAGATTT
15413602 TAGATTTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 1 0.04
19 3 0.12
20 11 0.44
21 9 0.36
22 1 0.04
ACGTcount: A:0.18, C:0.06, G:0.31, T:0.45
Consensus pattern (20 bp):
TTGAGATTTAGGGTTCATGC
Found at i:15418809 original size:19 final size:21
Alignment explanation
Indices: 15418773--15418814 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
15418763 TAACTACTTG
15418773 AAGATTAATGTATAATTAATT
1 AAGATTAATGTATAATTAATT
15418794 AAGATTAA-GT-TAATTAATT
1 AAGATTAATGTATAATTAATT
15418813 AA
1 AA
15418815 TTTTAACTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 11 0.52
20 2 0.10
21 8 0.38
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (21 bp):
AAGATTAATGTATAATTAATT
Found at i:15419106 original size:22 final size:20
Alignment explanation
Indices: 15419066--15419106 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
15419056 CATTGTTAAG
*
15419066 AAATTGATGAATTAGGTTTC
1 AAATTGATGAATTAAGTTTC
15419086 AAATTGATAGAAATTAAGTTT
1 AAATTGAT-G-AATTAAGTTT
15419107 ACATTATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 9 0.50
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (20 bp):
AAATTGATGAATTAAGTTTC
Found at i:15437338 original size:16 final size:15
Alignment explanation
Indices: 15437311--15437344 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
15437301 ATAACTAGTA
15437311 TATAATTATATTAAT
1 TATAATTATATTAAT
15437326 TATAATATATATTAAT
1 TATAAT-TATATTAAT
15437342 TAT
1 TAT
15437345 TATCAACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:15446207 original size:27 final size:27
Alignment explanation
Indices: 15446146--15446208 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
15446136 TTCAAGCAAT
15446146 TAATAAAAATTATTTGTAAAATTAATGA
1 TAAT-AAAATTATTTGTAAAATTAATGA
*
15446174 TATATAAAA-TATTTTTAAAACTTAAAT-A
1 TA-ATAAAATTATTTGTAAAA-TT-AATGA
15446202 TAATAAA
1 TAATAAA
15446209 TGATATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
27 15 0.48
28 11 0.35
29 5 0.16
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.40
Consensus pattern (27 bp):
TAATAAAATTATTTGTAAAATTAATGA
Found at i:15451386 original size:16 final size:15
Alignment explanation
Indices: 15451365--15451428 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
15451355 AATCAAAAGT
15451365 ATTTTTAAAATATTTA
1 ATTTTTAAAAT-TTTA
* *
15451381 ATTTTTAATATTTTT
1 ATTTTTAAAATTTTA
*
15451396 ATTTTT-GAA-TTTA
1 ATTTTTAAAATTTTA
*
15451409 A-ATTTAAAATTTTTA
1 ATTTTTAAAA-TTTTA
15451424 ATTTT
1 ATTTT
15451429 AATAAACCTA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
12 3 0.08
13 6 0.17
14 1 0.03
15 14 0.39
16 12 0.33
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (15 bp):
ATTTTTAAAATTTTA
Found at i:15451399 original size:15 final size:16
Alignment explanation
Indices: 15451364--15451401 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
15451354 AAATCAAAAG
15451364 TATTTTTAAAATATTT
1 TATTTTTAAAATATTT
* *
15451380 AATTTTTAATAT-TTT
1 TATTTTTAAAATATTT
15451395 TATTTTT
1 TATTTTT
15451402 GAATTTAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTTTAAAATATTT
Found at i:15462950 original size:3 final size:3
Alignment explanation
Indices: 15462944--15463025 Score: 164
Period size: 3 Copynumber: 27.3 Consensus size: 3
15462934 CTTAATAACA
15462944 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
15462992 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
15463026 GACTATAAAA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15468208 original size:20 final size:20
Alignment explanation
Indices: 15468183--15468221 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15468173 GAGTTCATAC
15468183 AGAGGCACCGAAGTGCAAAT
1 AGAGGCACCGAAGTGCAAAT
*
15468203 AGAGGCACTGAAGTGCAAA
1 AGAGGCACCGAAGTGCAAA
15468222 CAAATACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.18, G:0.31, T:0.10
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAAAT
Found at i:15473976 original size:56 final size:50
Alignment explanation
Indices: 15473765--15474012 Score: 280
Period size: 50 Copynumber: 4.8 Consensus size: 50
15473755 TTTCTTGTAC
* * * ** * * *
15473765 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
* * *** *
15473815 TGCCCATGCCATGTCCCAGACATAGTCTTATGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
*
15473865 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
* *
15473915 TGCCAATGCCATTTCCCAGACAGGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TCTC--GG
*
