Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 61 of 141
Found at i:19909445 original size:105 final size:106
Alignment explanation
Indices: 19909310--19909516 Score: 380
Period size: 105 Copynumber: 2.0 Consensus size: 106
19909300 TATCTAATCC
* *
19909310 ATTTTAAGGCTTGATTGAGAGGTTTGTAATTAATTACTAATCTTGGCGTTCCTCTTTCAAGTTCT
1 ATTTTAAGGCTTGATTGAGAGGTTTGTAATTAATTACTAATCTTGGCGGTCCTCTTTCAAGTTAT
19909375 GCA-TTTTTATTACATAGAATGCTGAACAACTCCAAGGAGA
66 GCATTTTTTATTACATAGAATGCTGAACAACTCCAAGGAGA
19909415 ATTTTAAGGCTTGATTGAGAGGTTTGTAATTAATTACTAATCTTGGCGGTCCTCTTTCAAGTTAT
1 ATTTTAAGGCTTGATTGAGAGGTTTGTAATTAATTACTAATCTTGGCGGTCCTCTTTCAAGTTAT
*
19909480 GCATTTTTTATTACATAGAATGTTGAACAACTCCAAG
66 GCATTTTTTATTACATAGAATGCTGAACAACTCCAAG
19909517 AGGAACTGCT
Statistics
Matches: 98, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
105 66 0.67
106 32 0.33
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (106 bp):
ATTTTAAGGCTTGATTGAGAGGTTTGTAATTAATTACTAATCTTGGCGGTCCTCTTTCAAGTTAT
GCATTTTTTATTACATAGAATGCTGAACAACTCCAAGGAGA
Found at i:19909745 original size:21 final size:22
Alignment explanation
Indices: 19909715--19909759 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
19909705 GAACAAATTG
19909715 TTGATTCTATTTCTTTCTTG-AT
1 TTGATTCTA-TTCTTTCTTGTAT
*
19909737 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCTTTCTTGTAT
19909758 TT
1 TT
19909760 CTCTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCTTTCTTGTAT
Found at i:19914011 original size:30 final size:30
Alignment explanation
Indices: 19913954--19914015 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
19913944 AGAACTCAGA
* *
19913954 AATATTTACAAAAAGAGGTATCTAATTTTT
1 AATATTTACAAAAAGAGGTACCAAATTTTT
19913984 AATATTTACAAAAAGA-GTAACCAAATTTTT
1 AATATTTACAAAAAGAGGT-ACCAAATTTTT
19914014 AA
1 AA
19914016 AAAGAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.35
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGTACCAAATTTTT
Found at i:19930532 original size:15 final size:15
Alignment explanation
Indices: 19930512--19930543 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
19930502 GCAAATTACC
*
19930512 TTTTGACCTTCTTGA
1 TTTTGACCATCTTGA
19930527 TTTTGACCATCTTGA
1 TTTTGACCATCTTGA
19930542 TT
1 TT
19930544 GTTACCCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.12, T:0.53
Consensus pattern (15 bp):
TTTTGACCATCTTGA
Found at i:19935687 original size:33 final size:34
Alignment explanation
Indices: 19935640--19935704 Score: 80
Period size: 33 Copynumber: 1.9 Consensus size: 34
19935630 GTGGTCAAGT
* *
19935640 AGTATCAGTCTGGG-CTTCAGCCCTATACAGTATC
1 AGTATCAGTCTGGGCCTT-AGCCCAAAACAGTATC
*
19935674 AGTA-CAGTGTGGGCCTTAGCCCAAAACAGTA
1 AGTATCAGTCTGGGCCTTAGCCCAAAACAGTA
19935705 ACAATGTGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 20 0.74
34 7 0.26
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (34 bp):
AGTATCAGTCTGGGCCTTAGCCCAAAACAGTATC
Found at i:19935713 original size:28 final size:27
Alignment explanation
Indices: 19935673--19935725 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
19935663 TATACAGTAT
* *
19935673 CAGTACAGTGTGGGCCTTAGCCCAAAA
1 CAGTACAATGTGGGCCTTAGACCAAAA
19935700 CAGTAACAATGTGGGCCTTAGACCAA
1 CAGT-ACAATGTGGGCCTTAGACCAA
19935726 TACTAGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGTACAATGTGGGCCTTAGACCAAAA
Found at i:19936143 original size:27 final size:27
Alignment explanation
Indices: 19936093--19936263 Score: 123
Period size: 27 Copynumber: 6.3 Consensus size: 27
19936083 GGGGTATAAT
*** *
19936093 AGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTCCAGGAGTATTTC
**
19936120 AGTCATTTTACCCTTTAGGAGTATTTC
1 AGTCATTTTACCCTCCAGGAGTATTTC
* * *
19936147 AGTCATTTAACCCTCCGGGGGTATTTC
1 AGTCATTTTACCCTCCAGGAGTATTTC
*
19936174 -GATCATTTTACCCTCCAGGAGGTATTTT
1 AG-TCATTTTACCCTCCAGGA-GTATTTC
* * * *
19936202 GGTCATCTTACCCTCTGATG-GTATTTC
1 AGTCATTTTACCCTC-CAGGAGTATTTC
* * *
19936229 -GATCATCTTACCCTCCGGGGGTATTTC
1 AG-TCATTTTACCCTCCAGGAGTATTTC
*
19936256 GGTCATTT
1 AGTCATTT
19936264 GCCCACGAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
26 3 0.03
27 92 0.79
28 19 0.16
29 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACCCTCCAGGAGTATTTC
Found at i:19936180 original size:54 final size:54
Alignment explanation
Indices: 19936093--19936263 Score: 186
Period size: 54 Copynumber: 3.1 Consensus size: 54
19936083 GGGGTATAAT
* **
19936093 AGTCATTTTACCCTATGGGGGTATTTC-AGTCATTTTACCCTTTAGGA-GTATTTC
1 AGTCA-TTTACCCTCTGGGGGTATTTCGA-TCATTTTACCCTCCAGGAGGTATTTC
* *
19936147 AGTCATTTAACCCTCCGGGGGTATTTCGATCATTTTACCCTCCAGGAGGTATTTT
1 AGTCATTT-ACCCTCTGGGGGTATTTCGATCATTTTACCCTCCAGGAGGTATTTC
* ** * *
19936202 GGTCATCTTACCCTCTGATGGTATTTCGATCATCTTACCCTCC-GGGGGTATTTC
1 AGTCAT-TTACCCTCTGGGGGTATTTCGATCATTTTACCCTCCAGGAGGTATTTC
*
19936256 GGTCATTT
1 AGTCATTT
19936264 GCCCACGAAT
Statistics
Matches: 101, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
53 5 0.05
54 52 0.51
55 42 0.42
56 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (54 bp):
AGTCATTTACCCTCTGGGGGTATTTCGATCATTTTACCCTCCAGGAGGTATTTC
Found at i:19936829 original size:36 final size:36
Alignment explanation
Indices: 19936779--19936851 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
19936769 CCTCCTCGAG
19936779 GAAAACACTAAAACCGCAACAAGCAGCACATTGTGA
1 GAAAACACTAAAACCGCAACAAGCAGCACATTGTGA
*
19936815 GAAAACACTGAAACCGCAACAAGCAGCACATTGTGA
1 GAAAACACTAAAACCGCAACAAGCAGCACATTGTGA
19936851 G
1 G
19936852 GAAAGCATCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.45, C:0.25, G:0.19, T:0.11
Consensus pattern (36 bp):
GAAAACACTAAAACCGCAACAAGCAGCACATTGTGA
Found at i:19937002 original size:5 final size:5
Alignment explanation
Indices: 19936982--19937015 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
19936972 GCACTGGAAT
*
19936982 GAAGA GGAGAA GAAGA GAAGA GAAGA GAAGA GAA
1 GAAGA GAAG-A GAAGA GAAGA GAAGA GAAGA GAA
19937016 AAAAGAGGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (5 bp):
GAAGA
Found at i:19943337 original size:28 final size:28
Alignment explanation
Indices: 19943264--19943356 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 28
19943254 GAGCCCTATA
*
19943264 CAATATCAGT-ATAGTGTCGGCCTTAGCC
1 CAATA-CAGTAATAGTGTGGGCCTTAGCC
* * * * *
19943292 CAAAACAATAACAATGTGGGCATTAGCC
1 CAATACAGTAATAGTGTGGGCCTTAGCC
19943320 CAATACAGTAATAGTGTGGGCCTTAGCC
1 CAATACAGTAATAGTGTGGGCCTTAGCC
19943348 CAATACAGT
1 CAATACAGT
19943357 GATCAGTACA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 3 0.06
28 50 0.94
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (28 bp):
CAATACAGTAATAGTGTGGGCCTTAGCC
Found at i:19945852 original size:5 final size:5
Alignment explanation
Indices: 19945834--19945867 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
19945824 GCACTGGAAT
19945834 GAAGA GAAGAA GAAGA GAAGA GAAGA GAAGA GAA
1 GAAGA GAAG-A GAAGA GAAGA GAAGA GAAGA GAA
19945868 AAGAGAAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (5 bp):
GAAGA
Found at i:19948706 original size:4 final size:4
Alignment explanation
Indices: 19948697--19948726 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
19948687 TGGAAAACCT
*
19948697 AAGA AAGA AATA AAGA AAGA AAGA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
19948727 ACGAAACTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (4 bp):
AAGA
Found at i:19951363 original size:25 final size:25
Alignment explanation
Indices: 19951335--19951387 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
19951325 AATAAAACAA
19951335 TCAA-ATCACATTAATATTACACATT
1 TCAACATCACATTAA-ATTACACATT
* * *
19951360 TCAACTTCACATTAAATTTCACTTT
1 TCAACATCACATTAAATTACACATT
19951385 TCA
1 TCA
19951388 CACTATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (25 bp):
TCAACATCACATTAAATTACACATT
Found at i:19958275 original size:42 final size:43
Alignment explanation
Indices: 19958194--19958278 Score: 127
Period size: 42 Copynumber: 2.0 Consensus size: 43
19958184 CCATATTTCA
* *
19958194 TTTCTCATTTCATAATCATTTCTCATATTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTATCATATTTGCCATTTCAATAT
* *
19958237 TTTCTCATCTCATATTCA-TTATCATATTTGTCATTTCAATAT
1 TTTCTCATCTCATAATCATTTATCATATTTGCCATTTCAATAT
19958279 CAATCACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
42 22 0.58
43 16 0.42
ACGTcount: A:0.26, C:0.20, G:0.02, T:0.52
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTATCATATTTGCCATTTCAATAT
Found at i:19971761 original size:31 final size:31
Alignment explanation
Indices: 19971723--19971783 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
19971713 GAATTACGAA
19971723 GGATTATATGCTTGTGTATCCCGAAAGAGAG
1 GGATTATATGCTTGTGTATCCCGAAAGAGAG
19971754 GGATTATATGCTTGTGTATCCCGAAAGAGA
1 GGATTATATGCTTGTGTATCCCGAAAGAGA
19971784 TCTTACTCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (31 bp):
GGATTATATGCTTGTGTATCCCGAAAGAGAG
Found at i:19972556 original size:42 final size:42
Alignment explanation
Indices: 19972497--19972669 Score: 337
Period size: 42 Copynumber: 4.1 Consensus size: 42
19972487 ATGCCCTTAG
19972497 TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
1 TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
19972539 TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
1 TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
19972581 TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
1 TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
19972623 TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
1 TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
19972665 GTCTA
1 -TCTA
19972670 TCTAGTCCGA
Statistics
Matches: 130, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
42 126 0.97
43 4 0.03
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.27
Consensus pattern (42 bp):
TCTAATCGGAAATGAGAAAATCGATTGAAAGAATAATATGTC
Found at i:19986757 original size:22 final size:22
Alignment explanation
Indices: 19986723--19986766 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
19986713 CAAATTTGTG
* *
19986723 AAAATTTATTATAAAAATAATT
1 AAAATTAAATATAAAAATAATT
**
19986745 AAAATTAAATATATTAATAATT
1 AAAATTAAATATAAAAATAATT
19986767 TAAGAGAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAAATATAAAAATAATT
Found at i:19989373 original size:50 final size:50
Alignment explanation
Indices: 19989319--19989420 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
19989309 TCCTCAGAAA
19989319 AAGACAGAGTTAATTCGCTTGAGGTCAAATTCGCATAAATTTCACAAACT
1 AAGACAGAGTTAATTCGCTTGAGGTCAAATTCGCATAAATTTCACAAACT
19989369 AAGACAGAGTTAATTCGCTTGAGGTCAAATTCGCATAAATTTCACAAACT
1 AAGACAGAGTTAATTCGCTTGAGGTCAAATTCGCATAAATTTCACAAACT
19989419 AA
1 AA
19989421 CTCTTCATCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (50 bp):
AAGACAGAGTTAATTCGCTTGAGGTCAAATTCGCATAAATTTCACAAACT
Found at i:19992464 original size:66 final size:66
Alignment explanation
Indices: 19992342--19992465 Score: 185
Period size: 66 Copynumber: 1.9 Consensus size: 66
19992332 TTATTGCATT
* * *
19992342 AATGTTGCTGTATGAGTTAATTCCAGATTGCGTTCAGAATTGTCGCCGCATCTGACAGATGTCTG
1 AATGTCGCTGCATGAGTTAATTCCAGATTGCGTTCAGAATTGTCGCCGAATCTGACAGATGTCTG
19992407 C
66 C
* * * *
19992408 AATGTCGCTGCATGGGTTAATTCTAGATTGCGTTCAGAATTGTCGCTGAATTTGACAG
1 AATGTCGCTGCATGAGTTAATTCCAGATTGCGTTCAGAATTGTCGCCGAATCTGACAG
19992466 CTATCTGGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (66 bp):
AATGTCGCTGCATGAGTTAATTCCAGATTGCGTTCAGAATTGTCGCCGAATCTGACAGATGTCTG
C
Found at i:20000615 original size:21 final size:20
Alignment explanation
Indices: 20000553--20000617 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
20000543 GCTGTTGATA
*
20000553 AGGAAGTTGATGCTGCAGAAG
1 AGGAAGTTGTTGCTG-AGAAG
* *
20000574 CAAG-AGTTGTTG-T-AGATG
1 -AGGAAGTTGTTGCTGAGAAG
20000592 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTGTTGCTG-AGAAG
20000613 AGGAA
1 AGGAA
20000618 ATTGCTGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
17 2 0.06
18 12 0.35
19 1 0.03
20 1 0.03
21 16 0.47
