Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 66 of 141
Found at i:21551029 original size:14 final size:14
Alignment explanation
Indices: 21551010--21551060 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
21551000 TTAATATTTA
21551010 TGTAATTATAAGTT
1 TGTAATTATAAGTT
*
21551024 TGTAATTA-ATATTT
1 TGTAATTATA-AGTT
21551038 ATGTAATTATAAGTT
1 -TGTAATTATAAGTT
21551053 TGTAATTA
1 TGTAATTA
21551061 ATATTTATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 1 0.03
14 19 0.59
15 11 0.34
16 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (14 bp):
TGTAATTATAAGTT
Found at i:21551045 original size:44 final size:44
Alignment explanation
Indices: 21550989--21551084 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 44
21550979 TTGTTAATTC
*
21550989 TATTTATGTAATTA-ATATTTATGTAATT-ATAAGTT-TGTAATTAA
1 TATTTATGTAATTATA-AGTT-TGTAATTAAT-AGTTATGTAATTAA
*
21551033 TATTTATGTAATTATAAGTTTGTAATTAATATTTATGTAATTAA
1 TATTTATGTAATTATAAGTTTGTAATTAATAGTTATGTAATTAA
*
21551077 AATTTATG
1 TATTTATG
21551085 ATTTTAGTCC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
43 10 0.22
44 35 0.76
45 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (44 bp):
TATTTATGTAATTATAAGTTTGTAATTAATAGTTATGTAATTAA
Found at i:21552332 original size:372 final size:372
Alignment explanation
Indices: 21551642--21552338 Score: 1340
Period size: 372 Copynumber: 1.9 Consensus size: 372
21551632 TTAAATGTTC
21551642 TTGACACATAATTTCCAGTAGAGCTAACTCCTTTTCTCTTTTTGTTTGTGGAAGACATTTCATGT
1 TTGACACATAATTTCCAGTAGAGCTAACTCCTTTTCTCTTTTTGTTTGTGGAAGACATTTCATGT
21551707 GGAATGAATTGACTGGTAATATACCGAAGGAGATAGGACATATCTCTACCTTAAGACTCCTGTAA
66 GGAATGAATTGACTGGTAATATACCGAAGGAGATAGGACATATCTCTACCTTAAGACTCCTGTAA
*
21551772 GTTGGATTTTTCTTATTCCTTCTTCTTCTTCACTAAAGAAATATGAGGTAATAATAAGTTTCTCA
131 GTTGGATTTTTCTTATTCCTTCTTCTTCTTCAATAAAGAAATATGAGGTAATAATAAGTTTCTCA
21551837 GCCAAAGATCAATTTTATATGGTGCAAAGATCCATTTAAAGTTGTTAAAATATATAAATGAAAGG
196 GCCAAAGATCAATTTTATATGGTGCAAAGATCCATTTAAAGTTGTTAAAATATATAAATGAAAGG
*
21551902 CTCTTTGAGTTTGAAGATGAAGTGGTTGTCCAAAAATAAAGAGAAAAACGTGATATTTGTTAGTT
261 CTCTTTGAGTTTGAAGATGAAGTGGTTGTCCAAAAATAAAGAGAAAAACATGATATTTGTTAGTT
21551967 AAGAAGCAGAGGAACAAAGAACCAGCGAGAGAAGAGATGAGAGCAAT
326 AAGAAGCAGAGGAACAAAGAACCAGCGAGAGAAGAGATGAGAGCAAT
* *
21552014 TTGATACATAATTTCCAGTAGAGCTAACTCCTTTTCTCTTTTTGTTTGTGGAAGAGATTTCATGT
1 TTGACACATAATTTCCAGTAGAGCTAACTCCTTTTCTCTTTTTGTTTGTGGAAGACATTTCATGT
*
21552079 GGAATGAATTGACTGGTAGTATACCGAAGGAGATAGGACATATCTCTACCTTAAGACTCCTGTAA
66 GGAATGAATTGACTGGTAATATACCGAAGGAGATAGGACATATCTCTACCTTAAGACTCCTGTAA
21552144 GTTGGATTTTTCTTATTCCTTCTTCTTCTTCAATAAAGAAATATGAGGTAATAATAAGTTTCTCA
131 GTTGGATTTTTCTTATTCCTTCTTCTTCTTCAATAAAGAAATATGAGGTAATAATAAGTTTCTCA
*
21552209 GCCTAAGATCAATTTTATATGGTGCAAAGATCCATTTAAAGTTGTTAAAATATATAAATGAAAGG
196 GCCAAAGATCAATTTTATATGGTGCAAAGATCCATTTAAAGTTGTTAAAATATATAAATGAAAGG
21552274 CTCTTTGAGTTTGAAGATGAAGTGGTTGTCCAAAAATAAAGAGAAAAACATGATATTTGTTAGTT
261 CTCTTTGAGTTTGAAGATGAAGTGGTTGTCCAAAAATAAAGAGAAAAACATGATATTTGTTAGTT
21552339 TTGACTTTCT
Statistics
Matches: 319, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
372 319 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (372 bp):
TTGACACATAATTTCCAGTAGAGCTAACTCCTTTTCTCTTTTTGTTTGTGGAAGACATTTCATGT
GGAATGAATTGACTGGTAATATACCGAAGGAGATAGGACATATCTCTACCTTAAGACTCCTGTAA
GTTGGATTTTTCTTATTCCTTCTTCTTCTTCAATAAAGAAATATGAGGTAATAATAAGTTTCTCA
GCCAAAGATCAATTTTATATGGTGCAAAGATCCATTTAAAGTTGTTAAAATATATAAATGAAAGG
CTCTTTGAGTTTGAAGATGAAGTGGTTGTCCAAAAATAAAGAGAAAAACATGATATTTGTTAGTT
AAGAAGCAGAGGAACAAAGAACCAGCGAGAGAAGAGATGAGAGCAAT
Found at i:21555012 original size:6 final size:6
Alignment explanation
Indices: 21555001--21555027 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
21554991 TTTACACGCT
21555001 ATATAC ATATAC ATATAC ATATAC ATA
1 ATATAC ATATAC ATATAC ATATAC ATA
21555028 ACGTCACCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (6 bp):
ATATAC
Found at i:21560770 original size:211 final size:211
Alignment explanation
Indices: 21560406--21567836 Score: 14862
Period size: 211 Copynumber: 35.2 Consensus size: 211
21560396 TGAAGAGGAA
21560406 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21560471 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21560536 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21560601 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21560617 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21560682 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21560747 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21560812 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21560828 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21560893 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21560958 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21561023 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21561039 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21561104 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21561169 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21561234 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21561250 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21561315 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21561380 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21561445 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21561461 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21561526 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21561591 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21561656 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21561672 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21561737 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21561802 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21561867 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21561883 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21561948 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21562013 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21562078 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21562094 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21562159 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21562224 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21562289 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21562305 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21562370 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21562435 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21562500 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21562516 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21562581 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21562646 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21562711 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21562727 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21562792 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21562857 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21562922 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21562938 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21563003 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21563068 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21563133 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21563149 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21563214 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21563279 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21563344 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21563360 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21563425 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21563490 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21563555 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21563571 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21563636 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21563701 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21563766 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21563782 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21563847 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21563912 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21563977 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21563993 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21564058 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21564123 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21564188 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21564204 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21564269 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21564334 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21564399 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21564415 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21564480 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21564545 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21564610 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21564626 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21564691 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21564756 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21564821 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21564837 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21564902 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21564967 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21565032 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21565048 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21565113 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21565178 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21565243 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21565259 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21565324 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21565389 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21565454 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21565470 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21565535 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21565600 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21565665 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21565681 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21565746 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21565811 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21565876 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21565892 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21565957 