15473970 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
15474013 TTACCCAAAT
Statistics
Matches: 167, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
50 121 0.72
52 1 0.01
53 4 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
Found at i:15486748 original size:38 final size:37
Alignment explanation
Indices: 15486706--15486814 Score: 114
Period size: 38 Copynumber: 3.2 Consensus size: 37
15486696 TATTCAAAAA
15486706 TAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGACT
1 TAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGA-T
*
15486744 TAGTTTA-TAC-TG--TAGTTA---TTCAA--AA-A-
1 TAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGAT
15486770 TAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGAAT
1 TAGTTTAGTACGTGAATAATTAGTTTTCAACCAAG-AT
15486808 TAGTTTA
1 TAGTTTA
15486815 TACTGTAGTT
Statistics
Matches: 57, Mismatches: 2, Indels: 24
0.69 0.02 0.29
Matches are distributed among these distances:
26 7 0.12
27 3 0.05
28 3 0.05
29 2 0.04
30 5 0.09
31 5 0.09
33 5 0.09
34 5 0.09
35 2 0.04
36 2 0.04
37 4 0.07
38 14 0.25
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (37 bp):
TAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGAT
Found at i:15486755 original size:64 final size:64
Alignment explanation
Indices: 15486680--15486830 Score: 293
Period size: 64 Copynumber: 2.4 Consensus size: 64
15486670 CTTGCTTTAA
*
15486680 TAGTTTATACTGTAGTTATTCAAAAATAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGACT
1 TAGTTTATACTGTAGTTATTCAAAAATAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGAAT
15486744 TAGTTTATACTGTAGTTATTCAAAAATAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGAAT
1 TAGTTTATACTGTAGTTATTCAAAAATAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGAAT
15486808 TAGTTTATACTGTAGTTATTCAA
1 TAGTTTATACTGTAGTTATTCAA
15486831 GAACACCATC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 86 1.00
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (64 bp):
TAGTTTATACTGTAGTTATTCAAAAATAGTTTAGTACGTGAATAATTAGTTTTCAACCAAGAAT
Found at i:15486811 original size:33 final size:33
Alignment explanation
Indices: 15486710--15486811 Score: 88
Period size: 33 Copynumber: 3.2 Consensus size: 33
15486700 CAAAAATAGT
*
15486710 TTAGTACGTGAATAATTAGTTTTCAACCAAGAC
1 TTAGTACGTGAATAATTAGTTTTCAACCAAGAA
* * * * *
15486743 TTAGT---T-TATACTGTAGTTATTCAA-AAATAGT
1 TTAGTACGTGAATAAT-TAGTT-TTCAACCAAGA-A
15486774 TTAGTACGTGAATAATTAGTTTTCAACCAAGAA
1 TTAGTACGTGAATAATTAGTTTTCAACCAAGAA
15486807 TTAGT
1 TTAGT
15486812 TTATACTGTA
Statistics
Matches: 51, Mismatches: 10, Indels: 16
0.66 0.13 0.21
Matches are distributed among these distances:
29 4 0.08
30 9 0.18
31 10 0.20
33 15 0.29
34 9 0.18
35 4 0.08
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (33 bp):
TTAGTACGTGAATAATTAGTTTTCAACCAAGAA
Found at i:15489970 original size:50 final size:50
Alignment explanation
Indices: 15489861--15490053 Score: 244
Period size: 50 Copynumber: 3.7 Consensus size: 50
15489851 GGTAAAGAGA
* * * *
15489861 TCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATCATGAGATG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAGAT--T-AGAAG
15489917 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATTAGAAG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATTAGAAG
* *
15489967 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATTAGAAG
* *
15490017 TCCTC-CGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCC-CATGTAAGACCATGTCTGGGACATGGCGTTGGCA
15490054 TGTTATGATG
Statistics
Matches: 128, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
50 85 0.66
51 2 0.02
53 5 0.04
55 1 0.01
56 35 0.27
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATTAGAAG
Found at i:15495096 original size:19 final size:19
Alignment explanation
Indices: 15495072--15495109 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
15495062 AGAAACACGT
15495072 GGCTCATGTGTTGGAGAAA
1 GGCTCATGTGTTGGAGAAA
15495091 GGCTCATGTGTTGGAGAAA
1 GGCTCATGTGTTGGAGAAA
15495110 TGCACTGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.37, T:0.26
Consensus pattern (19 bp):
GGCTCATGTGTTGGAGAAA
Found at i:15495252 original size:30 final size:30
Alignment explanation
Indices: 15495216--15495275 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
15495206 TCTAAAAAAG
15495216 TCCAATCAGTAGCTCTCATAATATGAGAAA
1 TCCAATCAGTAGCTCTCATAATATGAGAAA
*
15495246 TCCAATCAGTAGGTCTCATAATATGAGAAA
1 TCCAATCAGTAGCTCTCATAATATGAGAAA
15495276 GACATAGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (30 bp):
