Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 68 of 141
Found at i:22185823 original size:19 final size:19
Alignment explanation
Indices: 22185743--22185823 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
22185733 TTAAAGGGCA
*
22185743 TTTTTATGCA-TTTTATACT
1 TTTTTATG-ATTTTTATAAT
* *
22185762 TTTTTATGACTTTTATAAA
1 TTTTTATGATTTTTATAAT
* **
22185781 ATTTTACCATTTTTAT-AT
1 TTTTTATGATTTTTATAAT
22185799 TATTTTATGATTTTTATAAT
1 T-TTTTATGATTTTTATAAT
22185819 TTTTT
1 TTTTT
22185824 TTCTAATTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
18 2 0.04
19 44 0.90
20 3 0.06
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (19 bp):
TTTTTATGATTTTTATAAT
Found at i:22188702 original size:24 final size:26
Alignment explanation
Indices: 22188653--22188703 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 26
22188643 AATTAATTTT
22188653 TAGTGAAGATAGGTCGGAACTGTTAAA
1 TAGTGAAGATAGG-CGGAACTGTTAAA
22188680 TAGTGAA-ATAGG-GGAAACT-TTAAA
1 TAGTGAAGATAGGCGG-AACTGTTAAA
22188704 GAATAAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
24 7 0.30
25 4 0.17
26 5 0.22
27 7 0.30
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGTGAAGATAGGCGGAACTGTTAAA
Found at i:22189552 original size:21 final size:21
Alignment explanation
Indices: 22189526--22189593 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
22189516 TTGTTTTGAG
22189526 TACTGAATTGAATTGTGAAGT
1 TACTGAATTGAATTGTGAAGT
* *
22189547 TACTGAA-T--ATTGTTATGT
1 TACTGAATTGAATTGTGAAGT
* *
22189565 GTACTGCATTGAATTGTGAAAT
1 -TACTGAATTGAATTGTGAAGT
*
22189587 TATTGAA
1 TACTGAA
22189594 GTAATGAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 8 0.23
19 6 0.17
20 2 0.06
21 12 0.34
22 7 0.20
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (21 bp):
TACTGAATTGAATTGTGAAGT
Found at i:22189557 original size:40 final size:40
Alignment explanation
Indices: 22189490--22189593 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
22189480 AGACTGACAT
* * * *
22189490 TGAACTGAATTATGGAA-TACTGAATATTGTTTTGAGTAC
1 TGAATTGAATTGTGAAATTACTGAATATTGTTATGAGTAC
* *
22189529 TGAATTGAATTGTGAAGTTACTGAATATTGTTATGTGTAC
1 TGAATTGAATTGTGAAATTACTGAATATTGTTATGAGTAC
* *
22189569 TGCATTGAATTGTGAAATTATTGAA
1 TGAATTGAATTGTGAAATTACTGAA
22189594 GTAATGAATT
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
39 13 0.24
40 42 0.76
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.40
Consensus pattern (40 bp):
TGAATTGAATTGTGAAATTACTGAATATTGTTATGAGTAC
Found at i:22189865 original size:45 final size:45
Alignment explanation
Indices: 22189798--22189884 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
22189788 CCGACTACTT
* * *
22189798 TTACTGTTACTGATTTGACACTTTGTGTATCGAATACTATTAATC
1 TTACTATTACCGATTCGACACTTTGTGTATCGAATACTATTAATC
*
22189843 TTACTATTACCGATTCGACACTTTGTGTGTCGAATACTATTA
1 TTACTATTACCGATTCGACACTTTGTGTATCGAATACTATTA
22189885 CTGTTATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (45 bp):
TTACTATTACCGATTCGACACTTTGTGTATCGAATACTATTAATC
Found at i:22189898 original size:39 final size:39
Alignment explanation
Indices: 22189793--22190034 Score: 153
Period size: 39 Copynumber: 6.1 Consensus size: 39
22189783 ATATGCCGAC
* * *
22189793 TACTTTTACTGTTA-CTGATTTGACACTTTGTGTATCGAA
1 TACTATTACTGTTATC-GATTCGACACTTTGTGTGTCGAA
22189832 TACTATTAATCT-TACTATTACCGATTCGACACTTTGTGTGTCGAA
1 TACTATT-A-CTGT--TA-T--CGATTCGACACTTTGTGTGTCGAA
* *
22189877 TACTATTACTGTTATCAATTCGGCACTTTGTGTGTCGAA
1 TACTATTACTGTTATCGATTCGACACTTTGTGTGTCGAA
* * *
22189916 TATTGTTACCGTTATTGTTACCGATTC-AGCACTTTGTGTGTCG--
1 TA---CTA---TTACTGTTATCGATTCGA-CACTTTGTGTGTCGAA
* *
22189959 -A--A-TACTGTTATTGATTCGGCACTTTGTGTGTCGAA
1 TACTATTACTGTTATCGATTCGACACTTTGTGTGTCGAA
* * *
22189994 TACTGTTACTATTA-CTGATTCGTCACTTTGTGTGTCGAA
1 TACTATTACTGTTATC-GATTCGACACTTTGTGTGTCGAA
22190033 TA
1 TA
22190035 TTGTTACCGT
Statistics
Matches: 161, Mismatches: 18, Indels: 48
0.71 0.08 0.21
Matches are distributed among these distances:
33 26 0.16
36 1 0.01
37 1 0.01
39 61 0.38
40 2 0.01
41 3 0.02
42 7 0.04
43 2 0.01
44 2 0.01
45 55 0.34
46 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (39 bp):
TACTATTACTGTTATCGATTCGACACTTTGTGTGTCGAA
Found at i:22189975 original size:33 final size:33
Alignment explanation
Indices: 22189938--22190001 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
22189928 TATTGTTACC
22189938 GATTCAGCACTTTGTGTGTCGAATACTGTTATT
1 GATTCAGCACTTTGTGTGTCGAATACTGTTATT
*
22189971 GATTCGGCACTTTGTGTGTCGAATACTGTTA
1 GATTCAGCACTTTGTGTGTCGAATACTGTTA
22190002 CTATTACTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (33 bp):
GATTCAGCACTTTGTGTGTCGAATACTGTTATT
Found at i:22190015 original size:117 final size:116
Alignment explanation
Indices: 22189854--22190087 Score: 344
Period size: 117 Copynumber: 2.0 Consensus size: 116
22189844 TACTATTACC
*
22189854 GATTCGACACTTTGTGTGTCGAATACTATTACTGTTATCAATTCGGCACTTTGTGTGTCGAATAT
1 GATTCGACACTTTGTGTGTCGAATACTATTACTATTATCAATTCGGCACTTTGTGTGTCGAATAT
* * *
22189919 TGTTACCGTTATTGTTACCGATTCAGCACTTTGTGTGTCGAATACTGTTATT
66 TGTTACCG-TACTGTTACAGATTCAGCACTTTGTGTGTCAAATACTGTTATT
* * * *
22189971 GATTCGGCACTTTGTGTGTCGAATACTGTTACTATTA-CTGATTCGTCACTTTGTGTGTCGAATA
1 GATTCGACACTTTGTGTGTCGAATACTATTACTATTATC-AATTCGGCACTTTGTGTGTCGAATA
** *
22190035 TTGTTACCGTACTGTTACAGATTTGGCACTTTGTGTGTTAAATACTGTTATT
65 TTGTTACCGTACTGTTACAGATTCAGCACTTTGTGTGTCAAATACTGTTATT
22190087 G
1 G
22190088 TTACTGTTAC
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
116 39 0.37
117 66 0.63
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (116 bp):
GATTCGACACTTTGTGTGTCGAATACTATTACTATTATCAATTCGGCACTTTGTGTGTCGAATAT
TGTTACCGTACTGTTACAGATTCAGCACTTTGTGTGTCAAATACTGTTATT
Found at i:22190040 original size:39 final size:39
Alignment explanation
Indices: 22189843--22190093 Score: 201
Period size: 39 Copynumber: 6.3 Consensus size: 39
22189833 ACTATTAATC
* * *
22189843 TTACTATTACCGATTCGACACTTTGTGTGTCGAATACTA
1 TTACTATTACTGATTCGGCACTTTGTGTGTCGAATACTG
* * *
22189882 TTACTGTTA-TCAATTCGGCACTTTGTGTGTCGAATATTG
1 TTACTATTACT-GATTCGGCACTTTGTGTGTCGAATACTG
* *
22189921 TTACCGTTATTGTTACCGATTCAGCACTTTGTGTGTCGAATACTG
1 TTA-C--TA---TTACTGATTCGGCACTTTGTGTGTCGAATACTG
22189966 -T--TA-T--TGATTCGGCACTTTGTGTGTCGAATACTG
1 TTACTATTACTGATTCGGCACTTTGTGTGTCGAATACTG
* *
22189999 TTACTATTACTGATTCGTCACTTTGTGTGTCGAATATTG
1 TTACTATTACTGATTCGGCACTTTGTGTGTCGAATACTG
* * **
22190038 TTACCGTACTGTTACAGATTTGGCACTTTGTGTGTTAAATACTG
1 TTA-C-TA---TTACTGATTCGGCACTTTGTGTGTCGAATACTG
* *
22190082 TTATTGTTACTG
1 TTACTATTACTG
22190094 TTACTTACTG
Statistics
Matches: 169, Mismatches: 24, Indels: 38
0.73 0.10 0.16
Matches are distributed among these distances:
33 27 0.16
34 1 0.01
35 1 0.01
36 2 0.01
37 1 0.01
39 72 0.43
40 2 0.01
41 2 0.01
42 2 0.01
44 31 0.18
45 28 0.17
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.43
Consensus pattern (39 bp):
TTACTATTACTGATTCGGCACTTTGTGTGTCGAATACTG
Found at i:22190096 original size:22 final size:23
Alignment explanation
Indices: 22190070--22190112 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
22190060 GCACTTTGTG
22190070 TGTTAAATACTG-TTATTGTTAC
1 TGTTAAATACTGATTATTGTTAC
**
22190092 TGTTACTTACTGATTATTGTT
1 TGTTAAATACTGATTATTGTT
22190113 TAGGTACTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.53
Consensus pattern (23 bp):
TGTTAAATACTGATTATTGTTAC
Found at i:22194721 original size:13 final size:13
Alignment explanation
Indices: 22194705--22194734 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22194695 TCCATAAATC
22194705 CACAACATATTTT
1 CACAACATATTTT
*
22194718 CACAATATATTTT
1 CACAACATATTTT
22194731 CACA
1 CACA
22194735 TATAAATTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (13 bp):
CACAACATATTTT
Found at i:22202871 original size:20 final size:20
Alignment explanation
Indices: 22202846--22202885 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22202836 AATATTTTCC
*
22202846 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
22202866 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
22202886 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:22202891 original size:34 final size:35
Alignment explanation
Indices: 22202834--22202900 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
22202824 CAAACAGCAG
*
22202834 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
22202869 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
22202901 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:22202892 original size:14 final size:14
Alignment explanation
Indices: 22202869--22202908 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
22202859 ACAGAAAAGT
*
22202869 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
22202883 AAATCATTTTACGG
1 AAAACATTTTACAG
22202897 AAAACATTTTAC
1 AAAACATTTTAC
22202909 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:22203324 original size:25 final size:25
Alignment explanation
Indices: 22203296--22203345 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
22203286 CCACCATCTT
22203296 TTAAATTGACTAAATTTTCATTTAA
1 TTAAATTGACTAAATTTTCATTTAA
22203321 TTAAATTGACTAAATTTTCATTTAA
1 TTAAATTGACTAAATTTTCATTTAA
22203346 AGTCTTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (25 bp):
TTAAATTGACTAAATTTTCATTTAA
Found at i:22204445 original size:11 final size:11
Alignment explanation
Indices: 22204431--22204486 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
22204421 ATATCCAAAT
*
22204431 AATAACTATAA
1 AATAACAATAA
* *
22204442 AATAATAGTAA
1 AATAACAATAA
*
22204453 AATAACAACAA
1 AATAACAATAA
*
22204464 AATAAC-ATCA
1 AATAACAATAA
22204474 AATAACAATAA
1 AATAACAATAA
22204485 AA
1 AA
22204487 AAGAGTGTCG
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
10 8 0.23
11 27 0.77
ACGTcount: A:0.68, C:0.11, G:0.02, T:0.20
Consensus pattern (11 bp):
AATAACAATAA
Found at i:22204456 original size:22 final size:21
Alignment explanation
Indices: 22204431--22204486 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
22204421 ATATCCAAAT
* *
22204431 AATAACTATAAAATAATAGTAA
1 AATAACAATAAAATAACA-TAA
* *
22204453 AATAACAACAAAATAACATCA
1 AATAACAATAAAATAACATAA
22204474 AATAACAATAAAA
1 AATAACAATAAAA
22204487 AAGAGTGTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 14 0.48
22 15 0.52
ACGTcount: A:0.68, C:0.11, G:0.02, T:0.20
Consensus pattern (21 bp):
AATAACAATAAAATAACATAA
Found at i:22205908 original size:15 final size:17
