Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 70 of 141
Found at i:22781459 original size:24 final size:24
Alignment explanation
Indices: 22781427--22781511 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
22781417 TATATGTAAC
22781427 AAATTGGACAGCATTTAAGCATCA
1 AAATTGGACAGCATTTAAGCATCA
* * * *
22781451 AAATTGGACAGCATATATGTAAC-
1 AAATTGGACAGCATTTAAGCATCA
**
22781474 AAATTGGGTAGCATTTAAGCATCA
1 AAATTGGACAGCATTTAAGCATCA
22781498 AAATTGGACAGCAT
1 AAATTGGACAGCAT
22781512 ATATGTAAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
23 17 0.35
24 31 0.65
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (24 bp):
AAATTGGACAGCATTTAAGCATCA
Found at i:22781478 original size:47 final size:47
Alignment explanation
Indices: 22781409--22781527 Score: 211
Period size: 47 Copynumber: 2.5 Consensus size: 47
22781399 NNNNNNNNNN
22781409 GGACAGCATATATGTAACAAATTGGACAGCATTTAAGCATCAAAATT
1 GGACAGCATATATGTAACAAATTGGACAGCATTTAAGCATCAAAATT
**
22781456 GGACAGCATATATGTAACAAATTGGGTAGCATTTAAGCATCAAAATT
1 GGACAGCATATATGTAACAAATTGGACAGCATTTAAGCATCAAAATT
*
22781503 GGACAGCATATATGTAAAAAATTGG
1 GGACAGCATATATGTAACAAATTGG
22781528 TTCAACTCAT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (47 bp):
GGACAGCATATATGTAACAAATTGGACAGCATTTAAGCATCAAAATT
Found at i:22782435 original size:43 final size:42
Alignment explanation
Indices: 22782367--22782496 Score: 167
Period size: 43 Copynumber: 3.0 Consensus size: 42
22782357 AACTCGTACA
*
22782367 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAA-CACATATCG
*
22782410 ATGCC-ACTGTCCCAGACAGT-TTCTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGT-AACACATA-TCG
22782453 ATGCCAACGTCCCAGACGTGGTCTTACACGATAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAACACATATCG
22782496 A
1 A
22782497 AAATCTTATG
Statistics
Matches: 76, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
42 5 0.07
43 63 0.83
44 8 0.11
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAACACATATCG
Found at i:22787677 original size:16 final size:16
Alignment explanation
Indices: 22787656--22787687 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22787646 ATTTTGTTGC
*
22787656 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
22787672 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
22787688 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:22788002 original size:46 final size:48
Alignment explanation
Indices: 22787918--22788037 Score: 131
Period size: 46 Copynumber: 2.5 Consensus size: 48
22787908 GTTCACATAT
* *
22787918 TAGCCTGCACATAGTACTACACATGTGTCCATCACTATCC-G-CGT-GG
1 TAGCCTGCACATAGTACTACACACGTGTCCA-CACTATCCGGACGTAAG
* *
22787964 TAGCTTGCACATAGTACTACACACGTGATCGA-AGCTATCCGGTACGTACAG
1 TAGCCTGCACATAGTACTACACACGTG-TCCACA-CTATCCGG-ACGTA-AG
22788015 TAGCCTGCACATAGTACTACACA
1 TAGCCTGCACATAGTACTACACA
22788038 TGCGACCTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
45 1 0.02
46 31 0.50
47 4 0.06
49 3 0.05
51 23 0.37
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (48 bp):
TAGCCTGCACATAGTACTACACACGTGTCCACACTATCCGGACGTAAG
Found at i:22790617 original size:23 final size:25
Alignment explanation
Indices: 22790564--22790620 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
22790554 TTTGTGATTT
*
22790564 TTTAATAAAATATTATATTAATGTAA
1 TTTAATTAAATATTATATTAA-GTAA
*
22790590 TTTAATTAGATATT-TATTAA-TAA
1 TTTAATTAAATATTATATTAAGTAA
22790613 TTTAATTA
1 TTTAATTA
22790621 TAAAAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 11 0.38
25 6 0.21
26 12 0.41
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (25 bp):
TTTAATTAAATATTATATTAAGTAA
Found at i:22811427 original size:23 final size:23
Alignment explanation
Indices: 22811401--22811446 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22811391 TTTTTAACCA
*
22811401 CTTTTT-TTTCTTTTAGATTTTTT
1 CTTTTTCTTT-TTTTACATTTTTT
*
22811424 CTTTTTCTTTTTTTCCATTTTTT
1 CTTTTTCTTTTTTTACATTTTTT
22811447 GTGGCTAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.07, C:0.13, G:0.02, T:0.78
Consensus pattern (23 bp):
CTTTTTCTTTTTTTACATTTTTT
Found at i:22813091 original size:29 final size:29
Alignment explanation
Indices: 22813049--22813104 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
22813039 AAAATGTTAG
22813049 AGAAAGCACGCCTAACTAGGTGCGTTTAA
1 AGAAAGCACGCCTAACTAGGTGCGTTTAA
22813078 AGAAAGCACGCCTAACTAGGTGCGTTT
1 AGAAAGCACGCCTAACTAGGTGCGTTT
22813105 TCTCAAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (29 bp):
AGAAAGCACGCCTAACTAGGTGCGTTTAA
Found at i:22818429 original size:15 final size:17
Alignment explanation
Indices: 22818409--22818445 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
22818399 GTCAAACATT
22818409 ATTATAAT-TATGG-TA
1 ATTATAATATATGGTTA
*
22818424 ATTATAATATTTGGTTA
1 ATTATAATATATGGTTA
22818441 ATTAT
1 ATTAT
22818446 TATGATTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 4 0.21
17 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
ATTATAATATATGGTTA
Found at i:22818448 original size:38 final size:36
Alignment explanation
Indices: 22818332--22818448 Score: 101
Period size: 38 Copynumber: 3.0 Consensus size: 36
22818322 GAAATTCTTG
* * *
22818332 TTATAATTACTATAATTATAATTTAGGATTGAATATAA
1 TTATAATTACTGTAATTATAATTTTGG-TT-AATATTA
* *
22818370 TTATAATTACTGTAATTATAATTTTTTTGGTCAAACATTA
1 TTATAATTACTGTAATTATAA---TTTTGGT-TAATATTA
22818410 TTATAATTA-TGGTAATTATAATATTTGGTTAATTATTA
1 TTATAATTACT-GTAATTATAAT-TTTGGTTAA-TATTA
22818448 T
1 T
22818449 GATTTGATTC
Statistics
Matches: 65, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
37 3 0.05
38 31 0.48
39 1 0.02
40 25 0.38
41 5 0.08
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (36 bp):
TTATAATTACTGTAATTATAATTTTGGTTAATATTA
Found at i:22835127 original size:14 final size:14
Alignment explanation
