Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 69 of 141
Found at i:22373979 original size:26 final size:26
Alignment explanation
Indices: 22373950--22374002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22373940 GGATTATTAC
22373950 AATGCTTCATCAGAGTCTCTATTTAT
1 AATGCTTCATCAGAGTCTCTATTTAT
*
22373976 AATGCTTTATCAGAGTCTCTATTTAT
1 AATGCTTCATCAGAGTCTCTATTTAT
22374002 A
1 A
22374003 GGCATAAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.43
Consensus pattern (26 bp):
AATGCTTCATCAGAGTCTCTATTTAT
Found at i:22378298 original size:15 final size:15
Alignment explanation
Indices: 22378261--22378302 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
22378251 TCGAAGTTAA
*
22378261 AAACCTGAGTTTTTG
1 AAACCTGTGTTTTTG
22378276 AAACCTGTGTTTTTG
1 AAACCTGTGTTTTTG
22378291 AAACCTGT-TTTT
1 AAACCTGTGTTTT
22378303 AAAAACCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.45
Consensus pattern (15 bp):
AAACCTGTGTTTTTG
Found at i:22379451 original size:9 final size:9
Alignment explanation
Indices: 22379437--22379473 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
22379427 TATAATTTGA
22379437 TATTCGAAT
1 TATTCGAAT
22379446 TATTCGAAT
1 TATTCGAAT
*
22379455 TATTCGAGT
1 TATTCGAAT
22379464 TATTCGAAT
1 TATTCGAAT
22379473 T
1 T
22379474 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:22379814 original size:43 final size:44
Alignment explanation
Indices: 22379737--22379820 Score: 125
Period size: 43 Copynumber: 1.9 Consensus size: 44
22379727 GGGACTTGGG
* *
22379737 GGAGGAGGAGGATGAACAATGGAAAGAAACAATGGATATGACTT
1 GGAGGAGGAGGACGAACAATGGAAAGAAACAATGGAGATGACTT
* *
22379781 GGAGGAGGAGGACGAA-GATGGAAAGAAATAATGGAGATGA
1 GGAGGAGGAGGACGAACAATGGAAAGAAACAATGGAGATGA
22379821 TGATGATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 21 0.58
44 15 0.42
ACGTcount: A:0.44, C:0.05, G:0.38, T:0.13
Consensus pattern (44 bp):
GGAGGAGGAGGACGAACAATGGAAAGAAACAATGGAGATGACTT
Found at i:22381629 original size:23 final size:23
Alignment explanation
Indices: 22381559--22381629 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
22381549 TAATTTAAAC
*
22381559 AAATACTCAT-ATTTAT-ATCATT
1 AAATATTCATAATTTATAAT-ATT
*
22381581 AAGATATTCATAATTTATACTA-T
1 AA-ATATTCATAATTTATAATATT
*
22381604 AAATATTTATAAATTT-TAATATT
1 AAATATTCAT-AATTTATAATATT
22381627 AAA
1 AAA
22381630 ATTGTAATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
22 13 0.32
23 19 0.47
24 7 0.17
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.45
Consensus pattern (23 bp):
AAATATTCATAATTTATAATATT
Found at i:22381637 original size:14 final size:14
Alignment explanation
Indices: 22381614--22381643 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22381604 AAATATTTAT
*
22381614 AAATTTTAATATTA
1 AAATTGTAATATTA
22381628 AAATTGTAATATTA
1 AAATTGTAATATTA
22381642 AA
1 AA
22381644 TAATTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (14 bp):
AAATTGTAATATTA
Found at i:22390451 original size:28 final size:27
Alignment explanation
Indices: 22390395--22390467 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
22390385 CTCGGCCCAT
* * *
22390395 TTTTAAAAT--AAACATTAAAAAATTA
1 TTTTAAAATAAAAAAATAAAAAAAATA
22390420 TTTTAAAAATAAAAAAATAAAAAAAATA
1 TTTT-AAAATAAAAAAATAAAAAAAATA
* *
22390448 TTTTAAATTTAAAAAATAAA
1 TTTTAAAATAAAAAAATAAA
22390468 TTACTAAGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 4 0.10
26 5 0.12
27 14 0.35
28 17 0.43
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (27 bp):
TTTTAAAATAAAAAAATAAAAAAAATA
Found at i:22390461 original size:27 final size:28
Alignment explanation
Indices: 22390411--22390467 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
22390401 AATAAACATT
*
22390411 AAAAAATTATTTTAAAAATAAAAAAATA
1 AAAAAAATATTTTAAAAATAAAAAAATA
* *
22390439 AAAAAAATATTTT-AAATTTAAAAAATA
1 AAAAAAATATTTTAAAAATAAAAAAATA
22390466 AA
1 AA
22390468 TTACTAAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (28 bp):
AAAAAAATATTTTAAAAATAAAAAAATA
Found at i:22390540 original size:24 final size:25
Alignment explanation
Indices: 22390512--22390574 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
22390502 CCCATATTAA
*
22390512 ATATTTAATATATATA-AAAAATAT
1 ATATTTAATATATAAATAAAAATAT
* *
22390536 ATATTTGAT-TAAAAATAAAAATAT
1 ATATTTAATATATAAATAAAAATAT
22390560 ATATTTAATATATAA
1 ATATTTAATATATAA
22390575 TTCGGGCCGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
23 4 0.12
24 24 0.75
25 4 0.12
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
ATATTTAATATATAAATAAAAATAT
Found at i:22408311 original size:33 final size:33
Alignment explanation
Indices: 22408285--22408423 Score: 199
Period size: 33 Copynumber: 4.2 Consensus size: 33
22408275 ATCCCTCCAG
*
22408285 CACACCAATGCTCAGAAGAGCTAATCCAACCAA
1 CACACCAATGCTCATAAGAGCTAATCCAACCAA
* *
22408318 CACACCAATGCTTATAAGAGCTAATCCAACCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAA
* * *
22408351 CACACTAGTGCTCATAAGAGCTAATCCAACCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAA
* *
22408384 CACA-CAGTGCTCATAAGAGCTAGTCCAACCAA
1 CACACCAATGCTCATAAGAGCTAATCCAACCAA
22408416 CACACCAA
1 CACACCAA
22408424 ACAGAGAGTA
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
32 29 0.31
33 66 0.69
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.17
Consensus pattern (33 bp):
CACACCAATGCTCATAAGAGCTAATCCAACCAA
Found at i:22408363 original size:66 final size:65
Alignment explanation
Indices: 22408293--22408420 Score: 193
Period size: 65 Copynumber: 2.0 Consensus size: 65
22408283 AGCACACCAA
* *
22408293 TGCTCAGAAGAGCTAATCCAACCAACACACCAATGCTTATAAGAGCTAATCCAACCATCACACTA
1 TGCTCAGAAGAGCTAATCCAACCAACACA-CAATGCTCATAAGAGCTAATCCAACCAACACACTA
22408358 G
65 G
* * * *
22408359 TGCTCATAAGAGCTAATCCAACCATCACACAGTGCTCATAAGAGCTAGTCCAACCAACACAC
1 TGCTCAGAAGAGCTAATCCAACCAACACACAATGCTCATAAGAGCTAATCCAACCAACACAC
22408421 CAAACAGAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
65 29 0.52
66 27 0.48
ACGTcount: A:0.38, C:0.31, G:0.12, T:0.18
Consensus pattern (65 bp):
TGCTCAGAAGAGCTAATCCAACCAACACACAATGCTCATAAGAGCTAATCCAACCAACACACTAG
Found at i:22422536 original size:55 final size:51
Alignment explanation
Indices: 22422457--22422645 Score: 186
Period size: 50 Copynumber: 3.7 Consensus size: 51
22422447 GATGAGATCT
* * * *
22422457 CATGTAAGACCATGTTTGGAACATGGCATTGGCATCATTGAGATTATGAGGGCCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C-CT-AGATGA-GAGGGCCC
*
22422512 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGTCCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGGCCC
* * * * *
22422563 C-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGA--ACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGGC-CC
* * * *
22422612 CATGTAAGACCATATATGGGATATAGCATTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
22422646 GTACAGGAAA
Statistics
Matches: 116, Mismatches: 16, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
48 1 0.01
49 3 0.03
50 65 0.56
51 8 0.07
52 5 0.04
53 1 0.01
54 1 0.01
55 32 0.28
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (51 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGGGCCC
Found at i:22434155 original size:21 final size:20
Alignment explanation
Indices: 22434131--22434174 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
22434121 AAAGGGGGCG
22434131 CACGTGCGCAGAGGCTCGGCA
1 CACG-GCGCAGAGGCTCGGCA
*
22434152 CAC-GCGCGGAGGCTCGGCA
1 CACGGCGCAGAGGCTCGGCA
22434171 CACG
1 CACG
22434175 CAGAGGGCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 18 0.86
21 3 0.14
ACGTcount: A:0.18, C:0.36, G:0.39, T:0.07
Consensus pattern (20 bp):
CACGGCGCAGAGGCTCGGCA
Found at i:22434158 original size:19 final size:19
Alignment explanation
Indices: 22434136--22434175 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
22434126 GGGCGCACGT
22434136 GCGCAGAGGCTCGGCACAC
1 GCGCAGAGGCTCGGCACAC
*
22434155 GCGCGGAGGCTCGGCACAC
1 GCGCAGAGGCTCGGCACAC
22434174 GC
1 GC
22434176 AGAGGGCAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.38, G:0.40, T:0.05
Consensus pattern (19 bp):
GCGCAGAGGCTCGGCACAC
Found at i:22442566 original size:50 final size:49
Alignment explanation
Indices: 22442511--22442704 Score: 210
Period size: 50 Copynumber: 3.9 Consensus size: 49
22442501 CATTGAGATT
* * *
22442511 ATGAGAGATCACATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGAC
* ** * * *
22442561 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGACATGGGCATCGAT
1 ATGAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGAC
* * *
22442611 ATGAGAGCTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTAC
1 ATGAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-AC
* * * *
22442660 AAGAAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATGAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
22442705 TGTTATTATC
Statistics
Matches: 119, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
48 1 0.01
49 39 0.33
50 79 0.66
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (49 bp):
ATGAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGAC
Found at i:22447346 original size:45 final size:45
Alignment explanation
Indices: 22447282--22447382 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 45
22447272 TTAGGTTGGA
* * *
22447282 TTTGGTATGCTGGTGTTGATTTTTGCTTATTGTTTTAAGGTCGAT
1 TTTGGTATGCTGATATTGATTTTTGCTTATTATTTTAAGGTCGAT
* * *
22447327 TTTGGTATGTTGATATTGATTTTTGCTTATTATTTTAAGGTTGGT
1 TTTGGTATGCTGATATTGATTTTTGCTTATTATTTTAAGGTCGAT
*
22447372 TTTTGTATGCT
1 TTTGGTATGCT
22447383 AAAATTTATT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.15, C:0.05, G:0.24, T:0.56
Consensus pattern (45 bp):
TTTGGTATGCTGATATTGATTTTTGCTTATTATTTTAAGGTCGAT
Found at i:22447394 original size:45 final size:45
Alignment explanation
Indices: 22447297--22447395 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
22447287 TATGCTGGTG
* * * *
22447297 TTGATTTTTGCTTATTGTTTTAAGGTCGATTTTGGTATGTTGATA
1 TTGATTTTTGCTTATTATTTTAAGGTCGATTTTGGTATGCTAAAA
* * *
22447342 TTGATTTTTGCTTATTATTTTAAGGTTGGTTTTTGTATGCTAAAA
1 TTGATTTTTGCTTATTATTTTAAGGTCGATTTTGGTATGCTAAAA
*
22447387 TTTATTTTT
1 TTGATTTTT
22447396 AGAAATTGTT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.19, C:0.04, G:0.18, T:0.59
Consensus pattern (45 bp):
TTGATTTTTGCTTATTATTTTAAGGTCGATTTTGGTATGCTAAAA
Found at i:22449390 original size:26 final size:26
Alignment explanation
Indices: 22449309--22449390 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