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21566022 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21566087 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21566103 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21566168 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21566233 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21566298 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21566314 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21566379 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21566444 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21566509 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21566525 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21566590 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21566655 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21566720 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21566736 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21566801 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21566866 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21566931 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21566947 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21567012 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21567077 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21567142 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21567158 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21567223 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21567288 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21567353 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21567369 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21567434 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21567499 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21567564 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21567580 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
21567645 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
66 TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
21567710 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
131 ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
21567775 ACATGAGTCGGACATG
196 ACATGAGTCGGACATG
21567791 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTG
1 ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTG
21567837 TTTTTATAAA
Statistics
Matches: 7220, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
211 7220 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.37
Consensus pattern (211 bp):
ATCATTTTGTAAAATGACTACTTTTTTCCCCACTTTGTTTCACCTGGAAAGGATATTATTTGTTG
TAAATCATGAATTATTCAAAAACAAAATACAATGCAATTTGTAATTCATATGACTCTTTGACGGT
ATCTTTTGATTATTCCATATTTTTCAAAGATGGTGAGTTTATGCACGCTGCAGCGCCGAGAGATA
ACATGAGTCGGACATG
Found at i:21567877 original size:20 final size:20
Alignment explanation
Indices: 21567838--21567876 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
21567828 TTTCACCTGT
*
21567838 TTTTATAAAATATTATAAAA
1 TTTTATAAAATATCATAAAA
21567858 TTTTATAAAA-ATCATAAAA
1 TTTTATAAAATATCATAAAA
21567877 AAACTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTTATAAAATATCATAAAA
Found at i:21568420 original size:97 final size:92
Alignment explanation
Indices: 21568257--21568449 Score: 237
Period size: 97 Copynumber: 2.0 Consensus size: 92
21568247 AATTGAGTGC
* *
21568257 AAAAAAAAAAGTAAGACTTAATTGCTTTTTTGAAAAAGTTTAAGGACCTTTTTGATGAATTTTGA
1 AAAAAAAAAAGTAAGACTTAATTGCTTTTTTGAAAAAATTTAAGGACCTTTTTGATGAATTGTGA
*
21568322 AAGTTCAAAT-TCCTAATTGAGTGAAAA
66 AAGTTCAAATATCC-AAGTGAGTGAAAA
* ** *
21568349 GAAAAAAAGAAAGT-AGAAGCTTAATTGCTTTTTTTGAAAAAAATTTGAGGGTCTTTTTGATGCA
1 -AAAAAAA-AAAGTAAG-A-CTTAATTGC-TTTTTTG-AAAAAATTTAAGGACCTTTTTGATGAA
*
21568413 TTGTGAAAGTTCAAGTATCCAAGTGAGTGAAAA
60 TTGTGAAAGTTCAAATATCCAAGTGAGTGAAAA
21568446 AAAA
1 AAAA
21568450 TACTTAATTT
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
93 9 0.10
94 6 0.07
95 9 0.10
96 11 0.13
97 48 0.56
98 3 0.03
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.33
Consensus pattern (92 bp):
AAAAAAAAAAGTAAGACTTAATTGCTTTTTTGAAAAAATTTAAGGACCTTTTTGATGAATTGTGA
AAGTTCAAATATCCAAGTGAGTGAAAA
Found at i:21569079 original size:28 final size:29
Alignment explanation
Indices: 21569034--21569122 Score: 83
Period size: 28 Copynumber: 3.0 Consensus size: 29
21569024 ATTTATTTGT
*
21569034 TTAGGGTTTAGTGATTTTAA-AAATTAAA
1 TTAGGGTTTAGGGATTTTAAGAAATTAAA
* *
21569062 TTAGGTTTTAGGGGTTTTAAGTAAATTAATTAA
1 TTAGGGTTTAGGGATTTTAAG-AAATT-A--AA
*
21569095 ATAGGGTTTA-GGATTTTTAAGAAATTAA
1 TTAGGGTTTAGGGA-TTTTAAGAAATTAA
21569123 TTAAATTAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
28 17 0.35
29 1 0.02
30 5 0.10
31 2 0.04
32 7 0.14
33 17 0.35
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (29 bp):
TTAGGGTTTAGGGATTTTAAGAAATTAAA
Found at i:21569113 original size:33 final size:33
Alignment explanation
Indices: 21569055--21569145 Score: 130
Period size: 33 Copynumber: 2.8 Consensus size: 33
21569045 TGATTTTAAA
* **
21569055 AATTAAATTAGGTTTTAGGGGTTTTAAGTAAATT
1 AATTAAATTAGGGTTTAGGATTTTTAAG-AAATT
21569089 AATTAAA-TAGGGTTTAGGATTTTTAAGAAATT
1 AATTAAATTAGGGTTTAGGATTTTTAAGAAATT
*
21569121 AATTAAATTAGTGTTTAGGATTTTT
1 AATTAAATTAGGGTTTAGGATTTTT
21569146 TAAAAATAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 12 0.23
33 33 0.63
34 7 0.13
ACGTcount: A:0.36, C:0.00, G:0.19, T:0.45
Consensus pattern (33 bp):
AATTAAATTAGGGTTTAGGATTTTTAAGAAATT
Found at i:21569162 original size:28 final size:31
Alignment explanation
Indices: 21569034--21569166 Score: 95
Period size: 33 Copynumber: 4.4 Consensus size: 31
21569024 ATTTATTTGT
*
21569034 TTAGGGTTTAGTGA-TTTTAA-AAATTAA--A
1 TTAGTGTTTAG-GATTTTTAAGAAATTAATTA
**
21569062 TTAG-GTTTTAGGGGTTTTAAGTAAATTAATTAA
1 TTAGTG-TTTAGGATTTTTAAG-AAATTAATT-A
* *
21569095 ATAGGGTTTAGGATTTTTAAGAAATTAATTAAA
1 TTAGTGTTTAGGATTTTTAAGAAATTAATT--A
21569128 TTAGTGTTTAGGATTTTTTAA-AAA-TAATT-
1 TTAGTGTTTAGGA-TTTTTAAGAAATTAATTA
21569157 TT-GTGTTTAG
1 TTAGTGTTTAG
21569167 CTTTTAGGGT
Statistics
Matches: 89, Mismatches: 6, Indels: 20
0.77 0.05 0.17
Matches are distributed among these distances:
27 2 0.02
28 23 0.26
29 2 0.02
30 7 0.08
32 14 0.16
33 33 0.37
34 8 0.09
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (31 bp):
TTAGTGTTTAGGATTTTTAAGAAATTAATTA
Found at i:21569393 original size:14 final size:14
Alignment explanation
Indices: 21569376--21569418 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
21569366 CTATAGTAGT
21569376 TTTTGAAAAAATAA
1 TTTTGAAAAAATAA
* *
21569390 TTTTGAGAAAAT-T
1 TTTTGAAAAAATAA
21569403 TTTCTGAAAAAATAA
1 TTT-TGAAAAAATAA
21569418 T
1 T
21569419 GTTAAAAACG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 3 0.13
14 19 0.83
15 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (14 bp):
TTTTGAAAAAATAA
Found at i:21569519 original size:126 final size:126
Alignment explanation
Indices: 21569236--21569755 Score: 609
Period size: 126 Copynumber: 4.1 Consensus size: 126
21569226 ACTTTGTTTT
* * * * **
21569236 TTTTTCTATAGTAGTT-TCTGAAAAATTAATTTTGAGCAGATGGTTT-TGAAAAAATAGTGACAA
1 TTTTTCTACAGTAGTTCT-TGAAAAAATAATTTTGAGAAGA-CGTTTCTGAAAAAATAGTGTTAA
* * *
21569299 AAACGCTTCAAGCAGGATGCACCGTCAGCAAAAGTACT-AAAAAAGTTCCTACGTGGACGCTC
64 AAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTC
* * * ** *
21569361 TTTTTCTATAGTAGTTTTTGAAAAAATAATTTTGAGAAAATTTTTCTGAAAAAATAATGTTAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTTAAAA
* * *
21569426 ACGCATCAAGCAGTATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGTTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTC
* * * *
21569487 TTTTTCTACAATAGTTCTTGAAAAAATAATTTTGAGAAGACGATTCTTAAAAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTTAAAA
* * *
21569552 ACGCTTCAAGTAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCCACGTAGG-CGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGT-GGACGCTC
* * * *
21569613 TTTTTCTACAGTAGTTCCTGAAAAACTAATTTTAAGAAGACAG-TTATGAAAAAATAGTGTTAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGAC-GTTTCTGAAAAAATAGTGTTAAA
** * * * * ** *
21569677 AACGCTTCAAATAGGATGCGCTATCAGCAAAATTACTGAAAAAAAGATCCCATATGGATGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTG-AAAAAAGCTCCCACGTGGACGCTC
*
21569740 TTTTTCTATAGTAGTT
1 TTTTTCTACAGTAGTT
21569756 TCTACTTGGC
Statistics
Matches: 342, Mismatches: 46, Indels: 12
0.86 0.12 0.03
Matches are distributed among these distances:
124 3 0.01
125 84 0.25
126 220 0.64
127 35 0.10
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTTAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:21574844 original size:26 final size:24
Alignment explanation
Indices: 21574790--21574843 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 24
21574780 ACTGTTATAA
* *
21574790 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAAATAATT
21574814 AAAATTACATAAATGAAAAAATATATT
1 AAAATTACA-AAAT-AAAAAATA-ATT
21574841 AAA
1 AAA
21574844 TAATATTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.32
25 4 0.16
26 7 0.28
27 6 0.24
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AAAATTACAAAATAAAAAATAATT
Found at i:21575082 original size:23 final size:23
Alignment explanation
Indices: 21575056--21575099 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
21575046 AAAGCTTTTG
*
21575056 TAATACCTCAAAAAGTACTACTA
1 TAATACCCCAAAAAGTACTACTA
* *
21575079 TAATACCCCGAAAATTACTAC
1 TAATACCCCAAAAAGTACTAC
21575100 AGTAAGAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.25, G:0.05, T:0.25
Consensus pattern (23 bp):
TAATACCCCAAAAAGTACTACTA
Found at i:21577354 original size:17 final size:18
Alignment explanation
Indices: 21577340--21577423 Score: 80
Period size: 19 Copynumber: 4.4 Consensus size: 18
21577330 ATAATCTTCG
21577340 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
21577358 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
*
21577377 TATGATATATGCAATCTTAGA
1 -A-G-GATATGCAATCTTAGA
* *
21577398 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
21577417 A-GATATG
1 AGGATATG
21577424 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 33 0.58
21 17 0.30
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:21577366 original size:19 final size:19
Alignment explanation
Indices: 21577342--21577416 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
21577332 AATCTTCGAG
21577342 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
21577361 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
21577380 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
21577401 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
21577417 AGATATGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:21577388 original size:21 final size:21