TCCAATCAGTAGCTCTCATAATATGAGAAA
Found at i:15502792 original size:30 final size:33
Alignment explanation
Indices: 15502758--15502828 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 33
15502748 TATGGAATAT
*
15502758 TATCTTTTAGG-A-ATATCTA-AATATATTGTA
1 TATCTTTTAGGTATATATCTAGAATATATTATA
*
15502788 TATCTTTTAGGTATATATTTAGGAATATATTATA
1 TATCTTTTAGGTATATATCTA-GAATATATTATA
15502822 TATCTTT
1 TATCTTT
15502829 GGCTTAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 11 0.31
31 1 0.03
32 6 0.17
34 17 0.49
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.51
Consensus pattern (33 bp):
TATCTTTTAGGTATATATCTAGAATATATTATA
Found at i:15529009 original size:19 final size:19
Alignment explanation
Indices: 15528985--15529060 Score: 116
Period size: 19 Copynumber: 4.0 Consensus size: 19
15528975 NNNNNNNNNN
*
15528985 ATATCTAAGATTGCATATC
1 ATATCTAAGATTACATATC
* *
15529004 ATATCTAAGATTATATATT
1 ATATCTAAGATTACATATC
15529023 ATATCTAAGATTACATATC
1 ATATCTAAGATTACATATC
*
15529042 ATATCTAAGATTGCATATC
1 ATATCTAAGATTACATATC
15529061 CCTGAAGATT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 51 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (19 bp):
ATATCTAAGATTACATATC
Found at i:15535574 original size:9 final size:9
Alignment explanation
Indices: 15535560--15535626 Score: 91
Period size: 9 Copynumber: 7.4 Consensus size: 9
15535550 TTTTGTTAAA
15535560 AATTAACCG
1 AATTAACCG
15535569 AATTAACCG
1 AATTAACCG
*
15535578 AATTACCCG
1 AATTAACCG
*
15535587 AATTACCCG
1 AATTAACCG
*
15535596 AATTACCCG
1 AATTAACCG
15535605 AATT-ACTCG
1 AATTAAC-CG
15535614 AATTAACCG
1 AATTAACCG
15535623 AATT
1 AATT
15535627 GAATCACTAC
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
8 1 0.02
9 51 0.94
10 2 0.04
ACGTcount: A:0.39, C:0.25, G:0.10, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:15537246 original size:20 final size:20
Alignment explanation
Indices: 15537223--15537263 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15537213 AATTCTGATG
15537223 GCTTGTCCACAATATTGGCA
1 GCTTGTCCACAATATTGGCA
***
15537243 GCTTGTTTGCAATATTGGCA
1 GCTTGTCCACAATATTGGCA
15537263 G
1 G
15537264 TTTATCTGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (20 bp):
GCTTGTCCACAATATTGGCA
Found at i:15537273 original size:20 final size:20
Alignment explanation
Indices: 15537232--15537279 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
15537222 GGCTTGTCCA
* *
15537232 CAATATTGGCAGCTTGTTTG
1 CAATATTGGCAGCTTATCTG
*
15537252 CAATATTGGCAGTTTATCTG
1 CAATATTGGCAGCTTATCTG
*
15537272 CATTATTG
1 CAATATTG
15537280 CTGGCTTGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.42
Consensus pattern (20 bp):
CAATATTGGCAGCTTATCTG
Found at i:15537325 original size:40 final size:39
Alignment explanation
Indices: 15537281--15537373 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 39
15537271 GCATTATTGC
*
15537281 TGGCTTGTCCACATTACTAGTAGCTCGTT-TGCAATACTAG
1 TGGCTTGTCCACATT-CTAGCAG-TCGTTCTGCAATACTAG
* ** * *
15537321 TGGCTTGTACACAATTCTAGCAGTTTTTCTGCATTACTGG
1 TGGCTTGTCCAC-ATTCTAGCAGTCGTTCTGCAATACTAG
15537361 TGGCTTGTCCACA
1 TGGCTTGTCCACA
15537374 AACTGGTGTG
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
39 4 0.09
40 37 0.84
41 3 0.07
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (39 bp):
TGGCTTGTCCACATTCTAGCAGTCGTTCTGCAATACTAG
Found at i:15562871 original size:16 final size:16
Alignment explanation
Indices: 15562850--15562882 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
15562840 AATTGAGCTG
15562850 ATTTTTCTCAACCAAC
1 ATTTTTCTCAACCAAC
15562866 ATTTTTCTCAACCAAC
1 ATTTTTCTCAACCAAC
15562882 A
1 A
15562883 CTTTCTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTTTTCTCAACCAAC
Found at i:15562887 original size:15 final size:16
Alignment explanation
Indices: 15562853--15562888 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
15562843 TGAGCTGATT
*
15562853 TTTCTCAACCAACATT
1 TTTCTCAACCAACATC
15562869 TTTCTCAACCAACA-C
1 TTTCTCAACCAACATC
15562884 TTTCT
1 TTTCT
15562889 TCTATCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.39
Consensus pattern (16 bp):
TTTCTCAACCAACATC
Found at i:15564426 original size:5 final size:5
Alignment explanation
Indices: 15564416--15564442 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15564406 CGTGTTAAAC
15564416 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
15564443 CTGTCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:15568985 original size:15 final size:14