Indices: 22835108--22835142 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
22835098 ATTTTTTTTC
*
22835108 TTCTAATGACACTA
1 TTCTAACGACACTA
*
22835122 TTCTAACGATACTA
1 TTCTAACGACACTA
22835136 TTCTAAC
1 TTCTAAC
22835143 ATGTAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (14 bp):
TTCTAACGACACTA
Found at i:22835815 original size:24 final size:24
Alignment explanation
Indices: 22835780--22835831 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
22835770 ATATAGAGGT
22835780 CGAGCCAAAGCCAGAGCCCGAGCC
1 CGAGCCAAAGCCAGAGCCCGAGCC
* * **
22835804 CGAGCCACAGCCGGAGCTGGAGCC
1 CGAGCCAAAGCCAGAGCCCGAGCC
22835828 CGAG
1 CGAG
22835832 TGGTCGCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.38, G:0.35, T:0.02
Consensus pattern (24 bp):
CGAGCCAAAGCCAGAGCCCGAGCC
Found at i:22836456 original size:62 final size:61
Alignment explanation
Indices: 22836369--22836647 Score: 348
Period size: 62 Copynumber: 4.7 Consensus size: 61
22836359 CAACATTACA
* * * * *
22836369 ACATTAAAACACTAAAACTTGGAACAAACTTTGTAATATAATTTTTGTAATATAAATTATAT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGT-ATATAAATTAAAT
* *
22836431 ACATTACAACATTAAAAATTAGAACAAACTTTGTAATATAAATTTTG--------CT--AT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTATATAAATTAAAT
*
22836482 ACATTACAAC-TTAAAAATTAGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAAT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTG-TATATAAATTAAAT
*
22836543 ACCTTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGT-TACTAAATTAAAT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTATA-TAAATTAAAT
* *
22836604 ACATTACAACATTAAAAATTGAAACAAAATTTGTAATATAAATT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATT
22836648 AGATACATTG
Statistics
Matches: 192, Mismatches: 12, Indels: 27
0.83 0.05 0.12
Matches are distributed among these distances:
50 36 0.19
51 12 0.06
53 1 0.01
59 1 0.01
60 2 0.01
61 63 0.33
62 77 0.40
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.36
Consensus pattern (61 bp):
ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTATATAAATTAAAT
Found at i:22836506 original size:50 final size:51
Alignment explanation
Indices: 22836412--22836647 Score: 203
Period size: 61 Copynumber: 4.3 Consensus size: 51
22836402 TAATATAATT
22836412 TTTGTAATATAAA--TT-ATATACATTACAACATTAAAAATTAGAACAAAC
1 TTTGTAATATAAATTTTGATATACATTACAACATTAAAAATTAGAACAAAC
*
22836460 TTTGTAATATAAATTTTGCTATACATTACAAC-TTAAAAATTAGAACAAAC
1 TTTGTAATATAAATTTTGATATACATTACAACATTAAAAATTAGAACAAAC
* *
22836510 TTTGTAATATAAATTTTGTTATATAAATTAAATACCTTACAACATTAAAAATTGGAACAAAC
1 TTTGTAATATAAATTTTG--------A-T--ATACATTACAACATTAAAAATTAGAACAAAC
*
22836572 TTTGTAATATAAATTTTGTTACTAAATTAAATACATTACAACATTAAAAATT-GAAACAAAA
1 TTTGTAATATAAATTTTG-------A-T--ATACATTACAACATTAAAAATTAG-AACAAAC
22836633 TTTGTAATATAAATT
1 TTTGTAATATAAATT
22836648 AGATACATTG
Statistics
Matches: 163, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
48 13 0.08
50 38 0.23
51 13 0.08
59 1 0.01
60 1 0.01
61 62 0.38
62 35 0.21
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (51 bp):
TTTGTAATATAAATTTTGATATACATTACAACATTAAAAATTAGAACAAAC
Found at i:22836578 original size:112 final size:112
Alignment explanation
Indices: 22836381--22836589 Score: 355
Period size: 112 Copynumber: 1.9 Consensus size: 112
22836371 ATTAAAACAC
* * * *
22836381 TAAAACTTGGAACAAACTTTGTAATATAATTTTTGTAATATAAATTATATACATTACAACATTAA
1 TAAAAATTAGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAATACATTACAACATTAA
22836446 AAATTAGAACAAACTTTGTAATATAAATTTTGCTATACATTACAACT
66 AAATTAGAACAAACTTTGTAATATAAATTTTGCTATACATTACAACT
* *
22836493 TAAAAATTAGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACCTTACAACATTAA
1 TAAAAATTAGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAATACATTACAACATTAA
*
22836558 AAATTGGAACAAACTTTGTAATATAAATTTTG
66 AAATTAGAACAAACTTTGTAATATAAATTTTG
22836590 TTACTAAATT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
112 90 1.00
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (112 bp):
TAAAAATTAGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAATACATTACAACATTAA
AAATTAGAACAAACTTTGTAATATAAATTTTGCTATACATTACAACT
Found at i:22836598 original size:61 final size:62
Alignment explanation
Indices: 22836480--22836647 Score: 277
Period size: 61 Copynumber: 2.7 Consensus size: 62
22836470 AAATTTTGCT
*
22836480 ATACATTACAAC-TTAAAAATTAGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAA
1 ATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAA
* *
22836541 ATACCTTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTA-CTAAATTAA
1 ATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAA
* *
22836602 ATACATTACAACATTAAAAATTGAAACAAAATTTGTAATATAAATT
1 ATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATT
22836648 AGATACATTG
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
61 62 0.62
62 38 0.38
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (62 bp):
ATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAA
Found at i:22839346 original size:18 final size:19
Alignment explanation
Indices: 22839323--22839360 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
22839313 AATAATACAT
22839323 TTTCTTTCTTCTCTT-TTC
1 TTTCTTTCTTCTCTTGTTC
22839341 TTTCTTTCTTCTCTTGTTC
1 TTTCTTTCTTCTCTTGTTC
22839360 T
1 T
22839361 GCTATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTCTTTCTTCTCTTGTTC
Found at i:22840066 original size:19 final size:20
Alignment explanation
Indices: 22840042--22840085 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
22840032 TTTCTGCTTC
22840042 TTCTTCT-CGTACGTTTCTT
1 TTCTTCTACGTACGTTTCTT
**
22840061 TTCTTCTATTTACGTTTCTT
1 TTCTTCTACGTACGTTTCTT
22840081 TTCTT
1 TTCTT
22840086 TTCTCCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.07, C:0.23, G:0.07, T:0.64
Consensus pattern (20 bp):
TTCTTCTACGTACGTTTCTT
