Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 67 of 141
Found at i:21801165 original size:85 final size:84
Alignment explanation
Indices: 21801062--21801306 Score: 420
Period size: 85 Copynumber: 2.9 Consensus size: 84
21801052 GTTTACAAAC
* *
21801062 AAAAATGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCTCTAAAGACCATGT
1 AAAAACGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCTCTAAAGACCATGT
21801127 TCTTTAGCGGCGCTTAGAAA
66 TCTTTAGCGGCGCTTAG-AA
*
21801147 AAAAACGCCTCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAAACGCCTCTAAAGACCATG
1 AAAAACGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAG-AAAAAAACGCCTCTAAAGACCATG
21801212 TTCTTTAGCGGCGCTTAGAA
65 TTCTTTAGCGGCGCTTAGAA
* *
21801232 AAAAACGCCACTAAAAACCATGTTCTTTAGCGGCGCTTAG-AAAAAACGCCGCTAAAGACCATGT
1 AAAAACGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCTCTAAAGACCATGT
21801296 TCTTTAGCGGC
66 TCTTTAGCGGC
21801307 ACTTTTATAC
Statistics
Matches: 154, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
83 34 0.22
85 78 0.51
86 42 0.27
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (84 bp):
AAAAACGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCTCTAAAGACCATGT
TCTTTAGCGGCGCTTAGAA
Found at i:21810926 original size:44 final size:44
Alignment explanation
Indices: 21810841--21810927 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
21810831 GAAATACATT
* **
21810841 TTTGCGGCGTTTTAAGCAAAGCGCCACAAAATATAGGTCAAAAA
1 TTTGCGGCGTTTTAAACAAAGCGCCACAAAATATAACTCAAAAA
* * * * *
21810885 TTTGCGGTGTTTTAAACTAAGTGCCACTAACTATAACTCAAAA
1 TTTGCGGCGTTTTAAACAAAGCGCCACAAAATATAACTCAAAA
21810928 CGCGGTCGGT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (44 bp):
TTTGCGGCGTTTTAAACAAAGCGCCACAAAATATAACTCAAAAA
Found at i:21812820 original size:18 final size:18
Alignment explanation
Indices: 21812797--21812832 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
21812787 ATTGAATTTT
21812797 AATT-AATATAAATAAACA
1 AATTAAATATAAA-AAACA
21812815 AATTAAATATAAAAAACA
1 AATTAAATATAAAAAACA
21812833 TATAAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (18 bp):
AATTAAATATAAAAAACA
Found at i:21812840 original size:18 final size:19
Alignment explanation
Indices: 21812801--21812840 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
21812791 AATTTTAATT
*
21812801 AATATAAATAAACAAATTA
1 AATATAAATAAACAAATAA
*
21812820 AATATAAA-AAACATATAA
1 AATATAAATAAACAAATAA
21812838 AAT
1 AAT
21812841 GATTTTGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (19 bp):
AATATAAATAAACAAATAA
Found at i:21813085 original size:38 final size:38
Alignment explanation
Indices: 21813028--21813100 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 38
21813018 TTTGGTTAAG
* *
21813028 ATACTTTGCGGCGCGTTTCA-CAAATGCCGCTAATGAT
1 ATACTTTGCGGCGCGTTTCATCAAACGCCACTAATGAT
**
21813065 ATACTTTAGCGGCGTTTTTCATCAAACGCCACTAAT
1 ATACTTT-GCGGCGCGTTTCATCAAACGCCACTAAT
21813101 TCTAATACAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 7 0.23
38 11 0.37
39 12 0.40
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (38 bp):
ATACTTTGCGGCGCGTTTCATCAAACGCCACTAATGAT
Found at i:21813456 original size:113 final size:113
Alignment explanation
Indices: 21812976--21813479 Score: 405
Period size: 114 Copynumber: 4.4 Consensus size: 113
21812966 TTTCCCATTT
** * *
21812976 GCGCCACTAATTCCAGCATACATCAAGAACTAAACTCTGTGTTTTGGTTAAGATAC-TTTGCGGC
1 GCGCCACTAATTCCAATATACATCAAG-ACCAAACTCTGCGTTTTGGTTAAGAT-CTTTTGCGGC
* * * * *
21813040 GCGTTTCACAAATGC-C-GCTAATGA-TATACTTTAGCGGCGTTTTTCATCAA
64 GC-TTCCACTAA-GCGCTGCTAATAACTATACATTACCGGCGTTTTTCAT-AA
* * * * * *
21813090 ACGCCACTAATTCTAATACACCTCAAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGAGGCGC
1 GCGCCACTAATTCCAATATACATCAAGACCAAACTCTGCGTTTTGGTTAAGATCTTTTGCGGCGC
* * * * * * *
21813155 TTACCACCAAACGCTGCT-ATAACTATCCTTTACTGGCGTTTTCCTTAA
66 TT-CCACTAAGCGCTGCTAATAACTATACATTACCGGCGTTTTTCATAA
* ** * * * * *
21813203 ACGCCACTAATTATATTATACATCAAGACCAACACACTGCGTTTTGATTAAGATGTCTTGCGGCG
1 GCGCCACTAATTCCAATATACATCAAGACCAA-ACTCTGCGTTTTGGTTAAGATCTTTTGCGGCG
** ** * * *
21813268 -TTTAAGGCTTTGCGCCGCTAAT-ACTATACATTAGCGGCGTTTTCTTTATAA
65 CTTCCA--CTAAGCGCTGCTAATAACTATACATTACCGGCG-TTT-TTCATAA
** * * *
21813319 GCGCCACTAATTGAAATATACATCAAGACCAAGCTCTGCGTTTTAGTTAACATCTTTTGCGGCGC
1 GCGCCACTAATTCCAATATACATCAAGACCAAACTCTGCGTTTTGGTTAAGATCTTTTGCGGCGC
*
21813384 TTCCACTAAGCGCTGCTAAT-ACTATACATTACCGGCGTTTGTTCGTAA
66 TTCCACTAAGCGCTGCTAATAACTATACATTACCGGCGTTT-TTCATAA
* * *
21813432 GCGCCACTAATGCCAATATACATC-AGCACCAGAACGCTGCGTGTTGGT
1 GCGCCACTAATTCCAATATACATCAAG-ACCA-AACTCTGCGTTTTGGT
21813480 CTTGAGATTT
Statistics
Matches: 307, Mismatches: 69, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
112 6 0.02
113 107 0.35
114 129 0.42
115 30 0.10
116 35 0.11
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (113 bp):
GCGCCACTAATTCCAATATACATCAAGACCAAACTCTGCGTTTTGGTTAAGATCTTTTGCGGCGC
TTCCACTAAGCGCTGCTAATAACTATACATTACCGGCGTTTTTCATAA
Found at i:21816955 original size:35 final size:35
Alignment explanation
Indices: 21816909--21816980 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
21816899 CAGCGAAGCC
*
21816909 AAAAACAATACCCAAGATGATGGCGTTAACTGACT
1 AAAAACAATACCCAAGATGATGGCATTAACTGACT
21816944 AAAAACAATACCCAAGATGATGGCATTAACTGACT
1 AAAAACAATACCCAAGATGATGGCATTAACTGACT
21816979 AA
1 AA
21816981 GGGTGTTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.19
Consensus pattern (35 bp):
AAAAACAATACCCAAGATGATGGCATTAACTGACT
Found at i:21817775 original size:66 final size:65
Alignment explanation
Indices: 21817695--21817860 Score: 185
Period size: 66 Copynumber: 2.6 Consensus size: 65
21817685 ATCCATGTTA
* * * * * *
21817695 AAAAAGAAATGGTGTGGCT-AATTCACTAGGGAAGTTCATTCGTTACACCAAGATTAATTCATGC
1 AAAAAGAAATGGTGTAG-TGAATTCACAAAGGAAGTTCATCCGCTACACCAAGATTAATCCATGC
21817759 C
65 C
* *
21817760 AAACAAGAAATGGTGTAGTGAATTCACAAAGGAAGTTCATCCGCTACATCAGGATTAATCCATGC
1 AAA-AAGAAATGGTGTAGTGAATTCACAAAGGAAGTTCATCCGCTACACCAAGATTAATCCATGC
21817825 C
65 C
* * *
21817826 AAAAA-AAATGATGTAGCGAATTTACTAAA-GAAGTT
1 AAAAAGAAATGGTGTAGTGAATTCAC-AAAGGAAGTT
21817861 AATATGATAA
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
64 23 0.26
65 9 0.10
66 55 0.63
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (65 bp):
AAAAAGAAATGGTGTAGTGAATTCACAAAGGAAGTTCATCCGCTACACCAAGATTAATCCATGCC
Found at i:21818099 original size:66 final size:65
Alignment explanation
Indices: 21817914--21818099 Score: 167
Period size: 64 Copynumber: 2.8 Consensus size: 65
21817904 TGAATTCACT
* * * * * * * *
21817914 AAGGAAGCCCATCCGTTACATTGGTATTAATCTATGCCAAAGAAGAAACAATGTAGCAAATTTAC
1 AAGGAAGCTCATCCGATACATCGGGATTAATC-ATGCAAAAGAAGAAACAATGTAGAAAATTCAA
*
21817979 T
65 A
* * * * * * ***
21817980 ATGGACGTTCATCCGATACATCGGG-TGAACCATGTAAAAGAAGAAATGGTGTAGAAAATTCAAA
1 AAGGAAGCTCATCCGATACATCGGGATTAATCATGCAAAAGAAGAAACAATGTAGAAAATTCAAA
* *
21818044 AAGGAAGCTCATCCGCTACACCGGGATTAATTCATGCAAAAGAAGAAACAATGTAG
1 AAGGAAGCTCATCCGATACATCGGGATTAA-TCATGCAAAAGAAGAAACAATGTAG
21818100 CAATTTCACT
Statistics
Matches: 89, Mismatches: 29, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
64 44 0.49
65 7 0.08
66 38 0.43
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.22
Consensus pattern (65 bp):
AAGGAAGCTCATCCGATACATCGGGATTAATCATGCAAAAGAAGAAACAATGTAGAAAATTCAAA
Found at i:21818114 original size:66 final size:65
Alignment explanation
Indices: 21817908--21818116 Score: 197
Period size: 66 Copynumber: 3.2 Consensus size: 65
21817898 ATATAGTGAA
* * * * *
21817908 TTCACTAAGGAAGCCCATCCGTTACATTGGTATTAATCTATGCCAAAGAAGAAACAATGTAGCAA
1 TTCACTAAGGAAGCTCATCCGATACATCGGGATTAATC-ATGCAAAAGAAGAAACAATGTAGC-A
21817973 AT
64 AT
* * * * * * *** * *
21817975 TT-ACTATGGACGTTCATCCGATACATCGGG-TGAACCATGTAAAAGAAGAAATGGTGTAGAAAA
1 TTCACTAAGGAAGCTCATCCGATACATCGGGATTAATCATGCAAAAGAAGAAACAATGTAGCAAT
** * *
21818038 TTCAAAAAGGAAGCTCATCCGCTACACCGGGATTAATTCATGCAAAAGAAGAAACAATGTAGCAA
1 TTCACTAAGGAAGCTCATCCGATACATCGGGATTAA-TCATGCAAAAGAAGAAACAATGTAGCAA
21818103 T
65 T
21818104 TTCACTAAGGAAG
1 TTCACTAAGGAAG
21818117 TACATGTAAT
Statistics
Matches: 106, Mismatches: 33, Indels: 7
0.73 0.23 0.05
Matches are distributed among these distances:
63 4 0.04
64 39 0.37
65 7 0.07
66 54 0.51
67 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.23
Consensus pattern (65 bp):
TTCACTAAGGAAGCTCATCCGATACATCGGGATTAATCATGCAAAAGAAGAAACAATGTAGCAAT
Found at i:21821043 original size:25 final size:26
Alignment explanation
Indices: 21820995--21821055 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
21820985 TAAATTAAAT
*
21820995 TTAATATTAAGATAATTACTTTAACA
1 TTAATATTAAGATAAATACTTTAACA
*
21821021 TTAA-ATTAAGA-AAATACTATTAAGA
1 TTAATATTAAGATAAATACT-TTAACA
*
21821046 TAAATATTAA
1 TTAATATTAA
21821056 ATTTAATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 6 0.20
25 15 0.50
26 9 0.30
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (26 bp):
TTAATATTAAGATAAATACTTTAACA
Found at i:21826319 original size:9 final size:9
Alignment explanation
Indices: 21826307--21826356 Score: 64
Period size: 9 Copynumber: 5.6 Consensus size: 9
21826297 GACTTGAGGA
21826307 AATTGAGAG
1 AATTGAGAG
*
21826316 AATTAAGAG
1 AATTGAGAG
*
21826325 AGTTGAGAG
1 AATTGAGAG
* *
21826334 ATTTGAAAG
1 AATTGAGAG
21826343 AATTGAGAG
1 AATTGAGAG
21826352 AATTG
1 AATTG
21826357 GATTTGAGTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (9 bp):
AATTGAGAG
Found at i:21828571 original size:32 final size:32
Alignment explanation
Indices: 21828535--21828597 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
21828525 TATGGCTTTT
*
21828535 ATATTTTTATAGGATGTAATTATAATATTATA
1 ATATTATTATAGGATGTAATTATAATATTATA
*
21828567 ATATTATTATTGGATGTAATTATAATATTAT
1 ATATTATTATAGGATGTAATTATAATATTAT
21828598 TCTATCTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.51
Consensus pattern (32 bp):
ATATTATTATAGGATGTAATTATAATATTATA
Found at i:21830977 original size:16 final size:16
Alignment explanation
Indices: 21830956--21830991 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
21830946 TTTTACATAA
*
21830956 ATATAAATATTTGTTT
1 ATATAAATATTTGCTT
21830972 ATATAAATATTTGCTT
1 ATATAAATATTTGCTT
21830988 ATAT
1 ATAT
21830992 TAATTTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
ATATAAATATTTGCTT
Found at i:21831022 original size:16 final size:16
Alignment explanation
Indices: 21831001--21831031 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21830991 TTAATTTGTT
21831001 TTATTTATATATATAA
1 TTATTTATATATATAA
*
21831017 TTATTTATATTTATA
1 TTATTTATATATATA
21831032 TTTGTTCACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTTATATATATAA
Found at i:21831302 original size:83 final size:82
Alignment explanation
Indices: 21831166--21831466 Score: 302
Period size: 83 Copynumber: 3.6 Consensus size: 82
21831156 AAATAAAATC
* * ** * * *
21831166 TGTTTCGGGATTTATTCCTGCCATTCAACAGATTTTATTC-ATTTTTTGA-TTTGTTCCCAAATA
1 TGTTTCAGGATTCATTCCCACCGTTCAACAGATTTTATTCGA--TTTTGATTTTGTTTCCAAACA
21831229 AGAATTAAATTGAATAA-TA
64 AGAATT-AATTGAATAATTA
* * * * * **
21831248 TGTTTCGGGGATTTATTCCCATCGTTTAACAGATTTTATTTGATTTTGATTTTGTTTCCAAACGC
1 TGTTTC-AGGATTCATTCCCACCGTTCAACAGATTTTATTCGATTTTGATTTTGTTTCCAAACAA
* *
21831313 GAAATAATTGAATAATTC
65 GAATTAATTGAATAATTA
* * * *
21831331 TATTTCAGGATTCATTCCCGCCGTTCAACAGATTTTATTCGATTGTGATTTTGTTTCTAAACAAT
1 TGTTTCAGGATTCATTCCCACCGTTCAACAGATTTTATTCGATTTTGATTTTGTTTCCAAACAA-
* * *
21831396 GATTTAATTAAATAATTT
65 GAATTAATTGAATAATTA
* * *
21831414 TGTTTCAGGATTCATTCCCACCGTTTAACATATTTAATTCGATTTTGATTTTG