Alignment explanation
Indices: 15568962--15568997 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
15568952 CAAATTTCAC
*
15568962 TATTTTGTCTTTTG
1 TATTTTGTCTTTTA
15568976 TATTTATGTCTTTTA
1 TATTT-TGTCTTTTA
15568991 TATTTTG
1 TATTTTG
15568998 CATGCATAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (14 bp):
TATTTTGTCTTTTA
Found at i:15570174 original size:19 final size:19
Alignment explanation
Indices: 15570150--15570192 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
15570140 AATTTTAATT
15570150 TTAATCAAATAAAATAAAA
1 TTAATCAAATAAAATAAAA
* *
15570169 TTAATCAAATCAATTAAAA
1 TTAATCAAATAAAATAAAA
15570188 TTAAT
1 TTAAT
15570193 ATGATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAATCAAATAAAATAAAA
Found at i:15570605 original size:17 final size:17
Alignment explanation
Indices: 15570583--15570657 Score: 63
Period size: 17 Copynumber: 4.5 Consensus size: 17
15570573 ATTTTAATAG
15570583 TTTAATATTAAATTTAA
1 TTTAATATTAAATTTAA
*
15570600 TTT-A-A-T--ACTTAA
1 TTTAATATTAAATTTAA
15570612 TTTAATATTAAAGTGGTT-A
1 TTTAATATTAAA-T--TTAA
15570631 TTGTAATATTAAATTTAA
1 TT-TAATATTAAATTTAA
15570649 TTTAATATT
1 TTTAATATT
15570658 TATCTTGTAG
Statistics
Matches: 46, Mismatches: 2, Indels: 20
0.68 0.03 0.29
Matches are distributed among these distances:
12 8 0.17
13 1 0.02
14 2 0.04
15 2 0.04
16 1 0.02
17 13 0.28
18 3 0.07
19 4 0.09
20 12 0.26
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.52
Consensus pattern (17 bp):
TTTAATATTAAATTTAA
Found at i:15570761 original size:58 final size:60
Alignment explanation
Indices: 15570634--15570774 Score: 148
Period size: 58 Copynumber: 2.4 Consensus size: 60
15570624 GTGGTTATTG
* * * *
15570634 TAAT-ATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTCTATTAATTTAATAGAT
1 TAATGATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATATTAATATAATA-AT
* *
15570694 TTATTATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATATAAT-AT
1 TAATGATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATATTAATATAATAAT
*
15570750 TAAAGTGATTAAGTTTAATCATAAT
1 T-AA-TGATTAAATTTAATC-TAAT
15570775 TGAACTCTCT
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
56 3 0.04
57 1 0.01
58 33 0.48
59 5 0.07
60 4 0.06
61 23 0.33
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.49
Consensus pattern (60 bp):
TAATGATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATATTAATATAATAAT
Found at i:15575573 original size:30 final size:31
Alignment explanation
Indices: 15575539--15575596 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
15575529 ATTTTTTTTA
*
15575539 CTATTTTCTTGTTTTTTT-ACTGTTTTGTTG
1 CTATTTTCTTGTTTTTTTCACTATTTTGTTG
15575569 CTATTTTCTTGTTTTTTTCACTATTTTG
1 CTATTTTCTTGTTTTTTTCACTATTTTG
15575597 CTACCATTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.09, C:0.12, G:0.10, T:0.69
Consensus pattern (31 bp):
CTATTTTCTTGTTTTTTTCACTATTTTGTTG
Found at i:15578779 original size:21 final size:21
Alignment explanation
Indices: 15578753--15578802 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
15578743 GTGGGTATTG
15578753 CGATACCCTAAAAAGATATCA
1 CGATACCCTAAAAAGATATCA
* *
15578774 CGATACCCTAAAAGGATATCG
1 CGATACCCTAAAAAGATATCA
15578795 CGATACCC
1 CGATACCC
15578803 CTATAGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.40, C:0.28, G:0.14, T:0.18
Consensus pattern (21 bp):
CGATACCCTAAAAAGATATCA
Found at i:15585746 original size:40 final size:41
Alignment explanation
Indices: 15585617--15585752 Score: 154
Period size: 40 Copynumber: 3.4 Consensus size: 41
15585607 CGTTTGGACA
* * * *
15585617 AAAAACGCCACTAAAAATCGAGCATTAGCGGCG-CTTAACG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTTAGG
* * *
15585657 TAAAACGCCGCTAAAGATCGAGCATTAGCGGCGTTTCTAGG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTTAGG
* * *
15585698 -AAAGCGCCGCTAAAAAT-TAGCATTAGCGGCGTTTTTTGG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTTAGG
15585737 AAAAACGCCGC-AAAAA
1 AAAAACGCCGCTAAAAA
15585753 GTCTAAGCCC
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 24 0.30
40 54 0.67
41 3 0.04
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTTAGG
Found at i:15585979 original size:41 final size:41
Alignment explanation
Indices: 15585909--15586084 Score: 253
Period size: 41 Copynumber: 4.3 Consensus size: 41
15585899 NNNNNNNNAG
* * *
15585909 TCTTTAGCGGCGCTTTTTGAGAAAGCGCCGCTAATGCTCAGA
1 TCTTTAGCGGC-ATTTTTAAAAAAGCGCCGCTAATGCTCAGA
*
