Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 57 of 141
Found at i:18633805 original size:23 final size:22
Alignment explanation
Indices: 18633766--18633828 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
18633756 TTATGTATTT
*
18633766 ATTTATT-TTATATAATAACGAAA
1 ATTTATTATT-TAAAATAA-GAAA
*
18633789 ATTTATTATTTAAAATAATAAA
1 ATTTATTATTTAAAATAAGAAA
* **
18633811 ATTTGTTAAATAAAATAA
1 ATTTATTATTTAAAATAA
18633829 ATCAAAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 18 0.53
23 14 0.41
24 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (22 bp):
ATTTATTATTTAAAATAAGAAA
Found at i:18633814 original size:22 final size:22
Alignment explanation
Indices: 18633786--18633828 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
18633776 TATAATAACG
**
18633786 AAAATTTATTATTTAAAATAAT
1 AAAATTTATTAAATAAAATAAT
*
18633808 AAAATTTGTTAAATAAAATAA
1 AAAATTTATTAAATAAAATAA
18633829 ATCAAAAGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AAAATTTATTAAATAAAATAAT
Found at i:18639314 original size:27 final size:26
Alignment explanation
Indices: 18639265--18639320 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
18639255 CTATTTTTTT
* *
18639265 AATAAACACAAAAAAATTATTTAAAA
1 AATAAAAACAAAAAAAGTATTTAAAA
* *
18639291 AATAAAAATAAAAAAAGTATTTTAAA
1 AATAAAAACAAAAAAAGTATTTAAAA
18639317 AATA
1 AATA
18639321 TTTTAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (26 bp):
AATAAAAACAAAAAAAGTATTTAAAA
Found at i:18640008 original size:20 final size:20
Alignment explanation
Indices: 18639964--18640014 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
18639954 TATATAATTT
*
18639964 TTAAAAAAATTATATAATACA
1 TTAAAAAAA-TATATAAAACA
18639985 -TAAAAAAATACTA-AAAACA
1 TTAAAAAAATA-TATAAAACA
18640004 TTAAAATAAAT
1 TTAAAA-AAAT
18640015 GTTTCCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 7 0.27
20 15 0.58
21 4 0.15
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (20 bp):
TTAAAAAAATATATAAAACA
Found at i:18642186 original size:31 final size:31
Alignment explanation
Indices: 18642148--18642211 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
18642138 CATACTTACA
*
18642148 AAATTTAATAACTCCACTACCACAGAATGAG
1 AAATTTAATAACTCCACTACCACAAAATGAG
18642179 AAATTTAATAACTCCACTACCACAAAATGAG
1 AAATTTAATAACTCCACTACCACAAAATGAG
18642210 AA
1 AA
18642212 TATAGATCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.22, G:0.08, T:0.22
Consensus pattern (31 bp):
AAATTTAATAACTCCACTACCACAAAATGAG
Found at i:18646733 original size:13 final size:13
Alignment explanation
Indices: 18646717--18646743 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18646707 TTTCCATAGC
18646717 ACTTTTCAAAAAT
1 ACTTTTCAAAAAT
18646730 ACTTTTCAAAAAT
1 ACTTTTCAAAAAT
18646743 A
1 A
18646744 ATGAAGAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (13 bp):
ACTTTTCAAAAAT
Found at i:18654607 original size:24 final size:24
Alignment explanation
Indices: 18654557--18654608 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
18654547 AATCAAAGTC
** **
18654557 AAATATATTATGTTAATAAATGTT
1 AAATATATTATACTAATAAATACT
*
18654581 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
18654605 AAAT
1 AAAT
18654609 TTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:18657729 original size:25 final size:25
Alignment explanation
Indices: 18657658--18657729 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 25
18657648 AATTTTCTTG
** *
18657658 AAATTTTACCGGGAGTAAAATCGTCA
1 AAATTTTACTAGG-GTAAAATCATCA
*
18657684 AATTTTTACTAAGGGTAAAATCATCA
1 AAATTTTACT-AGGGTAAAATCATCA
18657710 AAATTTTACTAGGGTAAAAT
1 AAATTTTACTAGGGTAAAAT
18657730 TAGGATGAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
25 10 0.25
26 28 0.70
27 2 0.05
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (25 bp):
AAATTTTACTAGGGTAAAATCATCA
Found at i:18672467 original size:93 final size:93
Alignment explanation
Indices: 18672345--18672612 Score: 527
Period size: 93 Copynumber: 2.9 Consensus size: 93
18672335 ATAGATCTTG
18672345 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
1 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
18672410 ACAGATTATGTATGCATACCTAAATTCA
66 ACAGATTATGTATGCATACCTAAATTCA
18672438 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
1 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
18672503 ACAGATTATGTATGCATACCTAAATTCA
66 ACAGATTATGTATGCATACCTAAATTCA
18672531 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
1 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
*
18672596 ACAGACTATGTATGCAT
66 ACAGATTATGTATGCAT
18672613 GACCCATATA
Statistics
Matches: 174, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 174 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (93 bp):
AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
ACAGATTATGTATGCATACCTAAATTCA
Found at i:18678034 original size:21 final size:21
Alignment explanation
Indices: 18678009--18678055 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
18677999 CATCAACAAT
18678009 TGATGAGACTTTGGGTACTCA
1 TGATGAGACTTTGGGTACTCA
18678030 TGATGAGACTTTGGGTACTCA
1 TGATGAGACTTTGGGTACTCA
18678051 TGATG
1 TGATG
18678056 GGGAAAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.13, G:0.30, T:0.34
Consensus pattern (21 bp):
TGATGAGACTTTGGGTACTCA
Found at i:18684692 original size:20 final size:20
Alignment explanation
Indices: 18684659--18684712 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
18684649 GGGTTTAGGA
* *
18684659 TTTAAGGTTGAAGGTTCAAG
1 TTTAGGGTTCAAGGTTCAAG
*
18684679 TTTGGGGTTCAAGGTTCAAG
1 TTTAGGGTTCAAGGTTCAAG
*
18684699 TTTAGTGTTCAAGG
1 TTTAGGGTTCAAGG
18684713 GTTTGGGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.07, G:0.31, T:0.37
Consensus pattern (20 bp):
TTTAGGGTTCAAGGTTCAAG
Found at i:18687909 original size:28 final size:29
Alignment explanation
Indices: 18687851--18687910 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
18687841 TGCATATATT
* *
18687851 TATTATATATAATAAAACCCACACATATA
1 TATTATATATAACAAAACCCACACAAATA
* *
18687880 TATTATATATAGCAAAA-CCACGCAAATA
1 TATTATATATAACAAAACCCACACAAATA
18687908 TAT
1 TAT
18687911 GCAGTATGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (29 bp):
TATTATATATAACAAAACCCACACAAATA
Found at i:18689633 original size:14 final size:13
Alignment explanation
Indices: 18689585--18689633 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
18689575 TCTCTTGAGC
*
18689585 CCACAATATAATA
1 CCACAATCTAATA
18689598 CC-CAATCTAATA
1 CCACAATCTAATA
18689610 CCACAATCTAATA
1 CCACAATCTAATA
*
18689623 CACATAATCTA
1 C-CACAATCTA
18689634 TCTCTTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
12 11 0.34
13 13 0.41
14 8 0.25
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (13 bp):
CCACAATCTAATA
Found at i:18693944 original size:5 final size:5
Alignment explanation
Indices: 18693934--18693958 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18693924 TTCTATACTG
18693934 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
18693959 GGTCCGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:18695982 original size:19 final size:19
Alignment explanation
Indices: 18695958--18695999 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
18695948 GAGTTGTCTT
18695958 AAAAGAGTAAAAAAATCCA
1 AAAAGAGTAAAAAAATCCA
18695977 AAAAGAGTAAAAAAATCCA
1 AAAAGAGTAAAAAAATCCA
18695996 AAAA
1 AAAA
18696000 TCTTGGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (19 bp):
AAAAGAGTAAAAAAATCCA
Found at i:18710608 original size:5 final size:5
Alignment explanation
Indices: 18710598--18710622 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18710588 TTCTATATTC
18710598 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
18710623 TGTCTGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:18711730 original size:33 final size:33
Alignment explanation
Indices: 18711686--18711851 Score: 197
Period size: 33 Copynumber: 5.0 Consensus size: 33
18711676 TCAACACAAG
*
18711686 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
* * *
18711719 TGATTGAAACATCTATCAGGGTAGCTTTATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
* *
18711752 TGATTGGGACATCTATCAAGGCAGCTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
* ** * *
18711785 TGAGTGGAACATCTATTGGGGTAGTTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
* * * *
18711818 TGATTGCAGCATCTATCGGGGCAACTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
18711851 T
1 T
18711852 CTATTCGACT
Statistics
Matches: 110, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 110 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAT
Found at i:18717632 original size:131 final size:132
Alignment explanation
Indices: 18717394--18717781 Score: 602
Period size: 131 Copynumber: 3.0 Consensus size: 132
18717384 CAGTGCAACT
* ** * *
18717394 TCAGGGAGATAAGG-CTAGTGGCTTAAA-CTGCTTCCCTACTACCTCGAAAAGGTAAGACTCGCC
1 TCAGGGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGACTCACC
* *
18717457 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACCAC
65 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACCAC
*
18717522 TGG
130 TGC
* *
18717525 TCAGGGAGATAGGACTGGTGGCTTAAATCTG-TTTCCTACTATCTCGGGAAGATAAGACTCACCG
1 TCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGACTCACCG
*
18717589 TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTACT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACCACT
18717654 GC
131 GC
* * * * *
18717656 TCAGAGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAGGATAAGATTCACTG
1 TCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGACTCACCG
18717721 TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCAC
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCAC
18717782 TGTAAACTCA
Statistics
Matches: 236, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
130 3 0.01
131 142 0.60
132 91 0.39
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (132 bp):
TCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGACTCACCG
TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACCACT
GC
Found at i:18717650 original size:44 final size:44
Alignment explanation
Indices: 18717600--18717782 Score: 122
Period size: 44 Copynumber: 4.2 Consensus size: 44
18717590 CTTTGATCTG
18717600 CTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTA
* * * ***** * * *
18717644 CTCCACTACTGCTCAGAGAGATAGGA-CTGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTA
* * * ** ** * *
18717687 CTTCC-CTACTACCTT-GGGAGGATAAGAT-TCACTGTCTTTGATCTG
1 C-TCCACTACT-GCTTAGGGA-GACAGGATCT-ACAATCTTCAACCTA
18717732 CTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTA
18717776 CTCCACT
1 CTCCACT
18717783 GTAAACTCAG
Statistics
Matches: 102, Mismatches: 29, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
43 18 0.18
44 63 0.62
45 21 0.21
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTA
Found at i:18717907 original size:89 final size:89
Alignment explanation
Indices: 18717785--18718157 Score: 422
Period size: 89 Copynumber: 4.2 Consensus size: 89
18717775 ACTCCACTGT
* * * * * *
18717785 AAACTCAGAGAGGCAAGGCTGGTGTTTTTGATCTGCTTCACTGCCAGTAAAGGAAGACAAGATCC
1 AAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGACAAGATCT
* *
18717850 GCTATTTTCACTCTGCTCCGCTAC
66 GCTATATTCAGTCTGCTCCGCTAC
* * * *
18717874 AAAGTCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGCCAATACAGAAAGACAAGATCT
1 AAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGACAAGATCT
*
18717939 GCTATCTTCAGTCTGCTCCGCTAC
66 GCTATATTCAGTCTGCTCCGCTAC
* * * * * * * *
18717963 AAACTTAGGAAGACAAGGCTGTTATCTTCGATCTGTTTCACTGCCAATATAGGATGACAAGATCT
1 AAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGACAAGATCT
* * **
18718028 GCTATATTCAGTCTACTCTGCTGT
66 GCTATATTCAGTCTGCTCCGCTAC
* * * *
18718052 AAACTCAGGGACGCAAGGTTGGTGTCTTTGATCTGCTTCGCTGCCAATACAGGAAGACAAGATCT
1 AAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGACAAGATCT
* * * * * * *
18718117 GTTATCTTTAGTCTACCCCGTTGC
66 GCTATATTCAGTCTGCTCCGCTAC
18718141 AAACTCAGGGAGGCAAG
1 AAACTCAGGGAGGCAAG
18718158 ACTTGTAACT
Statistics
Matches: 235, Mismatches: 49, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
89 235 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (89 bp):
AAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGACAAGATCT
GCTATATTCAGTCTGCTCCGCTAC
Found at i:18717976 original size:45 final size:45
Alignment explanation
Indices: 18717835--18718041 Score: 115
Period size: 44 Copynumber: 4.6 Consensus size: 45