1 TGTTTCAGGATTCATTCCCACCGTTCAACAGATTTTATTCGATTTTGATTTTG
21831467 ATTTTGTTTG
Statistics
Matches: 181, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
82 70 0.39
83 110 0.61
84 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (82 bp):
TGTTTCAGGATTCATTCCCACCGTTCAACAGATTTTATTCGATTTTGATTTTGTTTCCAAACAAG
AATTAATTGAATAATTA
Found at i:21831433 original size:165 final size:164
Alignment explanation
Indices: 21831168--21831466 Score: 379
Period size: 165 Copynumber: 1.8 Consensus size: 164
21831158 ATAAAATCTG
* * * * *
21831168 TTTCGGGATTTATTCCTGCCATTCAACAGATTTTATTCATTTTTTGATTTGTTCCCAAATAAGAA
1 TTTCAGGATTCATTCCCGCCATTCAACAGATTTTATTCA-TTTGTGATTTGTTCCCAAACAAGAA
* * * * * *
21831233 TTAAATTGAATAATATGTTTCGGGGATTTATTCCCATCGTTTAACAGATTTTATTTGATTTTGAT
65 TTAAATTAAATAATATGTTTCGAGGATTCATTCCCACCGTTTAACAGATTTAATTCGATTTTGAT
21831298 TTTGTTTCCAAACGCGAAATAATTGAATAATTCTA
130 TTTGTTTCCAAACGCGAAATAATTGAATAATTCTA
* * *
21831333 TTTCAGGATTCATTCCCGCCGTTCAACAGATTTTATTCGA-TTGTGATTTTGTTTCTAAACAATG
1 TTTCAGGATTCATTCCCGCCATTCAACAGATTTTATTC-ATTTGTGA-TTTGTTCCCAAACAA-G
* * *
21831397 -ATTTAATTAAATAATTTTGTTTC-AGGATTCATTCCCACCGTTTAACATATTTAATTCGATTTT
63 AATTAAATTAAATAA-TATGTTTCGAGGATTCATTCCCACCGTTTAACAGATTTAATTCGATTTT
21831460 GATTTTG
127 GATTTTG
21831467 ATTTTGTTTG
Statistics
Matches: 113, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
164 5 0.04
165 99 0.88
166 9 0.08
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (164 bp):
TTTCAGGATTCATTCCCGCCATTCAACAGATTTTATTCATTTGTGATTTGTTCCCAAACAAGAAT
TAAATTAAATAATATGTTTCGAGGATTCATTCCCACCGTTTAACAGATTTAATTCGATTTTGATT
TTGTTTCCAAACGCGAAATAATTGAATAATTCTA
Found at i:21831547 original size:89 final size:89
Alignment explanation
Indices: 21831286--21831549 Score: 197
Period size: 89 Copynumber: 3.0 Consensus size: 89
21831276 ACAGATTTTA
* * ** ** * * * *
21831286 TTTGATTTTGATTTTGTTTCCAAAC-GCGAAATAATTGAATAATTCTATTTCAGGATTCATTCCC
1 TTTGATTGTGATTTTGTTTCTAAACAATGATTTAATTAAATAATTTTGTTTCAGGATTCAATCCC
* *
21831350 GCCGTTCAACAGATT---TT--A-
66 ACCGTTCAACAAATTGAATTCGAT
* *
21831368 TTCGATTGTGATTTTGTTTCTAAACAATGATTTAATTAAATAATTTTGTTTCAGGATTCATTCCC
1 TTTGATTGTGATTTTGTTTCTAAACAATGATTTAATTAAATAATTTTGTTTCAGGATTCAATCCC
* * *
21831433 ACCGTTTAACATATTTAATTCGAT
66 ACCGTTCAACAAATTGAATTCGAT
* * * *
21831457 TTTGATTTTGATTTTGTTTGC-AAATGAA-GATTTAATTAAATAATTTT-TTTCGGGATTTAATC
1 TTTGATTGTGATTTTGTTT-CTAAA-CAATGATTTAATTAAATAATTTTGTTTCAGGATTCAATC
*** * *
21831519 CTGTCGTTCAACAGAATTGATTTTGAT
64 CCACCGTTCAACA-AATTGAATTCGAT
21831546 TTTG
1 TTTG
21831550 TTTCAGAATT
Statistics
Matches: 145, Mismatches: 27, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
82 22 0.15
83 44 0.30
86 2 0.01
88 22 0.15
89 52 0.36
90 3 0.02
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (89 bp):
TTTGATTGTGATTTTGTTTCTAAACAATGATTTAATTAAATAATTTTGTTTCAGGATTCAATCCC
ACCGTTCAACAAATTGAATTCGAT
Found at i:21836627 original size:22 final size:24
Alignment explanation
Indices: 21836585--21836631 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
21836575 ATTTTTTATT
21836585 TAAATATTGTGTTTTACATAAATA
1 TAAATATTGTGTTTTACATAAATA
*
21836609 TAAATATT-TG-TTTATATAAATA
1 TAAATATTGTGTTTTACATAAATA
21836631 T
1 T
21836632 TTACTTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.55
23 2 0.09
24 8 0.36
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (24 bp):
TAAATATTGTGTTTTACATAAATA
Found at i:21836639 original size:16 final size:16
Alignment explanation
Indices: 21836606--21836641 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
21836596 TTTTACATAA
**
21836606 ATATAAATATTTGTTT
1 ATATAAATATTTACTT
21836622 ATATAAATATTTACTT
1 ATATAAATATTTACTT
21836638 ATAT
1 ATAT
21836642 TAATTTGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (16 bp):
ATATAAATATTTACTT
Found at i:21836677 original size:6 final size:6
Alignment explanation
Indices: 21836668--21836704 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
21836658 TATATATAAT
21836668 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA T
1 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA T
21836705 TTGCTAACGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTTA
Found at i:21840301 original size:22 final size:22
Alignment explanation
Indices: 21840275--21840319 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
21840265 ATTATATGTA
21840275 TTAATTCATAATACAA-TTAATT
1 TTAATTCAT-ATACAATTTAATT
* *
21840297 TTAATTTATATTCAATTTAATT
1 TTAATTCATATACAATTTAATT
21840319 T
1 T
21840320 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAATTCATATACAATTTAATT
Found at i:21842229 original size:20 final size:21
Alignment explanation
Indices: 21842182--21842232 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
21842172 ATAAAGTTTT
21842182 GGTATCGATAAAATTTTAATA
1 GGTATCGATAAAATTTTAATA
* * *
21842203 AGTATCGATATAATTTTCA-A
1 GGTATCGATAAAATTTTAATA
21842223 GGTATCGATA
1 GGTATCGATA
21842233 CTTATTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (21 bp):
GGTATCGATAAAATTTTAATA
Found at i:21847163 original size:18 final size:18
Alignment explanation
Indices: 21847132--21847178 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
21847122 AAAAATGCAT
* * *
21847132 ACAAACAAAAATAAACAC
1 ACAAATAAACATAAAAAC
21847150 ACAAATAAACATAAAAAC
1 ACAAATAAACATAAAAAC
*
21847168 AAAAATAAACA
1 ACAAATAAACA
21847179 CACATAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.74, C:0.17, G:0.00, T:0.09
Consensus pattern (18 bp):
ACAAATAAACATAAAAAC
Found at i:21852174 original size:29 final size:29
Alignment explanation
Indices: 21852137--21852245 Score: 103
Period size: 29 Copynumber: 3.8 Consensus size: 29
21852127 CAATCAGAGA
*
21852137 TAGATAGCCAGTAAGGCATCCACAGATAG
1 TAGATAGCCAGTAAGACATCCACAGATAG
* * * * *
21852166 TAGATAGCCAATAAGGCATCCATAAATAA
1 TAGATAGCCAGTAAGACATCCACAGATAG
* ** *
21852195 TAGATAGCAAGTAAGATGTCCACGGAT-G
1 TAGATAGCCAGTAAGACATCCACAGATAG
*
21852223 ATAGATAGCTAGTAAGACATCCA
1 -TAGATAGCCAGTAAGACATCCA
21852246 TTCATAAATA
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.20
Consensus pattern (29 bp):
TAGATAGCCAGTAAGACATCCACAGATAG
Found at i:21852217 original size:58 final size:59
Alignment explanation
Indices: 21852136--21852261 Score: 139
Period size: 58 Copynumber: 2.2 Consensus size: 59
21852126 TCAATCAGAG
* * *
21852136 ATAGATAGCCAGTAAGGCATCCACAGAT-AGTAGATAGCCAATAAGGCATCCATAAAT-A
1 ATAGATAGCAAGTAAGACATCCACAGATGA-TAGATAGCCAATAAGACATCCATAAATAA
** * * * **
21852194 ATAGATAGCAAGTAAGATGTCCACGGATGATAGATAGCTAGTAAGACATCCATTCATAA
1 ATAGATAGCAAGTAAGACATCCACAGATGATAGATAGCCAATAAGACATCCATAAATAA
21852253 ATAGATAGC
1 ATAGATAGC
21852262 CCCGAAGACG
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
58 45 0.80
59 11 0.20
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (59 bp):
ATAGATAGCAAGTAAGACATCCACAGATGATAGATAGCCAATAAGACATCCATAAATAA
Found at i:21852460 original size:26 final size:26
Alignment explanation
Indices: 21852431--21852516 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 26
21852421 GCCACAGAGG
*
21852431 CTCTTTAATAGAATCAGCTAAAAAAA
1 CTCTTTAATAGAATCAGCCAAAAAAA
* * * **
21852457 CTCTTTAATAGGATTAGCCAGAAAGG
1 CTCTTTAATAGAATCAGCCAAAAAAA
* * **
21852483 CTCTTTAATAGAATAAGCCATAAAGG
1 CTCTTTAATAGAATCAGCCAAAAAAA
21852509 CTCTTTAA
1 CTCTTTAA
21852517 CAGGAAATGG
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (26 bp):
CTCTTTAATAGAATCAGCCAAAAAAA
Found at i:21852513 original size:52 final size:52
Alignment explanation
Indices: 21852418--21852521 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
21852408 TATAACATAG
* * * *
21852418 TTAGCCACAGAGGCTCTTTAATAGAATCAGCTAAAAAAACTCTTTAATAGGA
1 TTAGCCACAAAGGCTCTTTAATAGAATAAGCCAAAAAAACTCTTTAACAGGA
* * **
21852470 TTAGCCAGAAAGGCTCTTTAATAGAATAAGCCATAAAGGCTCTTTAACAGGA
1 TTAGCCACAAAGGCTCTTTAATAGAATAAGCCAAAAAAACTCTTTAACAGGA
21852522 AATGGTGTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26
Consensus pattern (52 bp):
TTAGCCACAAAGGCTCTTTAATAGAATAAGCCAAAAAAACTCTTTAACAGGA
Found at i:21855667 original size:26 final size:26
Alignment explanation
Indices: 21855638--21855694 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
21855628 TTTGTGGCTA
21855638 ATTCTGTCAAAGAGCCTTTGTTGTTG
1 ATTCTGTCAAAGAGCCTTTGTTGTTG
*
21855664 ATTCTGTTAAAGAGCCTTTGTTGTTG
1 ATTCTGTCAAAGAGCCTTTGTTGTTG
21855690 ATTCT
1 ATTCT
21855695 ATTAAAAAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.19, C:0.14, G:0.21, T:0.46
Consensus pattern (26 bp):
ATTCTGTCAAAGAGCCTTTGTTGTTG
Found at i:21855699 original size:26 final size:26
Alignment explanation
Indices: 21855646--21855706 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
21855636 TAATTCTGTC
*
21855646 AAAGAGCCTTTGTTGTTGATTCTGTT
1 AAAGAGCCTTTGTTGTTGATTCTATT
21855672 AAAGAGCCTTTGTTGTTGATTCTATT
1 AAAGAGCCTTTGTTGTTGATTCTATT
*
21855698 AAAAAGCCT
1 AAAGAGCCT
21855707 CTATGACTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (26 bp):
AAAGAGCCTTTGTTGTTGATTCTATT
Found at i:21857218 original size:60 final size:60
Alignment explanation
Indices: 21857125--21858040 Score: 1832
Period size: 60 Copynumber: 15.3 Consensus size: 60
21857115 ATATTTGAAA
21857125 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857185 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857245 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857305 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857365 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857425 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857485 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857545 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857605 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857665 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857725 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857785 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857845 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857905 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21857965 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
1 TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
21858025 TCTTGATTTTCTTGAA
1 TCTTGATTTTCTTGAA
21858041 AACAAGAAAG
Statistics
Matches: 856, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 856 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (60 bp):
TCTTGATTTTCTTGAATCTTGAAATCGCTCAAAACAGCAAAATTGGACTAAGATTCGGTT
Found at i:21876730 original size:50 final size:50
Alignment explanation
Indices: 21876602--21876796 Score: 185
Period size: 50 Copynumber: 3.8 Consensus size: 50
21876592 ATTTGGGTAA
* * * *
21876602 AGAGATCCCATGTAAGACCATGTCCGGGACATGGCATTGGCATCATTGAAGTTATG
1 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CG-AG--ATG
*
21876658 AGAGG-CCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCC-TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
21876708 AGAGGTCCCCCGTAAGACCATGTTTGAGACATGGCATGGGCACCGATATG
1 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
21876758 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTG
1 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTG
21876797 ACAGTACAAG
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
50 72 0.62
51 4 0.03
52 2 0.02
53 1 0.01
55 4 0.03
56 34 0.29
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:21876971 original size:25 final size:25
Alignment explanation
Indices: 21876929--21876990 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
21876919 TATGTTCCAT
*
21876929 GAAAGTTCAGGTAAAAGCATAAATA