22 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.37, T:0.23
Consensus pattern (20 bp):
AGGAAGTTGTTGCTGAGAAG
Found at i:20002868 original size:50 final size:50
Alignment explanation
Indices: 20002751--20003086 Score: 338
Period size: 50 Copynumber: 6.7 Consensus size: 50
20002741 GAATATAACA
* * * ** * *
20002751 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCT-CGG
* * * * * *
20002800 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGA-GTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTT-TCATCTCGG
* * ** *
20002850 TGCCCATGCCATGTCCCAGGCATGGTCTTACGGGGGACCTTTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
* *
20002900 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTTTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
* * *
20002950 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
** * * *
20003000 TG-TTATCGCCATGTCCAAGACATGGTCTTATATGGGACCTCTCATCTCGG
1 TGCCAAT-GCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
* * *
20003050 TGCCAATTCCATGTCCCATACATGGTATTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
20003087 TCTCTTTACC
Statistics
Matches: 239, Mismatches: 42, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
48 3 0.01
49 36 0.15
50 196 0.82
51 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
Found at i:20002979 original size:150 final size:149
Alignment explanation
Indices: 20002751--20003086 Score: 379
Period size: 150 Copynumber: 2.2 Consensus size: 149
20002741 GAATATAACA
* * * ** * * *
20002751 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTACTGCCAATGCCATATCC
1 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGACCTTTCATCTACTGCCAACGCCATATCC
* ** * *
20002816 CAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCAT-GCCATGTCCCAGGCATGGTCTTA
66 CAGACATGGTCTTACATGAGACCTCTCATATAGGTG-CCATCGCCATGTCCAAGACATGGTCTTA
* * *
20002880 CGGGGGACCTTTCATCTTGG
130 CAGGGGACCTCTCATCTCGG
* *
20002900 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTTTCATCT-CGGTGCCAACGCCATGT
1 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGACCTTTCATCTAC--TGCCAACGCCATAT
* * **
20002964 CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGTTATCGCCATGTCCAAGACATGGTCTT
64 CCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCATCGCCATGTCCAAGACATGGTCTT
* *
20003029 ATATGGGACCTCTCATCTCGG
129 ACAGGGGACCTCTCATCTCGG
** * *
20003050 TGCCAATTCCATGTCCCATACATGGTATTACATGGGA
1 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGA
20003087 TCTCTTTACC
Statistics
Matches: 156, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
148 1 0.01
149 41 0.26
150 114 0.73
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (149 bp):
TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGACCTTTCATCTACTGCCAACGCCATATCC
CAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCATCGCCATGTCCAAGACATGGTCTTAC
AGGGGACCTCTCATCTCGG
Found at i:20006720 original size:4 final size:5
Alignment explanation
Indices: 20006684--20006725 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
20006674 ATTATGTATT
20006684 TTGAA TTGAA TTGAA TTGAA -TGAA TATAGAA TT-AA TTGAA TT
1 TTGAA TTGAA TTGAA TTGAA TTGAA T-T-GAA TTGAA TTGAA TT
20006726 TACTTATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
4 8 0.24
5 19 0.58
6 2 0.06
7 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (5 bp):
TTGAA
Found at i:20006723 original size:16 final size:15
Alignment explanation
Indices: 20006684--20006725 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
20006674 ATTATGTATT
20006684 TTGAATTGAATTGAA
1 TTGAATTGAATTGAA
20006699 TTGAA-TGAATATAGAA
1 TTGAATTGAAT-T-GAA
20006715 TT-AATTGAATT
1 TTGAATTGAATT
20006726 TACTTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 10 0.42
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (15 bp):
TTGAATTGAATTGAA
Found at i:20007150 original size:41 final size:41
Alignment explanation
Indices: 20007054--20007152 Score: 144
Period size: 41 Copynumber: 2.4 Consensus size: 41
20007044 TGCAGATACT
*
20007054 TGTCAGCTTGTGTGAGCGGCATGGTGTAGCTACATTCTGAC
1 TGTCAGCTTGTGTGAGCGGCATCGTGTAGCTACATTCTGAC
* * * *
20007095 CGTAAACTTGTGTGAGCGGCATCGTGTAGCTACATTTTGAC
1 TGTCAGCTTGTGTGAGCGGCATCGTGTAGCTACATTCTGAC
*
20007136 TGTCAGCTTTTGTGAGC
1 TGTCAGCTTGTGTGAGC
20007153 AGACCAATTT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.18, C:0.19, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTCAGCTTGTGTGAGCGGCATCGTGTAGCTACATTCTGAC
Found at i:20014154 original size:17 final size:17
Alignment explanation
Indices: 20014132--20014164 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
20014122 GTTAGTGAAC
20014132 ATTGTCATTGCATTTTT
1 ATTGTCATTGCATTTTT
20014149 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
20014165 AATGTTAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:20019371 original size:13 final size:13
Alignment explanation
Indices: 20019353--20019388 Score: 51
Period size: 11 Copynumber: 3.0 Consensus size: 13
20019343 CCAGCCCGCC
20019353 TATATTAATTTTT
1 TATATTAATTTTT
20019366 TATATT-A-TTTT
1 TATATTAATTTTT
20019377 TATA-TAATTTTT
1 TATATTAATTTTT
20019389 AAATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.05
11 9 0.43
12 5 0.24
13 6 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATATTAATTTTT
Found at i:20019547 original size:30 final size:30
Alignment explanation
Indices: 20019511--20019573 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
20019501 ACTTAACAAG
20019511 CAAATGCCTCTAAAATAAT-ATCAAAATTAA
1 CAAATGCCTCTAAAATAATAAT-AAAATTAA
20019541 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAATAAAATTAA
20019571 CAA
1 CAA
20019574 TAAAACAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 30 0.94
31 2 0.06
ACGTcount: A:0.56, C:0.16, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAATAAAATTAA
Found at i:20025592 original size:18 final size:16
Alignment explanation
Indices: 20025560--20025591 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
20025550 GAAGTATGGC
20025560 CGGCCACATGAGAGAG
1 CGGCCACATGAGAGAG
20025576 CGGCCACATGAGAGAG
1 CGGCCACATGAGAGAG
20025592 ACAAGGAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.38, T:0.06
Consensus pattern (16 bp):
CGGCCACATGAGAGAG
Found at i:20032250 original size:42 final size:43
Alignment explanation
Indices: 20032151--20032260 Score: 118
Period size: 44 Copynumber: 2.6 Consensus size: 43
20032141 CAGTGATATG
* * * *
20032151 GGGAATCAACACATAGCAACCCCTTTTCACAATCAAGGATACG
1 GGGAATCAACACTTAGCAACCCCTTTTCAAAATCAAGAATACA
* *
20032194 GTGGAAT-AAGCACTTAGCAACCACC-TTT-AAAATCAATAATTCA
1 G-GGAATCAA-CACTTAGCAACC-CCTTTTCAAAATCAAGAATACA
20032237 GGGAATCAACACTTAGCAACCCCT
1 GGGAATCAACACTTAGCAACCCCT
20032261 CGGGGAATCT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
41 2 0.04
42 17 0.30
43 16 0.29
44 19 0.34
45 2 0.04
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.21
Consensus pattern (43 bp):
GGGAATCAACACTTAGCAACCCCTTTTCAAAATCAAGAATACA
Found at i:20032274 original size:26 final size:26
Alignment explanation
Indices: 20032237--20032286 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20032227 CAATAATTCA
20032237 GGGAATCAACACTTAGCAACCCCTCG
1 GGGAATCAACACTTAGCAACCCCTCG
*
20032263 GGGAATCTACACTTAGCAACCCCT
1 GGGAATCAACACTTAGCAACCCCT
20032287 TTCTGATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (26 bp):
GGGAATCAACACTTAGCAACCCCTCG
Found at i:20032317 original size:41 final size:42
Alignment explanation
Indices: 20032260--20032370 Score: 161
Period size: 41 Copynumber: 2.7 Consensus size: 42
20032250 TAGCAACCCC
* *
20032260 TCGGGGAATCTACACTTAGCAACCCCTTTCTGATTAGAG-TT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTCTGATCAGAGATT
* * *
20032301 TCGGGGAACCTGCACTTAGCAACCCCTTTTTGATCAGTGATT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTCTGATCAGAGATT
*
20032343 TCAGGGAATCTGCACTTAGCAACCCCTT
1 TCGGGGAATCTGCACTTAGCAACCCCTT
20032371 ACATTCAATG
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
41 34 0.55
42 28 0.45
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (42 bp):
TCGGGGAATCTGCACTTAGCAACCCCTTTCTGATCAGAGATT
Found at i:20039617 original size:41 final size:41
Alignment explanation
Indices: 20039567--20039805 Score: 155
Period size: 42 Copynumber: 5.7 Consensus size: 41
20039557 TAACCGTTAC
20039567 TCGGTGGAATCAGCACTTAGCAACCACC-TTATATTCAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACC-CCTTTATATTCAGTGAT
* * * *
20039609 ACGGGGAATCAGCA-TATCGCAACCCCTTTTCACAATCAAG-GAT
1 TCGGGGAATCAGCACT-TAGCAACCCC-TTT-ATATTC-AGTGAT
* * * * * *
20039652 ACGGTAGAATCAGCACTTAGCAACCACCTTTAGAATCAATAAT
1 TCGG-GGAATCAGCACTTAGCAACC-CCTTTATATTCAGTGAT
* ** * * *
20039695 TTGGGGAATTTGCACTTAGCAACCCCTTTTTTATT-AGAGTT
1 TCGGGGAATCAGCACTTAGCAACCCC-TTTATATTCAGTGAT
* * *
20039736 TCGGGGAATCTGCACTTAACAACCCCTTTTTGA-TCAGTGATT
1 TCGGGGAATCAGCACTTAGCAACCCCTTTAT-ATTCAGTGA-T
* *
20039778 TCGGGGAATCTGCACTTAGCAACACCTT
1 TCGGGGAATCAGCACTTAGCAACCCCTT
20039806 ACATTCAATG
Statistics
Matches: 156, Mismatches: 28, Indels: 26
0.74 0.13 0.12
Matches are distributed among these distances:
40 9 0.06
41 48 0.31
42 55 0.35
43 20 0.13
44 21 0.13
45 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (41 bp):
TCGGGGAATCAGCACTTAGCAACCCCTTTATATTCAGTGAT
Found at i:20039675 original size:44 final size:44
Alignment explanation
Indices: 20039568--20039805 Score: 128
Period size: 41 Copynumber: 5.7 Consensus size: 44
20039558 AACCGTTACT
* *
20039568 CGGTGGAATCAGCACTTAGCAACCACC--TTATATTCAGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTTACAATCAGTGATA
*
20039610 CGG-GGAATCAGCA-TATCGCAACC-CCTTTTCACAATCAAG-GATA
1 CGGTGGAATCAGCACT-TAGCAACCACCTTTT-ACAATC-AGTGATA
* * * * *
20039653 CGGTAGAATCAGCACTTAGCAACCACC-TTTAGAATCAATAATT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTTACAATCAGTGATA
* ** ** * * * *
20039696 TGG-GGAATTTGCACTTAGCAACC-CCTTTT-TTATTAGAGTTT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTTACAATCAGTGATA
* * ** *
20039737 CGG-GGAATCTGCACTTAACAACC-CCTTTT-TGATCAGTGATTT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTTACAATCAGTGA-TA
*
20039779 CGG-GGAATCTGCACTTAGCAA-CACCTT
1 CGGTGGAATCAGCACTTAGCAACCACCTT
20039806 ACATTCAATG
Statistics
Matches: 156, Mismatches: 28, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
40 3 0.02
41 57 0.37
42 52 0.33
43 20 0.13
44 21 0.13
45 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTTACAATCAGTGATA
Found at i:20039689 original size:43 final size:44
Alignment explanation
Indices: 20039568--20039723 Score: 132
Period size: 41 Copynumber: 3.7 Consensus size: 44
20039558 AACCGTTACT
* *
20039568 CGGTGGAATCAGCACTTAGCAACCACC-TTATATTC-AGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAAGTGATA
*
20039610 CGG-GGAATCAGCA-TATCGCAACC-CCTTTTCACAATCAAG-GATA
1 CGGTGGAATCAGCACT-TAGCAACCACC-TTT-ACAATCAAGTGATA
* * * *
20039653 CGGTAGAATCAGCACTTAGCAACCACCTTTAGAATCAA-TAATT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAAGTGATA
* **
20039696 TGG-GGAATTTGCACTTAGCAACC-CCTTT
1 CGGTGGAATCAGCACTTAGCAACCACCTTT
20039724 TTTATTAGAG
Statistics
Matches: 93, Mismatches: 12, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
40 3 0.03
41 22 0.24
42 22 0.24
43 22 0.24
44 21 0.23
45 3 0.03
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (44 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAAGTGATA
Found at i:20047424 original size:148 final size:150
Alignment explanation
Indices: 20047014--20047516 Score: 771
Period size: 150 Copynumber: 3.3 Consensus size: 150
20047004 TAGACATTTT
*
20047014 TTCGTATTTTTTTCCTCGGATTTTATTACTTTTAAAAATATACTATTTTTTTAATTTTTTATTTT
1 TTCGTATTTTTTTCC-CGAATTTTATTACTTTTAAAAATATACTA-TTTTTTAATTTTTTATTTT
* * *
20047079 ACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTCTTTTTTAAATAAATTTAAAT
64 ACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAA
*
20047144 AAA--CTTATTTCGACCCTATG
129 AAACCCTTATTTCGGCCCTATG
* * *
20047164 TTCGTATTTTTATCCCAAATTTTATTACTTATAAAAAATATACTATTTTTTAATTTTTTTATTTT