Found at i:22845105 original size:30 final size:29
Alignment explanation
Indices: 22845047--22845109 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
22845037 GGTGCAATTG
*
22845047 TATAAATATAATTTTAATTTTAATTCAAT
1 TATAAATAAAATTTTAATTTTAATTCAAT
*
22845076 ATATAGATAAAATTTTAATTTT-ATCTCAAT
1 -TATAAATAAAATTTTAATTTTAAT-TCAAT
22845106 TATA
1 TATA
22845110 CGTATACCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (29 bp):
TATAAATAAAATTTTAATTTTAATTCAAT
Found at i:22847217 original size:49 final size:49
Alignment explanation
Indices: 22847160--22847263 Score: 172
Period size: 49 Copynumber: 2.1 Consensus size: 49
22847150 TCATGTAATA
* * *
22847160 TAATTTTATAAAGTGTTAAGCTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGCGTTAACCTTTTGATTCATGATATTAAACTTAATTT
*
22847209 TAATTTTATAAAGCGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGCGTTAACCTTTTGATTCATGATATTAAACTTAATTT
22847258 TAATTT
1 TAATTT
22847264 GTTTTTTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.49
Consensus pattern (49 bp):
TAATTTTATAAAGCGTTAACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:22849231 original size:16 final size:16
Alignment explanation
Indices: 22849206--22849243 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
22849196 TTGAATTATT
* *
22849206 ATTACGCCTCTATTTC
1 ATTACACCTCTATTCC
22849222 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
22849238 ATTACA
1 ATTACA
22849244 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.32, G:0.03, T:0.39
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:22857719 original size:65 final size:64
Alignment explanation
Indices: 22857626--22857815 Score: 281
Period size: 65 Copynumber: 2.9 Consensus size: 64
22857616 CTAGTCATAA
*
22857626 ATTACCAGCAAAAAAAAACCTTACTTTCTATGATACTTCCTTATCGAGGAATTACTCTATAATAC
1 ATTACCAGC-ATAAAAAACCTTACTTTCTATGATACTTCCTTATCGAGGAATTACTCTATAATAC
* * * *
22857691 ATTATCAGCGTTAAAAAACCTTAATTTCTATGATACTTCCTTATTGAGGAATTACTCTATAATAC
1 ATTACCAGC-ATAAAAAACCTTACTTTCTATGATACTTCCTTATCGAGGAATTACTCTATAATAC
* * *
22857756 ATTACCAGCATAAAAAACCCTTACGTTCTATGATACTTCCTCATCAAGGAATTACTCTAT
1 ATTACCAGCATAAAAAA-CCTTACTTTCTATGATACTTCCTTATCGAGGAATTACTCTAT
22857816 GCTCTTACCT
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
64 7 0.06
65 104 0.94
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (64 bp):
ATTACCAGCATAAAAAACCTTACTTTCTATGATACTTCCTTATCGAGGAATTACTCTATAATAC
Found at i:22864057 original size:16 final size:16
Alignment explanation
Indices: 22864036--22864066 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22864026 CATGTTAGAG
22864036 TACGTAAATTTGAAAC
1 TACGTAAATTTGAAAC
*
22864052 TACGTATATTTGAAA
1 TACGTAAATTTGAAA
22864067 AACTTTTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (16 bp):
TACGTAAATTTGAAAC
Found at i:22864956 original size:64 final size:63
Alignment explanation
Indices: 22864836--22864957 Score: 181
Period size: 63 Copynumber: 1.9 Consensus size: 63
22864826 TATCCCTAGA
**
22864836 GAATGTGTTGATGTAAGGAATGATGGGGCATGCTGTGGTGCTTGTGTAAAATAAACTGGTGCT
1 GAATGTGTTGATGTAAGGAATGATGGGGCATAATGTGGTGCTTGTGTAAAATAAACTGGTGCT
* * * *
22864899 GAATGTGTTGATGTAGGGAATGATTGTGCAATAATGTGGTGGTTGTGTAAAATAAACTG
1 GAATGTGTTGATGTAAGGAATGATGGGGC-ATAATGTGGTGCTTGTGTAAAATAAACTG
22864958 AAACTGAAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
63 26 0.50
64 26 0.50
ACGTcount: A:0.28, C:0.06, G:0.34, T:0.33
Consensus pattern (63 bp):
GAATGTGTTGATGTAAGGAATGATGGGGCATAATGTGGTGCTTGTGTAAAATAAACTGGTGCT
Found at i:22864965 original size:64 final size:63
Alignment explanation
Indices: 22864836--22864974 Score: 170
Period size: 64 Copynumber: 2.2 Consensus size: 63
22864826 TATCCCTAGA
** ***
22864836 GAATGTGTTGATGTAAGGAATGATGGGGCATGCTGTGGTGCTTGTGTAAAATAAACTGGTGCT
1 GAATGTGTTGATGTAAGGAATGATGGGGCATAATGTGGTGCTTGTGTAAAATAAACTGAAACT
* * * *
22864899 GAATGTGTTGATGTAGGGAATGATTGTGCAATAATGTGGTGGTTGTGTAAAATAAACTGAAACT
1 GAATGTGTTGATGTAAGGAATGATGGGGC-ATAATGTGGTGCTTGTGTAAAATAAACTGAAACT
* *
22864963 GAAGGTGATGAT
1 GAATGTGTTGAT
22864975 ACGAGGAATG
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
63 26 0.41
64 38 0.59
ACGTcount: A:0.29, C:0.06, G:0.33, T:0.32
Consensus pattern (63 bp):
GAATGTGTTGATGTAAGGAATGATGGGGCATAATGTGGTGCTTGTGTAAAATAAACTGAAACT
Found at i:22864983 original size:64 final size:64
Alignment explanation
Indices: 22864836--22864991 Score: 160
Period size: 64 Copynumber: 2.5 Consensus size: 64
22864826 TATCCCTAGA
* * ** ***
22864836 GAATGTGTTGATGTAAGGAATGA-TGGGGC-ATGCTGTGGTGCTTGTGTAAAATAAACTGGTGCT
1 GAATGTGTTGATGTAGGGAATGAGT-GTGCAATAATGTGGTGCTTGTGTAAAATAAACTGAAACT
* *
22864899 GAATGTGTTGATGTAGGGAATGATTGTGCAATAATGTGGTGGTTGTGTAAAATAAACTGAAACT
1 GAATGTGTTGATGTAGGGAATGAGTGTGCAATAATGTGGTGCTTGTGTAAAATAAACTGAAACT
22864963 GAA-G-G-TGATGATACGAGGAATGAGTGTGC
1 GAATGTGTTGATG-TA-G-GGAATGAGTGTGC
22864992 GTGTTGTGAT
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
61 5 0.06
62 3 0.04
63 27 0.34
64 44 0.56
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.30
Consensus pattern (64 bp):
GAATGTGTTGATGTAGGGAATGAGTGTGCAATAATGTGGTGCTTGTGTAAAATAAACTGAAACT
Found at i:22871300 original size:7 final size:7
Alignment explanation
Indices: 22871262--22871354 Score: 66
Period size: 7 Copynumber: 13.3 Consensus size: 7
22871252 AGATTGAGGT
22871262 TTGAAAA
1 TTGAAAA
22871269 TTTG-AAA
1 -TTGAAAA
22871276 TTGAAAA
1 TTGAAAA
22871283 TT-AAAA
1 TTGAAAA
*
22871289 TTTGAAGA
1 -TTGAAAA
22871297 TTGAAAA
1 TTGAAAA
22871304 TAT-AAAA
1 T-TGAAAA
22871311 TTGAAAA
1 TTGAAAA
***
22871318 TTGGGGA
1 TTGAAAA
**
22871325 TTGAGGA
1 TTGAAAA
**
22871332 TTGAAGG
1 TTGAAAA
22871339 TTGAAAA
1 TTGAAAA
22871346 TTGAAAA
1 TTGAAAA
22871353 TT
1 TT
22871355 TAGGAAGGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
6 8 0.11
7 55 0.79
8 7 0.10
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.32