15585951 TCTTTAGCGGCATTTTTAAAAAAACGCCGCTAATGCTCAGA
1 TCTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTCAGA
* * * *
15585992 TCTTTAGCGGCATTTTTGAGAAAGCACCACTAATGCTCAGA
1 TCTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTCAGA
**
15586033 TCTTTAGCGGTGTTTTTAAAAAAGCGCCGCTAATGCTCAGA
1 TCTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTCAGA
15586074 TCTTTAGCGGC
1 TCTTTAGCGGC
15586085 TACCATTATT
Statistics
Matches: 118, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
41 107 0.91
42 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (41 bp):
TCTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTCAGA
Found at i:15586049 original size:82 final size:83
Alignment explanation
Indices: 15585909--15586084 Score: 291
Period size: 82 Copynumber: 2.1 Consensus size: 83
15585899 NNNNNNNNAG
* * *
15585909 TCTTTAGCGGCGCTTTTTGAGAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCATTTTTAAAAAA
1 TCTTTAGCGGCGATTTTTGAGAAAGCACCACTAATGCTCAGATCTTTAGCGGCATTTTTAAAAAA
15585974 ACGCCGCTAATGCTCAGA
66 ACGCCGCTAATGCTCAGA
**
15585992 TCTTTAGCGGC-ATTTTTGAGAAAGCACCACTAATGCTCAGATCTTTAGCGGTGTTTTTAAAAAA
1 TCTTTAGCGGCGATTTTTGAGAAAGCACCACTAATGCTCAGATCTTTAGCGGCATTTTTAAAAAA
*
15586056 GCGCCGCTAATGCTCAGA
66 ACGCCGCTAATGCTCAGA
15586074 TCTTTAGCGGC
1 TCTTTAGCGGC
15586085 TACCATTATT
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 76 0.87
83 11 0.13
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (83 bp):
TCTTTAGCGGCGATTTTTGAGAAAGCACCACTAATGCTCAGATCTTTAGCGGCATTTTTAAAAAA
ACGCCGCTAATGCTCAGA
Found at i:15586343 original size:14 final size:15
Alignment explanation
Indices: 15586316--15586347 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
15586306 AGGTTTATAA
15586316 ATTATGGAATTAGGG
1 ATTATGGAATTAGGG
15586331 ATTATGG-ATTAGGG
1 ATTATGGAATTAGGG
15586345 ATT
1 ATT
15586348 CTAATTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (15 bp):
ATTATGGAATTAGGG
Found at i:15586446 original size:29 final size:26
Alignment explanation
Indices: 15586397--15586459 Score: 65
Period size: 29 Copynumber: 2.3 Consensus size: 26
15586387 GATAGGGGTA
15586397 AGGG-TTAGAGATTAAGAGTTAGGAATTT
1 AGGGTTTAGAGATTAAGAGTTA-G--TTT
* * *
15586425 AGGGTTTATAGATTTAGTGTTAGTTT
1 AGGGTTTAGAGATTAAGAGTTAGTTT
15586451 AGGGTTTAG
1 AGGGTTTAG
15586460 GGTTTAGATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 11 0.37
28 5 0.17
29 14 0.47
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.40
Consensus pattern (26 bp):
AGGGTTTAGAGATTAAGAGTTAGTTT
Found at i:15587782 original size:145 final size:143
Alignment explanation
Indices: 15587506--15587791 Score: 520
Period size: 145 Copynumber: 2.0 Consensus size: 143
15587496 NNNNNNNNNA
*
15587506 TTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTCTGTAAAAAACGCCGCAATAGATAAGCAAT
1 TTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTCTGTAAAAAACGCCGCAATAGATAAACAAT
15587571 AGCGGCGTTTTTATAAAAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAGCGCCATTT
66 AGCGGCGTTTTTAT-AAAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAGCGCCATTT
15587636 TTTTAAATTCCCTCG
130 TTTT-AATTCCCTCG
*
15587651 TTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTGTGTAAAAAACGCCGCAATAGATAAACAAT
1 TTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTCTGTAAAAAACGCCGCAATAGATAAACAAT
15587716 AGCGGCGTTTTTAT-AAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAGCGCCATTTT
66 AGCGGCGTTTTTATAAAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAGCGCCA-TTT
15587780 TTTTAATTCCCT
130 TTTTAATTCCCT
15587792 ACCCCCCTCC
Statistics
Matches: 138, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
143 54 0.39
144 7 0.05
145 77 0.56
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (143 bp):
TTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTCTGTAAAAAACGCCGCAATAGATAAACAAT
AGCGGCGTTTTTATAAAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAGCGCCATTTT
TTTAATTCCCTCG
Found at i:15590001 original size:12 final size:12
Alignment explanation
Indices: 15589984--15590013 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
15589974 ATTCATCAGC
15589984 AATTTGCTTTAA
1 AATTTGCTTTAA
15589996 AATTTGCTTTAA
1 AATTTGCTTTAA
15590008 AATTTG
1 AATTTG
15590014 ATCTGTCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (12 bp):
AATTTGCTTTAA
Found at i:15590860 original size:37 final size:37
Alignment explanation
Indices: 15590810--15590885 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
15590800 GATTCTATTG