18717825 CTGCCAGTAA
* * * * *
18717835 AGGAAGACAAGATCCGCTATTTTCACTCTGCTCCGCTACAAAGTC
1 AGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTACAAACTT
* * * * * *
18717880 AGGGAGGCAAG-GCTAG-TGTCTTC-GATCTGCTTCGCTGCCAATAC--
1 AGGAAGACAAGATCT-GCTATCTTCAG-TCTGCTCCGCT-ACAA-ACTT
*
18717924 AGAAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTACAAACTT
1 AGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTACAAACTT
* * * * * * *
18717969 AGGAAGACAAG-GCTGTTATCTTC-GATCTGTTTCACTGCCAA-TAT
1 AGGAAGACAAGATCTGCTATCTTCAG-TCTGCTCCGCTACAAACT-T
* *
18718013 AGGATGACAAGATCTGCTATATTCAGTCT
1 AGGAAGACAAGATCTGCTATCTTCAGTCT
18718042 ACTCTGCTGT
Statistics
Matches: 120, Mismatches: 29, Indels: 26
0.69 0.17 0.15
Matches are distributed among these distances:
43 4 0.03
44 60 0.50
45 53 0.44
46 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (45 bp):
AGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTACAAACTT
Found at i:18718016 original size:44 final size:45
Alignment explanation
Indices: 18717898--18718032 Score: 132
Period size: 45 Copynumber: 3.0 Consensus size: 45
18717888 AAGGCTAGTG
* * *
18717898 TCTTCGATCTGCTTCGCTGCCAATACAGAAAGACAAGATCTGCTA
1 TCTTCGATCTGCTTCGCTGCCAATATAGGAAGACAAGAGCTGCTA
* * * *
18717943 TCTTC-AGTCTGCTCCGCTACAAACT-TAGGAAGACAAG-GCTGTTA
1 TCTTCGA-TCTGCTTCGCTGCCAA-TATAGGAAGACAAGAGCTGCTA
* * * *
18717987 TCTTCGATCTGTTTCACTGCCAATATAGGATGACAAGATCTGCTA
1 TCTTCGATCTGCTTCGCTGCCAATATAGGAAGACAAGAGCTGCTA
18718032 T
1 T
18718033 ATTCAGTCTA
Statistics
Matches: 70, Mismatches: 15, Indels: 10
0.74 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 33 0.47
45 35 0.50
46 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
TCTTCGATCTGCTTCGCTGCCAATATAGGAAGACAAGAGCTGCTA
Found at i:18718377 original size:177 final size:178
Alignment explanation
Indices: 18718155--18718554 Score: 520
Period size: 177 Copynumber: 2.3 Consensus size: 178
18718145 TCAGGGAGGC
** * *
18718155 AAGACTTGTAACTTTAATTTGCTCCACTGCAACTTCAGAGAGATAGGATTATTGGCTTTAATCTG
1 AAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGAATTATTGGCTTTAATCTA
* * * * * * * * *
18718220 CTCCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCTGTCCGCCTCACTGCAGCTTTA-GGG
66 CTACACTGCAACCTCAGGGAGATAAGATTCGCCATCTTCAGTCCGCCCCACTACAACTTCAGGGG
*
18718284 GATAAGACTTGCTTTCTTCAGTCTACTCCACTGCAACCTT-AGGGAGAT
131 GATAAGACTTGCTTTCTTCAGTCTACTCCACTGCAA-CTTCAAGGAGAT
* *
18718332 AAGACTTGTAACTTTAATCCGCTCCATTGTAACTTCA-AGGAGATAGAATTATTGGCTTTAATCT
1 AAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGA-GAGATAGAATTATTGGCTTTAATCT
* *
18718396 ACTACACTGCAACCTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCCCATTACAACTTCAGGG
65 ACTACACTGCAACCTCAGGGAGATAAGATTCGCCATCTTCAGTCCGCCCCACTACAACTTCAGGG
*
18718461 GGATAAGACTTGTTTTCTTCAGTCTACTCCACTGCAACTTCAAGGAGAT
130 GGATAAGACTTGCTTTCTTCAGTCTACTCCACTGCAACTTCAAGGAGAT
* ** ** *
18718510 AAGA-TTATTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATA
1 AAGACTT-GTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATA
18718555 AGATTCACCA
Statistics
Matches: 191, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
176 1 0.01
177 112 0.59
178 78 0.41
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (178 bp):
AAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGAATTATTGGCTTTAATCTA
CTACACTGCAACCTCAGGGAGATAAGATTCGCCATCTTCAGTCCGCCCCACTACAACTTCAGGGG
GATAAGACTTGCTTTCTTCAGTCTACTCCACTGCAACTTCAAGGAGAT
Found at i:18718558 original size:44 final size:43
Alignment explanation
Indices: 18718166--18718559 Score: 226
Period size: 44 Copynumber: 8.9 Consensus size: 43
18718156 AGACTTGTAA
* * * *
18718166 CTTTAATTTGCTCCACTGCAACTTCAGAGAGATAGGATTATTGG
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT-TTGG
* * *
18718210 CTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGA-TTTGC
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTTGG
* * * * * * *
18718252 CATCTT-CTGTCCGCCTCACTGCAGCTTTAGGG-GATAAGACTTGCTT-T
1 C-T-TTAATCTAC-TC-CACTGCAACTTCAGGGAGATAAGA-TT--TTGG
* * * **
18718299 CTTCAGTCTACTCCACTGCAACCTT-AGGGAGATAAGACTTGTAA
1 CTTTAATCTACTCCACTGCAA-CTTCAGGGAGATAAGA-TTTTGG
** * * *
18718343 CTTTAATCCGCTCCATTGTAACTTCAAGGAGAT-AGAATTATTGG
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAG-ATT-TTGG
* * * *
18718387 CTTTAATCTACTACACTGCAACCTCAGGGAGATAAGA-TTCGC
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTTGG
* * * * * * **
18718429 CATCTTCAGTCTGCCCCATTACAACTTCAGGGGGATAAGACTTGTTTT
1 C-T-TT-AATCTACTCCACTGCAACTTCAGGGAGATAAGA-TT-TTGG
* * *
18718477 CTTCAGTCTACTCCACTGCAACTTCAAGGAGATAAGATTATTGG
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT-TTGG
18718521 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT
18718560 CACCATCTTC
Statistics
Matches: 264, Mismatches: 64, Indels: 44
0.71 0.17 0.12
Matches are distributed among these distances:
42 7 0.03
43 15 0.06
44 147 0.56
45 82 0.31
46 6 0.02
47 3 0.01
48 4 0.02
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (43 bp):
CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTTGG
Found at i:18732480 original size:23 final size:22
Alignment explanation
Indices: 18732450--18732495 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
18732440 TGAATTAAAT
18732450 TTCTAAGATTACAAAATCATATC
1 TTCTAAGATTAC-AAATCATATC
* *
18732473 TTCTAAGATTGCATATCATATC
1 TTCTAAGATTACAAATCATATC
18732495 T
1 T
18732496 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (22 bp):
TTCTAAGATTACAAATCATATC
Found at i:18732498 original size:19 final size:19
Alignment explanation
Indices: 18732474--18732510 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
18732464 AATCATATCT
18732474 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
18732493 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
18732511 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:18732518 original size:17 final size:19
Alignment explanation
Indices: 18732477--18732518 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
18732467 CATATCTTCT
*
18732477 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
18732496 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
18732513 AAGATT
1 AAGATT
18732519 ATGTTTCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:18740751 original size:11 final size:11
Alignment explanation
Indices: 18740735--18740759 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18740725 ATTGAATTGA
18740735 ATTTTTAGTTT
1 ATTTTTAGTTT
18740746 ATTTTTAGTTT
1 ATTTTTAGTTT
18740757 ATT
1 ATT
18740760 ATCATGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (11 bp):
ATTTTTAGTTT
Found at i:18744831 original size:87 final size:88
Alignment explanation
Indices: 18744717--18745113 Score: 371
Period size: 87 Copynumber: 4.5 Consensus size: 88
18744707 CTTTGCTTCC
* * * ** * *
18744717 AAATTAAAAGTAAATAAAATCAGTTTCGGGATTTCTTGTCGCTGTTCAACGGATTTTATTCCATT
1 AAATTAAAATTAAATAAAATTAGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAAT
**
18744782 TTTTATTTTATTTCC-AAATGGA
66 TTTTATTTTATTTCCAAAAACGA
* * * *
18744804 AAATTAAAGTTAAATAAAATTCA-TTTCGGGATTTATTCCTGCCGTTCAACGAATTTTATTCGAA
1 AAATTAAAATTAAATAAAATT-AGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAA
** *
18744868 TTTCGATTTTATTT-CTAAAACGA
65 TTTTTATTTTATTTCCAAAAACGA
** * * * *
18744891 TTATTAAAATTAAAATAAAA-TATGTTTCAGGATTTATTCCCGCTGTTCAATGGAGTTTATTCCA
1 AAATTAAAATT-AAATAAAATTA-GTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCC-
*
18744955 AATTTGT-TTTTATTTCCAAAAACGA
63 AATTTTTATTTTATTTCCAAAAACGA
** * * *
18744980 GTATTAAAATTAAA-ATAAATTATGTTTCGGGATTTATTCTCGCCGTTTAACGGA-TTTATTAC-
1 AAATTAAAATTAAATA-AAATTA-GTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCA
*
18745042 ATTTTTATTTTGTTTCCAAAAACGA
64 ATTTTTATTTTATTTCCAAAAACGA
** *
18745067 GAAATTAAAATTAAATAAAATCT-GTTTCAAGATTTATTCTCGCCGTT
1 -AAATTAAAATTAAATAAAAT-TAGTTTCGGGATTTATTCCCGCCGTT
18745114 TGACAAGATT
Statistics
Matches: 256, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
86 7 0.03
87 117 0.46
88 78 0.30
89 54 0.21
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.42
Consensus pattern (88 bp):
AAATTAAAATTAAATAAAATTAGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAAT
TTTTATTTTATTTCCAAAAACGA
Found at i:18744860 original size:157 final size:158
Alignment explanation
Indices: 18744569--18744860 Score: 344
Period size: 157 Copynumber: 1.9 Consensus size: 158
18744559 AATTTTAAAT
18744569 TAAATAAAATCTATTTCGGGATGTTTTCCCGCTGTTAAACAGATTTTATTCTCTATTTTGATTTT
1 TAAATAAAATCTATTTCGGGATGTTTTCCCGCTGTTAAACAGATTTTATTCTCTATTTTGATTTT
* * ** * *
18744634 TATTTCCAAACAAACTGTAAAACTCAATAAAATTTGTTTAGGGATTTATTCCCGCTGTTTAACAA
66 TATTTCCAAACAAAATGTAAAACTAAATAAAATTCATTTAGGGATTTATTCCCGCCGTTCAACAA
18744699 ATTTTCGACTTTGCTTCCAAATTAAAAG
131 ATTTTCGACTTTGCTTCCAAATTAAAAG
** * * *
18744727 TAAATAAAATC-AGTTTCGGGAT-TTCTTGTCGCTGTTCAACGGATTTTATTC-C-ATTTT-TTA
1 TAAATAAAATCTA-TTTCGGGATGTT-TTCCCGCTGTTAAACAGATTTTATTCTCTATTTTGAT-
* ** * *
18744787 TTTTATTTCCAAATGGAAAAT-TAAAGTTAAATAAAATTCATTTCGGGATTTATTCCTGCCGTTC
63 TTTTATTTCCAAA--CAAAATGTAAAACTAAATAAAATTCATTTAGGGATTTATTCCCGCCGTTC
*
18744851 AACGAATTTT
126 AACAAATTTT
18744861 ATTCGAATTT
Statistics
Matches: 112, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
155 1 0.01
156 18 0.16
157 47 0.42
158 46 0.41
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (158 bp):
TAAATAAAATCTATTTCGGGATGTTTTCCCGCTGTTAAACAGATTTTATTCTCTATTTTGATTTT
TATTTCCAAACAAAATGTAAAACTAAATAAAATTCATTTAGGGATTTATTCCCGCCGTTCAACAA
ATTTTCGACTTTGCTTCCAAATTAAAAG
Found at i:18745229 original size:84 final size:84
Alignment explanation
Indices: 18745120--18745307 Score: 234
Period size: 84 Copynumber: 2.2 Consensus size: 84
18745110 CGTTTGACAA
* * * * * * *
18745120 GATTTTAGTTTGCTTCCAAAGTAGAATTAAATTAAATAATAT-TTGTTTTGGGATTTATTCTCGC
1 GATTTTATTTTGTTTCCAAAGTAGAATTAAATTAAATAAAATCTT-TTTCGGGATTCATTCCCAC
* *
18745184 AGTTTAACAATATTTTATTT
65 AGTTTAACAAGATTTTATTC
* *
18745204 GATTTTATTTTGTTTCCAAATTAGAATTAAATTAAATAAAATCTTTTTCGGGATTCATTCCCACC
1 GATTTTATTTTGTTTCCAAAGTAGAATTAAATTAAATAAAATCTTTTTCGGGATTCATTCCCACA
18745269 GTTTAACAAGATTTTATTC
66 GTTTAACAAGATTTTATTC
* * *
18745288 GATATTGTTTTATTTCCAAA
1 GATTTTATTTTGTTTCCAAA
18745308 CAAAGATATA
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 87 0.98
85 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (84 bp):
GATTTTATTTTGTTTCCAAAGTAGAATTAAATTAAATAAAATCTTTTTCGGGATTCATTCCCACA
GTTTAACAAGATTTTATTC
Found at i:18745278 original size:158 final size:161
Alignment explanation
Indices: 18744986--18745284 Score: 385
Period size: 158 Copynumber: 1.9 Consensus size: 161
18744976 ACGAGTATTA
* *
18744986 AAATTAAAATAAATTATGTTTCGGGATTTATTCTCGCCGTTTAACGGATTTATTACATTTTTATT
1 AAATTAAAATAAATTATGTTTCGGGATTTATTCTCGCAGTTTAACAGATTTATTACATTTTTATT
* * * *
18745051 TTGTTTCCAAAAACGAGAAATTAAAATTAAATAAAATCTGTTTCAAGATTTATTCTCGCCGTTTG
66 TTGTTTCC-AAAACGAGAAATTAAAATTAAATAAAATCTGTTTCAAGATTCATTCCCACCGTTTA
18745116 ACAAGATTTTAGTTTGCTTCCAAAGTAGAATT
130 ACAAGATTTTAGTTTGCTTCCAAAGTAGAATT
* * **
18745148 AAATT-AAATAATATT-TGTTTTGGGATTTATTCTCGCAGTTTAACAATATTTTATTTGA-TTTT
1 AAATTAAAATAA-ATTATGTTTCGGGATTTATTCTCGCAGTTTAAC-AGA-TTTATTACATTTTT
** * **
18745210 ATTTTGTTTCC-AAATTAG-AATT-AAATTAAATAAAATCTTTTTCGGGATTCATTCCCACCGTT
63 ATTTTGTTTCCAAAACGAGAAATTAAAATTAAATAAAATCTGTTTCAAGATTCATTCCCACCGTT
18745272 TAACAAGATTTTA
128 TAACAAGATTTTA
18745285 TTCGATATTG
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
158 46 0.39
159 4 0.03
160 5 0.04
161 33 0.28
162 24 0.20
163 7 0.06
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (161 bp):
AAATTAAAATAAATTATGTTTCGGGATTTATTCTCGCAGTTTAACAGATTTATTACATTTTTATT
TTGTTTCCAAAACGAGAAATTAAAATTAAATAAAATCTGTTTCAAGATTCATTCCCACCGTTTAA
CAAGATTTTAGTTTGCTTCCAAAGTAGAATT
Found at i:18745325 original size:84 final size:83
Alignment explanation
Indices: 18745185--18745368 Score: 185
Period size: 84 Copynumber: 2.2 Consensus size: 83
18745175 TATTCTCGCA
* * * * ** * *
18745185 GTTTAACAATATTTTATTTGATTTTATTTTGTTTCCAAATTAGAATTAAATTAAATAAAATCTTT
1 GTTTAACAAGATTTTATTCGATATTATTTTATTTCCAAAAAAGAATTAAATCAAAT-AAATCTAT
* *
18745250 TTCGGGATTCATTCCCACC
65 TTCAGAATTCATTCCCACC
* *
18745269 GTTTAACAAGATTTTATTCGATATTGTTTTATTTCCAAACAAAG-A-TATAATCAAATAATTCTA
1 GTTTAACAAGATTTTATTCGATATTATTTTATTTCCAAA-AAAGAATTA-AATCAAATAAATCTA
* *
18745332 TTTCAGAATTTATTCCCGCC
64 TTTCAGAATTCATTCCCACC
*
18745352 ATTTAAC-AGATTTTATT
1 GTTTAACAAGATTTTATT
18745369 TTGATTTAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
82 10 0.12