1 GAAAATTCAGGTAAAAGCATAAATA
* *
21876954 GCAAATTTAGGTAAAAGCATAAATA
1 GAAAATTCAGGTAAAAGCATAAATA
21876979 GAAAATTCAGGT
1 GAAAATTCAGGT
21876991 GAGTTATAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.23
Consensus pattern (25 bp):
GAAAATTCAGGTAAAAGCATAAATA
Found at i:21885345 original size:16 final size:16
Alignment explanation
Indices: 21885315--21885344 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
21885305 AGTATAGGGG
21885315 CAAAATAGTAATTTTC
1 CAAAATAGTAATTTTC
21885331 CAAAATA-TAATTTT
1 CAAAATAGTAATTTT
21885345 TGTTAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (16 bp):
CAAAATAGTAATTTTC
Found at i:21885792 original size:24 final size:24
Alignment explanation
Indices: 21885760--21885805 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
21885750 TCCGACCCAC
*
21885760 AGCTTGTGAGAGCATACAGATTAT
1 AGCTCGTGAGAGCATACAGATTAT
*
21885784 AGCTCGTGAGAGCATACTGATT
1 AGCTCGTGAGAGCATACAGATT
21885806 TATGACTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (24 bp):
AGCTCGTGAGAGCATACAGATTAT
Found at i:21895186 original size:17 final size:17
Alignment explanation
Indices: 21895156--21895192 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
21895146 ATGCACTAAC
* *
21895156 ATGAATATGTAATGACA
1 ATGAAAATGCAATGACA
21895173 ATGAAAATGCAATGACA
1 ATGAAAATGCAATGACA
21895190 ATG
1 ATG
21895193 TATACTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.24
Consensus pattern (17 bp):
ATGAAAATGCAATGACA
Found at i:21909215 original size:44 final size:44
Alignment explanation
Indices: 21909079--21909305 Score: 129
Period size: 44 Copynumber: 5.2 Consensus size: 44
21909069 AGACACTAGC
21909079 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
* *** * * * * ** * * * *
21909123 CTTGCCTTCCT-GCACCGAAAGTGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTAG-GTTG-CAGCGGAGCAGGTTAAAAATAGCAGAT
*
21909167 CTTGCCTCCCTAGGTTGTAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
* * *** * * ** * * * *
21909211 CTTGCTTGCCT-GCACCGACAGCGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTAG-GTTG-CAGCGGAGCAGGTTAAAAATAGCAGAT
*
21909255 CTTGCCTCCCTAGGTTGTAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
21909299 CTTGCCT
1 CTTGCCT
21909306 TCCTGCACCG
Statistics
Matches: 119, Mismatches: 56, Indels: 16
0.62 0.29 0.08
Matches are distributed among these distances:
43 35 0.29
44 49 0.41
45 35 0.29
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.21
Consensus pattern (44 bp):
CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
Found at i:21909619 original size:88 final size:88
Alignment explanation
Indices: 21908944--21909594 Score: 1018
Period size: 88 Copynumber: 7.4 Consensus size: 88
21908934 TGAAGATAAT
* * * *
21908944 AGATCTTTCCTTCCTGCAACGACAACGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* *
21909009 TAGCGGAGCAAGTT-AAAATAGC
66 CAGCGGAGCAGGTTAAAAATAGC
* * *
21909031 AGATCTTACCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTAGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
21909096 CAGCGGAGCAGGTTAAAAATAGC
66 CAGCGGAGCAGGTTAAAAATAGC
* * *
21909119 AGATCTTGCCTTCCTGCACCGAAAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
*
21909184 TAGCGGAGCAGGTTAAAAATAGC
66 CAGCGGAGCAGGTTAAAAATAGC
*
21909207 AGATCTTG-CTTGCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTT
1 AGATCTTGCCTT-CCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
21909271 GTAGCGGAGCAGGTTAAAAATAGC
65 GCAGCGGAGCAGGTTAAAAATAGC
* * *
21909295 AGATCTTGCCTTCCTGCACCGACAACGAAGTAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTA
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
*
21909360 CAGCAGAGCAGGTTAAAAATAGC
66 CAGCGGAGCAGGTTAAAAATAGC
* * * *
21909383 AGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACCATCCTTACCTCCTTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* *
21909448 CAGCGAAGCAGGTTAAAAATAGT
66 CAGCGGAGCAGGTTAAAAATAGC
* * *
21909471 AGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
21909536 CAGCGGAGCAGGTTAAAAATAGC
66 CAGCGGAGCAGGTTAAAAATAGC
*
21909559 AGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATC
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATC
21909595 AATGACCCAA
Statistics
Matches: 518, Mismatches: 43, Indels: 5
0.92 0.08 0.01
Matches are distributed among these distances:
87 74 0.14
88 441 0.85
89 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
CAGCGGAGCAGGTTAAAAATAGC
Found at i:21910151 original size:44 final size:44
Alignment explanation
Indices: 21910060--21910168 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 44
21910050 CTTATCTCCT
* *
21910060 TGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTTTCTCCC
1 TGAAGTTGCAGTGGAGCAGATTAAAACCAATAATCCTTTCGCCC
* * *
21910104 TGAAGTTGCAGTGGAGCGGATTAAAACCACA-GAT-CTTATCGCTC
1 TGAAGTTGCAGTGGAGCAGATTAAAACCA-ATAATCCTT-TCGCCC
* *
21910148 TGAAGTTGCAGTAGAGTAGAT
1 TGAAGTTGCAGTGGAGCAGAT
21910169 CACATTGGGT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
43 3 0.05
44 51 0.93
45 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGCAGATTAAAACCAATAATCCTTTCGCCC
Found at i:21910652 original size:21 final size:21
Alignment explanation
Indices: 21910626--21910678 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
21910616 GGATATGAGA
21910626 GCAATCTTAGATATGATATAT
1 GCAATCTTAGATATGATATAT
*
21910647 GCAATCTTAGATATGATTTAT
1 GCAATCTTAGATATGATATAT
21910668 GCAATCTTAGA
1 GCAATCTTAGA
21910679 GATTTAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (21 bp):
GCAATCTTAGATATGATATAT
Found at i:21916784 original size:36 final size:36
Alignment explanation
Indices: 21916681--21916795 Score: 106
Period size: 36 Copynumber: 3.2 Consensus size: 36
21916671 CGAGGCTGGG
* *
21916681 CATGC-ACTCCATGCATTCCATACAAAACATGTATTT
1 CATGCAAC-CCATGCATTCCATGCAAAACATGCATTT
*** ** *
21916717 CATGCATTGCATGTGTTCCATGTAAAACATGCATTT
1 CATGCAACCCATGCATTCCATGCAAAACATGCATTT
* * **
21916753 CATGCAACCCATGCATTTCATGCAAACCATGCATCC
1 CATGCAACCCATGCATTCCATGCAAAACATGCATTT
21916789 CATGCAA
1 CATGCAA
21916796 TATGCTGCAT
Statistics
Matches: 60, Mismatches: 18, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (36 bp):
CATGCAACCCATGCATTCCATGCAAAACATGCATTT
Found at i:21916792 original size:18 final size:18
Alignment explanation
Indices: 21916689--21916795 Score: 79
Period size: 18 Copynumber: 5.9 Consensus size: 18
21916679 GGCATGCACT
*
21916689 CCATGCATTCCATACAAA
1 CCATGCATTCCATGCAAA
* * * **
21916707 ACATGTATTTCATGCATT
1 CCATGCATTCCATGCAAA
* ** *
21916725 GCATGTGTTCCATGTAAA
1 CCATGCATTCCATGCAAA
* * *
21916743 ACATGCATTTCATGCAAC
1 CCATGCATTCCATGCAAA
*
21916761 CCATGCATTTCATGCAAA
1 CCATGCATTCCATGCAAA
*
21916779 CCATGCATCCCATGCAA
1 CCATGCATTCCATGCAA
21916796 TATGCTGCAT
Statistics
Matches: 67, Mismatches: 22, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (18 bp):
CCATGCATTCCATGCAAA
Found at i:21929746 original size:31 final size:30
Alignment explanation
Indices: 21929686--21929746 Score: 70
Period size: 31 Copynumber: 2.0 Consensus size: 30
21929676 ATTATAAAAT
* *
21929686 AAAAAATTAATTAAAATTACATAAATGAAA
1 AAAAAATTAAATAAAATTACAAAAATGAAA
*
21929716 AAAAATATTAAATAATATT-CAAAAATTGAAA
1 AAAAA-ATTAAATAAAATTACAAAAA-TGAAA
21929747 TCAACTTACC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (30 bp):
AAAAAATTAAATAAAATTACAAAAATGAAA
Found at i:21941889 original size:13 final size:13
Alignment explanation
Indices: 21941873--21941925 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
21941863 TTTTAAAAAT
*
21941873 ACTTATCAAAAGC
1 ACTTTTCAAAAGC
*
21941886 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGC
* *
21941899 ACCTTTCAAAAAC
1 ACTTTTCAAAAGC
21941912 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
21941925 A
1 A
21941926 TTGTTAAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
12 4 0.12
13 24 0.75
14 4 0.12
ACGTcount: A:0.42, C:0.28, G:0.04, T:0.26
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:21943365 original size:42 final size:40
Alignment explanation
Indices: 21943319--21943414 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
21943309 ACAACACTGG
21943319 TGGCTTGACCACATATTACTGGC-AGCTTGCCTGTAATTCTGA
1 TGGCTTGACCACA-A-TA-TGGCTAGCTTGCCTGTAATTCTGA
* * * *
21943361 TGGCTTGCCCACAATATTGCTAGCTTGCCTGTAATTTTGG
1 TGGCTTGACCACAATATGGCTAGCTTGCCTGTAATTCTGA
21943401 TGGCTT-ATCCACAA
1 TGGCTTGA-CCACAA
21943415 CACTAGCAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
39 3 0.06
40 31 0.66
41 1 0.02
42 12 0.26
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (40 bp):
TGGCTTGACCACAATATGGCTAGCTTGCCTGTAATTCTGA
Found at i:21943406 original size:20 final size:20
Alignment explanation
Indices: 21943343--21943406 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
21943333 ATTACTGGCA
*
21943343 GCTTGCCTGTAATTCTGATG
1 GCTTGCCTGTAATTTTGATG
*** * * *
21943363 GCTTGCCCACAATATTGCTA
1 GCTTGCCTGTAATTTTGATG
*
21943383 GCTTGCCTGTAATTTTGGTG
1 GCTTGCCTGTAATTTTGATG
21943403 GCTT
1 GCTT
21943407 ATCCACAACA
Statistics
Matches: 31, Mismatches: 13, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (20 bp):
GCTTGCCTGTAATTTTGATG
Found at i:21946533 original size:16 final size:15
Alignment explanation
Indices: 21946501--21946530 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
21946491 TATGTGTAAG
21946501 TGTGCATACCAAAAA
1 TGTGCATACCAAAAA
21946516 TGTGCATACCAAAAA
1 TGTGCATACCAAAAA
21946531 ATGAATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (15 bp):
TGTGCATACCAAAAA
Found at i:21955783 original size:49 final size:50
Alignment explanation
Indices: 21955730--21955869 Score: 138
Period size: 51 Copynumber: 2.8 Consensus size: 50
21955720 GTGGAAGTAG
* *
21955730 TGGCAGTATATCTACAAATCAGTGGTGGATTGTCCACAAAAT-TTATCAA
1 TGGCAGTATATATACAAATCAGTGGTGGCTTGTCCACAAAATGTTATCAA
* * * * * * * *
21955779 TGGCAGTATATTTGCATACCAGTGGTGCCTTGTCCATAAAAATGTTATTAG
1 TGGCAGTATATATACAAATCAGTGGTGGCTTGTCCA-CAAAATGTTATCAA
* * * *
21955830 TTGTAGTTTATATACAAATCAGTGATGGCTTGTCCACAAA
1 TGGCAGTATATATACAAATCAGTGGTGGCTTGTCCACAAA
21955870 TGGTGTTTCG
Statistics
Matches: 70, Mismatches: 19, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
49 30 0.43
50 8 0.11
51 32 0.46
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (50 bp):
TGGCAGTATATATACAAATCAGTGGTGGCTTGTCCACAAAATGTTATCAA
Found at i:21959278 original size:24 final size:24
Alignment explanation
Indices: 21959246--21959319 Score: 85
Period size: 24 Copynumber: 3.1 Consensus size: 24
21959236 CTGATATAAT
*
21959246 AACCATTTCAATGATATCATTTTC
1 AACCATTTCAATGATATCCTTTTC
* * *
21959270 AACCTTTTCAATGTTGTCCTTTTC
1 AACCATTTCAATGATATCCTTTTC
* * *
21959294 GACCATTTCATTGGTATCCTTTTC
1 AACCATTTCAATGATATCCTTTTC
21959318 AA
1 AA
21959320 ACTTTTCCTT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (24 bp):
AACCATTTCAATGATATCCTTTTC
Found at i:21959829 original size:13 final size:14
Alignment explanation
Indices: 21959807--21959839 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
21959797 ATCCATGAAA
21959807 ACAT-AATTTCTTT
1 ACATAAATTTCTTT
21959820 A-ATAAATTTCTTT
1 ACATAAATTTCTTT
21959833 ACATAAA
1 ACATAAA
21959840 CATCCATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 11 0.61
14 5 0.28
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (14 bp):
ACATAAATTTCTTT
Found at i:21972633 original size:50 final size:50
Alignment explanation
Indices: 21972532--21972668 Score: 139
Period size: 50 Copynumber: 2.7 Consensus size: 50
21972522 TAAGGTTATA
* ** * * *
21972532 AGAGGTCCCACTTAAGACCATGTCTGGGACATGGTGTTGGTATCGAGATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* *