Alignment explanation
Indices: 21577343--21577405 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
21577333 ATCTTCGAGG
21577343 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
21577362 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
21577383 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
21577404 AT
1 AT
21577406 GTAATCTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.45
21 23 0.55
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:21577435 original size:23 final size:22
Alignment explanation
Indices: 21577355--21577439 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
21577345 ATGCAATCTT
*
21577355 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
21577376 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
21577395 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
21577417 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
21577440 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:21577449 original size:22 final size:23
Alignment explanation
Indices: 21577405--21577449 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
21577395 AGATATGATA
*
21577405 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
21577428 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
21577450 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:21584016 original size:88 final size:88
Alignment explanation
Indices: 21583867--21584511 Score: 993
Period size: 88 Copynumber: 7.3 Consensus size: 88
21583857 ATCAGTGAAG
* * * * *
21583867 ATAGCAGATCTTGCCTTCCTGTACTGGCAACGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
21583932 GGTTGCAGCGGAGCAGGTTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* *
21583955 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGTCACCAGCCTTGCCTCCTTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
21584020 GGTTGCAGTGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* ** * *
21584043 ATAGCAGATCTTGCCTTCCTACACTAACAGCGAAGCAGATCGAAGACACCAGCCTTACCTCCTTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
21584108 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * **
21584131 ATAGCAGATCTTGCCTTCCTGCACCTACAGCGAAGCAGATCGAAGACACCAGCCTTGCTTCTTTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
21584196 GGTTGCAACAGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
** **
21584219 ATAGCAGATCTTGCCTTCCTGCACCGACAGTAAAGCAGATCGAAGACACCAGCCTTGCCTTACTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
21584284 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * *
21584307 ATAGCAGACCTTGCCTTCCTGCACCGATAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
21584372 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * * * *
21584395 ATAGTAGATCTTGCCTTCCTGTACCGACAGCGAAACAGATCGAAGTCACCAACCTTACCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
21584460 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
21584483 ATAGCAGATCTTGCCTTCCTGCACCGACA
1 ATAGCAGATCTTGCCTTCCTGCACCGACA
21584512 NNNNNNNNNN
Statistics
Matches: 507, Mismatches: 50, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 507 1.00
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.20
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAGGCTAAAA
Found at i:21584752 original size:44 final size:43
Alignment explanation
Indices: 21584703--21584990 Score: 293
Period size: 44 Copynumber: 6.7 Consensus size: 43
21584693 TGACCCTAGC
21584703 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTGAGAAT
* * *
21584747 TCTATCTCCCTAAGCAGCAGTGGAATAGATT--A-A---AGAAT
1 CCTATCTCCCT-GGCAGCAGTGGAATAGGTTGAAGATTGAGAAT
* * *
21584785 CCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCT-GGCAGCAGTGGAATAGGTTGAAGATTGAGAAT
21584829 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTGAGAAT
* * * *
21584873 TCTATCTCCCTAGGCAGCAATGGAATAGATTGAAGATTGTA-AGT
1 CCTATCTCCCT-GGCAGCAGTGGAATAGGTTGAAGATTG-AGAAT
* * * * * * *
21584917 CCTATATCCCTGGTCAGTAGTGGAATAAGTTGTAGATCGTGAAC
1 CCTATCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTGAGAAT
*
21584961 CCTATCTCCCTGAGCAGCAGTGGAGTAGGT
1 CCTATCTCCCTG-GCAGCAGTGGAATAGGT
21584991 GGAAAATAGA
Statistics
Matches: 201, Mismatches: 30, Indels: 26
0.78 0.12 0.10
Matches are distributed among these distances:
38 32 0.16
40 1 0.00
41 2 0.01
42 1 0.00
43 3 0.01
44 157 0.78
45 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
CCTATCTCCCTGGCAGCAGTGGAATAGGTTGAAGATTGAGAAT
Found at i:21584821 original size:82 final size:85
Alignment explanation
Indices: 21584703--21584943 Score: 267
Period size: 82 Copynumber: 2.8 Consensus size: 85
21584693 TGACCCTAGC
* * *
21584703 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAAG-CAGCAG
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCT-AGTCAGCAG
21584767 TGGAATAGATT-A-A-AGAAT
65 TGGAATAGATTAAGATAGAAT
* * *
21584785 CCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTAGTCAGCAGT
*
21584850 GGAATAGGTTGAAGATTGAGAAT
66 GGAATAGATT-AAGA-T-AGAAT
* * * * * * * *
21584873 TCTATCTCCCTAGGCAGCAATGGAATAGATTGAAGATTGTA-AGTCCTATATCCCTGGTCAGTAG
1 CCTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTG-AGAATCCTATCTCCCTAGTCAGCAG
21584937 TGGAATA
65 TGGAATA
21584944 AGTTGTAGAT
Statistics
Matches: 135, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
81 1 0.01
82 66 0.49
84 1 0.01
85 1 0.01
88 66 0.49
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (85 bp):
CCTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTAGTCAGCAGT
GGAATAGATTAAGATAGAAT
Found at i:21584898 original size:126 final size:131
Alignment explanation
Indices: 21584702--21584990 Score: 410
Period size: 126 Copynumber: 2.2 Consensus size: 131
21584692 ATGACCCTAG
*
21584702 CCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAAGCAGCAG
1 CCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAAGCAGCAA
* * *
21584767 TGGAATAGATT-AA-A-G-AA-TCCTATCTCCCTAGACAGCAGTGGAATAGGTTAAAGATTGTGA
66 TGGAATAGATTGAAGATGTAAGTCCTATATCCCTAGACAGCAGTGGAATAAGTTAAAGATCGTGA
21584827 A
131 A
* *
21584828 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAA
1 CCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAAGCAGCAA
* * * **
21584893 TGGAATAGATTGAAGATTGTAAGTCCTATATCCCTGGTCAGTAGTGGAATAAGTTGTAGATCGTG
66 TGGAATAGATTGAAGA-TGTAAGTCCTATATCCCTAGACAGCAGTGGAATAAGTTAAAGATCGTG
21584958 AA
130 AA
*
21584960 CCCTATCTCCCTGAG-CAGCAGTGGAGTAGGT
1 CCCTATCTCCCTG-GTCAGCAGTGGAATAGGT
21584991 GGAAAATAGA
Statistics
Matches: 143, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
126 73 0.51
127 2 0.01
128 1 0.01
130 1 0.01
131 2 0.01
132 63 0.44
133 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (131 bp):
CCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAAGCAGCAA
TGGAATAGATTGAAGATGTAAGTCCTATATCCCTAGACAGCAGTGGAATAAGTTAAAGATCGTGA
A
Found at i:21585390 original size:44 final size:44
Alignment explanation
Indices: 21585297--21585400 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 44
21585287 ATGACAAATT
* * *
21585297 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATC
1 TTATCTCCCTGAAGTTACAGTGAAGCAGATTAAAACCGATAATC
* * * *
21585341 CTATCTCCCTGAAGTTACAGTGAAGCGGATTAAAACC-TTGGATC
1 TTATCTCCCTGAAGTTACAGTGAAGCAGATTAAAACCGAT-AATC
*
21585385 TTATCTCTCTGAAGTT
1 TTATCTCCCTGAAGTT
21585401 GCAGAGAGCA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 1 0.02
44 49 0.98
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTACAGTGAAGCAGATTAAAACCGATAATC
Found at i:21585748 original size:17 final size:17
Alignment explanation
Indices: 21585696--21585748 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
21585686 TATGGAAACA
* *
21585696 TAATCTTCGAGGATATG
1 TAATCTTAGAAGATATG
*
21585713 CAATCTTAGATATGATATG
1 TAATCTTAGA-A-GATATG
21585732 TAATCTTAGAAGATATG
1 TAATCTTAGAAGATATG
21585749 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 15 0.50
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (17 bp):
TAATCTTAGAAGATATG
Found at i:21585748 original size:22 final size:23
Alignment explanation
Indices: 21585720--21585764 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
21585710 ATGCAATCTT
21585720 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
21585742 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
21585765 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:21585767 original size:22 final size:23
Alignment explanation
Indices: 21585720--21585778 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 23
21585710 ATGCAATCTT
*
21585720 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTTTGTAATCTTAGA
21585742 AGATATGATTTTGTAATCTTAG-
1 AGATATGATTTTGTAATCTTAGA
* *
21585764 AGATTTAATTTTGTA
1 AGATATGATTTTGTA
21585779 GATACCTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 21 0.64
23 12 0.36
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (23 bp):
AGATATGATTTTGTAATCTTAGA
Found at i:21594038 original size:12 final size:12
Alignment explanation
Indices: 21594021--21594049 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
21594011 TAAAACTTAG
21594021 TATATATTATAT
1 TATATATTATAT
21594033 TATATATTATAT
1 TATATATTATAT
21594045 TATAT
1 TATAT
21594050 TAATAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATATATTATAT
Found at i:21594049 original size:51 final size:51
Alignment explanation
Indices: 21593482--21594036 Score: 1101
Period size: 51 Copynumber: 10.9 Consensus size: 51
21593472 AAAGTTAAAA
21593482 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593533 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593584 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593635 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593686 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593737 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593788 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593839 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593890 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
21593941 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
*
21593992 AGTATATATTATATAATATTAAAACTTAGTATATATTATATTATA
1 AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATA
21594037 TATTATATTA
Statistics
Matches: 503, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 503 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (51 bp):
AGTATATATTATATAATATTAAAACTTAGTATAAATTATATTATAAAACTT
Found at i:21595137 original size:40 final size:40
Alignment explanation
Indices: 21595016--21595155 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
21595006 GACTTCGAGT
* * * *
21595016 CGATGAGACATTGGGTGTCAATTTATTACTTTAGATTAATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCAGATT-ATC
* * * * *
21595057 CGATGAGGCACTGGGTG-CCAA-T-TTACTTCGGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCAGATTATC
* *