1 TTCGTATTTTTTTCCCGAATTTTATTACTT-TTAAAAATATACTATTTTTTAA-TTTTTTATTTT
*
20047229 ACATTATTTTAGTATATTATATTTTAAATGTATTAATTTAGTGTGTTTTTTAAATAAA-TTAAAA
64 ACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAA
*
20047293 AAACCCTTATCTCGGCCCTATG
129 AAACCCTTATTTCGGCCCTATG
** *
20047315 TTCGTA-TTTTTTCTTGGATTTTATTACTTTTAAAAATATACTATTTTTTAATTTTTTATTTTAC
1 TTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAATATACTATTTTTTAATTTTTTATTTTAC
* *
20047379 AATATTTTAGTATATTATATTTGAAATGTATTAATTTAGTTTGTTTTTTAAATAAATTTTAAAAA
66 ATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAA-TTTAAAAA
* * *
20047444 ACCCCTTCTTTTGGCCCTATG
130 AACCCTTATTTCGGCCCTATG
20047465 TTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAATATACTATTTTTTAA
1 TTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAATATACTATTTTTTAA
20047517 ATTTAGAGTT
Statistics
Matches: 320, Mismatches: 26, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
148 66 0.21
149 50 0.16
150 141 0.44
151 63 0.20
ACGTcount: A:0.31, C:0.10, G:0.06, T:0.53
Consensus pattern (150 bp):
TTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAATATACTATTTTTTAATTTTTTATTTTAC
ATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAA
ACCCTTATTTCGGCCCTATG
Found at i:20047981 original size:96 final size:96
Alignment explanation
Indices: 20047817--20048021 Score: 410
Period size: 96 Copynumber: 2.1 Consensus size: 96
20047807 AAATACGAAC
20047817 ATTTTATTACTTTAAAAAATATACTATTTTTTTATTTTTTCCGTAATATTTTACTAAAATATGAC
1 ATTTTATTACTTTAAAAAATATACTATTTTTTTATTTTTTCCGTAATATTTTACTAAAATATGAC
20047882 ATTTCAGCCCTTTGTTCGTATTTTTTCCCGG
66 ATTTCAGCCCTTTGTTCGTATTTTTTCCCGG
20047913 ATTTTATTACTTTAAAAAATATACTATTTTTTTATTTTTTCCGTAATATTTTACTAAAATATGAC
1 ATTTTATTACTTTAAAAAATATACTATTTTTTTATTTTTTCCGTAATATTTTACTAAAATATGAC
20047978 ATTTCAGCCCTTTGTTCGTATTTTTTCCCGG
66 ATTTCAGCCCTTTGTTCGTATTTTTTCCCGG
20048009 ATTTTATTACTTT
1 ATTTTATTACTTT
20048022 CAATAAAAAA
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 109 1.00
ACGTcount: A:0.27, C:0.14, G:0.07, T:0.52
Consensus pattern (96 bp):
ATTTTATTACTTTAAAAAATATACTATTTTTTTATTTTTTCCGTAATATTTTACTAAAATATGAC
ATTTCAGCCCTTTGTTCGTATTTTTTCCCGG
Found at i:20052903 original size:14 final size:15
Alignment explanation
Indices: 20052879--20052907 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
20052869 AAAGAGGCAA
20052879 GAAGAAGGAAAAGAG
1 GAAGAAGGAAAAGAG
20052894 GAAG-AGGAAAAGAG
1 GAAGAAGGAAAAGAG
20052908 AACAAAGGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (15 bp):
GAAGAAGGAAAAGAG
Found at i:20063894 original size:21 final size:21
Alignment explanation
Indices: 20063864--20063911 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
20063854 ATCGAACTTT
* *
20063864 TTAAACCTTCTAGA-TTGCTTC
1 TTAAAGCTTCTA-ACTTGATTC
20063885 TTAAAGCTTCTAACTTGATTC
1 TTAAAGCTTCTAACTTGATTC
20063906 TTAAAG
1 TTAAAG
20063912 GCCTTTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (21 bp):
TTAAAGCTTCTAACTTGATTC
Found at i:20068497 original size:50 final size:50
Alignment explanation
Indices: 20068443--20069000 Score: 467
Period size: 50 Copynumber: 11.1 Consensus size: 50
20068433 TCGGGGAAAC
* * *
20068443 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAAGAAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGT
* * * ** * * * *
20068493 AAGATTCGTCATTGTGGCTTTAATCTTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATC-TGTTCCACTGCAACGCCAGGGAAGT
* ** * * *
20068544 AAGATTCACTATTATGGCTTTAATCTGTTCCACTGCACCGCCTA-GAAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCC-AGGGAAGT
* * * * ** * * *
20068594 AGGACTCGCCGTTGTGGCTTTAGTCTTTTTAACTGCAATGTCAGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGT
* *
20068644 AAGATTCGCCATTGTGGCTTTAATATGTTCCACTG-AACTGCCAGGGAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAAC-GCCAGGGAAGT
* * * ** * * *
20068694 AAGACTCGCCGTTGTGGCTTTAGTCTTTTTAACTGCAATGTCAGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGT
* * * *
20068744 AAGATTCGCAGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGT
* * * ** * * *
20068794 AAGACTCGCCGTTGTGGCTTTAGTCTTTTTAACTGCAATGTC-GGGCAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGG-AAGT
* *
20068844 AAGATTCGCTGTTGTGGCTTTAATCTGTTCCACTGC-ACAGCTAGGGAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAAC-GCCAGGGAAGT
** * ** * * * *
20068894 AAGATTTACCGTTGTGGCTTTAATCTTTTTAACTACAACGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGT
* * * *
20068944 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGCCTGGAAAGT
1 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGT
20068994 AAGATTC
1 AAGATTC
20069001 AACCTACTCC
Statistics
Matches: 384, Mismatches: 115, Indels: 18
0.74 0.22 0.03
Matches are distributed among these distances:
49 6 0.02
50 335 0.87
51 43 0.11
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (50 bp):
AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGT
Found at i:20068999 original size:100 final size:100
Alignment explanation
Indices: 20068425--20068997 Score: 815
Period size: 100 Copynumber: 5.7 Consensus size: 100
20068415 TTCTGTCTGG
* **
20068425 CTGCAATGTCGGGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAAGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
* * * *
20068490 AGTAAGATTCGTCATTGTGGCTTTAATCTTTTTTAA
66 AGTAAGACTCGCCGTTGTGGCTTTAGTC-TTTTTAA
* ** * *
20068526 CTGCAATGTCGGGGAAGCAAGATTCACTATTATGGCTTTAATCTGTTCCACTGCACCGCCTAGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
*
20068591 AGTAGGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
66 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
* * * * * * *
20068626 CTGCAATGTCAGGGAAGCAAGATTCGCCATTGTGGCTTTAATATGTTCCACTGAACTGCCAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
20068691 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
66 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
* *
20068726 CTGCAATGTCAGGGAAGCAAGATTCGCAGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
20068791 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
66 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
* * * *
20068826 CTGCAATGTCGGGCAAGCAAGATTCGCTGTTGTGGCTTTAATCTGTTCCACTGCACAG-CTAGGG
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT-GGA
* ** *
20068890 AAGTAAGATTTACCGTTGTGGCTTTAATCTTTTTAA
65 AAGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
* * * *
20068926 CTACAACGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGCCTGGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
20068991 AGTAAGA
66 AGTAAGA
20068998 TTCAACCTAC
Statistics
Matches: 424, Mismatches: 46, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
99 2 0.00
100 338 0.80
101 84 0.20
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (100 bp):
CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
Found at i:20069234 original size:44 final size:44
Alignment explanation
Indices: 20069186--20069295 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 44
20069176 TTCGATCGAC
*
20069186 TCCACTACTG-CTTAGGGAGATAAGACCTGTAAT-TTCCAACCTAT
1 TCCACTACTGAC-CAGGGAGATAAGACCTGTAATCTT-CAACCTAT
* * *
20069230 TCCACTGCTGACCAGGGAGATAAGACTTGTCATCTTCAACCTAT
1 TCCACTACTGACCAGGGAGATAAGACCTGTAATCTTCAACCTAT
* *
20069274 TCCACTGCTAACCAGGGAGATA
1 TCCACTACTGACCAGGGAGATA
20069296 GAGTTACTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
44 56 0.95
45 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (44 bp):
TCCACTACTGACCAGGGAGATAAGACCTGTAATCTTCAACCTAT
Found at i:20069421 original size:132 final size:132
Alignment explanation
Indices: 20069243--20069918 Score: 953
Period size: 132 Copynumber: 5.1 Consensus size: 132
20069233 ACTGCTGACC
** * * * *
20069243 AGGGAGATAAGA-CTTGTCATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGAGTTACTAGC
1 AGGGAGATAAGATC-TGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGC
* * *
20069307 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTA
65 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTA
20069372 CTT
130 CTT
* * * *
20069375 AGGGAGATAAGATCTAAAATCTTCAATCTATTCCATTGCTGCCCAGGGA-AGTAGAATTATTGGC
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGA-TAGAATTACTGGC
* * *
20069439 TTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATCTTCGACCTGCTCCACTACTA
65 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTA
20069504 CTT
130 CTT
* * * * *
20069507 AGGGAGATGAGATCTGAAATCCTCAATCGATTCCACTGCTGACTAGGGAGATAGAATTATTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCT
* *
20069572 TCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCCGCCATCTTCGATCTGCTCCACTACTTC
66 TCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTAC
20069637 TT
131 TT
* ** * * ***
20069639 AGGGAGATAAGATCTGTAAT-TTCTAGCCTATTCCACTACTGACCAAGGAGATAGGGCTACTGGC
1 AGGGAGATAAGATCTGAAATCTTC-AATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGC
*
20069703 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTG
65 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTA
20069768 CTT
130 CTT
* * *
20069771 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCT
* * * *
20069836 TCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGC
66 TCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTAC
20069901 TT
131 TT
20069903 AGGGAGATAAGATCTG
1 AGGGAGATAAGATCTG
20069919 CTATCTCCGA
Statistics
Matches: 484, Mismatches: 55, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
131 3 0.01
132 477 0.99
133 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCT
TCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTAC
TT
Found at i:20069930 original size:44 final size:44
Alignment explanation
Indices: 20069613--20069931 Score: 136
Period size: 44 Copynumber: 7.2 Consensus size: 44
20069603 AAAACCCGCC
* * *
20069613 ATCTTCGATCTGCTCCACTACTTCTTAGGGAGATAAGATCTG-T
1 ATCTTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGCT
* * * * ** *
20069656 AAT-TTCTAGCCTATTCCACTACTGAC-CAAGGAGAT-AGGGCTACT
1 -ATCTTCGA-TCTACTCCACTACTG-CTCAGGGAGATAAGATCTGCT
** * * * * * *
20069700 GGCTTCAATGTACTCCACTGTAAC--CTCAGGGAGGTAAAATCCGCC
1 ATCTTCGATCTACTCCAC--T-ACTGCTCAGGGAGATAAGATCTGCT
* *
20069745 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG-T
1 ATCTTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGCT
** * * * *
20069788 AATCTTTAATCTATTCCACTGCTGCCCAGGGAGAT-AGAAT-TACT
1 -ATCTTCGATCTACTCCACTACTGCTCAGGGAGATAAG-ATCTGCT
** * * * * * ** *
20069832 GGCTTCAATGTACTCCACTA-TAACCTCAGGGAGGTAAAATCCACC
1 ATCTTCGATCTACTCCACTACT--GCTCAGGGAGATAAGATCTGCT
*
20069877 ATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCT
1 ATCTTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGCT
*
20069921 ATCTCCGATCT
1 ATCTTCGATCT
20069932 CCTTCGCCAC
Statistics
Matches: 190, Mismatches: 66, Indels: 38
0.65 0.22 0.13
Matches are distributed among these distances:
42 3 0.02
43 34 0.18
44 113 0.59
45 37 0.19
46 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (44 bp):
ATCTTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGCT
Found at i:20069964 original size:45 final size:45
Alignment explanation
Indices: 20069911--20070233 Score: 242
Period size: 45 Copynumber: 7.2 Consensus size: 45
20069901 TTAGGGAGAT
* * *
20069911 AAGATCTGCTATCTCCGATCTCCTTCGCCACAAGTATGGGAAGAC
1 AAGATCTGCTATCTCTGATCTACTTCGCCACCAGTATGGGAAGAC
* * * * * ***
20069956 AATATCTGCTATCTCTGATCTTCTTC-ACGCCAATACATGAAGAC
1 AAGATCTGCTATCTCTGATCTACTTCGCCACCAGTATGGGAAGAC
* * ** ***
20070000 AAGATCTGCTATATTTGATCTACTTCGCTGCCAGTACAAGAAGAC
1 AAGATCTGCTATCTCTGATCTACTTCGCCACCAGTATGGGAAGAC
* *
20070045 AAGATCTGTTTTCT-TCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTCT-GATCTACTTCGCCACCAGTATGGGAAGAC
* * * * *
20070090 AAGATCTGCTATCTCTGATGTTCTTCACCACCAGTATGGGACGAT
1 AAGATCTGCTATCTCTGATCTACTTCGCCACCAGTATGGGAAGAC
* * * *** * ***
20070135 GAGATCTGCTATCT-TCAATCCACTTC-ATGCTAGTACATGAAGAC
1 AAGATCTGCTATCTCT-GATCTACTTCGCCACCAGTATGGGAAGAC
* * *
20070179 AAGATCTGCTTTCT-TCGATCTATTTCGCCACCAGTATAGGAAGAC
1 AAGATCTGCTATCTCT-GATCTACTTCGCCACCAGTATGGGAAGAC