Alignment explanation
Indices: 22205878--22205910 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22205868 TGTTAGCACT
22205878 TAAAATATATTATATAG
1 TAAAATATATTATATAG
22205895 TAAAATA-ATATATATA
1 TAAAATATAT-TATATA
22205911 CAAAAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAAATATATTATATAG
Found at i:22205952 original size:3 final size:3
Alignment explanation
Indices: 22205944--22206001 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
22205934 AACTAATACA
* * * * * * *
22205944 AAT AAT AAT ACT AAT AAT TAT AGT AAC ATT AAT AAT AAT AAC AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22205992 AAT AAT AAT A
1 AAT AAT AAT A
22206002 GTTAAGTAAT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22205956 original size:18 final size:18
Alignment explanation
Indices: 22205925--22205959 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22205915 AAATGTAAAT
22205925 AAATATATAAACTAATAC
1 AAATATATAAACTAATAC
22205943 AAATA-ATAATACTAATA
1 AAATATATAA-ACTAATA
22205960 ATTATAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATATATAAACTAATAC
Found at i:22205976 original size:18 final size:18
Alignment explanation
Indices: 22205955--22206003 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
22205945 ATAATAATAC
* *
22205955 TAATAATTATAGTAACAT
1 TAATAATAATAGTAACAA
**
22205973 TAATAATAATAACAACAA
1 TAATAATAATAGTAACAA
22205991 TAATAATAATAGT
1 TAATAATAATAGT
22206004 TAAGTAATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (18 bp):
TAATAATAATAGTAACAA
Found at i:22205985 original size:15 final size:15
Alignment explanation
Indices: 22205944--22205999 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
22205934 AACTAATACA
22205944 AATAATAAT-ACTAAT
1 AATAATAATAAC-AAT
* * *
22205959 AATTATAGTAACATT
1 AATAATAATAACAAT
*
22205974 AATAATAATAACAAC
1 AATAATAATAACAAT
22205989 AATAATAATAA
1 AATAATAATAA
22206000 TAGTTAAGTA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
15 31 0.94
16 2 0.06
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (15 bp):
AATAATAATAACAAT
Found at i:22207386 original size:5 final size:5
Alignment explanation
Indices: 22207376--22207402 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
22207366 AAAAATCTTT
22207376 ATTCG ATTCG ATTCG ATTCG ATTCG AT
1 ATTCG ATTCG ATTCG ATTCG ATTCG AT
22207403 CGAATGCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (5 bp):
ATTCG
Found at i:22208700 original size:100 final size:100
Alignment explanation
Indices: 22208563--22209431 Score: 998
Period size: 100 Copynumber: 8.7 Consensus size: 100
22208553 TAACTCGTAA
* * * *
22208563 CTTTAATCCTTTTAACTGTAATGTTGGGGAAGCAAGATTCTCCGTTGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
*
22208628 CTGCACCGCCTGGGGAATAAGATTCGCTGTTGTAG
66 CTGCACCGCCTAGGGAATAAGATTCGCTGTTGTAG
* * ** *
22208663 CTTTAATCTTTTTAACTGCAATGTCGGGGCAGTAAGATTTGCCGTTGTGGCTTTAATCTATTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* *
22208728 CTGCACTGCC-AGGGAAGTAAGATTCG-TCGTTGTGG
66 CTGCACCGCCTAGGGAA-TAAGATTCGCT-GTTGTAG
* * *
22208763 CTTTAATCTTTTTAACTGTAATGTCGGGGAAGCAGGATTCACCGTTGTGGCTTTAATCTATTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* * *
22208828 CTGCATCGCCTAGGGAGTAAGATTCCCTGTTGTAG
66 CTGCACCGCCTAGGGAATAAGATTCGCTGTTGTAG
* * ** *
22208863 TTTTAATCTTTTTAACTGCAATGTCGGGGCAGCAAGATTTGCCGTTATGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* ** * *
22208928 CTGCACCGCC-AGGGAAGTAAGATTCACCATTTTGG
66 CTGCACCGCCTAGGGAA-TAAGATTCGCTGTTGTAG
* *
22208963 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCTA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* * *
22209028 CTGCATCGCCTAGGGAGTAAGATTCG-TCGTTGTGG
66 CTGCACCGCCTAGGGAATAAGATTCGCT-GTTGTAG
* * * * * * *
22209063 CTTTAATCATTTTAACTGCAATATCAGGGAGGCGAGATTCACCGATGTGGCTTTAATCTGTTCCT
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* * * * *
22209128 CTGCACCGCC-AGTGAAGTAGGATTTG-TCGCTGTGG
66 CTGCACCGCCTAGGGAA-TAAGATTCGCT-GTTGTAG
* * * * * *
22209163 CTTTAATCTTTTTTTAACTGCAATGTCAGGAAAGCGAGATTCACCGATGTTGCTTTAATCTATTC
1 CTTTAATC--TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTC
** * * *
22209228 CACTGCA-CTACAAGGGAGGTAAGATTCGCTGCTGTAG
64 CACTGCACCGCCTAGGGA-ATAAGATTCGCTGTTGTAG
* * * *
22209265 CTTTAATCTTTCTAACTGTAATGTTGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCG
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
* * *
22209330 CTGCATCGCCT-GAGGAGTAAGATTCGCTGCTGTAG
66 CTGCACCGCCTAG-GGAATAAGATTCGCTGTTGTAG
* * *
22209365 CTTTAATCTTTTGAACTACAATGTCGGGGAAGCAAGATTCACCGTTGTGGTTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
22209430 CT
66 CT
22209432 ACATCGCTTG
Statistics
Matches: 657, Mismatches: 97, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
99 15 0.02
100 543 0.83
101 18 0.03
102 80 0.12
103 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
CTGCACCGCCTAGGGAATAAGATTCGCTGTTGTAG
Found at i:22209434 original size:50 final size:50
Alignment explanation
Indices: 22208563--22209427 Score: 548
Period size: 50 Copynumber: 17.3 Consensus size: 50
22208553 TAACTCGTAA
* * * * *
22208563 CTTTAATCCT-TTTAACTGTAATGTTGGGGAAGCAAGATTCTCCGTTGTGG
1 CTTTAAT-CTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* ** * * *
22208613 CTTTAATCTGTTCCACTGCACCGCCTGGGGAA-TAAGATTCGCTGTTGTAG
1 CTTTAATCTGTTCAACTGCAATGTC-GGGGAAGTAAGATTCGCCGTTGTGG
* * * *
22208663 CTTTAATCTTTTTAACTGCAATGTCGGGGCAGTAAGATTTGCCGTTGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* * * * * *
22208713 CTTTAATCTATTCCACTGCACTGCCAGGGAAGTAAGATTCGTCGTTGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* * * * * *
22208763 CTTTAATCTTTTTAACTGTAATGTCGGGGAAGCAGGATTCACCGTTGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* * * * *
22208813 CTTTAATCTATTCCACTGC-ATCGCCTAGGG-AGTAAGATTC-CCTGTTGTAG
1 CTTTAATCTGTTCAACTGCAAT-GTC-GGGGAAGTAAGATTCGCC-GTTGTGG
* * * * * * *
22208863 TTTTAATCTTTTTAACTGCAATGTCGGGGCAGCAAGATTTGCCGTTATGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* ** * * * * *
22208913 CTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACCATTTTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* * *
22208963 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* * * *
22209013 CTTTAATCTGTTCTACTGC-ATCGCCTAGGG-AGTAAGATTCGTCGTTGTGG
1 CTTTAATCTGTTCAACTGCAAT-GTC-GGGGAAGTAAGATTCGCCGTTGTGG
* * * * ** * *
22209063 CTTTAATCAT-TTTAACTGCAATATCAGGGAGGCGAGATTCACCGATGTGG
1 CTTTAATC-TGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
** ** * * * * * * *
22209113 CTTTAATCTGTTCCTCTGCACCGCCAGTGAAGTAGGATTTGTCGCTGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* * * * ** * * *
22209163 CTTTAATCTTTTTTTAACTGCAATGTCAGGAAAGCGAGATTCACCGATGTTG
1 CTTTAATC--TGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
* * * * * * * * *
22209215 CTTTAATCTATTCCACTGCACT-ACAAGGGAGGTAAGATTCGCTGCTGTAG
1 CTTTAATCTGTTCAACTGCAATGTC-GGGGAAGTAAGATTCGCCGTTGTGG
* * * *
22209265 CTTTAATCT-TTCTAACTGTAATGTTGGGGAAGCAAGATTCACCGTTGTGG
1 CTTTAATCTGTTC-AACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
** * * * * *
22209315 CTTTAATCTGTTCCGCTGC-ATCGCCTGAGG-AGTAAGATTCGCTGCTGTAG
1 CTTTAATCTGTTCAACTGCAAT-GTC-GGGGAAGTAAGATTCGCCGTTGTGG
* * * * *
22209365 CTTTAATCTTTTGAACTACAATGTCGGGGAAGCAAGATTCACCGTTGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
*
22209415 TTTTAATCTGTTC
1 CTTTAATCTGTTC
22209428 CACTACATCG
Statistics
Matches: 604, Mismatches: 186, Indels: 50
0.72 0.22 0.06
Matches are distributed among these distances:
49 30 0.05
50 514 0.85
51 27 0.04
52 33 0.05
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (50 bp):
CTTTAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTTGTGG
Found at i:22209549 original size:44 final size:44
Alignment explanation
Indices: 22209471--22210024 Score: 249
Period size: 44 Copynumber: 12.0 Consensus size: 44
22209461 TTTGGTCTAT
* * * *
22209471 TCCACCGTAATCTCAGGGAAATAGGATTAT-TGGCTTCAATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATT-TCTGGCTTCAATCTGC
*
22209515 TCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATAC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG---C
* * * *
22209562 GATTTACTCTACTATAA-CTTCAGAGAGATAAGA--TC---CTTTAATCCGC
1 ----T-C-C-ACTGTAATC-TCAGGGAGATAAGATTTCTGGCTTCAATCTGC
* * * * *
22209608 TCTACTGTAATCTCAAGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
* *
22209652 TCCGCTGTAATCTCAGGGAGATAAGATTTTTGGCTTCAATCTGATGTGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC-----TG--C
* * * **
22209703 TACTCTACTGTAA-CTTCAGAGAGATAAGACCCTTTAT---TTTAATCCAC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGA---TTTCTGGCTTCAATCTGC
* * *
22209750 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
* * *
22209794 GCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTCAATCTGATTCGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC----T-G--C
* * * *
22209845 TACTCTACTGTAA-CTTCAGAGAGATAAGACCCTTTAT---TTTAATCCGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGA---TTTCTGGCTTCAATCTGC
* * *
22209892 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
* * * *
22209936 GCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTCAATTTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
** * *
22209980 TCCACTGTAA-CATCAGGGAGATAAGACCTGTGGCTTAAATCTGC
1 TCCACTGTAATC-TCAGGGAGATAAGATTTCTGGCTTCAATCTGC
22210024 T
1 T
22210025 TCCTTACACT
Statistics
Matches: 383, Mismatches: 72, Indels: 110
0.68 0.13 0.19
Matches are distributed among these distances:
39 17 0.04
40 1 0.00
41 8 0.02
42 1 0.00
43 2 0.01
44 239 0.62
45 4 0.01
46 3 0.01
47 5 0.01
48 1 0.00
49 12 0.03
51 4 0.01
52 5 0.01
53 6 0.02
54 67 0.17
57 8 0.02
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGC
Found at i:22209817 original size:142 final size:141
Alignment explanation
Indices: 22209471--22209975 Score: 795
Period size: 142 Copynumber: 3.6 Consensus size: 141
22209461 TTTGGTCTAT
* * * * * *
22209471 TCCACCGTAATCTCAGGGAAATAGGATTATTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCGCCGCTGTAATCTCAGGGAGA
* * * *
22209536 TAAGATTTCTGGCTTCAATCTGATACGATTTACTCTACTATAACTTCAGAGAGATAAGATCC---
66 TAAGATTTCTGGCTTCAATCTGAT-TGATCTACTCTACTGTAACTTCAGAGAGATAAGACCCTTT
22209598 --TTTAATCCGC
130 ATTTTAATCCGC
* * *
22209608 TCTACTGTAATCTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCGCCGCTGTAATCTCAGGGAGA
*
22209673 TAAGATTTTTGGCTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGACCCTTT
66 TAAGATTTCTGGCTTCAATCTGAT-TGATCTACTCTACTGTAACTTCAGAGAGATAAGACCCTTT
*
22209738 ATTTTAATCCAC
130 ATTTTAATCCGC
*
22209750 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCGCCGCTGTAATCTTAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCGCCGCTGTAATCTCAGGGAGA
22209815 TAAGATTTCTGGCTTCAATCTGATTCGATCTACTCTACTGTAACTTCAGAGAGATAAGACCCTTT
66 TAAGATTTCTGGCTTCAATCTGATT-GATCTACTCTACTGTAACTTCAGAGAGATAAGACCCTTT
22209880 ATTTTAATCCGC
130 ATTTTAATCCGC
*
22209892 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCGCCGCTGTAATCTTAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCGCCGCTGTAATCTCAGGGAGA
22209957 TAAGATTTCTGGCTTCAAT
66 TAAGATTTCTGGCTTCAAT
22209976 TTGCTCCACT
Statistics
Matches: 342, Mismatches: 20, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
137 114 0.33
141 1 0.00
142 227 0.66
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (141 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCGCCGCTGTAATCTCAGGGAGA
TAAGATTTCTGGCTTCAATCTGATTGATCTACTCTACTGTAACTTCAGAGAGATAAGACCCTTTA
TTTTAATCCGC
Found at i:22212211 original size:12 final size:13
Alignment explanation
Indices: 22212194--22212222 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22212184 TTGGCCTCTC
22212194 CTTTTTC-TTTTT
1 CTTTTTCTTTTTT
22212206 CTTTTTCTTTTTT
1 CTTTTTCTTTTTT
22212219 CTTT
1 CTTT
22212223 GTTTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
CTTTTTCTTTTTT
Found at i:22212288 original size:46 final size:47
Alignment explanation
Indices: 22212201--22212291 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 47
22212191 CTCCTTTTTC
*
22212201 TTTTTCTTTTTCTTTTTTCTTTGTTTTTATTTTGACCTTGATTTTAA
1 TTTTTCTTTTTCTTTTTTCTGTGTTTTTATTTTGACCTTGATTTTAA
**
22212248 TTTTTCTTTTTCTTCTTTT-TGT-TTTTTATTTTGATTTTGATTTT
1 TTTTTCTTTTTCTT-TTTTCTGTGTTTTTATTTTGACCTTGATTTT
22212292 TTTTGAATCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
46 20 0.50
47 16 0.40
48 4 0.10
ACGTcount: A:0.09, C:0.09, G:0.07, T:0.76
Consensus pattern (47 bp):
TTTTTCTTTTTCTTTTTTCTGTGTTTTTATTTTGACCTTGATTTTAA
Found at i:22217391 original size:15 final size:17
Alignment explanation
Indices: 22217361--22217393 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22217351 TGTTAGCACT
22217361 TAAAATATATTATATAG
1 TAAAATATATTATATAG
22217378 TAAAATA-ATATATATA
1 TAAAATATAT-TATATA
22217394 CAAAAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAAATATATTATATAG
Found at i:22217435 original size:3 final size:3
Alignment explanation
Indices: 22217427--22217484 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
22217417 AACTAATACA
* * * * * * *
22217427 AAT AAT AAT ACT AAT AAT TAT AGT AAC ATT AAT AAT AAT AAC AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22217475 AAT AAT AAT A
1 AAT AAT AAT A
22217485 GTTAAGTAAT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22217439 original size:18 final size:18
Alignment explanation
Indices: 22217408--22217442 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22217398 AAATGTAAAT
22217408 AAATATATAAACTAATAC
1 AAATATATAAACTAATAC
22217426 AAATA-ATAATACTAATA
1 AAATATATAA-ACTAATA
22217443 ATTATAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATATATAAACTAATAC
Found at i:22217459 original size:18 final size:18
Alignment explanation
Indices: 22217438--22217486 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
22217428 ATAATAATAC
* *
22217438 TAATAATTATAGTAACAT
1 TAATAATAATAGTAACAA
**
22217456 TAATAATAATAACAACAA
1 TAATAATAATAGTAACAA
22217474 TAATAATAATAGT
1 TAATAATAATAGT
22217487 TAAGTAATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (18 bp):
TAATAATAATAGTAACAA
Found at i:22217468 original size:15 final size:15
Alignment explanation
Indices: 22217427--22217482 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
22217417 AACTAATACA
22217427 AATAATAAT-ACTAAT
1 AATAATAATAAC-AAT
* * *
22217442 AATTATAGTAACATT
1 AATAATAATAACAAT
*
22217457 AATAATAATAACAAC
1 AATAATAATAACAAT
22217472 AATAATAATAA
1 AATAATAATAA
22217483 TAGTTAAGTA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
15 31 0.94
16 2 0.06
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (15 bp):
AATAATAATAACAAT
Found at i:22223344 original size:18 final size:18
Alignment explanation
Indices: 22223305--22223347 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
22223295 ACGAGAGTTT
*
22223305 AAAAAATATATTAAAACT
1 AAAAAATATATTAAAACA
*
22223323 AAAAAATA-AGTTTAAACA
1 AAAAAATATA-TTAAAACA
22223341 AAAAAAT
1 AAAAAAT
22223348 TTAAGTTCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAAATATATTAAAACA
Found at i:22226614 original size:15 final size:16
Alignment explanation
Indices: 22226593--22226638 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
22226583 ATTGACAACA
22226593 TCAAAACAGAACACAT
1 TCAAAACAGAACACAT
22226609 TC-AAACA-AGACACA-
1 TCAAAACAGA-ACACAT
22226623 TCAAAACAGAACACAT
1 TCAAAACAGAACACAT
22226639 GCCTACCAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
14 3 0.12
15 20 0.77
16 3 0.12
ACGTcount: A:0.57, C:0.26, G:0.07, T:0.11
Consensus pattern (16 bp):
TCAAAACAGAACACAT
Found at i:22230107 original size:46 final size:46
Alignment explanation
Indices: 22230056--22230203 Score: 133
Period size: 46 Copynumber: 3.2 Consensus size: 46
22230046 ATTATTCTGA
* *
22230056 AAATAATAATACGTGATAAATTCAAAAT-AATATAATATGATAAATTT
1 AAATAATAATA-ATGATAAATTCAAAATAAATAT-ACATGATAAATTT
* * *
22230103 -AATAATATTAATGATAAATTTAAGATAAATATACATGATAAATTT
1 AAATAATAATAATGATAAATTCAAAATAAATATACATGATAAATTT
** * * * *
22230148 AAATAATGTTAATGATGAATTTAAAAT-AATAATA-TTGATAAATTAC
1 AAATAATAATAATGATAAATTCAAAATAAAT-ATACATGATAAATT-T
22230194 AAATAATAAT
1 AAATAATAAT
22230204 GCATTATAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
45 37 0.44
46 48 0.56
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.36
Consensus pattern (46 bp):
AAATAATAATAATGATAAATTCAAAATAAATATACATGATAAATTT
Found at i:22230118 original size:45 final size:45
Alignment explanation
Indices: 22230069--22230268 Score: 165
Period size: 45 Copynumber: 4.4 Consensus size: 45
22230059 TAATAATACG
*
22230069 TGATAAATTCAAAATAATATAATATGATAAATTT-AATAATATTAA
1 TGATAAATTTAAAATAA-ATAATATGATAAATTTAAATAATATTAA
* * *
22230114 TGATAAATTTAAGATAAATATACATGATAAATTTAAATAATGTTAA
1 TGATAAATTTAAAATAAATA-ATATGATAAATTTAAATAATATTAA
* * **
22230160 TGATGAATTTAAAAT-AATAATATTGATAAATTACAAATAATAATGCA
1 TGATAAATTTAAAATAAATAATA-TGATAAATT-TAAATAAT-ATTAA
* * * * *
22230207 TTATAAATCTAAGAT-AATAATATACAATAAA-TTAAACAATATTAA
1 TGATAAATTTAAAATAAATAATAT--GATAAATTTAAATAATATTAA
* **
22230252 TAATAAAACTAAAATAA
1 TGATAAATTTAAAATAA
22230269 TATTAAGTTT
Statistics
Matches: 124, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
44 5 0.04
45 55 0.44
46 38 0.31
47 21 0.17
48 5 0.04
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (45 bp):
TGATAAATTTAAAATAAATAATATGATAAATTTAAATAATATTAA
Found at i:22231555 original size:7 final size:8
Alignment explanation
Indices: 22231536--22231566 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
22231526 TATGAGTTTA
22231536 AAAAAATC
1 AAAAAATC
22231544 AAAAAATC
1 AAAAAATC
22231552 AAAAAAATC
1 -AAAAAATC
22231561 AAAAAA
1 AAAAAA
22231567 ATGAAAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATC
Found at i:22231573 original size:8 final size:9
Alignment explanation
Indices: 22231535--22231573 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
22231525 CTATGAGTTT
22231535 AAAAAAATC
1 AAAAAAATC
22231544 -AAAAAATC
1 AAAAAAATC
22231552 AAAAAAATC
1 AAAAAAATC
*
22231561 AAAAAAATG
1 AAAAAAATC
22231570 AAAA
1 AAAA
22231574 TGAAAATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
8 8 0.29
9 20 0.71
ACGTcount: A:0.79, C:0.08, G:0.03, T:0.10
Consensus pattern (9 bp):
AAAAAAATC
Found at i:22231606 original size:5 final size:5
Alignment explanation
Indices: 22231593--22231639 Score: 58
Period size: 5 Copynumber: 8.8 Consensus size: 5
22231583 AAATGATGGA
*
22231593 AAAAT AAAAG AAAAGG AAAAAG AAAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAA-G -AAAAG -AAAAG AAAAG AAAAG AAAAG AAAA
22231640 AGGAGAGGGC
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
5 27 0.69
6 8 0.21
7 4 0.10
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:22231617 original size:23 final size:21
Alignment explanation
Indices: 22231591--22231641 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 21
22231581 AAAAATGATG
*
22231591 GAAAAATAAAAGAAAAGGAAAAA
1 GAAAAAGAAAAGAAAA-G-AAAA
22231614 GAAAAAGAAAAGAAAAGAAAA
1 GAAAAAGAAAAGAAAAGAAAA
22231635 GAAAAAG
1 GAAAAAG
22231642 GAGAGGGCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 11 0.41
22 1 0.04
23 15 0.56
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (21 bp):
GAAAAAGAAAAGAAAAGAAAA
Found at i:22231640 original size:6 final size:6
Alignment explanation
Indices: 22231598--22231641 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
22231588 ATGGAAAAAT
*
22231598 AAAAGA AAAGGA AAAAGA AAAAG- AAAAG- AAAAG- AAAAGA AAAAG
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAG
22231642 GAGAGGGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 15 0.43
6 20 0.57
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:22231641 original size:11 final size:11
Alignment explanation
Indices: 22231591--22231641 Score: 68
Period size: 11 Copynumber: 4.6 Consensus size: 11
22231581 AAAAATGATG
*
22231591 GAAAAATAAAA
1 GAAAAAGAAAA
*
22231602 GAAAAGGAAAAA
1 GAAAAAG-AAAA
22231614 GAAAAAGAAAA
1 GAAAAAGAAAA
22231625 G-AAAAGAAAA
1 GAAAAAGAAAA
22231635 GAAAAAG
1 GAAAAAG
22231642 GAGAGGGCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 10 0.29
11 15 0.43
12 10 0.29
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:22233941 original size:44 final size:43
Alignment explanation
Indices: 22233873--22234198 Score: 183
Period size: 44 Copynumber: 7.4 Consensus size: 43
22233863 CAGATTGGTG
*
22233873 AAACCACAAATCCTATCTCCCTAAAGTTACAGTGGAGCGGATTA
1 AAACCAC-AATCTTATCTCCCTAAAGTTACAGTGGAGCGGATTA
* * * * *
22233917 AAACCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGA-TC
1 AAACCACA-ATCTTATCTCCCTAAAGTTACAGTGGAGCGGATTA
** * * * * * ** *
22233960 GCATC-CAGTCTTATCTCCCTGAATTTGCAGTGGAGTAGACTGA
1 AAACCACAATCTTATCTCCCTAAAGTTACAGTGGAGCGGA-TTA
* *
22234003 ATAAAC-CAATCTTATCTCCCTAAAGTTACAGTGGAGTGGATTGA
1 A-AACCACAATCTTATCTCCCTAAAGTTACAGTGGAGCGGATT-A
* *