83 29 0.35
84 42 0.51
85 2 0.02
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.45
Consensus pattern (83 bp):
GTTTAACAAGATTTTATTCGATATTATTTTATTTCCAAAAAAGAATTAAATCAAATAAATCTATT
TCAGAATTCATTCCCACC
Found at i:18750639 original size:18 final size:18
Alignment explanation
Indices: 18750590--18750642 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
18750580 CATGCAGCAC
*
18750590 ATTGCGTGGAATGCATGG
1 ATTGCATGGAATGCATGG
* * *
18750608 TTTACATGAAATGCATGG
1 ATTGCATGGAATGCATGG
*
18750626 ATTGCATGGGATGCATG
1 ATTGCATGGAATGCATG
18750643 AAAAGCATTT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.30
Consensus pattern (18 bp):
ATTGCATGGAATGCATGG
Found at i:18762206 original size:28 final size:28
Alignment explanation
Indices: 18762166--18762262 Score: 158
Period size: 28 Copynumber: 3.5 Consensus size: 28
18762156 CTACAACATG
*
18762166 CAGTAACAGTGTGGTCCTTAGCCCGATA
1 CAGTAACAGTGTGGGCCTTAGCCCGATA
18762194 CAGTAACAGTGTGGGCCTTAGCCCGATA
1 CAGTAACAGTGTGGGCCTTAGCCCGATA
* *
18762222 CAGAAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCGATA
*
18762250 CAGTAACAATGTG
1 CAGTAACAGTGTG
18762263 ATAATGCAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCGATA
Found at i:18762337 original size:21 final size:21
Alignment explanation
Indices: 18762289--18762338 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
18762279 CAATCCAGCT
* *
18762289 AACACAACGCTTTGTACCGCC
1 AACACACCGCTTTGTACCACC
18762310 AACACACCGCTTTGTACCACC
1 AACACACCGCTTTGTACCACC
18762331 AACACACC
1 AACACACC
18762339 ATGTGGGGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.42, G:0.10, T:0.16
Consensus pattern (21 bp):
AACACACCGCTTTGTACCACC
Found at i:18762602 original size:27 final size:27
Alignment explanation
Indices: 18762581--18762832 Score: 250
Period size: 27 Copynumber: 9.3 Consensus size: 27
18762571 AGGTATAGTA
*
18762581 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGAGTATTTTG
18762608 GTCATTTTACCCTATGGGAGTATTTTG
1 GTCATTTTACCCTATGGGAGTATTTTG
18762635 GTCATTTTACCCTATGGGAGTATTTTG
1 GTCATTTTACCCTATGGGAGTATTTTG
* *
18762662 GTCATTTTACCCTTTGGGAGTATTTCG
1 GTCATTTTACCCTATGGGAGTATTTTG
*
18762689 GTCATTTTACCCT-TCAGGG-GTATTTTA
1 GTCATTTTACCCTAT--GGGAGTATTTTG
18762716 GTCATTTTACCCT-TCAGGG-GTATTTTG
1 GTCATTTTACCCTAT--GGGAGTATTTTG
* * * * **
18762743 ATTATTTTA-CCTTTCGGGGGTATTTCA
1 GTCATTTTACCCTAT-GGGAGTATTTTG
** *
18762770 GTCATTTTACCCT-TCAGAGGTATTTTA
1 GTCATTTTACCCTATGGGA-GTATTTTG
*
18762797 GTCATTTTACCCT-TCAGGG-GTATTTTA
1 GTCATTTTACCCTAT--GGGAGTATTTTG
18762824 GTCATTTTA
1 GTCATTTTA
18762833 TTGACCCTAC
Statistics
Matches: 198, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 8 0.04
27 183 0.92
28 6 0.03
29 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.45
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGAGTATTTTG
Found at i:18762645 original size:54 final size:53
Alignment explanation
Indices: 18762581--18762832 Score: 303
Period size: 54 Copynumber: 4.7 Consensus size: 53
18762571 AGGTATAGTA
*
18762581 GTCATTTTACCCTAT-GGGGGTATTTTGGTCATTTTACCCTATGGGAGTATTTTG
1 GTCATTTTACCCT-TCGGGGGTATTTTAGTCATTTTACCCT-TGGGAGTATTTTG
* * *
18762635 GTCATTTTACCCTAT-GGGAGTATTTTGGTCATTTTACCCTTTGGGAGTATTTCG
1 GTCATTTTACCCT-TCGGGGGTATTTTAGTCATTTTACCC-TTGGGAGTATTTTG
*
18762689 GTCATTTTACCCTTCAGGGGTATTTTAGTCATTTTACCCTTCAGGG-GTATTTTG
1 GTCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTT--GGGAGTATTTTG
* * * * ** *
18762743 ATTATTTTACCTTTCGGGGGTATTTCAGTCATTTTACCCTTCAGAGGTATTTTA
1 GTCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTGGGA-GTATTTTG
*
18762797 GTCATTTTACCCTTCAGGGGTATTTTAGTCATTTTA
1 GTCATTTTACCCTTCGGGGGTATTTTAGTCATTTTA
18762833 TTGACCCTAC
Statistics
Matches: 173, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
52 1 0.01
53 3 0.02
54 165 0.95
55 4 0.02
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.45
Consensus pattern (53 bp):
GTCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTGGGAGTATTTTG
Found at i:18762692 original size:81 final size:79
Alignment explanation
Indices: 18762581--18762832 Score: 312
Period size: 81 Copynumber: 3.1 Consensus size: 79
18762571 AGGTATAGTA
* * *
18762581 GTCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGGGAGTATTTTGGTCATTTTACC
1 GTCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCT-TGGGAGTATTTTAGTCATTTTACC
18762646 C-TATGGGAGTATTTTG
65 CTTA-GGG-GTATTTTG
*
18762662 GTCATTTTACCCTTTGGGAGTATTTCGGTCATTTTACCCTTCAGGG-GTATTTTAGTCATTTTAC
1 GTCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTT--GGGAGTATTTTAGTCATTTTAC
18762726 CCTTCAGGGGTATTTTG
64 CCTT-AGGGGTATTTTG
* * * **
18762743 ATTATTTTA-CCTTTCGGGGGTATTTCAGTCATTTTACCCTTCAGAGGTATTTTAGTCATTTTAC
1 GTCATTTTACCCTTT-GGGGGTATTTCGGTCATTTTACCCTTGGGA-GTATTTTAGTCATTTTAC
*
18762807 CCTTCAGGGGTATTTTA
64 CCTT-AGGGGTATTTTG
18762824 GTCATTTTA
1 GTCATTTTA
18762833 TTGACCCTAC
Statistics
Matches: 151, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
79 1 0.01
80 6 0.04
81 136 0.90
82 7 0.05
83 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.45
Consensus pattern (79 bp):
GTCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTGGGAGTATTTTAGTCATTTTACCC
TTAGGGGTATTTTG
Found at i:18763997 original size:13 final size:13
Alignment explanation
Indices: 18763979--18764024 Score: 83
Period size: 13 Copynumber: 3.5 Consensus size: 13
18763969 CTACATAGCT
18763979 AGTATAACCGAAA
1 AGTATAACCGAAA
*
18763992 AGTATAATCGAAA
1 AGTATAACCGAAA
18764005 AGTATAACCGAAA
1 AGTATAACCGAAA
18764018 AGTATAA
1 AGTATAA
18764025 TCAGCACCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.54, C:0.11, G:0.15, T:0.20
Consensus pattern (13 bp):
AGTATAACCGAAA
Found at i:18780752 original size:46 final size:46
Alignment explanation
Indices: 18780702--18780794 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
18780692 CAAATAAAAA
18780702 AGGAAAAGAAAAAGAAAAGCTTTAAAAATGATATTTTTTATCAGTC
1 AGGAAAAGAAAAAGAAAAGCTTTAAAAATGATATTTTTTATCAGTC
18780748 AGGAAAAGAAAAAGAAAAGCTTTAAAAATGATATTTTTTATCAGTC
1 AGGAAAAGAAAAAGAAAAGCTTTAAAAATGATATTTTTTATCAGTC
18780794 A
1 A
18780795 CTATATATGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.51, C:0.06, G:0.15, T:0.28
Consensus pattern (46 bp):
AGGAAAAGAAAAAGAAAAGCTTTAAAAATGATATTTTTTATCAGTC
Found at i:18788408 original size:27 final size:28
Alignment explanation
Indices: 18788378--18788431 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
18788368 ATCATGTTAA
*
18788378 TTAATC-ATTCGAAAGCTGTCAAAACAT
1 TTAATCTATACGAAAGCTGTCAAAACAT
* *
18788405 TTAATCTATACGAAAGCTTTTAAAACA
1 TTAATCTATACGAAAGCTGTCAAAACA
18788432 AATTGTGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (28 bp):
TTAATCTATACGAAAGCTGTCAAAACAT
Found at i:18793324 original size:20 final size:20
Alignment explanation
Indices: 18793299--18793337 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18793289 GAATTATCCC
18793299 GAATACGAAAAAACATGAGG
1 GAATACGAAAAAACATGAGG
* *
18793319 GAATACTAAAAACCATGAG
1 GAATACGAAAAAACATGAG
18793338 AAAGTACCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.13, G:0.21, T:0.13
Consensus pattern (20 bp):
GAATACGAAAAAACATGAGG
Found at i:18795111 original size:3 final size:3
Alignment explanation
Indices: 18795105--18795139 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
18795095 TTAATTTAGT
18795105 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
18795140 TATTATTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:18795144 original size:3 final size:3
Alignment explanation
Indices: 18795138--18795223 Score: 100
Period size: 3 Copynumber: 28.7 Consensus size: 3
18795128 CATCATCATC
* * * *
18795138 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTT ATT TTT AGT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * *
18795186 ATT ATT ATT ATT GGT ATT ATT ATT TTT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
18795224 CAACTTATTT
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:18801815 original size:44 final size:43
Alignment explanation
Indices: 18801754--18802552 Score: 160
Period size: 44 Copynumber: 18.6 Consensus size: 43
18801744 TCGAAGAAAC
* * *
18801754 CAATCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCA
1 CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
* ** *** *
18801797 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCATC-
1 CA-ATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
* **
18801839 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCT-GACGAAGAA--A
1 CAATCTTATCTCTCTGAAGTTGCAGTGGAG-TGGATTAA-AACCA
* * * *
18801881 TCAATCCTCTCTCTCTAAAGTTGTAGTGGAGTGGATTAAAACCA
1 -CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
* * * * * *** *
18801925 CAGATCTTATCTTTCTGAAGTTACAAT--AGAGCATATCGCATC-
1 CA-ATCTTATCTCTCTGAAGTTGCAGTGGAGTGGAT-TAAAACCA
* * * ** *
18801967 CAGTCTTATCTCTCTGAAGATGCAGTGGA-TCAGACAGAAGAAAC-
1 CAATCTTATCTCTCTGAAGTTGCAGTGGAGT-GGA-TTAA-AACCA
* * * *
18802011 CAATCCTATCTCCCTGAAGTTACAGTGGAG-CGACTTAAAACCA
1 CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGA-TTAAAACCA
* ** * * *
18802054 CAGATCTTATCCCTCTGAAGTTTTAGT--AGAGCA-T--ATCGCA
1 CA-ATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAAC-CA
* * * * * ** ** *
18802094 TCTAGTCTTATCTCCCTAAAGTTGCAGAGAAGCAGACGGAAGAAAC-
1 -C-AATCTTATCTCTCTGAAGTTGCAGTGGAGTGGA-TTAA-AACCA
* * * *
18802140 CAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCA
1 CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
* * ** ** *
18802183 CAAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATT-GCATC-
1 C-AATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
* * ** ** *
18802225 CAATCTTATCTCCCTGAATTTGCAGTGGAG-CAAACAGAAGA-AA
1 CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTA-AA-ACCA
* * * ** ** *
18802268 CTAATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATT-GCATC-
1 C-AATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
* * * ** * **
18802310 CAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-CAAAAGAAA
1 CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAA-CCA
* * *
18802353 CCAATCCTATCTCTTTGAAGTTGCAGTGGAGCGGATTAAAACCA
1 -CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
* * ** *** *
18802397 CATATCTTATCTCTCTGAAGTTGTAGTAGAGCAGA-TCGCATC-
1 CA-ATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
* * * * ** * *
18802439 CAGTCTTATCTTTCTGAAGTTTCAATGGAGCAGA-CAGAAGA-AA
1 CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTA-AA-ACCA
* * * * *
18802482 TCAATCCTATCTCCCTAAAGTTGCAATGGAGCGGATTAAAACCA
1 -CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
*
18802526 CAGATCTTATCTCCCTGAAGTTGCAGT
1 CA-ATCTTATCTCTCTGAAGTTGCAGT
18802553 AGAGCAGATT
Statistics
Matches: 535, Mismatches: 169, Indels: 103
0.66 0.21 0.13
Matches are distributed among these distances:
39 2 0.00
40 3 0.01
41 147 0.27
42 26 0.05
43 69 0.13
44 279 0.52
45 7 0.01
47 1 0.00
48 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (43 bp):
CAATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCA
Found at i:18802071 original size:129 final size:128
Alignment explanation
Indices: 18801746--18802343 Score: 754
Period size: 129 Copynumber: 4.7 Consensus size: 128
18801736 AGAACAGATC
*
18801746 GAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCACAGATCTTATCTCT
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAG-CGATTAAAACCACAGATCTTATCTCT
*
18801811 CTGAAGTTGCAGTAGAGCAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCTGAC-
65 CTGAAGTTGCAGTAGAGCAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
* * * * * *
18801874 GAAGAAATCAATCCTCTCTCTCTAAAGTTGTAGTGGAGTGGATTAAAACCACAGATCTTATCTTT
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAG-CGATTAAAACCACAGATCTTATCTCT
* * * * * * *
18801939 CTGAAGTTACAATAGAGCATATCGCATCCAGTCTTATCTCTCTGAAGATGCAGTGGATCAGACA
65 CTGAAGTTGCAGTAGAGCAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
** *
18802003 GAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGACTTAAAACCACAGATCTTATCCCT
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGCGA-TTAAAACCACAGATCTTATCTCT
** * * * * * * *
18802068 CTGAAGTTTTAGTAGAGCATATCGCATCTAGTCTTATCTCCCTAAAGTTGCAGAGAAGCAGACG
65 CTGAAGTTGCAGTAGAGCAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
*
18802132 GAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTCT
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGC-GATTAAAACCACAGATCTTATCTCT
* * * *
18802197 CTGAAGTTGTAGTAGAGCAGATTGCATCCAATCTTATCTCCCTGAATTTGCAGTGGAGCAAACA
65 CTGAAGTTGCAGTAGAGCAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
* * * ** * *
18802261 GAAGAAACTAATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATT-GCATC-CAG-TCTTATCTCC
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGC-GATTAAAACCACAGATCTTATCTCT
* *
18802323 CTGAAGTTGTAGTGGAGCAGA
65 CTGAAGTTGCAGTAGAGCAGA
18802344 CAAAAGAAAC
Statistics
Matches: 409, Mismatches: 58, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
126 29 0.07
127 2 0.00
128 119 0.29
129 257 0.63
130 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (128 bp):
GAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGCGATTAAAACCACAGATCTTATCTCTC
TGAAGTTGCAGTAGAGCAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
Found at i:18802237 original size:85 final size:85
Alignment explanation
Indices: 18802139--18802652 Score: 387
Period size: 85 Copynumber: 6.0 Consensus size: 85
18802129 ACGGAAGAAA
* * *
18802139 CCAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGT
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAAATCTTATCTCTCTGAAGT
*
18802204 TGTAGTAGAGCAGATTGCAT
66 TGCAGTAGAGCAGATTGCAT
* * * * * * *
18802224 CCAATCTTATCTCCCTGAATTTGCAGTGGAGC-AAACAGAAGA-AACTAATCCTATCTCCCTGAA
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCA-AA-ACCACAAATCTTATCTCTCTGAA
18802287 GTTGCAGTAGAGCAGATTGCAT
64 GTTGCAGTAGAGCAGATTGCAT
* * * ** * * *
18802309 CCAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-CAAAAGAAACCAATCCTATCTCTTTGAAG
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAA-CCACAAATCTTATCTCTCTGAAG
* * ** *
18802373 TTGCAGTGGAGCGGATTAAAAC
65 TTGCAGTAGAGCAGATT-GCAT
* * * * ** * * *
18802395 CACATATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATC-GCATC-C-AGTCTTATCTTTCTGAA
1 C-CA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAAATCTTATCTCTCTGAA
* * * *
18802457 GTTTCAATGGAGCAGACAGA-AGAAAT
64 GTTGC-A-GTAG-AG-CAGATTG-CAT
* * * * * *
18802483 -CAATCCTATCTCCCTAAAGTTGCAATGGAGCGGATTAAAACCACAGATCTTATCTCCCTGAAGT
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAAATCTTATCTCTCTGAAGT
18802547 TGCAGTAGAGCAGATTGCAT
66 TGCAGTAGAGCAGATTGCAT
* * ** *** *
18802567 CGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAATGATGGATCTCATCTCTCTGAAGT
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAAATCTTATCTCTCTGAAGT
* * *
18802632 TACAGTAGTGCAGATCGCAT
66 TGCAGTAGAGCAGATTGCAT
18802652 C
1 C
18802653 AGACTTATCT
Statistics
Matches: 335, Mismatches: 75, Indels: 38
0.75 0.17 0.08
Matches are distributed among these distances:
83 1 0.00
84 10 0.03
85 250 0.75
86 13 0.04
87 6 0.02
88 51 0.15
89 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (85 bp):
CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCACAAATCTTATCTCTCTGAAGT
TGCAGTAGAGCAGATTGCAT
Found at i:18802237 original size:214 final size:214
Alignment explanation
Indices: 18802010--18802652 Score: 647
Period size: 214 Copynumber: 3.0 Consensus size: 214
18802000 ACAGAAGAAA
* * ** *
18802010 CCAATCCTATCTCCCTGAAGTTACAGTGGAGC-GACTTAA-AACCAC-AGATCTTATC-CCTCTG
1 CCAATCTTATCTCCCTGAAGTTACAGTGGAGCAAACAGAAGAA--ACTA-ATCCTATCTCC-CTG
** * * **
18802071 AAGTTTTAGTAGAGCATATCGCATCTAGTCTTATCTCCCTAAAGTTGCAGAGAAGCAGACGGAAG
62 AAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGAGAAGCAGACAAAAG
*
18802136 AAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGA
127 AAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGA
*
18802201 AGTTGTAGTAGAGCAGATTGCAT
192 AGTTGTAGTAGAGCAGATCGCAT
* *
18802224 CCAATCTTATCTCCCTGAATTTGCAGTGGAGCAAACAGAAGAAACTAATCCTATCTCCCTGAAGT
1 CCAATCTTATCTCCCTGAAGTTACAGTGGAGCAAACAGAAGAAACTAATCCTATCTCCCTGAAGT
* * * * *
18802289 TGCAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAAAAGAAAC
66 TGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGAGAAGCAGACAAAAGAAAC
** *
18802354 CAATCCTATCTCTTTGAAGTTGCAGTGGAGCGGATTAAAACCACATATCTTATCTCTCTGAAGTT
131 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTT
18802419 GTAGTAGAGCAGATCGCAT
196 GTAGTAGAGCAGATCGCAT
* ** * * * *
18802438 CCAGTCTTATCTTTCTGAAGTTTCAATGGAGCAGACAGAAGAAA-TCAATCCTATCTCCCTAAAG
1 CCAATCTTATCTCCCTGAAGTTACAGTGGAGCAAACAGAAGAAACT-AATCCTATCTCCCTGAAG
* * * *** * * **
18802502 TTGCAATGGAGCGGATTAAAACCACAGATCTTATCTCCCTGAAGTTGCAGTAG-AGCAG---ATT
65 TTGCAGTAGAGCAGA-TCGCATC-CAG-TCTTATCTCCCTAAAGTTGCAG-AGAAGCAGACAAAA
* * * * * * ** *** *
18802563 GCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAATGATGGATCTCATCTCTCTG
126 GAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTG
** *
18802628 AAGTTACAGTAGTGCAGATCGCAT
191 AAGTTGTAGTAGAGCAGATCGCAT
18802652 C
1 C
18802653 AGACTTATCT
Statistics
Matches: 361, Mismatches: 59, Indels: 18
0.82 0.13 0.04
Matches are distributed among these distances:
213 1 0.00
214 318 0.88
215 10 0.03
216 5 0.01
217 26 0.07
218 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (214 bp):
CCAATCTTATCTCCCTGAAGTTACAGTGGAGCAAACAGAAGAAACTAATCCTATCTCCCTGAAGT
TGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGAGAAGCAGACAAAAGAAAC
CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTT
GTAGTAGAGCAGATCGCAT
Found at i:18802357 original size:129 final size:128
Alignment explanation
Indices: 18801970--18802607 Score: 440
Period size: 129 Copynumber: 4.9 Consensus size: 128
18801960 TCGCATCCAG
* * * * *
18801970 TCTTATCTCTCTGAAGATGCAGTGGATCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACAGAAGAAA-CAATCCTATCTCCCTGAAGTTGCA
* ** * * ** *
18802035 GTGGAGC-GACTTAAAACCACAGATCTTATC-CCTCTGAAGTTTTAGT--AG-AG-CATATCGCA
65 GTAGAGCAGA-TT-GCATC-CAG-TCTTATCTCC-CTGAAGTTGTAGTGGAGCAGACA-AAAGAA
* * *
18802094 TCTAG
124 ACCAA
* * * * * *
18802099 TCTTATCTCCCTAAAGTTGCAGAGAAGCAGACGGAAGAAACCAATCCTATCTCCCTGAAGTTGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACAGAAGAAA-CAATCCTATCTCCCTGAAGTTGCA
* * ** * * * * ** * *
18802164 GTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTGTAGTAGAGCAG---ATTGCATCC
65 GTAGAGCAGATT-GCATC-C-AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAAAAGAAACC
18802226 AA
127 AA
*
18802228 TCTTATCTCCCTGAATTTGCAGTGGAGCAAACAGAAGAAACTAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACAGAAGAAAC-AATCCTATCTCCCTGAAGTTGCA
18802293 GTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAAAAGAAACCAA
65 GTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAAAAGAAACCAA
* ** * ** * * *
18802357 TCCTATCTCTTTGAAGTTGCAGTGGAGCGGATTA-AA-ACCACATATCTTATCTCTCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGC-AAACAGAAGA-AACA-ATCCTATCTCCCTGAAGTTG
* * ** * * *
18802420 TAGTAGAGCAGATCGCATCCAGTCTTATCTTTCTGAAGTT-TCAATGGAGCAGACAGAAGAAATC
63 CAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGT-AGTGGAGCAGACAAAAGAAACC
18802484 AA
127 AA
* * * * ** * *
18802486 TCCTATCTCCCTAAAGTTGCAATGGAGCGGATTA-AA-ACCACAGATCTTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGC-AAACAGAAGA-AACA-ATCCTATCTCCCTGAAGTTG
* * *
18802549 CAGTAGAGCAGATTGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAA
63 CAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-CAAAA
18802608 TGATGGATCT
Statistics
Matches: 427, Mismatches: 66, Indels: 31
0.81 0.13 0.06
Matches are distributed among these distances:
126 29 0.07
127 1 0.00
128 6 0.01
129 377 0.88
130 10 0.02
131 2 0.00
132 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (128 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACAGAAGAAACAATCCTATCTCCCTGAAGTTGCAG
TAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAAAAGAAACCAA
Found at i:18802623 original size:129 final size:127
Alignment explanation
Indices: 18802275--18802632 Score: 475
Period size: 129 Copynumber: 2.8 Consensus size: 127
18802265 AAACTAATCC
*
18802275 TATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGTAGTGGAG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * *
18802340 CAGACAAAAGAAACCAATCCTATCTCTTTGAAGTTGCAGTGGAGCGGATTAAAACCACATATCT
66 CAGACAAAAG--ATCAATCCTATCTCTCTGAAGTTGCAATGGAGCGGATTAAAACCACAGATCT
* * * ** * *
18802404 TATCTCTCTGAAGTTGTAGTAGAGCAGATCGCATCCAGTCTTATCTTTCTGAAGTTTCAATGGAG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * *
18802469 CAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAATGGAGCGGATTAAAACCACAGATCT
66 CAGACA-AA-AGATCAATCCTATCTCTCTGAAGTTGCAATGGAGCGGATTAAAACCACAGATCT
*
18802533 TATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* **
18802598 CGGATCAAAATGATGGAT-CTCATCTCTCTGAAGTT
66 CAGA-CAAAA-GATCAATCCT-ATCTCTCTGAAGTT
18802633 ACAGTAGTGC
Statistics
Matches: 195, Mismatches: 29, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
128 3 0.02
129 187 0.96
130 4 0.02
131 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (127 bp):
TATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
CAGACAAAAGATCAATCCTATCTCTCTGAAGTTGCAATGGAGCGGATTAAAACCACAGATCT
Found at i:18802631 original size:343 final size:343
Alignment explanation
Indices: 18801927--18802662 Score: 991
Period size: 343 Copynumber: 2.1 Consensus size: 343
18801917 TAAAACCACA
* * * * *
18801927 GATCTTATCTTTCTGAAGTTACAATAGAGCATATCGCATCCAGTCTTATCTCTCTGAAGATGCAG
1 GATCTCATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGATGCAG
* *
18801992 TGGATCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGACTTAAAACCACAG
66 TGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGACTTAAAACCACAG
* * *
18802057 ATCTTATCCCTCTGAAGTTTTAGTAGAGCATATCGCATCTAGTCTTATCTCCCTAAAGTTGCAGA
131 ATCTTATCCCTCTGAAGTTGTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGA
* * * *
18802122 GAAGCAGACGGAAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAAA
196 GAAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAATGGAGCGGATTAAAACCACAAA
* * *
18802187 TCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTGCATCCAATCTTATCTCCCTGAATTTGCAGTG
261 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAATCTTATCTCCCTGAAGTTGCAGTG
18802252 GAGCAAACAGAAGAAACT
326 GAGCAAACAGAAGAAACT
* * * * * *
18802270 AATC-CTATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGTA
1 GATCTC-ATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGATGCA
** *
18802334 GTGGAGCAGACAAAAGAAACCAATCCTATCTCTTTGAAGTTGCAGTGGAGCGGA-TTAAAACCAC
65 GTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGC-GACTTAAAACCAC
* * ** * *
18802398 ATATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATCGCATCCAGTCTTATCTTTCTGAAGTTTCA
129 AGATCTTATCCCTCTGAAGTTGTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCA
* *
18802463 -ATGGAGCAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAATGGAGCGGATTAAAACCAC
194 GA-GAAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAATGGAGCGGATTAAAACCAC
* * *
18802527 AGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCGAGTCTTATCTCCCTGAAGTTGCA
258 AAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAATCTTATCTCCCTGAAGTTGCA
* * *
18802592 GTGGAGCGGATCA-AA-ATGA-T
323 GTGGAGC-AAACAGAAGA-AACT
* *
18802612 GGATCTCATCTCTCTGAAGTTACAGTAGTGCAGATCGCAT-CAGACTTATCT
1 -GATCTCATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCT
18802663 TTAAGTTGTA
Statistics
Matches: 340, Mismatches: 46, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
342 13 0.04
343 321 0.94
344 6 0.02
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (343 bp):
GATCTCATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGATGCAG
TGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGACTTAAAACCACAG
ATCTTATCCCTCTGAAGTTGTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGA
GAAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAATGGAGCGGATTAAAACCACAAA
TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGCATCCAATCTTATCTCCCTGAAGTTGCAGTG
GAGCAAACAGAAGAAACT
Found at i:18803514 original size:6 final size:7
Alignment explanation
Indices: 18803498--18803522 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
18803488 GCTGCTGTTC
18803498 TTTTTAT
1 TTTTTAT
18803505 TTTTTAT
1 TTTTTAT
18803512 TTTTTAT
1 TTTTTAT
18803519 TTTT
1 TTTT
18803523 GATTGATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:18804164 original size:3 final size:3
Alignment explanation
Indices: 18804156--18804252 Score: 88
Period size: 3 Copynumber: 32.7 Consensus size: 3
18804146 TTAGTTTAAG
* * * * *
18804156 ATT ATT ATT AAT -TT AGT ATC ATT ATT ATT ATT ATT AGT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * * * *
18804203 ATT ATT GGT ATT ATT ATT CTT ATT ATT CTT ATT ATT TTT ATT ATT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
18804251 AT
1 AT
18804253 CAACTTATTT
Statistics
Matches: 72, Mismatches: 21, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