22449299 GATAGGTCGC
22449309 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* * *
22449335 ACGTGTA-T-CGAATG-GTAATGG-TCAC-
1 ATGTGTAGTAC-TATGTG-CA-GGCT-ACT
22449360 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
22449386 ATGTG
1 ATGTG
22449391 AACCGAACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.39
26 21 0.51
27 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:22449483 original size:45 final size:45
Alignment explanation
Indices: 22449392--22449486 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
22449382 TACTATGTGA
* * *
22449392 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGTTAAATCC
*
22449437 ACCGAACATTATTGATTAATAAAGTGGTTGCTATGT-TCTAAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGT-TAAATCC
22449482 ACCGA
1 ACCGA
22449487 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 1 0.02
45 44 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGTTAAATCC
Found at i:22468986 original size:132 final size:132
Alignment explanation
Indices: 22468621--22468969 Score: 488
Period size: 132 Copynumber: 2.6 Consensus size: 132
22468611 TTCCCTACTA
* * * * *
22468621 TCTTGGGAAGATAATATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGATACAGAATTTAC
1 TCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAG-ATCTAC
* * * *
22468686 AATCTT-TGACCTATTCAACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCA
65 AATCTTCTAACCTATTCCACTACTACTTAGGGAGATAGAACTAATGACTTAAATCTGCTTCTCCA
22468750 CTG
130 CTG
*
22468753 TCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGATTCTAC
1 TCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA-TCTAC
* *
22468818 AATCTTC-AACCTACTCCACTACTACTTAGGGAGATAGAACTAATGACTTAAATCTGCTTCTCCG
65 AATCTTCTAACCTATTCCACTACTACTTAGGGAGATAGAACTAATGACTTAAATCTGCTTCTCCA
*
22468882 TTG
130 CTG
* * * *
22468885 TCTTGGGAAGATAAGATTCACTATCTTCGATCTGCTCCGCTGCTGCTTAGGAAGACAAGATCTAC
1 TCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGAC-AGATCTAC
*
22468950 AAT-TTCTAATCTATTCCACT
65 AATCTTCTAACCTATTCCACT
22468970 GCTGGCCAGG
Statistics
Matches: 193, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
131 4 0.02
132 186 0.96
133 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (132 bp):
TCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGATCTACA
ATCTTCTAACCTATTCCACTACTACTTAGGGAGATAGAACTAATGACTTAAATCTGCTTCTCCAC
TG
Found at i:22469056 original size:88 final size:88
Alignment explanation
Indices: 22468996--22470663 Score: 2505
Period size: 88 Copynumber: 19.0 Consensus size: 88
22468986 GGATTTGTAA
* *
22468996 CTTCGATCTGCTTCGCTGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22469061 ACCGAG-GAAGGCAAGGTTTGTGT
66 ACCGAGAG-AGGCAAGGTTTGTGT
* * * **
22469084 CTTCGATCTGCTTCGTTGTCAATGCAGGAAGGTAAGATTTGTTGTCTTCAACCAGCTCTACTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
* *
22469149 ATCGAGTGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
22469172 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
* *
22469237 ACCGAGAGAGGCGACGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * * *
22469260 CTTCGATCTGCTTTGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCAACCGGCTCTGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
*
22469325 ACTGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * * **
22469348 CTTCGATCTACTTCGCTATCAATGCAGGAAGGCAATATCTGTTGTCTTCAACTGGCTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22469413 ACCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * *
22469436 CTTCGATCTACTTCGCTATCAATGCAGGAAGGCAACATCTGTTGTCTTCAACCAGCTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22469501 ACCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* *
22469524 CTTCGATCTGCTTCGCTGCCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22469589 ACCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * * * * *
22469612 CTTCAATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTTTTGCCTTCAACCAACTCCACTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22469677 ACCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * * * * * *
22469700 CTTCAATCTGCTTTGCTGTCAAGGCAGGAAGGGAAGATCTGTTATTTTCAACCAGCTCTGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22469765 ACCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * *
22469788 CTTCAATCTACTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
*
22469853 ATCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * *
22469876 CTTCGATCTACTTCACTGTTAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
*
22469941 ATCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * ***
22469964 CTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTTTACTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
*
22470029 ACCGAG-GAAGGTAAGGTTTGTGT
66 ACCGAGAG-AGGCAAGGTTTGTGT
** * * *
22470052 CTTCGATCTGCTTCATTGTCAATGCAGGAAGGAAAGATCTGTTGCCTTCAACCAGCTCCACTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22470117 ACCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * * * *
22470140 CTTCAATCTGCTTTGCTGTCAAGGCAGGAAGGTAAGATCTGTTATCTTCAACCAGCTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22470205 ACCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * * * * * *
22470228 CTTCAATCTACTTTGCTGTTAATGTAGGAAGGCAATATCTGTTGTCTTCAACTAGCTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22470293 ACCGAGAGAGGCAAGGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * * *
22470316 CTTCGATCTACTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGTTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
* *
22470381 ATCGAGAGAGGCAAGGCTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* *
22470404 CTTCGATCTGCTTTGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
*
22470469 ACCGAGAGAGGCAAGGTTTGTAT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * * **
22470492 CTTCAATCTGCTTCGCTGTCAAGGCAGGAACGCAAGATCTGTTGTCTTCAACCAGCTCTACTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
*
22470557 ACCGAGAGAGGCAATGTTTGTGT
66 ACCGAGAGAGGCAAGGTTTGTGT
* * *
22470580 CTTCGATCTGCTTCGCTGTCGATGCAGGAAGGAAAGATCTGTTGTCTTCAA-CAACTCCGCTACA
1 CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
22470644 ACCGAGAGAGGCAAGGTTTG
66 ACCGAGAGAGGCAAGGTTTG
22470664 GGCTTGTAAC
Statistics
Matches: 1445, Mismatches: 132, Indels: 7
0.91 0.08 0.00
Matches are distributed among these distances:
87 30 0.02
88 1413 0.98
89 2 0.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (88 bp):
CTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACA
ACCGAGAGAGGCAAGGTTTGTGT
Found at i:22480210 original size:16 final size:16
Alignment explanation
Indices: 22480170--22480210 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
22480160 CGTTTGGTTT
22480170 ATTGTAATGGAATAAA
1 ATTGTAATGGAATAAA
** *
22480186 GCTGCAATGGAATAAA
1 ATTGTAATGGAATAAA
22480202 ATTGTAATG
1 ATTGTAATG
22480211 AAATTGAGCT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (16 bp):
ATTGTAATGGAATAAA
Found at i:22480221 original size:32 final size:32
Alignment explanation
Indices: 22480170--22480231 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
22480160 CGTTTGGTTT
* *
22480170 ATTGTAATGGAATAAAGCTGCAATGGAATAAA
1 ATTGTAATGAAATAAAGCTGCAATAGAATAAA
** *
22480202 ATTGTAATGAAATTGAGCTGTAATAGAATA
1 ATTGTAATGAAATAAAGCTGCAATAGAATA
22480232 GACCTGTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (32 bp):
ATTGTAATGAAATAAAGCTGCAATAGAATAAA
Found at i:22480565 original size:5 final size:5
Alignment explanation
Indices: 22480555--22480590 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
22480545 TGAGCATTCG
22480555 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
22480591 AATTTTCGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:22499958 original size:9 final size:9
Alignment explanation
Indices: 22499940--22499985 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
22499930 AATAATAATT
*
22499940 AAAATTTTA
1 AAAATATTA
22499949 AAAATATTA
1 AAAATATTA
22499958 AAAAT-TTA
1 AAAATATTA
22499966 AAAATA--A
1 AAAATATTA
*
22499973 AAAAAATTA
1 AAAATATTA
22499982 AAAA
1 AAAA
22499986 AAAAGTGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
7 6 0.19
8 8 0.25
9 18 0.56
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
AAAATATTA
Found at i:22499959 original size:17 final size:17
Alignment explanation
Indices: 22499937--22499985 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
22499927 AGTAATAATA
*
22499937 ATTAAAATTTTAAAAAT
1 ATTAAAAATTTAAAAAT
22499954 ATTAAAAATTTAAAAAT
1 ATTAAAAATTTAAAAAT
* *
22499971 A-AAAAAAATTAAAAA
1 ATTAAAAATTTAAAAA
22499986 AAAAGTGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 12 0.41
17 17 0.59
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
ATTAAAAATTTAAAAAT
Found at i:22499969 original size:8 final size:8
Alignment explanation
Indices: 22499938--22499985 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
22499928 GTAATAATAA
*
22499938 TTAAAATT
1 TTAAAAAT
22499946 TTAAAAAT
1 TTAAAAAT
22499954 ATTAAAAAT
1 -TTAAAAAT
22499963 TTAAAAAT
1 TTAAAAAT
** *
22499971 AAAAAAAA
1 TTAAAAAT
22499979 TTAAAAA
1 TTAAAAA
22499986 AAAAGTGTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
8 25 0.76
9 8 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
TTAAAAAT
Found at i:22516705 original size:19 final size:19
Alignment explanation
Indices: 22516681--22516718 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
22516671 TGCAAATGAA
22516681 TCATTTCTCATTTT-ATTTT
1 TCATTTCT-ATTTTCATTTT
22516700 TCATTTCTATTTTCATTTT
1 TCATTTCTATTTTCATTTT
22516719 GAGAAAACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (19 bp):
TCATTTCTATTTTCATTTT
Found at i:22519160 original size:27 final size:27
Alignment explanation
Indices: 22519130--22519183 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
22519120 TACATGACCA
22519130 TTCTTTAGCATATTTTCATGTTAACTC
1 TTCTTTAGCATATTTTCATGTTAACTC
22519157 TTCTTTAGCATATTTTCATGTTAACTC
1 TTCTTTAGCATATTTTCATGTTAACTC
22519184 CATAAATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.52
Consensus pattern (27 bp):
TTCTTTAGCATATTTTCATGTTAACTC
Found at i:22520626 original size:21 final size:21
Alignment explanation
Indices: 22520596--22520642 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
22520586 AATTAAAACT
*
22520596 TTTAAAAAATTGCAAGAGA-A
1 TTTAAAAAATTGCAAAAGAGA
*
22520616 TTTACAAAAATTTCAAAAGAGA
1 TTTA-AAAAATTGCAAAAGAGA
22520638 TTTAA
1 TTTAA
22520643 TTAAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 4 0.17