20070224 AAGATCTGCT
1 AAGATCTGCT
20070234 GCTTTTCAAC
Statistics
Matches: 215, Mismatches: 58, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
44 65 0.30
45 149 0.69
46 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (45 bp):
AAGATCTGCTATCTCTGATCTACTTCGCCACCAGTATGGGAAGAC
Found at i:20070170 original size:134 final size:134
Alignment explanation
Indices: 20069911--20070233 Score: 414
Period size: 134 Copynumber: 2.4 Consensus size: 134
20069901 TTAGGGAGAT
* * * * *
20069911 AAGATCTGCTATCTCCGATCTCCTTCGCCACAAGTATGGGAAGACAATATCTGCTATCTCTGATC
1 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTCTGATC
* * ** * *
20069976 TTCTTCACGCCAATACATGAAGACAAGATCTGCTATATTTGATCTACTTCGCTGCCAGTACAAGA
66 TTCTTCACACCAATACAGGAAGACAAGATCTGCTATATTCAATCCACTTCGATGCCAGTACAAGA
20070041 AGAC
131 AGAC
* *
20070045 AAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTCTGATG
1 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTCTGATC
* ** * ** * * *
20070110 TTCTTCACCACCAGTATGGGACGATGAGATCTGCTATCTTCAATCCACTTC-ATGCTAGTACATG
66 TTCTTCA-CACCAATACAGGAAGACAAGATCTGCTATATTCAATCCACTTCGATGCCAGTACAAG
20070174 AAGAC
130 AAGAC
* *
20070179 AAGATCTGCTTTCTTCGATCTATTTCGCCACCAGTATAGGAAGACAAGATCTGCT
1 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCT
20070234 GCTTTTCAAC
Statistics
Matches: 163, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
134 132 0.81
135 31 0.19
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (134 bp):
AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTCTGATC
TTCTTCACACCAATACAGGAAGACAAGATCTGCTATATTCAATCCACTTCGATGCCAGTACAAGA
AGAC
Found at i:20071541 original size:7 final size:7
Alignment explanation
Indices: 20071520--20071570 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
20071510 CCTTAGCCTC
20071520 TTCATTT
1 TTCATTT
20071527 TT-ACTTT
1 TTCA-TTT
20071534 TTCATTT
1 TTCATTT
20071541 TTCA-TT
1 TTCATTT
*
20071547 TTCTTTT
1 TTCATTT
20071554 TTCATTT
1 TTCATTT
20071561 TTCATATT
1 TTCAT-TT
20071569 TT
1 TT
20071571 TTTCTGACTC
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 6 0.16
7 27 0.71
8 5 0.13
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (7 bp):
TTCATTT
Found at i:20071548 original size:13 final size:13
Alignment explanation
Indices: 20071520--20071561 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
20071510 CCTTAGCCTC
*
20071520 TTCATTTTTACTTT
1 TTCATTTTT-CATT
20071534 TTCATTTTTCATT
1 TTCATTTTTCATT
*
20071547 TTCTTTTTTCATT
1 TTCATTTTTCATT
20071560 TT
1 TT
20071562 TCATATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (13 bp):
TTCATTTTTCATT
Found at i:20072468 original size:12 final size:12
Alignment explanation
Indices: 20072441--20072560 Score: 80
Period size: 12 Copynumber: 9.8 Consensus size: 12
20072431 TTTTTCTCCT
**
20072441 TTTTTATTTTCT
1 TTTTTATTTTGA
20072453 TTTTTATTTTGA
1 TTTTTATTTTGA
**
20072465 TTTTTACTTTTTCC
1 TTTTTA--TTTTGA
20072479 TTTTTACTTTTGA
1 TTTTTA-TTTTGA
* * **
20072492 GTTTGATTTTTC
1 TTTTTATTTTGA
* **
20072504 TTTTTCTTTTTC
1 TTTTTATTTTGA
*
20072516 TTCTT-TTTTGA
1 TTTTTATTTTGA
*
20072527 TTTTGATTTTGA
1 TTTTTATTTTGA
*
20072539 TTTTGATTTTGA
1 TTTTTATTTTGA
20072551 TTTTTATTTT
1 TTTTTATTTT
20072561 TTTATTGAAT
Statistics
Matches: 85, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
11 7 0.08
12 60 0.71
13 8 0.09
14 10 0.12
ACGTcount: A:0.11, C:0.07, G:0.07, T:0.74
Consensus pattern (12 bp):
TTTTTATTTTGA
Found at i:20072530 original size:6 final size:6
Alignment explanation
Indices: 20072521--20072560 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
20072511 TTTTCTTCTT
*
20072521 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTTA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
20072561 TTTATTGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.72
Consensus pattern (6 bp):
TTTTGA
Found at i:20072561 original size:6 final size:6
Alignment explanation
Indices: 20072441--20072561 Score: 66
Period size: 6 Copynumber: 19.8 Consensus size: 6
20072431 TTTTTCTCCT
* * *
20072441 TTTTTA TTTTCT- TTTTTA TTTTGA TTTTTA CTTTTTCC TTTTTA CTTTTGA
1 TTTTTA TTTT-TA TTTTTA TTTTTA TTTTTA -TTTTT-A TTTTTA -TTTTTA
* * * * * * * * *
20072492 GTTTGA TTTTTC TTTTTC TTTTTC TTCTT- TTTTGA TTTTGA TTTTGA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
20072539 TTTTGA TTTTGA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTT
20072562 TTATTGAATC
Statistics
Matches: 96, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
5 4 0.04
6 76 0.79
7 16 0.17
ACGTcount: A:0.11, C:0.07, G:0.07, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:20073389 original size:25 final size:25
Alignment explanation
Indices: 20073342--20073398 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
20073332 AAAGTCCAAT
*
20073342 AGAATGAAAGAATAATTATTCAAAA
1 AGAATGAAAGAATAATTACTCAAAA
*
20073367 AGAATGAAAGAAT-ATTGGCTCAAAA
1 AGAATGAAAGAATAATT-ACTCAAAA
20073392 ATGAATG
1 A-GAATG
20073399 TAAATATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 3 0.11
25 20 0.71
26 5 0.18
ACGTcount: A:0.54, C:0.05, G:0.18, T:0.23
Consensus pattern (25 bp):
AGAATGAAAGAATAATTACTCAAAA
Found at i:20077374 original size:3 final size:3
Alignment explanation
Indices: 20077366--20077599 Score: 468
Period size: 3 Copynumber: 78.0 Consensus size: 3
20077356 AAAATTTATA
20077366 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20077414 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20077462 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20077510 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20077558 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20077600 GAATTAGTAT
Statistics
Matches: 231, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 231 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:20082991 original size:26 final size:25
Alignment explanation
Indices: 20082938--20082994 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
20082928 CAAAAATATT
20082938 TTTTCACAATATTTTTTAAAAGCAC
1 TTTTCACAATATTTTTTAAAAGCAC
* **
20082963 TTTTCTACTATATTTTTTAAAAGGTC
1 TTTTC-ACAATATTTTTTAAAAGCAC
20082989 TTTTCA
1 TTTTCA
20082995 AAAATAATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (25 bp):
TTTTCACAATATTTTTTAAAAGCAC
Found at i:20084800 original size:29 final size:29
Alignment explanation
Indices: 20084751--20084823 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 29
20084741 AATAAAAATC
* * *
20084751 AATAAAAGTTATAAATTTA-TTAAATTTA
1 AATAAAAATTAAAAATATATTTAAATTTA
*
20084779 AATAAAAATATAAAAATATATTTAAATTTT
1 AATAAAAAT-TAAAAATATATTTAAATTTA
*
20084809 ATTAAAAATTAAAAA
1 AATAAAAATTAAAAA
20084824 AAACTATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
28 8 0.21
29 14 0.37
30 16 0.42
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (29 bp):
AATAAAAATTAAAAATATATTTAAATTTA
Found at i:20084843 original size:19 final size:18
Alignment explanation
Indices: 20084821--20084912 Score: 87
Period size: 19 Copynumber: 4.8 Consensus size: 18
20084811 TAAAAATTAA
20084821 AAAAAACTATAAAAATCGT
1 AAAAAA-TATAAAAATCGT
*
20084840 AAAAAATAATAAAAATTGT
1 AAAAAAT-ATAAAAATCGT
**
20084859 AAAATTTTATAAAAATCGTT
1 AAAA-AATATAAAAATCG-T
*
20084879 AAAAAATATAAAATATAG-
1 AAAAAATATAAAA-ATCGT
20084897 AAAAAATTATAAAAAT
1 AAAAAA-TATAAAAAT
20084913 TATCGTACAA
Statistics
Matches: 61, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
18 9 0.15
19 43 0.70
20 9 0.15
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.27
Consensus pattern (18 bp):
AAAAAATATAAAAATCGT
Found at i:20084853 original size:38 final size:38
Alignment explanation
Indices: 20084811--20084912 Score: 118
Period size: 38 Copynumber: 2.7 Consensus size: 38
20084801 TAAATTTTAT
*
20084811 TAAAAATTAAAAAAAACTATAAAAATCG-TAAAAAATAA
1 TAAAAATTAAAAAAAATTATAAAAATCGTTAAAAAAT-A
** **
20084849 TAAAAATTGTAAAATTTTATAAAAATCGTTAAAAAATA
1 TAAAAATTAAAAAAAATTATAAAAATCGTTAAAAAATA
*
20084887 T-AAAATATAGAAAAAATTATAAAAAT
1 TAAAAAT-TAAAAAAAATTATAAAAAT
20084913 TATCGTACAA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
37 5 0.09
38 40 0.75
39 8 0.15
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (38 bp):
TAAAAATTAAAAAAAATTATAAAAATCGTTAAAAAATA
Found at i:20084910 original size:8 final size:9
Alignment explanation
Indices: 20084727--20084915 Score: 57
Period size: 10 Copynumber: 20.0 Consensus size: 9
20084717 ACATGTAGCA
*
20084727 AAAAATAAT
1 AAAAATTAT
*
20084736 AAAAA-AAT
1 AAAAATTAT
*
20084744 AAAAATCAAT
1 AAAAAT-TAT
*
20084754 AAAAGTTAT
1 AAAAATTAT
*
20084763 -AAATTTAT
1 AAAAATTAT
* *
20084771 TAAATTTAAAT
1 AAAAATT--AT
20084782 AAAAA-TAT
1 AAAAATTAT
20084790 AAAAATATATTT
1 AAAAAT-TA--T
**
20084802 AAATTTTATT
1 AAAAATTA-T
*
20084812 AAAAATTAAA
1 AAAAATT-AT
*
20084822 AAAAACTAT
1 AAAAATTAT
20084831 AAAAATCGTA-
1 AAAAAT--TAT
*
20084841 AAAAATAAT
1 AAAAATTAT
*
20084850 AAAAATTGT
1 AAAAATTAT
*
20084859 AAAATTTTAT
1 AAAA-ATTAT
20084869 AAAAATCGT-T
1 AAAAAT--TAT
*
20084879 AAAAAATAT
1 AAAAATTAT
*
20084888 -AAAATATAGA
1 AAAAAT-TA-T
20084898 AAAAATTAT
1 AAAAATTAT
20084907 AAAAATTAT
1 AAAAATTAT
20084916 CGTACAAAAA
Statistics
Matches: 137, Mismatches: 23, Indels: 40
0.69 0.12 0.20
Matches are distributed among these distances:
8 28 0.20
9 43 0.31
10 45 0.33
11 16 0.12
12 5 0.04
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:20085131 original size:19 final size:20
Alignment explanation
Indices: 20085107--20085187 Score: 89
Period size: 20 Copynumber: 4.1 Consensus size: 20
20085097 AATTTCTTTA
20085107 ATAATTTTT-TTATAATTTT
1 ATAATTTTTATTATAATTTT
*
20085126 ATAATTTTTTATTATTATTTT
1 ATAA-TTTTTATTATAATTTT
*
20085147 -TATATTTTTATTAAAATTTT
1 ATA-ATTTTTATTATAATTTT
20085167 AT-ATTTTT-TTATAACTTTT
1 ATAATTTTTATTATAA-TTTT
20085186 AT
1 AT
20085188 TGATTTCTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.09
19 16 0.30
20 21 0.40
21 11 0.21
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (20 bp):
ATAATTTTTATTATAATTTT
Found at i:20085137 original size:41 final size:41
Alignment explanation
Indices: 20085091--20085180 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 41
20085081 TTTTTATGCA
*
20085091 TTTTATAATT-TCTTTAATAATTTTT-TTATAATTTTATAATT
1 TTTTATAATTAT-TTTAAT-ATTTTTATTAAAATTTTATAATT
* * *
20085132 TTTTATTATTATTTTTATATTTTTATTAAAATTTTATATTT
1 TTTTATAATTATTTTAATATTTTTATTAAAATTTTATAATT
20085173 TTTTATAA
1 TTTTATAA
20085181 CTTTTATTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
40 6 0.14
41 35 0.83
42 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (41 bp):
TTTTATAATTATTTTAATATTTTTATTAAAATTTTATAATT
Found at i:20085149 original size:30 final size:29
Alignment explanation
Indices: 20085080--20085187 Score: 110
Period size: 30 Copynumber: 3.6 Consensus size: 29
20085070 TTAAAGGACA
* *
20085080 TTTTTTATGCATTTTATAATTTCTTTAATAAT
1 TTTTTTAT-AATTTTATAATTT-TTT-ATTAT
20085112 TTTTTTATAATTTTATAATTTTTTATTAT
1 TTTTTTATAATTTTATAATTTTTTATTAT
* **
20085141 TATTTTTATATTTTTATTAAAATTTTA-TAT
1 T-TTTTTATAATTTTA-TAATTTTTTATTAT
20085171 TTTTTTATAACTTTTAT
1 TTTTTTATAA-TTTTAT
20085188 TGATTTCTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
29 14 0.21
30 25 0.37
31 20 0.30
32 8 0.12
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.68
Consensus pattern (29 bp):
TTTTTTATAATTTTATAATTTTTTATTAT
Found at i:20085689 original size:25 final size:25
Alignment explanation
Indices: 20085652--20085703 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
20085642 AGAAAGAAAA
*
20085652 TTTCAATCTGTGATTGAACATTTAC
1 TTTCAATCAGTGATTGAACATTTAC
20085677 TTTCAATCAGTGATTGAACATTTAC
1 TTTCAATCAGTGATTGAACATTTAC
20085702 TT
1 TT
20085704 ACTATTGTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (25 bp):
TTTCAATCAGTGATTGAACATTTAC
Found at i:20089578 original size:50 final size:50
Alignment explanation
Indices: 20089509--20089699 Score: 211
Period size: 50 Copynumber: 3.7 Consensus size: 50
20089499 TTTCTTGTAC
* * **