22234047 AGATAGCA-AATCCTATCTCCCTAAAGTTACAGTGGAGCGGATTGA
1 A-A-ACCACAATCTTATCTCCCTAAAGTTACAGTGGAGCGGATT-A
* *** * * * ** *
22234092 AGATGGCGAATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTG
1 AAACCAC-AATCTTATCTCCCTAAAGTTACAGTGGAGCGGATTA
* * * ** * *
22234136 AAGCCAATAATCTTATCTCCCTGAAGTTGTAGTGGCGCAGATTA
1 AAACC-ACAATCTTATCTCCCTAAAGTTACAGTGGAGCGGATTA
*
22234180 AAACTACAGATCTTATCTC
1 AAACCACA-ATCTTATCTC
22234199 ACTGAAGATG
Statistics
Matches: 216, Mismatches: 55, Indels: 22
0.74 0.19 0.08
Matches are distributed among these distances:
41 26 0.12
42 2 0.01
43 8 0.04
44 113 0.52
45 67 0.31
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (43 bp):
AAACCACAATCTTATCTCCCTAAAGTTACAGTGGAGCGGATTA
Found at i:22234065 original size:45 final size:45
Alignment explanation
Indices: 22233968--22234163 Score: 191
Period size: 45 Copynumber: 4.4 Consensus size: 45
22233958 TCGCATCCAG
* * * * * * * *
22233968 TCTTATCTCCCTGAATTTGCAGTGGAGTAGACTGAATA-AACCAA
1 TCTTATCTCCCTAAAGTTACAGTGGAGTGGATTGAAGATAGCAAA
22234012 TCTTATCTCCCTAAAGTTACAGTGGAGTGGATTGAAGATAGCAAA
1 TCTTATCTCCCTAAAGTTACAGTGGAGTGGATTGAAGATAGCAAA
* * * *
22234057 TCCTATCTCCCTAAAGTTACAGTGGAGCGGATTGAAGATGGCGAA
1 TCTTATCTCCCTAAAGTTACAGTGGAGTGGATTGAAGATAGCAAA
* * * * **
22234102 TCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGCCA--ATAA
1 TCTTATCTCCCTAAAGTTACAGTGGAGTGGATTGAAGATAGCA-AA
*
22234146 TCTTATCTCCCTGAAGTT
1 TCTTATCTCCCTAAAGTT
22234164 GTAGTGGCGC
Statistics
Matches: 128, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
44 52 0.41
45 76 0.59
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (45 bp):
TCTTATCTCCCTAAAGTTACAGTGGAGTGGATTGAAGATAGCAAA
Found at i:22234333 original size:44 final size:44
Alignment explanation
Indices: 22234273--22234821 Score: 305
Period size: 44 Copynumber: 12.5 Consensus size: 44
22234263 AAAGATGGCG
* * * * *
22234273 AATCTTATCTCCCTGAAGTTACAGCGGAGCAGTTTGAAGCCAAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* * **
22234317 AATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAG-TGAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* * * * *****
22234360 GGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGACTAAAGATGGCG
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAG-CCAAT
* * *
22234406 AATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* * **
22234450 AATCCTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAAG-TGAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* * *
22234493 GGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T--CG-C-AT
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* * ** ** *
22234533 CAGGTCTTATCT-TCCTGAAGTTACAGTGGAGCAGACCAAA-TAAACC
1 -A-ATCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-T
* * * * *
22234579 AATCTGATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCAAA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* ** **
22234623 AATCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAGTTACA-
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-AT
* * * * ** * * **
22234667 AGTCTTATTTCTCTAAAGTTGCAGCGGAATAGACTGAA-TAAACT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-T
* * * *
22234711 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAACC
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-T
* * * * ***
22234755 AATCCTATCTCCCTGAAGTTGCAGTGGAACGGATTAAA-ATGAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
*
22234798 GGATCTTATCTCTCTGAAGTTGCA
1 -AATCTTATCTCTCTGAAGTTGCA
22234822 ATAGAGTAGA
Statistics
Matches: 388, Mismatches: 97, Indels: 40
0.74 0.18 0.08
Matches are distributed among these distances:
40 3 0.01
41 28 0.07
42 1 0.00
43 7 0.02
44 311 0.80
45 37 0.10
46 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
Found at i:22234367 original size:173 final size:174
Alignment explanation
Indices: 22234060--22234389 Score: 457
Period size: 173 Copynumber: 1.9 Consensus size: 174
22234050 TAGCAAATCC
* * * * *
22234060 TATCTCCCTAAAGTTACAGTGGAGCGGATTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGC
1 TATCCCCCTAAAGTTACAGTGGAGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTACAGC
* * * *
22234125 GGAGTAGATTGAAGCCAATAATCTTATCTCCCTGAAGTTGTAGTGGCGCAGATTAAAACTACAGA
66 GGAGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACAGA
22234190 TCTTATCTCACTGAAGATGCAG-AGAGTAGATCGCATCCAGTCT
131 TCTTATCTCACTGAAGATGCAGTAGAGTAGATCGCATCCAGTCT
* *
22234233 TATCCCCCTAAAGTTGCAGTGGGGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTACAGC
1 TATCCCCCTAAAGTTACAGTGGAGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTACAGC
* * * * **
22234298 GGAGCAGTTTGAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATT-AAAGTGATGG
66 GGAGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACT-ACAG
* * *
22234362 ATCTTATTTCTCTGAAGTTGCAGTAGAG
130 ATCTTATCTCACTGAAGATGCAGTAGAG
22234390 CAGACTAAAG
Statistics
Matches: 135, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
172 4 0.03
173 127 0.94
174 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (174 bp):
TATCCCCCTAAAGTTACAGTGGAGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTACAGC
GGAGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACTACAGA
TCTTATCTCACTGAAGATGCAGTAGAGTAGATCGCATCCAGTCT
Found at i:22234409 original size:133 final size:133
Alignment explanation
Indices: 22234243--22234526 Score: 505
Period size: 133 Copynumber: 2.1 Consensus size: 133
22234233 TATCCCCCTA
* * *
22234243 AAGTTGCAGTGGGGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTACAGCGGAGCAGTTT
1 AAGTTGCAGTAGAGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTACAGCGGAGCAGATT
* * *
22234308 GAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAGTGATGGATCTTATTTCT
66 GAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAAGTGATGGATCTTATCTCT
22234373 CTG
131 CTG
*
22234376 AAGTTGCAGTAGAGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATT
1 AAGTTGCAGTAGAGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTACAGCGGAGCAGATT
22234441 GAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAAGTGATGGATCTTATCTCT
66 GAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAAGTGATGGATCTTATCTCT
22234506 CTG
131 CTG
22234509 AAGTTGCAGTAGAGCAGA
1 AAGTTGCAGTAGAGCAGA
22234527 TCGCATCAGG
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 144 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (133 bp):
AAGTTGCAGTAGAGCAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTACAGCGGAGCAGATT
GAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAAGTGATGGATCTTATCTCT
CTG
Found at i:22234591 original size:306 final size:307
Alignment explanation
Indices: 22234091--22234873 Score: 1040
Period size: 306 Copynumber: 2.6 Consensus size: 307
22234081 GAGCGGATTG
* *
22234091 AAGATGGCGAATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGCCAATAATCTTATCTCC
1 AAGATGGCGAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCC
* * ** * *
22234156 CTGAAGTTGTAGTGGCGCAGATTAAAACT-ACAGATCTTATCTCACTGAAGATGCAG-AGAGTAG
66 CTGAAGTTGCAGTGGAGCAGATTAAAA-TGATGGATCTTATCTCTCTGAAGTTGCAGTAGAGTAG
* * * * ** * *
22234219 ATCGCATCCA-GTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTAAAGATGGCGAATCTTATCT
130 ATCGCAT-CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCAAAGATAACCAATCTGATCT
* * * *
22234283 CCCTGAAGTTACAGCGGAGCAGTTTGAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGGAGCG
194 CCCTGAAGTTACAGCGGAGCAGATTAAAACCAAAAATCCTATCTCTCTGAAGTTGCAGTGGAGCG
** * * *
22234348 GATTAAAGTGA-TGGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGACTA
259 GATTAAAGTGACAAG-TCTTATTTCTCTAAAGTTGCAGCAGAACAGACTA
*
22234397 AAGATGGCGAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCT
1 AAGATGGCGAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCC
* * *
22234462 CTGAAGTTGCAGTGGAGCAGACTAAAGTGATGGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
66 CTGAAGTTGCAGTGGAGCAGATTAAAATGATGGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
* * *
22234527 TCGCATCAGGTCTTATCTTCCTGAAGTTACAGTGGAGCAGACCAAATA-AACCAATCTGATCTCC
131 TCGCATCAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCAAAGATAACCAATCTGATCTCC
* *
22234591 CTGAAGTTACAGTGGAGCAGATTAAAACCAAAAATCCTATCTCTCTGAAGTTGCAGTGGAGTGGA
196 CTGAAGTTACAGCGGAGCAGATTAAAACCAAAAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGA
* * * *
22234656 TTAAAGTTACAAGTCTTATTTCTCTAAAGTTGCAGCGGAATAGACTG
261 TTAAAGTGACAAGTCTTATTTCTCTAAAGTTGCAGCAGAACAGACTA
* ** * * * *
22234703 AATA-AACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAACCAATCCTATCTC
1 AAGATGGCGAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAA-TAATCCTATCTC
* * *
22234766 CCTGAAGTTGCAGTGGAACGGATTAAAATGATGGATCTTATCTCTCTGAAGTTGCAATAGAGTAG
65 CCTGAAGTTGCAGTGGAGCAGATTAAAATGATGGATCTTATCTCTCTGAAGTTGCAGTAGAGTAG
*
22234831 ATCGCGTCAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
130 ATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
22234874 TGAAGATAGC
Statistics
Matches: 417, Mismatches: 55, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
304 2 0.00
305 149 0.36
306 220 0.53
307 46 0.11
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (307 bp):
AAGATGGCGAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCC
CTGAAGTTGCAGTGGAGCAGATTAAAATGATGGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
TCGCATCAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCAAAGATAACCAATCTGATCTCC
CTGAAGTTACAGCGGAGCAGATTAAAACCAAAAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGA
TTAAAGTGACAAGTCTTATTTCTCTAAAGTTGCAGCAGAACAGACTA
Found at i:22236343 original size:23 final size:24
Alignment explanation
Indices: 22236282--22236332 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
22236272 TTTATTTAAT
*
22236282 TTTAAA-TCTAATATTATTTTGGTG
1 TTTAAACT-TAATATTATTTTAGTG
22236306 TTTAAACTTAATATTATTTTAGT-
1 TTTAAACTTAATATTATTTTAGTG
22236329 TTTA
1 TTTA
22236333 TTATTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 4 0.16
24 20 0.80
25 1 0.04
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (24 bp):
TTTAAACTTAATATTATTTTAGTG
Found at i:22236448 original size:45 final size:45
Alignment explanation
Indices: 22236387--22236518 Score: 160
Period size: 45 Copynumber: 2.9 Consensus size: 45
22236377 AGCATGCATT
* *
22236387 ATTATTTGTAATTTATCAATATTATTATTTTAAATTCATCATTAAC
1 ATTATTT-AAATTTATCAATATTATTATTTTAAATTTATCATTAAC
* * *
22236433 ATTATTTAAATTTATC-ATGTATATTTATCTTAAATTTATCATTAAT
