Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 60 of 141
Found at i:19508983 original size:22 final size:21
Alignment explanation
Indices: 19508955--19508996 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
19508945 AAGTAGGACC
*
19508955 CTGTTATGCATATTTGATTATT
1 CTGTTATACATATTTG-TTATT
*
19508977 CTGTTATATATATTTGTTAT
1 CTGTTATACATATTTGTTAT
19508997 CTATATGCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.24, C:0.07, G:0.12, T:0.57
Consensus pattern (21 bp):
CTGTTATACATATTTGTTATT
Found at i:19513346 original size:20 final size:19
Alignment explanation
Indices: 19513321--19513414 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 19
19513311 TACGGGATAT
19513321 CACTTTGGTGCCTCTGTTAG
1 CACTTTGGTGCCTCTGTT-G
* *
19513341 CACTTTTGTGCCTCTGTTTC
1 CACTTTGGTGCCTCTG-TTG
*
19513361 CACTTTGGTGTCTCTGATTG
1 CACTTTGGTGCCTCTG-TTG
** * *
19513381 CACAATCGTGCCTCTATCTG
1 CACTTTGGTGCCTCTGT-TG
19513401 CACTTTGGTGCCTC
1 CACTTTGGTGCCTC
19513415 AGTTACGCAT
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
19 1 0.02
20 55 0.95
21 2 0.03
ACGTcount: A:0.11, C:0.29, G:0.20, T:0.40
Consensus pattern (19 bp):
CACTTTGGTGCCTCTGTTG
Found at i:19513365 original size:40 final size:40
Alignment explanation
Indices: 19513321--19513419 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
19513311 TACGGGATAT
** * * *
19513321 CACTTTGGTGCCTCTGTTAGCACTTTTGTGCCTCTGTTTC
1 CACTTTGGTGCCTCTGTTAGCACAATCGTGCCTCTATCTC
* *
19513361 CACTTTGGTGTCTCTGATT-GCACAATCGTGCCTCTATCTG
1 CACTTTGGTGCCTCTG-TTAGCACAATCGTGCCTCTATCTC
*
19513401 CACTTTGGTGCCTCAGTTA
1 CACTTTGGTGCCTCTGTTA
19513420 CGCATCTGTG
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
39 2 0.04
40 44 0.92
41 2 0.04
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.40
Consensus pattern (40 bp):
CACTTTGGTGCCTCTGTTAGCACAATCGTGCCTCTATCTC
Found at i:19514456 original size:25 final size:26
Alignment explanation
Indices: 19514428--19514479 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19514418 ACAGTGATAC
19514428 ATAACATAAAGCA-AACAGTCATTTT
1 ATAACATAAAGCATAACAGTCATTTT
** *
19514453 ATAACATAGGGCATAACATTCATTTT
1 ATAACATAAAGCATAACAGTCATTTT
19514479 A
1 A
19514480 CCACATGGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (26 bp):
ATAACATAAAGCATAACAGTCATTTT
Found at i:19514485 original size:26 final size:27
Alignment explanation
Indices: 19514441--19514504 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
19514431 ACATAAAGCA
*
19514441 AACAGTCATTTTATAACAT-AGGGCAT
1 AACAGTCATTTTACAACATGAGGGCAT
* * *
19514467 AACATTCATTTTACCACATGGGGGCAT
1 AACAGTCATTTTACAACATGAGGGCAT
*
19514494 AATAGTCATTT
1 AACAGTCATTT
19514505 CATATCAGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (27 bp):
AACAGTCATTTTACAACATGAGGGCAT
Found at i:19521882 original size:29 final size:29
Alignment explanation
Indices: 19521835--19521897 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
19521825 AATTCACGGC
19521835 AACTCAGTAATTTGCTAACTTATGAGCAT
1 AACTCAGTAATTTGCTAACTTATGAGCAT
19521864 AACTCAGTAATTT-CTTAACTTATGAGCAT
1 AACTCAGTAATTTGC-TAACTTATGAGCAT
19521893 -ACTCA
1 AACTCA
19521898 CCTATCAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
28 6 0.18
29 27 0.82
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (29 bp):
AACTCAGTAATTTGCTAACTTATGAGCAT
Found at i:19523130 original size:21 final size:22
Alignment explanation
Indices: 19523100--19523144 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
19523090 TATTTAACCC
*
19523100 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
19523121 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
19523143 AA
1 AA
19523145 TACTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:19525302 original size:3 final size:3
Alignment explanation
Indices: 19525294--19525322 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
19525284 CTCTGTGGGA
19525294 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
19525323 GTTGCTGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:19526378 original size:20 final size:20
Alignment explanation
Indices: 19526349--19526389 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
19526339 GTGTCTTGAT
19526349 GGTGTGGTGCGA-TAGGCAAG
1 GGTGTGGTGCGAGTAGG-AAG
*
19526369 GGTGTTGTGCGAGTAGGAAG
1 GGTGTGGTGCGAGTAGGAAG
19526389 G
1 G
19526390 CACAGTGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.20, C:0.07, G:0.51, T:0.22
Consensus pattern (20 bp):
GGTGTGGTGCGAGTAGGAAG
Found at i:19539137 original size:89 final size:90
Alignment explanation
Indices: 19538957--19539185 Score: 256
Period size: 90 Copynumber: 2.6 Consensus size: 90
19538947 GTCAAAGGGT
* *
19538957 TTTTTTGATGCATTTTGACAA--TACAAGTATTCAATTGAGTGTAAAAAAAATCAAGGGCTTAAT
1 TTTTTTGATGCATTTTGA-AAGCT-CAAGTACTCAATTGAGTGAAAAAAAAATCAAGGGCTTAAT
* *
19539020 TGCTTGATTTGAAAAAGTTTGAGAGTC
64 TGCTTCATTTGAAAAAGTTTAAGAGTC
* * ***
19539047 TTTTTT-ATGCATTTT-AAATGTTCAAGTACTCAATTGAGTGCAAAAAAAA-GGGGGGCTTAATT
1 TTTTTTGATGCATTTTGAAA-GCTCAAGTACTCAATTGAGTGAAAAAAAAATCAAGGGCTTAATT
*
19539109 GCTTTTCTTTTGAAAAAGTTTAAG-GTC
65 GC--TTCATTTGAAAAAGTTTAAGAGTC
*
19539136 TTTTTTGTTGCATTTTGAAAGCTCAAGTAC-CTAATTGAGTGAAAAAAAAA
1 TTTTTTGATGCATTTTGAAAGCTCAAGTACTC-AATTGAGTGAAAAAAAAA
19539186 AGAGATAAAG
Statistics
Matches: 120, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
87 2 0.02
88 13 0.11
89 44 0.37
90 58 0.48
91 3 0.03
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (90 bp):
TTTTTTGATGCATTTTGAAAGCTCAAGTACTCAATTGAGTGAAAAAAAAATCAAGGGCTTAATTG
CTTCATTTGAAAAAGTTTAAGAGTC
Found at i:19539629 original size:10 final size:10
Alignment explanation
Indices: 19539611--19539653 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
19539601 TATTGTTACC
*
19539611 TTTTCCTTTT
1 TTTTTCTTTT
19539621 TTTTTC--TT
1 TTTTTCTTTT
19539629 TTTTTCTTTT
1 TTTTTCTTTT
*
19539639 TCTTTCTTTT
1 TTTTTCTTTT
19539649 TTTTT
1 TTTTT
19539654 TTGAATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 8 0.29
10 20 0.71
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:19539637 original size:18 final size:18
Alignment explanation
Indices: 19539611--19539655 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
19539601 TATTGTTACC
* *
19539611 TTTTCCTTTTTTTTTCTT
1 TTTTTCTTTTTCTTTCTT
19539629 TTTTTCTTTTTCTTTCTT
1 TTTTTCTTTTTCTTTCTT
19539647 TTTTT-TTTT
1 TTTTTCTTTT
19539656 GAATTAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (18 bp):
TTTTTCTTTTTCTTTCTT
Found at i:19539640 original size:14 final size:14
Alignment explanation
Indices: 19539616--19539653 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
19539606 TTACCTTTTC
19539616 CTTTTTTTTTCTTT
1 CTTTTTTTTTCTTT
19539630 -TTTTCTTTTTCTTT
1 CTTTT-TTTTTCTTT
19539644 CTTTTTTTTT
1 CTTTTTTTTT
19539654 TTGAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.18
14 14 0.64
15 4 0.18
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (14 bp):
CTTTTTTTTTCTTT
Found at i:19539654 original size:24 final size:24
Alignment explanation
Indices: 19539610--19539655 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
19539600 CTATTGTTAC
19539610 CTTTTCCTTTTTTTTTCTTTTTTT
1 CTTTTCCTTTTTTTTTCTTTTTTT
* *
19539634 CTTTTTCTTTCTTTTT-TTTTTT
1 CTTTTCCTTTTTTTTTCTTTTTT
19539656 GAATTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (24 bp):
CTTTTCCTTTTTTTTTCTTTTTTT
Found at i:19545177 original size:18 final size:18
Alignment explanation
Indices: 19545141--19545179 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
19545131 GAAAAAGTTA
*
19545141 TTAGGCTAAAAAATGAGC
1 TTAGGCTAAAAAATAAGC
19545159 TTAGG-TAAAAAATTAAGC
1 TTAGGCTAAAAAA-TAAGC
19545177 TTA
1 TTA
19545180 TTTAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.46, C:0.08, G:0.18, T:0.28
Consensus pattern (18 bp):
TTAGGCTAAAAAATAAGC
Found at i:19548497 original size:26 final size:26
Alignment explanation
Indices: 19548468--19548533 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
19548458 TCAATAATGC
* *
19548468 TCACACGAGTTGTGAAATAGGCCTAT
1 TCACACGAGCTGTGAAATAAGCCTAT
* *
19548494 TCACACGAGCTGTGGAATAAGCCTAC
1 TCACACGAGCTGTGAAATAAGCCTAT
* *
19548520 TCATACCAGCTGTG
1 TCACACGAGCTGTG
19548534 GGTCGGAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (26 bp):
TCACACGAGCTGTGAAATAAGCCTAT
Found at i:19563645 original size:16 final size:16
Alignment explanation
Indices: 19563624--19563691 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
19563614 TTTGGTTCGC
*
19563624 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
19563640 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
19563656 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
19563672 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
19563688 TGTA
1 TGTA
19563692 ATAGCAAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:19563910 original size:16 final size:15
Alignment explanation
Indices: 19563884--19563940 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 15
19563874 TTTATATAAT
19563884 TTAAAATAATTATTA
1 TTAAAATAATTATTA
19563899 TTAAATATAATTTAAATATAA
1 TTAAA-ATAA-TT--AT-T-A
19563920 TTTAAAATAATTATTA
1 -TTAAAATAATTATTA
19563936 TTAAA
1 TTAAA
19563941 TAACATTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
15 10 0.29
16 5 0.14
17 3 0.09
18 2 0.06
19 2 0.06
20 3 0.09
21 5 0.14
22 5 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TTAAAATAATTATTA
Found at i:19563915 original size:11 final size:11
Alignment explanation
Indices: 19563899--19563931 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
19563889 ATAATTATTA
19563899 TTAAATATAAT
1 TTAAATATAAT
19563910 TTAAATATAAT
1 TTAAATATAAT
19563921 TTAAA-ATAAT
1 TTAAATATAAT
19563931 T
1 T
19563932 ATTATTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TTAAATATAAT
Found at i:19569639 original size:18 final size:20
Alignment explanation
Indices: 19569612--19569650 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
19569602 TTTTTTACTA
19569612 AAAAATATAAAT-AAATTAT
1 AAAAATATAAATAAAATTAT
19569631 AAAAA-ATAAATAAAATTAT
1 AAAAATATAAATAAAATTAT
19569650 A
1 A
19569651 TTGAATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAAATATAAATAAAATTAT
Found at i:19570144 original size:21 final size:21
Alignment explanation
Indices: 19570115--19570158 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
19570105 GAAATAATAC
*
19570115 ATATGTATATATAT-GTTGAGT
1 ATATATATATATATAG-TGAGT
19570136 ATATATATATATATAGTGAGT
1 ATATATATATATATAGTGAGT
19570157 AT
1 AT
19570159 TTGGTAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (21 bp):
ATATATATATATATAGTGAGT
Found at i:19575090 original size:27 final size:28
Alignment explanation
Indices: 19575035--19575142 Score: 110
Period size: 28 Copynumber: 3.9 Consensus size: 28
19575025 ATCACTATTC
* * ** *
19575035 TTGGTAGATACCCTCATTGATAATACTT
1 TTGGCAGATACCCTTATTGATCTTGCTT