21595094 CGATGAGACACTGGGTGTCAAATTATTACTTCAAAATATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCAGATTATC
* * *
21595134 CGATGAGGCATTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
21595156 CTGGTGTATT
Statistics
Matches: 77, Mismatches: 19, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
37 17 0.22
38 12 0.16
39 2 0.03
40 31 0.40
41 15 0.19
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCAGATTATC
Found at i:21597383 original size:29 final size:31
Alignment explanation
Indices: 21597351--21597411 Score: 90
Period size: 29 Copynumber: 2.0 Consensus size: 31
21597341 AAACCTTTTT
*
21597351 ACTTTCCCCCCAATA-TTTTAC-TCCCTCCC
1 ACTTTCCCCCCAAAACTTTTACTTCCCTCCC
*
21597380 ACTTTCCCCCCAAAACTTTTACTTTCCTCCC
1 ACTTTCCCCCCAAAACTTTTACTTCCCTCCC
21597411 A
1 A
21597412 TCCCAACCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 14 0.50
30 6 0.21
31 8 0.29
ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34
Consensus pattern (31 bp):
ACTTTCCCCCCAAAACTTTTACTTCCCTCCC
Found at i:21605759 original size:26 final size:26
Alignment explanation
Indices: 21605729--21605787 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
21605719 AAACTTTTCT
*
21605729 AAAAGAAGCTTAAGAGAAATTCTTAA
1 AAAAGAAGCTCAAGAGAAATTCTTAA
21605755 AAAAGAAGCTCAAGAGAAATTCTTAA
1 AAAAGAAGCTCAAGAGAAATTCTTAA
21605781 AAAAGAA
1 AAAAGAA
21605788 AACTCAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.19
Consensus pattern (26 bp):
AAAAGAAGCTCAAGAGAAATTCTTAA
Found at i:21605808 original size:27 final size:26
Alignment explanation
Indices: 21605729--21605800 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
21605719 AAACTTTTCT
* *
21605729 AAAAGAAGCTTAAGAGAAATTCTTAA
1 AAAAGAAACTCAAGAGAAATTCTTAA
*
21605755 AAAAGAAGCTCAAGAGAAATTCTTAA
1 AAAAGAAACTCAAGAGAAATTCTTAA
21605781 AAAAGAAAACTCAAAGAGAA
1 AAAAG-AAACTC-AAGAGAA
21605801 TTTATAAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 30 0.71
27 5 0.12
28 7 0.17
ACGTcount: A:0.58, C:0.10, G:0.15, T:0.17
Consensus pattern (26 bp):
AAAAGAAACTCAAGAGAAATTCTTAA
Found at i:21621978 original size:13 final size:12
Alignment explanation
Indices: 21621960--21622020 Score: 68
Period size: 13 Copynumber: 4.8 Consensus size: 12
21621950 ATTTTCCTAC
21621960 TTTATTATTATTA
1 TTTATTATT-TTA
*
21621973 TTTATTTTTTTA
1 TTTATTATTTTA
21621985 TTCTATTATTTTA
1 TT-TATTATTTTA
*
21621998 TTTCTTTATTTTA
1 TTT-ATTATTTTA
21622011 TTTTATTATT
1 -TTTATTATT
21622021 CGGTTTATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
12 6 0.15
13 32 0.78
14 3 0.07
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTATTATTTTA
Found at i:21621986 original size:21 final size:21
Alignment explanation
Indices: 21621959--21622020 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
21621949 CATTTTCCTA
21621959 CTTTATTATTATTA-TTTATTT
1 CTTTATT-TTATTATTTTATTT
* *
21621980 TTTTATTCTATTATTTTATTT
1 CTTTATTTTATTATTTTATTT
21622001 CTTTATTTTATT-TTATTATT
1 CTTTATTTTATTATT-TTATT
21622021 CGGTTTATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 7 0.20
21 28 0.80
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (21 bp):
CTTTATTTTATTATTTTATTT
Found at i:21621991 original size:26 final size:26
Alignment explanation
Indices: 21621962--21622020 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
21621952 TTTCCTACTT
21621962 TATTATTATTATTTATTT-TTTTATTC
1 TATTATT-TTATTTATTTATTTTATTC
* *
21621988 TATTATTTTATTTCTTTATTTTATTT
1 TATTATTTTATTTATTTATTTTATTC
21622014 TATTATT
1 TATTATT
21622021 CGGTTTATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (26 bp):
TATTATTTTATTTATTTATTTTATTC
Found at i:21622348 original size:33 final size:34
Alignment explanation
Indices: 21622274--21622349 Score: 82
Period size: 36 Copynumber: 2.2 Consensus size: 34
21622264 TTTTAGTTTA
* *
21622274 TTATTATAGTTACTACTATTATTCGTCCTTATTT
1 TTATTATAGTTACTACTATGATTCGTCCTTATGT
* * *
21622308 TACTATTATGGTTATTATTATGATTCGTCCTTA-GT
1 T--TATTATAGTTACTACTATGATTCGTCCTTATGT
21622343 TTATTAT
1 TTATTAT
21622350 TTTGAATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
33 6 0.17
34 1 0.03
35 2 0.06
36 26 0.74
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.55
Consensus pattern (34 bp):
TTATTATAGTTACTACTATGATTCGTCCTTATGT
Found at i:21623971 original size:6 final size:6
Alignment explanation
Indices: 21623962--21623995 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
21623952 TTTGTTTTCT
21623962 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
21623996 TATGTTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:21624020 original size:6 final size:6
Alignment explanation
Indices: 21623956--21624047 Score: 58
Period size: 6 Copynumber: 14.5 Consensus size: 6
21623946 ATTTTATTTG
* * * * * *
21623956 TTTTCT TTTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTTAT GTTTAT
1 TTTTAT TTTT-AT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * *
21624005 GTTTATT TTTTAT TTTTAGTT GTTTTGT TTTTTT TTTTAT TTT
1 TTTTA-T TTTTAT TTTTA--T -TTTTAT TTTTAT TTTTAT TTT
21624048 CTTATAGTTC
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
6 58 0.79
7 10 0.14
8 1 0.01
9 4 0.05
ACGTcount: A:0.17, C:0.01, G:0.05, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:21624033 original size:26 final size:26
Alignment explanation
Indices: 21623954--21624047 Score: 79
Period size: 25 Copynumber: 3.7 Consensus size: 26
21623944 TGATTTTATT
* * *
21623954 TGTTTTCTTTTTAATTTTAAT-TTTA
1 TGTTTTATTTTTTATTTTTATGTTTA
* * *
21623979 -ATTTTAATTTTAATTTTTATGTTTA
1 TGTTTTATTTTTTATTTTTATGTTTA
21624004 TG-TTTATTTTTTATTTTTAGTTGTTT-
1 TGTTTTATTTTTTATTTTTA--TGTTTA
*
21624030 TGTTTTTTTTTTTATTTT
1 TGTTTTATTTTTTATTTT
21624048 CTTATAGTTC
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
24 16 0.29
25 19 0.34
26 2 0.04
27 19 0.34
ACGTcount: A:0.17, C:0.01, G:0.06, T:0.76
Consensus pattern (26 bp):
TGTTTTATTTTTTATTTTTATGTTTA
Found at i:21624040 original size:27 final size:25
Alignment explanation
Indices: 21623981--21624047 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 25
21623971 TAATTTTAAT
* *
21623981 TTTAATTTTAATTTTTATGTTTATG
1 TTTATTTTTTATTTTTATGTTTATG
21624006 TTTATTTTTTATTTTTAGTTGTTT-TG
1 TTTATTTTTTATTTTTA--TGTTTATG
*
21624032 TTTTTTTTTTTATTTT
1 -TTTATTTTTTATTTT
21624048 CTTATAGTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 15 0.42
26 2 0.06
27 19 0.53
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (25 bp):
TTTATTTTTTATTTTTATGTTTATG
Found at i:21626563 original size:36 final size:36
Alignment explanation
Indices: 21626473--21626580 Score: 191
Period size: 36 Copynumber: 3.0 Consensus size: 36
21626463 AATTAGAAAG
21626473 AGATTTCAATTAATCAACTTAGAGTCAGTTGTTCTT
1 AGATTTCAATTAATCAACTTAGAGTCAGTTGTTCTT
* *
21626509 AGATTTC-ATTAATCAACTTAAAGTGAGTTGTTCTT
1 AGATTTCAATTAATCAACTTAGAGTCAGTTGTTCTT
21626544 AGATTTCAATTAATCAACTTAGAGTCAGTTGTTCTT
1 AGATTTCAATTAATCAACTTAGAGTCAGTTGTTCTT
21626580 A
1 A
21626581 CTCTCGAAAG
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 33 0.49
36 34 0.51
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (36 bp):
AGATTTCAATTAATCAACTTAGAGTCAGTTGTTCTT
Found at i:21627023 original size:9 final size:9
Alignment explanation
Indices: 21627009--21627044 Score: 63
Period size: 9 Copynumber: 3.9 Consensus size: 9
21626999 AAATTATAAG
21627009 TTTTTTTTC
1 TTTTTTTTC
21627018 TTTTTTTTC
1 TTTTTTTTC
21627027 TTTTTTTTC
1 TTTTTTTTC
21627036 TTTTCTTTT
1 TTTT-TTTT
21627045 ACTTAATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 22 0.85
10 4 0.15
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:21629634 original size:42 final size:42
Alignment explanation
Indices: 21629575--21629659 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
21629565 TGATTACAAG
21629575 TTAGTGCATTTAAACATAGCACTTTTGGAATCAACTTCATGA
1 TTAGTGCATTTAAACATAGCACTTTTGGAATCAACTTCATGA
21629617 TTAGTGCATTTAAACATAGCACTTTTGGAATCAACTTCATGA
1 TTAGTGCATTTAAACATAGCACTTTTGGAATCAACTTCATGA
21629659 T
1 T
21629660 AAACCATTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (42 bp):
TTAGTGCATTTAAACATAGCACTTTTGGAATCAACTTCATGA
Found at i:21637829 original size:46 final size:46
Alignment explanation
Indices: 21637757--21637877 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
21637747 TTTATCATGT
* * * * *
21637757 TTGAAGTGTTAAAGTGTTGCATATTGAAGTATTTATATGCTGTGAA
1 TTGAAGTGTTAAAGTGCTGCAAATTGAAGTATTTAAATGCTATAAA
* *
21637803 TTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTATAAA
1 TTGAAGTGTTAAAGTGCTGCAAATTGAAGTATTTAAATGCTATAAA
* *
21637849 TGGAAGTGTTTTAAA-TACTGCAAATTGAA
1 TTGAAGTG--TTAAAGTGCTGCAAATTGAA
21637878 TTGTTTAGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 46 0.72
47 13 0.20
48 5 0.08
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (46 bp):
TTGAAGTGTTAAAGTGCTGCAAATTGAAGTATTTAAATGCTATAAA
Found at i:21637849 original size:23 final size:23
Alignment explanation
Indices: 21637757--21637949 Score: 115
Period size: 23 Copynumber: 8.4 Consensus size: 23
21637747 TTTATCATGT
* *
21637757 TTGAAGTG-TTAAAGTGTTGCATA
1 TTGAAGTGTTTAAA-TGCTGCAAA
* * **
21637780 TTGAAGTATTTATATGCTGTGAA
1 TTGAAGTGTTTAAATGCTGCAAA
21637803 TTGAAGTG-TTAAAGTGCTGCAAA
1 TTGAAGTGTTTAAA-TGCTGCAAA
* **
21637826 TTGAAGTGTTTAAATGTTATAAA
1 TTGAAGTGTTTAAATGCTGCAAA
* *
21637849 TGGAAGTGTTTTAAATACTGCAAA
1 TTGAAGTG-TTTAAATGCTGCAAA
* ** *
21637873 TTGAATTGTTTAGTTGCTGAAAA
1 TTGAAGTGTTTAAATGCTGCAAA
* * *
21637896 TTG-AGATGTTTTATTGCTG-TAA
1 TTGAAG-TGTTTAAATGCTGCAAA
* * * * *
21637918 CTGAGGTGTATAAATGTTGTAAA
1 TTGAAGTGTTTAAATGCTGCAAA
21637941 TTGAAGTGT
1 TTGAAGTGT
21637950 CTATTGCTGA
Statistics
Matches: 126, Mismatches: 37, Indels: 14
0.71 0.21 0.08
Matches are distributed among these distances:
22 18 0.14
23 82 0.65
24 26 0.21
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.40
Consensus pattern (23 bp):
TTGAAGTGTTTAAATGCTGCAAA
Found at i:21637873 original size:24 final size:24
Alignment explanation
Indices: 21637801--21637883 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
21637791 ATATGCTGTG
*
21637801 AATTGAAGTG--TTAAAGTGCTGCA
1 AATTGAAGTGTTTTAAA-TACTGCA
** **
21637824 AATTGAAGTG-TTTAAATGTTATA
1 AATTGAAGTGTTTTAAATACTGCA
*
21637847 AATGGAAGTGTTTTAAATACTGCA
1 AATTGAAGTGTTTTAAATACTGCA
*
21637871 AATTGAATTGTTT
1 AATTGAAGTGTTT
21637884 AGTTGCTGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
23 23 0.48
24 25 0.52
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (24 bp):
AATTGAAGTGTTTTAAATACTGCA
Found at i:21638332 original size:38 final size:36
Alignment explanation
Indices: 21638264--21638340 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 36
21638254 TAGAGTATTA
*
21638264 TATATTATGATTTTAATAAATTCATATAATAATAAT
1 TATATTAAGATTTTAATAAATTCATATAATAATAAT
*
21638300 TATATTAAGAATTTTATTAAATT-ATATTTAATAATAAT
1 TATATTAAG-ATTTTAATAAATTCATA--TAATAATAAT
21638338 TAT
1 TAT
21638341 GCTAAAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