1 ATTATTTAAATTTATCAATAT-TA-TTATTTTAAATTTATCATTAAC
*
22236479 ATT-TTTAAATTTATCATATATTATTATTTTGAATTTATCA
1 ATTATTTAAATTTATCA-ATATTATTATTTTAAATTTATCA
22236519 CGTATTATTA
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
44 3 0.04
45 37 0.50
46 31 0.42
47 3 0.04
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (45 bp):
ATTATTTAAATTTATCAATATTATTATTTTAAATTTATCATTAAC
Found at i:22236460 original size:13 final size:12
Alignment explanation
Indices: 22236416--22236482 Score: 61
Period size: 13 Copynumber: 5.7 Consensus size: 12
22236406 TATTATTATT
*
22236416 TTAAATTCATCA
1 TTAAATTTATCA
22236428 TTAACA-TTAT--
1 TTAA-ATTTATCA
22236438 TTAAATTTATCA
1 TTAAATTTATCA
*
22236450 TGTATATTTATC-
1 T-TAAATTTATCA
22236462 TTAAATTTATCA
1 TTAAATTTATCA
22236474 TTAATATTT
1 TTAA-ATTT
22236483 TTAAATTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
9 1 0.02
10 8 0.18
11 9 0.20
12 13 0.29
13 14 0.31
ACGTcount: A:0.37, C:0.09, G:0.01, T:0.52
Consensus pattern (12 bp):
TTAAATTTATCA
Found at i:22236556 original size:70 final size:69
Alignment explanation
Indices: 22236413--22236586 Score: 194
Period size: 70 Copynumber: 2.5 Consensus size: 69
22236403 CAATATTATT
* ** * *
22236413 ATTTTAAATTCATCAT-TAACATTA-TTTAAATTTATCATGTATATTTATCTTAAATTTATCATT
1 ATTTTAAATTTATCATATATTATTATTTTAAATTTATCACGTATATTTATCTTAAATTTATCATC
*
22236476 AATA
66 AAAA
* * *
22236480 TTTTTAAATTTATCATATATTATTATTTTGAATTTATCACGTAT-TATTATTTTTAGAA-TTATC
1 ATTTTAAATTTATCATATATTATTATTTTAAATTTATCACGTATAT-TTA-TCTTA-AATTTATC
22236543 ATCAAAA
63 ATCAAAA
* *
22236550 ATTTTAAATTTATTATATATTATTATTTCAAATTTAT
1 ATTTTAAATTTATCATATATTATTATTTTAAATTTAT
22236587 TATATATTGT
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
67 14 0.16
68 7 0.08
69 19 0.21
70 47 0.53
71 2 0.02
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.53
Consensus pattern (69 bp):
ATTTTAAATTTATCATATATTATTATTTTAAATTTATCACGTATATTTATCTTAAATTTATCATC
AAAA
Found at i:22236587 original size:24 final size:24
Alignment explanation
Indices: 22236360--22236608 Score: 173
Period size: 24 Copynumber: 10.7 Consensus size: 24
22236350 TTTATTGTAC
* * * **
22236360 ATTATTATCTTAGATTTAGCATGC
1 ATTATTATTTTAAATTTATCATAT
22236384 ATTATTATTTGT-AATTTATCA-AT
1 ATTATTATTT-TAAATTTATCATAT
*
22236407 ATTATTATTTTAAATTCATCAT-T
1 ATTATTATTTTAAATTTATCATAT
** *
22236430 AACATTA-TTTAAATTTATCATGT
1 ATTATTATTTTAAATTTATCATAT
*
22236453 A-TATTTATCTTAAATTTATCAT-T
1 ATTA-TTATTTTAAATTTATCATAT
*
22236476 AATA-T-TTTTAAATTTATCATAT
1 ATTATTATTTTAAATTTATCATAT
* **
22236498 ATTATTATTTTGAATTTATCACGT
1 ATTATTATTTTAAATTTATCATAT
22236522 ATTATTATTTTTAGAA-TTATCATCA-
1 ATTATTA-TTTTA-AATTTATCAT-AT
* *
22236547 A--A-AATTTTAAATTTATTATAT
1 ATTATTATTTTAAATTTATCATAT
* *
22236568 ATTATTATTTCAAATTTATTATAT
1 ATTATTATTTTAAATTTATCATAT
* *
22236592 ATTGTTTATTGTAAATT
1 ATT-ATTATTTTAAATT
22236609 ACCCTATTCA
Statistics
Matches: 180, Mismatches: 26, Indels: 37
0.74 0.11 0.15
Matches are distributed among these distances:
20 3 0.02
21 26 0.14
22 21 0.12
23 34 0.19
24 72 0.40
25 22 0.12
26 2 0.01
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (24 bp):
ATTATTATTTTAAATTTATCATAT
Found at i:22236750 original size:44 final size:43
Alignment explanation
Indices: 22236674--22237317 Score: 284
Period size: 44 Copynumber: 14.9 Consensus size: 43
22236664 TTGTTTTAAT
* *
22236674 TCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGCCAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAA-AA
* * * * * *
22236718 TCTTATCTCCCTGAAGTTGTAGTGGCGCAGATTAAAACTACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-AAA
* * * * * * * *
22236762 TCTTATCTCACTGAAGATGCAG-AGAGTAGATCGCATCC--AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAAA
* * * * * * *
22236802 TCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTAAAGATGGC-GAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T--TGAAGCCAAAA
*
22236847 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAA-AA
* * * * ** **
22236891 TCCTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAAGTGATGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-AAA
* * * * * **
22236935 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCA-TC-AGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAAA
* * ** ***
22236976 TCTTATCTTCCTGAAGTTACAGTGGAGCAGA-CCAAATAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAA--AA
* * * *
22237020 TCTGATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCAAAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC-AAAA
* * ** * ** *
22237064 TCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-AAA
* * * * ** * **
22237108 TCTTATTTCTCTAAAGTTGCAGCGGAATAGACTGAA-TAAACTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAA--AA
*
22237152 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAA--AA
* * * * *** **
22237196 TCCTATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATGATGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-AAA
* * * * * * * **
22237240 TCTTATCTCTCTGAAGTTGCAATAGAGTAGATCG-CGTC-AGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAAA
*
22237281 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
22237318 ATAGCAAATG
Statistics
Matches: 446, Mismatches: 132, Indels: 46
0.71 0.21 0.07
Matches are distributed among these distances:
40 20 0.04
41 63 0.14
42 8 0.02
43 13 0.03
44 307 0.69
45 33 0.07
46 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAAA
Found at i:22237127 original size:173 final size:173
Alignment explanation
Indices: 22236678--22237129 Score: 550
Period size: 173 Copynumber: 2.6 Consensus size: 173
22236668 TTTAATTCTT
* * * *
22236678 ATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGCCAATAATCTTATCTCCCTGAAGTTGTAGTGG
1 ATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGG
* ** * * *
22236743 CGCAGATTAAAACTACAGATCTTATCTCACTGAAGATGCAGAGAGTAGATCGCATCCAGTCTTAT
66 AGCAGATTAAAGTTACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCCAGTCTTAT
* * * ** * *
22236808 CCCCCTAAAGTTGCAGTGGGGCAGACTAAAGATGGCGAATCTT
131 CCCCCTAAAGTTACAGTGGAGCAGACCAAAGATAACCAATCTG
22236851 ATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGG
1 ATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGG
* * **
22236916 AGCAGACTAAAGTGATGGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCAT-CAGGTCTT
66 AGCAGATTAAAGTTACAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCCA-GTCTT
** * *
22236980 ATCTTCCTGAAGTTACAGTGGAGCAGACCAAATA-AACCAATCTG
129 ATCCCCCTAAAGTTACAGTGGAGCAGACCAAAGATAACCAATCTG
* * * * *
22237024 ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCAAAAATCCTATCTCTCTGAAGTTGCAGTGG
1 ATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGG
** * *
22237089 AGTGGATTAAAGTTACA-AGTCTTATTTCTCTAAAGTTGCAG
66 AGCAGATTAAAGTTACAGA-TCTTATCTCTCTGAAGTTGCAG
22237130 CGGAATAGAC
Statistics
Matches: 238, Mismatches: 38, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
172 1 0.00
173 192 0.81
174 45 0.19
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (173 bp):
ATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCTCTGAAGTTGCAGTGG
AGCAGATTAAAGTTACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCCAGTCTTAT
CCCCCTAAAGTTACAGTGGAGCAGACCAAAGATAACCAATCTG
Found at i:22237244 original size:132 final size:130
Alignment explanation
Indices: 22237010--22237260 Score: 326
Period size: 132 Copynumber: 1.9 Consensus size: 130
22237000 GAGCAGACCA
*
22237010 AATAAACCAATCTGATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCAAAAATCCTATCTCTC
1 AATAAACCAATCTGATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACC--AAATCCTATCTCCC
** * * *
22237075 TGAAGTTGCAGTGGAGTGGATTAAAGTTACAAGTCTTATTTCTCTAAAGTTGCAGCGGAATAGAC
64 TGAAGTTGCAGTGGAACGGATTAAAATGACAAGTCTTATCTCTCTAAAGTTGCAGCGGAATAGAC
22237140 TG
129 TG
* * *
22237142 AATAAACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAACC-AATCCTATCTCC
1 AATAAACCAATCTGATCTCCCTGAAGTTACAGTGGAGCAGATT--A-AAACCAAATCCTATCTCC
** *
22237206 CTGAAGTTGCAGTGGAACGGATTAAAATGA-TGGATCTTATCTCTCTGAAGTTGCA
63 CTGAAGTTGCAGTGGAACGGATTAAAATGACAAG-TCTTATCTCTCTAAAGTTGCA
22237261 ATAGAGTAGA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
131 1 0.01
132 96 0.93
134 1 0.01
135 5 0.05
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (130 bp):
AATAAACCAATCTGATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCAAATCCTATCTCCCTG
AAGTTGCAGTGGAACGGATTAAAATGACAAGTCTTATCTCTCTAAAGTTGCAGCGGAATAGACTG
Found at i:22238782 original size:23 final size:24
Alignment explanation
Indices: 22238721--22238771 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
22238711 TTTATTTAAT
*
22238721 TTTAAA-TCTAATATTATTTTGGTG
1 TTTAAACT-TAATATTATTTTAGTG
22238745 TTTAAACTTAATATTATTTTAGT-
1 TTTAAACTTAATATTATTTTAGTG
22238768 TTTA
1 TTTA
22238772 TTATTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 4 0.16
24 20 0.80
25 1 0.04
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (24 bp):
TTTAAACTTAATATTATTTTAGTG
Found at i:22238887 original size:45 final size:45
Alignment explanation
Indices: 22238826--22238957 Score: 160
Period size: 45 Copynumber: 2.9 Consensus size: 45
22238816 AGCATGCATT
* *
22238826 ATTATTTGTAATTTATCA-ATATTATTATTTTAAATTCATCATTAAC
1 ATTATTT-AAATTTATCATATA-TATTATTTTAAATTTATCATTAAC
* * *
22238872 ATTATTTAAATTTATCATGTATATTTATCTTAAATTTATCATTAAT
1 ATTATTTAAATTTATCATATATA-TTATTTTAAATTTATCATTAAC
*
22238918 ATTA-TTAAATTTATCATATTATATTATTTTGAATTTATCA
1 ATTATTTAAATTTATCATA-TATATTATTTTAAATTTATCA
22238958 CGTATTATTA
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
45 39 0.52
46 36 0.48
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (45 bp):
ATTATTTAAATTTATCATATATATTATTTTAAATTTATCATTAAC
Found at i:22238899 original size:13 final size:12
Alignment explanation
Indices: 22238855--22238934 Score: 66
Period size: 12 Copynumber: 7.1 Consensus size: 12
22238845 TATTATTATT
*
22238855 TTAAATTCATCA
1 TTAAATTTATCA
22238867 TTAACA-TTAT--
1 TTAA-ATTTATCA
22238877 TTAAATTTATCA
1 TTAAATTTATCA
*
22238889 TGTATATTTATC-
1 T-TAAATTTATCA
22238901 TTAAATTTATCA
1 TTAAATTTATCA
*
22238913 TT-AA--TATTA
1 TTAAATTTATCA
22238922 TTAAATTTATCA
1 TTAAATTTATCA
22238934 T
1 T
22238935 ATTATATTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 18
0.70 0.06 0.23
Matches are distributed among these distances:
9 7 0.13
10 10 0.19
11 11 0.20
12 16 0.30
13 10 0.19