15590810 TATTTATACTGCATGGCTGCACAATGTATTTCTTAAC
1 TATTTATACTGCATGGCTGCACAATGTATTTCTTAAC
* *
15590847 TATTTATATTGCATGGCTGCACCATGTATTTCTTAAC
1 TATTTATACTGCATGGCTGCACAATGTATTTCTTAAC
15590884 TA
1 TA
15590886 GTTTGATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.42
Consensus pattern (37 bp):
TATTTATACTGCATGGCTGCACAATGTATTTCTTAAC
Found at i:15594338 original size:24 final size:24
Alignment explanation
Indices: 15594306--15594354 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
15594296 TATACTCGCA
15594306 CGCCTTATGTTCCTATCTTATAAT
1 CGCCTTATGTTCCTATCTTATAAT
*
15594330 CGCCTTATGTTCTTATCTTATAAT
1 CGCCTTATGTTCCTATCTTATAAT
15594354 C
1 C
15594355 TTACTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.47
Consensus pattern (24 bp):
CGCCTTATGTTCCTATCTTATAAT
Found at i:15600853 original size:3 final size:3
Alignment explanation
Indices: 15600845--15600871 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
15600835 GTTACATGCA
15600845 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
15600872 GTAAGAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:15605335 original size:19 final size:19
Alignment explanation
Indices: 15605313--15605350 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
15605303 CAAAACAAAA
15605313 AATCTTAAACAAAAGTAAT
1 AATCTTAAACAAAAGTAAT
15605332 AATCTTAAACAAAAGTAAT
1 AATCTTAAACAAAAGTAAT
15605351 TGAGAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.26
Consensus pattern (19 bp):
AATCTTAAACAAAAGTAAT
Found at i:15611510 original size:13 final size:13
Alignment explanation
Indices: 15611477--15611510 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
15611467 GACCTTAAAA
15611477 AACTC-AAATACC
1 AACTCAAAATACC
15611489 AAC-CAAAATACC
1 AACTCAAAATACC
15611501 AACTCAAAAT
1 AACTCAAAAT
15611511 GACATTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 1 0.05
12 13 0.65
13 6 0.30
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (13 bp):
AACTCAAAATACC
Found at i:15612306 original size:39 final size:40
Alignment explanation
Indices: 15612213--15612316 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
15612203 AACACACCAG
* *
15612213 ACAGAAGCTCATAAGAGCTTATCCAACGTAAATATGCCAA
1 ACAGAAGCTCATAAGAGCTGATCCAACGTAAACATGCCAA
* *
15612253 ACAGAAGCTCATAAGAGCTGGTCC-ACTTGAAACATGCC-A
1 ACAGAAGCTCATAAGAGCTGATCCAACGT-AAACATGCCAA
*
15612292 ACAGAAGCTCATAAGAGTTGATCCA
1 ACAGAAGCTCATAAGAGCTGATCCA
15612317 TTCGAATCAC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
39 26 0.46
40 30 0.54
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.19
Consensus pattern (40 bp):
ACAGAAGCTCATAAGAGCTGATCCAACGTAAACATGCCAA
Found at i:15612331 original size:39 final size:40
Alignment explanation
Indices: 15612213--15612337 Score: 134
Period size: 39 Copynumber: 3.1 Consensus size: 40
15612203 AACACACCAG
*
15612213 ACAGAAGCTCATAAGAGCTT-ATCCA-ACGTAAAT-ATGCCAA
1 ACAGAAGCTCATAAGAG-TTGATCCATTCG--AATCATGCCAA
* * *
15612253 ACAGAAGCTCATAAGAGCTGGTCCACTT-GAAACATGCC-A
1 ACAGAAGCTCATAAGAGTTGATCCA-TTCGAATCATGCCAA
*
15612292 ACAGAAGCTCATAAGAGTTGATCCATTCGAATCACGCCAA
1 ACAGAAGCTCATAAGAGTTGATCCATTCGAATCATGCCAA
15612332 ACAGAA
1 ACAGAA
15612338 AGTATAACGC
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
38 2 0.03
39 35 0.49
40 33 0.46
41 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.18
Consensus pattern (40 bp):
ACAGAAGCTCATAAGAGTTGATCCATTCGAATCATGCCAA
Found at i:15621180 original size:69 final size:68
Alignment explanation
Indices: 15621037--15621168 Score: 160
Period size: 69 Copynumber: 1.9 Consensus size: 68
15621027 CAAATATGTT
* *
15621037 AAATATAAAAAAATAAAAAAAAAACATTTTAATATAATTCAATATAAAATATTATTTCCAAATTT
1 AAATATAAAAAAATAAAAAAAAAACATTTTAATATAATTCAATATAAAACATTAATT-CAAATTT
15621102 CAAA
65 CAAA
* * * * *
15621106 AAATATAAAATAAA-ATAAATAAAATATTTTAATATAATTTATTATAAAACATTAAATT-AAATT
1 AAATATAAAA-AAATAAAAAAAAAACATTTTAATATAATTCAATATAAAACATT-AATTCAAATT
15621169 AATATAAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
68 5 0.09
69 43 0.80
70 6 0.11
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.35
Consensus pattern (68 bp):
AAATATAAAAAAATAAAAAAAAAACATTTTAATATAATTCAATATAAAACATTAATTCAAATTTC
AAA
Found at i:15621184 original size:24 final size:24
Alignment explanation
Indices: 15621111--15621184 Score: 71
Period size: 23 Copynumber: 3.1 Consensus size: 24
15621101 TCAAAAAATA
* *
15621111 TAAAATAAAATAA-ATAAAATATT
1 TAAATTAAATTAATATAAAATATT
* * * *
15621134 TTAATATAATTTATTATAAAACA-T
1 TAAAT-TAAATTAATATAAAATATT