21 14 0.61
22 5 0.22
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.30
Consensus pattern (21 bp):
TTTAAAAAATTGCAAAAGAGA
Found at i:22521275 original size:6 final size:6
Alignment explanation
Indices: 22521264--22521314 Score: 93
Period size: 6 Copynumber: 8.5 Consensus size: 6
22521254 ACAACAATGA
*
22521264 CTCACT CTCACT CTCACT CTCACT CTCACT CTCACT CGCACT CTCACT
1 CTCACT CTCACT CTCACT CTCACT CTCACT CTCACT CTCACT CTCACT
22521312 CTC
1 CTC
22521315 TTACATGTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.16, C:0.51, G:0.02, T:0.31
Consensus pattern (6 bp):
CTCACT
Found at i:22522576 original size:7 final size:7
Alignment explanation
Indices: 22522564--22522588 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22522554 CCTATACTCT
22522564 TTTAAAA
1 TTTAAAA
22522571 TTTAAAA
1 TTTAAAA
22522578 TTTAAAA
1 TTTAAAA
22522585 TTTA
1 TTTA
22522589 GTCTCCATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAAAA
Found at i:22522834 original size:17 final size:17
Alignment explanation
Indices: 22522812--22522861 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
22522802 TTTTTTCCAA
22522812 TAAAAATTCTAAAATTT
1 TAAAAATTCTAAAATTT
* *
22522829 TAAAAA-TATATAATTT
1 TAAAAATTCTAAAATTT
22522845 TGAAAAATTC-AAAATTT
1 T-AAAAATTCTAAAATTT
22522862 ATGAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
16 9 0.33
17 17 0.63
18 1 0.04
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (17 bp):
TAAAAATTCTAAAATTT
Found at i:22524192 original size:12 final size:12
Alignment explanation
Indices: 22524175--22524227 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
22524165 ATGGTTGCCC
*
22524175 TCATCATTGTCA
1 TCATCATTATCA
22524187 TCATCATTATCA
1 TCATCATTATCA
* * *
22524199 TTATCATCAACA
1 TCATCATTATCA
*
22524211 TCATCGTTATCA
1 TCATCATTATCA
22524223 TCATC
1 TCATC
22524228 TTCTACTTCA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.40
Consensus pattern (12 bp):
TCATCATTATCA
Found at i:22524200 original size:18 final size:18
Alignment explanation
Indices: 22524175--22524227 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
22524165 ATGGTTGCCC
*
22524175 TCATCATTGTCATCATCA
1 TCATCATTATCATCATCA
* *
22524193 TTATCATTATCATCAACA
1 TCATCATTATCATCATCA
*
22524211 TCATCGTTATCATCATC
1 TCATCATTATCATCATC
22524228 TTCTACTTCA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.40
Consensus pattern (18 bp):
TCATCATTATCATCATCA
Found at i:22526032 original size:6 final size:6
Alignment explanation
Indices: 22526021--22526047 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
22526011 AATTTAGCCT
22526021 TTGGCA TTGGCA TTGGCA TTGGCA TTG
1 TTGGCA TTGGCA TTGGCA TTGGCA TTG
22526048 CTCAAAGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (6 bp):
TTGGCA
Found at i:22532944 original size:22 final size:22
Alignment explanation
Indices: 22532914--22532965 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
22532904 AGGTGTTAAA
*
22532914 ACAACGAAAGAGTTGTCTGAGT
1 ACAACGAAAAAGTTGTCTGAGT
*
22532936 ACAATGAAAAAGTTGTCTGAGT
1 ACAACGAAAAAGTTGTCTGAGT
22532958 ACAACGAA
1 ACAACGAA
22532966 CCCAAATCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.21
Consensus pattern (22 bp):
ACAACGAAAAAGTTGTCTGAGT
Found at i:22535067 original size:23 final size:25
Alignment explanation
Indices: 22535041--22535087 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
22535031 TTTAAAATTT
*
22535041 AAAA-TTATTAAA-AACTTATAAAC
1 AAAATTTATAAAATAACTTATAAAC
*
22535064 AAAATTTATAAAATAAGTTATAAA
1 AAAATTTATAAAATAACTTATAAA
22535088 ATTTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 7 0.35
25 9 0.45
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (25 bp):
AAAATTTATAAAATAACTTATAAAC
Found at i:22542900 original size:17 final size:18
Alignment explanation
Indices: 22542878--22542911 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22542868 GAAATGAGTT
22542878 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
22542895 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
22542912 AAAATAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:22555921 original size:23 final size:23
Alignment explanation
Indices: 22555892--22555958 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
22555882 TAAATGACAT
22555892 TTTTATTAAATAATAATTTAATA
1 TTTTATTAAATAATAATTTAATA
*
22555915 TTTTATTTAA-AATAA--TAATA
1 TTTTATTAAATAATAATTTAATA
* *
22555935 TTTTAATAAGTAAT-ATTATAATA
1 TTTTATTAAATAATAATT-TAATA
22555958 T
1 T
22555959 ATGTAAAAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
20 13 0.36
21 3 0.08
22 5 0.14
23 15 0.42
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (23 bp):
TTTTATTAAATAATAATTTAATA
Found at i:22562230 original size:18 final size:17
Alignment explanation
Indices: 22562207--22562252 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
22562197 GTAGTGATTC
*
22562207 AATTCGGTTAATTCGGGA
1 AATTCGGTTAATTC-AGA
*
22562225 AATTCGGGTTAATTCAGT
1 AATTC-GGTTAATTCAGA
22562243 AATTCGGTTA
1 AATTCGGTTA
22562253 TTTTTAACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 5 0.20
18 11 0.44
19 9 0.36
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (17 bp):
AATTCGGTTAATTCAGA
Found at i:22566272 original size:44 final size:45
Alignment explanation
Indices: 22566224--22566315 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
22566214 GTCTTACCCG
* * * *
22566224 TTTTGGTT-TAATGCCATAGTATCATTCAA-CTATGTTCTTTTCTT
1 TTTTGATTATAATGACATAGTATCATTCAATC-ATGGTCTTTCCTT
*
22566268 TTTTGATTATAATGACATAGTATCTTTCAATCATGGTCTTTCCTT
1 TTTTGATTATAATGACATAGTATCATTCAATCATGGTCTTTCCTT
22566313 TTT
1 TTT
22566316 CTCAAACAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
44 7 0.17
45 33 0.80
46 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (45 bp):
TTTTGATTATAATGACATAGTATCATTCAATCATGGTCTTTCCTT
Found at i:22575425 original size:4 final size:4
Alignment explanation
Indices: 22575416--22575446 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
22575406 CATCACCTTG
22575416 TATT TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TAT
22575447 AAAACTACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:22575636 original size:23 final size:22
Alignment explanation
Indices: 22575602--22575646 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
22575592 TAATATAAAA
22575602 TTTAAATCTATTATTATATTTT
1 TTTAAATCTATTATTATATTTT
*
22575624 TTTAAATTTTATTATTATATTTT
1 TTTAAA-TCTATTATTATATTTT
22575647 AAAATTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTAAATCTATTATTATATTTT
Found at i:22575637 original size:20 final size:20
Alignment explanation
Indices: 22575602--22575673 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
22575592 TAATATAAAA
22575602 TTTAAATCTATTATTATATTTT
1 TTTAAAT-T-TTATTATATTTT
*
22575624 TTTAAATTTTATTAT-TATAT
1 TTTAAATTTTATTATAT-TTT
*
22575644 TTTAAA-ATTATT-TATTTAT
1 TTTAAATTTTATTATATTT-T
22575663 TTTAATATTTT
1 TTTAA-ATTTT
22575674 TTTTGAATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
18 2 0.05
19 13 0.32
20 16 0.39
21 3 0.07
22 7 0.17
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTAAATTTTATTATATTTT
Found at i:22575657 original size:23 final size:22
Alignment explanation
Indices: 22575610--22575673 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 22
22575600 AATTTAAATC
*
22575610 TATTATTATATTTTTTTAAATTT
1 TATTATTATA-TTTTTAAAATTT
*
22575633 TATTATTATA-TTTTAAAATTA
1 TATTATTATATTTTTAAAATTT
*
22575654 T-TTATT-TA-TTTTAATATTT
1 TATTATTATATTTTTAAAATTT
22575673 T
1 T
22575674 TTTTGAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 12 0.32
20 5 0.14
21 10 0.27
23 10 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTATTATATTTTTAAAATTT
Found at i:22575734 original size:51 final size:51
Alignment explanation
Indices: 22575679--22575789 Score: 145
Period size: 51 Copynumber: 2.2 Consensus size: 51
22575669 ATTTTTTTTG
* * *
22575679 AATTTTTTAGAATTAGGA-TCAAATTGAGATCATTTGTAAATTTTGAGGGTT-
1 AATTTTTTAAAATTAGGACT-AAATTGAGATAATTTGTAAA-TTTAAGGGTTA
* *
22575730 AATTTTTTAAAATTATGACTAAATTGATATAATTTGTAAATTTAAGGGTTA
1 AATTTTTTAAAATTAGGACTAAATTGAGATAATTTGTAAATTTAAGGGTTA
22575781 AATTTTTTA
1 AATTTTTTA
22575790 TTATACCAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
50 9 0.17
51 43 0.81
52 1 0.02
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (51 bp):
AATTTTTTAAAATTAGGACTAAATTGAGATAATTTGTAAATTTAAGGGTTA
Found at i:22583756 original size:8 final size:8
Alignment explanation
Indices: 22583727--22583755 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
22583717 CATCTTAAGA
22583727 TTAAAATT
1 TTAAAATT
22583735 TTAAAATT
1 TTAAAATT
22583743 TTAAAA-T
1 TTAAAATT
22583750 TTAAAA
1 TTAAAA
22583756 AGTATAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
TTAAAATT
Found at i:22586854 original size:16 final size:16
Alignment explanation
Indices: 22586833--22586868 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
22586823 TTTGGTTCGC
22586833 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22586849 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22586865 TGTA
1 TGTA
22586869 ATAGCTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:22586933 original size:44 final size:45
Alignment explanation
Indices: 22586849--22586939 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
22586839 GGATTAGAGG
* * *
22586849 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
22586894 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
22586938 TG
1 TG
22586940 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:22597086 original size:18 final size:17
Alignment explanation
Indices: 22597051--22597086 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
22597041 CAATTTGGGT
*
22597051 CATGTGGGCCATACGGG
1 CATGTGGGCCACACGGG
22597068 CATGTGGGCCCACACGGG
1 CATGTGGG-CCACACGGG
22597086 C
1 C
22597087 GAACACCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.31, G:0.39, T:0.14
Consensus pattern (17 bp):
CATGTGGGCCACACGGG
Found at i:22597986 original size:18 final size:18
Alignment explanation
Indices: 22597963--22597997 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22597953 ATAAGAAAAT
22597963 GATTTG-AAATTGAATAAC
1 GATTTGTAAA-TGAATAAC
22597981 GATTTGTAAATGAATAA
1 GATTTGTAAATGAATAA
22597998 TATTTTAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.46, C:0.03, G:0.17, T:0.34
Consensus pattern (18 bp):
GATTTGTAAATGAATAAC
Found at i:22600001 original size:507 final size:507