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (12 bp):
TTAAATTTATCA
Found at i:22238967 original size:46 final size:45
Alignment explanation
Indices: 22238850--22238969 Score: 125
Period size: 46 Copynumber: 2.6 Consensus size: 45
22238840 ATCAATATTA
* * * *
22238850 TTATTTTAAATTCATCATTAACATTATTTAAATTTATCATGTATAT
1 TTATCTTAAATTTATCAGTAATATTA-TTAAATTTATCATGTATAT
* *
22238896 TTATCTTAAATTTATCATTAATATTATTAAATTTATCATAT-TAT
1 TTATCTTAAATTTATCAGTAATATTATTAAATTTATCATGTATAT
* * *
22238940 ATTATTTTGAATTTATCACGTATTATTATT
1 -TTATCTTAAATTTATCA-GTAATATTATT
22238970 TTTAGAATTA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 3 0.05
45 29 0.45
46 32 0.50
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (45 bp):
TTATCTTAAATTTATCAGTAATATTATTAAATTTATCATGTATAT
Found at i:22239016 original size:24 final size:24
Alignment explanation
Indices: 22238799--22239047 Score: 157
Period size: 24 Copynumber: 10.7 Consensus size: 24
22238789 TTTATTGTAC
* * * **
22238799 ATTATTATCTTAGATTTAGCATGC
1 ATTATTATTTTAAATTTATCATAT
22238823 ATTATTATTTGT-AATTTATCA-AT
1 ATTATTATTT-TAAATTTATCATAT
*
22238846 ATTATTATTTTAAATTCATCAT-T
1 ATTATTATTTTAAATTTATCATAT
** *
22238869 AACATTA-TTTAAATTTATCATGT
1 ATTATTATTTTAAATTTATCATAT
*
22238892 A-TATTTATCTTAAATTTATCAT-T
1 ATTA-TTATTTTAAATTTATCATAT
*
22238915 AATATTA--TTAAATTTATCATAT
1 ATTATTATTTTAAATTTATCATAT
* **
22238937 -TATATTATTTTGAATTTATCACGT
1 AT-TATTATTTTAAATTTATCATAT
22238961 ATTATTATTTTTAGAA-TTATCATCA-
1 ATTATTA-TTTTA-AATTTATCAT-AT
* *
22238986 A--A-AATTTTAAATTTATTATAT
1 ATTATTATTTTAAATTTATCATAT
* *
22239007 ATTATTATTTCAAATTTATTATAT
1 ATTATTATTTTAAATTTATCATAT
* *
22239031 ATTGTTTATTGTAAATT
1 ATT-ATTATTTTAAATT
22239048 ACCCTATTCA
Statistics
Matches: 179, Mismatches: 25, Indels: 41
0.73 0.10 0.17
Matches are distributed among these distances:
20 3 0.02
21 25 0.14
22 22 0.12
23 36 0.20
24 68 0.38
25 23 0.13
26 2 0.01
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.53
Consensus pattern (24 bp):
ATTATTATTTTAAATTTATCATAT
Found at i:22239379 original size:13 final size:14
Alignment explanation
Indices: 22239360--22239392 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
22239350 TTTACATGTA
22239360 ATTTTAAATGATTT
1 ATTTTAAATGATTT
22239374 -TTTT-AATGATTT
1 ATTTTAAATGATTT
22239386 ATTTTAA
1 ATTTTAA
22239393 TTTGTTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
12 8 0.47
13 8 0.47
14 1 0.06
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (14 bp):
ATTTTAAATGATTT
Found at i:22239393 original size:13 final size:13
Alignment explanation
Indices: 22239360--22239393 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
22239350 TTTACATGTA
22239360 ATTTTAAATGATTT
1 ATTTT-AATGATTT
22239374 -TTTTAATGATTT
1 ATTTTAATGATTT
22239386 ATTTTAAT
1 ATTTTAAT
22239394 TTGTTTCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (13 bp):
ATTTTAATGATTT
Found at i:22239395 original size:22 final size:22
Alignment explanation
Indices: 22239370--22239412 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
22239360 ATTTTAAATG
*
22239370 ATTTTTTTAATG-ATTTATTTTA
1 ATTTGTTTAATGTA-TTATTTTA
*
22239392 ATTTGTTTCATGTATTATTTT
1 ATTTGTTTAATGTATTATTTT
22239413 GAGTTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.67
Consensus pattern (22 bp):
ATTTGTTTAATGTATTATTTTA
Found at i:22242298 original size:16 final size:16
Alignment explanation
Indices: 22242277--22242320 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
22242267 ATGTGCAGAC
22242277 CCATGTTATATGCGAA
1 CCATGTTATATGCGAA
* *
22242293 CCATGTTGTATGTGAA
1 CCATGTTATATGCGAA
*
22242309 CCTGTGTTATAT
1 CC-ATGTTATAT
22242321 ACTAACCCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (16 bp):
CCATGTTATATGCGAA
Found at i:22242388 original size:17 final size:17
Alignment explanation
Indices: 22242366--22242437 Score: 63
Period size: 17 Copynumber: 4.2 Consensus size: 17
22242356 AACCATTTGT
*
22242366 GAACCCATAATATGTGC
1 GAACCCATAATATATGC
** * *
22242383 GAACCCATACCATGTGA
1 GAACCCATAATATATGC
** *
22242400 GAACCCATGTTGTATGC
1 GAACCCATAATATATGC
*
22242417 GAACCCATGATATATGC
1 GAACCCATAATATATGC
22242434 GAAC
1 GAAC
22242438 TTATGTTATA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 44 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (17 bp):
GAACCCATAATATATGC
Found at i:22242447 original size:17 final size:17
Alignment explanation
Indices: 22242400--22242449 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
22242390 TACCATGTGA
*
22242400 GAACCCATGTTGTATGC
1 GAACCCATGTTATATGC
*
22242417 GAACCCATGATATATGC
1 GAACCCATGTTATATGC
**
22242434 GAACTTATGTTATATG
1 GAACCCATGTTATATG
22242450 TGATCTACAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (17 bp):
GAACCCATGTTATATGC
Found at i:22242576 original size:19 final size:18
Alignment explanation
Indices: 22242552--22242593 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
22242542 TGAACTGTGT
*
22242552 TATATTATGCGAGCTCTAC
1 TATATT-TGCGAGCCCTAC
*
22242571 TATA-TTGCGAGCCCTAT
1 TATATTTGCGAGCCCTAC
22242588 TATATT
1 TATATT
22242594 GTGTACTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 14 0.70
18 2 0.10
19 4 0.20
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.40
Consensus pattern (18 bp):
TATATTTGCGAGCCCTAC
Found at i:22242581 original size:17 final size:17
Alignment explanation
Indices: 22242559--22242594 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
22242549 TGTTATATTA
*
22242559 TGCGAGCTCTACTATAT
1 TGCGAGCCCTACTATAT
*
22242576 TGCGAGCCCTATTATAT
1 TGCGAGCCCTACTATAT
22242593 TG
1 TG
22242595 TGTACTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (17 bp):
TGCGAGCCCTACTATAT
Found at i:22243816 original size:18 final size:18
Alignment explanation
Indices: 22243793--22243833 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
22243783 TCAAGTCCAA
22243793 TTGGGTAGATGCTTTGCC
1 TTGGGTAGATGCTTTGCC
*
22243811 TTGGGTAGATGCTTTGTC
1 TTGGGTAGATGCTTTGCC
22243829 TTGGG
1 TTGGG
22243834 CATCGAAGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.10, C:0.12, G:0.37, T:0.41
Consensus pattern (18 bp):
TTGGGTAGATGCTTTGCC
Found at i:22247525 original size:25 final size:25
Alignment explanation
Indices: 22247481--22247554 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 25
22247471 TTCAGCTTTT
** * *
22247481 ATGAGCTTCCCGACACTCAGCTCGC
1 ATGAGCTTCCCGTTATTCAGCTCAC
* *
22247506 TTGAGCTTCCCGTTATTCAGTTCAC
1 ATGAGCTTCCCGTTATTCAGCTCAC
* * *
22247531 ATGAGCTTCTCATTATTCAACTCA
1 ATGAGCTTCCCGTTATTCAGCTCA
22247555 GAGGATCTTA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATTCAGCTCAC
Found at i:22250796 original size:18 final size:16
Alignment explanation
Indices: 22250757--22250787 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22250747 TTAACTCAAC
22250757 GAACCCATAAATTTGT
1 GAACCCATAAATTTGT
*
22250773 GAACCCATATATTTG
1 GAACCCATAAATTTG
22250788 CATGAACCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (16 bp):
GAACCCATAAATTTGT
Found at i:22253794 original size:23 final size:23
Alignment explanation
Indices: 22253743--22253787 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
22253733 GTGTTATTGA
22253743 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
22253766 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
22253788 ATTAGTGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:22255281 original size:13 final size:13
Alignment explanation
Indices: 22255242--22255282 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
22255232 ATATTTGCAA
22255242 CATATTTCACATT
1 CATATTTCACATT
22255255 C-TATTTTCA-ATT
1 CATA-TTTCACATT
*
22255267 CATATTTCACTTT
1 CATATTTCACATT
22255280 CAT
1 CAT
22255283 TTCTCATACC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51
Consensus pattern (13 bp):
CATATTTCACATT
Found at i:22255480 original size:37 final size:38
Alignment explanation
Indices: 22255398--22255533 Score: 123
Period size: 37 Copynumber: 3.5 Consensus size: 38
22255388 ACCAGTTTGG
* **
22255398 CACCCAGTGCCTCATCGAA-TAATTCGAAGTAATAAATTGA
1 CACCCAGTGTCTCATCGAACTAAACCGAAG---TAAATTGA
* *
22255438 CACCCAGTGTCTCATC-AGCTAAACTGAAGTAAATTGA
1 CACCCAGTGTCTCATCGAACTAAACCGAAGTAAATTGA
* * *
22255475 CACCCAGTGCCTCATCGAATTAATCCGAAGTAAATAATTGA
1 CACCCAGTGTCTCATCGAACTAAACCGAAGT--A-AATTGA
*
22255516 CACACAGTGTCTCATCGA
1 CACCCAGTGTCTCATCGA
22255534 CTCGAAGTCA
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
37 23 0.29
38 10 0.13
39 1 0.01
40 23 0.29
41 22 0.28
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.24
Consensus pattern (38 bp):
CACCCAGTGTCTCATCGAACTAAACCGAAGTAAATTGA
Found at i:22255524 original size:41 final size:39
Alignment explanation
Indices: 22255398--22255533 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 39
22255388 ACCAGTTTGG
*
22255398 CACCCAGTGCCTCATCGAATAATTCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAATAATCCGAAGTAAT-AATTGA
* * * *
22255438 CACCCAGTGTCTCATC-AGCTAAACTGAAGT-A-AATTGA
1 CACCCAGTGCCTCATCGA-ATAATCCGAAGTAATAATTGA
22255475 CACCCAGTGCCTCATCGAATTAATCCGAAGTAAATAATTGA
1 CACCCAGTGCCTCATCGAA-TAATCCGAAGT-AATAATTGA
* *
22255516 CACACAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
22255534 CTCGAAGTCA
Statistics
Matches: 79, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
37 21 0.27
38 10 0.13
39 2 0.03
40 24 0.30
41 22 0.28
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGAATAATCCGAAGTAATAATTGA
Found at i:22256370 original size:10 final size:10
Alignment explanation
Indices: 22256347--22256412 Score: 53
Period size: 10 Copynumber: 6.2 Consensus size: 10
22256337 TAGTTTTTCC
22256347 TTTCTTTC-T
1 TTTCTTTCTT
22256356 TTTCTTTCTT
1 TTTCTTTCTT
*
22256366 TTTCTTTCTA
1 TTTCTTTCTT
22256376 TTTCGTTTAACCTT
1 TTTC-TTT---CTT
*
22256390 CTATCTTTCTT
1 -TTTCTTTCTT
*
22256401 TTTGTTTCTT
1 TTTCTTTCTT
22256411 TT
1 TT
22256413 ATTTATTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
9 8 0.17
10 24 0.52
11 6 0.13
14 5 0.11
15 3 0.07
ACGTcount: A:0.06, C:0.20, G:0.03, T:0.71
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:22256438 original size:12 final size:14
Alignment explanation
Indices: 22256410--22256460 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 14
22256400 TTTTGTTTCT
*
22256410 TTTATTTAT-TATA
1 TTTACTTATATATA
22256423 TTTACTT-TAT-TA
1 TTTACTTATATATA
22256435 TTTA-TTATATATA
1 TTTACTTATATATA
*
22256448 TTTACTTAAATAT
1 TTTACTTATATAT