Consensus pattern (7 bp):
TTGAAAA
Found at i:22871334 original size:35 final size:33
Alignment explanation
Indices: 22871251--22871354 Score: 91
Period size: 35 Copynumber: 3.0 Consensus size: 33
22871241 AAAATATTTG
* *
22871251 AAGATTGAGGTTTGAAAATTTGAAATTGAAAATT
1 AAGATTGAGGATTGAAAA-TTAAAATTGAAAATT
* *
22871285 AAAATTTGAAGATTGAAAATATAAAATTGAAAATT
1 AAGA-TTGAGGATTGAAAAT-TAAAATTGAAAATT
** **
22871320 GGGGATTGAGGATTGAAGGTTGAAAATTGAAAATT
1 -AAGATTGAGGATTGAAAATT-AAAATTGAAAATT
22871355 TAGGAAGGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
34 5 0.09
35 50 0.89
36 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.32
Consensus pattern (33 bp):
AAGATTGAGGATTGAAAATTAAAATTGAAAATT
Found at i:22874317 original size:30 final size:30
Alignment explanation
Indices: 22874283--22874433 Score: 293
Period size: 30 Copynumber: 5.0 Consensus size: 30
22874273 TTAGAGGAAA
22874283 TTTAGTTATTAGACTCTGCATTGAAGTCTT
1 TTTAGTTATTAGACTCTGCATTGAAGTCTT
22874313 TTTAGTTATTAGACTCTGCATTGAAGTCTT
1 TTTAGTTATTAGACTCTGCATTGAAGTCTT
22874343 TTTAGTTATTAGACTCTGCATTGAAGTCTT
1 TTTAGTTATTAGACTCTGCATTGAAGTCTT
22874373 TTTAGTTATTAGACTCTGCATTGAAGTCTT
1 TTTAGTTATTAGACTCTGCATTGAAGTCTT
*
22874403 TTTAGTTATTAGATTCTGCATTGAAGTCTT
1 TTTAGTTATTAGACTCTGCATTGAAGTCTT
22874433 T
1 T
22874434 CTTTTCGTTA
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
30 120 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.48
Consensus pattern (30 bp):
TTTAGTTATTAGACTCTGCATTGAAGTCTT
Found at i:22886408 original size:54 final size:55
Alignment explanation
Indices: 22886349--22886534 Score: 175
Period size: 54 Copynumber: 3.4 Consensus size: 55
22886339 CTATCATGCA
* * *
22886349 CCTTCTCCCTTCTCCTTTCACCATCT-AGATCCCTGTCCCGGCTCTTCCCTCGCT
1 CCTTCTCCCTTCTCCTTTCACCATCTCAGATCCCTCTCCCGACTCCTCCCTCGCT
** * * *
22886403 CCTTCTCCCTTCTCCTTTC-CC-TCTCCATTTCTCTCTCCCTACTCCTCTCTCGCT
1 CCTTCTCCCTTCTCCTTTCACCATCT-CAGATCCCTCTCCCGACTCCTCCCTCGCT
* * * * **
22886457 CCTTCTCCCTTCTCCTTTCACCA-CTCATG-TCTCTATCTCTACTCCTTGCTCGCT
1 CCTTCTCCCTTCTCCTTTCACCATCTCA-GATCCCTCTCCCGACTCCTCCCTCGCT
* *
22886511 CCCTCTCCCTTCTCCTCTCACCAT
1 CCTTCTCCCTTCTCCTTTCACCAT
22886535 AAATCTCCCT
Statistics
Matches: 111, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
52 3 0.03
53 2 0.02
54 102 0.92
55 4 0.04
ACGTcount: A:0.07, C:0.49, G:0.05, T:0.39
Consensus pattern (55 bp):
CCTTCTCCCTTCTCCTTTCACCATCTCAGATCCCTCTCCCGACTCCTCCCTCGCT
Found at i:22886428 original size:24 final size:24
Alignment explanation
Indices: 22886399--22886475 Score: 64
Period size: 24 Copynumber: 3.0 Consensus size: 24
22886389 GCTCTTCCCT
22886399 CGCTCCTTCTCCCTTCTCCTTTCC
1 CGCTCCTTCTCCCTTCTCCTTTCC
* * * *
22886423 CTCTCCATTTCTCTCTCCCTACTCCTCTCT
1 CGCT-C----CT-TCTCCCTTCTCCTTTCC
22886453 CGCTCCTTCTCCCTTCTCCTTTC
1 CGCTCCTTCTCCCTTCTCCTTTC
22886476 ACCACTCATG
Statistics
Matches: 40, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
24 17 0.43
25 3 0.08
29 3 0.08
30 17 0.43
ACGTcount: A:0.03, C:0.52, G:0.03, T:0.43
Consensus pattern (24 bp):
CGCTCCTTCTCCCTTCTCCTTTCC
Found at i:22888031 original size:15 final size:15
Alignment explanation
Indices: 22888013--22888046 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22888003 TGCGATGGCG
*
22888013 GTGGTGACGATGTTT
1 GTGGTGACGATGCTT
*
22888028 GTGGTGGCGATGCTT
1 GTGGTGACGATGCTT
22888043 GTGG
1 GTGG
22888047 CGTTTGGAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.09, G:0.47, T:0.35
Consensus pattern (15 bp):
GTGGTGACGATGCTT
Found at i:22889115 original size:48 final size:48
Alignment explanation
Indices: 22889063--22889156 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 48
22889053 TAAAATTTAT
*
22889063 CCCAATTTACAACTGAAAAGTAATTATACTGTTCGAAAAAAAAAATAG
1 CCCAATTTACAACTGAAAAGTAATTATACCGTTCGAAAAAAAAAATAG
* * * *
22889111 CCCAATTTACAACTGTAAAGTTATTATACCGTTGGAAAATAAAAAT
1 CCCAATTTACAACTGAAAAGTAATTATACCGTTCGAAAAAAAAAAT
22889157 TATAGTAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.28
Consensus pattern (48 bp):
CCCAATTTACAACTGAAAAGTAATTATACCGTTCGAAAAAAAAAATAG
Found at i:22891196 original size:7 final size:7
Alignment explanation
Indices: 22891180--22891213 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
22891170 TGTTCTCACC
*
22891180 AAACATA
1 AAACACA
22891187 AAACACA
1 AAACACA
22891194 AAACACA
1 AAACACA
22891201 AAACACA
1 AAACACA
22891208 AAACAC
1 AAACAC
22891214 TACAGTTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.71, C:0.26, G:0.00, T:0.03
Consensus pattern (7 bp):
AAACACA
Found at i:22898860 original size:54 final size:54
Alignment explanation
Indices: 22898785--22898892 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
22898775 CAAAACAAAG
22898785 TAAGCCATTTTCGCATGGCTTTTGATTACATTAATATGTACTTGATCCAAAATC
1 TAAGCCATTTTCGCATGGCTTTTGATTACATTAATATGTACTTGATCCAAAATC
22898839 TAAGCCATTTTCGCATGGCTTTTGATTACATTAATATGTACTTGATCCAAAATC
1 TAAGCCATTTTCGCATGGCTTTTGATTACATTAATATGTACTTGATCCAAAATC
22898893 AACTTTCCTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.39
Consensus pattern (54 bp):
TAAGCCATTTTCGCATGGCTTTTGATTACATTAATATGTACTTGATCCAAAATC
Found at i:22899315 original size:2 final size:2
Alignment explanation
Indices: 22899310--22899336 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22899300 CATTCAAACC
22899310 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
22899337 ATTCACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22899402 original size:67 final size:66
Alignment explanation
Indices: 22899329--22899534 Score: 265
Period size: 67 Copynumber: 3.1 Consensus size: 66
22899319 TATATATATA
* * *
22899329 TATATATAATTCACAACATTAAATTCAGCTCATAGAAATTGAAACATATATTCGAACCACATGTA
1 TATATATAATTCATAACATTAAATTCAGCTCAAAGAAATTGAAACATACATTCGAACCACATGTA
22899394 T
66 T
* * * *
22899395 GTATATATAATTCATAACATTAAGTTCAGCTCAAAGAATTTTGTAACATACATTCGAACCTCA--