20089509 TGCCAATGCCATATCCCAGATATGGTCTTACATGGAAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATATCGG
* *** *
20089559 TGCCCATGCCATGTCCCAGACATGGTCTTATGGGGAACCTCTCATTTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATATCGG
* * * *
20089609 TGCCAATGCCATGTCCCAAAAATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCAT-A--TC---GG
20089665 TGCCAATGCCATGTCCCAGACATGGTCTTACATGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGG
20089700 GAAATCTAAC
Statistics
Matches: 115, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 79 0.69
53 2 0.02
56 34 0.30
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATATCGG
Found at i:20089639 original size:100 final size:103
Alignment explanation
Indices: 20089509--20089694 Score: 252
Period size: 100 Copynumber: 1.8 Consensus size: 103
20089499 TTTCTTGTAC
* * ** * *
20089509 TGCCAATGCCATATCCCAGATATGGTCTTACATGGAAGTTCTCAT-A-TC-GGTGCCCATGCCAT
1 TGCCAATGCCATATCCCAAAAATGGTCTTACATGGAACCTCTCATAACTCAGATGCCAATGCCAT
20089571 GTCCCAGACATGGTCTTATGGGGAACCTCTCATTTCGG
66 GTCCCAGACATGGTCTTATGGGGAACCTCTCATTTCGG
* *
20089609 TGCCAATGCCATGTCCCAAAAATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 TGCCAATGCCATATCCCAAAAATGGTCTTACATGGAACCTCTCATAA-CTC-A-GATGCCAATGC
20089674 CATGTCCCAGACATGGTCTTA
63 CATGTCCCAGACATGGTCTTA
20089695 CATGGGAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
100 39 0.54
101 1 0.01
103 2 0.03
106 30 0.42
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (103 bp):
TGCCAATGCCATATCCCAAAAATGGTCTTACATGGAACCTCTCATAACTCAGATGCCAATGCCAT
GTCCCAGACATGGTCTTATGGGGAACCTCTCATTTCGG
Found at i:20092686 original size:160 final size:160
Alignment explanation
Indices: 20092411--20092752 Score: 526
Period size: 160 Copynumber: 2.1 Consensus size: 160
20092401 TCTCAATAAT
*
20092411 TCCATTATTATTTATAGTGCATTCAAAGCTGTCTCACTGAGTCATAGTCACTAAATTATTTATAT
1 TCCA-TATTATTTATAGTTCATTCAAAGCTGTCTCACTGAGTCATAGTCACTAAATTATTTATAT
* * ** * *
20092476 CTTGAGTTACGGAACTCCAAATTAAGATCTGCTAATTTTCCCCAAAACTAGACTCATATATCTTC
65 CTTGAGCTACGAAACTCCAAATTAAGATCTAATAATTTTACCCAAAACTAGACTCACATATCTTC
20092541 TTACCATAAAATTTTCAAAATTTTTGGTTTA
130 TTACCATAAAATTTTCAAAATTTTTGGTTTA
* *
20092572 TCCATATTATTTATAGTTCATTCAAAGTTGTCTCATTGAGTCATAGTCACTAAATTATTTATATC
1 TCCATATTATTTATAGTTCATTCAAAGCTGTCTCACTGAGTCATAGTCACTAAATTATTTATATC
* *
20092637 TTGAGCTACGAAACTCCAAATTAAGATCTAATAATTTTACCCGAAACTAGATTCACATATCTTCT
66 TTGAGCTACGAAACTCCAAATTAAGATCTAATAATTTTACCCAAAACTAGACTCACATATCTTCT
*
20092702 TACCATAAAATTTTCAGAATTTTTGGTTTA
131 TACCATAAAATTTTCAAAATTTTTGGTTTA
* * *
20092732 GCCA-ATTA-GTATAGTTTATTC
1 TCCATATTATTTATAGTTCATTC
20092753 TTTAAAGTTT
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
158 11 0.07
159 4 0.02
160 147 0.89
161 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.40
Consensus pattern (160 bp):
TCCATATTATTTATAGTTCATTCAAAGCTGTCTCACTGAGTCATAGTCACTAAATTATTTATATC
TTGAGCTACGAAACTCCAAATTAAGATCTAATAATTTTACCCAAAACTAGACTCACATATCTTCT
TACCATAAAATTTTCAAAATTTTTGGTTTA
Found at i:20105401 original size:14 final size:15
Alignment explanation
Indices: 20105367--20105401 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
20105357 TCTAGTAACT
20105367 TTTACACCCTTTTCAA
1 TTTA-ACCCTTTTCAA
20105383 TTTAACCCTTTTC-A
1 TTTAACCCTTTTCAA
20105397 TTTAA
1 TTTAA
20105402 TTGACTACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 9 0.47
16 4 0.21
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTAACCCTTTTCAA
Found at i:20111666 original size:50 final size:50
Alignment explanation
Indices: 20111554--20111669 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 50
20111544 TTTTGTACTA
* * * **
20111554 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGGTG
* ** *
20111604 CTC-ATGCTATGTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGGTG
1 C-CAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGGTG
*
20111654 CCAACGCCATGTCCCA
1 CCAATGCCATGTCCCA
20111670 NNNNNNNNNN
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
49 1 0.02
50 51 0.96
51 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGGTG
Found at i:20113023 original size:5 final size:5
Alignment explanation
Indices: 20113013--20113044 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
20113003 CCATAGTCAA
20113013 AATTT AATTT AATTT AATTT AATTT AATTT AA
1 AATTT AATTT AATTT AATTT AATTT AATTT AA
20113045 CTTACCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
AATTT
Found at i:20115001 original size:14 final size:14
Alignment explanation
Indices: 20114982--20115012 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20114972 ATCTCAATTT
20114982 CATACACACACACA
1 CATACACACACACA
*
20114996 CATACACACACATA
1 CATACACACACACA
20115010 CAT
1 CAT
20115013 TCAACACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.13
Consensus pattern (14 bp):
CATACACACACACA
Found at i:20124466 original size:46 final size:46
Alignment explanation
Indices: 20124335--20124469 Score: 116
Period size: 45 Copynumber: 2.9 Consensus size: 46
20124325 GATAGGATTA
* * * *
20124335 GTTTCTTCAATCTGCTTCGCTGCCAATATAGGAAGGCAAGATCTACT
1 GTTT-TTCGATCTGCTTCACTGCCAATACAGGAAGGTAAGATCTACT
* * * * **
20124382 GTTTTTAG-TCTGCTCCACTG-CAA-ACTTAGGGAGATAAGAT-TTGT
1 GTTTTTCGATCTGCTTCACTGCCAATAC--AGGAAGGTAAGATCTACT
20124426 GGTTTTTCGATCTGCTTCACTGCCAATACAGGAAGGTAAGATCT
1 -GTTTTTCGATCTGCTTCACTGCCAATACAGGAAGGTAAGATCT
20124470 GTTATTTTCA
Statistics
Matches: 67, Mismatches: 14, Indels: 14
0.71 0.15 0.15
Matches are distributed among these distances:
43 1 0.01
44 5 0.07
45 27 0.40
46 24 0.36
47 8 0.12
48 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (46 bp):
GTTTTTCGATCTGCTTCACTGCCAATACAGGAAGGTAAGATCTACT
Found at i:20124656 original size:89 final size:89
Alignment explanation
Indices: 20124431--20125398 Score: 1268
Period size: 89 Copynumber: 10.9 Consensus size: 89
20124421 TTTGTGGTTT
* * ** *
20124431 TTCGATCTGCTTCACTGCCAATACAGGAAGGTAAGATCTGTTATTTTCAACCTACTCCACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
***
20124496 CTCAGGGAGATAAGGC-TGGGGTC
66 CTCAGGGAGATAAGGCTTGCTATC
* * * * *
20124519 TTCGATCTACTTCACTGCCAATATAGGAAGACAAGATCTGCTACTTTCAACCCACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* *
20124584 CTCAGGGAGATAAGACTTCCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
* * * * *
20124608 TTCAATCTACTTCGCTGCTAATACAGAAAGACAAGATCTGCTATTTTCAAACTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * * *** *
20124673 CTCAAGGAAATAA-GTTTGGGGTT
66 CTCAGGGAGATAAGGCTTGCTATC
* *
20124696 TTCGATTTACTTC-CATACCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCT
1 TTCGATCTACTTCGC-TGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCT
*
20124760 GCTCAGGGAGATAAGGCTGGCTATC
65 GCTCAGGGAGATAAGGCTTGCTATC
* * *
20124785 TTCGATCTACTTCACTGCCAATACAGGAAAACAATATCTGTTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
*
20124850 CTCAGGGACATAAGGCTTGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
** *
20124874 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
*
20124939 CTCAGGGAGATAAGGCTAGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
*
20124963 TTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* *
20125028 CTTAGGGAGATAAGGCTGGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
* * * * *
20125052 TTTGATCTACTTTGCTGCCAATACAGGAAGACAAGATATGCTATTTTCAACCTACTCCACTGTTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * ***
20125117 TTCAGGGACG-TAA-GTTTGGGGTC
66 CTCAGGGA-GATAAGGCTTGCTATC
* * *
20125140 TTCGATCTACTTCGCTGCCAATACAGGAAAACAAGATCTGTTATTTTTAACCTACTACACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* *
20125205 CTCAAGGAGATAAGGCTAGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
20125229 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* ***
20125294 TTCAGGTG-GATAAGGC-TGGGGTC
66 CTCAGG-GAGATAAGGCTTGCTATC
* * ** *
20125317 -TCGATTTACTTCGATGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCTACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
20125381 CTCAGGGAGATAAGGCTT
66 CTCAGGGAGATAAGGCTT
20125399 TAAGGTTTCA
Statistics
Matches: 762, Mismatches: 108, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
86 1 0.00
87 74 0.10
88 217 0.28
89 467 0.61
90 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (89 bp):
TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
CTCAGGGAGATAAGGCTTGCTATC
Found at i:20124667 original size:177 final size:177
Alignment explanation
Indices: 20124431--20125397 Score: 1239
Period size: 177 Copynumber: 5.5 Consensus size: 177
20124421 TTTGTGGTTT
* * * ** *
20124431 TTCGATCTGCTTCACTGCCAATACAGGAAGGTAAGATCTGTTATTTTCAACCTACTCCACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
** * *
20124496 CTCAGGGAGATAAGGCTGGGGTCTTCGATCTACTTCACTGCCAATATAGGAAGACAAGATCTGCT
66 CTCAGGGAGATAAGGCTGGTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
20124561 ACTTTCAACCCACTCCACTGCTGCTCAGGGAGATAAGACTTCCTATC
131 ATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
* * * *
20124608 TTCAATCTACTTCGCTGCTAATACAGAAAGACAAGATCTGCTATTTTCAAACTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * ** ** * * * *
20124673 CTCAAGGAAATAAGTTTGGGGTTTTCGATTTACTTC-CATACCAATACAGGAAGACAAGATCTGT
66 CTCAGGGAGATAAGGCTGGTATCTTCGATCTACTTCGC-TGCCAATACAGGAAGACAAGATCTGC
*
20124737 TATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGCTATC
130 TATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
* *
20124785 TTCGATCTACTTCACTGCCAATACAGGAAA-ACAATATCTGTTATTTTCAACCTACTCCACTGCT
1 TTCGATCTACTTCGCTGCCAATACA-GAAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCT
* * *
20124849 GCTCAGGGACATAAGGCTTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTA
65 GCTCAGGGAGATAAGGC-TGGTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTG
* *
20124914 CTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTAGCTATC
129 CTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
* *
20124963 TTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * * *
20125028 CTTAGGGAGATAAGGCTGGCTATCTTTGATCTACTTTGCTGCCAATACAGGAAGACAAGATATGC
66 CTCAGGGAGATAAGGCTGG-TATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGC
* * * ***
20125093 TATTTTCAACCTACTCCACTGTTGTTCAGGGACG-TAA-GTTTGGGGTC
130 TATTTTCAACCTACTCCACTGCTGCTCAGGGA-GATAAGGCTTGCTATC
* *
20125140 TTCGATCTACTTCGCTGCCAATACAGGAAA-ACAAGATCTGTTATTTTTAACCTACTACACTGCT
1 TTCGATCTACTTCGCTGCCAATACA-GAAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCT
* *
20125204 GCTCAAGGAGATAAGGCTAGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTG
65 GCTCAGGGAGATAAGGCT-GGTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTG
* * ***
20125269 TTATTTTCAACCTACTCCACTGCTGTTCAGGTG-GATAAGGC-TGGGGTC
129 CTATTTTCAACCTACTCCACTGCTGCTCAGG-GAGATAAGGCTTGCTATC
* * * ** *
20125317 -TCGATTTACTTCGATGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCTACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
20125381 CTCAGGGAGATAAGGCT
66 CTCAGGGAGATAAGGCT
20125398 TTAAGGTTTC
Statistics
Matches: 692, Mismatches: 85, Indels: 27
0.86 0.11 0.03
Matches are distributed among these distances:
175 3 0.00
176 70 0.10
177 379 0.55
178 238 0.34
179 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (177 bp):
TTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
CTCAGGGAGATAAGGCTGGTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
ATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
Found at i:20124888 original size:266 final size:266
Alignment explanation
Indices: 20124431--20125398 Score: 1340
Period size: 266 Copynumber: 3.6 Consensus size: 266
20124421 TTTGTGGTTT
* * ** *
20124431 TTCGATCTGCTTCACTGCCAATACAGGAAGGTAAGATCTGTTATTTTCAACCTACTCCACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* *
20124496 CTCAGGGAGATAAGGCTGGGGTCTTCGATCTACTTCACTGCCAATATAGGAAGACAAGATCTGCT
66 CTCAGGGAGATAAGGCTGGGATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCT
* * * * * *
20124561 ACTTTCAACCCACTCCACTGCTGCTCAGGGAGATAAGACTTCCTATCTTCAATCTACTTCGCTGC
131 ATTTTCAACCTACTCCACTGCTGCTCAGGGACATAAGGCTTGCTATCTTCGATCTACTTCGCTGC
* * * **