22256461 TAAGTAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
11 2 0.06
12 10 0.31
13 13 0.41
14 7 0.22
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTACTTATATATA
Found at i:22256461 original size:25 final size:25
Alignment explanation
Indices: 22256410--22256461 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
22256400 TTTTGTTTCT
* *
22256410 TTTATTTATTATATTTACTTTATTA
1 TTTATTTATTATATTTACTTAAATA
22256435 TTTA-TTATATATATTTACTTAAATA
1 TTTATTTAT-TATATTTACTTAAATA
22256460 TT
1 TT
22256462 AAGTAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTATTTATTATATTTACTTAAATA
Found at i:22262349 original size:30 final size:30
Alignment explanation
Indices: 22262313--22262376 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
22262303 AATTTAAGGG
22262313 ACATAATTTCCTAAGTGGGGGAGAGTTGTA
1 ACATAATTTCCTAAGTGGGGGAGAGTTGTA
22262343 ACATAATTTCCTAAGTGGGGGAGAGTTGTA
1 ACATAATTTCCTAAGTGGGGGAGAGTTGTA
22262373 ACAT
1 ACAT
22262377 CTCGCCCGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (30 bp):
ACATAATTTCCTAAGTGGGGGAGAGTTGTA
Found at i:22265092 original size:23 final size:23
Alignment explanation
Indices: 22265062--22265122 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 23
22265052 GCCCGGCCCG
22265062 TTTTTAATTAAAATTAAAAAAAA
1 TTTTTAATTAAAATTAAAAAAAA
*
22265085 TTTTTAA-TAAAATTAAAACAAA
1 TTTTTAATTAAAATTAAAAAAAA
*
22265107 TTGTT-ATTAAAATTAA
1 TTTTTAATTAAAATTAA
22265123 TTGTTAGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
21 1 0.03
22 27 0.77
23 7 0.20
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
TTTTTAATTAAAATTAAAAAAAA
Found at i:22265115 original size:16 final size:16
Alignment explanation
Indices: 22265096--22265134 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
22265086 TTTTAATAAA
22265096 ATTAAAACAAATTGTT
1 ATTAAAACAAATTGTT
**
22265112 ATTAAAATTAATTGTT
1 ATTAAAACAAATTGTT
*
22265128 AGTAAAA
1 ATTAAAA
22265135 TTATCAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (16 bp):
ATTAAAACAAATTGTT
Found at i:22265135 original size:16 final size:16
Alignment explanation
Indices: 22265105--22265137 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22265095 AATTAAAACA
*
22265105 AATTGTTATTAAAATT
1 AATTGTTAGTAAAATT
22265121 AATTGTTAGTAAAATT
1 AATTGTTAGTAAAATT
22265137 A
1 A
22265138 TCAAATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (16 bp):
AATTGTTAGTAAAATT
Found at i:22265196 original size:66 final size:68
Alignment explanation
Indices: 22265126--22265268 Score: 236
Period size: 68 Copynumber: 2.1 Consensus size: 68
22265116 AAATTAATTG
* *
22265126 TTAGTAAAATTATCAAATTATTAA-T-TGTTAATTGTATTAATTGTTATAATAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAACTGTATTAATTGTATTAATTGTTATAACAAAATCTAACATT
22265189 TGA
66 TGA
* *
22265192 TTAGTAAATTTATCAAATTATTAACTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAACTGTATTAATTGTATTAATTGTTATAACAAAATCTAACATT
22265257 TGA
66 TGA
22265260 TTAGTAAAA
1 TTAGTAAAA
22265269 CAAACTTGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
66 23 0.33
67 1 0.01
68 46 0.66
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (68 bp):
TTAGTAAAATTATCAAATTATTAACTGTATTAATTGTATTAATTGTTATAACAAAATCTAACATT
TGA
Found at i:22265365 original size:25 final size:27
Alignment explanation
Indices: 22265334--22265384 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 27
22265324 AAATAAACTT
*
22265334 AAAATAAAAAAACTA-TT-ATATTTTA
1 AAAATAAAAAAAATATTTAATATTTTA
22265359 AAAATAAAAAAAATATTTAATATTTT
1 AAAATAAAAAAAATATTTAATATTTT
22265385 TCGGGCCCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.61
26 2 0.09
27 7 0.30
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (27 bp):
AAAATAAAAAAAATATTTAATATTTTA
Found at i:22266522 original size:18 final size:19
Alignment explanation
Indices: 22266499--22266536 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
22266489 CTAAATAATG
22266499 AATTAA-AATAAAAAATAA
1 AATTAATAATAAAAAATAA
**
22266517 AATTAATTTTAAAAAATAA
1 AATTAATAATAAAAAATAA
22266536 A
1 A
22266537 GCAATAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
AATTAATAATAAAAAATAA
Found at i:22271525 original size:29 final size:29
Alignment explanation
Indices: 22271491--22271555 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
22271481 ATAATTTACA
*
22271491 AAAATTAAATC-AAATCAAAATTTATGTAT
1 AAAATTAAA-CAAAATCAAAATTTATATAT
* *
22271520 AAAATTACACAAAATTAAAATTTATATAT
1 AAAATTAAACAAAATCAAAATTTATATAT
*
22271549 ACAATTA
1 AAAATTA
22271556 TATATTAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.34
Consensus pattern (29 bp):
AAAATTAAACAAAATCAAAATTTATATAT
Found at i:22276479 original size:77 final size:78
Alignment explanation
Indices: 22276360--22276539 Score: 328
Period size: 77 Copynumber: 2.3 Consensus size: 78
22276350 CAACCCCTCG
*
22276360 GGGGAATCAGCACATAGCAACCCC-CTTTTTATTTCAAAGATATGGTGGATATCGCACTTAGCAC
1 GGGGAATCAGCACATAGCAACCCCTCTTTTCATTTCAAAGATATGGTGGATATCGCACTTAGCAC
22276424 CACCAATG-AATC
66 CACCAATGAAATC
22276436 GGGGAATCAGCACATAGCAACCCCTCTTTTCATTTCAAAGATATGGTGGATATCGCACTTAGCAC
1 GGGGAATCAGCACATAGCAACCCCTCTTTTCATTTCAAAGATATGGTGGATATCGCACTTAGCAC
22276501 CACCAATGAAATC
66 CACCAATGAAATC
*
22276514 GGGGAATCAGCACTTAGCAACCCCTC
1 GGGGAATCAGCACATAGCAACCCCTC
22276540 GGGGGAATCA
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
76 24 0.24
77 47 0.47
78 29 0.29
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (78 bp):
GGGGAATCAGCACATAGCAACCCCTCTTTTCATTTCAAAGATATGGTGGATATCGCACTTAGCAC
CACCAATGAAATC
Found at i:22276972 original size:14 final size:15
Alignment explanation
Indices: 22276943--22276974 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
22276933 AAAAACATCA
22276943 TAATTTTATCTATTT
1 TAATTTTATCTATTT
22276958 TAATTTTAT-TATTT
1 TAATTTTATCTATTT
22276972 TAA
1 TAA
22276975 CTATAACCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTATCTATTT
Found at i:22279443 original size:19 final size:20
Alignment explanation
Indices: 22279406--22279443 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
22279396 TGTGAAAAGA
*
22279406 TTAAAACATTCTTGAAAATT
1 TTAAAACATTCCTGAAAATT
*
22279426 TTAAAA-ATTCCTGCAAAT
1 TTAAAACATTCCTGAAAAT
22279444 ATTGCCTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.37
Consensus pattern (20 bp):
TTAAAACATTCCTGAAAATT
Found at i:22280561 original size:3 final size:3
Alignment explanation
Indices: 22280553--22280585 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
22280543 AAAAACAAAA
22280553 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
22280586 TGAAAAACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22284730 original size:18 final size:18
Alignment explanation
Indices: 22284707--22284748 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
22284697 CACCACTCCT
*
22284707 CCACCTTCAACTT-CGCCA
1 CCACCTACAACTTCCG-CA
22284725 CCACCTACAACTTCCGCA
1 CCACCTACAACTTCCGCA
22284743 CCACCT
1 CCACCT
22284749 CCTTCAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.24, C:0.52, G:0.05, T:0.19
Consensus pattern (18 bp):
CCACCTACAACTTCCGCA
Found at i:22288815 original size:22 final size:22
Alignment explanation
Indices: 22288762--22288818 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
22288752 ATCTAAACAA
*
22288762 CCTAAAACCATAATAACAAAAC
1 CCTAAAACCTTAATAACAAAAC
*
22288784 CCTAAAACCTTAATTAA-TAAAC
1 CCTAAAACCTTAA-TAACAAAAC
22288806 CCTAAAACCTTAA
1 CCTAAAACCTTAA
22288819 ATTTTATAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 29 0.91
23 3 0.09
ACGTcount: A:0.53, C:0.26, G:0.00, T:0.21
Consensus pattern (22 bp):
CCTAAAACCTTAATAACAAAAC
Found at i:22289354 original size:18 final size:18
Alignment explanation
Indices: 22289327--22289373 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
22289317 AAATTTATAA
*
22289327 TTTT-TATATTATGTTAT
1 TTTTATATATTATGTAAT
22289344 TTTTATATATTATGTAAT
1 TTTTATATATTATGTAAT
*
22289362 TTATAATATATT
1 TT-TTATATATT
22289374 TAAAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 4 0.15
18 14 0.54
19 8 0.31
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (18 bp):
TTTTATATATTATGTAAT
Found at i:22296772 original size:3 final size:3
Alignment explanation
Indices: 22296764--22296819 Score: 58
Period size: 3 Copynumber: 18.7 Consensus size: 3
22296754 CAATATAAAT
* * * * *
22296764 ATA ATA ATA GTA GTA GTA ATA ATA ATA ATA ATA TTA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
22296812 GTA ATA AT
1 ATA ATA AT
22296820 GAAGCTCAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:22300637 original size:6 final size:6
Alignment explanation
Indices: 22300617--22300654 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
22300607 CATAGAAACA
*
22300617 TGCA-T TGCATA TGCATT TGCATT TGCATT TGCATT TGC
1 TGCATT TGCATT TGCATT TGCATT TGCATT TGCATT TGC
22300655 GTACCAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (6 bp):
TGCATT
Found at i:22301155 original size:13 final size:13
Alignment explanation
Indices: 22301139--22301177 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
22301129 TAAACCAAAT
22301139 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
22301152 TTTTCAAAATCAC
1 TTTTCAAAAGCAC
*
22301165 TTTTCTAAAGCAC
1 TTTTCAAAAGCAC
22301178 AAAAGTACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:22302746 original size:13 final size:13
Alignment explanation
Indices: 22302715--22302739 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22302705 CTGCTAATCT
22302715 AAGTTTAAAAAGA
1 AAGTTTAAAAAGA
22302728 AAGTTTAAAAAG
1 AAGTTTAAAAAG
22302740 GATGTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (13 bp):
AAGTTTAAAAAGA
Found at i:22305282 original size:9 final size:9
Alignment explanation
Indices: 22305268--22305304 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
22305258 TATAGTTTAA
22305268 TATTCGAAT
1 TATTCGAAT
22305277 TATTCGAAT
1 TATTCGAAT
*
22305286 TATTCGAGT
1 TATTCGAAT
22305295 TATTCGAAT
1 TATTCGAAT
22305304 T
1 T
22305305 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:22305376 original size:9 final size:9
Alignment explanation
Indices: 22305359--22305389 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22305349 TCAAGTTGAT
22305359 TCGAATAAC
1 TCGAATAAC
*
22305368 TCGATTAAC
1 TCGAATAAC
22305377 TCGAATAAC
1 TCGAATAAC
22305386 TCGA
1 TCGA
22305390 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:22315677 original size:11 final size:11