*
19575063 TT-GCATATACCCTTATTGATCTTGCTT
1 TTGGCAGATACCCTTATTGATCTTGCTT
* * *
19575090 TTGGCGGATACCCTTACTAATCTTGCTT
1 TTGGCAGATACCCTTATTGATCTTGCTT
**
19575118 TTGGCAGATACCCTTAACGATCTTG
1 TTGGCAGATACCCTTATTGATCTTG
19575143 ATAAATTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
27 21 0.32
28 44 0.68
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (28 bp):
TTGGCAGATACCCTTATTGATCTTGCTT
Found at i:19575720 original size:24 final size:24
Alignment explanation
Indices: 19575684--19575734 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
19575674 AGAATTTCGA
*
19575684 AAAGGCCATATCA-AGATACGCCAT
1 AAAGGCCAAATCAGAG-TACGCCAT
19575708 AAAGGCCAAATCAGAGTACGCCAT
1 AAAGGCCAAATCAGAGTACGCCAT
19575732 AAA
1 AAA
19575735 AGCTAGCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.45, C:0.24, G:0.18, T:0.14
Consensus pattern (24 bp):
AAAGGCCAAATCAGAGTACGCCAT
Found at i:19578584 original size:61 final size:61
Alignment explanation
Indices: 19578496--19578658 Score: 220
Period size: 61 Copynumber: 2.7 Consensus size: 61
19578486 TTAACAAAGG
* * * * *
19578496 TTGCCATGAAGGCTTACCCT-TCCAGAGTTCTGCCACAAAGGCGTTCCTTTACATTTAGTAC
1 TTGCCATAAAGGCTT-TCCTGTCTAGAGTTTTGCCACAAAGGCGTTCCTTTACATTTAATAC
* * *
19578557 TTGCCATAAAGGCTTTCCTGTCTAGAGTTTTGGCACAAAGGTGTTGCTTTACATTTAATAC
1 TTGCCATAAAGGCTTTCCTGTCTAGAGTTTTGCCACAAAGGCGTTCCTTTACATTTAATAC
* *
19578618 TCGCCATAAAGGCTTTCTTGTCTAGAGTTTTGCCACAAAGG
1 TTGCCATAAAGGCTTTCCTGTCTAGAGTTTTGCCACAAAGG
19578659 TATTCTTTTA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
60 3 0.03
61 87 0.97
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (61 bp):
TTGCCATAAAGGCTTTCCTGTCTAGAGTTTTGCCACAAAGGCGTTCCTTTACATTTAATAC
Found at i:19578659 original size:61 final size:61
Alignment explanation
Indices: 19578519--19578670 Score: 223
Period size: 61 Copynumber: 2.5 Consensus size: 61
19578509 TTACCCTTCC
* * * *
19578519 AGAGTTCTGCCACAAAGGCGTTCCTTTACATTTAGTACTTGCCATAAAGGCTTTCCTGTCT
1 AGAGTTTTGCCACAAAGGTGTTCCTTTACATTTAATACTCGCCATAAAGGCTTTCCTGTCT
* * *
19578580 AGAGTTTTGGCACAAAGGTGTTGCTTTACATTTAATACTCGCCATAAAGGCTTTCTTGTCT
1 AGAGTTTTGCCACAAAGGTGTTCCTTTACATTTAATACTCGCCATAAAGGCTTTCCTGTCT
* *
19578641 AGAGTTTTGCCACAAAGGTATTCTTTTACA
1 AGAGTTTTGCCACAAAGGTGTTCCTTTACA
19578671 GTCAGTAACA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
61 80 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (61 bp):
AGAGTTTTGCCACAAAGGTGTTCCTTTACATTTAATACTCGCCATAAAGGCTTTCCTGTCT
Found at i:19579358 original size:28 final size:28
Alignment explanation
Indices: 19579310--19579442 Score: 149
Period size: 28 Copynumber: 4.8 Consensus size: 28
19579300 AAAACTATTC
* *
19579310 TTGGCAGATACCTTTATTGATCATACTT
1 TTGGCAGATACCCTTACTGATCATACTT
* *
19579338 TTGGCGGATACCCTTACTGATCAAACTT
1 TTGGCAGATACCCTTACTGATCATACTT
* * *
19579366 TTGACAGATACCCTTACTGATCTTGCTT
1 TTGGCAGATACCCTTACTGATCATACTT
* * * * *
19579394 TTGGTAGATGCCCTTATTGATCTTGCTT
1 TTGGCAGATACCCTTACTGATCATACTT
*
19579422 TTGGCGGATACCCTTACTGAT
1 TTGGCAGATACCCTTACTGAT
19579443 ATTAATAAAT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 88 1.00
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (28 bp):
TTGGCAGATACCCTTACTGATCATACTT
Found at i:19579958 original size:42 final size:43
Alignment explanation
Indices: 19579899--19579991 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 43
19579889 TTTATAGAGC
* *
19579899 ATGCCACAAAGGCCATATCAGAAT-ACCATAGAGGCTAACAAA
1 ATGCCACAAAGGCCATATCAAAATAACCATAAAGGCTAACAAA
* *
19579941 ATGCCATAAAGGCCATATCAAAATACACCATAAAGGCTAGCAAA
1 ATGCCACAAAGGCCATATCAAAATA-ACCATAAAGGCTAACAAA
19579985 ATGCCAC
1 ATGCCAC
19579992 CCAAGAGCCC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 22 0.50
44 22 0.50
ACGTcount: A:0.45, C:0.25, G:0.15, T:0.15
Consensus pattern (43 bp):
ATGCCACAAAGGCCATATCAAAATAACCATAAAGGCTAACAAA
Found at i:19579984 original size:22 final size:20
Alignment explanation
Indices: 19579920--19579986 Score: 62
Period size: 22 Copynumber: 3.1 Consensus size: 20
19579910 GCCATATCAG
*
19579920 AATACCATAGAGGCTAACAA
1 AATACCATAAAGGCTAACAA
* *
19579940 AATGCCATAAAGGCCATATCAA
1 AATACCATAAAGG-C-TAACAA
*
19579962 AATACACCATAAAGGCTAGCAA
1 AAT--ACCATAAAGGCTAACAA
19579984 AAT
1 AAT
19579987 GCCACCCAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 11 0.29
21 1 0.03
22 16 0.42
23 1 0.03
24 9 0.24
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.16
Consensus pattern (20 bp):
AATACCATAAAGGCTAACAA
Found at i:19585687 original size:18 final size:18
Alignment explanation
Indices: 19585642--19585690 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
19585632 CTTTTAAAAA
19585642 TATATCGATACCTATTGAAT
1 TATATCGATACCTATT--AT
*
19585662 TTTATCGATACCATATT-T
1 TATATCGATACC-TATTAT
19585680 TATATCGATAC
1 TATATCGATAC
19585691 TAGTTTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 11 0.42
20 11 0.42
21 4 0.15
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43
Consensus pattern (18 bp):
TATATCGATACCTATTAT
Found at i:19589065 original size:50 final size:50
Alignment explanation
Indices: 19588944--19589177 Score: 271
Period size: 50 Copynumber: 4.7 Consensus size: 50
19588934 CATATCGGTT
* * *
19588944 CCGATGCCATGTCCTAGACATGGTCTTACACTAGCACTCATC--TC-GAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCAGTCTGTG
* * * * * * *
19588991 TCGATGCCACGTCCCATATATGGTCTTACAC-CG-ACTCTTCTCTGTCCGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTC--CTCAGTCTGTG
* **
19589041 CCAATGTTATGTCCCAGACATGGTCTTACACTAGCACTCCTCAGTCTGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCAGTCTGTG
* *
19589091 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACTCCTCGGTCTGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCAGTCTGTG
*
19589141 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCAC
19589178 ACTTATTGCC
Statistics
Matches: 155, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
45 4 0.03
46 1 0.01
47 28 0.18
49 2 0.01
50 115 0.74
51 1 0.01
52 4 0.03
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (50 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCAGTCTGTG
Found at i:19592052 original size:23 final size:24
Alignment explanation
Indices: 19592026--19592077 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
19592016 ATTTCAAATG
* *
19592026 TTTTGACTTTGTTTTTGAGTCAC-
1 TTTTGACTTTGCTTTTGAGTAACA
*
19592049 TTTTCACTTTGCTTTTGAGTAACA
1 TTTTGACTTTGCTTTTGAGTAACA
19592073 TTTTG
1 TTTTG
19592078 CTACACCTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (24 bp):
TTTTGACTTTGCTTTTGAGTAACA
Found at i:19599326 original size:64 final size:62
Alignment explanation
Indices: 19599209--19599328 Score: 161
Period size: 64 Copynumber: 1.9 Consensus size: 62
19599199 CTTACCATAA
* *
19599209 ATCCTTTTCAATAAACCTTTTCATATGTTAACCTTTTTAAGGAAACAACCTTTTCATTTGAT
1 ATCCGTTTCAATAAACCTTTTCATATGTTAACCTTTTCAAGGAAACAACCTTTTCATTTGAT
* * *
19599271 ATCCGTTTCGAATATAACCTTTTCATATGTTAA-CTCTTTCAGGGTAACAATCTTTTCA
1 ATCCGTTTC-AATA-AACCTTTTCATATGTTAACCT-TTTCAAGGAAACAACCTTTTCA
19599329 ACCTTTTCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
62 8 0.16
63 6 0.12
64 36 0.72
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (62 bp):
ATCCGTTTCAATAAACCTTTTCATATGTTAACCTTTTCAAGGAAACAACCTTTTCATTTGAT
Found at i:19601682 original size:20 final size:20
Alignment explanation
Indices: 19601641--19601725 Score: 82
Period size: 20 Copynumber: 4.3 Consensus size: 20
19601631 AGGCACGATT
* **
19601641 GTGCAATCAGAGGTGCCGAA
1 GTGCAAACAGAGGCACCGAA
* *
19601661 GTGCAAACAGAGACACCCAA
1 GTGCAAACAGAGGCACCGAA
* *
19601681 GTG-TAATAGAGGCACCGAA
1 GTGCAAACAGAGGCACCGAA
* *
19601700 GTGTAAACAGAGGCATCGAA
1 GTGCAAACAGAGGCACCGAA
19601720 GTGCAA
1 GTGCAA
19601726 TCTCCTACAA
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
19 15 0.29
20 36 0.71
ACGTcount: A:0.38, C:0.20, G:0.29, T:0.13
Consensus pattern (20 bp):
GTGCAAACAGAGGCACCGAA
Found at i:19601696 original size:19 final size:19
Alignment explanation
Indices: 19601669--19601705 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
19601659 AAGTGCAAAC
19601669 AGAGACACCCAAGTGTAAT
1 AGAGACACCCAAGTGTAAT
* *
19601688 AGAGGCACCGAAGTGTAA
1 AGAGACACCCAAGTGTAA
19601706 ACAGAGGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.19, G:0.27, T:0.14
Consensus pattern (19 bp):
AGAGACACCCAAGTGTAAT
Found at i:19607761 original size:20 final size:20
Alignment explanation
Indices: 19607736--19607841 Score: 90
Period size: 20 Copynumber: 5.3 Consensus size: 20
19607726 GATGAGTAAT
*
19607736 AGAGGCACCGAAGTTCAAAC
1 AGAGGCACCGAAGTGCAAAC
* * **
19607756 AGAGGC-GCGATTGTGCAGTC
1 AGAGGCACCGA-AGTGCAAAC
* *
19607776 AGAGGTACCGAAGTGCAAAT
1 AGAGGCACCGAAGTGCAAAC
* * *
19607796 AAAGACACCGAAGTG-TAAC
1 AGAGGCACCGAAGTGCAAAC
*
19607815 AGAGGCACCGAAATGCAAAC
1 AGAGGCACCGAAGTGCAAAC
19607835 AGAGGCA
1 AGAGGCA
19607842 TGAAAGTGCA
Statistics
Matches: 63, Mismatches: 20, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
19 17 0.27
20 43 0.68
21 3 0.05
ACGTcount: A:0.39, C:0.21, G:0.29, T:0.11
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAAAC
Found at i:19610181 original size:60 final size:60
Alignment explanation
Indices: 19610108--19610288 Score: 353
Period size: 60 Copynumber: 3.0 Consensus size: 60
19610098 GTTGTAGGTG
19610108 AATAATTAGATGAATGAAATAAATTTTAGGAAAAATGATTGAGTATAGACCGAGATAATT
1 AATAATTAGATGAATGAAATAAATTTTAGGAAAAATGATTGAGTATAGACCGAGATAATT
19610168 AATAATTAGATGAATGAAATAAATTTTAGGAAAAATGATTGAGTATAGACCGAGATAATT
1 AATAATTAGATGAATGAAATAAATTTTAGGAAAAATGATTGAGTATAGACCGAGATAATT
*
19610228 AATAATTAGATGAATGAAATAAATTTTAGGAAAAATGATTGAGTCTAGACCGAGATAATT
1 AATAATTAGATGAATGAAATAAATTTTAGGAAAAATGATTGAGTATAGACCGAGATAATT
19610288 A
1 A
19610289 GGTTTTGAGT
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 120 1.00
ACGTcount: A:0.48, C:0.04, G:0.18, T:0.30
Consensus pattern (60 bp):
AATAATTAGATGAATGAAATAAATTTTAGGAAAAATGATTGAGTATAGACCGAGATAATT
Found at i:19614488 original size:24 final size:25
Alignment explanation
Indices: 19614461--19614509 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
19614451 ATAAAAATTC
19614461 AATATA-TATTT-TTATTAAATATAA
1 AATATAGTATTTCTT-TTAAATATAA
19614485 AATATAGTTATTTCTTTTAAATATA
1 AATATAG-TATTTCTTTTAAATATA
19614510 TAATTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.27
26 14 0.64
27 2 0.09
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
AATATAGTATTTCTTTTAAATATAA
Found at i:19617432 original size:27 final size:27
Alignment explanation
Indices: 19617402--19617460 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
19617392 AAATGAATTC
*
19617402 CTTTTAGAGTTTGCCAAAAAGGCTATT
1 CTTTCAGAGTTTGCCAAAAAGGCTATT
* *
19617429 CTTTCAGAGTTTTCCACAAAGGCTATT
1 CTTTCAGAGTTTGCCAAAAAGGCTATT
19617456 CTTTC
1 CTTTC