20124626 TAATACAGAAAGACAAGATCTGCTATTTTCAAACTACTCCACTGCTGCTCAAGGAAATAAGTTTG
196 CAATACAGAAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCT-
* *
20124691 GGGT-T-
260 AGCTATC
* *
20124696 TTCGATTTACTTC-CATACCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCT
1 TTCGATCTACTTCGC-TGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCT
* * *
20124760 GCTCAGGGAGATAAGGCTGGCTATCTTCGATCTACTTCACTGCCAATACAGGAAAACAATATCTG
65 GCTCAGGGAGATAAGGCTGG-GATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTG
*
20124825 TTATTTTCAACCTACTCCACTGCTGCTCAGGGACATAAGGCTTGCTATCTTCGATCTACTTCGCT
129 CTATTTTCAACCTACTCCACTGCTGCTCAGGGACATAAGGCTTGCTATCTTCGATCTACTTCGCT
* * * *
20124890 GCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGC
194 GCCAATACAGAAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGC
20124955 TAGCTATC
259 TAGCTATC
*
20124963 TTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * * ** *
20125028 CTTAGGGAGATAAGGCTGGCTATCTTTGATCTACTTTGCTGCCAATACAGGAAGACAAGATATGC
66 CTCAGGGAGATAAGGCTGG-GATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* * * * ***
20125093 TATTTTCAACCTACTCCACTGTTGTTCAGGGACGTAA-GTTTGGGGTCTTCGATCTACTTCGCTG
130 TATTTTCAACCTACTCCACTGCTGCTCAGGGACATAAGGCTTGCTATCTTCGATCTACTTCGCTG
* * *
20125157 CCAATACAGGAAA-ACAAGATCTGTTATTTTTAACCTACTACACTGCTGCTCAAGGAGATAAGGC
195 CCAATACA-GAAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGC
20125221 TAGCTATC
259 TAGCTATC
20125229 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * * *
20125294 TTCAGGTG-GATAAGGCTGGGGTC-TCGATTTACTTCGA-TGCCAATACAGGAAGACAAGATCTA
66 CTCAGG-GAGATAAGGCTGGGATCTTCGATCTACTTC-ACTGCCAATACAGGAAGACAAGATCTG
* *
20125356 CTATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTT
129 CTATTTTCAACCTACTCCACTGCTGCTCAGGGACATAAGGCTT
20125399 TAAGGTTTCA
Statistics
Matches: 623, Mismatches: 71, Indels: 18
0.88 0.10 0.03
Matches are distributed among these distances:
264 66 0.11
265 83 0.13
266 318 0.51
267 155 0.25
268 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (266 bp):
TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
CTCAGGGAGATAAGGCTGGGATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCT
ATTTTCAACCTACTCCACTGCTGCTCAGGGACATAAGGCTTGCTATCTTCGATCTACTTCGCTGC
CAATACAGAAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTA
GCTATC
Found at i:20126299 original size:26 final size:26
Alignment explanation
Indices: 20126270--20126320 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20126260 AGTATCTTGA
*
20126270 AAAGAACAAAGTATTCCAAGAACAGG
1 AAAGAACAAAGTACTCCAAGAACAGG
* *
20126296 AAAGAATAATGTACTCCAAGAACAG
1 AAAGAACAAAGTACTCCAAGAACAG
20126321 CAAGTAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.53, C:0.16, G:0.18, T:0.14
Consensus pattern (26 bp):
AAAGAACAAAGTACTCCAAGAACAGG
Found at i:20130260 original size:12 final size:12
Alignment explanation
Indices: 20130245--20130270 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20130235 AGAAAATCCA
20130245 AAAGAATAAAAG
1 AAAGAATAAAAG
20130257 AAAGAATAAAAG
1 AAAGAATAAAAG
20130269 AA
1 AA
20130271 TATTGACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAGAATAAAAG
Found at i:20140348 original size:61 final size:61
Alignment explanation
Indices: 20140283--20140470 Score: 179
Period size: 61 Copynumber: 3.1 Consensus size: 61
20140273 AATTAAAAAT
* *
20140283 ATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGA
1 ATTTTATAGTATCATATATTATGATTTAAGTAAATTTATATAAGAATATTTATTATTAAGA
* * * * * * * * * *
20140344 ATTTTATTA-AATTATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-T
1 ATTTTA-TAGTATCATATATTATGATTTAAGTAAATTTATATAAGAA-TATTT-ATTATTAAGA
* * *
20140403 CTTTTATAGTATCATATATTATGATTTGAGTAAATTTATATAAGAATATTAATTATTAAGA
1 ATTTTATAGTATCATATATTATGATTTAAGTAAATTTATATAAGAATATTTATTATTAAGA
20140464 ATTTTAT
1 ATTTTAT
20140471 TAAATTAATA
Statistics
Matches: 93, Mismatches: 26, Indels: 16
0.69 0.19 0.12
Matches are distributed among these distances:
58 3 0.03
59 33 0.35
60 14 0.15
61 40 0.43
62 3 0.03
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (61 bp):
ATTTTATAGTATCATATATTATGATTTAAGTAAATTTATATAAGAATATTTATTATTAAGA
Found at i:20140351 original size:15 final size:16
Alignment explanation
Indices: 20140323--20140352 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
20140313 TAAATTCATA
20140323 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
20140339 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
20140353 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:20140372 original size:18 final size:17
Alignment explanation
Indices: 20140344--20140378 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
20140334 ATTATTAAGA
*
20140344 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
20140361 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
20140379 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:20140437 original size:120 final size:119
Alignment explanation
Indices: 20140284--20140511 Score: 420
Period size: 120 Copynumber: 1.9 Consensus size: 119
20140274 ATTAAAAATA
* *
20140284 TTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
20140349 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATC
66 ATTAAATTA-ATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATC
*
20140404 TTTTATAGTATCATATATTATGATTTGAGTAAATTTATATAAGAATATTAATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
20140469 ATTAAATTAATATTTTAATTAAAATATATTTAATAATAATTAT
66 ATTAAATTAATATTTTAATTAAAATATATTTAATAATAATTAT
20140512 GTTAAAATAT
Statistics
Matches: 105, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
119 34 0.32
120 71 0.68
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (119 bp):
TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
ATTAAATTAATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATC
Found at i:20140689 original size:39 final size:43
Alignment explanation
Indices: 20140644--20140745 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 43
20140634 TTTCCTTTTG
*
20140644 CTATTACACCTCTATTC-T-ATTCAACCAAACACAAGAA-TA-
1 CTATTACACCTCTATTCATCATTCAACCAAACAAAAGAATTAC
**
20140683 CTATTACGTCTCTATTCCATTCCATTCAACCAAACAAAAGAATTAC
1 CTATTACACCTCTATT-CA-T-CATTCAACCAAACAAAAGAATTAC
20140729 CTATTACACCTCTATTC
1 CTATTACACCTCTATTC
20140746 CATTACGCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
39 14 0.27
40 1 0.02
42 1 0.02
44 18 0.35
45 3 0.06
46 14 0.27
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.31
Consensus pattern (43 bp):
CTATTACACCTCTATTCATCATTCAACCAAACAAAAGAATTAC
Found at i:20140712 original size:44 final size:46
Alignment explanation
Indices: 20140657--20140749 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 46
20140647 TTACACCTCT
* * **
20140657 ATTCTATTCAACCAAACACAAGAA-TA-CTATTACGTCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTATTACACCTCTATTCC
20140701 ATTCCATTCAACCAAACAAAAGAATTACCTATTACACCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTATTACACCTCTATTCC
20140747 ATT
1 ATT
20140750 ACGCATCTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 22 0.51
45 2 0.05
46 19 0.44
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.31
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACCTATTACACCTCTATTCC
Found at i:20140758 original size:16 final size:16
Alignment explanation
Indices: 20140731--20140816 Score: 129
Period size: 16 Copynumber: 5.4 Consensus size: 16
20140721 AGAATTACCT
*
20140731 ATTACACCTCTATTCC
1 ATTACATCTCTATTCC
*
20140747 ATTAC-GCATCTATTCC
1 ATTACATC-TCTATTCC
20140763 ATTACATCTCTATTCC
1 ATTACATCTCTATTCC
20140779 ATTACATCTCTATTCC
1 ATTACATCTCTATTCC
*
20140795 ATTACACCTCTATTCC
1 ATTACATCTCTATTCC
20140811 ATTACA
1 ATTACA
20140817 GCGAACCAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
15 1 0.02
16 63 0.97
17 1 0.02
ACGTcount: A:0.27, C:0.33, G:0.01, T:0.40
Consensus pattern (16 bp):
ATTACATCTCTATTCC
Found at i:20140767 original size:32 final size:32
Alignment explanation
Indices: 20140731--20140818 Score: 142
Period size: 32 Copynumber: 2.8 Consensus size: 32
20140721 AGAATTACCT
20140731 ATTACACCTCTATTCCATTAC-GCATCTATTCC
1 ATTACACCTCTATTCCATTACAGC-TCTATTCC
* *
20140763 ATTACATCTCTATTCCATTACATCTCTATTCC
1 ATTACACCTCTATTCCATTACAGCTCTATTCC
20140795 ATTACACCTCTATTCCATTACAGC
1 ATTACACCTCTATTCCATTACAGC
20140819 GAACCAAACG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 50 0.98
33 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.02, T:0.39
Consensus pattern (32 bp):
ATTACACCTCTATTCCATTACAGCTCTATTCC
Found at i:20142030 original size:19 final size:20
Alignment explanation
Indices: 20141995--20142035 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
20141985 ACATACGTAT
20141995 AATAAATAACAAGT-AAATG
1 AATAAATAACAAGTAAAATG
*
20142014 AATAAATAA-TAGATAAAATG
1 AATAAATAACAAG-TAAAATG
20142034 AA
1 AA
20142036 ATAATAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 2 0.11
19 10 0.53
20 7 0.37
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (20 bp):
AATAAATAACAAGTAAAATG
Found at i:20143652 original size:18 final size:18
Alignment explanation
Indices: 20143618--20143659 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
20143608 TTAACTTTTA
*
20143618 TTTTTGTTTTGTTGTTTG
1 TTTTTGTTTTATTGTTTG
20143636 TTTTT-TTTTATTAGTTTG
1 TTTTTGTTTTATT-GTTTG
*
20143654 TGTTTG
1 TTTTTG
20143660 GTTTCTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.05, C:0.00, G:0.19, T:0.76
Consensus pattern (18 bp):
TTTTTGTTTTATTGTTTG
Found at i:20146108 original size:25 final size:26
Alignment explanation
Indices: 20146062--20146111 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
20146052 AATACACGGG
*
20146062 ATATAAATTGCTCATACAAGCTGTGA
1 ATATAAATTGCTCACACAAGCTGTGA
**
20146088 ATAT-AATTGCTCACATGAGCTGTG
1 ATATAAATTGCTCACACAAGCTGTG
20146112 GGTCAGGATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (26 bp):
ATATAAATTGCTCACACAAGCTGTGA
Found at i:20148095 original size:17 final size:17
Alignment explanation
Indices: 20148075--20148119 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
20148065 AGATTAGTGG
*
20148075 CATTGTAAGAACATTTA
1 CATTGTGAGAACATTTA
*
20148092 CATTGTGAGAACGTTTA
1 CATTGTGAGAACATTTA
20148109 CATTGTGAGAA
1 CATTGTGAGAA
20148120 AGACAACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (17 bp):
CATTGTGAGAACATTTA
Found at i:20149645 original size:37 final size:39
Alignment explanation
Indices: 20149603--20149701 Score: 111
Period size: 37 Copynumber: 2.6 Consensus size: 39
20149593 ATATTATTTT
20149603 AATAGTTTAATATTAGATTTAAT-TT-AA-TGATTATCTC
1 AATAGTTTAATATTA-ATTTAATATTAAAGTGATTATCTC
* * *
20149640 AATAGTATT-TTATTAATTTAATATTAAAGTGATTATTTT
1 AATAGT-TTAATATTAATTTAATATTAAAGTGATTATCTC
20149679 AATA-TTTAAT-TTAATTTAATATT
1 AATAGTTTAATATTAATTTAATATT
20149702 TATCTTGTAG
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
36 7 0.13
37 28 0.53
38 6 0.11
39 12 0.23
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (39 bp):
AATAGTTTAATATTAATTTAATATTAAAGTGATTATCTC
Found at i:20149764 original size:12 final size:12
Alignment explanation
Indices: 20149732--20149765 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
20149722 TATTATTTTA
20149732 ATAATATTTAAT
1 ATAATATTTAAT
20149744 ATTAA-ATTTAAT
1 A-TAATATTTAAT
20149756 ATAATATTTA
1 ATAATATTTA
20149766 TCTTGATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.15
12 14 0.70
13 3 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATAATATTTAAT
Found at i:20151918 original size:37 final size:39
Alignment explanation
Indices: 20151876--20151974 Score: 111
Period size: 37 Copynumber: 2.6 Consensus size: 39
20151866 ATATTATTTT
20151876 AATAGTTTAATATTAGATTTAAT-TT-AA-TGATTATCTC
1 AATAGTTTAATATTA-ATTTAATATTAAAGTGATTATCTC
* * *
20151913 AATAGTATT-TTATTAATTTAATATTAAAGTGATTATTTT
1 AATAGT-TTAATATTAATTTAATATTAAAGTGATTATCTC
20151952 AATA-TTTAAT-TTAATTTAATATT
1 AATAGTTTAATATTAATTTAATATT
20151975 TATCTTGTAG
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
36 7 0.13
37 28 0.53