Alignment explanation
Indices: 22599075--22601056 Score: 3475
Period size: 507 Copynumber: 3.9 Consensus size: 507
22599065 ATATCCAATA
*
22599075 AGGATATGGAGGTAGTCATTATCGGAGAACATCGAAACTACTTATCTAATGTGATCTCTGCACTG
1 AGGATATGGAGGTAGTCATGATCGGAGAACATCGAAACTACTTATCTAATGTGATCTCTGCACTG
*
22599140 GTGGCGGAGAAGTTGGTTCGTAAGGGATGTGAGGCATTCTTGGCATATGTAAGTGTTTCGGATTC
66 GTGGCGGAGAAGTTGGTTCGTAAGGGATGTGAGGCATTCTTGGCCTATGTAAGTGTTTCGGATTC
* * *
22599205 TAGGGACTCTATAGTTAAGGATATCAGAACAAAAAAGGATGTTCCAGACATTTTTCCTGATGAGC
131 TAGGGACTCTACAGTTAAGGATATCAAAACAGAAAAGGATGTTCCAGACATTTTTCCTGATGAGC
*
22599270 TATCGGGTTTACCTCCGAATCGTGAAGCGGAGTTTGGGATAGAGCTCATTCCTGGTACAGCTCCG
196 TATCGGGTTTACCTCCGAATCGTGAAGTGGAGTTTGGGATAGAGCTCATTCCTGGTACAGCTCCG
22599335 GTGTCCATCGCTTCCTATAGAATGGCACCGAAGGAGCTTGTGGAGTTTAAAGCTCAGATTCAAGA
261 GTGTCCATCGCTTCCTATAGAATGGCACCGAAGGAGCTTGTGGAGTTTAAAGCTCAGATTCAAGA
* *
22599400 GCTTTTAGATCGTGGGTTCATCTACCCTAGTGTATCTCCGTGAGGAGCACCAGTTCTATTTGTAA
326 GCTTTTAGATCGTGGGTTCATCTACCCTAGTGTATCTCCGTGGGGAGCACCAGTTCTGTTTGTAA
22599465 AGAAAAAGGATGGATACATGCGTATGTGCATCGACTACAAGCAGCTGAATAAATTAACCATTAAG
391 AGAAAAAGGATGGATACATGCGTATGTGCATCGACTACAAGCAGCTGAATAAATTAACCATTAAG
22599530 AATAAGTAATGAAATCTTTCTGCCTTGGTCGAAAAGGCGAAAATCACCGAGG
456 AATAAGTAATGAAATCTTTCTGCCTTGGTCGAAAAGGCGAAAATCACCGAGG
22599582 AGGATATGGAGGTAGTCATGATCGGAGAACATCGAAACTACTTATCTAATGTGATCTCTGCACTG
1 AGGATATGGAGGTAGTCATGATCGGAGAACATCGAAACTACTTATCTAATGTGATCTCTGCACTG
* *
22599647 GTGGCGGAGAAGTTGGTTCGTAAGGGATGTGAGCCATTCTTGGCCTATATAAGTGTTTCGGATTC
66 GTGGCGGAGAAGTTGGTTCGTAAGGGATGTGAGGCATTCTTGGCCTATGTAAGTGTTTCGGATTC
* *
22599712 TAGGGACTCTACAGTTAAGGATATCAGAACAGAAAATGATGTTCCAGACATTTTTCCTGATGAGC
131 TAGGGACTCTACAGTTAAGGATATCAAAACAGAAAAGGATGTTCCAGACATTTTTCCTGATGAGC
*
22599777 TATCGGGTTTACCTCCAAATCGTGAAGTGGAGTTTGGGATAGAGCTCATTCCTGGTACAGCTCCG
196 TATCGGGTTTACCTCCGAATCGTGAAGTGGAGTTTGGGATAGAGCTCATTCCTGGTACAGCTCCG
*
22599842 GTGTCCATCGCTTCCTATAGAATTGCACCGAAGGAGCTTGTGGAGTTTAAAGCTCAGATTCAAGA
261 GTGTCCATCGCTTCCTATAGAATGGCACCGAAGGAGCTTGTGGAGTTTAAAGCTCAGATTCAAGA
22599907 GCTTTTAGATCGTGGGTTCATCTACCCTAGTGTATCTCCGTGGGGAGCACCAGTTCTGTTTGTAA
326 GCTTTTAGATCGTGGGTTCATCTACCCTAGTGTATCTCCGTGGGGAGCACCAGTTCTGTTTGTAA
22599972 AGAAAAAGGATGGATACATGCGTATGTGCATCGACTACAAGCAGCTGAATAAATTAACCATTAAG
391 AGAAAAAGGATGGATACATGCGTATGTGCATCGACTACAAGCAGCTGAATAAATTAACCATTAAG
* *
22600037 AATAAGTAATGAAATCTTTATGCCTTGGTCGAAAAGGCAAAAATCACCGAGG
456 AATAAGTAATGAAATCTTTCTGCCTTGGTCGAAAAGGCGAAAATCACCGAGG
22600089 AGGATATGGAGGTAGTCATGATCGGAGAACATCGAAACTACTTATCTAATGTGATCTCTGCACTG
1 AGGATATGGAGGTAGTCATGATCGGAGAACATCGAAACTACTTATCTAATGTGATCTCTGCACTG
22600154 GTGGCGGAGAAGTTGGTTCGTAAGGGATGTGAGGCATTCTTGGCCTATGTAAGTGTTTCGGATTC
66 GTGGCGGAGAAGTTGGTTCGTAAGGGATGTGAGGCATTCTTGGCCTATGTAAGTGTTTCGGATTC
22600219 TAGGGACTCTACAGTTAAGGATATCAAAACAGAAAAGGATGTTCCAGACATTTTTCCTGATGAGC
131 TAGGGACTCTACAGTTAAGGATATCAAAACAGAAAAGGATGTTCCAGACATTTTTCCTGATGAGC
22600284 TATCGGGTTTACCTCCGAATCGTGAAGTGGAGTTTGGGATAGAGCTCATTCCTGGTACAGCTCCG
196 TATCGGGTTTACCTCCGAATCGTGAAGTGGAGTTTGGGATAGAGCTCATTCCTGGTACAGCTCCG
*
22600349 GTGTCCATCGCTTCCTATAGAATGGCACCGAAGGAGCTTGTGGAGTTTAAAGCTCAGCTTCAAGA
261 GTGTCCATCGCTTCCTATAGAATGGCACCGAAGGAGCTTGTGGAGTTTAAAGCTCAGATTCAAGA
*
22600414 GCTTTTAGATCGGGGGTTCATCTACCCTAGTGTATCTCCGTGGGGAGCACCAGTTCTGTTTGTAA
326 GCTTTTAGATCGTGGGTTCATCTACCCTAGTGTATCTCCGTGGGGAGCACCAGTTCTGTTTGTAA
22600479 AGAAAAAGGATGGATACATGCGTATGTGCATCGACTACAAGCAGCTGAATAAATTAACCATTAAG
391 AGAAAAAGGATGGATACATGCGTATGTGCATCGACTACAAGCAGCTGAATAAATTAACCATTAAG
* * *
22600544 AACAAGTAATGAAATCTTTCTGCCTTGGTCGAAATGGCGAAAATCACTGAGG
456 AATAAGTAATGAAATCTTTCTGCCTTGGTCGAAAAGGCGAAAATCACCGAGG
* * *
22600596 AGGATATGGAGGTAGTCATGATCGGAGAACTTC-AGAACTACTTATCTAATGTGATCTCTACATT
1 AGGATATGGAGGTAGTCATGATCGGAGAACATCGA-AACTACTTATCTAATGTGATCTCTGCACT
** *
22600660 GGTGGCGGAGAAGTTAATTCATAAGGGATGTGAGGCATTCTTGGCCTATGTAAGTGTTTCGGATT
65 GGTGGCGGAGAAGTTGGTTCGTAAGGGATGTGAGGCATTCTTGGCCTATGTAAGTGTTTCGGATT
* * * * * *
22600725 CTAGGGACTCTACAGTTAAGGATATCAAAACGGTAAATGATGTTCC-GAACGTCTTTCCTAATGA
130 CTAGGGACTCTACAGTTAAGGATATCAAAACAGAAAAGGATGTTCCAG-ACATTTTTCCTGATGA
* * *
22600789 GCTATCGGGTTTACCTCTGAATCGTGAAGTGGAGTTTGGGATAGAGCTCTTTCCTAGTACAGCTC
194 GCTATCGGGTTTACCTCCGAATCGTGAAGTGGAGTTTGGGATAGAGCTCATTCCTGGTACAGCTC
* * * *
22600854 CGGTGTCCATCACTCCCTATAGAATGGCACCGAAGGAGCTTGAGGAGCTT-AAGACTCAGATTCA
259 CGGTGTCCATCGCTTCCTATAGAATGGCACCGAAGGAGCTTGTGGAGTTTAAAG-CTCAGATTCA
* * * *
22600918 AGAGCTTTTAGATCGTGGGTTCATCTGCCCTAGTGTGTCTCCGTGGGAAGCACCGGTTCTGTTTG
323 AGAGCTTTTAGATCGTGGGTTCATCTACCCTAGTGTATCTCCGTGGGGAGCACCAGTTCTGTTTG
* * * * *
22600983 TAAAGAAAAAAGATGGATCCATGCGTATGTGCATCAACTACAGGCAGCTAAATAAATTAACCATT
388 TAAAGAAAAAGGATGGATACATGCGTATGTGCATCGACTACAAGCAGCTGAATAAATTAACCATT
22601048 AAGAATAAG
453 AAGAATAAG
22601057 GGCCCCTACC
Statistics
Matches: 1414, Mismatches: 58, Indels: 6
0.96 0.04 0.00
Matches are distributed among these distances:
506 5 0.00
507 1409 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (507 bp):
AGGATATGGAGGTAGTCATGATCGGAGAACATCGAAACTACTTATCTAATGTGATCTCTGCACTG
GTGGCGGAGAAGTTGGTTCGTAAGGGATGTGAGGCATTCTTGGCCTATGTAAGTGTTTCGGATTC
TAGGGACTCTACAGTTAAGGATATCAAAACAGAAAAGGATGTTCCAGACATTTTTCCTGATGAGC
TATCGGGTTTACCTCCGAATCGTGAAGTGGAGTTTGGGATAGAGCTCATTCCTGGTACAGCTCCG
GTGTCCATCGCTTCCTATAGAATGGCACCGAAGGAGCTTGTGGAGTTTAAAGCTCAGATTCAAGA
GCTTTTAGATCGTGGGTTCATCTACCCTAGTGTATCTCCGTGGGGAGCACCAGTTCTGTTTGTAA
AGAAAAAGGATGGATACATGCGTATGTGCATCGACTACAAGCAGCTGAATAAATTAACCATTAAG
AATAAGTAATGAAATCTTTCTGCCTTGGTCGAAAAGGCGAAAATCACCGAGG
Found at i:22602527 original size:19 final size:20
Alignment explanation
Indices: 22602503--22602548 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
22602493 CATCCAAACA
22602503 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
22602522 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
22602542 CCAGAAA
1 CCAGAAA
22602549 TTATTTTTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:22603514 original size:16 final size:14
Alignment explanation
Indices: 22603479--22603512 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
22603469 CTTTTCTATG
*
22603479 TTTTTAATTAATGT
1 TTTTTAATTAATAT
22603493 TTTTTAATTAATAT
1 TTTTTAATTAATAT
22603507 ATTTTT
1 -TTTTT
22603513 TATTTTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
TTTTTAATTAATAT
Found at i:22606438 original size:47 final size:48
Alignment explanation
Indices: 22606338--22606471 Score: 173
Period size: 47 Copynumber: 2.8 Consensus size: 48
22606328 AGGCTAATTG
* * *
22606338 TTGTGTAGGTTTAA-CTTAACAGGTGACCAGGCACTATTATTCATTAT
1 TTGTGTAGGTTTAACCCTAACAGGTAACCAGACACTATTATTCATTAT
* * *
22606385 TCGTGTAGGTTTAACCCTGACAGGTAACCAAACACTATTATTCATT-T
1 TTGTGTAGGTTTAACCCTAACAGGTAACCAGACACTATTATTCATTAT
* **
22606432 TTGTGTAGGTTTAACCCAAATGGGTAACCAGACACTATTA
1 TTGTGTAGGTTTAACCCTAACAGGTAACCAGACACTATTA
22606472 CTTTCACCTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 48 0.65
48 26 0.35
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (48 bp):
TTGTGTAGGTTTAACCCTAACAGGTAACCAGACACTATTATTCATTAT
Found at i:22608390 original size:16 final size:16
Alignment explanation
Indices: 22608369--22608399 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
22608359 GGATCTATAG
22608369 GAAGAAGAGAAATGTA
1 GAAGAAGAGAAATGTA
22608385 GAAGAAGAGAAATGT
1 GAAGAAGAGAAATGT
22608400 GAAAGGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.32, T:0.13
Consensus pattern (16 bp):
GAAGAAGAGAAATGTA
Found at i:22613676 original size:54 final size:54
Alignment explanation
Indices: 22613559--22614024 Score: 289
Period size: 54 Copynumber: 8.8 Consensus size: 54
22613549 AATTTGCTAA
* * * * * *
22613559 TTACAAGATTTTTCTAGTCTTG-TGACTTGTCGA-TTAAGATTGCAACCTTATAC
1 TTACAAGATTTTTCGAATCTTGCAG-TTTGTCGATTTAAGATCGTAACCTTATAC
*** * *
22613612 TTATTGGATTTTTCGAATCTTGCAGTTTGTCGATTTAAGATCGTAATCTTATGC
1 TTACAAGATTTTTCGAATCTTGCAGTTTGTCGATTTAAGATCGTAACCTTATAC
* *
22613666 TTAAAAGA-TTTTCTGAATCTTGCAGCTTGTCGATTTAAGATCG-AAGCCTTATAC
1 TTACAAGATTTTTC-GAATCTTGCAGTTTGTCGATTTAAGATCGTAA-CCTTATAC
* * * * * * * * * * *
22613720 TTACAAGATTTTTTGTATCTTACGGCTCGCCAATTTAATATTGTAGCCTTATAC
1 TTACAAGATTTTTCGAATCTTGCAGTTTGTCGATTTAAGATCGTAACCTTATAC
* * * * * * *
22613774 TCATAAGATTTTTCGAATCTTGCAG-CTCTCTGATTTAAGATTGCAGCCTTATAC
1 TTACAAGATTTTTCGAATCTTGCAGTTTGTC-GATTTAAGATCGTAACCTTATAC
** *
22613828 TTACAAGA-TTTTCTGAATCTTGTGGTTTG-C-----AATATCGTAACCTTATAC
1 TTACAAGATTTTTC-GAATCTTGCAGTTTGTCGATTTAAGATCGTAACCTTATAC
* * **
22613876 TTACAAGATTTTTCGTATCTTGCGACTTT-TCGATTTAAGATCACAACCTTATAC
1 TTACAAGATTTTTCGAATCTTGC-AGTTTGTCGATTTAAGATCGTAACCTTATAC
* * * * * * ** *
22613930 TTACAAGA-TTCTCAGAATCTTGCAGCTCGTTGATGTAAAATCCCAAACTTATAC
1 TTACAAGATTTTTC-GAATCTTGCAGTTTGTCGATTTAAGATCGTAACCTTATAC
* * * *
22613984 TTACAAGA-TTTCCAAAATCTTGTAG-TTGCCGATTTAAGATC
1 TTACAAGATTTTTC-GAATCTTGCAGTTTGTCGATTTAAGATC
22614025 ACAATATTCT
Statistics
Matches: 317, Mismatches: 77, Indels: 38
0.73 0.18 0.09
Matches are distributed among these distances:
48 29 0.09
49 9 0.03
53 54 0.17
54 219 0.69
55 6 0.02
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (54 bp):
TTACAAGATTTTTCGAATCTTGCAGTTTGTCGATTTAAGATCGTAACCTTATAC
Found at i:22614281 original size:23 final size:23
Alignment explanation
Indices: 22614254--22614297 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
22614244 GAAATTTCAT
22614254 TGTACAGCTCGCCGAATTTTTGA
1 TGTACAGCTCGCCGAATTTTTGA
**
22614277 TGTACAGCTCGCTTAATTTTT
1 TGTACAGCTCGCCGAATTTTT
22614298 CGATTTATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (23 bp):
TGTACAGCTCGCCGAATTTTTGA
Found at i:22615530 original size:21 final size:20
Alignment explanation
Indices: 22615502--22615543 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
22615492 AATTTTTTTT
*
22615502 ATTTTTA-TATGATTTTTAAA
1 ATTTTTATTAT-ATTTTAAAA
22615522 ATTTATTATTATATTTTAAAA
1 ATTT-TTATTATATTTTAAAA
22615543 A
1 A
22615544 GATTTATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 12 0.63
22 3 0.16
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTTTATTATATTTTAAAA
Found at i:22620309 original size:11 final size:11
Alignment explanation
Indices: 22620302--22620343 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
22620292 GAAAAAAAAC
*
22620302 CAAGAAAATAA
1 CAAGAAAACAA
22620313 CAAGAAAACAA
1 CAAGAAAACAA
* *
22620324 TAATAAAA-AA
1 CAAGAAAACAA
22620334 CAAGAAAACA
1 CAAGAAAACA