21972582 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
** * * * * *
21972632 AGAACTCTCATGTAAGACCATATTTGGGATATGGCAT
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCAT
21972669 TTGCAGTACA
Statistics
Matches: 71, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
Found at i:21986246 original size:25 final size:25
Alignment explanation
Indices: 21986210--21986270 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
21986200 CTCCTAAATT
*
21986210 TTAATTTAATTATCTAAT-TTTTCA-A
1 TTAATTAAATTAT-TAATATTTT-ATA
*
21986235 TTTATTAAATTATTAATATTTTATA
1 TTAATTAAATTATTAATATTTTATA
21986260 TTAATTAAATT
1 TTAATTAAATT
21986271 TTTGAGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATTAATATTTTATA
Found at i:21987165 original size:3 final size:3
Alignment explanation
Indices: 21987157--21987184 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
21987147 GATCCCGAAA
21987157 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
21987185 TCCCGTAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22000144 original size:27 final size:27
Alignment explanation
Indices: 22000103--22000200 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
22000093 TAGCTGACTA
* * * * *
22000103 CCCATGTCTAGTGTCCCAGCGGAGTTC
1 CCCATGTATAATGTCTCAGAGGACTTC
*
22000130 CCCATGTATAATGTCTCGGAGGACTTC
1 CCCATGTATAATGTCTCAGAGGACTTC
* * *
22000157 CCCATATTTAATGTCTCAGTGGACTTC
1 CCCATGTATAATGTCTCAGAGGACTTC
* * *
22000184 CTCATGTTTAGTGTCTC
1 CCCATGTATAATGTCTC
22000201 GATAGGCTTC
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.18, C:0.28, G:0.20, T:0.34
Consensus pattern (27 bp):
CCCATGTATAATGTCTCAGAGGACTTC
Found at i:22000387 original size:40 final size:43
Alignment explanation
Indices: 22000285--22000400 Score: 148
Period size: 40 Copynumber: 2.7 Consensus size: 43
22000275 CACATGACGC
* *
22000285 CATAGCATCTTTCAACTATGGTCTTACTCATTTCTATCATGATGT
1 CATAACATCTTTCAGCTATGGTCTTACTCA--TCTATCATGATGT
* *
22000330 CATAACATATTTTAGCTATGGTCTTACTCAT-T-T-ATGATGT
1 CATAACATCTTTCAGCTATGGTCTTACTCATCTATCATGATGT
*
22000370 CATAACATCTTTCAGCTATGGCCTTACTCAT
1 CATAACATCTTTCAGCTATGGTCTTACTCAT
22000401 AATTGGCTTA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
40 35 0.55
41 1 0.02
42 1 0.02
43 1 0.02
45 26 0.41
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (43 bp):
CATAACATCTTTCAGCTATGGTCTTACTCATCTATCATGATGT
Found at i:22004711 original size:62 final size:62
Alignment explanation
Indices: 22004638--22004761 Score: 221
Period size: 62 Copynumber: 2.0 Consensus size: 62
22004628 TGCTATAAGC
* *
22004638 AAGTGTCTACATCCATAAACAAGCCTGAAAGCATGATAGGGTCTCTACATGAATAAGTCTCT
1 AAGTGTCTACATCCATAAAAAAGCCTGAAAGCATGATAGAGTCTCTACATGAATAAGTCTCT
*
22004700 AAGTGTGTACATCCATAAAAAAGCCTGAAAGCATGATAGAGTCTCTACATGAATAAGTCTCT
1 AAGTGTCTACATCCATAAAAAAGCCTGAAAGCATGATAGAGTCTCTACATGAATAAGTCTCT
22004762 GCATGAGGAG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (62 bp):
AAGTGTCTACATCCATAAAAAAGCCTGAAAGCATGATAGAGTCTCTACATGAATAAGTCTCT
Found at i:22005265 original size:61 final size:61
Alignment explanation
Indices: 22005119--22005257 Score: 199
Period size: 61 Copynumber: 2.3 Consensus size: 61
22005109 AGTTTTTTTT
*
22005119 TTTGTTACATGTAAGCCCTAGTGGCAAAACCTTTTGTATGTGAAAGCCTTTGTGGCTGTTC
1 TTTGTTACATGTAAGCCCTAGTGGCAAAACCTTTTATATGTGAAAGCCTTTGTGGCTGTTC
* * * * *
22005180 TTTATTACATGTGAGCCCTAGTGGCAAAA-CTTGTTATATGTGGAAGCCTTTTTGGTTGTTC
1 TTTGTTACATGTAAGCCCTAGTGGCAAAACCTT-TTATATGTGAAAGCCTTTGTGGCTGTTC
*
22005241 TTTGTTACATGTCAGCC
1 TTTGTTACATGTAAGCC
22005258 TTTGTGGCTG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 3 0.04
61 66 0.96
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (61 bp):
TTTGTTACATGTAAGCCCTAGTGGCAAAACCTTTTATATGTGAAAGCCTTTGTGGCTGTTC
Found at i:22005433 original size:30 final size:30
Alignment explanation
Indices: 22005377--22005454 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
22005367 GTATCTGGTG
*
22005377 GCCCTTGTGGCTATCTAATATTGTATGGAT
1 GCCCTTGTGGCTATCTAATATCGTATGGAT
*
22005407 GCCCTTGTGGCTATCTAAT-TACGTATGGGT
1 GCCCTTGTGGCTATCTAATAT-CGTATGGAT
*
22005437 G-CTTCTGTGGCTATCTAA
1 GCCCT-TGTGGCTATCTAA
22005455 GTCAAGTGGA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 3 0.07
30 40 0.93
ACGTcount: A:0.18, C:0.19, G:0.24, T:0.38
Consensus pattern (30 bp):
GCCCTTGTGGCTATCTAATATCGTATGGAT
Found at i:22012826 original size:277 final size:281
Alignment explanation
Indices: 22012445--22012962 Score: 731
Period size: 277 Copynumber: 1.9 Consensus size: 281
22012435 ACTCTTATTT
* * *
22012445 TTTTCTATTAATATATTATATTATTTTCTCTCTTCCTCTTCAAGTAGAACTTTTGTATTTTTGTT
1 TTTTCTATTAATATATTATATTATTTTCTCTCTTCCTATTCAAGTAGAACTATTATATTTTTGTT
* *
22012510 TATAAAAAAGAATCATGTGAAGCCAAAAAAATAGAACTCATAGATATGTGGTAAC-TCTATCAAA
66 TAT-AAAAAGAACCATGTGAAGCCAAAAAAATAGAACTCATAGATATGTAGTAACGT-TATCAAA
* *
22012574 ATTTAGAGAAATTTATTAGTTACAAATAAATTATAAATTTTGTGAGCACATGAGCTTTTCGATTT
129 ATTTAGACAAATTTATTAGTTAAAAATAAATTATAAATTTTGTGAGCACATGAGCTTTTCGATTT
*
22012639 TTGATATTACGGATAGAATAAAATTCCCCCACCAAAAAATTAAACTTTTATGTTGCCCACCACAT
194 TTGATATTACGGAGAGAATAAAATTCCCCCACCAAAAAATTAAACTTTTATGTTGCCCACCACAT
22012704 ATAAGTCCTAGTAGGACCCTAAG
259 ATAAGTCCTAGTAGGACCCTAAG
* *** *
22012727 TTTTCTATTAATATATTATATT-TTTTCTCTCTTCGTATTCAAGTAGCGGTATTATGTTTTT-TT
1 TTTTCTATTAATATATTATATTATTTTCTCTCTTCCTATTCAAGTAGAACTATTATATTTTTGTT
* * * * *
22012790 TAT-AAAAGAACCATGTGAATCC-AAAAAATAGAACTCATCGGTATGTAGTTACGTTATTAAAAT
66 TATAAAAAGAACCATGTGAAGCCAAAAAAATAGAACTCATAGATATGTAGTAACGTTATCAAAAT
* **
22012853 TTAGACAAATTTATTAGTTAAAAATAAATTCTAAATTTTGTGAGCACATGATTTTTTCGATTTTT
131 TTAGACAAATTTATTAGTTAAAAATAAATTATAAATTTTGTGAGCACATGAGCTTTTCGATTTTT
* * * * ** *
22012918 TATATTATGGAGAGAATTAATTTTTCCCACTAAAAAATTAAACTT
196 GATATTACGGAGAGAATAAAATTCCCCCACCAAAAAATTAAACTT
22012963 CTCATACTAT
Statistics
Matches: 207, Mismatches: 28, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
277 131 0.63
278 18 0.09
280 5 0.02
281 31 0.15
282 22 0.11
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (281 bp):
TTTTCTATTAATATATTATATTATTTTCTCTCTTCCTATTCAAGTAGAACTATTATATTTTTGTT
TATAAAAAGAACCATGTGAAGCCAAAAAAATAGAACTCATAGATATGTAGTAACGTTATCAAAAT
TTAGACAAATTTATTAGTTAAAAATAAATTATAAATTTTGTGAGCACATGAGCTTTTCGATTTTT
GATATTACGGAGAGAATAAAATTCCCCCACCAAAAAATTAAACTTTTATGTTGCCCACCACATAT
AAGTCCTAGTAGGACCCTAAG
Found at i:22019754 original size:27 final size:27
Alignment explanation
Indices: 22019719--22019776 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
22019709 GCATCATAGT
* *
22019719 TAGT-TGTCGGGACAATAAACATAGGA
1 TAGTCTGTCGAGACAATAAACACAGGA
*
22019745 TAGTCTGTCGAGACAATAAACACGGGA
1 TAGTCTGTCGAGACAATAAACACAGGA
22019772 TAGTC
1 TAGTC
22019777 CATCGGGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 4 0.14
27 24 0.86
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (27 bp):
TAGTCTGTCGAGACAATAAACACAGGA
Found at i:22024156 original size:45 final size:45
Alignment explanation
Indices: 22024087--22024172 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
22024077 AGATACTCGA
* *
22024087 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCGG
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCGG
22024132 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
22024173 TCGATTCACA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCGG
Found at i:22024358 original size:101 final size:101
Alignment explanation
Indices: 22024181--22024364 Score: 246
Period size: 101 Copynumber: 1.8 Consensus size: 101
22024171 GTTCGATTCA
* * * *
22024181 CATAGTAGCCTACACATAGTACTACACATGTGACAATTATTATCCGATACACGTAGTAGCTTGCA
1 CATAGTAGCCTACAAATAGTACTACACATGCGACAATCATTATCCGATACACGTAGTAGCCTGCA
* *
22024246 CATAGTACTACACACGTGATCGAAACTATCTGGTATG
66 CACAATACTACA-ACGTGATCGAAACTATCTGGTATG
** * *
22024283 CATAGTAGCCTGTAAATAGTACTACACATGCGACCTATCA-T-TCCGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTACAAATAGTACTACACATGCGA-CAATCATTATCCGATACACGTAGTAGCCTGC
22024346 ACACAATACTACAACGTGA
65 ACACAATACTACAACGTGA
22024365 CCATCACTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
100 6 0.08
101 31 0.44
102 30 0.42
103 4 0.06
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCTACAAATAGTACTACACATGCGACAATCATTATCCGATACACGTAGTAGCCTGCA
CACAATACTACAACGTGATCGAAACTATCTGGTATG
Found at i:22026956 original size:21 final size:21
Alignment explanation
Indices: 22026932--22026973 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
22026922 TATATATAAA
22026932 AATATATATTTGATTAAAAAT
1 AATATATATTTGATTAAAAAT
22026953 AATATATATTTGATTAAAAAT
1 AATATATATTTGATTAAAAAT
22026974 NNNNNNNNNN
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
AATATATATTTGATTAAAAAT
Found at i:22031205 original size:24 final size:23
Alignment explanation
Indices: 22031178--22031224 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
22031168 TGAATAGTGT
22031178 AAGAATATATATATACATAT-TATA
1 AAGAATATATA-A-ACATATATATA
*
22031202 AAGAATGTATAAACATATATATA
1 AAGAATATATAAACATATATATA
22031225 GATTATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 5 0.24
24 10 0.48
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (23 bp):
AAGAATATATAAACATATATATA
Found at i:22031273 original size:24 final size:24
Alignment explanation
Indices: 22031226--22031295 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
22031216 ATATATATAG
*
22031226 ATTATAAAATATGAAAAATGTATAGAT
1 ATTATAAAATAT---AAATGTATAGAC
*
22031253 ATTATAAAATATAAATGTATATAC
1 ATTATAAAATATAAATGTATAGAC
*
22031277 A-TATATAAATATAAGTGTA
1 ATTATA-AAATATAAATGTA
22031296 AAAATGACAG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
23 4 0.10
24 23 0.59
27 12 0.31
ACGTcount: A:0.54, C:0.01, G:0.09, T:0.36
Consensus pattern (24 bp):
ATTATAAAATATAAATGTATAGAC
Found at i:22032721 original size:86 final size:83
Alignment explanation
Indices: 22032576--22033105 Score: 446
Period size: 86 Copynumber: 6.3 Consensus size: 83
22032566 TCTCTAGTCT
* * *
22032576 ACTCCACTGCAACTTTAGAGAGATAAGACTGGATGCGATCTGCT-TTAATGCAACTTCAGAGAGA
1 ACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTT-CTGCAACTTCAGAGAGA
*
22032640 TAAGATCTATAATTTTTAATCC
65 TAAGATC--TGA-TTTTAATCC
* * * *
22032662 ACTCCACTGCAACCTCAGGGAGATAGGACTAGATGCGATCTACTCTTCTGCAACTTCAGAGAGAT
1 ACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
22032727 AAGATCTGATTTTAATCC
66 AAGATCTGATTTTAATCC
* * * *
22032745 GCTTCACTGCAACTTCA-GTAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTTAGAGAGAT
1 ACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
22032809 AAGATCTGATTTTAATCC
66 AAGATCTGATTTTAATCC
* * * * * * * ** *
22032827 GCTCCACTGTAACTTTAGGGAGATAGGA-TTGATTTCTTCTATCTGCTCCACTGCAACTTCAGGG
1 ACTCCACTGCAACTTCAGGGAGATAAGACTGGA----TGCGATCTGCTCTTCTGCAACTTCAGAG
*** *
22032891 AGATAAGA-CTGGA-TGCGATCT
62 AGATAAGATCT-GATTTTAATCC
* * * * * *** * * *
22032912 GCTCTACTGCAACTTTAGAGAGATAAGATCT-AATTTTATTCCGCT-TCACTGCAACTTCAGGGA
1 ACTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGCGA-TCTGCTCT-TCTGCAACTTCAGAGA
* ** *
22032975 GATAGGAT-TGATTTCTTCTGTCT
63 GATAAGATCTGA-TT-TT-AATCC
* * * *
22032998 TCTCCACTGCAACTTCAGGGAAATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGAT
1 ACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
*
22033063 AAGATCTAATTTTAATCC
66 AAGATCTGATTTTAATCC
*
22033081 ACTCCACTACAACTTCAGGGAGATA
1 ACTCCACTGCAACTTCAGGGAGATA
22033106 GGATTGATTT
Statistics
Matches: 361, Mismatches: 64, Indels: 41
0.77 0.14 0.09
Matches are distributed among these distances:
82 83 0.23
83 83 0.23
84 5 0.01
85 61 0.17