38 6 0.11
39 12 0.23
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (39 bp):
AATAGTTTAATATTAATTTAATATTAAAGTGATTATCTC
Found at i:20152037 original size:12 final size:12
Alignment explanation
Indices: 20152005--20152038 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
20151995 TATTATTTTA
20152005 ATAATATTTAAT
1 ATAATATTTAAT
20152017 ATTAA-ATTTAAT
1 A-TAATATTTAAT
20152029 ATAATATTTA
1 ATAATATTTA
20152039 TCTTGATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.15
12 14 0.70
13 3 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATAATATTTAAT
Found at i:20158157 original size:67 final size:67
Alignment explanation
Indices: 20158032--20158159 Score: 168
Period size: 67 Copynumber: 1.9 Consensus size: 67
20158022 CTATTGCCCA
* * ** * *
20158032 AGTAGTCATCCTAGAATGGTGAGCTTACAAGTGACCTCCCTCCTTTCTGGTGGCAGGCTTACTAT
1 AGTAGTCATCCGAGAATGGTAAGCTTACAAGTGACCTCCCAACTTGCTAGTGGCAGGCTTACTAT
20158097 TT
66 TT
* *
20158099 AGTAGTCATCCCGA-AATGGTAAGCTTACAGGTGACCTCCCAACTTGCTAGTGGTAGGCTTA
1 AGTAGTCAT-CCGAGAATGGTAAGCTTACAAGTGACCTCCCAACTTGCTAGTGGCAGGCTTA
20158160 TTGTTCAAGC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
67 49 0.94
68 3 0.06
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (67 bp):
AGTAGTCATCCGAGAATGGTAAGCTTACAAGTGACCTCCCAACTTGCTAGTGGCAGGCTTACTAT
TT
Found at i:20158475 original size:7 final size:7
Alignment explanation
Indices: 20158463--20158489 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
20158453 AGGAATATCA
20158463 TTTATTG
1 TTTATTG
20158470 TTTATTG
1 TTTATTG
20158477 TTTATTG
1 TTTATTG
20158484 TTTATT
1 TTTATT
20158490 TTTCTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.11, T:0.74
Consensus pattern (7 bp):
TTTATTG
Found at i:20160588 original size:58 final size:58
Alignment explanation
Indices: 20160515--20160649 Score: 243
Period size: 58 Copynumber: 2.3 Consensus size: 58
20160505 AAATCTCACC
*
20160515 GTCTACTCAATTCATTCAAAATGGAACAACTTAATTACAATTGATAAAATCTGACTTT
1 GTCTACTCAATTCATTCAAAATGGAACAACTTAATTACAATTGATAAAATCAGACTTT
* *
20160573 GTCTACTCAATTCATTCAAAATGGAACAACTTACTTACTATTGATAAAATCAGACTTT
1 GTCTACTCAATTCATTCAAAATGGAACAACTTAATTACAATTGATAAAATCAGACTTT
20160631 GTCTACTCAATTCATTCAA
1 GTCTACTCAATTCATTCAA
20160650 GATCCAATTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 74 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (58 bp):
GTCTACTCAATTCATTCAAAATGGAACAACTTAATTACAATTGATAAAATCAGACTTT
Found at i:20164158 original size:24 final size:24
Alignment explanation
Indices: 20164124--20164182 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
20164114 CTAGAACTAG
*
20164124 TGAAACA--CAAAGGTTTAGCGCT
1 TGAAACATTCAAAGCTTTAGCGCT
* *
20164146 T-AGAACATTCAAAGCTTTGGGGCT
1 TGA-AACATTCAAAGCTTTAGCGCT
20164170 TGAAACATTCAAA
1 TGAAACATTCAAA
20164183 ACTCTCGGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 5 0.17
24 23 0.77
25 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (24 bp):
TGAAACATTCAAAGCTTTAGCGCT
Found at i:20164192 original size:24 final size:24
Alignment explanation
Indices: 20164149--20164194 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
20164139 TAGCGCTTAG
* * *
20164149 AACATTCAAAGCTTTGGGGCTTGA
1 AACATTCAAAACTCTCGGGCTTGA
20164173 AACATTCAAAACTCTCGGGCTT
1 AACATTCAAAACTCTCGGGCTT
20164195 TCAGCATTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AACATTCAAAACTCTCGGGCTTGA
Found at i:20165361 original size:19 final size:19
Alignment explanation
Indices: 20165339--20165376 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
20165329 TAATTTAAAA
20165339 TTTTCAAAAATATATATAAT
1 TTTTCAAAAA-ATATATAAT
*
20165359 TTTTTAAAAAATATATAA
1 TTTTCAAAAAATATATAA
20165377 AAATTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTTCAAAAAATATATAAT
Found at i:20166143 original size:27 final size:27
Alignment explanation
Indices: 20166113--20166245 Score: 96
Period size: 27 Copynumber: 5.0 Consensus size: 27
20166103 TTTACGTATT
*
20166113 GGCGAACCT-CCCCGTATTTATTGTCCC
1 GGCGAA-CTACCCCGTATTTAGTGTCCC
* * *
20166140 GGCGGA-TA-CTCGTATTTAGTGTCCT
1 GGCGAACTACCCCGTATTTAGTGTCCC
* *
20166165 GG-AAACTACCCCGTGTTTAGTGTCCC
1 GGCGAACTACCCCGTATTTAGTGTCCC
* * *
20166191 GACGAACTACCCCGTGTTTATTGTCCC
1 GGCGAACTACCCCGTATTTAGTGTCCC
** * *
20166218 AAC-AGACTACCCCGTGTTTACTGTCCC
1 GGCGA-ACTACCCCGTATTTAGTGTCCC
20166245 G
1 G
20166246 ATGGACTACC
Statistics
Matches: 86, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.01
25 19 0.22
26 16 0.19
27 50 0.58
ACGTcount: A:0.18, C:0.32, G:0.21, T:0.29
Consensus pattern (27 bp):
GGCGAACTACCCCGTATTTAGTGTCCC
Found at i:20166184 original size:26 final size:26
Alignment explanation
Indices: 20166154--20166284 Score: 120
Period size: 27 Copynumber: 4.9 Consensus size: 26
20166144 GATACTCGTA
*
20166154 TTTAGTGTCCTGGA-AACTACCCCGTG
1 TTTAGTGTCC-CGACAACTACCCCGTG
20166180 TTTAGTGTCCCGACGAACTACCCCGTG
1 TTTAGTGTCCCGAC-AACTACCCCGTG
* *
20166207 TTTATTGTCCCAACAGACTACCCCGTG
1 TTTAGTGTCCCGACA-ACTACCCCGTG
* ** *
20166234 TTTACTGTCCCGATGGACTACCTCGTG
1 TTTAGTGTCCCGA-CAACTACCCCGTG
* * *
20166261 TTTAATGTCTCGACGGACTACCCC
1 TTTAGTGTCCCGAC-AACTACCCC
20166285 ATGTATAATA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.02
26 11 0.12
27 75 0.85
ACGTcount: A:0.19, C:0.31, G:0.20, T:0.30
Consensus pattern (26 bp):
TTTAGTGTCCCGACAACTACCCCGTG
Found at i:20166252 original size:27 final size:27
Alignment explanation
Indices: 20166169--20166293 Score: 151
Period size: 27 Copynumber: 4.6 Consensus size: 27
20166159 TGTCCTGGAA
* *
20166169 ACTACCCCGTGTTTAGTGTCCCGACGA
1 ACTACCCCGTGTTTAATGTCCCGACGG
* * *
20166196 ACTACCCCGTGTTTATTGTCCCAACAG
1 ACTACCCCGTGTTTAATGTCCCGACGG
* *
20166223 ACTACCCCGTGTTTACTGTCCCGATGG
1 ACTACCCCGTGTTTAATGTCCCGACGG
* *
20166250 ACTACCTCGTGTTTAATGTCTCGACGG
1 ACTACCCCGTGTTTAATGTCCCGACGG
* *
20166277 ACTACCCCATGTATAAT
1 ACTACCCCGTGTTTAAT
20166294 ATCTTAATGG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.30
Consensus pattern (27 bp):
ACTACCCCGTGTTTAATGTCCCGACGG
Found at i:20168780 original size:41 final size:40
Alignment explanation
Indices: 20168735--20168846 Score: 104
Period size: 40 Copynumber: 2.8 Consensus size: 40
20168725 AGCGGCATTT
20168735 TTAGCAGCG-TTTGGACAAAAAACGCCACTAGAA-ATCGAGCA
1 TTAGCAGCGCTTT--ACAAAAAACGCCACTA-AAGATCGAGCA
* ** *
20168776 TTAGCGGCGCTTTACGTAAAACGCCGCTAAAGATCGAGCA
1 TTAGCAGCGCTTTACAAAAAACGCCACTAAAGATCGAGCA
* * *
20168816 TTAGCGGCGCATTT-TAAAAAACGCCGCTAAA
1 TTAGCAGCGC-TTTACAAAAAACGCCACTAAA
20168847 AATAAGTATT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
39 2 0.03
40 45 0.74
41 11 0.18
42 3 0.05
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (40 bp):
TTAGCAGCGCTTTACAAAAAACGCCACTAAAGATCGAGCA
Found at i:20168837 original size:40 final size:37
Alignment explanation
Indices: 20168751--20168847 Score: 122
Period size: 40 Copynumber: 2.5 Consensus size: 37
20168741 GCGTTTGGAC
*
20168751 AAAAAACGCCACTAGAAATCGAGCATTAGCGGCGCTTT
1 AAAAAACGCCGCTA-AAATCGAGCATTAGCGGCGCTTT
*
20168789 ACGTAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCATTTT
1 A--AAAAACGCCGCTAAA-ATCGAGCATTAGCGGCGC--TTT
20168831 AAAAAACGCCGCTAAAA
1 AAAAAACGCCGCTAAAA
20168848 ATAAGTATTA
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
38 1 0.02
39 3 0.06
40 43 0.84
42 4 0.08
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.18
Consensus pattern (37 bp):
AAAAAACGCCGCTAAAATCGAGCATTAGCGGCGCTTT
Found at i:20169115 original size:82 final size:82
Alignment explanation
Indices: 20168944--20170976 Score: 3790
Period size: 82 Copynumber: 24.7 Consensus size: 82
20168934 CGCTTTTGAT
* * * * * *
20168944 AAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC-GTTTTTGAGAAA-GCACCGCTAATGC-TCGGG
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATG--CCGCTAATGCTTGGGG
*
20169006 CTTTAAC-GGCGTTTTTGAA
64 CTTT-ACTGGCGTTTTTAAA
*
20169025 GAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169090 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169107 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169172 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169189 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169254 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169271 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169336 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169353 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169418 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169435 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169500 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169517 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169582 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169599 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169664 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169681 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169746 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169763 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169828 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169845 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169910 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20169927 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20169992 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170009 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170074 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170091 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170156 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170173 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170238 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170255 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170320 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170337 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170402 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170419 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170484 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170501 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170566 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170583 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170648 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170665 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170730 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
20170747 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATACCGCTAATG
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAAT---GCT--TG
*
20170812 CTCGGGCTTTAAC-GGCGTTTTTGAA
61 ---GGGCTTT-ACTGGCGTTTTTAAA
*
20170837 GAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
20170902 TTACTGGCGTTTTTAAA
66 TTACTGGCGTTTTTAAA
* * *
20170919 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGC-GTTTTTGATAAAACGCCGCTAATGCT
1 AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCA-AAAATGCCGCTAATGCT
20170977 GGCCTTTAGC
Statistics
Matches: 1921, Mismatches: 16, Indels: 29
0.98 0.01 0.01
Matches are distributed among these distances:
81 49 0.03
82 1787 0.93
83 1 0.00
85 5 0.00
87 5 0.00
90 72 0.04
91 2 0.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (82 bp):
AAAGCGCCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATGCTTGGGGCT
TTACTGGCGTTTTTAAA
Found at i:20170846 original size:49 final size:50
Alignment explanation
Indices: 20170753--20170891 Score: 127
Period size: 40 Copynumber: 3.0 Consensus size: 50
20170743 TAAAAAAGCG
* * *
20170753 CCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAATA
1 CCGCTAATGCTCGTGCCTTTAACGGCAGTTTTTCAAAAACGCCGCTAATA
* * *
20170803 CCGCTAATGCTCG-GGCTTTAACGGC-GTTTTTGAAGAA-G-CG------
1 CCGCTAATGCTCGTGCCTTTAACGGCAGTTTTTCAAAAACGCCGCTAATA
* * *
20170843 CCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATGCCGCTAAT
1 CCGCTAATGCTCGTGCCTTTAACGGCAGTTTTTCAAAAACGCCGCTAAT
20170892 GCTTGGGGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