19617461 CTTACATGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.39
Consensus pattern (27 bp):
CTTTCAGAGTTTGCCAAAAAGGCTATT
Found at i:19623869 original size:21 final size:21
Alignment explanation
Indices: 19623843--19623885 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
19623833 GATGGTTGTT
*
19623843 ATATACTTATAACAACACTTG
1 ATATACTTATAAAAACACTTG
* *
19623864 ATATACTTTTAAAAACATTTG
1 ATATACTTATAAAAACACTTG
19623885 A
1 A
19623886 GATTTAGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (21 bp):
ATATACTTATAAAAACACTTG
Found at i:19625702 original size:29 final size:29
Alignment explanation
Indices: 19625663--19625720 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
19625653 ATTGAAGGCA
19625663 ACATTTTTCAGACAGCAATGACCAAAAAC
1 ACATTTTTCAGACAGCAATGACCAAAAAC
19625692 ACATTTTTCAGACAGCAATGACCAAAAAC
1 ACATTTTTCAGACAGCAATGACCAAAAAC
19625721 TGTGAGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.24, G:0.10, T:0.21
Consensus pattern (29 bp):
ACATTTTTCAGACAGCAATGACCAAAAAC
Found at i:19639949 original size:25 final size:24
Alignment explanation
Indices: 19639921--19639991 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 24
19639911 TTAACAATCC
19639921 CATTATTTAGCTCTTATGAGCATCG
1 CATTATTT-GCTCTTATGAGCATCG
* * * *
19639946 CATTATATGACTCTCATGAGCTTCT
1 CATTATTTG-CTCTTATGAGCATCG
19639971 CGA-TATTTCGCTCTTATGAGC
1 C-ATTATTT-GCTCTTATGAGC
19639992 TTCCCGATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
24 1 0.03
25 34 0.92
26 2 0.05
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (24 bp):
CATTATTTGCTCTTATGAGCATCG
Found at i:19640008 original size:25 final size:26
Alignment explanation
Indices: 19639930--19640043 Score: 78
Period size: 25 Copynumber: 4.5 Consensus size: 26
19639920 CCATTATTTA
* *
19639930 GCTCTTATGAGCATCGC-ATTATATG
1 GCTCTTATGAGCTTCCCGATTATATG
* * * * *
19639955 ACTCTCATGAGCTTCTCGA-TATTTC
1 GCTCTTATGAGCTTCCCGATTATATG
19639980 GCTCTTATGAGCTTCCCGATTA-ATG
1 GCTCTTATGAGCTTCCCGATTATATG
**
19640005 GCTCTCT-TGAGCTTTTTCG-TT-TATG
1 GCTCT-TATGAGC-TTCCCGATTATATG
*
19640030 GCTCGTATGAGCTT
1 GCTCTTATGAGCTT
19640044 TTCGATAATT
Statistics
Matches: 69, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
24 3 0.04
25 58 0.84
26 8 0.12
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (26 bp):
GCTCTTATGAGCTTCCCGATTATATG
Found at i:19640010 original size:50 final size:50
Alignment explanation
Indices: 19639924--19640018 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
19639914 ACAATCCCAT
*
19639924 TATTTAGCTCTTATGAGCATCGCATTATATGACTCTCATGAGCTTCTCGA
1 TATTTAGCTCTTATGAGCATCCCATTATATGACTCTCATGAGCTTCTCGA
* * * *
19639974 TATTTCGCTCTTATGAGCTTCCCGATTA-ATGGCTCTCTTGAGCTT
1 TATTTAGCTCTTATGAGCATCCC-ATTATATGACTCTCATGAGCTT
19640019 TTTCGTTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 35 0.90
51 4 0.10
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (50 bp):
TATTTAGCTCTTATGAGCATCCCATTATATGACTCTCATGAGCTTCTCGA
Found at i:19640056 original size:25 final size:23
Alignment explanation
Indices: 19639956--19640057 Score: 60
Period size: 25 Copynumber: 4.1 Consensus size: 23
19639946 CATTATATGA
* *
19639956 CTCTCATGAGCTTCTCGATATTTCG
1 CTCT-ATGAGCTTCTCGATA-ATGG
*
19639981 CTCTTATGAGCTTCCCGATTAATGG
1 CTC-TATGAGCTTCTCGA-TAATGG
* * * *
19640006 CTCTCTTGAGCTTTTTCGTTTATGG
1 CTCT-ATGAGC-TTCTCGATAATGG
*
19640031 CTCGTATGAGCTTTTCGATAATTGG
1 CTC-TATGAGCTTCTCGATAA-TGG
19640056 CT
1 CT
19640058 TGCAAGAGCT
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
24 9 0.15
25 43 0.72
26 8 0.13
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.42
Consensus pattern (23 bp):
CTCTATGAGCTTCTCGATAATGG
Found at i:19652184 original size:21 final size:21
Alignment explanation
Indices: 19652160--19652204 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
19652150 GAAATAATTC
*
19652160 CCACCCA-ATCCAACCAATACA
1 CCACCCATA-CCAACCAACACA
*
19652181 CCACCCGTACCAACCAACACA
1 CCACCCATACCAACCAACACA
19652202 CCA
1 CCA
19652205 TGTGGGGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.40, C:0.51, G:0.02, T:0.07
Consensus pattern (21 bp):
CCACCCATACCAACCAACACA
Found at i:19652973 original size:27 final size:27
Alignment explanation
Indices: 19652568--19652972 Score: 423
Period size: 27 Copynumber: 15.0 Consensus size: 27
19652558 GGGCATAACA
* *
19652568 GTCATTTTACACCCATAGGGGTATTTCG
1 GTCATTTTAC-CCTATGGGGGTATTTCG
* * *
19652596 GTCATTTTCCCCTTTAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * * *
19652623 ATTATTCTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
19652650 GTTATTCTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * **
19652677 CTCATTCTACCCTATGAGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
19652704 GTCATTTTACCCTATTGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
19652731 GTTATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
19652758 ATTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
19652785 GTCATTTTACCCTATTGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
19652812 GTCATGTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
19652839 GTCATTTTACCCTACGAGGATATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* ** *
19652866 ATCATTTTACCCTGCGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
19652893 GTCATTTTACCTTACGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
** *
19652920 GTCATTTTACCCTATAAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
19652947 GTCATTTTATCCTATGGGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
19652973 ATGTTAGAGT
Statistics
Matches: 321, Mismatches: 56, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
27 312 0.97
28 9 0.03
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:19655131 original size:12 final size:12
Alignment explanation
Indices: 19655114--19655155 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
19655104 ATCCCAATAT
19655114 TCTCTCCTCAAA
1 TCTCTCCTCAAA
*
19655126 TCTCTCC-AAATA
1 TCTCTCCTCAA-A
19655138 TCTCTCCTCAAA
1 TCTCTCCTCAAA
19655150 TCTCTC
1 TCTCTC
19655156 TATGACCAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.24, C:0.40, G:0.00, T:0.36
Consensus pattern (12 bp):
TCTCTCCTCAAA
Found at i:19655134 original size:24 final size:24
Alignment explanation
Indices: 19655109--19655155 Score: 85
Period size: 24 Copynumber: 1.9 Consensus size: 24
19655099 CCCAAATCCC
19655109 AATATTCTCTCCTCAAATCTCTCCA
1 AATA-TCTCTCCTCAAATCTCTCCA
19655134 AATATCTCTCCTCAAATCTCTC
1 AATATCTCTCCTCAAATCTCTC
19655156 TATGACCAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (24 bp):
AATATCTCTCCTCAAATCTCTCCA
Found at i:19655143 original size:14 final size:14
Alignment explanation
Indices: 19655109--19655156 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
19655099 CCCAAATCCC
19655109 AATATTCTCTCCTC-
1 AATA-TCTCTCCTCA
19655123 AA-ATCTCT-C-CA
1 AATATCTCTCCTCA
19655134 AATATCTCTCCTCA
1 AATATCTCTCCTCA
*
19655148 AATCTCTCT
1 AATATCTCT
19655157 ATGACCAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
10 1 0.03
11 3 0.10
12 11 0.38
13 2 0.07
14 12 0.41
ACGTcount: A:0.27, C:0.35, G:0.00, T:0.38
Consensus pattern (14 bp):
AATATCTCTCCTCA
Found at i:19656257 original size:21 final size:21
Alignment explanation
Indices: 19656233--19656274 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
19656223 GAAGTTAAAA
19656233 TGTTTTAATTTCACA-TTAATT
1 TGTTTTAATTTC-CATTTAATT
19656254 TGTTTTAATTTCCATTTAATT
1 TGTTTTAATTTCCATTTAATT
19656275 ACAAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (21 bp):
TGTTTTAATTTCCATTTAATT
Found at i:19661885 original size:21 final size:21
Alignment explanation
Indices: 19661846--19661885 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
19661836 ATTATATAAA
*
19661846 TTAAAAATTACAATTATTTTT
1 TTAAAAATTACAATGATTTTT
* *
19661867 TTAAAATTTATAATGATTT
1 TTAAAAATTACAATGATTT
19661886 ATCAAATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (21 bp):
TTAAAAATTACAATGATTTTT
Found at i:19663085 original size:16 final size:17
Alignment explanation
Indices: 19663060--19663093 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
19663050 TCAAAAAACG
19663060 AAACACCTAAAAATAAC
1 AAACACCTAAAAATAAC
19663077 AAACA-CTAAAAATAAC
1 AAACACCTAAAAATAAC
19663093 A
1 A
19663094 GTCATAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.68, C:0.21, G:0.00, T:0.12
Consensus pattern (17 bp):
AAACACCTAAAAATAAC
Found at i:19668560 original size:17 final size:17
Alignment explanation
Indices: 19668538--19668571 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
19668528 TTAAAAAACC
19668538 CTTCTTGAAATTTCAAA
1 CTTCTTGAAATTTCAAA
**
19668555 CTTCTTGCCATTTCAAA
1 CTTCTTGAAATTTCAAA
19668572 TTTGTACAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (17 bp):
CTTCTTGAAATTTCAAA
Found at i:19669160 original size:45 final size:46
Alignment explanation
Indices: 19669085--19669171 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 46
19669075 AAAAGTGTAG
* * *
19669085 TGTGGGCCTTAGCCCATTACAATATTAGAATCAGAAATAGAATAGA
1 TGTGGGCCTAAGCCCAATACAATATCAGAATCAGAAATAGAATAGA
*
19669131 TGTGGGCCTAAG-CCAATACAATGA-CAGAATCAGTAATAGAA
1 TGTGGGCCTAAGCCCAATACAAT-ATCAGAATCAGAAATAGAA
19669172 ATGCAACAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 24 0.67
46 12 0.33
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (46 bp):
TGTGGGCCTAAGCCCAATACAATATCAGAATCAGAAATAGAATAGA
Found at i:19669440 original size:32 final size:32
Alignment explanation
Indices: 19669387--19669557 Score: 213
Period size: 32 Copynumber: 5.4 Consensus size: 32
19669377 AAATGGCTAC
*
19669387 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATTGGCACA
* * *
19669418 AAGCCATCAGTAACAGTGATATGATCGACACA
1 AAGCCATCAGTAACAGTAATATGATTGGCACA
* *
19669450 CAA-TCATCAGTAACGGTAATATGATTGGCACA
1 -AAGCCATCAGTAACAGTAATATGATTGGCACA
* *
19669482 AAGCCATCAGTTAC-GATAATATGATCGGCACA
1 AAGCCATCAGTAACAG-TAATATGATTGGCACA
* *
19669514 AAGCCATCAGTAACGGTAATATGATTGGCAAA
1 AAGCCATCAGTAACAGTAATATGATTGGCACA
19669546 AAGCCATCAGTA
1 AAGCCATCAGTA
19669558 GCATCACAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
31 13 0.11
32 104 0.87
33 3 0.03
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATTGGCACA
Found at i:19669504 original size:64 final size:64
Alignment explanation
Indices: 19669387--19669557 Score: 240
Period size: 64 Copynumber: 2.7 Consensus size: 64
19669377 AAATGGCTAC
* * *
19669387 AAGCCATAAGT-ACAGTAATATGATTGGCACAAAGCCATCAGTAACAGTGATATGATCGACACA
1 AAGCCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTAACAGTAATATGATCGACACA
* * *
19669450 CAA-TCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTTAC-GATAATATGATCGGCAC
1 -AAGCCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTAACAG-TAATATGATCGACAC
19669513 A
64 A
*
19669514 AAGCCATCAGTAACGGTAATATGATTGGCAAAAAGCCATCAGTA