22620344 GTAGAAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.74, C:0.12, G:0.07, T:0.07
Consensus pattern (11 bp):
CAAGAAAACAA
Found at i:22620353 original size:20 final size:21
Alignment explanation
Indices: 22620303--22620356 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
22620293 AAAAAAAACC
22620303 AAGAAAATAACAAGAAAACAAT
1 AAGAAAA-AACAAGAAAACAAT
* *
22620325 AATAAAAAACAAGAAAACAGT
1 AAGAAAAAACAAGAAAACAAT
22620346 -AGAAAAAACAA
1 AAGAAAAAACAA
22620357 ATTTTTTTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 10 0.34
21 13 0.45
22 6 0.21
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.07
Consensus pattern (21 bp):
AAGAAAAAACAAGAAAACAAT
Found at i:22632111 original size:43 final size:43
Alignment explanation
Indices: 22632002--22632131 Score: 151
Period size: 43 Copynumber: 3.0 Consensus size: 43
22631992 AAATCGTACA
* *
22632002 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
** *
22632045 ATGCC-ACTGTAGCAGATAG-GGTCTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAACACATA-TCG
22632088 ATGCCAACGTCCCAGACGTGGTCTTACACG-ATAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTA-AACACATATCG
22632131 A
1 A
22632132 AAATCCTATG
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
42 5 0.07
43 63 0.88
44 4 0.06
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
Found at i:22638399 original size:28 final size:28
Alignment explanation
Indices: 22638362--22638422 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
22638352 GAATTTAGAA
*
22638362 GAATGGCGTTGAATGCTATTTTGAATTT
1 GAATGACGTTGAATGCTATTTTGAATTT
22638390 GAATGACGTTGAATGCTATTTTGAATTT
1 GAATGACGTTGAATGCTATTTTGAATTT
22638418 GAATG
1 GAATG
22638423 TTATTTTCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.41
Consensus pattern (28 bp):
GAATGACGTTGAATGCTATTTTGAATTT
Found at i:22644587 original size:9 final size:9
Alignment explanation
Indices: 22644569--22644623 Score: 76
Period size: 9 Copynumber: 6.2 Consensus size: 9
22644559 TTGGGTAATT
22644569 TTCGGGTAA
1 TTCGGGTAA
*
22644578 TTCGGTTAA
1 TTCGGGTAA
*
22644587 TTCGGTTAA
1 TTCGGGTAA
*
22644596 TTCGGTTAA
1 TTCGGGTAA
22644605 -TCGGGTAA
1 TTCGGGTAA
22644613 TTCGGGTAA
1 TTCGGGTAA
22644622 TT
1 TT
22644624 TTTAACTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
8 7 0.16
9 36 0.84
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (9 bp):
TTCGGGTAA
Found at i:22644596 original size:18 final size:18
Alignment explanation
Indices: 22644569--22644623 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
22644559 TTGGGTAATT
22644569 TTCGGGTAATTCGGTTAA
1 TTCGGGTAATTCGGTTAA
*
22644587 TTCGGTTAATTCGGTTAA
1 TTCGGGTAATTCGGTTAA
*
22644605 -TCGGGTAATTCGGGTAA
1 TTCGGGTAATTCGGTTAA
22644622 TT
1 TT
22644624 TTTAACTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 15 0.45
18 18 0.55
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (18 bp):
TTCGGGTAATTCGGTTAA
Found at i:22646783 original size:20 final size:18
Alignment explanation
Indices: 22646736--22646792 Score: 69
Period size: 20 Copynumber: 3.0 Consensus size: 18
22646726 GACGACAAGG
*
22646736 ATGAGAAATGGATATGAT
1 ATGAGAAATGGATATGAA
*
22646754 ATGGGAAATGGAATATGAA
1 ATGAGAAATGG-ATATGAA
22646773 ATGATGAAATGGGATATGAA
1 ATGA-GAAAT-GGATATGAA
22646793 TATTGAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 10 0.30
19 9 0.27
20 12 0.36
21 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.30, T:0.25
Consensus pattern (18 bp):
ATGAGAAATGGATATGAA
Found at i:22646784 original size:27 final size:27
Alignment explanation
Indices: 22646749--22646803 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
22646739 AGAAATGGAT
*
22646749 ATGATATGGGAAATGGAATA-TGAAATG
1 ATGAAATGGGAAAT-GAATATTGAAATG
*
22646776 ATGAAATGGGATATGAATATTGAAATG
1 ATGAAATGGGAAATGAATATTGAAATG
22646803 A
1 A
22646804 ATTCATGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (27 bp):
ATGAAATGGGAAATGAATATTGAAATG
Found at i:22646801 original size:19 final size:20
Alignment explanation
Indices: 22646740--22646802 Score: 71
Period size: 19 Copynumber: 3.3 Consensus size: 20
22646730 ACAAGGATGA
*
22646740 GAAAT-GGATATG-ATATGG
1 GAAATGGGATATGAATATGT
*
22646758 GAAATGGAATATGAA-ATGAT
1 GAAATGGGATATGAATATG-T
22646778 GAAATGGGATATGAATAT-T
1 GAAATGGGATATGAATATGT
22646797 GAAATG
1 GAAATG
22646803 AATTCATGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.13
19 16 0.42
20 15 0.39
21 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.29, T:0.27
Consensus pattern (20 bp):
GAAATGGGATATGAATATGT
Found at i:22660434 original size:3 final size:3
Alignment explanation
Indices: 22660428--22660488 Score: 54
Period size: 3 Copynumber: 20.3 Consensus size: 3
22660418 AGCTGCAATT
* * *
22660428 GCA GCA GCA GCA GCA GCA GCA GCA G-A TGCA GCC CCA GTTA -CA GCA
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA -GCA GCA GCA G-CA GCA GCA
*
22660473 GCA GCA ACA GCA GCA G
1 GCA GCA GCA GCA GCA G
22660489 AATCCACAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
2 2 0.04
3 42 0.91
4 2 0.04
ACGTcount: A:0.33, C:0.33, G:0.30, T:0.05
Consensus pattern (3 bp):
GCA
Found at i:22660564 original size:30 final size:30
Alignment explanation
Indices: 22660528--22660594 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
22660518 GCACTTGCAG
* *
22660528 CAGCAGCAGCAACTTCCTCAGCTACAACAA
1 CAGCAGCAGCAACTACCACAGCTACAACAA
* * *
22660558 CAGCAGCAGCAGCTACCACAGCTGCAACAG
1 CAGCAGCAGCAACTACCACAGCTACAACAA
22660588 CAGCAGC
1 CAGCAGC
22660595 TTTCCCAGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.37, G:0.19, T:0.09
Consensus pattern (30 bp):
CAGCAGCAGCAACTACCACAGCTACAACAA
Found at i:22660585 original size:27 final size:27
Alignment explanation
Indices: 22660480--22660594 Score: 94
Period size: 27 Copynumber: 4.3 Consensus size: 27
22660470 GCAGCAGCAA
**
22660480 CAGCAGCAGAATCCACAGCTGCAACA-
1 CAGCAGCAGCTTCCACAGCTGCAACAG
* *
22660506 -A-CAGCAGCTTCCGCA-CTTGCAGCAG
1 CAGCAGCAGCTTCCACAGC-TGCAACAG
* * *
22660531 CAGCAGCAACTTCCTCAGCTACAACAACAG
1 CAGCAGCAGCTTCCACAGCT---GCAACAG
*
22660561 CAGCAGCAGCTACCACAGCTGCAACAG
1 CAGCAGCAGCTTCCACAGCTGCAACAG
22660588 CAGCAGC
1 CAGCAGC
22660595 TTTCCCAGCT
Statistics
Matches: 69, Mismatches: 12, Indels: 15
0.72 0.12 0.16
Matches are distributed among these distances:
23 1 0.01
24 17 0.25
25 1 0.01
26 1 0.01
27 26 0.38
28 1 0.01
30 22 0.32
ACGTcount: A:0.33, C:0.37, G:0.20, T:0.10
Consensus pattern (27 bp):
CAGCAGCAGCTTCCACAGCTGCAACAG
Found at i:22660593 original size:24 final size:24
Alignment explanation
Indices: 22660561--22660613 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
22660551 ACAACAACAG
22660561 CAGCAGCAGC-TACCACAGCTGCAA
1 CAGCAGCAGCTTACC-CAGCTGCAA
* *
22660585 CAGCAGCAGCTTTCCCAGCTGCAG
1 CAGCAGCAGCTTACCCAGCTGCAA
22660609 CAGCA
1 CAGCA
22660614 ACAACAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.28, C:0.38, G:0.23, T:0.11
Consensus pattern (24 bp):
CAGCAGCAGCTTACCCAGCTGCAA
Found at i:22660611 original size:3 final size:3
Alignment explanation
Indices: 22660600--22660643 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
22660590 GCAGCTTTCC
* * * *
22660600 CAG CTG CAG CAG CAA CAA CAA CAG CAG CAG CAG CAG CAG CAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
22660644 ACTGCAGCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.39, C:0.34, G:0.25, T:0.02
Consensus pattern (3 bp):
CAG
Found at i:22660634 original size:21 final size:21
Alignment explanation
Indices: 22660546--22660634 Score: 63
Period size: 21 Copynumber: 4.2 Consensus size: 21
22660536 GCAACTTCCT
*
22660546 CAGCTACAACAACAGCAGCAG
1 CAGCAACAACAACAGCAGCAG
* * * * *
22660567 CAGCTACCACAGCTGCAACAG
1 CAGCAACAACAACAGCAGCAG
* ** * *
22660588 CAGCAGCTTTC-CCAGCTGCAG
1 CAGCAAC-AACAACAGCAGCAG
22660609 CAGCAACAACAACAGCAGCAG
1 CAGCAACAACAACAGCAGCAG
22660630 CAGCA
1 CAGCA
22660635 GCAGCAGCAA
Statistics
Matches: 49, Mismatches: 17, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
20 1 0.02
21 47 0.96
22 1 0.02
ACGTcount: A:0.36, C:0.36, G:0.20, T:0.08
Consensus pattern (21 bp):
CAGCAACAACAACAGCAGCAG
Found at i:22669499 original size:2 final size:2
Alignment explanation
Indices: 22669492--22669522 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
22669482 TTTGTAAGCA
22669492 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
22669523 TATAACTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:22671272 original size:21 final size:21
Alignment explanation
Indices: 22671222--22671273 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
22671212 AATAATAATG
*
22671222 TCGATTCAAACAACAAAAGAA
1 TCGATTCAAACAACAAAACAA
* *
22671243 TCGAGTCAATCAACAAAACAA
1 TCGATTCAAACAACAAAACAA
*
22671264 TCTATTCAAA
1 TCGATTCAAA
22671274 GTGGCTACAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.52, C:0.21, G:0.08, T:0.19
Consensus pattern (21 bp):
TCGATTCAAACAACAAAACAA
Found at i:22671860 original size:15 final size:15
Alignment explanation
Indices: 22671808--22671865 Score: 75
Period size: 16 Copynumber: 3.8 Consensus size: 15
22671798 CATCTTGGCC
22671808 AGCTCGCATTTTGATG
1 AGCTCGCATTTTG-TG
22671824 AGCTCGCATTTTGGTG
1 AGCTCGCATTTT-GTG
22671840 AGCTCGCACTTTTGT-
1 AGCTCGCA-TTTTGTG
22671855 AGCTCGC-TTTT
1 AGCTCGCATTTT
22671866 CATTCAACTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.10
15 7 0.17
16 24 0.60
17 5 0.12
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.40
Consensus pattern (15 bp):
AGCTCGCATTTTGTG
Found at i:22681678 original size:18 final size:18
Alignment explanation
Indices: 22681635--22681680 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
22681625 CAAAGTCACG
* *
22681635 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTAGC
22681653 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTAGC
22681671 ATCAATATCG
1 ATCAATATCG
22681681 ATATCATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (18 bp):
ATCAATATCGTCACTAGC
Found at i:22682778 original size:24 final size:24
Alignment explanation
Indices: 22682732--22682802 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 24
22682722 ATCTATGTAG
22682732 ATTTTATATATTTTATTATAAAT-CAT
1 ATTTTATATA-TTTA-TA-AAATACAT
*
22682758 ATTTTATATATTTATACAAATATAT
1 ATTTTATATATTTATA-AAATACAT
22682783 ATTTTATAT-TTTATAAAATA
1 ATTTTATATATTTATAAAATA
22682803 GGCTGCGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 5 0.12
24 12 0.29
25 15 0.36
26 10 0.24
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (24 bp):