86 126 0.35
87 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (83 bp):
ACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTCAGAGAGAT
AAGATCTGATTTTAATCC
Found at i:22032883 original size:168 final size:168
Alignment explanation
Indices: 22032580--22033105 Score: 455
Period size: 168 Copynumber: 3.1 Consensus size: 168
22032570 TAGTCTACTC
*
22032580 CACTGCAACTTTAGAGAGATAAGACTGGATGCGATCTGCTTTAATGCAACTTCAGAGAGATAAGA
1 CACTGCAACTTCAGAGAGATAAGACTGGATGCGATCTGCTTTAATGCAACTTCAGAGAGATAAGA
*
22032645 TCTATAATTTTTAATCCACTCCACTGCAACCTCAGGGAGATAGGACTAGATGCGATCTACTCTTC
66 TC-ATAATTTTTAATCCACTCCACTGCAACCTCAGGGAGATAGGACTAGATGCGATCTACTCTAC
22032710 TGCAACTTCAGAGAGATAAGATCTGATTTTAATCCGCTT
130 TGCAACTTCAGAGAGATAAGATCTGATTTTAATCCGCTT
* * *
22032749 CACTGCAACTTCAG-TAGATAAGACTGGATGCGATCTGCTCTT-CTGCAACTTTAGAGAGATAAG
1 CACTGCAACTTCAGAGAGATAAGACTGGATGCGATCTGCT-TTAATGCAACTTCAGAGAGATAAG
* * * * * * * *
22032812 ATC-TGA-TTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGA-TTGATTTC-TTCTATCTGC
65 ATCATAATTTTTAATCCACTCCACTGCAACCTCAGGGAGATAGGACTAGA-TGCGATCTA-CT-C
* *** *
22032873 TCCACTGCAACTTCAGGGAGATAAGA-CTGGA-TGCGATCTGC-T
127 T--ACTGCAACTTCAGAGAGATAAGATCT-GATTTTAATCCGCTT
* * *** * * * *
22032915 CTACTGCAACTTTAGAGAGATAAGATCT-AATTTTATTCCGCTTCACTGCAACTTCAGGGAGATA
1 C-ACTGCAACTTCAGAGAGATAAGA-CTGGATGCGA-TCTGCTTTAATGCAACTTCAGAGAGATA
* * ** ** * * * * * *
22032979 GGAT--TGATTTCTTCTGTCTTCTCCACTGCAACTTCAGGGAAATAAGACTGGATGCAATCTGCT
63 AGATCATAATTT-TT-AATCCACTCCACTGCAACCTCAGGGAGATAGGACTAGATGCGATCTACT
* * *
22033042 CTACTGCAACTTCAGAGAGATAAGATCTAATTTTAATCCACTC
126 CTACTGCAACTTCAGAGAGATAAGATCTGATTTTAATCCGCTT
* *
22033085 CACTACAACTTCAGGGAGATA
1 CACTGCAACTTCAGAGAGATA
22033106 GGATTGATTT
Statistics
Matches: 285, Mismatches: 52, Indels: 40
0.76 0.14 0.11
Matches are distributed among these distances:
164 7 0.02
165 37 0.13
166 6 0.02
167 20 0.07
168 107 0.38
169 68 0.24
170 5 0.02
171 29 0.10
172 6 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (168 bp):
CACTGCAACTTCAGAGAGATAAGACTGGATGCGATCTGCTTTAATGCAACTTCAGAGAGATAAGA
TCATAATTTTTAATCCACTCCACTGCAACCTCAGGGAGATAGGACTAGATGCGATCTACTCTACT
GCAACTTCAGAGAGATAAGATCTGATTTTAATCCGCTT
Found at i:22033189 original size:126 final size:127
Alignment explanation
Indices: 22032749--22033241 Score: 801
Period size: 127 Copynumber: 3.9 Consensus size: 127
22032739 TAATCCGCTT
* * *
22032749 CACTGCAACTTCA-GTAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTTAGAGAGATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
* * * *
22032813 TCTGATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATTGATTTCTTCTATCTGCTC
66 TCTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTC
*
22032875 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
* * *
22032940 TCTAATTTTATTCCGCTTCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTTCTC
66 TCTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTC
* *
22033002 CACTGCAACTTCAGGGAAATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
* *
22033067 TCTAATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCT-
66 TCTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTC
* **
22033128 CACTGTAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTTTGCAACTTCAGAGAGATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
*
22033193 TCTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTT
66 TCTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTT
22033242 AACCAGTTTG
Statistics
Matches: 341, Mismatches: 25, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
126 119 0.35
127 222 0.65
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (127 bp):
CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
TCTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTC
Found at i:22033217 original size:253 final size:253
Alignment explanation
Indices: 22032749--22033241 Score: 808
Period size: 253 Copynumber: 1.9 Consensus size: 253
22032739 TAATCCGCTT
* * * * *
22032749 CACTGCAACTTCAGTAGATAAGACTGGATGCGATCTGCTCTTCTGCAACTTTAGAGAGATAAGAT
1 CACTGCAACTTCAGGAAATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
* * ** *
22032814 CTGATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATTGATTTCTTCTATCTGCTCCACT
66 CTAATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCTATCTGCTCCACT
*
22032879 GCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTA
131 GCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTA
* *
22032944 ATTTTATTCCGCTTCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTTCTC
196 ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTTCTC
22033002 CACTGCAACTTCAGGGAAATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGA
1 CACTGCAACTTCA-GGAAATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGA
*
22033067 TCTAATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCT-CAC
65 TCTAATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCTATCTGCTCCAC
* **
22033131 TGTAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTTTTGCAACTTCAGAGAGATAAGATCT
130 TGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
*
22033196 GATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTT
195 AATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTT
22033242 AACCAGTTTG
Statistics
Matches: 221, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
253 120 0.54
254 101 0.46
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (253 bp):
CACTGCAACTTCAGGAAATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
CTAATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTGATTTCTTCTATCTGCTCCACT
GCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTA
ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTTCTC
Found at i:22037964 original size:16 final size:16
Alignment explanation
Indices: 22037939--22037973 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
22037929 TTCTATAATG
22037939 AAATGCCATGCAGTCA
1 AAATGCCATGCAGTCA
*
22037955 AAATGTCATGCAGTCA
1 AAATGCCATGCAGTCA
22037971 AAA
1 AAA
22037974 CAAAACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (16 bp):
AAATGCCATGCAGTCA
Found at i:22039777 original size:24 final size:23
Alignment explanation
Indices: 22039750--22039796 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
22039740 TGAATAGTGT
22039750 AAGAATATATATATACATAT-TATA
1 AAGAATATATA-A-ACATATATATA
*
22039774 AAGAATGTATAAACATATATATA
1 AAGAATATATAAACATATATATA
22039797 GATTATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 5 0.24
24 10 0.48
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (23 bp):
AAGAATATATAAACATATATATA
Found at i:22040493 original size:31 final size:31
Alignment explanation
Indices: 22040441--22040504 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
22040431 TATTTGTTTT
* * * *
22040441 AAGAAACAATGAAGAACATAAAAATAGTAAA
1 AAGAAACAAGGAAGAAAATAAAAAAAATAAA
22040472 AAGAAAC-AGGAAGAAAAATAAAAAAAATAAA
1 AAGAAACAAGGAAG-AAAATAAAAAAAATAAA
22040503 AA
1 AA
22040505 TAAAACAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.73, C:0.05, G:0.12, T:0.09
Consensus pattern (31 bp):
AAGAAACAAGGAAGAAAATAAAAAAAATAAA
Found at i:22040503 original size:15 final size:16
Alignment explanation
Indices: 22040485--22040517 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
22040475 AAACAGGAAG
22040485 AAAAATAAAA-AAAAT
1 AAAAATAAAACAAAAT
22040500 AAAAATAAAACAAAAT
1 AAAAATAAAACAAAAT
22040516 AA
1 AA
22040518 TCACCTTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAAATAAAACAAAAT
Found at i:22045186 original size:90 final size:90
Alignment explanation
Indices: 22045026--22045189 Score: 222
Period size: 90 Copynumber: 1.8 Consensus size: 90
22045016 TTTTGAGGGA
* * ** *
22045026 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGACAAAAAAGGGAAGGGTTTAATTG
1 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTCAAAAAAAAAAGAAGGGATTAATTG
22045091 CTTTTTTTTGAATAAGTTTGAAGTC
66 CTTTTTTTTGAATAAGTTTGAAGTC
* *** *
22045116 CTTTTTTATGCATTTTGAAAGTTCAAGTGTTCAATTGAGTCCAAAAAAAAAAGAGGGGATTAATT
1 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGT-CAAAAAAAAAAGAAGGGATTAATT
22045181 G-TTTTTTTT
65 GCTTTTTTTT
22045190 AATTAAAGGC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
90 44 0.70
91 19 0.30
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (90 bp):
CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTCAAAAAAAAAAGAAGGGATTAATTG
CTTTTTTTTGAATAAGTTTGAAGTC
Found at i:22046226 original size:22 final size:22
Alignment explanation
Indices: 22046186--22046227 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
22046176 GTAAATACTT
*
22046186 AAAAGTTAAGGATTCAAAGTGG
1 AAAAGTTAAGGACTCAAAGTGG
22046208 AAAAGTTCAAGGACT-AAAGT
1 AAAAGTT-AAGGACTCAAAGT
22046228 TGTAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.48, C:0.07, G:0.24, T:0.21
Consensus pattern (22 bp):
AAAAGTTAAGGACTCAAAGTGG
Found at i:22047880 original size:34 final size:34
Alignment explanation
Indices: 22047842--22047948 Score: 78
Period size: 34 Copynumber: 3.1 Consensus size: 34
22047832 TCCACTCAAG
*
22047842 ATTAATGTATGTCACACTATGAACATCACAAGTA
1 ATTAATGTATGACACACTATGAACATCACAAGTA
** * * * *
22047876 ATTAAATCCAT-ACATAGTCTATCATCCA-CTCAAG--
1 ATT-AATGTATGACACA--CTATGA-ACATCACAAGTA
*
22047910 ATTAATGTATGCCACACTATGAACATCACAAGTA
1 ATTAATGTATGACACACTATGAACATCACAAGTA
22047944 ATTAA
1 ATTAA
22047949 ATCCATAAAC
Statistics
Matches: 51, Mismatches: 14, Indels: 16
0.63 0.17 0.20
Matches are distributed among these distances:
31 2 0.04
32 10 0.20
33 5 0.10
34 17 0.33
35 5 0.10
36 10 0.20
37 2 0.04
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (34 bp):
ATTAATGTATGACACACTATGAACATCACAAGTA
Found at i:22047926 original size:68 final size:68
Alignment explanation
Indices: 22047817--22047955 Score: 260
Period size: 68 Copynumber: 2.0 Consensus size: 68
22047807 CGAGTGACGA
*
22047817 ATACATAGTCCATCATCCACTCAAGATTAATGTATGTCACACTATGAACATCACAAGTAATTAAA
1 ATACATAGTCCATCATCCACTCAAGATTAATGTATGCCACACTATGAACATCACAAGTAATTAAA
22047882 TCC
66 TCC
*
22047885 ATACATAGTCTATCATCCACTCAAGATTAATGTATGCCACACTATGAACATCACAAGTAATTAAA
1 ATACATAGTCCATCATCCACTCAAGATTAATGTATGCCACACTATGAACATCACAAGTAATTAAA
22047950 TCC
66 TCC
22047953 ATA
1 ATA
22047956 AACCAATCTA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (68 bp):
ATACATAGTCCATCATCCACTCAAGATTAATGTATGCCACACTATGAACATCACAAGTAATTAAA
TCC
Found at i:22054738 original size:24 final size:25
Alignment explanation
Indices: 22054694--22054740 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
22054684 AACTGGGTAC
*
22054694 AGTTTCATTTGAATTTTTACTTTAT
1 AGTTACATTTGAATTTTTACTTTAT
22054719 AGTTACATTTG-ATTTTTACTTT
1 AGTTACATTTGAATTTTTACTTT
22054741 TGGCTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.60
Consensus pattern (25 bp):
AGTTACATTTGAATTTTTACTTTAT
Found at i:22056322 original size:19 final size:19
Alignment explanation
Indices: 22056298--22056343 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
22056288 CTCTCTTAGG
*
22056298 GTTAGGGTTT-TTAAAGTTT
1 GTTAGGGTTTATT-AACTTT
22056317 GTTA-GGTTTATTAACTTT
1 GTTAGGGTTTATTAACTTT
22056335 GTTAGGGTT
1 GTTAGGGTT
22056344 AGGGTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.20, C:0.02, G:0.26, T:0.52
Consensus pattern (19 bp):
GTTAGGGTTTATTAACTTT
Found at i:22060601 original size:9 final size:9
Alignment explanation
Indices: 22060587--22060642 Score: 76
Period size: 9 Copynumber: 6.2 Consensus size: 9
22060577 TTTGGTTAAA
22060587 AATTAACCG
1 AATTAACCG
22060596 AATTAACCG
1 AATTAACCG
* **
22060605 AACTGCCCG
1 AATTAACCG