36 11 0.31
37 12 0.33
38 13 0.36
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (36 bp):
TATATTAAGATTTTAATAAATTCATATAATAATAAT
Found at i:21641167 original size:38 final size:36
Alignment explanation
Indices: 21641099--21641175 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 36
21641089 TAGAGTATTA
*
21641099 TATATTATGATTTTAATAAATTCATATAATAATAAT
1 TATATTAAGATTTTAATAAATTCATATAATAATAAT
*
21641135 TATATTAAGAATTTTATTAAATT-ATATTTAATAATAAT
1 TATATTAAG-ATTTTAATAAATTCATA--TAATAATAAT
21641173 TAT
1 TAT
21641176 GCTAAAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
36 11 0.31
37 12 0.33
38 13 0.36
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (36 bp):
TATATTAAGATTTTAATAAATTCATATAATAATAAT
Found at i:21641848 original size:13 final size:13
Alignment explanation
Indices: 21641830--21641854 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21641820 TTTTATTTGT
21641830 TTATTCCCACCGA
1 TTATTCCCACCGA
21641843 TTATTCCCACCG
1 TTATTCCCACCG
21641855 GCCGAATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.08, T:0.32
Consensus pattern (13 bp):
TTATTCCCACCGA
Found at i:21647977 original size:44 final size:46
Alignment explanation
Indices: 21647927--21648016 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
21647917 CCTCTATTCT
*
21647927 ATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTAC
1 ATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTAC
*
21647971 ATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCTATTAC
1 ATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTAC
21648017 GCCTCTATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 18 0.43
45 4 0.10
46 20 0.48
ACGTcount: A:0.39, C:0.29, G:0.04, T:0.28
Consensus pattern (46 bp):
ATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTAC
Found at i:21648015 original size:16 final size:16
Alignment explanation
Indices: 21647996--21648048 Score: 97
Period size: 16 Copynumber: 3.3 Consensus size: 16
21647986 AGAATTACCT
*
21647996 ATTACGCCTCTATTCT
1 ATTACGCCTCTATTCC
21648012 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
21648028 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
21648044 ATTAC
1 ATTAC
21648049 AGCGAACCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.21, C:0.34, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:21648016 original size:46 final size:45
Alignment explanation
Indices: 21647919--21648016 Score: 146
Period size: 44 Copynumber: 2.2 Consensus size: 45
21647909 CTATTACACC
*
21647919 TCTATT-CTATTCAACCAAACACAAGAATACCATTACGCCTCTAT
1 TCTATTACTATTCAACCAAACAAAAGAATACCATTACGCCTCTAT
*
21647963 TCCATTAC-ATTCAACCAAACAAAAGAATTACCTATTACGCCTCTAT
1 TCTATTACTATTCAACCAAACAAAAGAA-TACC-ATTACGCCTCTAT
21648009 TCTATTAC
1 TCTATTAC
21648017 GCCTCTATTC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
44 23 0.48
45 5 0.10
46 20 0.42
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.31
Consensus pattern (45 bp):
TCTATTACTATTCAACCAAACAAAAGAATACCATTACGCCTCTAT
Found at i:21648136 original size:38 final size:38
Alignment explanation
Indices: 21648036--21648125 Score: 180
Period size: 38 Copynumber: 2.4 Consensus size: 38
21648026 CCATTACGCC
21648036 TCTATTCCATTACAGCGAACCAAACGCACTGTTATAGT
1 TCTATTCCATTACAGCGAACCAAACGCACTGTTATAGT
21648074 TCTATTCCATTACAGCGAACCAAACGCACTGTTATAGT
1 TCTATTCCATTACAGCGAACCAAACGCACTGTTATAGT
21648112 TCTATTCCATTACA
1 TCTATTCCATTACA
21648126 TTCAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (38 bp):
TCTATTCCATTACAGCGAACCAAACGCACTGTTATAGT
Found at i:21648170 original size:16 final size:16
Alignment explanation
Indices: 21648149--21648188 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
21648139 TTGAATTATT
21648149 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
*
21648165 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCA
21648181 ATTACAGC
1 ATTACAGC
21648189 GAACCAAACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:21651641 original size:20 final size:20
Alignment explanation
Indices: 21651591--21651629 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
21651581 TGGAGCAGGA
*
21651591 ATATCGATACCTTAGGAAAT
1 ATATCGATACCTTAAGAAAT
21651611 ATATCGATACCTTAAGAAA
1 ATATCGATACCTTAAGAAA
21651630 AGTATTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (20 bp):
ATATCGATACCTTAAGAAAT
Found at i:21651890 original size:58 final size:58
Alignment explanation
Indices: 21651820--21651938 Score: 229
Period size: 58 Copynumber: 2.1 Consensus size: 58
21651810 TCAGCTTTAC
21651820 TTTTATTCAAAAACACTTTAATTTATTATATCAAAACAAATAATCCAATAATGATTAG
1 TTTTATTCAAAAACACTTTAATTTATTATATCAAAACAAATAATCCAATAATGATTAG
*
21651878 TTTTATTCAAAAACACTTTAATTTATTATATCAAAACAGATAATCCAATAATGATTAG
1 TTTTATTCAAAAACACTTTAATTTATTATATCAAAACAAATAATCCAATAATGATTAG
21651936 TTT
1 TTT
21651939 AACATGTTTT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.45, C:0.12, G:0.04, T:0.39
Consensus pattern (58 bp):
TTTTATTCAAAAACACTTTAATTTATTATATCAAAACAAATAATCCAATAATGATTAG
Found at i:21653046 original size:18 final size:19
Alignment explanation
Indices: 21653023--21653059 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
21653013 AAAAAATATA
21653023 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
*
21653041 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
21653060 AAAAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:21653066 original size:19 final size:21
Alignment explanation
Indices: 21653028--21653072 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
21653018 ATATATATAA
* *
21653028 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAATTTTAAAAAATT
21653048 ATTTT-GAATTTTAAAAAATT
1 ATTTTAGAATTTTAAAAAATT
21653068 ATTTT
1 ATTTT
21653073 TGAAATTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (21 bp):
ATTTTAGAATTTTAAAAAATT
Found at i:21653201 original size:9 final size:9
Alignment explanation
Indices: 21653185--21653215 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
21653175 ATTCGATTTG
21653185 ACTCGAATA
1 ACTCGAATA
*
21653194 ATTCGAATA
1 ACTCGAATA
21653203 ACTCGAATA
1 ACTCGAATA
21653212 ACTC
1 ACTC
21653216 TATTTGATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26
Consensus pattern (9 bp):
ACTCGAATA
Found at i:21653577 original size:18 final size:18
Alignment explanation
Indices: 21653537--21653583 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
21653527 ACACCAATTT
*
21653537 GTTATTTGAACTATTCAA
1 GTTATTTGAATTATTCAA
* *
21653555 ATTATTTGAATTATTCAC
1 GTTATTTGAATTATTCAA
*
21653573 GTTATTCGAAT
1 GTTATTTGAAT
21653584 GGTTAAATTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (18 bp):
GTTATTTGAATTATTCAA
Found at i:21653826 original size:14 final size:14
Alignment explanation
Indices: 21653809--21653839 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
21653799 AGTAAAATAT
*
21653809 TTTCTGGAAAATGA
1 TTTCTAGAAAATGA
21653823 TTTCTAGAAAATGA
1 TTTCTAGAAAATGA
21653837 TTT
1 TTT
21653840 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.42
Consensus pattern (14 bp):
TTTCTAGAAAATGA
Found at i:21653855 original size:19 final size:19
Alignment explanation
Indices: 21653831--21653868 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
21653821 GATTTCTAGA
21653831 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
21653850 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
21653869 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:21655554 original size:43 final size:43
Alignment explanation
Indices: 21655447--21655714 Score: 317
Period size: 43 Copynumber: 6.3 Consensus size: 43
21655437 TTATTTTTAT
* * **** *
21655447 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGC-ATTACGAAAA
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCAAC
* *
21655489 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCAAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCAAC
* * *
21655532 AAACGCCGCTAAAGATCATGTTCCTTAGCGGCGTTTTTTCCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCAAC
* *
21655575 AAACGCCTCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCAAC
* **
21655618 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCTTCCGC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCAAC
* * *
21655661 AAACGCCACTAAAGGTCATGTTCTTTTAGCGGC-ATTTTT-ACAC
1 AAACGCCGCTAAAGATCATGTTC-TTTAGCGGCGCTTTTTCA-AC
21655704 AAACGCCGCTA
1 AAACGCCGCTA
21655715 TTTGTTTGGT
Statistics
Matches: 198, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
42 31 0.16
43 158 0.80
44 9 0.05
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCAAC
Found at i:21655835 original size:15 final size:15
Alignment explanation
Indices: 21655810--21655848 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
21655800 GCCCTCCTGT
21655810 AGCAA-CAAATCAAA
1 AGCAACCAAATCAAA
*
21655824 AGCAACCAAATCTAA
1 AGCAACCAAATCAAA
*
21655839 ACCAACCAAA
1 AGCAACCAAA
21655849 AGCAATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.59, C:0.28, G:0.05, T:0.08
Consensus pattern (15 bp):
AGCAACCAAATCAAA
Found at i:21656256 original size:87 final size:87
Alignment explanation
Indices: 21656089--21656247 Score: 228
Period size: 87 Copynumber: 1.8 Consensus size: 87
21656079 CGCTACAGCG
* * *
21656089 TCTGCTTCTCTCGATGCCGCATCTACTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTAAAC
1 TCTGCTTCCCTCGATGCCGCATCTACTTTAAGTTGTAGCTAGAGTTCTTCATATTTCCTTTAAAC
* *
21656154 CTCTACTTCTCTCGCTGCAACC
66 CTCAACTTCGCTCGCTGCAACC
* * ** *
21656176 TCTGCTTCCCTCGTTGCCGCCTCTGGTTTAAGTTGTAGCTAGAGTTCTTCATATTTCCTTTGAAC
1 TCTGCTTCCCTCGATGCCGCATCTACTTTAAGTTGTAGCTAGAGTTCTTCATATTTCCTTTAAAC
21656241 CTCAACT
66 CTCAACT
21656248 ATGGTCGCTT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 63 1.00
ACGTcount: A:0.16, C:0.28, G:0.15, T:0.40
Consensus pattern (87 bp):
TCTGCTTCCCTCGATGCCGCATCTACTTTAAGTTGTAGCTAGAGTTCTTCATATTTCCTTTAAAC
CTCAACTTCGCTCGCTGCAACC
Found at i:21662470 original size:71 final size:71
Alignment explanation
Indices: 21662354--21662628 Score: 505
Period size: 71 Copynumber: 3.8 Consensus size: 71
21662344 NNNNNNNNNN
21662354 TTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGT
1 TTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGT
21662419 TTTTGT
66 TTTTGT
21662425 TTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGT
1 TTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGT
21662490 TTTTGT
66 TTTTGT
21662496 TTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGT
1 TTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGT
21662561 TTTTGT
66 TTTTGT
* * *
21662567 TTTTTTGTGTATTATGTAACTTATTTAATTTATATAGGTTATGTATTATTATGTAAGTTATG
1 TTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGTA-GGA-TATTATGTAAGTTATG
21662629 AATTATGTAA
Statistics
Matches: 199, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
71 181 0.91