1 AAGCCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTA
19669558 GCATCACAGC
Statistics
Matches: 95, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
63 9 0.09
64 86 0.91
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (64 bp):
AAGCCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTAACAGTAATATGATCGACACA
Found at i:19669630 original size:27 final size:26
Alignment explanation
Indices: 19669595--19669664 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 26
19669585 TATCGCCGCA
* *
19669595 AAGCTACCAGTAATAGT-ATATGTGGCC
1 AAGCCACCAGTAACAGTGAT-TGTGG-C
*
19669622 AAGCCACCAGTAACAGTGATTGTGGT
1 AAGCCACCAGTAACAGTGATTGTGGC
19669648 AGAGCCACCAGT-ACAGT
1 A-AGCCACCAGTAACAGT
19669665 ACTTCCTCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
26 6 0.16
27 30 0.79
28 2 0.05
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
AAGCCACCAGTAACAGTGATTGTGGC
Found at i:19669813 original size:24 final size:24
Alignment explanation
Indices: 19669729--19669810 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
19669719 CCATGCTCAG
19669729 AATCAGTCATATAAATCACAGACA
1 AATCAGTCATATAAATCACAGACA
** * *
19669753 AATCAGTCATACCATTCACAAACA
1 AATCAGTCATATAAATCACAGACA
*
19669777 AATCAGTCATTTAAATCACAGACA
1 AATCAGTCATATAAATCACAGACA
*
19669801 AATCAATCAT
1 AATCAGTCAT
19669811 TTACACTCGA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.23
Consensus pattern (24 bp):
AATCAGTCATATAAATCACAGACA
Found at i:19669901 original size:27 final size:27
Alignment explanation
Indices: 19669864--19670350 Score: 371
Period size: 27 Copynumber: 18.1 Consensus size: 27
19669854 TTACAGTAAC
*
19669864 TTTACCTTATAGGGGTATTTTGGTCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* * ** *
19669891 TTAACCCTATAGAGGTATTACGATCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* * *
19669918 TTTACCCTATGGGGGTATTTCGATCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* *
19669945 TTTACCCTATTGGGGTATTTTTGTCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* *
19669972 TTTATCCTATGGGGGTATTTTGGTCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* * ***
19669999 TTTATCCTATGGGGGTATTTCACTCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* *
19670026 TTTACCTTATAGGGGTATTTTGGCCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* *
19670053 TCTACCCTAT-GAGGGTATTTCT-ATCAT
1 TTTACCCTATAG-GGGTATTT-TGGTCAT
** * **
19670080 TTTACATTATAAGGGTATTTCAGTCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
*
19670107 TTTACCTTATTA-GGGTATTTTGGTCAT
1 TTTACCCTA-TAGGGGTATTTTGGTCAT
* * *
19670134 TTTACCCTATGGGGGTATTCTAGTCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* * *
19670161 TTTACCTTATAAGGGTATTTCGGTCAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
** *
19670188 TTTACCCTAT-GGTGGTATTACGGTTAT
1 TTTACCCTATAGG-GGTATTTTGGTCAT
* *
19670215 TCTACCCTAT-GAGGGTATTTCGGTCAT
1 TTTACCCTATAG-GGGTATTTTGGTCAT
* * *
19670242 TCTACCCTATGGGGGTATTTTGGTAAT
1 TTTACCCTATAGGGGTATTTTGGTCAT
* * * *
19670269 TTTACCCT-TCGGGGGTATTTCGATAAT
1 TTTACCCTAT-AGGGGTATTTTGGTCAT
* ** *
19670296 TTTACCCT-TCGGAGGTATTTCAGTAAT
1 TTTACCCTATAGG-GGTATTTTGGTCAT
* *
19670323 TTTACCC-ATCGAGGG-ATTTCGGTCAT
1 TTTACCCTATAG-GGGTATTTTGGTCAT
19670349 TT
1 TT
19670351 AACAACCTTT
Statistics
Matches: 380, Mismatches: 67, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
26 17 0.04
27 357 0.94
28 6 0.02
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (27 bp):
TTTACCCTATAGGGGTATTTTGGTCAT
Found at i:19670271 original size:81 final size:81
Alignment explanation
Indices: 19669864--19670350 Score: 434
Period size: 81 Copynumber: 6.0 Consensus size: 81
19669854 TTACAGTAAC
* * * *
19669864 TTTACCTTATAGGGGTATTTTGGTCATT-TAACCCTAT-AGAGGTATTACGATCATTTTACCCTA
1 TTTACCCTATTGGGGTATTTTGGTCATTCT-ACCCTATGAG-GGTATTTCGGTCATTTTACCCTA
*
19669927 TGGGGGTATTTCGATCAT
64 TGGGGGTATTTCGGTCAT
* * * * * *
19669945 TTTACCCTATTGGGGTATTTTTGTCATTTTATCCTATGGGGGTATTTTGGTCATTTTATCCTATG
1 TTTACCCTATTGGGGTATTTTGGTCATTCTACCCTATGAGGGTATTTCGGTCATTTTACCCTATG
**
19670010 GGGGTATTTCACTCAT
66 GGGGTATTTCGGTCAT
* * * ** ** *
19670026 TTTACCTTATAGGGGTATTTTGGCCATTCTACCCTATGAGGGTATTTCTATCATTTTACATTATA
1 TTTACCCTATTGGGGTATTTTGGTCATTCTACCCTATGAGGGTATTTCGGTCATTTTACCCTATG
* *
19670091 AGGGTATTTCAGTCAT
66 GGGGTATTTCGGTCAT
* * * * * *
19670107 TTTACCTTATTAGGGTATTTTGGTCATTTTACCCTATGGGGGTA-TTCTAGTCATTTTACCTTAT
1 TTTACCCTATTGGGGTATTTTGGTCATTCTACCCTATGAGGGTATTTC-GGTCATTTTACCCTAT
**
19670171 AAGGGTATTTCGGTCAT
65 GGGGGTATTTCGGTCAT
** * *
19670188 TTTACCCTA-TGGTGGTATTACGGTTATTCTACCCTATGAGGGTATTTCGGTCATTCTACCCTAT
1 TTTACCCTATTGG-GGTATTTTGGTCATTCTACCCTATGAGGGTATTTCGGTCATTTTACCCTAT
* *
19670252 GGGGGTATTTTGGTAAT
65 GGGGGTATTTCGGTCAT
* * * * * * *
19670269 TTTACCCT-TCGGGGGTATTTCGATAATTTTACCCT-TCG-GAGGTATTTCAGTAATTTTACCC-
1 TTTACCCTAT-TGGGGTATTTTGGTCATTCTACCCTAT-GAG-GGTATTTCGGTCATTTTACCCT
*
19670330 ATCGAGGG-ATTTCGGTCAT
63 AT-GGGGGTATTTCGGTCAT
19670349 TT
1 TT
19670351 AACAACCTTT
Statistics
Matches: 335, Mismatches: 61, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
80 20 0.06
81 308 0.92
82 7 0.02
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (81 bp):
TTTACCCTATTGGGGTATTTTGGTCATTCTACCCTATGAGGGTATTTCGGTCATTTTACCCTATG
GGGGTATTTCGGTCAT
Found at i:19670285 original size:54 final size:54
Alignment explanation
Indices: 19669864--19670350 Score: 464
Period size: 54 Copynumber: 9.0 Consensus size: 54
19669854 TTACAGTAAC
* * * * *
19669864 TTTACCTTATAGGGGTATTTTGGTCATTTAACCCTAT-AGAGGTATTACGATCAT
1 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAG-GGTATTTCGGTCAT
* * **
19669918 TTTACCCTATGGGGGTATTTCGATCATTTTACCCTATTG-GGGTATTTTTGTCAT
1 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTA-TGAGGGTATTTCGGTCAT
* * * **
19669972 TTTATCCTATGGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCACTCAT
1 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGGTCAT
* * * * **
19670026 TTTACCTTATAGGGGTATTTTGGCCATTCTACCCTATGAGGGTATTTCTATCAT
1 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGGTCAT
** ** ** * * *
19670080 TTTACATTATAAGGGTATTTCAGTCATTTTACCTTATTAGGGTATTTTGGTCAT
1 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGGTCAT
* * * *
19670134 TTTACCCTATGGGGGTATTCTAGTCATTTTACCTTATAAGGGTATTTCGGTCAT
1 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGGTCAT
* ** * *
19670188 TTTACCCTATGGTGGTATTACGGTTATTCTACCCTATGAGGGTATTTCGGTCAT
1 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGGTCAT
* * * * *
19670242 TCTACCCTATGGGGGTATTTTGGTAATTTTACCCT-TCGGGGGTATTTCGATAAT
1 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTAT-GAGGGTATTTCGGTCAT
* ** *
19670296 TTTACCCT-TCGGAGGTATTTCAGTAATTTTACCC-ATCGAGGG-ATTTCGGTCAT
1 TTTACCCTAT-GGGGGTATTTTGGTCATTTTACCCTAT-GAGGGTATTTCGGTCAT
19670349 TT
1 TT
19670351 AACAACCTTT
Statistics
Matches: 359, Mismatches: 68, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
53 15 0.04
54 342 0.95
55 2 0.01
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (54 bp):
TTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGGTCAT
Found at i:19671106 original size:4 final size:4
Alignment explanation
Indices: 19671097--19671152 Score: 53
Period size: 4 Copynumber: 14.2 Consensus size: 4
19671087 TATTGTTAGT
* * * *
19671097 TTTA TTTA TTTA TTT- GTTA TTAA CTTA TTTA TTTA TTT- GTTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA
19671144 TTTA TTTA T
1 TTTA TTTA T
19671153 GCTTTGTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
3 4 0.10
4 34 0.83
5 3 0.07
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:19671160 original size:23 final size:20
Alignment explanation
Indices: 19671089--19671152 Score: 92
Period size: 23 Copynumber: 3.0 Consensus size: 20
19671079 CATTTTATTA
19671089 TTGTTAGTTTTATTTATTTAT
1 TTGTTA-TTTTATTTATTTAT
19671110 TTGTTATTAACTTATTTATTTAT
1 TTGTTATT---TTATTTATTTAT
19671133 TTGTTATTTTATTTATTTAT
1 TTGTTATTTTATTTATTTAT
19671153 GCTTTGTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
20 14 0.35
21 6 0.15
23 20 0.50
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.70
Consensus pattern (20 bp):
TTGTTATTTTATTTATTTAT
Found at i:19672897 original size:18 final size:17
Alignment explanation
Indices: 19672870--19672903 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
19672860 ATTTGTTCTT
19672870 TTTATTTTATGTTTATG
1 TTTATTTTATGTTTATG
*
19672887 TTTATTGTTATTTTTAT
1 TTTATT-TTATGTTTAT
19672904 TAATTTCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTATTTTATGTTTATG
Found at i:19673871 original size:19 final size:19
Alignment explanation
Indices: 19673847--19673883 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
19673837 TAGATAGAAA
19673847 AAAAGAAAAAAAATATATC
1 AAAAGAAAAAAAATATATC
19673866 AAAAGAAAAAAAATATAT
1 AAAAGAAAAAAAATATAT
19673884 TGATTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (19 bp):
AAAAGAAAAAAAATATATC
Found at i:19684642 original size:23 final size:23
Alignment explanation
Indices: 19684616--19684662 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
19684606 AAAAGATGCA
19684616 AATTTTGATCACTACATAATCTG
1 AATTTTGATCACTACATAATCTG
19684639 AATTTTGATCACTACATAATCTG
1 AATTTTGATCACTACATAATCTG
19684662 A
1 A
19684663 GTGATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (23 bp):
AATTTTGATCACTACATAATCTG
Found at i:19685738 original size:25 final size:25
Alignment explanation
Indices: 19685693--19685794 Score: 145
Period size: 25 Copynumber: 4.1 Consensus size: 25
19685683 CATTAAGGAT
* *
19685693 TACCGATT-GCAACTCGTGAGAGCT
1 TACCGATTCTCAACTCGTGAGAGCA
*
19685717 TACCGATTCTCAGCTCGTGAGAGCA
1 TACCGATTCTCAACTCGTGAGAGCA
*
19685742 TACCGATTCTCAGCTCGTGAGAGCA
1 TACCGATTCTCAACTCGTGAGAGCA
19685767 TACCGATTCTCAACTCGT-ATGAGCA
1 TACCGATTCTCAACTCGTGA-GAGCA
19685792 TAC
1 TAC
19685795 ATGTACAAGA
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
24 9 0.12
25 63 0.88
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (25 bp):
TACCGATTCTCAACTCGTGAGAGCA
Found at i:19686448 original size:20 final size:20
Alignment explanation
Indices: 19686405--19686446 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
19686395 TAATGAGAGT
19686405 AAATGAAATAGAAAATAATG
1 AAATGAAATAGAAAATAATG
19686425 AAATGCAAAT-GAAAATAA-G
1 AAATG-AAATAGAAAATAATG
19686444 AAA
1 AAA
19686447 ATTTGAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.14, T:0.17
Consensus pattern (20 bp):
AAATGAAATAGAAAATAATG
Found at i:19688103 original size:30 final size:31
Alignment explanation
Indices: 19688068--19688125 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
19688058 TTACATACTC
* **
19688068 AAAATTTGAGGGATTAA-AGTGTAAATACGA
1 AAAATTTGAAGGACCAATAGTGTAAATACGA
19688098 AAAATTTGAAGGACCAATAGTGTAAATA
1 AAAATTTGAAGGACCAATAGTGTAAATA
19688126 TTTTAAGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.26
Consensus pattern (31 bp):