1 -TATATATAATTCATAACATTAAATTCAGCTCAAAGAA-ATTGAAACATACATTCGAACCACATG
22899458 TA-
64 TAT
* * * *
22899460 TATATAAAATTCATAACATTAAATTCAACTCAAAGAAATTGAAAAATACATTCAAACCACATGTA
1 TATATATAATTCATAACATTAAATTCAGCTCAAAGAAATTGAAACATACATTCGAACCACATGTA
22899525 T
66 T
22899526 ATATATATA
1 -TATATATA
22899535 TATATTATAC
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
63 19 0.16
64 34 0.29
65 2 0.02
66 2 0.02
67 41 0.35
68 20 0.17
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.32
Consensus pattern (66 bp):
TATATATAATTCATAACATTAAATTCAGCTCAAAGAAATTGAAACATACATTCGAACCACATGTA
T
Found at i:22901901 original size:18 final size:18
Alignment explanation
Indices: 22901878--22901916 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
22901868 TGGGAAAATA
*
22901878 AGAAAGGGAATGGAAGAG
1 AGAAAGGGAATGAAAGAG
* *
22901896 AGAAAGTGAGTGAAAGAG
1 AGAAAGGGAATGAAAGAG
22901914 AGA
1 AGA
22901917 GAGATGTGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.41, T:0.08
Consensus pattern (18 bp):
AGAAAGGGAATGAAAGAG
Found at i:22905944 original size:20 final size:18
Alignment explanation
Indices: 22905909--22905963 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 18
22905899 ATTATCGTTC
* *
22905909 TTTTATTTTTCATATATATA
1 TTTTATTTTT--TTTATATT
22905929 TTTTATTTTTTTTATATT
1 TTTTATTTTTTTTATATT
22905947 TTCTCTATTTTTTTTAT
1 TT-T-TATTTTTTTTAT
22905964 TTCTGCCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.26
19 1 0.03
20 22 0.71
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTATTTTTTTTATATT
Found at i:22910292 original size:12 final size:12
Alignment explanation
Indices: 22910275--22910299 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22910265 GAAGCAAATG
22910275 AAAGTCGTAATA
1 AAAGTCGTAATA
22910287 AAAGTCGTAATA
1 AAAGTCGTAATA
22910299 A
1 A
22910300 TGAACAGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (12 bp):
AAAGTCGTAATA
Found at i:22914225 original size:44 final size:44
Alignment explanation
Indices: 22914177--22914400 Score: 130
Period size: 44 Copynumber: 5.1 Consensus size: 44
22914167 AGACACCAGC
*
22914177 CTTGCCTTCCTGGGTTGCAGCGGAGCAGGTTGAAAATAACAGAT
1 CTTGCCTTCCTGGGTTGCAGCGGAGCAGGTTGAAAATACCAGAT
* ** * * * * * *
22914221 CTTGCCATCCTGTATTGATAGCGAAGCAGATCGAAGACACCAG-T
1 CTTGCCTTCCTGGGTTG-CAGCGGAGCAGGTTGAAAATACCAGAT
* * * * ** * *
22914265 CTTTCCTCCCTAGGTTGCAGTGGAGCAGACTGAAGATAGCAGAT
1 CTTGCCTTCCTGGGTTGCAGCGGAGCAGGTTGAAAATACCAGAT
**** * * * * *
22914309 CTTGCCTTCCTGTACCGGCAGCGAAGCA-GATCAAAGACACCAG-C
1 CTTGCCTTCCTG-GGTTGCAGCGGAGCAGGTTGAAA-ATACCAGAT
* * *
22914353 CTTGCCTCCCTGGGTTGCAGCAGAGCAGGTTGAAAATAGCAGAT
1 CTTGCCTTCCTGGGTTGCAGCGGAGCAGGTTGAAAATACCAGAT
22914397 CTTG
1 CTTG
22914401 TTTTCCTGTA
Statistics
Matches: 123, Mismatches: 51, Indels: 12
0.66 0.27 0.06
Matches are distributed among these distances:
43 32 0.26
44 59 0.48
45 32 0.26
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (44 bp):
CTTGCCTTCCTGGGTTGCAGCGGAGCAGGTTGAAAATACCAGAT
Found at i:22914281 original size:88 final size:88
Alignment explanation
Indices: 22914118--22914845 Score: 750
Period size: 88 Copynumber: 8.3 Consensus size: 88
22914108 GAACAGATCA
* * * * *
22914118 TTGAAGATAGCAGATCTTGCCTTACTGTACCGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCC
1 TTGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCC
*
22914183 TTCCTGGGTTGCAGCGGAGCAGG
66 TCCCTGGGTTGCAGCGGAGCAGG
* * * * * *
22914206 TTGAAAATAACAGATCTTGCCATCCTGTATTGATAGCGAAGCAGATCGAAGACACCAGTCTTTCC
1 TTGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCC
* * *
22914271 TCCCTAGGTTGCAGTGGAGCAGA
66 TCCCTGGGTTGCAGCGGAGCAGG
* * * * *
22914294 CTGAAGATAGCAGATCTTGCCTTCCTGTACCGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCC
1 TTGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCC
*
22914359 TCCCTGGGTTGCAGCAGAGCAGG
66 TCCCTGGGTTGCAGCGGAGCAGG
** * * * *
22914382 TTGAAAATAGCAGATCTTGTTTTCCTGTACTAATAGCGAAGCAGATCGAAGACACTAGCCTTGCT
1 TTGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCC
* *
22914447 TCCCTGGGGTGGAGCGGAGCAGG
66 TCCCTGGGTTGCAGCGGAGCAGG
* * * * * *
22914470 TTAAAAATAGCAGATTTTGCCTTCTTGTACCGACAGTGAAGCAGATCAAAGACACCAGCCTTGCC
1 TTGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCC
*
22914535 TCCCTGGGTTGCAGCGAAGCAGG
66 TCCCTGGGTTGCAGCGGAGCAGG
* * ** * * * * *
22914558 TTGAAAATTGTAGATCTTATC-TCC-CTA-AG-CAGTAGTAGAGTAGATCGAAGACACTAGCCTT
1 TTGAAAATAGCAGATCTTGCCTTCCTGTACTGACAG-CG-A-AGCAGATCGAAGACACCAGCCTT
** * *
22914619 GCCTCCCTCAGTGGCAGCAGAGCAGG
63 GCCTCCCTGGGTTGCAGCGGAGCAGG
* * * *
22914645 TT-AAAGATAGCAGATCTTGCCTTCCTGTACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGC
1 TTGAAA-ATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGC
* * * *
22914709 CTTCCTCGGTGGCAGCAGAGCAGG
65 CTCCCTGGGTTGCAGCGGAGCAGG
** * * *
22914733 TT-AAAGATAGCAGATCTTGCCTTCCTGTACTGACAATGAAGCAGATTGAAGACACTAGCCTTTC
1 TTGAAA-ATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGC
* * *
22914797 CTCCCTCGGTGGCAGCGGAACAGG
65 CTCCCTGGGTTGCAGCGGAGCAGG
* *
22914821 TT-AAAGATAGTAGATCTTGTCTTCC
1 TTGAAA-ATAGCAGATCTTGCCTTCC
22914846 CATACTGGTG
Statistics
Matches: 535, Mismatches: 97, Indels: 16
0.83 0.15 0.02
Matches are distributed among these distances:
84 3 0.01
85 2 0.00
86 6 0.01
87 56 0.10
88 461 0.86
89 3 0.01
90 1 0.00
91 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (88 bp):
TTGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCC
TCCCTGGGTTGCAGCGGAGCAGG
Found at i:22914420 original size:176 final size:176
Alignment explanation
Indices: 22914121--22914845 Score: 861
Period size: 176 Copynumber: 4.1 Consensus size: 176
22914111 CAGATCATTG
* * *
22914121 AAGATAGCAGATCTTGCCTTACTGTACCGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
* * * * *
22914186 CTGGGTTGCAGCGGAGCAGGTTGAAAATAACAGATCTTGCCATCCTGTATTGATAGCGAAGCAGA
66 CTGGGTTGCAGCAGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGTACTAATAGCGAAGCAGA
* * * * * ** *
22914251 TCGAAGACACCAGTCTTTCCTCCCTAGGTTGCAGTGGAGCAGACTG
131 TCGAAGACACTAGCCTTGCCTCCCTAGGTGGCAGCGGAGCAGGTTA
*
22914297 AAGATAGCAGATCTTGCCTTCCTGTACCGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
**
22914362 CTGGGTTGCAGCAGAGCAGGTTGAAAATAGCAGATCTTGTTTTCCTGTACTAATAGCGAAGCAGA
66 CTGGGTTGCAGCAGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGTACTAATAGCGAAGCAGA
* *
22914427 TCGAAGACACTAGCCTTGCTTCCCTGGGGTGG-AGCGGAGCAGGTTA
131 TCGAAGACACTAGCCTTGCCTCCCT-AGGTGGCAGCGGAGCAGGTTA
* * * *
22914473 AAAATAGCAGATTTTGCCTTCTTGTACCGACAGTGAAGCAGATCAAAGACACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
* * ** * * * * *
22914538 CTGGGTTGCAGC-GAAGCAGGTTGAAAATTGTAGATCTTATCTCCCT-AAGC-AGTAG-TAGAGT
66 CTGGGTTGCAGCAG-AGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGTA-CTAATAGCGA-AGC
*
22914599 AGATCGAAGACACTAGCCTTGCCTCCCTCA-GTGGCAGCAGAGCAGGTTA
128 AGATCGAAGACACTAGCCTTGCCTCCCT-AGGTGGCAGCGGAGCAGGTTA
** * ** * *
22914648 AAGATAGCAGATCTTGCCTTCCTGTACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
* * * * **
22914713 CTCGGTGGCAGCAGAGCAGGTT-AAAGATAGCAGATCTTGCCTTCCTGTACTGACAATGAAGCAG
66 CTGGGTTGCAGCAGAGCAGGTTGAAA-ATAGCAGATCTTGCCTTCCTGTACTAATAGCGAAGCAG
* * * *
22914777 ATTGAAGACACTAGCCTTTCCTCCCTCGGTGGCAGCGGAACAGGTTA
130 ATCGAAGACACTAGCCTTGCCTCCCTAGGTGGCAGCGGAGCAGGTTA
* *
22914824 AAGATAGTAGATCTTGTCTTCC
1 AAGATAGCAGATCTTGCCTTCC
22914846 CATACTGGTG
Statistics
Matches: 471, Mismatches: 67, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
174 8 0.02
175 138 0.29
176 320 0.68
177 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (176 bp):
AAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
CTGGGTTGCAGCAGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGTACTAATAGCGAAGCAGA
TCGAAGACACTAGCCTTGCCTCCCTAGGTGGCAGCGGAGCAGGTTA
Found at i:22914665 original size:44 final size:44
Alignment explanation
Indices: 22914616--22914758 Score: 139
Period size: 44 Copynumber: 3.2 Consensus size: 44
22914606 AGACACTAGC
*
22914616 CTTGCCTCCCTCAGTGGCAGCAGAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTTCCTCAGTGGCAGCAGAGCAGGTTAAAGATAGCAGAT
* * ** * * * * *
22914660 CTTGCCTTCCTGTACTAACAG-TGAAGCAGATTGAAGACA-CTAG-C
1 CTTGCCTTCCT-CAGTGGCAGCAG-AGCAGGTTAAAGATAGC-AGAT
*
22914704 CTTGCCTTCCTCGGTGGCAGCAGAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTTCCTCAGTGGCAGCAGAGCAGGTTAAAGATAGCAGAT
22914748 CTTGCCTTCCT
1 CTTGCCTTCCT
22914759 GTACTGACAA
Statistics
Matches: 73, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
43 18 0.25
44 36 0.49
45 19 0.26
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (44 bp):
CTTGCCTTCCTCAGTGGCAGCAGAGCAGGTTAAAGATAGCAGAT
Found at i:22914698 original size:263 final size:265
Alignment explanation
Indices: 22914121--22914838 Score: 840
Period size: 263 Copynumber: 2.7 Consensus size: 265
22914111 CAGATCATTG
* *** * *
22914121 AAGATAGCAGATCTTGCCTTACTGTACCGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTTC
* * * * * * * *
22914186 CTGGGTTGCAGCGGAGCAGGTTGAAAATAACAGATCTTGCCATCCTGTATTGATAGCGAAGCAGA
66 CTGGGGTGGAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGA
* * * ** * * *
22914251 TCGAAGACACCAGTCTTTCCTCCCTAGGTTGCAGTGGAGCAGACTGAAGATAGCAGATCTTGCCT
131 TCGAAGACACCAGCCTTTCCTCCCTAGGTTGCAGCGAAGCAGGTTGAAAATAGTAGATCTTACCT
* * * * ** *
22914316 TCCTGTACCGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAGCAG
196 CCCTGAACCAGCAGAGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTCAGTGGCAGCAGAGCAG
22914381 GTTGA
261 GTTGA
** *
22914386 AA-ATAGCAGATCTTGTTTTCCTGTACTAATAGCGAAGCAGATCGAAGACACTAGCCTTG-CTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTT-
* * *
22914449 CCTGGGGTGGAGCGGAGCAGGTTAAAAATAGCAGATTTTGCCTTCTTGTACCGACAGTGAAGCAG
65 CCTGGGGTGGAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAG
* * * * *
22914514 ATCAAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGAAGCAGGTTGAAAATTGTAGATCTTATC
130 ATCGAAGACACCAGCCTTTCCTCCCTAGGTTGCAGCGAAGCAGGTTGAAAATAGTAGATCTTACC
* * * * *
22914579 TCCCT-AAGCAGTAGTAG-AGTAGATCGAAGACACTAGCCTTGCCTCCCTCAGTGGCAGCAGAGC
195 TCCCTGAACCAGCAG-AGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTCAGTGGCAGCAGAGC
22914642 AGGTT-A
259 AGGTTGA
* *
22914648 AAGATAGCAGATCTTGCCTTCCTGTACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTTC
* * * *
22914713 CT-CGGTGGCAGCAGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGACAATGAAGCAG
66 CTGGGGTGG-AGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAG
* * * *
22914777 ATTGAAGACACTAGCCTTTCCTCCCTCGGTGGCAGCGGAA-CAGGTT-AAAGATAGTAGATCTT
130 ATCGAAGACACCAGCCTTTCCTCCCTAGGTTGCAGC-GAAGCAGGTTGAAA-ATAGTAGATCTT
22914839 GTCTTCCCAT
Statistics
Matches: 382, Mismatches: 64, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
262 11 0.03
263 204 0.53
264 165 0.43
265 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (265 bp):
AAGATAGCAGATCTTGCCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTTC
CTGGGGTGGAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGA
TCGAAGACACCAGCCTTTCCTCCCTAGGTTGCAGCGAAGCAGGTTGAAAATAGTAGATCTTACCT
CCCTGAACCAGCAGAGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTCAGTGGCAGCAGAGCAG
GTTGA
Found at i:22914924 original size:44 final size:44
Alignment explanation
Indices: 22914824--22915445 Score: 441
Period size: 44 Copynumber: 14.1 Consensus size: 44
22914814 GAACAGGTTA
* ** * **
22914824 AAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGG-CATGAAGTAGATCG
* *
22914869 AAGAT-GACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATTG
1 AAGATAG-CAGATCTTGTCTTCATATATTGGCATGAAGTAGATCG
* * * * *
22914913 AAGATAGCAGATCCTGTATTCCTATATTGGTA-GAAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGCATG-AAGTAGATCG