15621158 TAAATTAAATTAATATAAAATATT
1 TAAATTAAATTAATATAAAATATT
15621182 TAA
1 TAA
15621185 TAATAATCCT
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
23 17 0.45
24 14 0.37
25 7 0.18
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (24 bp):
TAAATTAAATTAATATAAAATATT
Found at i:15621210 original size:22 final size:23
Alignment explanation
Indices: 15621173--15621248 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 23
15621163 TAAATTAATA
*
15621173 TAAAATATTTAATAATAATCCTAT
1 TAAAAT-TTAAATAATAATCCTAT
*
15621197 TAAAA-TTAAATAATATTCAC-AT
1 TAAAATTTAAATAATAATC-CTAT
15621219 TAAAATTTAATAGTAATAAT-CTAT
1 TAAAATTTAA-A-TAATAATCCTAT
15621243 CTAAAA
1 -TAAAA
15621249 AAATTTTGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
22 18 0.42
23 6 0.14
24 8 0.19
25 11 0.26
ACGTcount: A:0.53, C:0.08, G:0.01, T:0.38
Consensus pattern (23 bp):
TAAAATTTAAATAATAATCCTAT
Found at i:15626572 original size:25 final size:25
Alignment explanation
Indices: 15626518--15626572 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
15626508 CCTAATGTAA
*
15626518 ATAAAAAAAAAATTCAAATCCTAAC
1 ATAAAAAAAAAATTCAAATCCAAAC
** *
15626543 ATAAAAAAAATTTTCAAATTCAAAC
1 ATAAAAAAAAAATTCAAATCCAAAC
*
15626568 CTAAA
1 ATAAA
15626573 TAGTAATTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.24
Consensus pattern (25 bp):
ATAAAAAAAAAATTCAAATCCAAAC
Found at i:15628022 original size:19 final size:19
Alignment explanation
Indices: 15627984--15628023 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15627974 AATATTCAAT
* *
15627984 ATGAATTTTTATTGTATTA
1 ATGAATTTTAATTATATTA
*
15628003 ATGAATTTTAATTATTTTA
1 ATGAATTTTAATTATATTA
15628022 AT
1 AT
15628024 TCTGTAGCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (19 bp):
ATGAATTTTAATTATATTA
Found at i:15630916 original size:17 final size:18
Alignment explanation
Indices: 15630894--15630929 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15630884 CCAAAACATC
*
15630894 AATTTTT-TATTTTAATA
1 AATTTTTATAATTTAATA
15630911 AATTTTTATAATTTAATA
1 AATTTTTATAATTTAATA
15630929 A
1 A
15630930 TGAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
AATTTTTATAATTTAATA
Found at i:15634180 original size:41 final size:41
Alignment explanation
Indices: 15634112--15634230 Score: 159
Period size: 41 Copynumber: 2.9 Consensus size: 41
15634102 GGCGCTAATG
* *
15634112 GAAAAACGCC-CAATAGGTCAAGCAGTAGCGGCATTTATGA
1 GAAAAACGCCGCAAAAGGTCAAGCAGTAGCGGCGTTTATGA
* * *
15634152 GAAAAACGCCGCAAAAGATCAAGTAGTAGCAGCGTTTATGA
1 GAAAAACGCCGCAAAAGGTCAAGCAGTAGCGGCGTTTATGA
* * *
15634193 GAAAAACACCGTAAAAGGTCAAGCAGTAGTGGCGTTTA
1 GAAAAACGCCGCAAAAGGTCAAGCAGTAGCGGCGTTTA
15634231 ACGCCTTAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 10 0.15
41 57 0.85
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (41 bp):
GAAAAACGCCGCAAAAGGTCAAGCAGTAGCGGCGTTTATGA
Found at i:15642531 original size:12 final size:12
Alignment explanation
Indices: 15642514--15642544 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15642504 TTTAGTTATA
15642514 AATGGAGGTGAG
1 AATGGAGGTGAG
*
15642526 AATGGAGTTGAG
1 AATGGAGGTGAG
15642538 AATGGAG
1 AATGGAG
15642545 CATGCTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.45, T:0.19
Consensus pattern (12 bp):
AATGGAGGTGAG
Found at i:15642630 original size:21 final size:23
Alignment explanation
Indices: 15642585--15642632 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
15642575 TTGCAAACTG
*
15642585 TTAAAGCCTTCATTGTCCTATAT
1 TTAAAGCCTTCATTCTCCTATAT
*
15642608 TTAAAGCCTTCATTCTCATAT-T
1 TTAAAGCCTTCATTCTCCTATAT
15642630 TTA
1 TTA
15642633 TTTGCAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.27, C:0.21, G:0.06, T:0.46
Consensus pattern (23 bp):
TTAAAGCCTTCATTCTCCTATAT
Found at i:15643698 original size:13 final size:13
Alignment explanation
Indices: 15643682--15643708 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15643672 TAATTAAAGG
15643682 GTTAAAATTTAAA
1 GTTAAAATTTAAA
15643695 GTTAAAATTTAAA
1 GTTAAAATTTAAA
15643708 G
1 G
15643709 ATGATAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:15643754 original size:35 final size:35
Alignment explanation
Indices: 15643709--15643775 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
15643699 AAATTTAAAG
*
15643709 ATGATAATCATATCTTACATAAACATTTAAAGTTT
1 ATGATAATCATAACTTACATAAACATTTAAAGTTT
*
15643744 ATGATTATCATAACTTACATAAACATTTAAAG
1 ATGATAATCATAACTTACATAAACATTTAAAG
15643776 AATAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (35 bp):