AAAATTTGAAGGACCAATAGTGTAAATACGA
Found at i:19708648 original size:35 final size:35
Alignment explanation
Indices: 19708609--19708691 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 35
19708599 ATGGGCATAT
19708609 CCTTGGCCGTGTGGAT-TCTGGACACA-CGGATGTGC
1 CCTTGGCCGTGTGGATCT-TGGACACATCGGAT-TGC
* * * * *
19708644 CCTTGGTCGTTTGGATCTTGGACACATGGGCTTGT
1 CCTTGGCCGTGTGGATCTTGGACACATCGGATTGC
19708679 CCTTGGCCGTGTG
1 CCTTGGCCGTGTG
19708692 AGTCCTAGAG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
35 35 0.90
36 4 0.10
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.31
Consensus pattern (35 bp):
CCTTGGCCGTGTGGATCTTGGACACATCGGATTGC
Found at i:19709675 original size:13 final size:13
Alignment explanation
Indices: 19709657--19709681 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19709647 TAGTGTTTTG
19709657 TTTTCTATTATTC
1 TTTTCTATTATTC
19709670 TTTTCTATTATT
1 TTTTCTATTATT
19709682 TTCTTGCTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTCTATTATTC
Found at i:19720320 original size:11 final size:11
Alignment explanation
Indices: 19720304--19720330 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
19720294 AGGTGTGGGA
19720304 TTTAACTTAAT
1 TTTAACTTAAT
19720315 TTTAACTTAAT
1 TTTAACTTAAT
19720326 TTTAA
1 TTTAA
19720331 TATTACCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTAACTTAAT
Found at i:19723568 original size:29 final size:29
Alignment explanation
Indices: 19723535--19723598 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
19723525 TAATCCACCA
19723535 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
19723564 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
19723594 CCCAA
1 CCCAA
19723599 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:19723572 original size:30 final size:30
Alignment explanation
Indices: 19723542--19723598 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
19723532 CCACCCAACT
19723542 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
19723571 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
19723599 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:19726260 original size:30 final size:30
Alignment explanation
Indices: 19726224--19726338 Score: 151
Period size: 30 Copynumber: 3.9 Consensus size: 30
19726214 GTGTGCTAAA
*
19726224 CGATGGTCGAAACCATCCCTTTTCCTTAAT
1 CGATGGTCGAAACCATCCCTTTTCATTAAT
* * *
19726254 CGATGGT-AAAACCATCCATCTTCATTAAT
1 CGATGGTCGAAACCATCCCTTTTCATTAAT
** *
19726283 TAATGGTCGAAATCATCCCTTTTCATTAAT
1 CGATGGTCGAAACCATCCCTTTTCATTAAT
*
19726313 TGATGGTCGAAACCATCCCTTTTCAT
1 CGATGGTCGAAACCATCCCTTTTCAT
19726339 AGATGCTCAT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
29 23 0.32
30 49 0.68
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (30 bp):
CGATGGTCGAAACCATCCCTTTTCATTAAT
Found at i:19729854 original size:32 final size:32
Alignment explanation
Indices: 19729787--19730033 Score: 162
Period size: 32 Copynumber: 7.7 Consensus size: 32
19729777 TATAGTAATG
* * * * *
19729787 TGATTGGCACAAAGCTATCAATAACAGTGATA
1 TGATCGGCACAAAGCCATCAGTAACAGTAACA
* *
19729819 TGATTGGCACACAA-CCATCAGTAACGGTAACA
1 TGATCGGCACA-AAGCCATCAGTAACAGTAACA
** ** * *
19729851 TGATCAACACAAAGCCATCAGTGGCAGTGATA
1 TGATCGGCACAAAGCCATCAGTAACAGTAACA
** *
19729883 TGATCGAAACACAA-CCATCAGTAATAGTGAA-A
1 TGATCGGCACA-AAGCCATCAGTAACAGT-AACA
* * * *
19729915 TGATCGACACACAGCCATCAGTAACGGTAATA
1 TGATCGGCACAAAGCCATCAGTAACAGTAACA
* * **
19729947 TAATCGGTACAAAGCCATCAGTAATGGT-ACTA
1 TGATCGGCACAAAGCCATCAGTAACAGTAAC-A
* *
19729979 TGATCGGCACAAAGCCATCAATAACTGT-ACTA
1 TGATCGGCACAAAGCCATCAGTAACAGTAAC-A
* *
19730011 TGATAGGCACAAAGCCAGCAGTA
1 TGATCGGCACAAAGCCATCAGTA
19730034 GCATCGCAGC
Statistics
Matches: 171, Mismatches: 37, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
31 6 0.04
32 160 0.94
33 5 0.03
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.20
Consensus pattern (32 bp):
TGATCGGCACAAAGCCATCAGTAACAGTAACA
Found at i:19730014 original size:96 final size:96
Alignment explanation
Indices: 19729787--19730033 Score: 232
Period size: 96 Copynumber: 2.6 Consensus size: 96
19729777 TATAGTAATG
* * * * *
19729787 TGATTGGCACAAAGCTATCAATAACAGTGATATGATTGGCACACAACCATCAGTAACGGTAACAT
1 TGATCGGCACAAAGCCATCAATAACTGTGATATGATAGGCACACAGCCATCAGTAACGGTAACAT
* **
19729852 GATCAACACAAAGCCATCAGTGGCAGTGATA
66 AATCAACACAAAGCCATCAGTAACAGTGATA
** * * * * *
19729883 TGATCGAAACACAA-CCATCAGTAA-TAGTGAAATGATCGACACACAGCCATCAGTAACGGTAAT
1 TGATCGGCACA-AAGCCATCAATAACT-GTGATATGATAGGCACACAGCCATCAGTAACGGTAAC
*** **
19729946 ATAATCGGTACAAAGCCATCAGTAATGGT-ACTA
64 ATAATCAACACAAAGCCATCAGTAACAGTGA-TA
* *
19729979 TGATCGGCACAAAGCCATCAATAACTGT-ACTATGATAGGCACAAAGCCAGCAGTA
1 TGATCGGCACAAAGCCATCAATAACTGTGA-TATGATAGGCACACAGCCATCAGTA
19730034 GCATCGCAGC
Statistics
Matches: 118, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
95 4 0.03
96 111 0.94
97 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.20
Consensus pattern (96 bp):
TGATCGGCACAAAGCCATCAATAACTGTGATATGATAGGCACACAGCCATCAGTAACGGTAACAT
AATCAACACAAAGCCATCAGTAACAGTGATA
Found at i:19730027 original size:64 final size:64
Alignment explanation
Indices: 19729794--19730021 Score: 221
Period size: 64 Copynumber: 3.6 Consensus size: 64
19729784 ATGTGATTGG
* * * *
19729794 CACAAAGCTATCAATAACAGTGATATGATTGGCACACAACCATCAGTAACGGTAACATGATCAA
1 CACAAAGCCATCAATAACAGTGATATGATCGGCACACAACCATCAGTAATGGTAACATGATCGA
* ** ** *
19729858 CACAAAGCCATCAGTGGCAGTGATATGATCGAAACACAACCATCAGTAATAGTGAA-ATGATCGA
1 CACAAAGCCATCAATAACAGTGATATGATCGGCACACAACCATCAGTAATGGT-AACATGATCGA
* * * * * *
19729922 CACACAGCCATCAGTAACGGTAATATAATCGGTACA-AAGCCATCAGTAATGGT-ACTATGATCG
1 CACAAAGCCATCAATAACAGTGATATGATCGGCACACAA-CCATCAGTAATGGTAAC-ATGATCG
*
19729985 G
64 A
* *
19729986 CACAAAGCCATCAATAACTGT-ACTATGATAGGCACA
1 CACAAAGCCATCAATAACAGTGA-TATGATCGGCACA
19730022 AAGCCAGCAG
Statistics
Matches: 133, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
62 1 0.01
63 3 0.02
64 127 0.95
65 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (64 bp):
CACAAAGCCATCAATAACAGTGATATGATCGGCACACAACCATCAGTAATGGTAACATGATCGA
Found at i:19730266 original size:23 final size:23
Alignment explanation
Indices: 19730195--19730281 Score: 84
Period size: 24 Copynumber: 3.7 Consensus size: 23
19730185 CCATGCTCAG
* *
19730195 AATCAGTCATTCAAATCACAGACA
1 AATCAGTCATT-TAACCACAGACA
** *
19730219 AATCAGTCATACCAACTACAGACA
1 AATCAGTCAT-TTAACCACAGACA
*
19730243 AATTAGTCATTTAACCACAGACA
1 AATCAGTCATTTAACCACAGACA
* *
19730266 AAACAATCATTTAACC
1 AATCAGTCATTTAACC
19730282 TCGAGAGGCA
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
23 23 0.45
24 28 0.55
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.22
Consensus pattern (23 bp):
AATCAGTCATTTAACCACAGACA
Found at i:19730352 original size:27 final size:27
Alignment explanation
Indices: 19730317--19730767 Score: 510
Period size: 27 Copynumber: 16.7 Consensus size: 27
19730307 CCACCAGGGC
* *
19730317 ATTACGGTCATTGTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
19730344 ATTACGGTCATTTTAACCTACAGGGGG
1 ATTACGGTCATTTTACCCTACAGGGGT
*
19730371 ATTACGGTCATTTTACCCTACAAGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
19730398 ATTACGGTCATTTTACCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
19730425 ATTACGATCATTTTACCCTACACGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
19730452 CTTACAGTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
19730479 ATTACAGTCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
19730506 ATTACGATCATTTTACCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* * * * **
19730533 ACTACGATCATTTTACTCGACAGGGAC
1 ATTACGGTCATTTTACCCTACAGGGGT
19730560 ATTACGGTCA-TTTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
19730586 ATTACGATCATTTTACCTTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
*
19730613 ATTACGGTCATTTTAGCCTACAGGGGGT
1 ATTACGGTCATTTTACCCTACA-GGGGT
*
19730641 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
19730668 ATTACGATCATTTTACCTTACAAGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
**
19730695 ATTACGGTCATTTTACCCTATGGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
** * **
19730722 ATTTTGGT-ATTCTACCCTATGGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
** *
19730748 ATTTTGGTCGTTTTACCCTA
1 ATTACGGTCATTTTACCCTA
19730768 TGGGGCCATT
Statistics
Matches: 362, Mismatches: 59, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
26 46 0.13
27 291 0.80
28 25 0.07
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAGGGGT
Found at i:19730740 original size:26 final size:27
Alignment explanation
Indices: 19730691--19730772 Score: 112
Period size: 26 Copynumber: 3.1 Consensus size: 27
19730681 TACCTTACAA
** *
19730691 GGGTATTACGGTCATTTTACCCTATGG
1 GGGTATTTTGGTCATTCTACCCTATGG
19730718 GGGTATTTTGGT-ATTCTACCCTATGG
1 GGGTATTTTGGTCATTCTACCCTATGG
* *
19730744 GGGTATTTTGGTCGTTTTACCCTATGG
1 GGGTATTTTGGTCATTCTACCCTATGG
19730771 GG
1 GG
19730773 CCATTTCAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
26 25 0.51
27 24 0.49
ACGTcount: A:0.15, C:0.16, G:0.29, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTCATTCTACCCTATGG
Found at i:19730768 original size:27 final size:27
Alignment explanation
Indices: 19730322--19730901 Score: 191
Period size: 27 Copynumber: 21.5 Consensus size: 27
19730312 AGGGCATTAC
* * **
19730322 GGTCATTGTACCCTATAGGGGTATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* * **
19730349 GGTCATTTTAACCTACAGGGGG-ATTAC
1 GGTCATTTTACCCTA-TGGGGGTATTTT
*** **
19730376 GGTCATTTTACCCTACAAGGGTATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* * **
19730403 GGTCATTTTACCCTATAGGGGCATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* *** * **
19730430 GATCATTTTACCCTACACGGGTCTTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* ** * **
19730457 AGTCATTTTACCCTACAGGGGCATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* * **
19730484 AGTCATTTTACCCTATAGGGGTATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* * * * **
19730511 GATCATTTTACCCTATAGGGGCACTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* * * ** ** **
19730538 GATCATTTTACTCGACAGGGACATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
** **
19730565 GGTCA-TTTACCCTACAGGGGTATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* * ** * **
19730591 GATCATTTTACCTTACAGGGGCATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* * **
19730618 GGTCATTTTAGCCTACAGGGGGTATTAC
1 GGTCATTTTACCCTA-TGGGGGTATTTT
** * **
19730646 GGTCATTTTACCCTACAGGGGCATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
* * *** **
19730673 GATCATTTTACCTTACAAGGGTATTAC
1 GGTCATTTTACCCTATGGGGGTATTTT
19730700 GGTCATTTTACCCTATGGGGGTATTTT
1 GGTCATTTTACCCTATGGGGGTATTTT
*
19730727 GGT-ATTCTACCCTATGGGGGTATTTT
1 GGTCATTTTACCCTATGGGGGTATTTT
* ** *