2 1 0.01
3 71 0.99
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:18804696 original size:28 final size:28
Alignment explanation
Indices: 18804613--18804704 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 28
18804603 CTCTTTTAAA
*
18804613 TATTTTAATATCTTTAATTTATTTCA-ACT
1 TATTTTAATAT-TTTAATTTATTT-ATATT
* *
18804642 TATTTCAATATTGTTAATTAATTTATATT
1 TATTTTAATATT-TTAATTTATTTATATT
* *
18804671 TATTTTAACATTTTAATTTATATATATT
1 TATTTTAATATTTTAATTTATTTATATT
18804699 ATATTT
1 -TATTT
18804705 ATTTCTTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
28 16 0.30
29 37 0.70
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (28 bp):
TATTTTAATATTTTAATTTATTTATATT
Found at i:18806899 original size:28 final size:28
Alignment explanation
Indices: 18806834--18806911 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
18806824 ATGAAAGCTA
**
18806834 AGAAGAGAAAGAAAAGCAAGAGAAGTTG
1 AGAAGAGAAAGAAAAGCAAGAGAAGCAG
* *
18806862 AGGAGAGAAAGAAAAGCGAGAGAAGCAG
1 AGAAGAGAAAGAAAAGCAAGAGAAGCAG
*
18806890 AGAAGTGAAAGAAGAA-CAAGAG
1 AGAAGAGAAAGAA-AAGCAAGAG
18806912 GTTGATGAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 40 0.95
29 2 0.05
ACGTcount: A:0.56, C:0.05, G:0.35, T:0.04
Consensus pattern (28 bp):
AGAAGAGAAAGAAAAGCAAGAGAAGCAG
Found at i:18807468 original size:28 final size:28
Alignment explanation
Indices: 18807437--18807490 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
18807427 AAGAATCTCA
*
18807437 AACCATGAACCCAAAAC-CTATAACCTTG
1 AACCATAAACCCAAAACTC-ATAACCTTG
* *
18807465 AACCCTAAATCCAAAACTCATAACCT
1 AACCATAAACCCAAAACTCATAACCT
18807491 ATAACCCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 21 0.95
29 1 0.05
ACGTcount: A:0.44, C:0.33, G:0.04, T:0.19
Consensus pattern (28 bp):
AACCATAAACCCAAAACTCATAACCTTG
Found at i:18807539 original size:14 final size:14
Alignment explanation
Indices: 18807508--18807553 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
18807498 CAAACACTTA
*
18807508 AACCTTAAACC-CG
1 AACCTTGAACCTCG
*
18807521 AACCTTGAACCTTG
1 AACCTTGAACCTCG
*
18807535 AACCTTGAATCTCG
1 AACCTTGAACCTCG
18807549 AACCT
1 AACCT
18807554 CAAGGTTTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.33, C:0.33, G:0.11, T:0.24
Consensus pattern (14 bp):
AACCTTGAACCTCG
Found at i:18807541 original size:7 final size:7
Alignment explanation
Indices: 18807520--18807553 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
18807510 CCTTAAACCC
18807520 GAACCTT
1 GAACCTT
18807527 GAACCTT
1 GAACCTT
18807534 GAACCTT
1 GAACCTT
* *
18807541 GAATCTC
1 GAACCTT
18807548 GAACCT
1 GAACCT
18807554 CAAGGTTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (7 bp):
GAACCTT
Found at i:18808093 original size:28 final size:28
Alignment explanation
Indices: 18808062--18808158 Score: 124
Period size: 28 Copynumber: 3.5 Consensus size: 28
18808052 AAAGCAGAGA
*
18808062 AGAGAAAGAAAAACAAGAGAAGAAGATG
1 AGAGAAAGAAAAACAAAAGAAGAAGATG
*
18808090 AGAGAAAGAAAAGCAAAAGAAGAAGA-G
1 AGAGAAAGAAAAACAAAAGAAGAAGATG
* * * *
18808117 AAGAGAAATAAAACCAAAAGAAGAAAATA
1 -AGAGAAAGAAAAACAAAAGAAGAAGATG
18808146 AGAGAAAGAAAAA
1 AGAGAAAGAAAAA
18808159 TAAGAGGTTG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.02
28 58 0.98
ACGTcount: A:0.69, C:0.04, G:0.24, T:0.03
Consensus pattern (28 bp):
AGAGAAAGAAAAACAAAAGAAGAAGATG
Found at i:18809339 original size:27 final size:27
Alignment explanation
Indices: 18809262--18809345 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
18809252 ATGGAAAGGT
**
18809262 GAAAGCAGAGAAGAGAAAGAAATGCAA
1 GAAAGCAGAGAAGAGAAAGAAAAACAA
** * *
18809289 GAGAAGTTGAGTAGAAAAAGAAAAACAA
1 GA-AAGCAGAGAAGAGAAAGAAAAACAA
*
18809317 GAAAGCGGAGAAGAGAAAGAAAAACAA
1 GAAAGCAGAGAAGAGAAAGAAAAACAA
18809344 GA
1 GA
18809346 GGTTGATGAA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
27 25 0.54
28 21 0.46
ACGTcount: A:0.61, C:0.06, G:0.29, T:0.05
Consensus pattern (27 bp):
GAAAGCAGAGAAGAGAAAGAAAAACAA
Found at i:18809356 original size:27 final size:26
Alignment explanation
Indices: 18809269--18809357 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 26
18809259 GGTGAAAGCA
**
18809269 GAGAAGAGAAAGAAATGCAAGAGAAGTT
1 GAGAAGAGAAAGAAAAACAAGAG--GTT
* * * **
18809297 GAGTAGAAAAAGAAAAACAAGAAAGCG
1 GAGAAGAGAAAGAAAAACAAG-AGGTT
18809324 GAGAAGAGAAAGAAAAACAAGAGGTT
1 GAGAAGAGAAAGAAAAACAAGAGGTT
18809350 GATGAAGA
1 GA-GAAGA
18809358 TGAAGATGAA
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
26 4 0.09
27 25 0.53
28 17 0.36
29 1 0.02
ACGTcount: A:0.57, C:0.04, G:0.30, T:0.08
Consensus pattern (26 bp):
GAGAAGAGAAAGAAAAACAAGAGGTT
Found at i:18809958 original size:28 final size:28
Alignment explanation
Indices: 18809914--18809967 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
18809904 CAAAACCTAG
* *
18809914 AACCCTAAACTCTAAACATGTAACCCCA
1 AACCCTAAACTCCAAACATATAACCCCA
*
18809942 AACCCTAAA-TCACAAACTTATAACCC
1 AACCCTAAACTC-CAAACATATAACCC
18809968 ATAACCTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 2 0.09
28 20 0.91
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.19
Consensus pattern (28 bp):
AACCCTAAACTCCAAACATATAACCCCA
Found at i:18810569 original size:28 final size:28
Alignment explanation
Indices: 18810527--18810612 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
18810517 ATGGAAACGT
*
18810527 GAAAGCAGAGAAGAGAAAGAAAAGCAAGC
1 GAAA-CAGAGAAGAGAAAGAAAAGCAAGA
** *
18810556 GAAGTAGAGTAGAGAAAGAAAAGCAAGA
1 GAAACAGAGAAGAGAAAGAAAAGCAAGA
* *
18810584 GAAACAGAGAAGAGAAATAAAAACAAGA
1 GAAACAGAGAAGAGAAAGAAAAGCAAGA
18810612 G
1 G
18810613 GTTGACAAAG
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
28 45 0.94
29 3 0.06
ACGTcount: A:0.60, C:0.07, G:0.29, T:0.03
Consensus pattern (28 bp):
GAAACAGAGAAGAGAAAGAAAAGCAAGA
Found at i:18811182 original size:7 final size:7
Alignment explanation
Indices: 18811170--18811198 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
18811160 ATTTTTTTGG
18811170 AGAAGAT
1 AGAAGAT
18811177 AGAAGAT
1 AGAAGAT
18811184 AGAAGAT
1 AGAAGAT
18811191 AGAAGAT
1 AGAAGAT
18811198 A
1 A
18811199 TTTAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.28, T:0.14
Consensus pattern (7 bp):
AGAAGAT
Found at i:18811543 original size:28 final size:27
Alignment explanation
Indices: 18811507--18811590 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 27
18811497 ACATGAAAGG
18811507 AGAGAAGAGAAAGAAAAGCAAGAGAAGT
1 AGAGAAGAGAAAGAAAA-CAAGAGAAGT
* * *
18811535 AGAGGAGAGAAAGAAACACAAAAGAAGC
1 AGAGAAGAGAAAGAAA-ACAAGAGAAGT
18811563 AGAGAAGAGAAAGAAAAACAAGAGAAGT
1 AGAGAAGAGAAAG-AAAACAAGAGAAGT
18811591 GTAACATCCC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 44 0.92
29 4 0.08
ACGTcount: A:0.62, C:0.06, G:0.30, T:0.02
Consensus pattern (27 bp):
AGAGAAGAGAAAGAAAACAAGAGAAGT
Found at i:18815311 original size:28 final size:28
Alignment explanation
Indices: 18815280--18815405 Score: 135
Period size: 28 Copynumber: 4.5 Consensus size: 28
18815270 AGGAGAGAAA
* * *
18815280 AGAAAGAAAGACTAGAGAAGTAGAGGAG
1 AGAAAGAAAAACAAGAGAAGCAGAGGAG
* *
18815308 AGAAAGAAACACAAGAGAAGCAGAGAAG
1 AGAAAGAAAAACAAGAGAAGCAGAGGAG
* * *
18815336 TGAAAGAAAAACAAAAGAAGCAAAGGAG
1 AGAAAGAAAAACAAGAGAAGCAGAGGAG
** * * *
18815364 AGAAAGAAACGCAAGAGAAACAAAGCAG
1 AGAAAGAAAAACAAGAGAAGCAGAGGAG
18815392 AGAAAGAAAAACAA
1 AGAAAGAAAAACAA
18815406 AAGGTTGATG
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.62, C:0.09, G:0.27, T:0.02
Consensus pattern (28 bp):
AGAAAGAAAAACAAGAGAAGCAGAGGAG
Found at i:18815333 original size:56 final size:56
Alignment explanation
Indices: 18815273--18815408 Score: 173
Period size: 56 Copynumber: 2.4 Consensus size: 56
18815263 ACATGAAAGG
* * * * * * *
18815273 AGAGAAAAGAAAGAAAGACTAGAGAAGTAGAGGAGAGAAAGAAACACAAGAGAAGC
1 AGAGAAGAGAAAGAAAAACAAAAGAAGCAAAGGAGAGAAAGAAACACAAGAGAAAC
* *
18815329 AGAGAAGTGAAAGAAAAACAAAAGAAGCAAAGGAGAGAAAGAAACGCAAGAGAAAC
1 AGAGAAGAGAAAGAAAAACAAAAGAAGCAAAGGAGAGAAAGAAACACAAGAGAAAC
* *
18815385 AAAGCAGAGAAAGAAAAACAAAAG
1 AGAGAAGAGAAAGAAAAACAAAAG
18815409 GTTGATGAAG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.62, C:0.08, G:0.27, T:0.02
Consensus pattern (56 bp):
AGAGAAGAGAAAGAAAAACAAAAGAAGCAAAGGAGAGAAAGAAACACAAGAGAAAC
Found at i:18815382 original size:15 final size:13
Alignment explanation
Indices: 18815357--18815400 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
18815347 CAAAAGAAGC
*
18815357 AAAGGAGAGAAAG
1 AAAGCAGAGAAAG
*
18815370 AAACGCAAGAGAAAC
1 AAA-GC-AGAGAAAG
18815385 AAAGCAGAGAAAG
1 AAAGCAGAGAAAG
18815398 AAA
1 AAA
18815401 AACAAAAGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 13 0.50
14 3 0.12
15 10 0.38
ACGTcount: A:0.64, C:0.09, G:0.27, T:0.00
Consensus pattern (13 bp):
AAAGCAGAGAAAG
Found at i:18816044 original size:7 final size:7
Alignment explanation
Indices: 18816032--18816065 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
18816022 AACCTTAAAT
*
18816032 TTTAGGA
1 TTTAGGG
18816039 TTTAGGG
1 TTTAGGG
18816046 TTTAGGG
1 TTTAGGG
18816053 TTTAGGG
1 TTTAGGG
18816060 TTTAGG
1 TTTAGG
18816066 ATTCATGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:18816075 original size:21 final size:21
Alignment explanation
Indices: 18816032--18816076 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
18816022 AACCTTAAAT
* *
18816032 TTTAGGATTTAGGGTTTAGGG
1 TTTAGGATTTAGGATTCAGGG
* *
18816053 TTTAGGGTTTAGGATTCATGG
1 TTTAGGATTTAGGATTCAGGG
18816074 TTT
1 TTT
18816077 GAGTTCAAGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.02, G:0.33, T:0.47
Consensus pattern (21 bp):
TTTAGGATTTAGGATTCAGGG
Found at i:18816076 original size:14 final size:14
Alignment explanation
Indices: 18816032--18816068 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
18816022 AACCTTAAAT
18816032 TTTAGGATTTAGGG
1 TTTAGGATTTAGGG
*
18816046 TTTAGGGTTTAGGG
1 TTTAGGATTTAGGG
18816060 TTTAGGATT
1 TTTAGGATT
18816069 CATGGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (14 bp):
TTTAGGATTTAGGG
Found at i:18817516 original size:26 final size:26
Alignment explanation
Indices: 18817487--18817541 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
18817477 TTTGCCACAT
* *
18817487 ATACTGTTATTGGTAGCTTCGCTGCG
1 ATACTGTTACTGGCAGCTTCGCTGCG
* *
18817513 ATACTTTTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTCGCTGCG
18817539 ATA
1 ATA
18817542 TTGGTGTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTCGCTGCG
Found at i:18823664 original size:45 final size:45
Alignment explanation
Indices: 18823600--18823780 Score: 362
Period size: 45 Copynumber: 4.0 Consensus size: 45
18823590 TTAAAATTTG
18823600 CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
1 CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
18823645 CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
1 CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
18823690 CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
1 CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
18823735 CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
1 CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
18823780 C
1 C
18823781 TAGTTATAAA
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.42
Consensus pattern (45 bp):
CAAAATCCTTTGTTTTTTATGTGTATCATCCATACCCTCTTAGAA
Found at i:18825224 original size:40 final size:39
Alignment explanation
Indices: 18825164--18825384 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 39
18825154 AAGTATAAAC
* * * *
18825164 AGGGCCACGTATGTGCAACCAGATGTACCGAAATACAAGT
1 AGGGGCACGTATGTGCAATCAG-GGTACCGAAGTACAAGT
* * *
18825204 AGGGGCACGTATGTGCAACCAGATGTACCGAAATACAAGT
1 AGGGGCACGTATGTGCAATCAG-GGTACCGAAGTACAAGT
18825244 AGGGGCACGTATGTGCAATCATGGGTACCGAAGTACAAGT
1 AGGGGCACGTATGTGCAATCA-GGGTACCGAAGTACAAGT
*
18825284 AGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAGC
1 AGGGGCACGTATGTGCAATCA-GGGTACCGAAGTACAAGT
* **
18825324 AGGGGCACGTATATGCAATCAGGGATACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGG-TACCGAAGTACAAGT
*
18825364 AGAGGCACGTATGTGCAATCA
1 AGGGGCACGTATGTGCAATCA
18825385 TGTATAATTA
Statistics
Matches: 169, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 3 0.02
40 165 0.98
41 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.17
Consensus pattern (39 bp):
AGGGGCACGTATGTGCAATCAGGGTACCGAAGTACAAGT
Found at i:18825326 original size:20 final size:20
Alignment explanation
Indices: 18825266--18825328 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
18825256 GTGCAATCAT
*