ATGATAATCATAACTTACATAAACATTTAAAGTTT
Found at i:15643810 original size:9 final size:9
Alignment explanation
Indices: 15643796--15643935 Score: 141
Period size: 9 Copynumber: 16.0 Consensus size: 9
15643786 AACTTTGGAT
15643796 CATAACTTA
1 CATAACTTA
15643805 CATAACTTA
1 CATAACTTA
15643814 CATAA--TA
1 CATAACTTA
15643821 CATAACTTA
1 CATAACTTA
*
15643830 CATAACCTA
1 CATAACTTA
15643839 CATAACTTA
1 CATAACTTA
15643848 CATAACTTA
1 CATAACTTA
15643857 CATAA-TT-
1 CATAACTTA
*
15643864 CATAAATATA
1 CATAACT-TA
*
15643874 CAT--CATA
1 CATAACTTA
15643881 TCATAACTTA
1 -CATAACTTA
15643891 CATAACTTA
1 CATAACTTA
*
15643900 CATAA-ATA
1 CATAACTTA
* * *
15643908 TATATCATA
1 CATAACTTA
15643917 TCATAACTTA
1 -CATAACTTA
15643927 CATAACTTA
1 CATAACTTA
15643936 ATTATACTTG
Statistics
Matches: 110, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
7 14 0.13
8 11 0.10
9 73 0.66
10 12 0.11
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:15643834 original size:34 final size:35
Alignment explanation
Indices: 15643797--15643935 Score: 128
Period size: 34 Copynumber: 4.0 Consensus size: 35
15643787 ACTTTGGATC
15643797 ATAACTTACATAACTTACATAA--TACATAACTTAC
1 ATAACTTACATAAC-TACATAACTTACATAACTTAC
*
15643831 ATAACCTACATAACTTACATAACTTACATAA-TT-C
1 ATAACTTACATAAC-TACATAACTTACATAACTTAC
* *
15643865 ATAAATATACATCA-TATCATAACTTACATAACTTAC
1 ATAACT-TACATAACTA-CATAACTTACATAACTTAC
* * *
15643901 ATAA-ATATATATCATATCATAACTTACATAACTTA
1 ATAACTTACATAAC-TA-CATAACTTACATAACTTA
15643936 ATTATACTTG
Statistics
Matches: 89, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
33 2 0.02
34 44 0.49
35 10 0.11
36 33 0.37
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (35 bp):
ATAACTTACATAACTACATAACTTACATAACTTAC
Found at i:15643857 original size:43 final size:43
Alignment explanation
Indices: 15643796--15643935 Score: 167
Period size: 43 Copynumber: 3.2 Consensus size: 43
15643786 AACTTTGGAT
*
15643796 CATAACTTACATAACTTACATAATACATAACTTACATAACCTA
1 CATAACTTACATAACTTACATAATACATAACTTACATAACATA
* *
15643839 CATAACTTACATAACTTACATAATTCATAAATATACAT--CATA
1 CATAACTTACATAACTTACATAATACATAACT-TACATAACATA
* * * *
15643881 TCATAACTTACATAACTTACATAAATATATATCATATCATAACTTA
1 -CATAACTTACATAACTTACAT-AATACATAACTTA-CATAACATA
15643927 CATAACTTA
1 CATAACTTA
15643936 ATTATACTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
42 3 0.04
43 53 0.65
44 14 0.17
45 9 0.11
46 3 0.04
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (43 bp):
CATAACTTACATAACTTACATAATACATAACTTACATAACATA
Found at i:15643915 original size:36 final size:36
Alignment explanation
Indices: 15643819--15643935 Score: 159
Period size: 36 Copynumber: 3.3 Consensus size: 36
15643809 ACTTACATAA
* * * *
15643819 TACATAACTTACATAACCTACATAACTTA-CATAACT
1 TACATAACTTACATAA-ATATATATCATATCATAACT
*
15643855 TACATAA-TT-CATAAATATACATCATATCATAACT
1 TACATAACTTACATAAATATATATCATATCATAACT
15643889 TACATAACTTACATAAATATATATCATATCATAACT
1 TACATAACTTACATAAATATATATCATATCATAACT
15643925 TACATAACTTA
1 TACATAACTTA
15643936 ATTATACTTG
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
33 7 0.10
34 19 0.26
35 4 0.06
36 42 0.58
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (36 bp):
TACATAACTTACATAAATATATATCATATCATAACT
Found at i:15643996 original size:7 final size:7
Alignment explanation
Indices: 15643984--15644015 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
15643974 ACACCCATTA
15643984 GATACTT
1 GATACTT
15643991 GATACTT
1 GATACTT
15643998 GATACTT
1 GATACTT
*
15644005 GATAATT
1 GATACTT
15644012 GATA
1 GATA
15644016 TGTACTATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (7 bp):
GATACTT
Found at i:15649491 original size:66 final size:65
Alignment explanation
Indices: 15649379--15649516 Score: 181
Period size: 66 Copynumber: 2.1 Consensus size: 65
15649369 GCAAATTGCT
* *
15649379 CAACTTAAAGTGGAGGCAGCATCGAGAGAAGTAGAGGCTCAAAGAAAATATGAAGAACTCCAGCT
1 CAACTTAAAGTGGAGACAGCATCAAGAGAAGTAGAGGC-CAAAGAAAATATGAAGAACTCCAGCT
15649444 A
65 A
* *
15649445 CAACTTAAAGTGGAGACAGCAAT-AAGGGAAGTAGAGG-CAAGCAGAAAATATGACGAACTCCAG
1 CAACTTAAAGTGGAGACAGC-ATCAAGAGAAGTAGAGGCCAA--AGAAAATATGAAGAACTCCAG
*
15649508 CTG
63 CTA
15649511 CAACTT
1 CAACTT
15649517 CAAAATATGA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
64 3 0.05
66 59 0.92
67 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.15
Consensus pattern (65 bp):
CAACTTAAAGTGGAGACAGCATCAAGAGAAGTAGAGGCCAAAGAAAATATGAAGAACTCCAGCTA
Done.