ATTTTATATATTTATAAAATACAT
Found at i:22682790 original size:23 final size:23
Alignment explanation
Indices: 22682732--22682802 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 23
22682722 ATCTATGTAG
22682732 ATTTTATATATTTTATTATAAATCAT
1 ATTTTATATATTTTA-TA-AAAT-AT
22682758 ATTTTATATA-TTTATACAAATAT
1 ATTTTATATATTTTATA-AAATAT
22682781 ATATTT-TATATTTTATAAAATA
1 AT-TTTATATATTTTATAAAATA
22682803 GGCTGCGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
23 13 0.31
24 15 0.36
25 4 0.10
26 10 0.24
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTTTATATATTTTATAAAATAT
Found at i:22684940 original size:42 final size:42
Alignment explanation
Indices: 22684865--22685225 Score: 319
Period size: 42 Copynumber: 8.8 Consensus size: 42
22684855 TTTTAGAAAT
22684865 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTT-CTCAC
1 AAACGCCGCTAAAGACCAA-ACCTTTAGCGGCGCTTTTAC-CAC
*
22684908 AAACACCGCTAAAGACCAAACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAACCTTTAGCGGCGCTTTTACCAC
*
22684950 AAACGCCGCTAAAGACGAAGACCTTTA-----GCTTTTACCAC
1 AAACGCCGCTAAAGACCAA-ACCTTTAGCGGCGCTTTTACCAC
*
22684988 AAACGCCGCTAAAGACGAAGACCTTTA-----GCTTTTACCAC
1 AAACGCCGCTAAAGACCAA-ACCTTTAGCGGCGCTTTTACCAC
*
22685026 AAACGCCGCTAAAGACGAAGACCTTTA-----GCTTTTACCAC
1 AAACGCCGCTAAAGACCAA-ACCTTTAGCGGCGCTTTTACCAC
* * *
22685064 AAACGCCGCTAAAGACCATGACCTTTAGCGGC-ATTTTTCCTAC
1 AAACGCCGCTAAAGACCA-AACCTTTAGCGGCGCTTTTACC-AC
* * * * * *
22685107 AAACGCCGCTATAGAATC-GACCTGTAGCGGCGTTTTTCCCAC
1 AAACGCCGCTAAAG-ACCAAACCTTTAGCGGCGCTTTTACCAC
* ** *
22685149 AAACGCCGCTATAGAATAGACCTTTAGCGGCGCTTTT-CACAC
1 AAACGCCGCTAAAGACCAAACCTTTAGCGGCGCTTTTAC-CAC
* * * *
22685191 AAACGCCGATATAGAACAAACCTTTAGCGACGCTT
1 AAACGCCGCTAAAGACCAAACCTTTAGCGGCGCTT
22685226 CTCGCAAAAA
Statistics
Matches: 285, Mismatches: 20, Indels: 27
0.86 0.06 0.08
Matches are distributed among these distances:
38 111 0.39
41 2 0.01
42 123 0.43
43 47 0.16
44 2 0.01
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (42 bp):
AAACGCCGCTAAAGACCAAACCTTTAGCGGCGCTTTTACCAC
Found at i:22684990 original size:38 final size:38
Alignment explanation
Indices: 22684865--22685092 Score: 298
Period size: 38 Copynumber: 5.8 Consensus size: 38
22684855 TTTTAGAAAT
22684865 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTT-CTCAC
1 AAACGCCGCTAAAGACCAAGACCTTTA-----GCTTTTAC-CAC
*
22684908 AAACACCGCTAAAGACCAA-ACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTA-----GCTTTTACCAC
*
22684950 AAACGCCGCTAAAGACGAAGACCTTTAGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCTTTTACCAC
*
22684988 AAACGCCGCTAAAGACGAAGACCTTTAGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCTTTTACCAC
*
22685026 AAACGCCGCTAAAGACGAAGACCTTTAGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCTTTTACCAC
*
22685064 AAACGCCGCTAAAGACCATGACCTTTAGC
1 AAACGCCGCTAAAGACCAAGACCTTTAGC
22685093 GGCATTTTTC
Statistics
Matches: 178, Mismatches: 5, Indels: 9
0.93 0.03 0.05
Matches are distributed among these distances:
38 114 0.64
42 38 0.21
43 26 0.15
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (38 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCTTTTACCAC
Found at i:22685237 original size:42 final size:42
Alignment explanation
Indices: 22685149--22685239 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
22685139 TTTTTCCCAC
* * * * * *
22685149 AAACGCCGCTATAGAATAGACCTTTAGCGGCGCTTTTCACAC
1 AAACGCCGATATAGAACAAACCTTTAGCGACGCTTCTCACAA
*
22685191 AAACGCCGATATAGAACAAACCTTTAGCGACGCTTCTCGCAA
1 AAACGCCGATATAGAACAAACCTTTAGCGACGCTTCTCACAA
22685233 AAACGCC
1 AAACGCC
22685240 ACTAAAAACA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.20
Consensus pattern (42 bp):
AAACGCCGATATAGAACAAACCTTTAGCGACGCTTCTCACAA
Found at i:22685237 original size:84 final size:84
Alignment explanation
Indices: 22685064--22685250 Score: 200
Period size: 84 Copynumber: 2.2 Consensus size: 84
22685054 CTTTTACCAC
* * *
22685064 AAACGCCGCTAAAGACCATGACCTTTAGCGGCATTTTTCCTACAAACGCCGCTATAGAATCGACC
1 AAACGCCGCTAAAGA-CATGACCTTTAGCGGCACTTTTCCTACAAACGCCGATATAGAATCAACC
* * * *
22685129 TGTAGCGGCGTTTTTCCCAC
65 TGTAGCGACGCTTCTCCCAA
* *
22685149 AAACGCCGCTATAGA-ATAGACCTTTAGCGGCGCTTTTCAC-ACAAACGCCGATATAGAA-CAAA
1 AAACGCCGCTAAAGACAT-GACCTTTAGCGGCACTTTTC-CTACAAACGCCGATATAGAATC-AA
* *
22685211 CCTTTAGCGACGCTTCTCGCAA
63 CCTGTAGCGACGCTTCTCCCAA
* *
22685233 AAACGCCACTAAAAACAT
1 AAACGCCGCTAAAGACAT
22685251 AACATTTAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
83 3 0.04
84 64 0.76
85 17 0.20
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (84 bp):
AAACGCCGCTAAAGACATGACCTTTAGCGGCACTTTTCCTACAAACGCCGATATAGAATCAACCT
GTAGCGACGCTTCTCCCAA
Found at i:22689838 original size:50 final size:50
Alignment explanation
Indices: 22689761--22690186 Score: 267
Period size: 50 Copynumber: 8.5 Consensus size: 50
22689751 TTTGGAAAGT
* * *
22689761 AAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAATC
1 AAGATTCGCTATTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
* *
22689811 ATGATTCGCTATTGTGGCTTTAATCTTTTGAACTACAATGTCGGGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
* * * ** ** ** * * * *
22689861 ATGATTCACCGA-TGTGGCTTTAATCTGCTCCACTGC-ATCACCTGAGAGGT
1 AAGATTC-GCTATTGTGGCTTTAATCTTTTGAACTGCAAT-GTCGGGGAAGC
* * *
22689911 AAGATTCACTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGAGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
* * ** * * *
22689961 AAGATTCACCGA-TGTGGCTTTAAT-TTGTTCCACTGC-ATCGCCTGGGGTA-T
1 AAGATTC-GCTATTGTGGCTTTAATCTT-TTGAACTGCAAT-GTC-GGGGAAGC
* * *
22690011 AAGATTCGTTGTTGTGGCTTTAATCTTTTGAACTGCAATGTCAGGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
* * * * * ** * * * *
22690061 AAGATTCACCGA-TGTGTCTATAATCTGTTCCACTGC-ATCGCCTGGGAGGT
1 AAGATTC-GCTATTGTGGCTTTAATCTTTTGAACTGCAAT-GTCGGGGAAGC
* * * * * *
22690111 AAGATTCGCTGTTATAGCTTTAATATTTTGAATTGTAATGTCGGGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
*
22690161 AAGATTCACTGA-TGTGGCTTTAATCT
1 AAGATTCGCT-ATTGTGGCTTTAATCT
22690187 GTTCCACTGC
Statistics
Matches: 272, Mismatches: 87, Indels: 34
0.69 0.22 0.09
Matches are distributed among these distances:
49 15 0.06
50 241 0.89
51 16 0.06
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (50 bp):
AAGATTCGCTATTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
Found at i:22689936 original size:100 final size:99
Alignment explanation
Indices: 22689813--22690216 Score: 567
Period size: 100 Copynumber: 4.0 Consensus size: 99
22689803 GGGGAATCAT
* * *
22689813 GATTCGCTATTGTGGCTTTAATCTTTTGAACTACAATGTCGGGGAAGCATGATTCACCGATGTGG
1 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
* *
22689878 CTTTAATCTGCTCCACTGCATCACCTGAGAGGTAA
66 CTTTAATCTGTTCCACTGCATCGCCTG-GAGGTAA
* *
22689913 GATTCACTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTGG
1 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
*
22689978 CTTTAATTTGTTCCACTGCATCGCCTGG-GGTATAA
66 CTTTAATCTGTTCCACTGCATCGCCTGGAGG--TAA
* * * * *
22690013 GATTCGTTGTTGTGGCTTTAATCTTTTGAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGT
1 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
*
22690078 CTATAATCTGTTCCACTGCATCGCCTGGGAGGTAA
66 CTTTAATCTGTTCCACTGCATCGCCT-GGAGGTAA
* * * * * *
22690113 GATTCGCTGTTATAGCTTTAATATTTTGAATTGTAATGTCGGGGAAGCAAGATTCACTGATGTGG
1 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
*
22690178 CTTTAATCTGTTCCACTGCATCGCCTGGGGGATAA
66 CTTTAATCTGTTCCACTGCATCGCCTGGAGG-TAA
22690213 GATT
1 GATT
22690217 TGCTTCTTCG
Statistics
Matches: 271, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
98 2 0.01
99 5 0.02
100 260 0.96
101 2 0.01
102 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (99 bp):
GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
CTTTAATCTGTTCCACTGCATCGCCTGGAGGTAA
Found at i:22690112 original size:200 final size:200
Alignment explanation
Indices: 22689813--22690216 Score: 628
Period size: 200 Copynumber: 2.0 Consensus size: 200
22689803 GGGGAATCAT
* *
22689813 GATTCGCTATTGTGGCTTTAATCTTTTGAACTACAATGTCGGGGAAGCATGATTCACCGATGTGG
1 GATTCGCTATTGTGGCTTTAATCTTTTGAACTACAATGTCAGGGAAGCAAGATTCACCGATGTGG
* * *
22689878 CTTTAATCTGCTCCACTGCATCACCTGAGAGGTAAGATTCACTATTGTAGCTTTAATCTTTTGAA
66 CTATAATCTGCTCCACTGCATCACCTGAGAGGTAAGATTCACTATTATAGCTTTAATATTTTGAA
*
22689943 CTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATTTGTTCCACTGCATCGCCTGGGG
131 CTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCCTGGGG
*
22690008 TATAA
196 GATAA
* * * *
22690013 GATTCGTTGTTGTGGCTTTAATCTTTTGAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGT
1 GATTCGCTATTGTGGCTTTAATCTTTTGAACTACAATGTCAGGGAAGCAAGATTCACCGATGTGG
* * * * *
22690078 CTATAATCTGTTCCACTGCATCGCCTGGGAGGTAAGATTCGCTGTTATAGCTTTAATATTTTGAA
66 CTATAATCTGCTCCACTGCATCACCTGAGAGGTAAGATTCACTATTATAGCTTTAATATTTTGAA
* * * *
22690143 TTGTAATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCCACTGCATCGCCTGGGG
131 CTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCCTGGGG
22690208 GATAA
196 GATAA
22690213 GATT
1 GATT
22690217 TGCTTCTTCG
Statistics
Matches: 184, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
200 184 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (200 bp):
GATTCGCTATTGTGGCTTTAATCTTTTGAACTACAATGTCAGGGAAGCAAGATTCACCGATGTGG
CTATAATCTGCTCCACTGCATCACCTGAGAGGTAAGATTCACTATTATAGCTTTAATATTTTGAA
CTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCCTGGGG
GATAA
Found at i:22690400 original size:44 final size:44
Alignment explanation
Indices: 22690291--22690432 Score: 151
Period size: 44 Copynumber: 3.2 Consensus size: 44
22690281 TATCTTTAGA
* * *
22690291 GAGATATGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGG
1 GAGATAAGATTCTTTATTTTAATCTGCTCCACTGTAATCTCAGG
* * **** **
22690335 GAAATAGGATTAC-CGGCTTTAATCTGCTCCGTTGTAATCTCAGG
1 GAGATAAGATT-CTTTATTTTAATCTGCTCCACTGTAATCTCAGG
* *
22690379 GAGATAAGATTCTTTATTTTAATCCGCTCTACTGTAATCTCAGG
1 GAGATAAGATTCTTTATTTTAATCTGCTCCACTGTAATCTCAGG
22690423 GAGATAAGAT
1 GAGATAAGAT
22690433 CTGTGGCTTA
Statistics
Matches: 76, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
43 1 0.01
44 74 0.97
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (44 bp):
GAGATAAGATTCTTTATTTTAATCTGCTCCACTGTAATCTCAGG
Found at i:22691767 original size:8 final size:7
Alignment explanation
Indices: 22691747--22691796 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
22691737 TTAGCCTCTC
22691747 CATTTTT
1 CATTTTT
22691754 -ACTTTTT
1 CA-TTTTT