18825266 GGGTACCGAAGTACAAGTAG
1 GGGTACCGAAGTACAAGCAG
* * * *
18825286 GGGCA-CGTATGTGCAATCAG
1 GGGTACCG-AAGTACAAGCAG
18825306 GGGTACCGAAGTACAAGCAG
1 GGGTACCGAAGTACAAGCAG
18825326 GGG
1 GGG
18825329 CACGTATATG
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.38, T:0.14
Consensus pattern (20 bp):
GGGTACCGAAGTACAAGCAG
Found at i:18825346 original size:20 final size:20
Alignment explanation
Indices: 18825284--18825347 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
18825274 AAGTACAAGT
*
18825284 AGGGGCACGTATGTGCAATC
1 AGGGGCACGTATATGCAATC
* * *
18825304 AGGGGTACCG-A-AGTACAAGC
1 AGGGGCA-CGTATA-TGCAATC
18825324 AGGGGCACGTATATGCAATC
1 AGGGGCACGTATATGCAATC
18825344 AGGG
1 AGGG
18825348 ATACCGAAGT
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
19 2 0.06
20 28 0.85
21 3 0.09
ACGTcount: A:0.30, C:0.19, G:0.36, T:0.16
Consensus pattern (20 bp):
AGGGGCACGTATATGCAATC
Found at i:18827739 original size:18 final size:18
Alignment explanation
Indices: 18827706--18827741 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
18827696 CATCAGCAGA
**
18827706 CAACGTCAATTGCGTATT
1 CAACGTCAATCACGTATT
18827724 CAACGTCAATCACGTATT
1 CAACGTCAATCACGTATT
18827742 TCAAAAGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (18 bp):
CAACGTCAATCACGTATT
Found at i:18831091 original size:43 final size:43
Alignment explanation
Indices: 18831036--18831177 Score: 118
Period size: 43 Copynumber: 3.3 Consensus size: 43
18831026 GCTAAGTATC
18831036 GCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTT
1 GCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTT
* **** * * *
18831079 GCACA-TTCAGTGCC-ATT-TTGGT-AGC-C-GTATATATAATATT
1 GCACACTT-AGTGCCAATTATT--TAACCACTGCGGCTTTAGTCTT
18831119 CGCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTT
1 -GCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTT
18831163 GCACA-TTCAGTGCCA
1 GCACACTT-AGTGCCA
18831178 TTTTGGTAGC
Statistics
Matches: 72, Mismatches: 16, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
40 7 0.10
41 15 0.21
42 16 0.22
43 27 0.38
44 7 0.10
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (43 bp):
GCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTT
Found at i:18831132 original size:41 final size:41
Alignment explanation
Indices: 18831079--18831218 Score: 110
Period size: 41 Copynumber: 3.4 Consensus size: 41
18831069 CTTTAGTCTT
18831079 GCACATTCAGTGCCATTTTGGTAGCCGTATATATAATATTC
1 GCACATTCAGTGCCATTTTGGTAGCCGTATATATAATATTC
* **** * * *
18831120 GCACACTT-AGTGCCAATTATT--TAACCACTGCGGCTTTAGTCTT-
1 GCACA-TTCAGTGCC-ATT-TTGGT-AGC-C-GTATATATAATATTC
18831163 GCACATTCAGTGCCATTTTGGTAGCCGTATATATAATATTC
1 GCACATTCAGTGCCATTTTGGTAGCCGTATATATAATATTC
18831204 GCACACTT-AGTGCCA
1 GCACA-TTCAGTGCCA
18831219 CATATATTTG
Statistics
Matches: 72, Mismatches: 16, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
40 7 0.10
41 27 0.38
42 16 0.22
43 15 0.21
44 7 0.10
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (41 bp):
GCACATTCAGTGCCATTTTGGTAGCCGTATATATAATATTC
Found at i:18831136 original size:84 final size:84
Alignment explanation
Indices: 18831034--18831227 Score: 370
Period size: 84 Copynumber: 2.3 Consensus size: 84
18831024 TGGCTAAGTA
18831034 TCGCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTTGCACATTCAGTGCCATTTTG
1 TCGCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTTGCACATTCAGTGCCATTTTG
18831099 GTAGCCGTATATATAATAT
66 GTAGCCGTATATATAATAT
18831118 TCGCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTTGCACATTCAGTGCCATTTTG
1 TCGCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTTGCACATTCAGTGCCATTTTG
18831183 GTAGCCGTATATATAATAT
66 GTAGCCGTATATATAATAT
18831202 TCGCACACTTAGTGCCACATATATTT
1 TCGCACACTTAGTGCCA-AT-TATTT
18831228 GATCCACATT
Statistics
Matches: 108, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
84 101 0.94
85 2 0.02
86 5 0.05
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (84 bp):
TCGCACACTTAGTGCCAATTATTTAACCACTGCGGCTTTAGTCTTGCACATTCAGTGCCATTTTG
GTAGCCGTATATATAATAT
Found at i:18835074 original size:20 final size:20
Alignment explanation
Indices: 18835049--18835194 Score: 91
Period size: 20 Copynumber: 7.3 Consensus size: 20
18835039 GAAGTATAAA
*
18835049 CAGGGGCACATATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* * * *
18835069 CAGGGGTACCG-AAGTACAAG
1 CAGGGGCA-CGTATGTGCAAT
18835089 CAGGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* * * * *
18835109 CATGGGTATCG-AAGTACAAG
1 CAGGGGCA-CGTATGTGCAAT
* *
18835129 CAGGGGCACGTATGAGGAAT
1 CAGGGGCACGTATGTGCAAT
* * * *
18835149 CAGGGGTACCG-AAGTACAAA
1 CAGGGGCA-CGTATGTGCAAT
*
18835169 CAAGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
18835189 CAGGGG
1 CAGGGG
18835195 TACCAAGTAC
Statistics
Matches: 87, Mismatches: 33, Indels: 12
0.66 0.25 0.09
Matches are distributed among these distances:
19 6 0.07
20 76 0.87
21 5 0.06
ACGTcount: A:0.32, C:0.18, G:0.34, T:0.16
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCAAT
Found at i:18835094 original size:40 final size:40
Alignment explanation
Indices: 18835039--18835229 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
18835029 TGAAATTACT
* *
18835039 GAAGTATAAACAGGGGCACATATGTGCAATCAGGGGTACC
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACC
* * *
18835079 GAAGTACAAGCAGGGGCACGTATGTGCAATCATGGGTATC
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACC
* * *
18835119 GAAGTACAAGCAGGGGCACGTATGAGGAATCAGGGGTACC
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACC
*
18835159 GAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTACC
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACC
* *
18835199 -AAGTACAAA-TGGGGCCATGTATGTGCAATCA
1 GAAGTACAAACAGGGG-CACGTATGTGCAATCA
18835230 TGTATAATTA
Statistics
Matches: 134, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 3 0.02
39 24 0.18
40 107 0.80
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.17
Consensus pattern (40 bp):
GAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACC
Found at i:18842214 original size:42 final size:42
Alignment explanation
Indices: 18842167--18842320 Score: 229
Period size: 42 Copynumber: 3.7 Consensus size: 42
18842157 TACACCTGCT
* * *
18842167 TTAAGCCTGCTAAACTTATAGTCCGAATTTATTTCACTGGCA
1 TTAAGCCTGCTAAACGTAAAGTCTGAATTTATTTCACTGGCA
* *
18842209 TTAAGCCTGCTAGACGTAAAGTCTGAATTTATTTCACCGGCA
1 TTAAGCCTGCTAAACGTAAAGTCTGAATTTATTTCACTGGCA
*
18842251 TTAAGCCTGCTAAACGTAAAGTCTGAATTTATTTCACTAGCA
1 TTAAGCCTGCTAAACGTAAAGTCTGAATTTATTTCACTGGCA
*
18842293 TTAAGCATGC-AAGACGTAAAGTCTGAAT
1 TTAAGCCTGCTAA-ACGTAAAGTCTGAAT
18842321 GGTTTCACTG
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 2 0.02
42 100 0.98
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (42 bp):
TTAAGCCTGCTAAACGTAAAGTCTGAATTTATTTCACTGGCA
Found at i:18842280 original size:84 final size:84
Alignment explanation
Indices: 18842167--18842320 Score: 254
Period size: 84 Copynumber: 1.8 Consensus size: 84
18842157 TACACCTGCT
* * * * *
18842167 TTAAGCCTGCTAAACTTATAGTCCGAATTTATTTCACTGGCATTAAGCCTGCTAGACGTAAAGTC
1 TTAAGCCTGCTAAACGTAAAGTCCGAATTTATTTCACTAGCATTAAGCATGCAAGACGTAAAGTC
18842232 TGAATTTATTTCACCGGCA
66 TGAATTTATTTCACCGGCA
*
18842251 TTAAGCCTGCTAAACGTAAAGTCTGAATTTATTTCACTAGCATTAAGCATGCAAGACGTAAAGTC
1 TTAAGCCTGCTAAACGTAAAGTCCGAATTTATTTCACTAGCATTAAGCATGCAAGACGTAAAGTC
18842316 TGAAT
66 TGAAT
18842321 GGTTTCACTG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 64 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (84 bp):
TTAAGCCTGCTAAACGTAAAGTCCGAATTTATTTCACTAGCATTAAGCATGCAAGACGTAAAGTC
TGAATTTATTTCACCGGCA
Found at i:18862206 original size:43 final size:43
Alignment explanation
Indices: 18862159--18862282 Score: 119
Period size: 43 Copynumber: 3.2 Consensus size: 43
18862149 AAATTTATAA
18862159 TAAATACTTTAAATATAATTGCCACACGTAAAAAAATATAAAT
1 TAAATACTTTAAATATAATTGCCACACGTAAAAAAATATAAAT
* * **
18862202 TAAATACATT--AT-TAATT-----TC--AAAAATTTAT-AA-
1 TAAATACTTTAAATATAATTGCCACACGTAAAAAAATATAAAT
*
18862233 TAAATGCTTTAAATATAATTGCCACACGTAAAAAAATATAAAT
1 TAAATACTTTAAATATAATTGCCACACGTAAAAAAATATAAAT
18862276 TAAATAC
1 TAAATAC
18862283 AATACAAGGA
Statistics
Matches: 59, Mismatches: 10, Indels: 24
0.63 0.11 0.26
Matches are distributed among these distances:
31 8 0.14
32 2 0.03
33 10 0.17
34 5 0.08
35 1 0.02
39 1 0.02
40 5 0.08
41 10 0.17
42 2 0.03
43 15 0.25
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.33
Consensus pattern (43 bp):
TAAATACTTTAAATATAATTGCCACACGTAAAAAAATATAAAT
Found at i:18862236 original size:74 final size:75
Alignment explanation
Indices: 18862134--18862283 Score: 284
Period size: 74 Copynumber: 2.0 Consensus size: 75
18862124 TATAACTTAA
18862134 ATTATTAATTTACAAAAATTTATAATAAATACTTTAAATATAATTGCCACACGTAAAAAAATATA
1 ATTATTAATTTACAAAAATTTATAATAAATACTTTAAATATAATTGCCACACGTAAAAAAATATA
18862199 AATTAAATAC
66 AATTAAATAC
*
18862209 ATTATTAATTT-CAAAAATTTATAATAAATGCTTTAAATATAATTGCCACACGTAAAAAAATATA
1 ATTATTAATTTACAAAAATTTATAATAAATACTTTAAATATAATTGCCACACGTAAAAAAATATA
18862273 AATTAAATAC
66 AATTAAATAC
18862283 A
1 A
18862284 ATACAAGGAT
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
74 63 0.85
75 11 0.15
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.35
Consensus pattern (75 bp):
ATTATTAATTTACAAAAATTTATAATAAATACTTTAAATATAATTGCCACACGTAAAAAAATATA
AATTAAATAC
Found at i:18867751 original size:12 final size:12
Alignment explanation
Indices: 18867734--18867762 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
18867724 GTCACATATT
18867734 TACATGTCATGA
1 TACATGTCATGA
18867746 TACATGTCATGA
1 TACATGTCATGA
18867758 TACAT
1 TACAT
18867763 ATCTTTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (12 bp):
TACATGTCATGA
Found at i:18867817 original size:17 final size:18
Alignment explanation
Indices: 18867797--18867837 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
18867787 ATAAACATAA
18867797 ATCATTCATTTCAT-TAT-
1 ATCATT-ATTTCATGTATC
*
18867814 ATCAATATTTCATGTATC
1 ATCATTATTTCATGTATC
18867832 ATCATT
1 ATCATT
18867838 TTCATGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 7 0.35
17 8 0.40
18 5 0.25
ACGTcount: A:0.32, C:0.17, G:0.02, T:0.49
Consensus pattern (18 bp):
ATCATTATTTCATGTATC
Found at i:18875727 original size:20 final size:20
Alignment explanation
Indices: 18875702--18875739 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18875692 ACATTTCACA
18875702 ATAAAAA-TTAAAATAAAAGC
1 ATAAAAATTTAAAA-AAAAGC
18875722 ATAAAAATTTAAAAAAAA
1 ATAAAAATTTAAAAAAAA
18875740 TTCCTATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (20 bp):
ATAAAAATTTAAAAAAAAGC
Found at i:18884548 original size:19 final size:19
Alignment explanation
Indices: 18884500--18884550 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
18884490 TTTGACGGGA
18884500 TAAAT-TTTAAAAATAATT
1 TAAATATTTAAAAATAATT
* **
18884518 TTAATATATTAAAGTTAATT
1 TAAATAT-TTAAAAATAATT
18884538 TAAATATTTAAAA
1 TAAATATTTAAAA
18884551 GAGTTATATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 4 0.15
19 6 0.23
20 16 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TAAATATTTAAAAATAATT
Found at i:18889913 original size:11 final size:11
Alignment explanation
Indices: 18889874--18889923 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
18889864 CTTCTCCTAA
18889874 TTTCCTTTGTT
1 TTTCCTTTGTT
* * *
18889885 TTTCATTGGGT
1 TTTCCTTTGTT
18889896 TTT-CTTTGTT
1 TTTCCTTTGTT
18889906 TTTCCTTT-TAT
1 TTTCCTTTGT-T
18889917 TTTCCTT
1 TTTCCTT
18889924 AGGATTGAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
10 8 0.26
11 23 0.74
ACGTcount: A:0.04, C:0.16, G:0.10, T:0.70
Consensus pattern (11 bp):
TTTCCTTTGTT
Found at i:18896449 original size:80 final size:80
Alignment explanation
Indices: 18896320--18896509 Score: 231
Period size: 80 Copynumber: 2.4 Consensus size: 80
18896310 GGGTATAACA
* * * *
18896320 GTCATTTTACCCTATGGGGTATTTTGGACATTTTACCCTATAGGAGTATTATGGTCATTCTACCT
1 GTCATTTTACCCTATGGGGTATTTCGGTCATTCTACCCTATAGGAGTATTATAGTCATTCTACCT
**
18896385 TATAGGGGTATTTTT
66 TATAGGGGTATTTCG
* * * *
18896400 GTCATTTTACCCTATAAGGGTATTTCGGTCATTCTACCCCT-T-GGGGTATTTTAGTCATTTTAC
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTCTA-CCCTATAGGAGTATTATAGTCATTCTAC
*
18896463 CTTATGGGGGTATTTCG
64 CTTATAGGGGTATTTCG
*
18896480 GTCATTTTACCCTATTGGGGTATCTCGGTC
1 GTCATTTTACCCTA-TGGGGTATTTCGGTC
18896510 GGGGGTATCT
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 72 0.77
81 18 0.19
82 4 0.04