22060614 AATTAACCG
1 AATTAACCG
*
22060623 AATTACCCG
1 AATTAACCG
22060632 AATTAACCG
1 AATTAACCG
22060641 AA
1 AA
22060643 GTGAATCCCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.41, C:0.27, G:0.12, T:0.20
Consensus pattern (9 bp):
AATTAACCG
Found at i:22066231 original size:117 final size:118
Alignment explanation
Indices: 22066020--22066245 Score: 427
Period size: 117 Copynumber: 1.9 Consensus size: 118
22066010 ATTATGTGTT
* *
22066020 TGAATCGAAATGAACGAAATGAATAGAATTAGAGAAGTGAGAAACATTCAGGAATGATTATGGTT
1 TGAATCGAAATGAACGAAACGAATAGAAATAGAGAAGTGAGAAACATTCAGGAATGATTATGGTT
22066085 TTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATGTAGGTTTCTCAAA
66 TTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATGTAGGTTTCTCAAA
22066138 TGAA-CGAAATGAACGAAACGAATAGAAATAGAGAAGTGAGAAACATTCAGGAATGATTATGGTT
1 TGAATCGAAATGAACGAAACGAATAGAAATAGAGAAGTGAGAAACATTCAGGAATGATTATGGTT
22066202 TTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATGTAGG
66 TTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATGTAGG
22066246 AATGATAATG
Statistics
Matches: 106, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
117 102 0.96
118 4 0.04
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.27
Consensus pattern (118 bp):
TGAATCGAAATGAACGAAACGAATAGAAATAGAGAAGTGAGAAACATTCAGGAATGATTATGGTT
TTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATGTAGGTTTCTCAAA
Found at i:22066257 original size:57 final size:57
Alignment explanation
Indices: 22066186--22066301 Score: 205
Period size: 57 Copynumber: 2.0 Consensus size: 57
22066176 AGAAACATTC
* * *
22066186 AGGAATGATTATGGTTTTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATGT
1 AGGAATGATAATGGTTCTCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATGT
22066243 AGGAATGATAATGGTTCTCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATGT
1 AGGAATGATAATGGTTCTCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATGT
22066300 AG
1 AG
22066302 CTTTTCTCTG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.33
Consensus pattern (57 bp):
AGGAATGATAATGGTTCTCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATGT
Found at i:22066310 original size:46 final size:45
Alignment explanation
Indices: 22066260--22066378 Score: 124
Period size: 39 Copynumber: 2.8 Consensus size: 45
22066250 ATAATGGTTC
*
22066260 TCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATGTAGCTTT
1 TCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATAT-GCTTT
* * * * *
22066306 TCTCTGAAATGGAGAAA--CATTCA---GG-AATGATTATGGTTT
1 TCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATATGCTTT
*
22066345 TTTCTGAAATGGAGAAATTGAATCATTTGGAAAT
1 TCTCTGAAATGGAGAAATTGAATCATTTGGAAAT
22066379 GAATTTAGGT
Statistics
Matches: 58, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
39 20 0.34
40 6 0.10
41 6 0.10
44 6 0.10
45 3 0.05
46 17 0.29
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.34
Consensus pattern (45 bp):
TCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATATGCTTT
Found at i:22066390 original size:46 final size:46
Alignment explanation
Indices: 22066255--22066390 Score: 144
Period size: 46 Copynumber: 3.1 Consensus size: 46
22066245 GAATGATAAT
* * *
22066255 GGTTCTCTCTGAAATGGAGAAATTGAATCATTTGGAAATAAATGTA
1 GGTTTTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATTTA
* * *
22066301 GCTTTTCTCTGAAATGGAGAAA--CATTCA---GG-AATG-ATTAT-
1 GGTTTTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATT-TA
*
22066340 GGTTTTTTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATTTA
1 GGTTTTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATTTA
22066386 GGTTT
1 GGTTT
22066391 CTCATAATGG
Statistics
Matches: 71, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
39 22 0.31
40 4 0.06
41 6 0.08
44 6 0.08
45 5 0.07
46 28 0.39
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (46 bp):
GGTTTTCTCTGAAATGGAGAAATTGAATCATTTGGAAATGAATTTA
Found at i:22072464 original size:23 final size:23
Alignment explanation
Indices: 22072433--22072484 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
22072423 AAATGTTTGG
22072433 AAGG-ATCGTCTATTAGTTAGAT
1 AAGGAATCGTCTATTAGTTAGAT
*
22072455 AAGGAATCGTCTGTTAGTTAGAT
1 AAGGAATCGTCTATTAGTTAGAT
22072478 AAGGAAT
1 AAGGAAT
22072485 ATATGAGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 4 0.14
23 24 0.86
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.33
Consensus pattern (23 bp):
AAGGAATCGTCTATTAGTTAGAT
Found at i:22075373 original size:20 final size:21
Alignment explanation
Indices: 22075350--22075395 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
22075340 AGAAAATTAA
*
22075350 AAAATAAATGA-TAAATAGTC
1 AAAATAAATAACTAAATAGTC
*
22075370 AAAAT-AATAACTAAATAGTG
1 AAAATAAATAACTAAATAGTC
22075390 AAAATA
1 AAAATA
22075396 TAGATTAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.63, C:0.04, G:0.09, T:0.24
Consensus pattern (21 bp):
AAAATAAATAACTAAATAGTC
Found at i:22083970 original size:19 final size:19
Alignment explanation
Indices: 22083935--22083972 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22083925 ATGTTATTAT
*
22083935 TATTTTAATGTCTATAGAA
1 TATTTTAAGGTCTATAGAA
22083954 TATTATTAAGGTC-ATAGAA
1 TATT-TTAAGGTCTATAGAA
22083973 AAAGATTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.42
Consensus pattern (19 bp):
TATTTTAAGGTCTATAGAA
Found at i:22089990 original size:33 final size:33
Alignment explanation
Indices: 22089961--22090027 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
22089951 GATTATGCAT
22089961 TGAAATGGTAAGTTATGTTCATGTTTTATGAAC
1 TGAAATGGTAAGTTATGTTCATGTTTTATGAAC
* *
22089994 TGAAATGGTGAGTTATGTTCATGTTTTACGAAC
1 TGAAATGGTAAGTTATGTTCATGTTTTATGAAC
22090027 T
1 T
22090028 TACTAAGCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (33 bp):
TGAAATGGTAAGTTATGTTCATGTTTTATGAAC
Found at i:22091343 original size:3 final size:3
Alignment explanation
Indices: 22091328--22091387 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
22091318 TCTGGCTGCC
*
22091328 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
22091376 GAT GAT GAT GAT
1 GAT GAT GAT GAT
22091388 AAAGGCGCTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.02, G:0.33, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:22092470 original size:82 final size:81
Alignment explanation
Indices: 22092321--22092490 Score: 198
Period size: 82 Copynumber: 2.1 Consensus size: 81
22092311 TGGTCAAATG
* ** *
22092321 TCGATATTTTATGAATTATTGATACCCTTCTTAAAAAAGATACCAAAATGGCATTTTATTTTTTC
1 TCGATATTTTATGAAATATCAATACCCTTCTTAAAAAAGATACCAAAATAGCA-TTTATTTTTTC
* **
22092386 ACAAACCCTATTAAGTA
65 ACAAAACCTACAAAGTA
* * * *
22092403 TCGATATTTTCTGAAATATCAATACCTTTTCTTAAAAATGATACTAAAATAGCA-TTATTTTTCT
1 TCGATATTTTATGAAATATCAATACC-CTTCTTAAAAAAGATACCAAAATAGCATTTATTTTT-T
*
22092467 CACAAAACTTACAAAGTA
64 CACAAAACCTACAAAGTA
22092485 TCGATA
1 TCGATA
22092491 AAATTGTTTT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
81 8 0.11
82 43 0.58
83 23 0.31
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (81 bp):
TCGATATTTTATGAAATATCAATACCCTTCTTAAAAAAGATACCAAAATAGCATTTATTTTTTCA
CAAAACCTACAAAGTA
Found at i:22096075 original size:34 final size:34
Alignment explanation
Indices: 22096032--22096096 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
22096022 CAGTTCAGTT
*
22096032 GGCCTTAGCCCATTACAGTGACAGTATCAGTGTA
1 GGCCTTAGCCCATTACAGTGACAGTAACAGTGTA
22096066 GGCCTTAGCCCATTACAGTGACAGTAACAGT
1 GGCCTTAGCCCATTACAGTGACAGTAACAGT
22096097 TCAAACATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (34 bp):
GGCCTTAGCCCATTACAGTGACAGTAACAGTGTA
Found at i:22096406 original size:27 final size:27
Alignment explanation
Indices: 22096373--22096548 Score: 257
Period size: 27 Copynumber: 6.6 Consensus size: 27
22096363 TTAAGCATAT
*
22096373 AGTCATTTTATAACATAGGGGCCTAAC
1 AGTCATTTTATAACATAGGGGCATAAC
22096400 AGTCATTTTATAACATAGGGGCATAAC
1 AGTCATTTTATAACATAGGGGCATAAC
*
22096427 CGTCATTTTATAACATAGGGGCATAAC
1 AGTCATTTTATAACATAGGGGCATAAC
*
22096454 AGTTATTTTATAACATAGGGGCATAATC
1 AGTCATTTTATAACATAGGGGCATAA-C
* * * *
22096482 -GTTATTTTATAATATA-AGGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAC
22096507 AGTCATTTTATAACATAGGGGCATAAC
1 AGTCATTTTATAACATAGGGGCATAAC
*
22096534 AATCATTTTATAACA
1 AGTCATTTTATAACA
22096549 GCTTGGGGGT
Statistics
Matches: 134, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
26 21 0.16
27 112 0.84
28 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (27 bp):
AGTCATTTTATAACATAGGGGCATAAC
Found at i:22096522 original size:80 final size:81
Alignment explanation
Indices: 22096375--22096548 Score: 253
Period size: 80 Copynumber: 2.2 Consensus size: 81
22096365 AAGCATATAG
* * *
22096375 TCATTTTATAACATAGGGGCCTAACAGTCATTTTATAACATAGGGGCATAACCGTCATTTTATAA
1 TCATTTTATAACATAGGGGCATAACAGTCATTTTATAACATAGAGGCATAACAGTCATTTTATAA
*
22096440 CATAGGGGCATAACAG
66 CATAGGGGCATAACAA
* * * *
22096456 TTATTTTATAACATAGGGGCATAATC-GTTATTTTATAATATA-AGGCATAATAGTCATTTTATA
1 TCATTTTATAACATAGGGGCATAA-CAGTCATTTTATAACATAGAGGCATAACAGTCATTTTATA
22096519 ACATAGGGGCATAACAA
65 ACATAGGGGCATAACAA
22096536 TCATTTTATAACA
1 TCATTTTATAACA
22096549 GCTTGGGGGT
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
80 46 0.55
81 36 0.43
82 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (81 bp):
TCATTTTATAACATAGGGGCATAACAGTCATTTTATAACATAGAGGCATAACAGTCATTTTATAA
CATAGGGGCATAACAA
Found at i:22118107 original size:11 final size:11
Alignment explanation
Indices: 22118091--22118123 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
22118081 AAACCTTTTC
22118091 TCTCTCAAAAT
1 TCTCTCAAAAT
22118102 TCTCTCTAAAA-
1 TCTCTC-AAAAT
22118113 TCTCTCAAAAT
1 TCTCTCAAAAT
22118124 AATTTTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 4 0.20
11 12 0.60
12 4 0.20
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (11 bp):
TCTCTCAAAAT
Found at i:22119573 original size:18 final size:20
Alignment explanation
Indices: 22119527--22119568 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
22119517 GCCATGGATG
*
22119527 TATTATGCCAATATAATTGA
1 TATTGTGCCAATATAATTGA
22119547 TTGATTGTGCCAATATAATTGA
1 -T-ATTGTGCCAATATAATTGA
22119569 ATGTGATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (20 bp):
TATTGTGCCAATATAATTGA
Found at i:22127564 original size:22 final size:23
Alignment explanation
Indices: 22127537--22127590 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
22127527 TGCACTGAAT
22127537 AGAGAGCACTA-AAGTGCTAAAC
1 AGAGAGCACTAGAAGTGCTAAAC
*
22127559 AGAGAGCAC-AGATGTGCTAAAC
1 AGAGAGCACTAGAAGTGCTAAAC
*
22127581 GGAGAGCACT
1 AGAGAGCACT
22127591 GTCGTGCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.41, C:0.19, G:0.28, T:0.13
Consensus pattern (23 bp):
AGAGAGCACTAGAAGTGCTAAAC
Found at i:22128676 original size:24 final size:24
Alignment explanation
Indices: 22128621--22128667 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
22128611 ATAAGTAAAT
* *
22128621 TATACATTTTATTTCAAATGTATG
1 TATATATTTTATTACAAATGTATG
*
22128645 TATATATTTTATTACACATGTAT
1 TATATATTTTATTACAAATGTAT
22128668 TTTATTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (24 bp):
TATATATTTTATTACAAATGTATG
Found at i:22128730 original size:36 final size:36
Alignment explanation
Indices: 22128689--22128759 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
22128679 CACACAAGTG
22128689 TCACATTTTTGGTTTATTTACTAATTTAGTCCCTTA
1 TCACATTTTTGGTTTATTTACTAATTTAGTCCCTTA
*
22128725 TCACATTTTTGGTTTATTTACTAGTTTAGTCCCTT
1 TCACATTTTTGGTTTATTTACTAATTTAGTCCCTT