22691761 CATTTTTT
1 CA-TTTTT
22691769 CATTTTT
1 CATTTTT
22691776 CA-TTTT
1 CATTTTT
22691782 CATTTTT
1 CATTTTT
22691789 CATCTTTT
1 CAT-TTTT
22691797 TTTTTTTGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
6 7 0.18
7 19 0.50
8 12 0.32
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:22691774 original size:15 final size:15
Alignment explanation
Indices: 22691747--22691797 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 15
22691737 TTAGCCTCTC
*
22691747 CATTTTTAC-TTTTT
1 CATTTTTTCATTTTT
22691761 CATTTTTTCATTTTT
1 CATTTTTTCATTTTT
22691776 CA--TTTTCATTTTT
1 CATTTTTTCATTTTT
22691789 CATCTTTTT
1 CAT-TTTTT
22691798 TTTTTTGCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 13 0.41
14 8 0.25
15 7 0.22
16 4 0.12
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (15 bp):
CATTTTTTCATTTTT
Found at i:22696632 original size:14 final size:14
Alignment explanation
Indices: 22696613--22696640 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
22696603 CCCAAAATTG
22696613 GTACCGAATTGATC
1 GTACCGAATTGATC
22696627 GTACCGAATTGATC
1 GTACCGAATTGATC
22696641 ATTTTATGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (14 bp):
GTACCGAATTGATC
Found at i:22697937 original size:8 final size:8
Alignment explanation
Indices: 22697914--22697948 Score: 52
Period size: 8 Copynumber: 4.1 Consensus size: 8
22697904 AAAACTTAAG
22697914 ATAATAACA
1 ATAATAA-A
22697923 TATAATAAA
1 -ATAATAAA
22697932 ATAATAAA
1 ATAATAAA
22697940 ATAATAAA
1 ATAATAAA
22697948 A
1 A
22697949 ATCATAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 17 0.68
9 1 0.04
10 7 0.28
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (8 bp):
ATAATAAA
Found at i:22702554 original size:14 final size:14
Alignment explanation
Indices: 22702501--22702560 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
22702491 ACTAATTAAT
*
22702501 CTAAACCCTAAACC
1 CTAAACCCTAAATC
* *
22702515 CT-AACCC-GACTC
1 CTAAACCCTAAATC
*
22702527 TTAAATCCCTAAATC
1 CTAAA-CCCTAAATC
22702542 CTAAACCCTAAATC
1 CTAAACCCTAAATC
22702556 TCTAA
1 -CTAA
22702561 CTCTTACCCC
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 14 0.40
15 11 0.31
ACGTcount: A:0.38, C:0.37, G:0.02, T:0.23
Consensus pattern (14 bp):
CTAAACCCTAAATC
Found at i:22702954 original size:7 final size:7
Alignment explanation
Indices: 22702944--22703004 Score: 68
Period size: 7 Copynumber: 8.6 Consensus size: 7
22702934 CCCCAGCCTT
22702944 TAAACCA
1 TAAACCA
22702951 TAAACCA
1 TAAACCA
*
22702958 TAAACCG
1 TAAACCA
22702965 TAAACCA
1 TAAACCA
*
22702972 TAAATCA
1 TAAACCA
* *
22702979 TAACCCC
1 TAAACCA
22702986 TAAATCCA
1 TAAA-CCA
*
22702994 TAATCCA
1 TAAACCA
22703001 TAAA
1 TAAA
22703005 ACTTAAAATG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 38 0.88
8 5 0.12
ACGTcount: A:0.51, C:0.28, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:22702968 original size:21 final size:21
Alignment explanation
Indices: 22702944--22703004 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
22702934 CCCCAGCCTT
*
22702944 TAAACCATAAACCATAAACCG
1 TAAACCATAAACCATAAACCC
* *
22702965 TAAACCATAAATCATAACCCC
1 TAAACCATAAACCATAAACCC
*
22702986 TAAATCCATAATCCATAAA
1 TAAA-CCATAAACCATAAA
22703005 ACTTAAAATG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 22 0.67
22 11 0.33
ACGTcount: A:0.51, C:0.28, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCC
Found at i:22703334 original size:22 final size:21
Alignment explanation
Indices: 22703285--22703334 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
22703275 AAACCCCAAC
*
22703285 CCTTAAACCATAATCCATAAT
1 CCTTAAACCATAATCCATAAA
* *
22703306 CCCTAAACACATAATCCTTAAA
1 CCTTAAAC-CATAATCCATAAA
22703328 CCTTAAA
1 CCTTAAA
22703335 ATTTGGATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (21 bp):
CCTTAAACCATAATCCATAAA
Found at i:22704118 original size:41 final size:40
Alignment explanation
Indices: 22704000--22704136 Score: 125
Period size: 41 Copynumber: 3.4 Consensus size: 40
22703990 TGCATTTTAC
* *
22704000 AAAACGCCGCTAAA-AATAGAGCATTAGCGGCGCTTT-ATAA
1 AAAACGCCGCTAAACCAT-GAGCATTAGCGGCGCTTTCCT-A
* * * ** *
22704040 AAAATGTCGCTAAAAGCCCTGAGCATTAGCGAAGCTTTCCTG
1 AAAACGCCGCT-AAA-CCATGAGCATTAGCGGCGCTTTCCTA
*
22704082 AAAACGCCGCTAAATCCATGAGCATTAGCGGCGCTTTCCCA
1 AAAACGCCGCTAAA-CCATGAGCATTAGCGGCGCTTTCCTA
*
22704123 AAAACGCCGATAAA
1 AAAACGCCGCTAAA
22704137 GCCCCGAAAA
Statistics
Matches: 76, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
40 9 0.12
41 40 0.53
42 25 0.33
43 2 0.03
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCTAAACCATGAGCATTAGCGGCGCTTTCCTA
Found at i:22704138 original size:82 final size:81
Alignment explanation
Indices: 22703969--22704140 Score: 188
Period size: 82 Copynumber: 2.1 Consensus size: 81
22703959 TAAATTATTT
* *
22703969 TAAATCCCTGAGCATTAGCGATGCATTTTACAAAACGCCGCTAAAAATAGAGCATTAGCGGCGCT
1 TAAAGCCCTGAGCATTAGCGAAGCATTTTACAAAACGCCGCTAAAAATAGAGCATTAGCGGCGCT
* * * *
22704034 TTATAAAAAATGTCGC
66 TTACAAAAAACGCCGA
* *
22704050 TAAAAGCCCTGAGCATTAGCGAAGC-TTTCCT-GAAAACGCCGCTAAATCCAT-GAGCATTAGCG
1 T-AAAGCCCTGAGCATTAGCGAAGCATTT--TACAAAACGCCGCTAAA--AATAGAGCATTAGCG
* *
22704112 GCGCTTTCCCAAAAACGCCGA
61 GCGCTTTACAAAAAACGCCGA
22704133 TAAAGCCC
1 TAAAGCCC
22704141 CGAAAACTCA
Statistics
Matches: 76, Mismatches: 10, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
81 4 0.05
82 42 0.55
83 28 0.37
84 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.22
Consensus pattern (81 bp):
TAAAGCCCTGAGCATTAGCGAAGCATTTTACAAAACGCCGCTAAAAATAGAGCATTAGCGGCGCT
TTACAAAAAACGCCGA
Found at i:22704244 original size:39 final size:39
Alignment explanation
Indices: 22704201--22704310 Score: 112
Period size: 40 Copynumber: 2.8 Consensus size: 39
22704191 CTGGAAAACG
* * * *
22704201 CCGCTAATTCTTGTTTTTAGCGGCGTTTTTCATAAAGCA
1 CCGCTAATACTAGTCTTTAGCGGCGTTTTTCAAAAAGCA
* * * *
22704240 CCGCTAATACTCAGTCTTTAGCGGTGATTTCCAAAAAGCG
1 CCGCTAATACT-AGTCTTTAGCGGCGTTTTTCAAAAAGCA
* *
22704280 CCGTTAATGCTAGATCTTTAGCGGCGTTTTT
1 CCGCTAATACTAG-TCTTTAGCGGCGTTTTT
22704311 TATCCAAGCG
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 12 0.21
40 44 0.79
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (39 bp):
CCGCTAATACTAGTCTTTAGCGGCGTTTTTCAAAAAGCA
Found at i:22704874 original size:19 final size:20
Alignment explanation
Indices: 22704832--22704876 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
22704822 TTTAGCCACC
*
22704832 AAAAAAAATATCGAAAATTA
1 AAAAAAAATATCGAAAACTA
22704852 AAAAAAAA-ATCGAAAACTGA
1 AAAAAAAATATCGAAAACT-A
22704872 AAAAA
1 AAAAA
22704877 GAAAAAGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.13
Consensus pattern (20 bp):
AAAAAAAATATCGAAAACTA
Found at i:22704875 original size:21 final size:19
Alignment explanation
Indices: 22704832--22704882 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
22704822 TTTAGCCACC
* *
22704832 AAAAAAAATATCGAAAATT
1 AAAAAAAAAATCGAAAATA
22704851 AAAAAAAAAATCGAAAACTGA
1 AAAAAAAAAATCGAAAA-T-A
22704872 AAAAAGAAAAA
1 AAAAA-AAAAA
22704883 GTGGTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 16 0.59
20 1 0.04
21 5 0.19
22 5 0.19
ACGTcount: A:0.75, C:0.06, G:0.08, T:0.12
Consensus pattern (19 bp):
AAAAAAAAAATCGAAAATA
Found at i:22708217 original size:22 final size:20
Alignment explanation
Indices: 22708185--22708282 Score: 62
Period size: 22 Copynumber: 4.8 Consensus size: 20
22708175 TAAATTCTCT
22708185 AAAGC-ACCAAAGAAAATCG
1 AAAGCAACCAAAGAAAATCG
*
22708204 AAAGCAAACTCAAAGAAAA-AG
1 AAAGC-AAC-CAAAGAAAATCG
* ** *
22708225 -AAGCAACGAATA-AATTCTCT
1 AAAGCAACCAA-AGAA-AATCG
22708245 AAAGC-ACCAAAGAAAATCG
1 AAAGCAACCAAAGAAAATCG
22708264 AAAGCAAACTCAAAGAAAA
1 AAAGC-AAC-CAAAGAAAA
22708283 AGAAGCAATG
Statistics
Matches: 58, Mismatches: 10, Indels: 19
0.67 0.11 0.22
Matches are distributed among these distances:
18 4 0.07
19 17 0.29
20 10 0.17
21 9 0.16
22 18 0.31
ACGTcount: A:0.59, C:0.18, G:0.13, T:0.09
Consensus pattern (20 bp):
AAAGCAACCAAAGAAAATCG
Found at i:22708267 original size:60 final size:60
Alignment explanation
Indices: 22708174--22708290 Score: 234
Period size: 60 Copynumber: 1.9 Consensus size: 60
22708164 GAATTCTTTC
22708174 ATAAATTCTCTAAAGCACCAAAGAAAATCGAAAGCAAACTCAAAGAAAAAGAAGCAACGA
1 ATAAATTCTCTAAAGCACCAAAGAAAATCGAAAGCAAACTCAAAGAAAAAGAAGCAACGA
22708234 ATAAATTCTCTAAAGCACCAAAGAAAATCGAAAGCAAACTCAAAGAAAAAGAAGCAA
1 ATAAATTCTCTAAAGCACCAAAGAAAATCGAAAGCAAACTCAAAGAAAAAGAAGCAA
22708291 TGAAAAACAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.57, C:0.18, G:0.13, T:0.12
Consensus pattern (60 bp):
ATAAATTCTCTAAAGCACCAAAGAAAATCGAAAGCAAACTCAAAGAAAAAGAAGCAACGA
Found at i:22710811 original size:26 final size:25
Alignment explanation
Indices: 22710781--22710829 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
22710771 ATGAATTTTC
22710781 TCAAAATTTTA-TTGGGGATAAAATTG
1 TCAAAATTTTACTT--GGATAAAATTG
22710807 TCAAAATTTTACTTGGATAAAAT
1 TCAAAATTTTACTTGGATAAAAT
22710830 CGGGGTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 11 0.50
27 2 0.09
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.39
Consensus pattern (25 bp):
TCAAAATTTTACTTGGATAAAATTG
Found at i:22714135 original size:18 final size:18
Alignment explanation
Indices: 22714112--22714163 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
22714102 ATGGCAAAGT
*
22714112 TGAGAAATGAATATGAGA
1 TGAGAAATGAATATGAAA
22714130 TGAGAAATGAAATATGAAA
1 TGAGAAATG-AATATGAAA
22714149 TGATGAAATG-ATATG
1 TGA-GAAATGAATATG
22714164 TGAATCTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 14 0.45
19 11 0.35
20 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (18 bp):
TGAGAAATGAATATGAAA
Found at i:22714145 original size:19 final size:19
Alignment explanation
Indices: 22714112--22714159 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
22714102 ATGGCAAAGT
*
22714112 TGAGAAATG-AATATGAGA
1 TGAGAAATGAAATATGAAA
22714130 TGAGAAATGAAATATGAAA
1 TGAGAAATGAAATATGAAA
22714149 TGATGAAATGA
1 TGA-GAAATGA
22714160 TATGTGAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 9 0.33
19 11 0.41
20 7 0.26
ACGTcount: A:0.52, C:0.00, G:0.25, T:0.23
Consensus pattern (19 bp):
TGAGAAATGAAATATGAAA
Found at i:22719231 original size:45 final size:45
Alignment explanation
Indices: 22719175--22719260 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
22719165 GAATACCGAA
* * * *
22719175 TATAATGCCATGGTATCTTTCAACCATGGTCTTTTCCTTTTTGAG
1 TATAATACCATGATATATTTCAACCACGGTCTTTTCCTTTTTGAG