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (80 bp):
GTCATTTTACCCTATGGGGTATTTCGGTCATTCTACCCTATAGGAGTATTATAGTCATTCTACCT
TATAGGGGTATTTCG
Found at i:18896474 original size:53 final size:53
Alignment explanation
Indices: 18896320--18896502 Score: 226
Period size: 53 Copynumber: 3.4 Consensus size: 53
18896310 GGGTATAACA
* * * *
18896320 GTCATTTTACCCTATGGGGTATTTTGGACATTTTACCCTATAGGAGTATTAT-G
1 GTCATTCTACCCTATGGGGTATTTTAGTCATTTTACCCTATAGGGGTATT-TCG
* * *
18896373 GTCATTCTACCTTATAGGGGTATTTTTGTCATTTTACCCTATAAGGGTATTTCG
1 GTCATTCTACCCTAT-GGGGTATTTTAGTCATTTTACCCTATAGGGGTATTTCG
* *
18896427 GTCATTCTACCCCT-TGGGGTATTTTAGTCATTTTACCTTATGGGGGTATTTCG
1 GTCATTCTA-CCCTATGGGGTATTTTAGTCATTTTACCCTATAGGGGTATTTCG
*
18896480 GTCATTTTACCCTATTGGGGTAT
1 GTCATTCTACCCTA-TGGGGTAT
18896503 CTCGGTCGGG
Statistics
Matches: 113, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
52 4 0.04
53 56 0.50
54 50 0.44
55 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (53 bp):
GTCATTCTACCCTATGGGGTATTTTAGTCATTTTACCCTATAGGGGTATTTCG
Found at i:18896509 original size:27 final size:27
Alignment explanation
Indices: 18896320--18896502 Score: 210
Period size: 27 Copynumber: 6.9 Consensus size: 27
18896310 GGGTATAACA
18896320 GTCATTTTACCCTAT-GGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTTG
* * *
18896346 GACATTTTACCCTATAGGAGTATTATG
1 GTCATTTTACCCTATAGGGGTATTTTG
* * *
18896373 GTCATTCTACCTTATAGGGGTATTTTT
1 GTCATTTTACCCTATAGGGGTATTTTG
* *
18896400 GTCATTTTACCCTATAAGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTTG
* *
18896427 GTCATTCTACCCCT-T-GGGGTATTTTA
1 GTCATTTTA-CCCTATAGGGGTATTTTG
* * *
18896453 GTCATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTTG
*
18896480 GTCATTTTACCCTATTGGGGTAT
1 GTCATTTTACCCTATAGGGGTAT
18896503 CTCGGTCGGG
Statistics
Matches: 129, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
25 3 0.02
26 31 0.24
27 91 0.71
28 4 0.03
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTTG
Found at i:18896578 original size:26 final size:27
Alignment explanation
Indices: 18896510--18896581 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
18896500 TATCTCGGTC
* *
18896510 GGGGGTATCTCGGTTATTTTACCCTAT
1 GGGGGTATTTCGGTCATTTTACCCTAT
*
18896537 GGGGGTATTTCAGTCATTTTACCCTAT
1 GGGGGTATTTCGGTCATTTTACCCTAT
18896564 -GGGGTATTTCGGTCATTT
1 GGGGGTATTTCGGTCATTT
18896582 ATTGACCTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 17 0.41
27 24 0.59
ACGTcount: A:0.15, C:0.17, G:0.26, T:0.42
Consensus pattern (27 bp):
GGGGGTATTTCGGTCATTTTACCCTAT
Found at i:18902777 original size:22 final size:20
Alignment explanation
Indices: 18902752--18902798 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 20
18902742 ATACTAACGA
*
18902752 TAATAATAAACCTAAAAAATAC
1 TAATAATAAA-ATAAAAAA-AC
18902774 TAATAATAAAATAAAAAAAC
1 TAATAATAAAATAAAAAAAC
18902794 TAATA
1 TAATA
18902799 CTATGTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 7 0.29
21 7 0.29
22 10 0.42
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (20 bp):
TAATAATAAAATAAAAAAAC
Found at i:18902872 original size:15 final size:15
Alignment explanation
Indices: 18902831--18902879 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
18902821 AGAATAAGAT
18902831 TAAACATAAAT-ATAA
1 TAAACA-AAATAATAA
18902846 TAAACAAAATAATAA
1 TAAACAAAATAATAA
*
18902861 TAAACAAAATAAAAA
1 TAAACAAAATAATAA
18902876 TAAA
1 TAAA
18902880 AAGAAGGGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 4 0.12
15 28 0.88
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACAAAATAATAA
Found at i:18906905 original size:36 final size:36
Alignment explanation
Indices: 18906844--18907005 Score: 173
Period size: 36 Copynumber: 4.5 Consensus size: 36
18906834 ACATCGATAT
* * * *
18906844 TCCAACCAAAATACACCAGAAGCTCATAACAGCTAA
1 TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
* *
18906880 TCCATCCAAAACACGCCGGATGCTCATAAGAGCTAA
1 TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
* * * * *
18906916 CCCATTCGAAAA-AAACTAGATGCTCATAAGAGCTAT
1 TCCA-TCCAAAACACACCAGATGCTCATAAGAGCTAA
* **
18906952 TCTATCTGAAACACACCAGATGCTCATAAGAGCTAA
1 TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
*
18906988 TCCATCCGAAACACACCA
1 TCCATCCAAAACACACCA
18907006 AAATATAGAG
Statistics
Matches: 102, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
35 5 0.05
36 91 0.89
37 6 0.06
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.18
Consensus pattern (36 bp):
TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
Found at i:18909355 original size:14 final size:15
Alignment explanation
Indices: 18909328--18909358 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18909318 TAAAAATTAA
18909328 ATTAAAAACAAAAAT
1 ATTAAAAACAAAAAT
*
18909343 ATTAAAAAGAAAAAT
1 ATTAAAAACAAAAAT
18909358 A
1 A
18909359 AAAATGACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.19
Consensus pattern (15 bp):
ATTAAAAACAAAAAT
Found at i:18911791 original size:17 final size:17
Alignment explanation
Indices: 18911759--18911791 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
18911749 CAACCAAAGA
18911759 TAACAAATTTTATAAAT
1 TAACAAATTTTATAAAT
18911776 TAACACAATTTT-TAAA
1 TAACA-AATTTTATAAA
18911792 GTTTTACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (17 bp):
TAACAAATTTTATAAAT
Found at i:18915185 original size:17 final size:17
Alignment explanation
Indices: 18915163--18915204 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
18915153 TTGCTAGGTG
18915163 TATGGATAAATATATTT
1 TATGGATAAATATATTT
**
18915180 TATGGATTGATATATTT
1 TATGGATAAATATATTT
*
18915197 TAAGGATA
1 TATGGATA
18915205 GATCTTTAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (17 bp):
TATGGATAAATATATTT
Found at i:18920375 original size:40 final size:40
Alignment explanation
Indices: 18920331--18920418 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 40
18920321 AAGTGTAACC
* * *
18920331 AGGGCACGAAAGTGAAATCAGGGGTACTGAAGTACAAACA
1 AGGGCACAAAAGTGAAATCAAGGGTACCGAAGTACAAACA
* *
18920371 AGGGCACAAAAGTGCAATCAAGTGTACCGAAGTACAAACA
1 AGGGCACAAAAGTGAAATCAAGGGTACCGAAGTACAAACA
*
18920411 GGGGCACA
1 AGGGCACA
18920419 TATGTCCAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.42, C:0.18, G:0.28, T:0.11
Consensus pattern (40 bp):
AGGGCACAAAAGTGAAATCAAGGGTACCGAAGTACAAACA
Found at i:18920392 original size:20 final size:20
Alignment explanation
Indices: 18920331--18920392 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 20
18920321 AAGTGTAACC
* *
18920331 AGGGCACGAAAGTGAAATCA
1 AGGGCACAAAAGTGCAATCA
* * ** * *
18920351 GGGGTACTGAAGTACAAACA
1 AGGGCACAAAAGTGCAATCA
18920371 AGGGCACAAAAGTGCAATCA
1 AGGGCACAAAAGTGCAATCA
18920391 AG
1 AG
18920393 TGTACCGAAG
Statistics
Matches: 29, Mismatches: 13, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.16, G:0.29, T:0.11
Consensus pattern (20 bp):
AGGGCACAAAAGTGCAATCA
Found at i:18932727 original size:21 final size:21
Alignment explanation
Indices: 18932692--18932743 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
18932682 AATCATATCT
18932692 TCTAAGATT--ATATATCATA
1 TCTAAGATTGCATATATCATA
18932711 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
18932732 TCTAAGATTGCA
1 TCTAAGATTGCA
18932744 GATCCTCGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.29
21 22 0.71
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:18933268 original size:44 final size:44
Alignment explanation
Indices: 18933220--18933649 Score: 215
Period size: 44 Copynumber: 9.8 Consensus size: 44
18933210 GATCTAAGGT
** *
18933220 TTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGAC
1 TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTATCGAC
* * * ** *
18933264 TTTAACCTGCTCCACTGCAACTTCAAGG-AGACAGGATTCGCCAAC
1 TTTAATCTGCTCCACTGCAACTTC-AGGAAGATAAGATT-ATCGAC
* * * * * *
18933309 TTCAGTCTAC-CTCACTTCAACTTCAGGAGGATAAGACTTGAT-TAC
1 TTTAATCTGCTC-CACTGCAACTTCAGGAAGATAAGA-TT-ATCGAC
* * * *
18933354 -TTAGTGTGCTCCACTGCAACTTCAGGGAGATAAGACTA--GA-
1 TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTATCGAC
*** * * * * **
18933394 TGCGATCGGCT-CTCTACAACTTCA-GAGAGATAAGATCTA-AGGT
1 TTTAATCTGCTCCACTGCAACTTCAGGA-AGATAAGAT-TATCGAC
** * *
18933437 TTTAATCCACTCCACTGCAACTTCAAGAAGATAGGATTATCGAC
1 TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTATCGAC
* * * *
18933481 TTTAA-CTTGCTCCACTGCAACTTCAGGGATATAGGATTGTCGAC
1 TTTAATC-TGCTCCACTGCAACTTCAGGAAGATAAGATTATCGAC
* * * *
18933525 TTTAATCTGCTCCCCTGCAACCTCAGGGAGATAAGATT-TGCCATC
1 TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTAT-CGA-C
* * * * *
18933570 TTTAGTCTGGCT-CACTGCAACTTTAGGAGGATAAGACTT-GCTTAC
1 TTTAATCT-GCTCCACTGCAACTTCAGGAAGATAAGA-TTATC-GAC
* *
18933615 -TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
18933650 CTAGATGCGA
Statistics
Matches: 293, Mismatches: 71, Indels: 44
0.72 0.17 0.11
Matches are distributed among these distances:
39 1 0.00
40 19 0.06
41 7 0.02
42 2 0.01
43 14 0.05
44 179 0.61
45 63 0.22
46 8 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTATCGAC
Found at i:18933417 original size:217 final size:219
Alignment explanation
Indices: 18933102--18933505 Score: 634
Period size: 217 Copynumber: 1.9 Consensus size: 219
18933092 TTAGTATGCC
* * * * *
18933102 CACTGCAATTTCAGGGGGATAAGGCTTGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGGA
1 CACTGCAACTTCAGGAGGATAAGACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGGA
* * **
18933167 TAAGACTCATGTGATCTACTCTACTGTAACTTCAAAGAGATAAGATCTAAGGTTTTAATCCACTC
66 TAAGACTCATGCGATCGACTCTACTACAACTTCAAAGAGATAAGATCTAAGGTTTTAATCCACTC
*
18933232 CACTGCAACTTCAGGAAGATAGGATTATCGACTTTAACCTGCTCCACTGCAACTTCAAGGAGACA
131 CACTGCAACTTCAAGAAGATAGGATTATCGACTTTAACCTGCTCCACTGCAACTTCAAGGAGACA
18933297 GGATTCGCCAACTTCAGTCTACCT
196 GGATTCGCCAACTTCAGTCTACCT
* *
18933321 CACTTCAACTTCAGGAGGATAAGACTTGATTACTT-AGTGTGCTCCACTGCAACTTCAGGGA-GA
1 CACTGCAACTTCAGGAGGATAAGACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGGA
* * *
18933384 TAAGACTAGATGCGATCGGCTCT-CTACAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
66 TAAGACT-CATGCGATCGACTCTACTACAACTTCAAAGAGATAAGATCTAAGGTTTTAATCCACT
*
18933448 CCACTGCAACTTCAAGAAGATAGGATTATCGACTTTAACTTGCTCCACTGCAACTTCA
130 CCACTGCAACTTCAAGAAGATAGGATTATCGACTTTAACCTGCTCCACTGCAACTTCA
18933506 GGGATATAGG
Statistics
Matches: 168, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
217 103 0.61
218 36 0.21
219 29 0.17
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (219 bp):
CACTGCAACTTCAGGAGGATAAGACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGGA
TAAGACTCATGCGATCGACTCTACTACAACTTCAAAGAGATAAGATCTAAGGTTTTAATCCACTC
CACTGCAACTTCAAGAAGATAGGATTATCGACTTTAACCTGCTCCACTGCAACTTCAAGGAGACA
GGATTCGCCAACTTCAGTCTACCT
Found at i:18933452 original size:84 final size:84
Alignment explanation
Indices: 18933360--18933726 Score: 269
Period size: 84 Copynumber: 4.3 Consensus size: 84
18933350 TTACTTAGTG
*
18933360 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATC-GGCTCTCTACAACTTCAGAGAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGAT-CGATCTGGCTCACTACAACTTCAGAGAGA
18933424 TAAGATCTAAGGTTTTAATC
65 TAAGATCTAAGGTTTTAATC
** * * * * ** * * * *
18933444 CACTCCACTGCAACTTCAAGAAGATAGGATTATCGACTTTAACTTGCTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTA--GA-TCGATCTGGCT-CACTACAACTTCAGAG
* * ** **
18933509 ATATAGGAT-TGTCGACTTTAATC
62 AGATAAGATCT-AAGGTTTTAATC
* * * * * * *
18933532 TGCTCCCCTGCAACCTCAGGGAGATAAGATTTGCCATCTTTAGTCTGGCTCACTGCAACTTTAG-
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTAG--ATC--GA-TCTGGCTCACTACAACTTCAGA
* * *
18933596 GAGGATAAGA-CT-TGCTTACTTAGTC
61 GA-GATAAGATCTAAGGTT--TTAATC
* *
18933621 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCT-GCTCTCTACAACTTCAGAGATA
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGAT-CGATCTGGCTCACTACAACTTCAGAGAGA
*
18933685 TAAGATCCAAGGTTTTAATC
65 TAAGATCTAAGGTTTTAATC
18933705 TGCTCCACTGCAACTTCAGGGA
1 TGCTCCACTGCAACTTCAGGGA
18933727 AACAAGGCTT
Statistics
Matches: 214, Mismatches: 50, Indels: 38
0.71 0.17 0.13
Matches are distributed among these distances:
84 73 0.34
85 6 0.03
86 9 0.04
87 10 0.05
88 56 0.26
89 55 0.26
90 5 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (84 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATCGATCTGGCTCACTACAACTTCAGAGAGAT
AAGATCTAAGGTTTTAATC
Found at i:18933588 original size:217 final size:217
Alignment explanation
Indices: 18933133--18933607 Score: 606
Period size: 217 Copynumber: 2.2 Consensus size: 217
18933123 AGGCTTGCTT
* * * **