22128760 GATTTTTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.54
Consensus pattern (36 bp):
TCACATTTTTGGTTTATTTACTAATTTAGTCCCTTA
Found at i:22137318 original size:193 final size:195
Alignment explanation
Indices: 22136986--22137373 Score: 681
Period size: 193 Copynumber: 2.0 Consensus size: 195
22136976 ATCTGTAAAC
*
22136986 TAAAGCAGTAGAAATAGAACAGAATTTTTTTCCTCTGAGTGTTTTTTCATGGCATCAGGGCTTTA
1 TAAAGCAGTAGAAATAGAACAGAATTTTTTTCCTCTGAG-GTTTTTTCATGGCATCAGAGCTTTA
*
22137051 GGATTCATTCGATCCTAATTTTTTTTCTCTAATTTCCCTTCTTAAAAATTCCTTCGGTTTAGTCC
65 GGATTCATTCGATCCTAATTTTTTTTCTCTAATTTCCCTTCCTAAAAATTCCTTCGGTTTAGTCC
22137116 TCCAATGGGTGATATCAATGAAAATTTCTCTGAAACTGAGACATCACAAATAACTCAGAATATCA
130 TCCAATGGGTGATATCAATGAAAATTTCTCTGAAACTGAGACATCACAAATAACTCAGAATATCA
22137181 T
195 T
* * * * *
22137182 TAAAGCAGTAGAAATTGAACTGAA-TTTTTTGCTCTGA-GTTTTTTCATGGTATCAGAGTTTTAG
1 TAAAGCAGTAGAAATAGAACAGAATTTTTTTCCTCTGAGGTTTTTTCATGGCATCAGAGCTTTAG
22137245 GATTCATTCGATCCTAATTTTTTTTCTCTAATTTCCCTTCCTAAAAATTCCTTCGGTTTAGTCCT
66 GATTCATTCGATCCTAATTTTTTTTCTCTAATTTCCCTTCCTAAAAATTCCTTCGGTTTAGTCCT
*
22137310 CCAATGGGTGATATCAATGAAAATTTCTCTGAAACTGAGACATCACAAATAATTCAGAATATCA
131 CCAATGGGTGATATCAATGAAAATTTCTCTGAAACTGAGACATCACAAATAACTCAGAATATCA
22137374 ATCAAGGAAT
Statistics
Matches: 184, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
193 150 0.82
195 12 0.07
196 22 0.12
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (195 bp):
TAAAGCAGTAGAAATAGAACAGAATTTTTTTCCTCTGAGGTTTTTTCATGGCATCAGAGCTTTAG
GATTCATTCGATCCTAATTTTTTTTCTCTAATTTCCCTTCCTAAAAATTCCTTCGGTTTAGTCCT
CCAATGGGTGATATCAATGAAAATTTCTCTGAAACTGAGACATCACAAATAACTCAGAATATCAT
Found at i:22149622 original size:12 final size:12
Alignment explanation
Indices: 22149605--22149655 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
22149595 ATGAGTTATT
22149605 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
22149617 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
22149629 TAAGTTAGTAAG
1 TAAGTAAGCAAG
22149641 TAAAG-AAGCAAG
1 T-AAGTAAGCAAG
22149653 TAA
1 TAA
22149656 AGATTCTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
11 2 0.06
12 27 0.84
13 3 0.09
ACGTcount: A:0.53, C:0.06, G:0.22, T:0.20
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:22149653 original size:20 final size:20
Alignment explanation
Indices: 22149615--22149653 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22149605 TAAGTAAGCA
*
22149615 AGTAAGTAAACAAGTAAGTT
1 AGTAAGTAAACAAGCAAGTT
*
22149635 AGTAAGTAAAGAAGCAAGT
1 AGTAAGTAAACAAGCAAGT
22149654 AAAGATTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (20 bp):
AGTAAGTAAACAAGCAAGTT
Found at i:22150218 original size:12 final size:12
Alignment explanation
Indices: 22150201--22150239 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
22150191 ATGAGTTATT
22150201 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
22150213 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
22150225 TAAGTGAGTAAG
1 TAAGTAAGCAAG
22150237 TAA
1 TAA
22150240 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:22151002 original size:12 final size:12
Alignment explanation
Indices: 22150985--22151023 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
22150975 ATGAGTTATT
22150985 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
22150997 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
22151009 TAAGTGAGTAAG
1 TAAGTAAGCAAG
22151021 TAA
1 TAA
22151024 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:22152590 original size:12 final size:12
Alignment explanation
Indices: 22152573--22152611 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
22152563 ATGAGTTATT
22152573 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
22152585 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
22152597 TAAGTGAGTAAG
1 TAAGTAAGCAAG
22152609 TAA
1 TAA
22152612 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:22152686 original size:787 final size:783
Alignment explanation
Indices: 22151660--22153300 Score: 2788
Period size: 787 Copynumber: 2.1 Consensus size: 783
22151650 NNNNNNNTTT
* *
22151660 ACAAAAATAATTATGATTTATAATTTGTATGTCCAGATTCCTTAGTGAGTCTATTTTCTGTAGAA
1 ACAAAAATAATTATGATTTATAATTTATATGTCTAGATTCCTTAGTGAGTCTATTTTCTGTAGAA
* *
22151725 ACAAGTAATAACATGTTATTTAAGTAATCAAGGGAGGAATAAGTTATAATCATGAGCTATTTAAG
66 ACAAGTAATAACATGTTATTCAAATAATCAAGGGAGGAATAAGTTATAATCATGAGCTATTTAAG
* *
22151790 TAAGCAAGTAGGAAAACAAGTAAGTGAGTATGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATG
131 TAAGCAAGTAAGAAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATG
* *
22151855 AAATTTATGAGTTTGATTATTTATGATAAATGTTGTTATTTATTTACTTGAAAATTTACTAACCT
196 AAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTTACTTGAAAACTTACTAACCT
22151920 TTATGCTTACTTTCTTTATTGTCCTTATTTTTATAGTATCGCCAAGTCAGTTCGAGAATCACAAA
261 TTATGCTTACTTTCTTTATTGTCCTTATTTTTATAGTATCGCCAAGTCAGTTCGAGAATCACAAA
*
22151985 GACGTCGGAGTTCTTCGCACACTATGTACAGACATCTCGGTATTATGTGATTTCAAAATGTGTAA
326 GACGTCGGAGTTCTTCGCACACTATATACAGACATCTCGGTATTATGTGATTTCAAAATGTGTAA
*
22152050 AGCTATGGCATGTATAGAGACTTAGTCA-TTTTGAGCGTGTTTGTATGATATGGAGAATG-GTTA
391 AGCTATGGCATGTATAGAGACTTAGTCATTTTTGAGCGTG-TTATATGATATGGAGAATGAG-TA
22152113 GCTATTGCAATGGCTAATTAAGAACATGTGTGTGTGGTGTTATGAATGCCTAGGTGATAGTTTAT
454 GCTATTGCAATGGCTAATTAAGAACA----TGTGTGGTGTTATGAATGCCTAGGTGATAGTTTAT
22152178 ACCTAGAAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGAGAACAGCAGTGACATG
515 ACCTAGAAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGAGAACAGCAGTGACATG
22152243 ACTTTGAAAAATCACCAGGGATAGTATAAATGAATTAGAGAGTGAATGATATATAGAATTAAAGC
580 ACTTTGAAAAATCACCAGGGATAGTATAAATGAATTAGAGAGTGAATGATATATAGAATTAAAGC
*
22152308 TTAACGAGTCTATTTTCATAGAAAAATAATGGTGTGGGTAAAGGAA-TTTTATATTCTGAGATAT
645 TTAACGAGACTATTTTCATAGAAAAATAATGGTGTGGGTAAAGGAATTTTTATATTCTGA-ATAT
*
22152372 TTGAATTTTTGTTAGACAGGGTCAAAATGGT-TTTGGAGTCCCCTGTTCTGAATTTAGAAAATCA
709 TTGAATTTTTGTTAGACAGGGTCAAAATGGTCTTTGGAGCCCCCTGTTCTG-ATTTAGAAAATCA
22152436 TTAAAAATTGC
773 TTAAAAATTGC
* * * * * *
22152447 ACAAAAACAATTATGAGTTATAATTTATATTTCTAGACTCTTTAGTGAGTTTATTTTCTGTAGAA
1 ACAAAAATAATTATGATTTATAATTTATATGTCTAGATTCCTTAGTGAGTCTATTTTCTGTAGAA
* * *
22152512 ACAAGTAATAACATGTTATTCAAATAATCAAGGGAGGAGTAAGTTGTAATCATGAGTTATTTAAG
66 ACAAGTAATAACATGTTATTCAAATAATCAAGGGAGGAATAAGTTATAATCATGAGCTATTTAAG
*
22152577 TAAGCAAGTAAGTAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATG
131 TAAGCAAGTAAGAAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATG
* * * * *
22152642 ATATTTCTGAGTGTGATTATTTATGATAAATGTTGTTCTTTATTTACTTGTAAACTTACTAAGCT
196 AAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTTACTTGAAAACTTACTAACCT
* * *
22152707 TTATGCTTACTTTCTTTATTTTCCTTATTTTTATAGTATCGCCAAGTCAGTTCGAGGATCACACA
261 TTATGCTTACTTTCTTTATTGTCCTTATTTTTATAGTATCGCCAAGTCAGTTCGAGAATCACAAA
* *
22152772 GACGTCGGAGTTCTTCTCACACTTTATACAGACATCTCGGTATTATGTGATTTCAAAATGTGTAA
326 GACGTCGGAGTTCTTCGCACACTATATACAGACATCTCGGTATTATGTGATTTCAAAATGTGTAA
* *
22152837 AGCTATGGCATGTATAGAGACTTAGTCATTTTTGAGCTTGTTATATGATATGGCGAATGAGTAGC
391 AGCTATGGCATGTATAGAGACTTAGTCATTTTTGAGCGTGTTATATGATATGGAGAATGAGTAGC
*
22152902 TATTGCAATGTCTAATTAAGAACATGTGTGGTGTTATGAATGCCTAGGTGATAGTTTATACCTAG
456 TATTGCAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCTAGGTGATAGTTTATACCTAG
22152967 AAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGAGAACAGCAGTGACATGACTTTG
521 AAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGAGAACAGCAGTGACATGACTTTG
* *
22153032 AAAAATCACCAGGGATAGTATAAATGAATTAGAGAGTGAATGATATATAGAATTAAATCTTATCG
586 AAAAATCACCAGGGATAGTATAAATGAATTAGAGAGTGAATGATATATAGAATTAAAGCTTAACG
22153097 AGACTATTTTCATAGAAAAATAATGGTGTGGGTAAAGGAATTTTTATATTCTGAATATTTGAATT
651 AGACTATTTTCATAGAAAAATAATGGTGTGGGTAAAGGAATTTTTATATTCTGAATATTTGAATT
* *
22153162 TTTGTTAGACAGGGTCAGAATTGTCTTTGGAGCCCCCTGTTCTGATTTAGAAAATCATTAAAAAT
716 TTTGTTAGACAGGGTCAAAATGGTCTTTGGAGCCCCCTGTTCTGATTTAGAAAATCATTAAAAAT
**
22153227 TTT
781 TGC
*
22153230 A-ACAAAATAATTATGATTTATAATTTTTATGTCTAGATTCCTTAGTGAGTCTATTTTCTGTAGA
1 ACA-AAAATAATTATGATTTATAATTTATATGTCTAGATTCCTTAGTGAGTCTATTTTCTGTAGA
22153294 AACAAGT
65 AACAAGT
22153301 NNNNNNNNNN
Statistics
Matches: 801, Mismatches: 48, Indels: 14
0.93 0.06 0.02
Matches are distributed among these distances:
782 1 0.00
783 325 0.41
784 31 0.04
787 433 0.54
788 11 0.01
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (783 bp):
ACAAAAATAATTATGATTTATAATTTATATGTCTAGATTCCTTAGTGAGTCTATTTTCTGTAGAA
ACAAGTAATAACATGTTATTCAAATAATCAAGGGAGGAATAAGTTATAATCATGAGCTATTTAAG
TAAGCAAGTAAGAAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATG
AAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTTACTTGAAAACTTACTAACCT
TTATGCTTACTTTCTTTATTGTCCTTATTTTTATAGTATCGCCAAGTCAGTTCGAGAATCACAAA
GACGTCGGAGTTCTTCGCACACTATATACAGACATCTCGGTATTATGTGATTTCAAAATGTGTAA
AGCTATGGCATGTATAGAGACTTAGTCATTTTTGAGCGTGTTATATGATATGGAGAATGAGTAGC
TATTGCAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCTAGGTGATAGTTTATACCTAG
AAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGAGAACAGCAGTGACATGACTTTG
AAAAATCACCAGGGATAGTATAAATGAATTAGAGAGTGAATGATATATAGAATTAAAGCTTAACG
AGACTATTTTCATAGAAAAATAATGGTGTGGGTAAAGGAATTTTTATATTCTGAATATTTGAATT
TTTGTTAGACAGGGTCAAAATGGTCTTTGGAGCCCCCTGTTCTGATTTAGAAAATCATTAAAAAT
TGC
Found at i:22154610 original size:12 final size:12
Alignment explanation
Indices: 22154593--22154643 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
22154583 ATGAGTTATT
22154593 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
22154605 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
22154617 TAAGTGAGTAAG
1 TAAGTAAGCAAG
22154629 TAAAG-AAGCAAG
1 T-AAGTAAGCAAG
22154641 TAA
1 TAA
22154644 AGATTCTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
11 2 0.06
12 27 0.84
13 3 0.09
ACGTcount: A:0.53, C:0.06, G:0.24, T:0.18
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:22154641 original size:20 final size:20
Alignment explanation
Indices: 22154603--22154641 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22154593 TAAGTAAGCA
*
22154603 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGCAAGTG
*
22154623 AGTAAGTAAAGAAGCAAGT
1 AGTAAGTAAACAAGCAAGT
22154642 AAAGATTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.05, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGCAAGTG
Found at i:22155206 original size:12 final size:12
Alignment explanation
Indices: 22155189--22155227 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
22155179 ATGAGTTATT
22155189 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
22155201 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
22155213 TAAGTGAGTAAG
1 TAAGTAAGCAAG
22155225 TAA
1 TAA
22155228 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:22156688 original size:782 final size:783
Alignment explanation
Indices: 22155156--22156698 Score: 2601
Period size: 782 Copynumber: 2.0 Consensus size: 783
22155146 GAAAATTCAG
* *
22155156 CAAGGGCGGAGTAAGTTATGATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAG
1 CAAGGGAGGAGTAAGTTATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAG
*
22155221 TAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATGAAATTTATGAGTGTGATTATTTATGATA
66 TAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATGAAAGTTATGAGTGTGATTATTTATGATA
* * *
22155286 AATATTGTTATTTATTTACTTCTAAACTTACTATGCTTTATGCTTACTTTCTGTATTTTCTTTAT
131 AATATTGTTATTTAGTTACTTCTAAACTTACTAAGCTTTATGCTTACTTTCTGTATTTTCCTTAT
* * * *
22155351 TTTTATAGTATCGCCAAGTTAGTTCAAGGATCATAAAGATGTCGGAGTTCTTCTCACACTATATA