* *
22719220 TATAATACCATGATGTATTTCAATCACGGTCTTTTCCTTTT
1 TATAATACCATGATATATTTCAACCACGGTCTTTTCCTTTT
22719261 CCCAAATCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.45
Consensus pattern (45 bp):
TATAATACCATGATATATTTCAACCACGGTCTTTTCCTTTTTGAG
Found at i:22723197 original size:17 final size:18
Alignment explanation
Indices: 22723163--22723199 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
22723153 TGTCATTTAC
22723163 AATATAAGTTCAATATCA
1 AATATAAGTTCAATATCA
22723181 AATAT-AGTTCCAA-ATCA
1 AATATAAGTT-CAATATCA
22723198 AA
1 AA
22723200 CTTATCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (18 bp):
AATATAAGTTCAATATCA
Found at i:22727107 original size:44 final size:43
Alignment explanation
Indices: 22727042--22727727 Score: 599
Period size: 44 Copynumber: 15.6 Consensus size: 43
22727032 TGCCTCACTA
** *
22727042 CCAATATAAAAAGACATGATCTGCTATCTTCGATCTACTTCACT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CT
* * * * * * *
22727086 CCAATACATGAATATAAGATCTGCTTTCTTCGATCTATTTCGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCT
* *
22727131 CCAATATGGGAAGACAAGAACTGC-ATCTTCGATCTACTTCCT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCCT
* * * * *
22727173 ACCAATATAGGAAGACAGGATCTGTTATATTTGATCTACTTCACG
1 -CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CT
* * * * *
22727218 CCAATACATGAAGACGAGATCTGCTTTCTTCGATCCACTTCCT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCCT
* *
22727261 ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCCT
1 -CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCCT
* *
22727305 ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACG
1 -CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CT
* * * *
22727350 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCT
* * * * *
22727395 CCAATATGGGAAGATAAGATTTAC-ATCTTCGATCCACTTCCT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCCT
* * *
22727437 ACCAATATAAGAAGACATGATCTGCTATCTTCGATCTACTTCACG
1 -CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CT
* * * * ** *
22727482 CCAATACATGAAGACAATATCTGCTTTCTTTAATCTACTTTGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC-TT-CCT
* * * *
22727527 CCAGTATGGGAAGACAAGATCTGC-ATCTTAGATCCACTTCCT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCCT
* * * *
22727569 ACCAGTATAGGAAGACAGGTTCTGCTATCTTCGATCTACTTCACG
1 -CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CT
* * * *
22727614 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCT
* * *
22727659 CCAGTAT-GAGAAGGCAAGATCTGC-ATCTTCGATCCACTTCCT
1 CCAATATAG-GAAGACAAGATCTGCTATCTTCGATCTACTTCCT
* *
22727701 ACCAGTATAGGAAGACAGGATCTGCTA
1 -CCAATATAGGAAGACAAGATCTGCTA
22727728 CTTTTTAACC
Statistics
Matches: 515, Mismatches: 104, Indels: 46
0.77 0.16 0.07
Matches are distributed among these distances:
42 8 0.02
43 82 0.16
44 337 0.65
45 84 0.16
46 4 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCCT
Found at i:22727291 original size:132 final size:132
Alignment explanation
Indices: 22727039--22727727 Score: 1047
Period size: 132 Copynumber: 5.2 Consensus size: 132
22727029 GTCTGCCTCA
** * * * *
22727039 CTACCAATATAAAAAGACATGATCTGCTATCTTCGATCTACTTCACTCCAATACATGAATATAAG
1 CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
* * *
22727104 ATCTGCTTTCTTCGATCTATTTCGCCACCAATATGGGAAGACAAGAACTGCATCTTCGATCTACT
66 ATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACT
22727169 TC
131 TC
* * * *
22727171 CTACCAATATAGGAAGACAGGATCTGTTATATTTGATCTACTTCACGCCAATACATGAAGACGAG
1 CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
* * * *
22727236 ATCTGCTTTCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCAC
66 ATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCAC
22727300 TTC
130 TTC
22727303 CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
* * * *
22727368 ATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGATAAGATTTACATCTTCGATCCACT
66 ATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACT
22727433 TC
131 TC
* * *
22727435 CTACCAATATAAGAAGACATGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAT
1 CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
** * * *
22727500 ATCTGCTTTCTTTAATCTACTTTGCCACCAGTATGGGAAGACAAGATCTGCATCTTAGATCCACT
66 ATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACT
22727565 TC
131 TC
* *
22727567 CTACCAGTATAGGAAGACAGGTTCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
* * *
22727632 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGAGAAGGCAAGATCTGCATCTTCGATCCACT
66 ATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACT
22727697 TC
131 TC
*
22727699 CTACCAGTATAGGAAGACAGGATCTGCTA
1 CTACCAATATAGGAAGACAGGATCTGCTA
22727728 CTTTTTAACC
Statistics
Matches: 503, Mismatches: 52, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
131 23 0.05
132 459 0.91
133 21 0.04
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (132 bp):
CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
ATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACT
TC
Found at i:22739458 original size:15 final size:15
Alignment explanation
Indices: 22739438--22739472 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
22739428 TATATATGCC
22739438 ACAATAATAAATAAA
1 ACAATAATAAATAAA
* *
22739453 ACAATAATAGATATA
1 ACAATAATAAATAAA
22739468 ACAAT
1 ACAAT
22739473 GTCATAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.09, G:0.03, T:0.23
Consensus pattern (15 bp):
ACAATAATAAATAAA
Found at i:22748397 original size:19 final size:19
Alignment explanation
Indices: 22748373--22748413 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
22748363 TGTATATATA
22748373 TAGCTAATATAGCCTTAAT
1 TAGCTAATATAGCCTTAAT
22748392 TAGCTAATATAGCCTTAAT
1 TAGCTAATATAGCCTTAAT
22748411 TAG
1 TAG
22748414 AAATGGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
TAGCTAATATAGCCTTAAT
Found at i:22752233 original size:16 final size:16
Alignment explanation
Indices: 22752212--22752281 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
22752202 TTTGGTTCGC
22752212 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
22752228 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
22752244 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
*
22752260 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
22752276 CGTAAT
1 TGTAAT
22752282 AGGTAAATCT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.37, C:0.03, G:0.34, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:22752323 original size:46 final size:44
Alignment explanation
Indices: 22752263--22752351 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
22752253 ATAGATGCGT
*
22752263 AATGGAATAGAGGCGTAATAGGTAAATCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAAT-GGT-AATCTTGTGTTTGGTTGAATGG
*
22752309 AATGGAATAGAGGCGTAATGGTATTCTTGTGTTTGGTTGAATG
1 AATGGAATAGAGGCGTAATGGTAATCTTGTGTTTGGTTGAATG
22752352 TAATAGAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 19 0.46
45 3 0.07
46 19 0.46
ACGTcount: A:0.28, C:0.04, G:0.31, T:0.36
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATGGTAATCTTGTGTTTGGTTGAATGG
Found at i:22752579 original size:56 final size:56
Alignment explanation
Indices: 22752464--22752592 Score: 136
Period size: 56 Copynumber: 2.3 Consensus size: 56
22752454 AATAAGATTA
* * *
22752464 TTAATATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAAT
1 TTAATA-AAATAATAAATAATTAAATAAAATTTTAACATAATTATTATT-AATATAAT
* * *
22752522 TTAATAAAA-AATATATAATTAAATAAAATTCTTAATATAATTATTCTT-ATATGAAT
1 TTAATAAAATAATAAATAATTAAATAAAATT-TTAACATAATTATTATTAATAT-AAT
* *
22752578 TTACTAAAATCATAA
1 TTAATAAAATAATAA
22752593 TATATAATAN
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
55 4 0.07
56 28 0.47
57 21 0.36
58 6 0.10
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.43
Consensus pattern (56 bp):
TTAATAAAATAATAAATAATTAAATAAAATTTTAACATAATTATTATTAATATAAT
Found at i:22759179 original size:30 final size:29
Alignment explanation
Indices: 22759145--22759202 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
22759135 GAAACTAATC
22759145 TCAATTACTGATTCTTAAGAAATTAGGATA
1 TCAATTACTGATTCTT-AGAAATTAGGATA
*
22759175 TCAATTACTGATTCTTAGGAATTAGGAT
1 TCAATTACTGATTCTTAGAAATTAGGAT
22759203 TTATTTCCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (29 bp):
TCAATTACTGATTCTTAGAAATTAGGATA
Found at i:22770825 original size:37 final size:37
Alignment explanation
Indices: 22770761--22770847 Score: 106
Period size: 37 Copynumber: 2.4 Consensus size: 37
22770751 TGCCGAGGCG
* *
22770761 TGTTATCGGTTGGATTAGGTTACATGAGCATTTGGCA
1 TGTTATCGGTTGGATTAGCTTACATGAGCATTTAGCA
* * *
22770798 TGTTATTGGTTGGATTAGCTCT-TATGAGCATTTAGCG
1 TGTTATCGGTTGGATTAGCT-TACATGAGCATTTAGCA
22770835 TGTT-TCGGTTGGA
1 TGTTATCGGTTGGA
22770848 CTACTTGTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
36 8 0.19
37 34 0.79
38 1 0.02
ACGTcount: A:0.18, C:0.10, G:0.30, T:0.41
Consensus pattern (37 bp):
TGTTATCGGTTGGATTAGCTTACATGAGCATTTAGCA
Found at i:22771940 original size:54 final size:54
Alignment explanation
Indices: 22771828--22771940 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
22771818 GACACAACCG
* * * *
22771828 TGTGTATCAAGTCAGTGAGTCATACGGTTTGGAACACGGTCTATAACACGGCTC
1 TGTGTATCAAGTCAGTGAGTCACACGGTTTGGAACACGGGCTAGAACACGGATC
* * * *
22771882 TGTGTATTAAGTCAGTGAGTTACACGGTTT-GAGACACGGGCTGGGACAC-GATC
1 TGTGTATCAAGTCAGTGAGTCACACGGTTTGGA-ACACGGGCTAGAACACGGATC
22771935 ATGTGT
1 -TGTGT
22771941 CCCAACTTCG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
53 5 0.10
54 44 0.90
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (54 bp):
TGTGTATCAAGTCAGTGAGTCACACGGTTTGGAACACGGGCTAGAACACGGATC
Found at i:22781439 original size:23 final size:23
Alignment explanation
Indices: 22781409--22781527 Score: 121
Period size: 23 Copynumber: 5.1 Consensus size: 23
22781399 NNNNNNNNNN
22781409 GGACAGCATATATGTAACAAATT
1 GGACAGCATATATGTAACAAATT
* * * *
22781432 GGACAGCATTTAAGCATCAAAATT
1 GGACAGCATATATGTAAC-AAATT
22781456 GGACAGCATATATGTAACAAATT
1 GGACAGCATATATGTAACAAATT
** * * * *
22781479 GGGTAGCATTTAAGCATCAAAATT
1 GGACAGCATATATGTAAC-AAATT
*
22781503 GGACAGCATATATGTAAAAAATT
1 GGACAGCATATATGTAACAAATT
22781526 GG
1 GG
22781528 TTCAACTCAT
Statistics
Matches: 73, Mismatches: 21, Indels: 4
0.74 0.21 0.04
Matches are distributed among these distances:
23 38 0.52
24 35 0.48
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (23 bp):
GGACAGCATATATGTAACAAATT
Done.