19730753 GGTCGTTTTACCCTATGGGGCCATTTC
1 GGTCATTTTACCCTATGGGGGTATTTT
** *** * *
19730780 AATCATTTTACCC-ATCAAAGTTATTTG
1 GGTCATTTTACCCTAT-GGGGGTATTTT
***
19730807 GGTCATTTTACCC-AT-CAAGTATATTT
1 GGTCATTTTACCCTATGGGGGTAT-TTT
* * * *
19730833 CGATCATTTTACCCTTTGAGGGTATTTC
1 -GGTCATTTTACCCTATGGGGGTATTTT
* * *
19730861 GGTCATTTTATCCTTTGAGGGTATTTT
1 GGTCATTTTACCCTATGGGGGTATTTT
19730888 GGTCATTTTACCCT
1 GGTCATTTTACCCT
19730902 TCGAGGGTAT
Statistics
Matches: 451, Mismatches: 92, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
25 4 0.01
26 53 0.12
27 360 0.80
28 30 0.07
29 4 0.01
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTCATTTTACCCTATGGGGGTATTTT
Found at i:19735267 original size:50 final size:50
Alignment explanation
Indices: 19735192--19735426 Score: 190
Period size: 50 Copynumber: 4.7 Consensus size: 50
19735182 GTAAAGAGAT
*
19735192 CCCATGTAAGACCATGCCTGGGACATGGCGTTGGCACCAAGATGAGAGGC
1 CCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGC
* * * *
19735242 CCCATGTAAGACGATGTTTGGGACATGGCGTTGGCACTAAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGC
* * * * * * *
19735292 CTC-TCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGA-AC
1 CCCAT-GTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGC
* * * * * ** * * ***
19735341 TCCCATGTAAGACCATATCTAGGATATGACATTGGCA-GTACATGAAACAT
1 -CCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGC
*
19735391 CCCATGTAAGACC-TGTCTGGGACCATGGCTTTGGCA
1 CCCATGTAAGACCATGTCTGGGA-CATGGCGTTGGCA
19735427 TGTTATTATC
Statistics
Matches: 149, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
48 7 0.05
49 30 0.20
50 111 0.74
51 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (50 bp):
CCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGC
Found at i:19735376 original size:100 final size:100
Alignment explanation
Indices: 19735197--19735377 Score: 220
Period size: 100 Copynumber: 1.8 Consensus size: 100
19735187 GAGATCCCAT
* * * * * * * *
19735197 GTAAGACCATGCCTGGGACATGGCGTTGGCACCAAGATGAGAGGCCCCATGTAAGACGATGTTTG
1 GTAAGACCATGCCTAGGACATGGCATGGGCACCAAGATGAGAGACCCCATGTAAGACCATATCTA
* *
19735262 GGACATGGCGTTGGCACTAAGATGAGAGGTCTCTC
66 GGACATGACATTGGCACTAAGATGAGAGGTCTCTC
* * *
19735297 GTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGA-ACTCCCATGTAAGACCATATCT
1 GTAAGACCATGCCTAGGACATGGCATGGGCACCAAGATGAGAGAC-CCCATGTAAGACCATATCT
*
19735361 AGGATATGACATTGGCA
65 AGGACATGACATTGGCA
19735378 GTACATGAAA
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
99 1 0.02
100 65 0.98
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (100 bp):
GTAAGACCATGCCTAGGACATGGCATGGGCACCAAGATGAGAGACCCCATGTAAGACCATATCTA
GGACATGACATTGGCACTAAGATGAGAGGTCTCTC
Found at i:19736987 original size:24 final size:25
Alignment explanation
Indices: 19736951--19736998 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
19736941 CCAAATCCCA
*
19736951 AAATATTCTCTCCTCCAA-TCTCTCC
1 AAATATTCCCTCCT-CAATTCTCTCC
19736976 AAATA-TCCCTCCTCAATTCTCTC
1 AAATATTCCCTCCTCAATTCTCTC
19736999 TATGACTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.25, C:0.40, G:0.00, T:0.35
Consensus pattern (25 bp):
AAATATTCCCTCCTCAATTCTCTCC
Found at i:19748765 original size:100 final size:100
Alignment explanation
Indices: 19748592--19748816 Score: 423
Period size: 100 Copynumber: 2.2 Consensus size: 100
19748582 ACCACTAAAT
*
19748592 TGGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCCATTCAAACTAGGTTGCCTCAATATCT
1 TGGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCAATTCAAACTAGGTTGCCTCAATATCT
19748657 GGCTTTCTAATTCCTAGGTTTAACTCACTGAAAAG
66 GGCTTTCTAATTCCTAGGTTTAACTCACTGAAAAG
*
19748692 TGGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCAATTCAAACTAGGTTGCCTCATTATCT
1 TGGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCAATTCAAACTAGGTTGCCTCAATATCT
*
19748757 GGCTTTCTAATTCCTGGGTTTAACTCACTGAAAAG
66 GGCTTTCTAATTCCTAGGTTTAACTCACTGAAAAG
19748792 TGGCACAGCATATTGTCTGATGCAT
1 TGGCACAGCATATTGTCTGATGCAT
19748817 CGATCCCTAT
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 122 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (100 bp):
TGGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCAATTCAAACTAGGTTGCCTCAATATCT
GGCTTTCTAATTCCTAGGTTTAACTCACTGAAAAG
Found at i:19753213 original size:33 final size:33
Alignment explanation
Indices: 19753176--19753249 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
19753166 AAGAGATAAT
*
19753176 GATGCTTGAGGGATGATTAAAGAATGATTGTGG
1 GATGCTTGAGGGACGATTAAAGAATGATTGTGG
*
19753209 GATGCTTAAGGGACGATTAAAGAATGATTGTGG
1 GATGCTTGAGGGACGATTAAAGAATGATTGTGG
19753242 GATGCTTG
1 GATGCTTG
19753250 TGGAATGAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.30, C:0.05, G:0.35, T:0.30
Consensus pattern (33 bp):
GATGCTTGAGGGACGATTAAAGAATGATTGTGG
Found at i:19761416 original size:419 final size:419
Alignment explanation
Indices: 19760630--19761440 Score: 1026
Period size: 419 Copynumber: 1.9 Consensus size: 419
19760620 GAAAGAGGGT
* * *
19760630 CGAAAAAACCCTAGAACTTGTGCACACTAACGTTTGTGGCCCCATAAGCGTTAGTGAAAAAGGTG
1 CGAAAAAACCCTACAACTTGTGCACACTAACGTATGTGGCCCCATAAGCGCTAGTGAAAAAGGTG
* * *
19760695 GTTATGAGTATTATGTAACCTTTATTGATGAATATTCTAGATATGGGTATGTATACCAGATTCAC
66 GTTACGAGTATTATGTAACCTTTATTGATGAATATTCTAGATATGGCTATGTATACCAGATGCAC
* * **
19760760 CTCAAGAGTGAAAGATTTGATAAATTCAAAGAGTTTCGTGTAGCAGTGGAGAAACAACTAGGTTT
131 CTCAAAAGTGAAAGATTTGATAAATTCAAAGAGTTTCGTGCAAAAGTGGAGAAACAACTAGGTTT
* * * * *
19760825 ACCCATAAAGGCACTTTGCTTTGATTGAGGTTGGGAATATTTATCTTGTAAGTTCTTAAGGTATC
196 ACCCAGAAAAGAACTTCGCTTTGATCGAGGTTGGGAATATTTATCTTGTAAGTTCTTAAGGTATC
* * * *
19760890 TAATAGAGAATAGGATTCTATCCCAGCTAATCACGCCAGCCACTCCATAATAGAATGGCGTGGGA
261 TAATAAAGAATAAGATTATATCCCAGCTAATCACGCCAGCCACTCCATAACAGAATGGCGTGGGA
* * *
19760955 AAGACAAGAAATCAAACGTTGTTAGACATGGTACGCTCGATGTTAAGTTATTCGAAGCT-CTCAA
326 AAGACAACAAATCAAACATTGTTAGACATAGTACGCTCGATGTTAAGTTATTCGAAGCTGC-CAA
19761019 TCTTCCACAATATGAAAAAGGAACAGGGGC
390 TCTTCCACAATATGAAAAAGGAACAGGGGC
* * ** * * ** *
19761049 CGAAAAACCCCTACAACTTGTGCACATTGGCGTATGTGGCCCCATGAGTGCTAGTTCAAGAGGTG
1 CGAAAAAACCCTACAACTTGTGCACACTAACGTATGTGGCCCCATAAGCGCTAGTGAAAAAGGTG
* * *
19761114 GTTACGAGTATTATGTAACCTTTATTGATGACTATTCCT-GATATAGGCT-TGTATACCTGGTGC
66 GTTACGAGTATTATGTAACCTTTATTGATGAATATT-CTAGATAT-GGCTATGTATACCAGATGC
**
19761177 A-CTGCAAAAGTGAAATCTTTGATAAATTCAAAGAGTTTCGTGCAAAAGTGGAGAAACAACTAGG
129 ACCT-CAAAAGTGAAAGATTTGATAAATTCAAAGAGTTTCGTGCAAAAGTGGAGAAACAACTAGG
* * *
19761241 TTTACCCAGAAAAGAACTTCGGTCTT-ATCGAGG-TGGAGAATATTTATC-TGATGAGTTCTTAG
193 TTTACCCAGAAAAGAACTTCGCT-TTGATCGAGGTTGG-GAATATTTATCTTG-TAAGTTCTTAA
* * * * * * *
19761303 GGTA-CTTCATAAAGAATAAGATTATATCCTAGTTAATCACGTCGGGCACTCCATAACATAATGG
255 GGTATC-TAATAAAGAATAAGATTATATCCCAGCTAATCACGCCAGCCACTCCATAACAGAATGG
* * * * * *
19761367 TGTGGTAGAGAGAACAAATCAAACATTGTTAGACATAGTACGTTCGATGTTAAGTTATTTGAAGC
319 CGTGGGAAAGACAACAAATCAAACATTGTTAGACATAGTACGCTCGATGTTAAGTTATTCGAAGC
19761432 TGCCAATCT
384 TGCCAATCT
19761441 CTTTTTGGAA
Statistics
Matches: 332, Mismatches: 52, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
418 8 0.02
419 316 0.95
420 8 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (419 bp):
CGAAAAAACCCTACAACTTGTGCACACTAACGTATGTGGCCCCATAAGCGCTAGTGAAAAAGGTG
GTTACGAGTATTATGTAACCTTTATTGATGAATATTCTAGATATGGCTATGTATACCAGATGCAC
CTCAAAAGTGAAAGATTTGATAAATTCAAAGAGTTTCGTGCAAAAGTGGAGAAACAACTAGGTTT
ACCCAGAAAAGAACTTCGCTTTGATCGAGGTTGGGAATATTTATCTTGTAAGTTCTTAAGGTATC
TAATAAAGAATAAGATTATATCCCAGCTAATCACGCCAGCCACTCCATAACAGAATGGCGTGGGA
AAGACAACAAATCAAACATTGTTAGACATAGTACGCTCGATGTTAAGTTATTCGAAGCTGCCAAT
CTTCCACAATATGAAAAAGGAACAGGGGC
Found at i:19779520 original size:26 final size:26
Alignment explanation
Indices: 19779491--19779540 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19779481 AAATTTTCTC
*
19779491 AAAATTTTACTGGGGGTAAAATCGTT
1 AAAATTTTACCGGGGGTAAAATCGTT
19779517 AAAATTTTACCGGGGGTAAAATCG
1 AAAATTTTACCGGGGGTAAAATCG
19779541 AGATGAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (26 bp):
AAAATTTTACCGGGGGTAAAATCGTT
Found at i:19780509 original size:3 final size:3
Alignment explanation
Indices: 19780501--19780536 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
19780491 AAAGAAAAGG
19780501 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
19780537 TAGCTTAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:19799642 original size:29 final size:29
Alignment explanation
Indices: 19799609--19799672 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
19799599 TAGAGTAAAT
* *
19799609 GGTAGACGAGAAAGGTGAAAACTTGACGG
1 GGTAGACAAAAAAGGTGAAAACTTGACGG
*
19799638 GGTAGACAAAAAAGGTGAAAGCTTGACGG
1 GGTAGACAAAAAAGGTGAAAACTTGACGG
*
19799667 AGTAGA
1 GGTAGA
19799673 AAGAAACATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.41, C:0.09, G:0.36, T:0.14
Consensus pattern (29 bp):
GGTAGACAAAAAAGGTGAAAACTTGACGG
Found at i:19807847 original size:19 final size:20
Alignment explanation
Indices: 19807797--19807844 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
19807787 ATGAAGTAGG
19807797 TGAAAAAAACATGGCTTTGA
1 TGAAAAAAACATGGCTTTGA
19807817 TGAAAAAAACATGGCTTTGA
1 TGAAAAAAACATGGCTTTGA
19807837 TGGAAAAA
1 T-GAAAAA
19807845 CATTCCGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.48, C:0.08, G:0.21, T:0.23
Consensus pattern (20 bp):
TGAAAAAAACATGGCTTTGA
Found at i:19809235 original size:50 final size:50
Alignment explanation
Indices: 19809140--19809279 Score: 154
Period size: 50 Copynumber: 2.8 Consensus size: 50
19809130 AATTGAGATT
* * * * *
19809140 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATCGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATAGGCACCGAG
** * * * *
19809190 ATGAGAGGTCCCCCGTAAGACCATGTCTAGGATGTGGCATAGGCACTGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATAGGCACCGAG
** *
19809240 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCAT
19809280 TTGCAGTACA
Statistics
Matches: 72, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 72 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATAGGCACCGAG
Found at i:19809542 original size:4 final size:4
Alignment explanation
Indices: 19809533--19809575 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
19809523 ATGAGTTATT
* * * *
19809533 TAAG TAAG TAAG TAAG TAAG TAAA CAAG TAAT TGAG TAAG TAA
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAA
19809576 AGAAGCGAGT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.02, G:0.21, T:0.26
Consensus pattern (4 bp):
TAAG
Found at i:19815954 original size:50 final size:50
Alignment explanation
Indices: 19815899--19816038 Score: 122
Period size: 50 Copynumber: 2.8 Consensus size: 50
19815889 CATAGAGATT
* * *
19815899 ATGAGAGTTCCTATGTAAGACCATG-GCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGCTCCTATGTAAGACCATGTG-TGGGACATGGCATGGGCACCGAG