18933133 TCTTGAGTCTGCTCCACTGCAACTTCAGGGAGGATAAGACTCATGTGATCTACTCTACTGTAACT
1 TCTTTAGTCTGCTCCACTGCAACTTCAGGGAGGATAAGACTCATGCGATCGACTCTACTACAACT
*
18933198 TCAAAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGA
66 TCAAAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAAGAAGATAGGATTATCGA
* *
18933263 CTTTAACCTGCTCCACTGCAACTTCAAGGAGACAGGATTCGCCAACTTCAGTCTACCTCACTTCA
131 CTTTAACCTGCTCCACTGCAACTTCAAGGAGACAGGATTCGCCAACTTCAATCTACCTCACTGCA
*
18933328 ACTTCAGGAGGATAAGACTTGA
196 ACCTCAGGAGGATAAGACTTGA
* * *
18933350 T-TACTTAGTGTGCTCCACTGCAACTTCAGGGA-GATAAGACTAGATGCGATCGGCTCT-CTACA
1 TCT--TTAGTCTGCTCCACTGCAACTTCAGGGAGGATAAGACT-CATGCGATCGACTCTACTACA
*
18933412 ACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAAGAAGATAGGATTAT
63 ACTTCAAAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAAGAAGATAGGATTAT
* * * * * * * * *
18933477 CGACTTTAACTTGCTCCACTGCAACTTCAGGGATATAGGATT-GTCGACTTTAATCT-GCTCCCC
128 CGACTTTAACCTGCTCCACTGCAACTTCAAGGAGACAGGATTCGCCAACTTCAATCTACCT-CAC
*
18933540 TGCAACCTCAGG-GAGATAAGATTTGCCA
192 TGCAACCTCAGGAG-GATAAGACTTG--A
*
18933568 TCTTTAGTCTGGCT-CACTGCAACTTTA-GGAGGATAAGACT
1 TCTTTAGTCT-GCTCCACTGCAACTTCAGGGAGGATAAGACT
18933608 TGCTTACTTA
Statistics
Matches: 223, Mismatches: 25, Indels: 20
0.83 0.09 0.07
Matches are distributed among these distances:
215 3 0.01
216 36 0.16
217 141 0.63
218 42 0.19
219 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (217 bp):
TCTTTAGTCTGCTCCACTGCAACTTCAGGGAGGATAAGACTCATGCGATCGACTCTACTACAACT
TCAAAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAAGAAGATAGGATTATCGA
CTTTAACCTGCTCCACTGCAACTTCAAGGAGACAGGATTCGCCAACTTCAATCTACCTCACTGCA
ACCTCAGGAGGATAAGACTTGA
Found at i:18933650 original size:44 final size:44
Alignment explanation
Indices: 18933057--18933651 Score: 209
Period size: 44 Copynumber: 13.7 Consensus size: 44
18933047 CTCTAATCCA
* * * * * * *
18933057 CTCCACTACAACTT-AGGGAGACAGGATTTGTTTATTTAGTATG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAGTCTG
* * * *
18933100 C-CCACTGCAATTTCAGGGGGATAAGGCTTGCTTTCTTGAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTT-AGTCTG
* * * *
18933144 CTCCACTGCAACTTCAGGGAGGATAAGAC-T-CAT-GTGA-TCTA
1 CTCCACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAGTCTG
* * ** * * * **
18933185 CTCTACTGTAACTTCAAAGAGATAAGATCTAAGGTT--TTAATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTACTTAGTCTG
* * * * **
18933229 CTCCACTGCAACTTCAGGAAGATAGGA-TT-ATCGACTTTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCT-TAC-TTAGTCTG
* * * ** *
18933273 CTCCACTGCAACTTCAAGGAGACAGGA-TTCGCCAACTTCAGTCTA
1 CTCCACTGCAACTTCAGGGAGATAAGACTT-GCTTACTT-AGTCTG
* * *
18933318 C-CTCACTTCAACTTCA-GGAGGATAAGACTTGATTACTTAGTGTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAGTCTG
* * * * *
18933362 CTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCGG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAGTCTG
* * * * * * **
18933403 CT-CTCTACAACTTCAGAGAGATAAGATCTAAGGTT--TTAATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTACTTAGTCTG
* * * * * *
18933446 CTCCACTGCAACTTCAAGAAGATAGGA-TT-ATCGACTTTA-ACTTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCT-TAC-TTAGTC-TG
* * * *
18933490 CTCCACTGCAACTTCAGGGATATAGGA-TTG-TCGACTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCT-TAC-TTAGTCTG
* * * *
18933534 CTCCCCTGCAACCTCAGGGAGATAAGATTTGC-CATCTTTAGTCTGG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-C-TTAGTCT-G
*
18933580 CT-CACTGCAACTTTA-GGAGGATAAGACTTGCTTACTTAGTCTG
1 CTCCACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAGTCTG
18933623 CTCCACTGCAACTTCAGGGAGATAAGACT
1 CTCCACTGCAACTTCAGGGAGATAAGACT
18933652 AGATGCGATC
Statistics
Matches: 412, Mismatches: 98, Indels: 83
0.69 0.17 0.14
Matches are distributed among these distances:
40 30 0.07
41 26 0.06
42 17 0.04
43 30 0.07
44 210 0.51
45 86 0.21
46 13 0.03
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAGTCTG
Found at i:18933658 original size:261 final size:261
Alignment explanation
Indices: 18933229--18933722 Score: 781
Period size: 261 Copynumber: 1.9 Consensus size: 261
18933219 TTTTAATCCA
*
18933229 CTCCACTGCAACTTCAGGAAGATAGGATTATCGACTTTAACCTGCTCCACTGCAACTTCAAGGAG
1 CTCCACTGCAACTTCAGGAAGATAGGATTATCGACTTTAACCTGCTCCACTGCAACCTCAAGGAG
* *
18933294 ACAGGATTCGCCAACTTCAGTCTACCTCACTTCAACTTCAGGAGGATAAGACTTGATTACTTAGT
66 ACAAGATTCGCCAACTTCAGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATTACTTAGT
*
18933359 GTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCGGCTCTCTACAACTTCAGAGAGA
131 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCGGCTCTCTACAACTTCAGAGAGA
*
18933424 TAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAAGAAGATAGGATTATCGACTTTAACTT
196 TAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAAGAAGATAGGATTATCGACTTTAACTT
18933489 G
261 G
* * * * * *
18933490 CTCCACTGCAACTTCAGGGATATAGGATTGTCGACTTTAATCTGCTCCCCTGCAACCTCAGGGAG
1 CTCCACTGCAACTTCAGGAAGATAGGATTATCGACTTTAACCTGCTCCACTGCAACCTCAAGGAG
* * * * ** * *
18933555 ATAAGATTTGCCATCTTTAGTCTGGCTCACTGCAACTTTAGGAGGATAAGACTTGCTTACTTAGT
66 ACAAGATTCGCCAACTTCAGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATTACTTAGT
* *
18933620 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGATA
131 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCGGCTCTCTACAACTTCAGAGAGA
**
18933685 TAAGATCCAAGGTTTTAATCTGCTCCACTGCAACTTCA
196 TAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCA
18933723 GGGAAACAAG
Statistics
Matches: 210, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
261 210 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (261 bp):
CTCCACTGCAACTTCAGGAAGATAGGATTATCGACTTTAACCTGCTCCACTGCAACCTCAAGGAG
ACAAGATTCGCCAACTTCAGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATTACTTAGT
CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCGGCTCTCTACAACTTCAGAGAGA
TAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAAGAAGATAGGATTATCGACTTTAACTT
G
Found at i:18933794 original size:132 final size:131
Alignment explanation
Indices: 18933657--18934000 Score: 338
Period size: 132 Copynumber: 2.6 Consensus size: 131
18933647 AGACTAGATG
* * * * *
18933657 CGATCTGCT-CTCTACAACTTCAGAGATATAAGATC-CAAGGT-TTTAATCTGCTCCACTGCAAC
1 CGATCTGCTCCACTACAACTT-AGAGAGATAAGATCACAA--TCTTCAACCTACTCCACTGCAAC
*
18933719 TTCAGGGAAACAAGGCTTGGTGGCTTAAATCTGGCTTCCCACT-TCTTGGAAAGATATA-ATTTG
63 -TCAGGGAAACAAGGCTTGGTGGCTTAAATCT-ACTTCCCACTATCTTGGAAAGATA-AGATTTG
18933782 CCGTTTT
125 CCGTTTT
** * **
18933789 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTC
1 CGATCTGCTCCACTACAACTTAGAGAGATAAGATC-ACAATCTTCAACCTACTCCACTGCAACTC
* *
18933854 AGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTC
65 AGGGAAACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTT
*
18933919 CT
130 TT
** * ** * * * * ***
18933921 AAATCTACTCCACTACTGCTTAGGGAGATAAGATCTACGATCCTCAACCTACTCCGCTGTTGCTC
1 CGATCTGCTCCACTACAACTTAGAGAGATAAGATC-ACAATCTTCAACCTACTCCACTGCAACTC
*
18933986 AGGGAGACAAGGCTT
65 AGGGAAACAAGGCTT
18934001 AGTGTTTCAC
Statistics
Matches: 185, Mismatches: 21, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
131 10 0.05
132 148 0.80
133 24 0.13
134 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (131 bp):
CGATCTGCTCCACTACAACTTAGAGAGATAAGATCACAATCTTCAACCTACTCCACTGCAACTCA
GGGAAACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTTT
T
Found at i:18933950 original size:44 final size:44
Alignment explanation
Indices: 18933791--18933954 Score: 127
Period size: 44 Copynumber: 3.7 Consensus size: 44
18933781 GCCGTTTTCG
* * * * *
18933791 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATTTGCAGTCTTAA
* * * * ** ** *
18933835 ACCTACTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATTTGCAGTCTTAA
* * *
18933879 ATCTACTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCGTCCTAA
1 ATCTAC-T-CCACTACTGCTTAGG-GAGATAAGATTTGCAGTCTTAA
18933923 ATCTACTCCACTACTGCTTAGGGAGATAAGAT
1 ATCTACTCCACTACTGCTTAGGGAGATAAGAT
18933955 CTACGATCCT
Statistics
Matches: 88, Mismatches: 26, Indels: 12
0.70 0.21 0.10
Matches are distributed among these distances:
42 6 0.07
43 4 0.05
44 69 0.78
45 4 0.05
46 5 0.06
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
ATCTACTCCACTACTGCTTAGGGAGATAAGATTTGCAGTCTTAA
Found at i:18933973 original size:44 final size:44
Alignment explanation
Indices: 18933796--18933975 Score: 120
Period size: 44 Copynumber: 4.1 Consensus size: 44
18933786 TTTCGATCTG
* * *
18933796 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACGATCCTAAACCTA
* * * * * * * *
18933840 CTCCACTGCTGCTCAGGGAGACAAG-GCT-TGGTGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACGAT--CCTAAACCTA
* * * *
18933884 CTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCG-TCCTAAATCTA
1 C-T-CCACTACTGCTTAGG-GAGATAAGATCT-ACGATCCTAAACCTA
*
18933928 CTCCACTACTGCTTAGGGAGATAAGATCTACGATCCTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACGATCCTAAACCTA
18933972 CTCC
1 CTCC
18933976 GCTGTTGCTC
Statistics
Matches: 102, Mismatches: 22, Indels: 24
0.69 0.15 0.16
Matches are distributed among these distances:
42 7 0.07
43 8 0.08
44 75 0.74
45 5 0.05
46 6 0.06
47 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTACGATCCTAAACCTA
Found at i:18935302 original size:19 final size:21
Alignment explanation
Indices: 18935257--18935297 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
18935247 CTCCATTTTC
18935257 CTTTTCTTTTTCTTTTTATCA
1 CTTTTCTTTTTCTTTTTATCA
18935278 CTTTTTCTTCTTT-TTTTTAT
1 C-TTTTCTT-TTTCTTTTTAT
18935298 ATTTTGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 1 0.06
22 14 0.78
23 3 0.17
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (21 bp):
CTTTTCTTTTTCTTTTTATCA
Found at i:18941432 original size:29 final size:29
Alignment explanation
Indices: 18941390--18941448 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
18941380 GATTAAAATA
*
18941390 TACATATGATTTACAAATAATTTTTTGGG
1 TACATATGATTTACAAATAAATTTTTGGG
18941419 TACATATGATTTACAAATAAATTTTTGGG
1 TACATATGATTTACAAATAAATTTTTGGG
18941448 T
1 T
18941449 TATGGGACGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.44
Consensus pattern (29 bp):
TACATATGATTTACAAATAAATTTTTGGG
Found at i:18941784 original size:4 final size:4
Alignment explanation
Indices: 18941775--18941850 Score: 64
Period size: 4 Copynumber: 18.8 Consensus size: 4
18941765 ATATTTGTTT
* * * *
18941775 TAAA TAAA TAAA TAAA TAAA TAAA AACAA CAAA TATA TATA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA-AA TAAA TAAA TAAA TAAA TAAA
* * *
18941824 -AAC TAAT TAAA AAAA TAAAA TAAA TAA
1 TAAA TAAA TAAA TAAA T-AAA TAAA TAA
18941851 TTACATTATG
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
3 2 0.03
4 50 0.85
5 7 0.12
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:18941808 original size:25 final size:27
Alignment explanation
Indices: 18941780--18941850 Score: 83
Period size: 25 Copynumber: 2.7 Consensus size: 27
18941770 TGTTTTAAAT
18941780 AAATAAATAAATAAATAAAAAC-AA-C
1 AAATAAATAAATAAATAAAAACTAATC
* * *
18941805 AAATATATATATAAATAAAAACTAATT
1 AAATAAATAAATAAATAAAAACTAATC
*
18941832 AAAAAAATAAAATAAATAA
1 AAATAAAT-AAATAAATAA
18941851 TTACATTATG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
25 20 0.54
26 2 0.05
27 6 0.16
28 9 0.24
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (27 bp):
AAATAAATAAATAAATAAAAACTAATC
Found at i:18941887 original size:49 final size:50
Alignment explanation
Indices: 18941832--18941948 Score: 193
Period size: 49 Copynumber: 2.3 Consensus size: 50
18941822 AAAACTAATT
18941832 AAAAAAATAAAATAAATAATTACATTATGGAAGTTAATTAA-TTTAAAAA
1 AAAAAAATAAAATAAATAATTACATTATGGAAGTTAATTAATTTTAAAAA
*
18941881 AAAAAAATAAAAGAAATAATTACATTATGGAAGTTAATTAATTTTAAAAA
1 AAAAAAATAAAATAAATAATTACATTATGGAAGTTAATTAATTTTAAAAA
18941931 AAGAAAAA-AAAACTAAAT
1 AA-AAAAATAAAA-TAAAT
18941949 TGAACTGAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
49 40 0.63
50 14 0.22
51 9 0.14
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (50 bp):
AAAAAAATAAAATAAATAATTACATTATGGAAGTTAATTAATTTTAAAAA
Found at i:18942512 original size:23 final size:22
Alignment explanation
Indices: 18942469--18942526 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
18942459 AAAGGGTATC
* *
18942469 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
18942490 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
18942513 TACATATCATATCT
1 TACAAATCATATCT
18942527 AATATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Done.