*
22914957 AAGAT-GCAGATCTTGTCTTCCTATACTGGTGGC--GAAGTAGATCAG
1 AAGATAGCAGATCTTGTCTTCATATA-T--TGGCATGAAGTAGATC-G
* * * * *
22915002 AA-A-A-CGGATCTTGTCTTTATGTATTGGCGTGAAGTAGATTG
1 AAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCG
* * * * * *
22915043 AAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCG
* ** *
22915087 AAGAT-GCAGATCTTATCTTCCCATACTGGTGGC--GAAGTAGATCA
1 AAGATAGCAGATCTTGTCTT--CATA-TATTGGCATGAAGTAGATCG
* * * * * *
22915131 AAGAAAACAGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCG
* * * * *
22915175 AAGATAGCAGATCATGTCTTCTTATATTGGTAGGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCG
* ** *
22915219 GAGAT-GCAGATCTTGTCTTCCCATACTGGTGGC--GAAGTAGATCA
1 AAGATAGCAGATCTTGTCTT--CATA-TATTGGCATGAAGTAGATCG
* *
22915263 AAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCG
* * * * * * *
22915307 AGGATAGCAGATCCTGTCTTCCTATAATGGTAGCGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGCA-TGAAGTAGATCG
**
22915352 AAGAT-GCAGATCTTGTCTTCCCATACTGGTGGC--GAAGTAGATCG
1 AAGATAGCAGATCTTGTCTT--CATA-TATTGGCATGAAGTAGATCG
* * * *
22915396 AAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCG
22915440 AAGATA
1 AAGATA
22915446 TCAAATTTTG
Statistics
Matches: 450, Mismatches: 95, Indels: 65
0.74 0.16 0.11
Matches are distributed among these distances:
40 4 0.01
41 3 0.01
42 26 0.06
43 69 0.15
44 242 0.54
45 88 0.20
46 14 0.03
47 4 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (44 bp):
AAGATAGCAGATCTTGTCTTCATATATTGGCATGAAGTAGATCG
Found at i:22914968 original size:132 final size:131
Alignment explanation
Indices: 22914832--22915445 Score: 953
Period size: 132 Copynumber: 4.7 Consensus size: 131
22914822 TAAAGATAGT
* *
22914832 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATGACAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA-AACAGATCTTGTCTTCATGTATT
* * * *
22914897 GGCATGAAGTAGATTGAAGATAGCAGATCCTGTATTCCTATATTGGTAGAAAGTGGATCGAAGAT
65 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
22914962 GC
130 GC
* * *
22914964 AGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATC--AGAAAACGGATCTTGTCTTTATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG-AAACAGATCTTGTCTTCATGTATT
* *
22915027 GGCGTGAAGTAGATTGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
65 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
22915092 GC
130 GC
* * * *
22915094 AGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAACAGATCTTATCTTCGTGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG-AAACAGATCTTGTCTTCATGTATT
* * *
22915159 GGCGTGAAGTAGATCGAAGATAGCAGATCATGTCTTCTTATATTGGTAGGAAGTGGATCGGAGAT
65 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
22915224 GC
130 GC
*
22915226 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA-CAGATCTTGTCTTCATGTATT
* * *
22915291 GGCATGAAGTAGATCGAGGATAGCAGATCCTGTCTTCCTATAATGGTAGCGAAGTGGATCGAAGA
65 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGA
22915356 TGC
129 TGC
*
22915359 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA-CAGATCTTGTCTTCATGTATT
22915424 GGCGTGAAGTAGATCGAAGATA
65 GGCGTGAAGTAGATCGAAGATA
22915446 TCAAATTTTG
Statistics
Matches: 444, Mismatches: 33, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
130 119 0.27
131 4 0.01
132 221 0.50
133 100 0.23
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (131 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAACAGATCTTGTCTTCATGTATTG
GCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATG
C
Found at i:22915247 original size:262 final size:264
Alignment explanation
Indices: 22914832--22915445 Score: 989
Period size: 262 Copynumber: 2.3 Consensus size: 264
22914822 TAAAGATAGT
* ** *
22914832 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATGACAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTTCATGTATT
* * *
22914897 GGCATGAAGTAGATTGAAGATAGCAGATCCTGTATTCCTATATTGGTAGAAAGTGGATCGAAGAT
66 GGCGTGAAGTAGATCGAAGATAGCAGATCATGTATTCCTATATTGGTAGAAAGTGGATCGAAGAT
* * *
22914962 GCAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATC-AGAAAACGGATCTTGTCTTTATGTAT
131 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAGAAAACAGATCTTGTCTTCATGTAT
* * *
22915026 TGGCGTGAAGTAGATTGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG
196 TGGCATGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATAATGGTAGCGAAGTGGATCGAAG
22915090 ATGC
261 ATGC
* * *
22915094 AGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAACAGATCTTATCTTCGTGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTTCATGTATT
* * * *
22915159 GGCGTGAAGTAGATCGAAGATAGCAGATCATGTCTTCTTATATTGGTAGGAAGTGGATCGGAGAT
66 GGCGTGAAGTAGATCGAAGATAGCAGATCATGTATTCCTATATTGGTAGAAAGTGGATCGAAGAT
*
22915224 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTA
131 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC-AAGAAAACAGATCTTGTCTTCATGTA
* *
22915289 TTGGCATGAAGTAGATCGAGGATAGCAGATCCTGTCTTCCTATAATGGTAGCGAAGTGGATCGAA
195 TTGGCATGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATAATGGTAGCGAAGTGGATCGAA
22915354 GATGC
260 GATGC
*
22915359 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTTCATGTATT
22915424 GGCGTGAAGTAGATCGAAGATA
66 GGCGTGAAGTAGATCGAAGATA
22915446 TCAAATTTTG
Statistics
Matches: 322, Mismatches: 27, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
262 153 0.48
264 68 0.21
265 101 0.31
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (264 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTTCATGTATT
GGCGTGAAGTAGATCGAAGATAGCAGATCATGTATTCCTATATTGGTAGAAAGTGGATCGAAGAT
GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAGAAAACAGATCTTGTCTTCATGTAT
TGGCATGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATAATGGTAGCGAAGTGGATCGAAG
ATGC
Found at i:22920647 original size:44 final size:44
Alignment explanation
Indices: 22920599--22920694 Score: 147