40 13 0.19
41 10 0.14
42 9 0.13
43 1 0.01
44 2 0.03
46 2 0.03
47 1 0.01
48 9 0.13
49 10 0.14
50 13 0.19
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (50 bp):
CCGCTAATGCTCGTGCCTTTAACGGCAGTTTTTCAAAAACGCCGCTAATA
Found at i:20170866 original size:90 final size:88
Alignment explanation
Indices: 20170712--20170973 Score: 369
Period size: 90 Copynumber: 3.0 Consensus size: 88
20170702 TTCAAAAATG
20170712 CCGCTAATGCTTGGGGCTTTACTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGTGCCTTTAGCG
1 CCGCTAATGC-T-GGGCTTTACTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGTGCCTTTAGCG
20170777 GCATTTTTTCAAAAATGCCGCTAAT
64 GCATTTTTTCAAAAATGCCGCTAAT
* *
20170802 ACCGCTAATGCTCGGGCTTTAAC-GGCGTTTTTGAAGAAGCGCCGCTAATGCTCGTGCCTTTAGC
1 -CCGCTAATGCT-GGGCTTT-ACTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGTGCCTTTAGC
20170866 GGCATTTTTTCAAAAATGCCGCTAAT
63 GGCATTTTTTCAAAAATGCCGCTAAT
20170892 --GCT--TG--GGGCTTTACTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGC
1 CCGCTAATGCTGGGCTTTACTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGC
* * *
20170951 -GTTTTTGATAAAACGCCGCTAAT
66 ATTTTTTCA-AAAATGCCGCTAAT
20170974 GCTGGCCTTT
Statistics
Matches: 160, Mismatches: 8, Indels: 15
0.87 0.04 0.08
Matches are distributed among these distances:
81 8 0.05
82 62 0.39
85 2 0.01
87 3 0.02
90 73 0.46
91 12 0.08
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (88 bp):
CCGCTAATGCTGGGCTTTACTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGTGCCTTTAGCGGC
ATTTTTTCAAAAATGCCGCTAAT
Found at i:20171003 original size:39 final size:41
Alignment explanation
Indices: 20170803--20171012 Score: 209
Period size: 41 Copynumber: 5.2 Consensus size: 41
20170793 GCCGCTAATA
* * * *
20170803 CCGCTAATGCTCG-GGCTTTAACGGCG-TTTTTGAAGAAGCG
1 CCGCTAATGCTCGTGCCTTTAGCGGCGCTTTTTCAA-AAACG
** *
20170843 CCGCTAATGCTCGTGCCTTTAGCGGCATTTTTTCAAAAATG
1 CCGCTAATGCTCGTGCCTTTAGCGGCGCTTTTTCAAAAACG
* * * *
20170884 CCGCTAATGCTTGGGGCTTTA-CTGGCG-TTTTTAAAAAAGCG
1 CCGCTAATGCTCGTGCCTTTAGC-GGCGCTTTTTCAAAAA-CG
*
20170925 CCGCTAATGCTCGTGCCTTTAGCGGCG-TTTTTGATAAAACG
1 CCGCTAATGCTCGTGCCTTTAGCGGCGCTTTTTCA-AAAACG
* *
20170966 CCGCTAATGCT-G-GCCTTTAGCAGCGCTTTATCAAAAACG
1 CCGCTAATGCTCGTGCCTTTAGCGGCGCTTTTTCAAAAACG
20171005 CCGCTAAT
1 CCGCTAAT
20171013 AATAAAATTT
Statistics
Matches: 144, Mismatches: 19, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 26 0.18
40 30 0.21
41 76 0.53
42 12 0.08
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (41 bp):
CCGCTAATGCTCGTGCCTTTAGCGGCGCTTTTTCAAAAACG
Found at i:20172549 original size:10 final size:10
Alignment explanation
Indices: 20172522--20172582 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
20172512 GTGATTTAAA
20172522 ATTTTAAAATG
1 ATTTTAAAA-G
20172533 AATTTTAAAAG
1 -ATTTTAAAAG
**
20172544 ATTTTAAATT
1 ATTTTAAAAG
* *
20172554 TTTTTAAAAA
1 ATTTTAAAAG
20172564 ATTTTAAAAAG
1 ATTTT-AAAAG
20172575 ATTTTAAA
1 ATTTTAAA
20172583 CTTTTATTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 22 0.54
11 10 0.24
12 9 0.22
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:20172577 original size:31 final size:31
Alignment explanation
Indices: 20172523--20172587 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
20172513 TGATTTAAAA
*
20172523 TTTTAAAATGAATTTTAAAAGATTTTAAATTT
1 TTTTAAAA-GAATTTTAAAAGATTTTAAACTT
20172555 TTTTAAAA-AATTTTAAAAAGATTTTAAACTT
1 TTTTAAAAGAATTTT-AAAAGATTTTAAACTT
20172586 TT
1 TT
20172588 ATTTTTATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 6 0.19
31 17 0.55
32 8 0.26
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (31 bp):
TTTTAAAAGAATTTTAAAAGATTTTAAACTT
Found at i:20177762 original size:43 final size:43
Alignment explanation
Indices: 20177713--20177936 Score: 304
Period size: 43 Copynumber: 5.2 Consensus size: 43
20177703 TATGTTTTTG
* **
20177713 GCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCGCAGTCTATA
1 GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATA
* * *
20177756 GCGGCGTTTCTGGGAAAAGCGCCGCTAAAAGTCGCGGTCTATA
1 GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATA
* *
20177799 GCGGCGTTTTTGGGAAAAGCGCCTCTAAAGGTCGTGGTCTATA
1 GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATA
* * *
20177842 GCGGCGTTTGTGGGAAAAGCACTGCTAAAGGTCGTGGTCTTTA
1 GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATA
* * * * *
20177885 GCGGCGTTTGTAGGAAAAGCACTGCTAAAGGTCTTGGTCTTTA
1 GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATA
20177928 GCGGCGTTT
1 GCGGCGTTT
20177937 TTTACGGCGC
Statistics
Matches: 166, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 166 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (43 bp):
GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATA
Found at i:20180677 original size:15 final size:15
Alignment explanation
Indices: 20180657--20180690 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
20180647 GATTGGAAAT
20180657 GATCCAAACAGAGAA
1 GATCCAAACAGAGAA
20180672 GATCCAAACAGAGAA
1 GATCCAAACAGAGAA
20180687 GATC
1 GATC
20180691 ATTTACGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.50, C:0.21, G:0.21, T:0.09
Consensus pattern (15 bp):
GATCCAAACAGAGAA
Found at i:20187605 original size:21 final size:21
Alignment explanation
Indices: 20187561--20187628 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
20187551 ATATGTTTTT
* *
20187561 AAAAAAAATAATTAA-ATATG
1 AAAAAAAATAATAAAGAAATG
20187581 AAAAAGAAATAATAAAGAAAT-
1 AAAAA-AAATAATAAAGAAATG
20187602 AAAAAAACA-AATAAAGAAAATG
1 AAAAAAA-ATAATAAAG-AAATG
20187624 AAAAA
1 AAAAA
20187629 GGACTAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
20 14 0.34
21 19 0.46
22 8 0.20
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.15
Consensus pattern (21 bp):
AAAAAAAATAATAAAGAAATG
Found at i:20188165 original size:19 final size:19
Alignment explanation
Indices: 20188136--20188194 Score: 100
Period size: 19 Copynumber: 3.1 Consensus size: 19
20188126 TACAAAATCA
*
20188136 CATATTCTAAGATTACATAT
1 CATA-TCTAAGATTGCATAT
20188156 CATATCTAAGATTGCATAT
1 CATATCTAAGATTGCATAT
20188175 CATATCTAAGATTGCATAT
1 CATATCTAAGATTGCATAT
20188194 C
1 C
20188195 CTCGAAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
19 34 0.89
20 4 0.11
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.37
Consensus pattern (19 bp):
CATATCTAAGATTGCATAT
Found at i:20188204 original size:17 final size:18
Alignment explanation
Indices: 20188144--20188204 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
20188134 CACATATTCT
* *
20188144 AAGATTACATATCATATCT
1 AAGATTGCATATCA-ATCG
*
20188163 AAGATTGCATATCATATCT
1 AAGATTGCATATCA-ATCG
*
20188182 AAGATTGCATATC-CTCG
1 AAGATTGCATATCAATCG
20188199 AAGATT
1 AAGATT
20188205 ATGTTTCCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
17 8 0.21
19 31 0.79
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (18 bp):
AAGATTGCATATCAATCG
Found at i:20188675 original size:44 final size:44
Alignment explanation
Indices: 20188623--20188729 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
20188613 TTCTGCTCTT
* * *
20188623 TGCAACTTCAGAGAGATAAGATCCA-AAGTTTTAATCTGCTTCAC
1 TGCAACTTCAGGGAGATAAGAT-CATAAGCTTTAATCTGCTCCAC
* * **
20188667 TGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATCATAAGCTTTAATCTGCTCCAC
*
20188711 TGCAACTTTAGGGAGATAA
1 TGCAACTTCAGGGAGATAA
20188730 AATTTTCCAT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 1 0.02
44 52 0.98
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATCATAAGCTTTAATCTGCTCCAC
Found at i:20189387 original size:44 final size:45
Alignment explanation
Indices: 20189317--20189599 Score: 199
Period size: 44 Copynumber: 6.4 Consensus size: 45
20189307 ACTGTCGGTG
* * *
20189317 TAGGAAGGCAAGACCTGCTATT-TTCGATCTACTTC-ACGCTAATA
1 TAGGAAGACAAGATCTGCT-TTCTTCGATCTACTTCGACGCCAATA
* * * * *
20189361 AATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTA
1 TAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGACGCCAATA
* * * * *
20189406 TGGGAAGACAAAATCTGC-ATCTTCGATCCACTTC--CTACCAATA
1 TAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGAC-GCCAATA
* * *
20189449 TAGGAAGACAGGACCTGCTATT-TTTGATCTACTTC-ACGCCAATA
1 TAGGAAGACAAGATCTGCT-TTCTTCGATCTACTTCGACGCCAATA
* * * * * *
20189493 CATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTA
1 TAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGACGCCAATA
* * * * *
20189538 TGGGAAGATAAGATCTGC-ATCTTCGATCCACTTC--CTACCAATA
1 TAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGAC-GCCAATA
* *
20189581 TAGGAAGACAGGACCTGCT
1 TAGGAAGACAAGATCTGCT
20189600 ATNNNNNNNN
Statistics
Matches: 187, Mismatches: 42, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
42 2 0.01
43 44 0.24
44 99 0.53
45 42 0.22
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (45 bp):
TAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGACGCCAATA
Found at i:20189456 original size:88 final size:89
Alignment explanation
Indices: 20189364--20189590 Score: 228
Period size: 88 Copynumber: 2.6 Consensus size: 89
20189354 GCTAATAAAT
* *
20189364 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAAATCTGC-ATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAAATCTGCTATCT
*
20189428 TCGATCCACTTC-CTACCAATATAG
65 TCGATCCACTTCGCCACCAATATAG
* * * * * * * * * *
20189452 GAAGACAGGACCTGCTATT-TTTGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCT
1 GAAGACAAGATCTGCT-TTCTTCGATCTACTTCCCACCAATATAGGAAGACAAAATCTGCTATCT
* * *
20189516 TCGATCTACTTCGCCACCAGTATGG
65 TCGATCCACTTCGCCACCAATATAG
* * * *
20189541 GAAGATAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGACA
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATAGGAAGACA
20189591 GGACCTGCTA
Statistics
Matches: 107, Mismatches: 28, Indels: 8
0.75 0.20 0.06
Matches are distributed among these distances:
87 20 0.19
88 64 0.60
89 23 0.21
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (89 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATAGGAAGACAAAATCTGCTATCTT
CGATCCACTTCGCCACCAATATAG
Found at i:20189554 original size:132 final size:132
Alignment explanation
Indices: 20189317--20189601 Score: 498
Period size: 132 Copynumber: 2.2 Consensus size: 132
20189307 ACTGTCGGTG
* * *
20189317 TAGGAAGGCAAGACCTGCTATTTTCGATCTACTTCACGCTAATAAATGAAGACAAGATCTGCTTT
1 TAGGAAGACAGGACCTGCTATTTTCGATCTACTTCACGCCAATAAATGAAGACAAGATCTGCTTT
20189382 CTTCGATCTACTTCGCCACCAGTATGGGAAGACAAAATCTGCATCTTCGATCCACTTCCTACCAA
66 CTTCGATCTACTTCGCCACCAGTATGGGAAGACAAAATCTGCATCTTCGATCCACTTCCTACCAA
20189447 TA
131 TA
* * *
20189449 TAGGAAGACAGGACCTGCTATTTTTGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTT
1 TAGGAAGACAGGACCTGCTATTTTCGATCTACTTCACGCCAATAAATGAAGACAAGATCTGCTTT
* *
20189514 CTTCGATCTACTTCGCCACCAGTATGGGAAGATAAGATCTGCATCTTCGATCCACTTCCTACCAA
66 CTTCGATCTACTTCGCCACCAGTATGGGAAGACAAAATCTGCATCTTCGATCCACTTCCTACCAA
20189579 TA
131 TA
20189581 TAGGAAGACAGGACCTGCTAT
1 TAGGAAGACAGGACCTGCTAT
20189602 NNNNNNNNNN
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 145 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
TAGGAAGACAGGACCTGCTATTTTCGATCTACTTCACGCCAATAAATGAAGACAAGATCTGCTTT
CTTCGATCTACTTCGCCACCAGTATGGGAAGACAAAATCTGCATCTTCGATCCACTTCCTACCAA
TA
Found at i:20190977 original size:6 final size:6
Alignment explanation
Indices: 20190968--20191001 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
20190958 TCCATTTTTA
20190968 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
20191002 ATCACTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:20190977 original size:12 final size:13
Alignment explanation
Indices: 20190962--20191001 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
20190952 GGCCTCTCCA
20190962 TTTT-TATTTTCT
1 TTTTCTATTTTCT
20190974 TTTTCT-TTTTCT
1 TTTTCTATTTTCT
20190986 TTTTCT-TTTTCT
1 TTTTCTATTTTCT
20190998 TTTT
1 TTTT
20191002 ATCACTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 26 0.96
13 1 0.04
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTCTATTTTCT
Done.