72 2 0.01
73 16 0.08
ACGTcount: A:0.26, C:0.01, G:0.19, T:0.54
Consensus pattern (71 bp):
TTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGT
TTTTGT
Found at i:21662590 original size:9 final size:9
Alignment explanation
Indices: 21662578--21662662 Score: 68
Period size: 9 Copynumber: 9.6 Consensus size: 9
21662568 TTTTTGTGTA
*
21662578 TTATGTAAC
1 TTATGTAAG
* *
21662587 TTATTTAAT
1 TTATGTAAG
* *
21662596 TTATATAGG
1 TTATGTAAG
21662605 TTATGTATTA-
1 TTATGTA--AG
21662615 TTATGTAAG
1 TTATGTAAG
21662624 TTATG-AA-
1 TTATGTAAG
21662631 TTATGTAAG
1 TTATGTAAG
*
21662640 TTATGTAAA
1 TTATGTAAG
*
21662649 TTACGTAAG
1 TTATGTAAG
21662658 TTATG
1 TTATG
21662663 AAATTTGAAC
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
7 5 0.08
8 5 0.08
9 43 0.72
10 7 0.12
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:21662633 original size:16 final size:16
Alignment explanation
Indices: 21662614--21662664 Score: 75
Period size: 16 Copynumber: 3.1 Consensus size: 16
21662604 GTTATGTATT
21662614 ATTATGTAAGTTATGA
1 ATTATGTAAGTTATGA
21662630 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATG--A
*
21662648 ATTACGTAAGTTATGA
1 ATTATGTAAGTTATGA
21662664 A
1 A
21662665 ATTTGAACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 17 0.53
18 15 0.47
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.41
Consensus pattern (16 bp):
ATTATGTAAGTTATGA
Found at i:21662668 original size:142 final size:141
Alignment explanation
Indices: 21662364--21662668 Score: 416
Period size: 142 Copynumber: 2.1 Consensus size: 141
21662354 TTTTTTGTGT
* **
21662364 ATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGTTTTTGTTTTT
1 ATTACGTAACTTATGAAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGTTTTTGTTTTT
* *
21662429 TTGTGTATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGTTTTT
66 TTGTGTATTATGTAACTTATTTAATTTATATAGGGTAGGATATTATGTAAGTTATGTAAG-TTAT
** * **
21662494 GTTTTTTTGTGT
130 GTAGTTATGTAA
* **
21662506 ATTATGTAACTTATTTAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGTTTTTGTTTTT
1 ATTACGTAACTTATGAAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGTTTTTGTTTTT
* *
21662571 TTGTGTATTATGTAACTTATTTAATTTATATAGGTTATGTATTATTATGTAAGTTATG-AA-TTA
66 TTGTGTATTATGTAACTTATTTAATTTATATAGGGTA-GGA-TATTATGTAAGTTATGTAAGTTA
21662634 TGTAAGTTATGTAA
129 TGT-AGTTATGTAA
*
21662648 ATTACGTAAGTTATGAAATTT
1 ATTACGTAACTTATGAAATTT
21662669 GAACTTTAAA
Statistics
Matches: 147, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
141 5 0.03
142 122 0.83
143 4 0.03
144 16 0.11
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.52
Consensus pattern (141 bp):
ATTACGTAACTTATGAAATTTATGTAGGGTAGGATATTATGTAAGTTATGTAAGTTTTTGTTTTT
TTGTGTATTATGTAACTTATTTAATTTATATAGGGTAGGATATTATGTAAGTTATGTAAGTTATG
TAGTTATGTAA
Found at i:21663407 original size:14 final size:14
Alignment explanation
Indices: 21663388--21663417 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
21663378 CTCGAACAGC
21663388 AAGATGATTAACTA
1 AAGATGATTAACTA
21663402 AAGATGATTAACTA
1 AAGATGATTAACTA
21663416 AA
1 AA
21663418 AAACCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (14 bp):
AAGATGATTAACTA
Found at i:21665966 original size:15 final size:14
Alignment explanation
Indices: 21665946--21665977 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
21665936 CACTAACATC
21665946 TAACCCCTAAACCCT
1 TAACCCCTAAA-CCT
21665961 TAACCCCTAAACCT
1 TAACCCCTAAACCT
21665975 TAA
1 TAA
21665978 ATCCTGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.22
Consensus pattern (14 bp):
TAACCCCTAAACCT
Found at i:21666186 original size:15 final size:15
Alignment explanation
Indices: 21666166--21666252 Score: 65
Period size: 15 Copynumber: 5.9 Consensus size: 15
21666156 ATTAGCACAT
21666166 CTAACCCCTAAACCC
1 CTAACCCCTAAACCC
21666181 CTAACCCTCT-AACCC
1 CTAACCC-CTAAACCC
* * *
21666196 CTAAACCTTAAATCC
1 CTAACCCCTAAACCC
*
21666211 C-AACCCCT-AATCC
1 CTAACCCCTAAACCC
* *
21666224 ATAATCCCTAAACCC
1 CTAACCCCTAAACCC
*
21666239 AT-ACTCCCTAAACC
1 CTAAC-CCCTAAACC
21666253 TTAAAATATG
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
13 5 0.09
14 13 0.22
15 38 0.66
16 2 0.03
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.20
Consensus pattern (15 bp):
CTAACCCCTAAACCC
Found at i:21666202 original size:8 final size:7
Alignment explanation
Indices: 21666166--21666199 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
21666156 ATTAGCACAT
21666166 CTAACCC
1 CTAACCC
21666173 CTAAACCC
1 CT-AACCC
21666181 CTAACCC
1 CTAACCC
21666188 TCTAACCC
1 -CTAACCC
21666196 CTAA
1 CTAA
21666200 ACCTTAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAACCC
Found at i:21666760 original size:114 final size:113
Alignment explanation
Indices: 21666560--21666868 Score: 429
Period size: 114 Copynumber: 2.7 Consensus size: 113
21666550 CAGATTTTTG
* * * *
21666560 GCCGCTAAATTCCCGAAAGCTCAGAAAACAGTGTCGTTACGCTTAGGTTTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGCGCTTAGG-TTTTTTGCGGCGCTTTC
* * * *
21666625 TAAAAAACGCAGTTAAAGCCCTGAGCGTTAGCGGCGCTTTCTTAAAAAC
65 TCAAAAACGCAGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTAAAAAC
* *
21666674 GCCGCTAAATCCCCCGAAAGCTTAGAAAACGGCGTCGTTGTGCTTAGGTTTTTTGCGGCGCTTTC
1 GCCGCTAAAT-CCCCGAAAGCTCAGAAAACGGCGTCGTTGCGCTTAGGTTTTTTGCGGCGCTTTC
*
21666739 TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTAAAAAC
65 TCAAAAACGCAGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTAAAAAC
* * * * ** *
21666788 GCCGCTAAATCCCCGAAAGCTCACAAAACGACATCGTTGGGCTTATTTTTTTTGCGGCACTTTCT
1 GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGCGCTTAGGTTTTTTGCGGCGCTTTCT
*
21666853 CAAAAACGCTGCTAAA
66 CAAAAACGCAGCTAAA
21666869 TCCCCGAAAG
Statistics
Matches: 174, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
113 62 0.36
114 81 0.47
115 31 0.18
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (113 bp):
GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGCGCTTAGGTTTTTTGCGGCGCTTTCT
CAAAAACGCAGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTAAAAAC
Found at i:21666858 original size:72 final size:72
Alignment explanation
Indices: 21666769--21667097 Score: 372
Period size: 72 Copynumber: 4.4 Consensus size: 72
21666759 CTGAGCATTA
* * *
21666769 GCGGCGCTTTC-CTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGACATCGTTGGGCTTA
1 GCGGCGCTTTCTC-AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA
21666833 TTTTTTTT
65 TTTTTTTT
* * * *
21666841 GCGGCACTTTCTCAAAAACGCTGCTAAATCCCCGAAAGCTCAGAAAACTGTGTCGTTGGGCTTAT
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA-
21666906 GTTTTTTTCACT
65 -TTTTTTT---T
* *
21666918 GAGCATTAGTGGCGCTTTCTTAAAAACACCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTT
1 --GC------GGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTT
21666983 GGGCTTATGTTTTTTT
58 GGGCTTAT-TTTTTTT
* * *
21666999 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTTAGAAAACGGTGTCGTTGGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAT
*
21667064 GTTTTTT
66 TTTTTTT
** *
21667071 GCGGCGCTTTCTGGAAAACGACGCTAA
1 GCGGCGCTTTCTCAAAAACGCCGCTAA
21667098 TGCTTATTTT
Statistics
Matches: 220, Mismatches: 22, Indels: 30
0.81 0.08 0.11
Matches are distributed among these distances:
72 85 0.39
73 59 0.27
74 7 0.03
77 1 0.00
79 4 0.02
81 1 0.00
83 1 0.00
84 6 0.03
85 56 0.25
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (72 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAT
TTTTTTT
Found at i:21667047 original size:73 final size:72
Alignment explanation
Indices: 21666928--21667097 Score: 259
Period size: 73 Copynumber: 2.3 Consensus size: 72
21666918 GAGCATTAGT
* * *
21666928 GGCGCTTTCTTAAAAACACCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTATGT
1 GGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA-GG
21666993 TTTTTTGC
65 TTTTTTGC
* *
21667001 GGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTTAGAAAACGGTGTCGTTGGGCTTAGGT
1 GGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
21667066 TTTTTGC
66 TTTTTGC
** *
21667073 GGCGCTTTCTGGAAAACGACGCTAA
1 GGCGCTTTCTCAAAAACGCCGCTAA
21667098 TGCTTATTTT
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 31 0.35
73 58 0.65
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (72 bp):
GGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT
TTTTTGC
Found at i:21667069 original size:157 final size:157
Alignment explanation
Indices: 21666759--21667070 Score: 509
Period size: 157 Copynumber: 2.0 Consensus size: 157
21666749 CGCTAAAGCC
*
21666759 CTGAGCATTAGCGGCGCTTTCCTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGACATCG
1 CTGAGCATTAGCGGCGCTTTCCTAAAAACACCGCTAAATCCCCGAAAGCTCACAAAACGACATCG
*
21666824 TTGGGCTTATTTTTTTTGCGGCACTTTCTCAAAAACGCTGCTAAATCCCCGAAAGCTCAGAAAAC
66 TTGGGCTTATTTTTTTTGCGGCACTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
* *
21666889 TGTGTCGTTGGGCTTATGTTTTTTTCA
131 GGTGTCGTTGGGCTTATGGTTTTTTCA
* * * * *
21666916 CTGAGCATTAGTGGCGCTTTCTTAAAAACACCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCG
1 CTGAGCATTAGCGGCGCTTTCCTAAAAACACCGCTAAATCCCCGAAAGCTCACAAAACGACATCG
* *
21666981 TTGGGCTTATGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTTAGAAAA
66 TTGGGCTTAT-TTTTTTTGCGGCACTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAA
21667046 CGGTGTCGTTGGGCTTA-GGTTTTTT
130 CGGTGTCGTTGGGCTTATGGTTTTTT
21667071 GCGGCGCTTT
Statistics
Matches: 143, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
157 76 0.53
158 67 0.47
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.29
Consensus pattern (157 bp):
CTGAGCATTAGCGGCGCTTTCCTAAAAACACCGCTAAATCCCCGAAAGCTCACAAAACGACATCG
TTGGGCTTATTTTTTTTGCGGCACTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
GGTGTCGTTGGGCTTATGGTTTTTTCA
Found at i:21668443 original size:18 final size:18
Alignment explanation
Indices: 21668403--21668445 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
21668393 AATTTAAACC
21668403 TATAATAAAATTGTTAAA
1 TATAATAAAATTGTTAAA
* *
21668421 AATAATAATATTG-TAATA
1 TATAATAAAATTGTTAA-A
21668439 TATAATA
1 TATAATA
21668446 TATGTTAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (18 bp):
TATAATAAAATTGTTAAA
Found at i:21668950 original size:4 final size:4
Alignment explanation
Indices: 21668934--21668975 Score: 77
Period size: 4 Copynumber: 10.8 Consensus size: 4
21668924 CAGTTCGCTT
21668934 TGTC TGT- TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGT
1 TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGT
21668976 TTGTTTGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 3 0.08
4 34 0.92
ACGTcount: A:0.00, C:0.21, G:0.26, T:0.52
Consensus pattern (4 bp):
TGTC
Found at i:21669468 original size:16 final size:18
Alignment explanation
Indices: 21669437--21669475 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
21669427 GATTATGTGA
21669437 TTGTGTCAACATTTATGC