Alignment explanation
Indices: 22315661--22315687 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22315651 AATAAAAATA
22315661 AAAAAATAAAC
1 AAAAAATAAAC
22315672 AAAAAATAAAC
1 AAAAAATAAAC
22315683 AAAAA
1 AAAAA
22315688 GGAAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.85, C:0.07, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAAATAAAC
Found at i:22318304 original size:17 final size:17
Alignment explanation
Indices: 22318278--22318310 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22318268 GTATTGATTT
*
22318278 TGACATCTCTATGTCAA
1 TGACAACTCTATGTCAA
22318295 TGACAACTCTATGTCA
1 TGACAACTCTATGTCA
22318311 TCAATCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (17 bp):
TGACAACTCTATGTCAA
Found at i:22323299 original size:66 final size:65
Alignment explanation
Indices: 22323219--22323344 Score: 173
Period size: 66 Copynumber: 1.9 Consensus size: 65
22323209 TTATTGCATT
* ** *
22323219 AATGTCCTGCATGAGTTAA-TCCAAGATTACGTCCAGAATTATCGCTGCACTTGACAGCTGCCCG
1 AATGTCCTACATGAGTTAATTCC-AGATTACGTCCAGAATTATCGCCACACCTGACAGCTGCCCG
22323283 C
65 C
* *
22323284 AATGTCGCTACATGAGTTAATTCCAGATTGCGTCCAGAATTGTCGCCACACCTGACAGCTG
1 AATGTC-CTACATGAGTTAATTCCAGATTACGTCCAGAATTATCGCCACACCTGACAGCTG
22323345 TCCGGAAAAG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
65 6 0.11
66 44 0.83
67 3 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (65 bp):
AATGTCCTACATGAGTTAATTCCAGATTACGTCCAGAATTATCGCCACACCTGACAGCTGCCCGC
Found at i:22324974 original size:27 final size:26
Alignment explanation
Indices: 22324944--22325053 Score: 103
Period size: 27 Copynumber: 4.1 Consensus size: 26
22324934 AGGCATTCCC
* *
22324944 TTCATAGATCGTCATGAAGGCTTCCTT
1 TTCATAGATCGCCA-AAAGGCTTCCTT
* * *
22324971 TTCATAAATAGCCACAAAGGTTTCCTT
1 TTCATAGATCGCCA-AAAGGCTTCCTT
* * *
22324998 TCCATAGATTGCCAAAAGGACTTTCTT
1 TTCATAGATCGCCAAAAGG-CTTCCTT
*
22325025 TTCATAGATCGCTACAAAGGCTTCCTT
1 TTCATAGATCGCCA-AAAGGCTTCCTT
22325052 TT
1 TT
22325054 TCTAGCGTGT
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
26 5 0.08
27 56 0.85
28 5 0.08
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (26 bp):
TTCATAGATCGCCAAAAGGCTTCCTT
Found at i:22326249 original size:29 final size:29
Alignment explanation
Indices: 22326207--22326264 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
22326197 AGATGAACTG
22326207 GGCGTACAACACCTTTGGCAATAATCCCT
1 GGCGTACAACACCTTTGGCAATAATCCCT
22326236 GGCGTACAACACCTTTGGCAATAATCCCT
1 GGCGTACAACACCTTTGGCAATAATCCCT
22326265 TACTTATAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (29 bp):
GGCGTACAACACCTTTGGCAATAATCCCT
Found at i:22332983 original size:21 final size:21
Alignment explanation
Indices: 22332954--22332997 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
22332944 AGTCATATGT
*
22332954 AACAGTCGATTTAAACATATA
1 AACAATCGATTTAAACATATA
22332975 AACAATCGATTTAAACATATA
1 AACAATCGATTTAAACATATA
22332996 AA
1 AA
22332998 AAATGTATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (21 bp):
AACAATCGATTTAAACATATA
Found at i:22335564 original size:12 final size:11
Alignment explanation
Indices: 22335541--22335603 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
22335531 CTATAACATC
*
22335541 CATTTAATTTT
1 CATTTCATTTT
22335552 CATTTCCATTTT
1 CATTT-CATTTT
* *
22335564 CATATCATTCT
1 CATTTCATTTT
*
22335575 CATTTTCATTCT
1 CA-TTTCATTTT
*
22335587 CATTTCAATTT
1 CATTTCATTTT
22335598 CATTTC
1 CATTTC
22335604 CGCAGTTGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
11 25 0.57
12 19 0.43
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (11 bp):
CATTTCATTTT
Found at i:22335571 original size:17 final size:18
Alignment explanation
Indices: 22335551--22335601 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 18
22335541 CATTTAATTT
22335551 TCATTTCCATTTTCA-TA
1 TCATTTCCATTTTCATTA
*
22335568 TCA-TTCTCATTTTCATTC
1 TCATTTC-CATTTTCATTA
*
22335586 TCATTT-CAATTTCATT
1 TCATTTCCATTTTCATT
22335602 TCCGCAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 3 0.10
17 20 0.69
18 4 0.14
19 2 0.07
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.55
Consensus pattern (18 bp):
TCATTTCCATTTTCATTA
Found at i:22335584 original size:23 final size:23
Alignment explanation
Indices: 22335549--22335604 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
22335539 TCCATTTAAT
*
22335549 TTTCATTTCCATTTTCATATC-A
1 TTTCATTTCCATTCTCATATCAA
* *
22335571 TTCTCATTTTCATTCTCATTTCAA
1 TT-TCATTTCCATTCTCATATCAA
22335595 TTTCATTTCC
1 TTTCATTTCC
22335605 GCAGTTGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 2 0.07
23 23 0.82
24 3 0.11
ACGTcount: A:0.20, C:0.25, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTCATTTCCATTCTCATATCAA
Found at i:22338931 original size:25 final size:25
Alignment explanation
Indices: 22338894--22338960 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
22338884 GACACACCAC
*
22338894 AGCTCGTATGAGCTTACCGATTTAT
1 AGCTCGTATGAGCATACCGATTTAT
*
22338919 AGCTCGTGA-GAGCATACTGATTTAT
1 AGCTCGT-ATGAGCATACCGATTTAT
22338944 AGCTCGTATGAGCATAC
1 AGCTCGTATGAGCATAC
22338961 ATGTATAGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (25 bp):
AGCTCGTATGAGCATACCGATTTAT
Found at i:22341096 original size:24 final size:23
Alignment explanation
Indices: 22341052--22341096 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
22341042 CAATTATATC
*
22341052 ATCTTGATTAAATCTTATTTAAA
1 ATCTTGATTAAACCTTATTTAAA
22341075 ATCTTGCATTAGAACCTT-TTTA
1 ATCTTG-ATTA-AACCTTATTTA
22341097 TTTTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 6 0.32
24 8 0.42
25 5 0.26
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (23 bp):
ATCTTGATTAAACCTTATTTAAA
Found at i:22347221 original size:22 final size:21
Alignment explanation
Indices: 22347196--22347239 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
22347186 TGATAAAATT
22347196 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
22347218 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
22347239 T
1 T
22347240 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:22354817 original size:12 final size:12
Alignment explanation
Indices: 22354800--22354829 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22354790 TATGTCAGGT
22354800 CGTGTACTAGGC
1 CGTGTACTAGGC
*
22354812 CGTGTACTAGGT
1 CGTGTACTAGGC
22354824 CGTGTA
1 CGTGTA
22354830 ACTCATTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.33, T:0.30
Consensus pattern (12 bp):
CGTGTACTAGGC
Found at i:22356969 original size:23 final size:23
Alignment explanation
Indices: 22356943--22357006 Score: 87
Period size: 21 Copynumber: 2.8 Consensus size: 23
22356933 TCTTAGTAAT
*
22356943 GCCTTTATGGCGTATTCTATTTG
1 GCCTTTGTGGCGTATTCTATTTG
*
22356966 GCCTTTGTGGC--ATTCTATTTT
1 GCCTTTGTGGCGTATTCTATTTG
22356987 GCCTTTGTGGCGTACTTCTA
1 GCCTTTGTGGCGTA-TTCTA
22357007 CTAAAGCTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 20 0.56
23 11 0.31
24 5 0.14
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (23 bp):
GCCTTTGTGGCGTATTCTATTTG
Found at i:22362168 original size:45 final size:41
Alignment explanation
Indices: 22362109--22362218 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
22362099 TTTGGTTCGC
* *
22362109 TGTATTGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
22362151 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
22362194 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
22362219 TGATGGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 21 0.38
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:22363776 original size:35 final size:35
Alignment explanation
Indices: 22363730--22364571 Score: 1684
Period size: 35 Copynumber: 24.1 Consensus size: 35
22363720 GTTACATGGT
22363730 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22363765 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22363800 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22363835 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22363870 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22363905 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22363940 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22363975 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364010 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364045 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364080 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364115 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364150 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364185 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364220 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364255 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364290 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364325 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364360 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364395 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364430 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364465 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364500 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364535 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
1 ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
22364570 AC
1 AC
22364572 ATTAGAATTT
Statistics
Matches: 807, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 807 1.00
ACGTcount: A:0.37, C:0.34, G:0.03, T:0.26
Consensus pattern (35 bp):
ACTTTTGCCTCAACTAAACCTATATCCAAAACCAC
Found at i:22366393 original size:13 final size:14
Alignment explanation
Indices: 22366362--22366403 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
22366352 ATGTGAAGAA
22366362 TATTATTTAAAATTAT
1 TATT-TTTAAAA-TAT
22366378 TATTTTTAAAAT-T
1 TATTTTTAAAATAT
*
22366391 TATTCTTAAAATA
1 TATTTTTAAAATA
22366404 AAATTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.50
14 1 0.04
15 7 0.29
16 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTTTTAAAATAT
Found at i:22372563 original size:10 final size:10
Alignment explanation
Indices: 22372545--22372582 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
22372535 AGGGTCATAG
22372545 TATTTAATTA
1 TATTTAATTA
*
22372555 TAATTAATTA
1 TATTTAATTA
22372565 TTATTTAATTA
1 -TATTTAATTA
22372576 TATTTAA
1 TATTTAA
22372583 ATAAAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TATTTAATTA
Done.