196 TTTTATAGTATCGCCAAGTCAATTCAAGGATCACAAAGACGTCGGAGTTCTTCTCACACTATATA
* *
22155416 CAGACATCTCGGTATTATGTGATTTCAAAATATGCAAAGTTATGGCATGTATAGACACTTAGCCA
261 CAGACATCTCAGTATTATGTGATTTCAAAATATGCAAAGCTATGGCATGTATAGACACTTAGCCA
* * *
22155481 TTTTGAGCGTGTTTATATATTATGGCGAATGGTTAGCTATTGCAATGGCTAATTATGAACATGTG
326 TTTTGAGCGTGTTTATATATTATGGCGAATGGTCAGCTATTGCAATGGCTAATTAAGAACATGCG
22155546 TGGTGTTATGAATGCCTAGGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATTTGCAAT
391 TGGTGTTATGAATGCCTAGGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATTTGCAAT
**
22155611 GAAACAGTTTTGGGACAACAGTAGCGACATGACTTTGAAAAATCACCAGCGATAGTATAAATGAA
456 GAAACAGTTTTGGGACAACAACAGCGACATGACTTTGAAAAATCACCAGCGATAGTATAAATGAA
* **
22155676 TTAGAGAGTGAATCATATATAGAATTAAAGCTTATCGAGTCTATTTTCATAGAAAAATAATGGTG
521 TTAGAGAGTGAATCATATATAGAATTAAAGCTTATCGAGTCTATTTTCATAGAAAAATAACGGCA
* * *
22155741 TGGGTAAAGGAATTTTATATTTTGAGATATTTGAATTTTTGTTAGACAGGTCAGAATGGTTTTTG
586 TGGGTAAAGGAATTTTATATTCTAAGATATTTGAATTTTGGTTAGACAGGTCAGAATGGTTTTTG
*
22155806 GAGTCCCCTGTTCTGAATTTAGAAAATCATTAAAAATTGTACAAAAATAATTATGAGTTATAATT
651 GAGTCCCCTATTCTGAATTTAGAAAATCATTAAAAATTGTACAAAAATAATTATGAGTTATAATT
* *
22155871 TATATTTCTAGATTCTTTAGTGAGTTTATTTTCTGTAGAAACAAGTAATAACTTGTTATTTATGT
716 TATATGTCTAGATTCTTTAGTGAGTCTATTTTCTGTAGAAACAAGTAATAACTTGTTATTTATGT
22155936 AAT
781 AAT
*
22155939 CAAGGGAGGAGTAAGTTATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTACGTGAG
1 CAAGGGAGGAGTAAGTTATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAG
22156004 TAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATGAAAGTTATGAGTGTGATTATTTATGATA
66 TAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATGAAAGTTATGAGTGTGATTATTTATGATA
* * *
22156069 AATGTTGTTATTTAGTTACTTGTAAACTTACTAAGCTTTATGCTTACTTTCTTTATTTTCCTTA-
131 AATATTGTTATTTAGTTACTTCTAAACTTACTAAGCTTTATGCTTACTTTCTGTATTTTCCTTAT
* *
22156133 TTTTATAGTATCGCCAAGTCAATTCGAGGATCACAAAGGCGTCGGAGTTCTTCTCACACTATATA
196 TTTTATAGTATCGCCAAGTCAATTCAAGGATCACAAAGACGTCGGAGTTCTTCTCACACTATATA
* * * * *
22156198 CAGACATCTCAGTATTATGTGATTTCGAAATGTGTAAAGCTATGGCATGTATAGAGACTTAGTCA
261 CAGACATCTCAGTATTATGTGATTTCAAAATATGCAAAGCTATGGCATGTATAGACACTTAGCCA
* * *
22156263 TTTTGAGCTTTTTTATATGA-TATGGTGAATGGTCAGCTATTGCAATGGCTAATTAAGAACATGC
326 TTTTGAGCGTGTTTATAT-ATTATGGCGAATGGTCAGCTATTGCAATGGCTAATTAAGAACATGC
*
22156327 GTGGTGTTATGAATGCCTAGGTGATAGTTTATGCCTAGAAAATATGAAAGAGT-AAAATTCTGCA
390 GTGGTGTTATGAATGCCTAGGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATT-TGCA
* *
22156391 ATGAAACAGTTTTGGGACAACAACAGTGACATGACTTTGAAAAATCACCAGGGATAGTATAAATG
454 ATGAAACAGTTTTGGGACAACAACAGCGACATGACTTTGAAAAATCACCAGCGATAGTATAAATG
* *
22156456 AATTAGAGAGTGAATGATATATAGAATTAAAGCTTATCGAGTCTATTTTCATAGAAATATAACGG
519 AATTAGAGAGTGAATCATATATAGAATTAAAGCTTATCGAGTCTATTTTCATAGAAAAATAACGG
22156521 CATGGGTAAAGGAATTTTATATTCTAAGATATTTGAATTTTGGTTAGACAGGTTCAGAATGGTTT
584 CATGGGTAAAGGAATTTTATATTCTAAGATATTTGAATTTTGGTTAGACAGG-TCAGAATGGTTT
*
22156586 TTTGAGTCCCCTATTCTGAATTTAGAAAATCATTAAAAATTGTA-AAAAGATAATTATGAGTTAT
648 TTGGAGTCCCCTATTCTGAATTTAGAAAATCATTAAAAATTGTACAAAA-ATAATTATGAGTTAT
22156650 AATTTATATGTCTAGATTCTTTAGTGAGTCTA-TTTCTGTAGAAACAAGT
712 AATTTATATGTCTAGATTCTTTAGTGAGTCTATTTTCTGTAGAAACAAGT
22156699 GAGAACACCA
Statistics
Matches: 710, Mismatches: 46, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
781 6 0.01
782 420 0.59
783 284 0.40
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (783 bp):
CAAGGGAGGAGTAAGTTATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAG
TAAGTAAAGAAGCGAGTAAAGATTCTAATGTTTGATGAAAGTTATGAGTGTGATTATTTATGATA
AATATTGTTATTTAGTTACTTCTAAACTTACTAAGCTTTATGCTTACTTTCTGTATTTTCCTTAT
TTTTATAGTATCGCCAAGTCAATTCAAGGATCACAAAGACGTCGGAGTTCTTCTCACACTATATA
CAGACATCTCAGTATTATGTGATTTCAAAATATGCAAAGCTATGGCATGTATAGACACTTAGCCA
TTTTGAGCGTGTTTATATATTATGGCGAATGGTCAGCTATTGCAATGGCTAATTAAGAACATGCG
TGGTGTTATGAATGCCTAGGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATTTGCAAT
GAAACAGTTTTGGGACAACAACAGCGACATGACTTTGAAAAATCACCAGCGATAGTATAAATGAA
TTAGAGAGTGAATCATATATAGAATTAAAGCTTATCGAGTCTATTTTCATAGAAAAATAACGGCA
TGGGTAAAGGAATTTTATATTCTAAGATATTTGAATTTTGGTTAGACAGGTCAGAATGGTTTTTG
GAGTCCCCTATTCTGAATTTAGAAAATCATTAAAAATTGTACAAAAATAATTATGAGTTATAATT
TATATGTCTAGATTCTTTAGTGAGTCTATTTTCTGTAGAAACAAGTAATAACTTGTTATTTATGT
AAT
Found at i:22160395 original size:51 final size:51
Alignment explanation
Indices: 22160319--22160421 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
22160309 AGTGAACTTG
*
22160319 TACCAAATATAATTACCTGAAAAAGAGAAAAGAAAATCATGGACAGTTGGA
1 TACCAAATATAACTACCTGAAAAAGAGAAAAGAAAATCATGGACAGTTGGA
* ** **
22160370 TACCAGATATAACTACCTGAAAAAGAGGGAAGAAAATCATGGATTGTTGGA
1 TACCAAATATAACTACCTGAAAAAGAGAAAAGAAAATCATGGACAGTTGGA
22160421 T
1 T
22160422 TTACTCTAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (51 bp):
TACCAAATATAACTACCTGAAAAAGAGAAAAGAAAATCATGGACAGTTGGA
Found at i:22169896 original size:21 final size:21
Alignment explanation
Indices: 22169849--22169899 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
22169839 CATCTCCCCA
*
22169849 ATTAGACTTAATAGGTGACAT
1 ATTAGTCTTAATAGGTGACAT
22169870 ATTAGTCTTAATAGGTGACAT
1 ATTAGTCTTAATAGGTGACAT
22169891 ATTAGTCTT
1 ATTAGTCTT
22169900 TCAATCGGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (21 bp):
ATTAGTCTTAATAGGTGACAT
Found at i:22172964 original size:2 final size:2
Alignment explanation
Indices: 22172959--22173000 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
22172949 ATATATATAT
*
22172959 AG AG AG AG AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22173001 CACGTAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22173969 original size:21 final size:21
Alignment explanation
Indices: 22173922--22173972 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
22173912 CATCTCCCCA
*
22173922 ATTAGACTTAATAGGTGACAT
1 ATTAGTCTTAATAGGTGACAT
22173943 ATTAGTCTTAATAGGTGACAT
1 ATTAGTCTTAATAGGTGACAT
22173964 ATTAGTCTT
1 ATTAGTCTT
22173973 TCAATCGGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (21 bp):
ATTAGTCTTAATAGGTGACAT
Found at i:22177037 original size:2 final size:2
Alignment explanation
Indices: 22177032--22177073 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
22177022 ATATATATAT
*
22177032 AG AG AG AG AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22177074 CACGTAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22181653 original size:21 final size:21
Alignment explanation
Indices: 22181610--22181656 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
22181600 GCGGCGGTTA
* *
22181610 TGGTTCCTCCGACGGGGATTT
1 TGGTTCCTCCGAAGGGCATTT
22181631 TGGTTCCTCCGATAGGGCA-TT
1 TGGTTCCTCCGA-AGGGCATTT
22181652 TGGTT
1 TGGTT
22181657 TTCGGAGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.11, C:0.21, G:0.32, T:0.36
Consensus pattern (21 bp):
TGGTTCCTCCGAAGGGCATTT
Found at i:22182598 original size:7 final size:7
Alignment explanation
Indices: 22182588--22182637 Score: 73
Period size: 7 Copynumber: 6.7 Consensus size: 7
22182578 TTATATACAT
22182588 AATACTA
1 AATACTA
22182595 AATACTAA
1 AATACT-A
22182603 ATACTACTA
1 A-A-TACTA
22182612 AATACTA
1 AATACTA
22182619 AATACTA
1 AATACTA
22182626 AATACTA
1 AATACTA
22182633 AATAC
1 AATAC
22182638 CAATCGACTA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
7 30 0.75
8 3 0.08
9 3 0.08
10 4 0.10
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:22182843 original size:20 final size:20
Alignment explanation
Indices: 22182806--22182843 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22182796 ATTATTTTTA
*
22182806 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
22182826 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
22182844 TACCTCATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:22184301 original size:339 final size:339
Alignment explanation
Indices: 22183681--22184360 Score: 1360
Period size: 339 Copynumber: 2.0 Consensus size: 339
22183671 ATATGTGCTG
22183681 ATTATTAAGACGAGTCAATTCTCCGGCCATTGATTTAATAATAAAGAAAAAATTTTACGATTTAA
1 ATTATTAAGACGAGTCAATTCTCCGGCCATTGATTTAATAATAAAGAAAAAATTTTACGATTTAA
22183746 AAAAATTTTAAAAAATAAAAATTATTTAAAATTATTTAAAAATAGGGATTTAAGAGAAATTTAAG
66 AAAAATTTTAAAAAATAAAAATTATTTAAAATTATTTAAAAATAGGGATTTAAGAGAAATTTAAG
22183811 AGGAAATTGAGAGCAAATTGAGATTAAATATGGATTTGAGAGAAATTTGGAAGAAATTTGAGAGA
131 AGGAAATTGAGAGCAAATTGAGATTAAATATGGATTTGAGAGAAATTTGGAAGAAATTTGAGAGA
22183876 GGATTAGTTTGTGAAAAAAAATAAAGAGTGGGGGGTATTTATAGATTTTTTTTGACCGTTGGGGG
196 GGATTAGTTTGTGAAAAAAAATAAAGAGTGGGGGGTATTTATAGATTTTTTTTGACCGTTGGGGG
22183941 GCAACGGTCAAAAAAATGACCGTTGCACTGTTCATGCGCGGGGAAATCGCGTCCCCAGGGGCGCG
261 GCAACGGTCAAAAAAATGACCGTTGCACTGTTCATGCGCGGGGAAATCGCGTCCCCAGGGGCGCG
22184006 CTACGTGGCAACAA
326 CTACGTGGCAACAA
22184020 ATTATTAAGACGAGTCAATTCTCCGGCCATTGATTTAATAATAAAGAAAAAATTTTACGATTTAA
1 ATTATTAAGACGAGTCAATTCTCCGGCCATTGATTTAATAATAAAGAAAAAATTTTACGATTTAA
22184085 AAAAATTTTAAAAAATAAAAATTATTTAAAATTATTTAAAAATAGGGATTTAAGAGAAATTTAAG
66 AAAAATTTTAAAAAATAAAAATTATTTAAAATTATTTAAAAATAGGGATTTAAGAGAAATTTAAG
22184150 AGGAAATTGAGAGCAAATTGAGATTAAATATGGATTTGAGAGAAATTTGGAAGAAATTTGAGAGA
131 AGGAAATTGAGAGCAAATTGAGATTAAATATGGATTTGAGAGAAATTTGGAAGAAATTTGAGAGA
22184215 GGATTAGTTTGTGAAAAAAAATAAAGAGTGGGGGGTATTTATAGATTTTTTTTGACCGTTGGGGG
196 GGATTAGTTTGTGAAAAAAAATAAAGAGTGGGGGGTATTTATAGATTTTTTTTGACCGTTGGGGG
22184280 GCAACGGTCAAAAAAATGACCGTTGCACTGTTCATGCGCGGGGAAATCGCGTCCCCAGGGGCGCG
261 GCAACGGTCAAAAAAATGACCGTTGCACTGTTCATGCGCGGGGAAATCGCGTCCCCAGGGGCGCG
22184345 CTACGTGGCAACAA
326 CTACGTGGCAACAA
22184359 AT
1 AT
22184361 CGCGTCCACG
Statistics
Matches: 341, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
339 341 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (339 bp):
ATTATTAAGACGAGTCAATTCTCCGGCCATTGATTTAATAATAAAGAAAAAATTTTACGATTTAA
AAAAATTTTAAAAAATAAAAATTATTTAAAATTATTTAAAAATAGGGATTTAAGAGAAATTTAAG
AGGAAATTGAGAGCAAATTGAGATTAAATATGGATTTGAGAGAAATTTGGAAGAAATTTGAGAGA
GGATTAGTTTGTGAAAAAAAATAAAGAGTGGGGGGTATTTATAGATTTTTTTTGACCGTTGGGGG
GCAACGGTCAAAAAAATGACCGTTGCACTGTTCATGCGCGGGGAAATCGCGTCCCCAGGGGCGCG
CTACGTGGCAACAA
Found at i:22185526 original size:9 final size:9
Alignment explanation
Indices: 22185466--22185526 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
22185456 GACATGTGCC
*
22185466 AAAAATGAT
1 AAAAATTAT
22185475 AAAAA--AT
1 AAAAATTAT
*
22185482 AAAAATAAT
1 AAAAATTAT
22185491 AAAAATTATT
1 AAAAATTA-T
**
22185501 AAATTTTAAT
1 AAAAATT-AT
22185511 AAAAATTAT
1 AAAAATTAT
22185520 AAAAATT
1 AAAAATT
22185527 TCGTAAGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
7 7 0.16
9 23 0.53
10 12 0.28
11 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:22185813 original size:9 final size:9
Alignment explanation
Indices: 22185789--22185908 Score: 57
Period size: 9 Copynumber: 12.7 Consensus size: 9
22185779 AAATTTTACC
22185789 ATTTTTATA
1 ATTTTTATA
* *
22185798 TTATTTTATG
1 AT-TTTTATA
22185808 ATTTTTATA
1 ATTTTTATA
*
22185817 ATTTTTTTTCTA
1 A---TTTTTATA
22185829 ATTTTTAATA
1 ATTTTT-ATA
*
22185839 TGTTTTTAT-
1 -ATTTTTATA
22185848 ATTTTTATTAA
1 ATTTTTA-T-A
* *
22185859 AATTTAATA
1 ATTTTTATA
22185868 ATTTTTATA
1 ATTTTTATA
** *
22185877 ACCTTTATTG
1 ATTTTTA-TA
22185887 ATTTTTAT-
1 ATTTTTATA
22185895 -TTTTTATA
1 ATTTTTATA
22185903 ATTTTT
1 ATTTTT
22185909 TACTACATGT
Statistics
Matches: 82, Mismatches: 17, Indels: 24
0.67 0.14 0.20
Matches are distributed among these distances:
7 7 0.09
8 6 0.07
9 33 0.40
10 18 0.22
11 10 0.12
12 8 0.10
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (9 bp):
ATTTTTATA
Done.