1 TTGTGTCAACATTTATGC
*
21669455 TTGTG-CAA-ATTTATGT
1 TTGTGTCAACATTTATGC
21669471 TTGTG
1 TTGTG
21669476 GAGAATGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
17 3 0.15
18 5 0.25
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.49
Consensus pattern (18 bp):
TTGTGTCAACATTTATGC
Found at i:21671625 original size:26 final size:26
Alignment explanation
Indices: 21671596--21671647 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21671586 TTTAGTTTCC
**
21671596 TTAATTATAGTTTCTTTTTCTACAAG
1 TTAATTATAGTTTCTTAGTCTACAAG
*
21671622 TTAATTTTAGTTTCTTAGTCTACAAG
1 TTAATTATAGTTTCTTAGTCTACAAG
21671648 AATAAAATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.52
Consensus pattern (26 bp):
TTAATTATAGTTTCTTAGTCTACAAG
Found at i:21678493 original size:32 final size:32
Alignment explanation
Indices: 21678447--21678511 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
21678437 TAAGGGGGAG
21678447 TGTTGAAATCCCTATAATTAAGGATAGAAATC
1 TGTTGAAATCCCTATAATTAAGGATAGAAATC
* *
21678479 TGTTGGAATTCCTATAATTAAGGATAGAAATC
1 TGTTGAAATCCCTATAATTAAGGATAGAAATC
21678511 T
1 T
21678512 TACCTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (32 bp):
TGTTGAAATCCCTATAATTAAGGATAGAAATC
Found at i:21683478 original size:19 final size:18
Alignment explanation
Indices: 21683434--21683515 Score: 85
Period size: 19 Copynumber: 4.3 Consensus size: 18
21683424 AATTACAAAA
21683434 AAAATATTCAAAATAAATTTT
1 AAAA-ATTCAAAAT--ATTTT
21683455 AAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTT-T
* *
21683474 AAAAATTTAAAA-ATTAT
1 AAAAATTCAAAATATTTT
*
21683491 AAAAATTCTAAAAAATTTT
1 AAAAATTC-AAAATATTTT
21683510 AAAAAT
1 AAAAAT
21683516 ATATATAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
17 8 0.15
18 11 0.20
19 22 0.41
20 9 0.17
21 4 0.07
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAAATTCAAAATATTTT
Found at i:21683495 original size:10 final size:9
Alignment explanation
Indices: 21683448--21683525 Score: 61
Period size: 9 Copynumber: 8.3 Consensus size: 9
21683438 TATTCAAAAT
*
21683448 AAATTTTAA
1 AAATTATAA
21683457 AAATTCA-AA
1 AAATT-ATAA
*
21683466 ATATTTATAA
1 A-AATTATAA
21683476 AAATT-TAA
1 AAATTATAA
21683484 AAATTATAA
1 AAATTATAA
*
21683493 AAATTCTAAA
1 AAATTAT-AA
*
21683503 AAATTTTAA
1 AAATTATAA
21683512 AAATATATATA
1 AAAT-TATA-A
21683523 AAA
1 AAA
21683526 AAAGGTTCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
8 8 0.14
9 27 0.48
10 17 0.30
11 4 0.07
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (9 bp):
AAATTATAA
Found at i:21683518 original size:27 final size:28
Alignment explanation
Indices: 21683434--21683518 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 28
21683424 AATTACAAAA
*
21683434 AAAATATTCAAAATAAATTTTAAAAAT-T
1 AAAATATTCTAAA-AAATTTTAAAAATAT
21683462 CAAAATATT-TATAAAAA-TTTAAAAATTAT
1 -AAAATATTCTA-AAAAATTTTAAAAA-TAT
21683491 AAAA-ATTCTAAAAAATTTTAAAAATAT
1 AAAATATTCTAAAAAATTTTAAAAATAT
21683518 A
1 A
21683519 TATAAAAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
27 20 0.40
28 19 0.38
29 11 0.22
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (28 bp):
AAAATATTCTAAAAAATTTTAAAAATAT
Found at i:21683899 original size:16 final size:16
Alignment explanation
Indices: 21683878--21683912 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
21683868 TCGATCGAAC
21683878 TCTCACCCTGATTACA
1 TCTCACCCTGATTACA
*
21683894 TCTCACGCTGATTACA
1 TCTCACCCTGATTACA
21683910 TCT
1 TCT
21683913 AAGGTCAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.23, C:0.34, G:0.09, T:0.34
Consensus pattern (16 bp):
TCTCACCCTGATTACA
Found at i:21688279 original size:8 final size:8
Alignment explanation
Indices: 21688266--21688292 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
21688256 TTAACTAGTT
21688266 TAATTAAC
1 TAATTAAC
21688274 TAATTAAC
1 TAATTAAC
21688282 TAATTAAC
1 TAATTAAC
21688290 TAA
1 TAA
21688293 CTAGACCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (8 bp):
TAATTAAC
Found at i:21691143 original size:13 final size:13
Alignment explanation
Indices: 21691125--21691150 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21691115 TAGTTTATCG
21691125 AAATTATTATAAT
1 AAATTATTATAAT
21691138 AAATTATTATAAT
1 AAATTATTATAAT
21691151 TATGATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:21693256 original size:13 final size:13
Alignment explanation
Indices: 21693227--21693303 Score: 64
Period size: 13 Copynumber: 5.9 Consensus size: 13
21693217 CAAGCATGGA
**
21693227 GCTAAGTGATATG
1 GCTAAGTGATACC
*
21693240 GCTAAGTGGTACC
1 GCTAAGTGATACC
* * *
21693253 GCTAAGGGGTGCC
1 GCTAAGTGATACC
* *
21693266 ACTAAGTGATACT
1 GCTAAGTGATACC
*
21693279 GCTAAGTGACACC
1 GCTAAGTGATACC
*
21693292 GCTAAGTAATAC
1 GCTAAGTGATAC
21693304 TGCGAAATGG
Statistics
Matches: 49, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (13 bp):
GCTAAGTGATACC
Found at i:21699101 original size:29 final size:30
Alignment explanation
Indices: 21699059--21699139 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 30
21699049 GAATTTGATC
* **
21699059 AAATCAAAATTTCATGTATAAAATTGTACA-
1 AAATC-AAAGTTCATGTATAAAATTACACAT
*
21699089 AAATCAAAGTTCATGTATACAATTACACATT
1 AAATCAAAGTTCATGTATAAAATTACACA-T
* *
21699120 AAACCATAGTTCATGTATAA
1 AAATCAAAGTTCATGTATAA
21699140 TTTTGAGATA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 20 0.48
30 5 0.12
31 17 0.40
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTACACAT
Found at i:21700255 original size:7 final size:7
Alignment explanation
Indices: 21700243--21700281 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
21700233 TTTTCTGATT
21700243 CTTTATC
1 CTTTATC
21700250 CTTTATC
1 CTTTATC
21700257 CTTTATC
1 CTTTATC
21700264 CTTTATC
1 CTTTATC
21700271 CTTTATC
1 CTTTATC
21700278 CTTT
1 CTTT
21700282 TCTTTTTGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.13, C:0.28, G:0.00, T:0.59
Consensus pattern (7 bp):
CTTTATC
Found at i:21700425 original size:32 final size:30
Alignment explanation
Indices: 21700389--21700493 Score: 102
Period size: 32 Copynumber: 3.3 Consensus size: 30
21700379 TGAAATGTAC
*
21700389 ATTTTAAATGTTTTATAATATTATTTTTTAAA
1 ATTTTAAATGTTTTTTAA-ATTA-TTTTTAAA
*
21700421 ATTTTAAATATATATTTTCAAATTATTTTTAAA
1 ATTTTAAATGT-T-TTTT-AAATTATTTTTAAA
* * *
21700454 GATATTCAAACGTTTTTTAAATTATATTTAAA
1 -AT-TTTAAATGTTTTTTAAATTATTTTTAAA
21700486 ATTTTAAA
1 ATTTTAAA
21700494 AATTAATGTT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
30 5 0.08
31 2 0.03
32 23 0.38
33 13 0.21
34 10 0.16
35 8 0.13
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (30 bp):
ATTTTAAATGTTTTTTAAATTATTTTTAAA
Found at i:21700430 original size:22 final size:25
Alignment explanation
Indices: 21700390--21700438 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
21700380 GAAATGTACA
*
21700390 TTTTAAATGTTTTATAATAT-TATT
1 TTTTAAATATTTTATAATATATATT
21700414 TTTTAAA-ATTTTA-AATATATATT
1 TTTTAAATATTTTATAATATATATT
21700437 TT
1 TT
21700439 CAAATTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 11 0.48
24 7 0.30
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (25 bp):
TTTTAAATATTTTATAATATATATT
Found at i:21700443 original size:21 final size:23
Alignment explanation
Indices: 21700389--21700444 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
21700379 TGAAATGTAC
*
21700389 ATTTTAAATGTTTTATAATATTAT
1 ATTTTAAA-ATTTTATAATATTAT
*
21700413 TTTTTAAAATTTTA-AATA-TAT
1 ATTTTAAAATTTTATAATATTAT
*
21700434 ATTTTCAAATT
1 ATTTTAAAATT
21700445 ATTTTTAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 12 0.43
22 4 0.14
23 5 0.18
24 7 0.25
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
ATTTTAAAATTTTATAATATTAT
Found at i:21700490 original size:21 final size:21
Alignment explanation
Indices: 21700415--21700490 Score: 50
Period size: 21 Copynumber: 3.5 Consensus size: 21
21700405 AATATTATTT
21700415 TTTAAAA--TTTTAAATATATA
1 TTTAAAATTTTTTAAAT-TATA
* *
21700435 TTTTCAAATTATTTTTAAA-GATA
1 -TTT-AAAAT-TTTTTAAATTATA
* *
21700458 TTCAAACGTTTTTTAAATTATA
1 TTTAAA-ATTTTTTAAATTATA
21700480 TTTAAAATTTT
1 TTTAAAATTTT
21700491 AAAAATTAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
21 18 0.43
22 14 0.33
23 3 0.07
25 7 0.17
ACGTcount: A:0.41, C:0.04, G:0.03, T:0.53
Consensus pattern (21 bp):
TTTAAAATTTTTTAAATTATA
Found at i:21706469 original size:21 final size:21
Alignment explanation
Indices: 21706445--21706498 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
21706435 TGACCAATTA
21706445 TAATATATATTTTTAATTTTC
1 TAATATATATTTTTAATTTTC
* * *
21706466 TAATATAAATTTTTACTTTTT
1 TAATATATATTTTTAATTTTC
21706487 TAATATATATTT
1 TAATATATATTT
21706499 AAAAAAGTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (21 bp):
TAATATATATTTTTAATTTTC
Found at i:21706696 original size:21 final size:21
Alignment explanation
Indices: 21706661--21706722 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 21
21706651 TAAAACCAAT
* *
21706661 AATAAAAAAA-ATAAAAGACA
1 AATAAAAAAACTTAAAAAACA
*
21706681 AATAAAAAAACTTAAAAAATA
1 AATAAAAAAACTTAAAAAACA
21706702 AATAAAGAAGAAACTTAAAAA
1 AAT-AA-AA-AAACTTAAAAA
21706723 GAAAAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.29
21 10 0.29
22 2 0.06
23 2 0.06
24 11 0.31
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.15
Consensus pattern (21 bp):
AATAAAAAAACTTAAAAAACA
Found at i:21708312 original size:30 final size:30
Alignment explanation
Indices: 21708278--21708347 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
21708268 TTAAAATTTT
* * *
21708278 TCTTAACAATAATTCTAAAAAAATAAAAAA
1 TCTTAAAAATAAATATAAAAAAATAAAAAA
*
21708308 TCTTAAAAATAAATATAAAATAATAAAAATA
1 TCTTAAAAATAAATATAAAAAAATAAAAA-A
*
21708339 TATTAAAAA
1 TCTTAAAAA
21708348 GTATGTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 25 0.74
31 9 0.26
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (30 bp):
TCTTAAAAATAAATATAAAAAAATAAAAAA
Found at i:21708327 original size:20 final size:20
Alignment explanation
Indices: 21708294--21708338 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
21708284 CAATAATTCT
**
21708294 AAAA-AAATAAAAAATCTTA
1 AAAATAAATAAAAAATAATA
*
21708313 AAAATAAATATAAAATAATA
1 AAAATAAATAAAAAATAATA
21708333 AAAATA
1 AAAATA
21708339 TATTAAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (20 bp):
AAAATAAATAAAAAATAATA
Found at i:21708398 original size:15 final size:15
Alignment explanation
Indices: 21708360--21708401 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
21708350 ATGTTAAACT
21708360 ATTTTTAAAAATAAA
1 ATTTTTAAAAATAAA
* *
21708375 AATTATAAATAA-AAA
1 ATTTTTAAA-AATAAA
21708390 ATTTTTAAAAAT
1 ATTTTTAAAAAT
21708402 TATAAATACA
Statistics
Matches: 21, Mismatches: 4, Indels: 4
0.72 0.14 0.14
Matches are distributed among these distances:
14 2 0.10
15 17 0.81
16 2 0.10
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTTTTAAAAATAAA
Found at i:21714564 original size:17 final size:17
Alignment explanation
Indices: 21714539--21714638 Score: 69
Period size: 17 Copynumber: 5.6 Consensus size: 17
21714529 AATCTTAGAG
21714539 TTCTAATTGTATACAAC
1 TTCTAATTGTATACAAC
* * *
21714556 TTTTAATTGTGT-CTTAGAG
1 TTCTAATTGTATAC--A-AC
*
21714575 TTCTAATTGTATATAAC
1 TTCTAATTGTATACAAC
* *
21714592 TTCTAATTGTGT-CTTAGAG
1 TTCTAATTGTATAC--A-AC
21714611 TTCTAATTGTATACAAC
1 TTCTAATTGTATACAAC
*
21714628 TTTTAATTGTA
1 TTCTAATTGTA
21714639 GCCCTTGATG
Statistics
Matches: 62, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
16 1 0.02
17 33 0.53
18 4 0.06
19 23 0.37
20 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.48
Consensus pattern (17 bp):
TTCTAATTGTATACAAC
Found at i:21714578 original size:36 final size:36
Alignment explanation
Indices: 21714531--21714637 Score: 196
Period size: 36 Copynumber: 3.0 Consensus size: 36
21714521 GATTATGTAA
21714531 TCTTAGAGTTCTAATTGTATACAACTTTTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAACTTTTAATTGTG
* *
21714567 TCTTAGAGTTCTAATTGTATATAACTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAACTTTTAATTGTG
21714603 TCTTAGAGTTCTAATTGTATACAACTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAACTTTTAATTGT
21714638 AGCCCTTGAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 67 1.00
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAACTTTTAATTGTG
Found at i:21714583 original size:19 final size:19
Alignment explanation
Indices: 21714559--21714620 Score: 83
Period size: 19 Copynumber: 3.4 Consensus size: 19
21714549 ATACAACTTT
21714559 TAATTGTGTCTTAGAGTTC
1 TAATTGTGTCTTAGAGTTC
* * *
21714578 TAATTGTAT-ATA-ACTTC
1 TAATTGTGTCTTAGAGTTC
21714595 TAATTGTGTCTTAGAGTTC
1 TAATTGTGTCTTAGAGTTC
21714614 TAATTGT
1 TAATTGT
21714621 ATACAACTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 12 0.34
18 4 0.11
19 19 0.54
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.48
Consensus pattern (19 bp):
TAATTGTGTCTTAGAGTTC
Found at i:21715916 original size:6 final size:6
Alignment explanation
Indices: 21715905--21715959 Score: 76
Period size: 6 Copynumber: 9.3 Consensus size: 6
21715895 CAAAATAGTT
* * *
21715905 CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCCCA CCCCCA CCCCCA
1 CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA
21715953 CCC-CA CC
1 CCCTCA CC
21715960 GCAAATACGA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
5 4 0.08
6 44 0.92
ACGTcount: A:0.16, C:0.75, G:0.00, T:0.09
Consensus pattern (6 bp):
CCCTCA
Found at i:21719253 original size:20 final size:20
Alignment explanation
Indices: 21719228--21719267 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
21719218 GATTAATTTT
21719228 TTTTATGAACTTTTTAAAAA
1 TTTTATGAACTTTTTAAAAA
** *
21719248 TTTTATTTATTTTTTAAAAA
1 TTTTATGAACTTTTTAAAAA
21719268 AAGTTTGAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTTATGAACTTTTTAAAAA
Found at i:21738452 original size:22 final size:22
Alignment explanation
Indices: 21738427--21738470 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
21738417 AAATCCCAAA
21738427 TTTTCTTCCTTTCCTTCCCTTT
1 TTTTCTTCCTTTCCTTCCCTTT
* * * *
21738449 TTTTTTTCTTTTTCTTTCCTTT
1 TTTTCTTCCTTTCCTTCCCTTT
21738471 CCTTCTTTCC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTCTTCCTTTCCTTCCCTTT
Found at i:21738714 original size:14 final size:13
Alignment explanation
Indices: 21738688--21738738 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
21738678 ATTTATTTGA
21738688 AATATAATAATAT
1 AATATAATAATAT
21738701 AATATAATTAATAT
1 AATATAA-TAATAT
* *
21738715 AAT-TTACAATAT
1 AATATAATAATAT
*
21738727 AATAAAATAATA
1 AATATAATAATA
21738739 ATATACTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 8 0.26
13 14 0.45
14 9 0.29
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
AATATAATAATAT
Found at i:21744837 original size:12 final size:12
Alignment explanation
Indices: 21744808--21744841 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
21744798 TGACCACGGA
21744808 AGAAAGGAAAAT
1 AGAAAGGAAAAT
*
21744820 -GAAAGGAAACT
1 AGAAAGGAAAAT
21744831 AGAAAGGAAAA
1 AGAAAGGAAAA
21744842 AGAGAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.65, C:0.03, G:0.26, T:0.06
Consensus pattern (12 bp):
AGAAAGGAAAAT
Found at i:21749293 original size:40 final size:40
Alignment explanation
Indices: 21749249--21749399 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
21749239 TCCATAATAT
*
21749249 TGGCAGTTTATCTCCATTACTAGTGGCTTGTCCACATTTC
1 TGGCAGTTTATCTCCATTACTGGTGGCTTGTCCACATTTC
*
21749289 TGGCAGTTTATCTACATTACTGGTGGCTTGTCCACATTAT-
1 TGGCAGTTTATCTCCATTACTGGTGGCTTGTCCACATT-TC
* * * * * *
21749329 TAGCAGCTTGTCTGCAATT-CTGGTGGTTTGTCCATATTTC
1 TGGCAGTTTATCT-CCATTACTGGTGGCTTGTCCACATTTC
*
21749369 TGGCAGTTTATCTGCATTACTGGTGGCTTGT
1 TGGCAGTTTATCTCCATTACTGGTGGCTTGT
21749400 TCGCAAACTA
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 4 0.04
40 84 0.91
41 4 0.04
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.41
Consensus pattern (40 bp):
TGGCAGTTTATCTCCATTACTGGTGGCTTGTCCACATTTC
Found at i:21749325 original size:20 final size:20
Alignment explanation
Indices: 21749263--21749327 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
21749253 AGTTTATCTC
*
21749263 CATTACTAGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCCA
* ** * * *
21749283 CATTTCTGGCAGTTTATCTA
1 CATTACTGGTGGCTTGTCCA
21749303 CATTACTGGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCCA
21749323 CATTA
1 CATTA
21749328 TTAGCAGCTT
Statistics
Matches: 32, Mismatches: 13, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (20 bp):
CATTACTGGTGGCTTGTCCA
Found at i:21758033 original size:29 final size:29
Alignment explanation
Indices: 21757989--21758054 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
21757979 ATTTGACCTT
* *
21757989 ATTGATTCTTTTTAATAATATAGAGACTAA
1 ATTGA-TCTATTTAATAATAGAGAGACTAA
*
21758019 ATTGATCTATTTAATAATAGAGGGACTAA
1 ATTGATCTATTTAATAATAGAGAGACTAA
*
21758048 TTTGATC
1 ATTGATC
21758055 CGGTCTCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 27 0.84
30 5 0.16
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.41
Consensus pattern (29 bp):
ATTGATCTATTTAATAATAGAGAGACTAA
Found at i:21761658 original size:20 final size:20
Alignment explanation
Indices: 21761633--21761675 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
21761623 ATCATAAAAA
21761633 TATTTTTTGATTATAGGATT
1 TATTTTTTGATTATAGGATT
21761653 TATTTTTTGATTATAGGATT
1 TATTTTTTGATTATAGGATT
21761673 TAT
1 TAT
21761676 CACTCACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (20 bp):
TATTTTTTGATTATAGGATT
Found at i:21765033 original size:29 final size:29
Alignment explanation
Indices: 21764973--21765032 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
21764963 TATATATTCT
*
21764973 AAACCTAATCTAAAAATGAAAAGAAAATA
1 AAACCTAACCTAAAAATGAAAAGAAAATA
* * *
21765002 AAACGTAACCTAAAACTGAGAA-AAAATA
1 AAACCTAACCTAAAAATGAAAAGAAAATA
21765030 AAA
1 AAA
21765033 AGAAATGTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.65, C:0.12, G:0.08, T:0.15
Consensus pattern (29 bp):
AAACCTAACCTAAAAATGAAAAGAAAATA
Found at i:21768269 original size:20 final size:20
Alignment explanation
Indices: 21768235--21768287 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
21768225 AAGCCCCATG
* **
21768235 GTATTGATA-TTTTACACGA
1 GTATCGATATTTTTACAAAA
21768254 GTATCGATATTTTTACAAAA
1 GTATCGATATTTTTACAAAA
*
21768274 GTACCGATATTTTT
1 GTATCGATATTTTT
21768288 TAGTTGGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 8 0.28
20 21 0.72
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.43
Consensus pattern (20 bp):
GTATCGATATTTTTACAAAA
Found at i:21780685 original size:19 final size:19
Alignment explanation
Indices: 21780647--21780685 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
21780637 TTTAAGGAAA
*
21780647 ATGGTTACATAATTTGCAT
1 ATGGTTACATAATATGCAT
21780666 ATGGTTAGCATAATAT-CAT
1 ATGGTTA-CATAATATGCAT
21780685 A
1 A
21780686 AAAGTAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGGTTACATAATATGCAT
Found at i:21783897 original size:25 final size:26
Alignment explanation
Indices: 21783863--21783929 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
21783853 CCTTTTCATA
*
21783863 TATGCTCACATGAGCTGTG-AATAAG
1 TATGCTCACACGAGCTGTGAAATAAG
*
21783888 TATGCTCACACGAGCTGTGAAATGAG
1 TATGCTCACACGAGCTGTGAAATAAG
*
21783914 TCTGCTCACACGAGCT
1 TATGCTCACACGAGCT
21783930 TTGGTTCGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
25 18 0.47
26 20 0.53
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
TATGCTCACACGAGCTGTGAAATAAG
Found at i:21797845 original size:18 final size:18
Alignment explanation
Indices: 21797806--21797846 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
21797796 TGAAGTTCAG
* *
21797806 TTTTTAGATTTTTACAGG
1 TTTTTAGATTTTAACAGA
*
21797824 TTTTTAGATTTTAAGAGA
1 TTTTTAGATTTTAACAGA
21797842 TTTTT
1 TTTTT
21797847 TATAAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.59
Consensus pattern (18 bp):
TTTTTAGATTTTAACAGA
Found at i:21798526 original size:10 final size:10
Alignment explanation
Indices: 21798484--21798555 Score: 53
Period size: 10 Copynumber: 7.3 Consensus size: 10
21798474 ACTTCATACT
21798484 ATTTTTTA-A
1 ATTTTTTATA
*
21798493 ACTTTTTATAA
1 ATTTTTTAT-A
21798504 ATTTTTTATA
1 ATTTTTTATA
21798514 ATTTTTT-TGA
1 ATTTTTTAT-A
**
21798524 ATTTTAAATA
1 ATTTTTTATA
*
21798534 TTCTTTTTAT-
1 AT-TTTTTATA
21798544 A-TTTTTATA
1 ATTTTTTATA
21798553 ATT
1 ATT
21798556 ATTTGTTGAC
Statistics
Matches: 48, Mismatches: 8, Indels: 13
0.70 0.12 0.19
Matches are distributed among these distances:
8 7 0.15
9 9 0.19
10 17 0.35
11 15 0.31
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:21801163 original size:43 final size:42
Alignment explanation
Indices: 21801062--21801306 Score: 420
Period size: 43 Copynumber: 5.8 Consensus size: 42
21801052 GTTTACAAAC
* *
21801062 AAAAATGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
21801104 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAA
1 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAG-AA
21801147 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAA
1 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAG-AA
21801190 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
* *
21801232 AAAAACGCCACTAAAAACCATGTTCTTTAGCGGCGCTTAG-A
1 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
*
21801273 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
1 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGC
21801307 ACTTTTATAC
Statistics
Matches: 196, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
41 33 0.17
42 78 0.40
43 85 0.43
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (42 bp):
AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
Done.