* *** * * *
19815949 ATGAGAGGTCCCCCGTAAGAACATGTGTGGGACATGGCATGGGCACTGAT
1 ATGAGAGCTCCTATGTAAGACCATGTGTGGGACATGGCATGGGCACCGAG
* * * *
19815999 ATGAGAACT-CTCATGTAAGACCATATTTGGGATATGGCAT
1 ATGAGAGCTCCT-ATGTAAGACCATGTGTGGGACATGGCAT
19816039 TGGTAGTACA
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
49 1 0.01
50 68 0.97
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (50 bp):
ATGAGAGCTCCTATGTAAGACCATGTGTGGGACATGGCATGGGCACCGAG
Found at i:19816309 original size:12 final size:12
Alignment explanation
Indices: 19816292--19816319 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
19816282 ATGAGTTATT
19816292 TAAGTAAACAAG
1 TAAGTAAACAAG
19816304 TAAGTAAACAAG
1 TAAGTAAACAAG
19816316 TAAG
1 TAAG
19816320 GGAGTAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.18, T:0.18
Consensus pattern (12 bp):
TAAGTAAACAAG
Found at i:19831043 original size:27 final size:27
Alignment explanation
Indices: 19831024--19831076 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
19831014 TTGGTGAAAT
*
19831024 ATGTTTGCAGATGTGTTTTGGCGAACA
1 ATGTTTGCAGATGTATTTTGGCGAACA
19831051 ATGTTTGCAGATGTATTTTGGCGAAC
1 ATGTTTGCAGATGTATTTTGGCGAAC
19831077 TAAATTCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.11, G:0.28, T:0.38
Consensus pattern (27 bp):
ATGTTTGCAGATGTATTTTGGCGAACA
Found at i:19866210 original size:13 final size:14
Alignment explanation
Indices: 19866185--19866213 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
19866175 GAAAAGATGG
19866185 TAATTATTAATATA
1 TAATTATTAATATA
19866199 TAATTA-TAATATA
1 TAATTATTAATATA
19866212 TA
1 TA
19866214 TTAATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATTATTAATATA
Found at i:19871428 original size:33 final size:35
Alignment explanation
Indices: 19871391--19871458 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
19871381 AAATTTTTGA
* *
19871391 CACTG-TACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGATACTGAAATGGCCTAAGGCCCAAGACTGT
* *
19871424 CACTGATACTGAAATGGCCTTAGGCCTAAGACTGT
1 CACTGATACTGAAATGGCCTAAGGCCCAAGACTGT
19871459 TCAACTGTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.17
34 19 0.66
35 5 0.17
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (35 bp):
CACTGATACTGAAATGGCCTAAGGCCCAAGACTGT
Found at i:19872187 original size:25 final size:26
Alignment explanation
Indices: 19872158--19872215 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
19872148 CTGTAAGTGT
*
19872158 TCTGAAACTGATACATGCTATGATA-
1 TCTGAAACTGATACATGCTACGATAG
* *
19872183 TCTGAAACTGATATATGTTACGATAG
1 TCTGAAACTGATACATGCTACGATAG
19872209 TCTGAAA
1 TCTGAAA
19872216 GTACTGTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 22 0.76
26 7 0.24
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (26 bp):
TCTGAAACTGATACATGCTACGATAG
Found at i:19889916 original size:24 final size:24
Alignment explanation
Indices: 19889868--19889914 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
19889858 ACTGGTCATA
* *
19889868 GAGAGATTTGAGGAGGGATATTTG
1 GAGAGATTTGAAGAGGAATATTTG
19889892 GAGAGATTTGAAGAGAGAATATT
1 GAGAGATTTGAAGAG-GAATATT
19889915 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.28
Consensus pattern (24 bp):
GAGAGATTTGAAGAGGAATATTTG
Found at i:19890606 original size:27 final size:27
Alignment explanation
Indices: 19890544--19890883 Score: 385
Period size: 27 Copynumber: 12.6 Consensus size: 27
19890534 CCTCCAAAGG
* *
19890544 CCATAGGGTAGAATGATCGAAA-ACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* * *
19890570 CTATAAGGTAAAATAACCGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* * * *
19890597 CCACAGGGTAAAATGAGCAAAATAACC
1 CCATAGGGTAAAATGACCGAAATACCC
* *
19890624 CCATAGGGTAAAATTAGCGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC
*
19890651 CCATAGGGTAAAATGAACGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* * * *
19890678 CTAGAGGGTAAAATAAGCGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* * *
19890705 CCTTAGTGTAAAATGAGCGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* * *
19890732 CCATAAGGTAAACTGACCGAATTACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* *
19890759 CCACAGGGTAAAATGATCGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* * *
19890786 CCACAAGGTAAAATGACCGAACTACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* *
19890813 CCATAGGGTAGAATGATCGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC
*
19890840 CCATAAGGTAAAATGACCGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC
* *
19890867 CCAAAAGGTAAAATGAC
1 CCATAGGGTAAAATGAC
19890884 TATTATACCC
Statistics
Matches: 263, Mismatches: 50, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
26 17 0.06
27 246 0.94
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (27 bp):
CCATAGGGTAAAATGACCGAAATACCC
Found at i:19893490 original size:27 final size:27
Alignment explanation
Indices: 19893452--19893710 Score: 333
Period size: 27 Copynumber: 9.6 Consensus size: 27
19893442 TAAGCCGAGT
* *
19893452 AATGACCAAAATACCCCCATAGGGTTA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
19893479 AATGACCGAAATACCCTCATAAGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
19893506 AATAACCGAAATACCCCTACAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
19893533 AATGACCGAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
19893560 AATGACTGAAATACTCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
*
19893587 AATG-CTCAAAATACCCCCATAGGGTAA
1 AATGAC-CGAAATACCCCCATAGGGTAA
* *
19893614 AATGACCAAAATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
19893641 AATGACTGGAATAACCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
19893668 AATGACCGAAATA-CCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
**
19893694 AATGACCGTTATACCCC
1 AATGACCGAAATACCCC
19893711 TAAGAGATTA
Statistics
Matches: 200, Mismatches: 29, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 25 0.12
27 174 0.87
28 1 0.00
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.18
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGGTAA
Found at i:19894154 original size:29 final size:29
Alignment explanation
Indices: 19894093--19894184 Score: 127
Period size: 28 Copynumber: 3.3 Consensus size: 29
19894083 TGTATTAGGT
* *
19894093 TAAGGCTCACACTGATAC-TGTATTGGGC
1 TAAGGCCCACACTGATACTTGAATTGGGC
*
19894121 TAAGGCCCACACTAATACTTGAATTGGGC
1 TAAGGCCCACACTGATACTTGAATTGGGC
*
19894150 TAAGGCCCACACTGCTA-TTGAATTGGG-
1 TAAGGCCCACACTGATACTTGAATTGGGC
19894177 TAAGGCCC
1 TAAGGCCC
19894185 TCATTGTACT
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
27 8 0.14
28 26 0.45
29 24 0.41
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (29 bp):
TAAGGCCCACACTGATACTTGAATTGGGC
Found at i:19895683 original size:27 final size:27
Alignment explanation
Indices: 19895653--19895869 Score: 244
Period size: 27 Copynumber: 8.1 Consensus size: 27
19895643 TTACGCTGTT
* * *
19895653 ATGACCAAAATACCTCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
19895680 ATGACTGAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
19895707 ATGACTGAAATACCCCCATAAGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
*
19895734 ATAACCGAAATA--CCC-TAGGGGTAAA
1 ATGACCGAAATACCCCCATA-GGGTAAA
*
19895759 ATGACCGAAGTA-CCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
19895785 ATAACCAAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
19895812 ATGACCGAAATACCCCAATTGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
19895839 ATGACTGAAACACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
19895866 ATGA
1 ATGA
19895870 TTGTTATACC
Statistics
Matches: 161, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
24 2 0.01
25 19 0.12
26 19 0.12
27 121 0.75
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAGGGTAAA
Found at i:19896124 original size:27 final size:26
Alignment explanation
Indices: 19896093--19896144 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19896083 CTGCTGGTGG
*
19896093 CTTTGCCACATATACTGTTACTGGTAA
1 CTTTGCCACA-ATACTATTACTGGTAA
* *
19896120 CTTTGCTACAATTCTATTACTGGTA
1 CTTTGCCACAATACTATTACTGGTA
19896145 GTTTTACTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (26 bp):
CTTTGCCACAATACTATTACTGGTAA
Found at i:19896314 original size:28 final size:28
Alignment explanation
Indices: 19896267--19896371 Score: 129
Period size: 28 Copynumber: 3.8 Consensus size: 28
19896257 ATTGTAATGT
* * *
19896267 TACTGTATTGGGCAAAGGCCCACACTAA
1 TACTGAATTGGGCTAAGGCCCACACTGA
* * * *
19896295 TACTGTATTGGTCTAGGGCCCATACTGA
1 TACTGAATTGGGCTAAGGCCCACACTGA
* *
19896323 TTCTGAATTGGGCTAAGGCCCACACTGT
1 TACTGAATTGGGCTAAGGCCCACACTGA
19896351 TACTGAATTGGGCTAAGGCCC
1 TACTGAATTGGGCTAAGGCCC
19896372 TCATTATACT
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (28 bp):
TACTGAATTGGGCTAAGGCCCACACTGA
Found at i:19897750 original size:27 final size:27
Alignment explanation
Indices: 19897712--19897931 Score: 163
Period size: 27 Copynumber: 8.2 Consensus size: 27
19897702 TTACACTGTT
*
19897712 ATGACA-AAATACCTCCATGGGGTAAA
1 ATGACAGAAATACCTCCATAGGGTAAA
*** *
19897738 ATGACAGAAATACACT-CATACAATAGA
1 ATGACAGAAATAC-CTCCATAGGGTAAA
* *
19897765 ATGACTA-AAATACTTCTATAGGGTAAA
1 ATGAC-AGAAATACCTCCATAGGGTAAA
19897792 ATGATC-GAAATACCCTCACA-A-GGTAAA
1 ATGA-CAGAAATA-CCTC-CATAGGGTAAA
*
19897819 ATGACTGAAATACC-CCTATAGGGTAAA
1 ATGACAGAAATACCTCC-ATAGGGTAAA
* *
19897846 ATGACCA-AAATACCCCCATAGGGTAGA
1 ATGA-CAGAAATACCTCCATAGGGTAAA
* * *
19897873 ATGACCGAAATATCC-CAATTGGGTAAA
1 ATGACAGAAATA-CCTCCATAGGGTAAA
*
19897900 ATGACTGAAATACC-CCTATAGGGTAAA
1 ATGACAGAAATACCTCC-ATAGGGTAAA
19897927 ATGAC
1 ATGAC
19897932 TGTTATACCC
Statistics
Matches: 155, Mismatches: 22, Indels: 33
0.74 0.10 0.16
Matches are distributed among these distances:
24 1 0.01
25 2 0.01
26 15 0.10
27 123 0.79
28 13 0.08
29 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (27 bp):
ATGACAGAAATACCTCCATAGGGTAAA
Found at i:19897856 original size:81 final size:80
Alignment explanation
Indices: 19897764--19897931 Score: 230
Period size: 81 Copynumber: 2.1 Consensus size: 80
19897754 CATACAATAG
* ** * *
19897764 AATGACTAAAATACTTCTATAGGGTAAAATGATCGAAATACCCTCACA-AGGTAAAATGACTGAA
1 AATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCC-CA-ATAGGTAAAATGACTGAA
19897828 ATACCCCTATAGGGTAA
64 ATACCCCTATAGGGTAA
* * *
19897845 AATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATATCCCAATTGGGTAAAATGACTGAAA
1 AATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCCAA-TAGGTAAAATGACTGAAA
19897910 TACCCCTATAGGGTAA
65 TACCCCTATAGGGTAA
19897926 AATGAC
1 AATGAC
19897932 TGTTATACCC
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 1 0.01
80 2 0.03
81 74 0.96
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.21
Consensus pattern (80 bp):
AATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCCAATAGGTAAAATGACTGAAAT
ACCCCTATAGGGTAA
Found at i:19897932 original size:27 final size:27
Alignment explanation
Indices: 19897764--19897943 Score: 193
Period size: 27 Copynumber: 6.7 Consensus size: 27
19897754 CATACAATAG
* **
19897764 AATGACTAAAATACTTCTATAGGGTAA
1 AATGACTGAAATACCCCTATAGGGTAA
* *
19897791 AATGA-TCGAAATA-CCCTCACAAGGTAA
1 AATGACT-GAAATACCCCT-ATAGGGTAA
19897818 AATGACTGAAATACCCCTATAGGGTAA
1 AATGACTGAAATACCCCTATAGGGTAA
** * *
19897845 AATGACCAAAATACCCCCATAGGGTAG
1 AATGACTGAAATACCCCTATAGGGTAA
* * * *
19897872 AATGACCGAAATATCCCAATTGGGTAA
1 AATGACTGAAATACCCCTATAGGGTAA
19897899 AATGACTGAAATACCCCTATAGGGTAA
1 AATGACTGAAATACCCCTATAGGGTAA
**
19897926 AATGACTGTTATACCCCT
1 AATGACTGAAATACCCCT
19897944 GGGATATGAA
Statistics
Matches: 127, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.02
27 119 0.94
28 5 0.04
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
AATGACTGAAATACCCCTATAGGGTAA
Found at i:19898372 original size:28 final size:28
Alignment explanation
Indices: 19898332--19898427 Score: 149
Period size: 28 Copynumber: 3.4 Consensus size: 28
19898322 ATGTTATTGT
*
19898332 ATTGGGCTTAGGCCCACACTGATACT-A
1 ATTGGGCTAAGGCCCACACTGATACTGA
19898359 TATTGGGCTAAGGCCCACACTGATACTGA
1 -ATTGGGCTAAGGCCCACACTGATACTGA
* *
19898388 ATTGGGCTAAAGCACACACTGATACTGA
1 ATTGGGCTAAGGCCCACACTGATACTGA
19898416 ATTGGGCTAAGG
1 ATTGGGCTAAGG
19898428 GCCTCATTGT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
28 62 0.98
29 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (28 bp):
ATTGGGCTAAGGCCCACACTGATACTGA
Found at i:19899510 original size:27 final size:27
Alignment explanation
Indices: 19899115--19899499 Score: 414
Period size: 27 Copynumber: 14.2 Consensus size: 27
19899105 TTTACACTGT
* ***
19899115 AATGACCAAAATACCTATATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
19899142 AATGACTGAAATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
19899169 AATGACAGAAATACCTCCATAGGATAA
1 AATGACCGAAATACCCCCATAGGGTAA
19899196 AATGACCGAAATA-CCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
19899222 AATGACTGAAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
** *
19899249 AATGACC-AAATTACCCTTATATGGTAA
1 AATGACCGAAA-TACCCCCATAGGGTAA
***
19899276 AATGAAAAAAAAATACCCCCATAGGGTAA
1 AATG--ACCGAAATACCCCCATAGGGTAA
* * **
19899305 AATGAGCAAAATACCCGTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
19899332 AATAAGCGAAATATCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* **
19899359 AATGATCGAAATACCCCCATAAAGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
19899386 AATTACCGAAATACCTCCATAGGATAA
1 AATGACCGAAATACCCCCATAGGGTAA
*
19899413 AATGACCGAAATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
* * * *
19899440 AATGACCGAAGTGCCCCTATGGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
19899467 AATGACCGAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
19899494 AATGAC
1 AATGAC
19899500 TGTTATACCC
Statistics
Matches: 297, Mismatches: 56, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
26 26 0.09
27 250 0.84
29 18 0.06
30 3 0.01
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGGTAA
Found at i:19899915 original size:28 final size:28
Alignment explanation
Indices: 19899883--19899951 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
19899873 GTTACTGTAC
19899883 TGGGCTAAGGCCCACACTGATACT-ATAT
1 TGGGCTAAGGCCCACACTGATACTGA-AT
* **
19899911 TGGGCTAAGGCCCACAGTTTTACTGAAT
1 TGGGCTAAGGCCCACACTGATACTGAAT
19899939 TGGGCTAAGGCCC
1 TGGGCTAAGGCCC
19899952 TAATTGTACT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (28 bp):
TGGGCTAAGGCCCACACTGATACTGAAT
Found at i:19900643 original size:27 final size:26
Alignment explanation
Indices: 19900603--19900977 Score: 383
Period size: 27 Copynumber: 14.0 Consensus size: 26
19900593 GTTATGACCA
* * *
19900603 AAATACCTCTATAGGGTAAAATGGCTG
1 AAATACCCCCATAGGGTAAAATGAC-G
*
19900630 AAATACCCCCATAGGGTAGAATGACTG
1 AAATACCCCCATAGGGTAAAATGAC-G
* *
19900657 AAATA-CCCCATAAGATAAAATGAACG
1 AAATACCCCCATAGGGTAAAATG-ACG
19900683 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGAC-G
* *
19900710 AAATACCCCTATAGGGTAAAATGACC
1 AAATACCCCCATAGGGTAAAATGACG
** * **
19900736 AAATTACCCTTATATGGTAAAATGAAAA
1 AAA-TACCCCCATAGGGTAAAATG-ACG
*
19900764 AAATACCCCCATAGGGTAAAATGAGCA
1 AAATACCCCCATAGGGTAAAATGA-CG
** *
19900791 AAATACCCGTATAGGGTAAAATAAGCG
1 AAATACCCCCATAGGGTAAAATGA-CG
*
19900818 AAATATCCCCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGA-CG
** *
19900845 AAATACCCCCATAAAGTAAAATTACCG
1 AAATACCCCCATAGGGTAAAATGA-CG
* *
19900872 AAATACCTCCATAGGATAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGA-CG
*
19900899 AAATACCCCCATAGGGTAGAATGACCG
1 AAATACCCCCATAGGGTAAAATGA-CG
* * *
19900926 AAGTACCCCTATGGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGA-CG
19900953 AAATACCCCCATAGGGTAAAATGAC
1 AAATACCCCCATAGGGTAAAATGAC
19900978 TGTTATACCC
Statistics
Matches: 294, Mismatches: 48, Indels: 13
0.83 0.14 0.04
Matches are distributed among these distances:
26 27 0.09
27 263 0.89
28 4 0.01
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.19
Consensus pattern (26 bp):
AAATACCCCCATAGGGTAAAATGACG
Found at i:19900989 original size:54 final size:54
Alignment explanation
Indices: 19900603--19900990 Score: 426
Period size: 54 Copynumber: 7.2 Consensus size: 54
19900593 GTTATGACCA
* * * *
19900603 AAATACCTCTATAGGGTAAAATGGCTGAAATACCCCCATAGGGTAGAATGACTG
1 AAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * *
19900657 AAATACCCC-ATAAGATAAAATGAACGAAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
** * ***
19900710 AAATACCCCTATAGGGTAAAATGACC-AAATTACCCTTATATGGTAAAATGAAAA
1 AAATACCCCTATAGGGTAAAATGACCGAAA-TACCCCCATAGGGTAAAATGACTG
* * * ** *
19900764 AAATACCCCCATAGGGTAAAATGAGCAAAATACCCGTATAGGGTAAAATAAGC-G
1 AAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA-CTG
* ** * *
19900818 AAATATCCCC-ATAGGGTAAAATGATCGAAATACCCCCATAAAGTAAAATTACCG
1 AAATA-CCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * *
19900872 AAATACCTCC-ATAGGATAAAATGACCGAAATACCCCCATAGGGTAGAATGACCG
1 AAATACC-CCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* *
19900926 AAGTACCCCTATGGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
**
19900980 TTATACCCCTA
1 AAATACCCCTA
19900991 GGAGATGAAA
Statistics
Matches: 282, Mismatches: 44, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
53 55 0.20
54 220 0.78
55 7 0.02
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (54 bp):
AAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
Found at i:19901369 original size:28 final size:28
Alignment explanation
Indices: 19901337--19901405 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
19901327 GTTACTGTAC
19901337 TGGGCTAAGGCCCACACTGATACT-ATAT
1 TGGGCTAAGGCCCACACTGATACTGA-AT
* **
19901365 TGGGCTAAGGCCCACAGTTTTACTGAAT
1 TGGGCTAAGGCCCACACTGATACTGAAT
19901393 TGGGCTAAGGCCC
1 TGGGCTAAGGCCC
19901406 TAATTGTACT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (28 bp):
TGGGCTAAGGCCCACACTGATACTGAAT
Found at i:19902214 original size:14 final size:14
Alignment explanation
Indices: 19902195--19902221 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
19902185 CATTTCTTGG
19902195 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
19902209 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
19902222 ACTGGACCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:19902561 original size:149 final size:148
Alignment explanation
Indices: 19902358--19902649 Score: 458
Period size: 149 Copynumber: 2.0 Consensus size: 148
19902348 GTTTGCCTCG
* * *
19902358 ATACTTCAAATTACTCTCGGTTTTGTGCTTCTAGTAGTGTTTGCCGAGCTATTTTTCGCCCTTTG
1 ATACTTCAAATTACTCTCGATTTTGTGCTTCTAGTAGTGTCTGCCGAGCCATTTTTCGCCCTTTG
* * * *
19902423 TGCAAATTTGTCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAACTAAACTTCAACA
66 TGCAAATCTGTCGAAAATAACAAAAATTCATCAAAATTAATTATAAAATTAAATAAAATTCAACA
19902488 TGTTCATATTTTATCTCA
131 TGTTCATATTTTATCTCA
* * ** *
19902506 ATACTTCAAATTGCTTCTCGATTTTGTTCTTCTAGTAGTGTCTGTTGAGCCATTTTTTGCCCTTT
1 ATACTTCAAATTAC-TCTCGATTTTGTGCTTCTAGTAGTGTCTGCCGAGCCATTTTTCGCCCTTT
*
19902571 GTGCAAATCTGTTGAAAATAACAAAAATTCATCAAAATTAATTATAAAATTAAATAAAATTCAAC
65 GTGCAAATCTGTCGAAAATAACAAAAATTCATCAAAATTAATTATAAAATTAAATAAAATTCAAC
19902636 ATGTTCATATTTTA
130 ATGTTCATATTTTA
19902650 AGTGCACTTT
Statistics
Matches: 130, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
148 13 0.10
149 117 0.90
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (148 bp):
ATACTTCAAATTACTCTCGATTTTGTGCTTCTAGTAGTGTCTGCCGAGCCATTTTTCGCCCTTTG
TGCAAATCTGTCGAAAATAACAAAAATTCATCAAAATTAATTATAAAATTAAATAAAATTCAACA
TGTTCATATTTTATCTCA
Found at i:19906069 original size:17 final size:18
Alignment explanation
Indices: 19906047--19906088 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
19906037 CTTATCGAAT
19906047 AAACT-ATGATTAAATTA
1 AAACTAATGATTAAATTA
*
19906064 AAACTAATTATTAAATT-
1 AAACTAATGATTAAATTA
19906081 AAACTAAT
1 AAACTAAT
19906089 CCTAACTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (18 bp):
AAACTAATGATTAAATTA
Found at i:19906471 original size:35 final size:35
Alignment explanation
Indices: 19906427--19907083 Score: 1244
Period size: 35 Copynumber: 18.8 Consensus size: 35
19906417 TTCACTTGTC
* * *
19906427 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906462 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906497 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906532 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906567 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906602 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906637 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906672 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906707 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906742 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906777 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906812 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906847 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906882 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906917 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
19906952 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
*
19906987 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
* *
19907022 -TTTCTTGCAGGGAATCTCTCATGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
*
19907056 TGTTGTTGCAGGGAATCTCTCCTGTTCA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCA
19907084 TGTATCATTT
Statistics
Matches: 611, Mismatches: 10, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
34 31 0.05
35 580 0.95
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.40
Consensus pattern (35 bp):
TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
Done.