Period size: 44 Copynumber: 2.2 Consensus size: 44
22920589 ATATCTCAAG
*
22920599 GTCCATGTTTATAACATGGCAATTAAGGAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
** *
22920643 GTCCATGTTTATAATGTGGCAATTAAGAAAGAATTGATGGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
22920687 GTACCATG
1 GT-CCATG
22920695 GTTGATCAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 42 0.89
45 5 0.11
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
Found at i:22920772 original size:50 final size:50
Alignment explanation
Indices: 22920712--22921302 Score: 941
Period size: 50 Copynumber: 11.8 Consensus size: 50
22920702 AATGTCAACA
*
22920712 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* *
22920762 CAAGATGAGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
*
22920812 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* *
22920862 CAAGATGAGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
*
22920912 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* *
22920962 CAAGATGAGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
*
22921012 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* *
22921062 CAAGATGAGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
*
22921112 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* *
22921162 CAAGATGAGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* * * *
22921212 CGAGATGAGAGGTCCTC-CGTAAGACCATGTCTGGGACATGGCATGGGCAT
1 CGAGATGAGAGGTCC-CATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* * ** * *
22921262 CGATATAAGAACTCCCATGTAAGACCATATCTGGGATATGG
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGG
22921303 TATTGGTAGT
Statistics
Matches: 499, Mismatches: 40, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
49 1 0.00
50 497 1.00
51 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (50 bp):
CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
Found at i:22921297 original size:100 final size:100
Alignment explanation
Indices: 22920712--22921253 Score: 1050
Period size: 100 Copynumber: 5.4 Consensus size: 100
22920702 AATGTCAACA
22920712 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
22920777 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
66 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
22920812 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
22920877 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
66 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
22920912 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
22920977 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
66 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
22921012 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
22921077 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
66 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
22921112 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
22921177 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
66 CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
* *
22921212 CGAGATGAGAGGTCCTC-CGTAAGACCATGTCTGGGACATGGC
1 CGAGATGAGAGGTCC-CATGTAAGACCATGTCTGGGCCATGGC
22921254 ATGGGCATCG
Statistics
Matches: 439, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
100 438 1.00
101 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (100 bp):
CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGCCATGGCGTTGGCACCAAGATGAGAGGTCC
CATATAAGACCATGTCTGGGACATGGCGTTGGCAC
Found at i:22921892 original size:44 final size:44
Alignment explanation
Indices: 22921829--22921960 Score: 264
Period size: 44 Copynumber: 3.0 Consensus size: 44
22921819 TTACTAATGA
22921829 TTGTTATTTTACATATGAACTTACTAAGCTTTATAAGCTTACCT
1 TTGTTATTTTACATATGAACTTACTAAGCTTTATAAGCTTACCT
22921873 TTGTTATTTTACATATGAACTTACTAAGCTTTATAAGCTTACCT
1 TTGTTATTTTACATATGAACTTACTAAGCTTTATAAGCTTACCT
22921917 TTGTTATTTTACATATGAACTTACTAAGCTTTATAAGCTTACCT
1 TTGTTATTTTACATATGAACTTACTAAGCTTTATAAGCTTACCT
22921961 ATTTCCTTTC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 88 1.00
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (44 bp):
TTGTTATTTTACATATGAACTTACTAAGCTTTATAAGCTTACCT
Found at i:22928265 original size:9 final size:9
Alignment explanation
Indices: 22928250--22928281 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
22928240 TTTTATCTAT
22928250 TTATGTAAG
1 TTATGTAAG
*
22928259 CTATGTAAG
1 TTATGTAAG
22928268 TTATGTAAG
1 TTATGTAAG
22928277 TTATG
1 TTATG
22928282 ATCCAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.44
Consensus pattern (9 bp):
TTATGTAAG
Found at i:22928329 original size:9 final size:9
Alignment explanation
Indices: 22928317--22928360 Score: 79
Period size: 9 Copynumber: 4.9 Consensus size: 9
22928307 ATGTTTATAC
22928317 AAGTTATGT
1 AAGTTATGT
*
22928326 AAGTTATAT
1 AAGTTATGT
22928335 AAGTTATGT
1 AAGTTATGT
22928344 AAGTTATGT
1 AAGTTATGT
22928353 AAGTTATG
1 AAGTTATG
22928361 ATTATCATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.43
Consensus pattern (9 bp):
AAGTTATGT
Found at i:22928338 original size:18 final size:18
Alignment explanation
Indices: 22928311--22928360 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
22928301 CTTTAAATGT
*
22928311 TTATACAAGTTATGTAAG
1 TTATATAAGTTATGTAAG
22928329 TTATATAAGTTATGTAAG
1 TTATATAAGTTATGTAAG
*
22928347 TTATGTAAGTTATG
1 TTATATAAGTTATG
22928361 ATTATCATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.44
Consensus pattern (18 bp):
TTATATAAGTTATGTAAG
Found at i:22928387 original size:13 final size:13
Alignment explanation
Indices: 22928369--22928395 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22928359 TGATTATCAT
22928369 CTTTAAATTTTAA
1 CTTTAAATTTTAA
22928382 CTTTAAATTTTAA
1 CTTTAAATTTTAA
22928395 C
1 C
22928396 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:22931156 original size:22 final size:22
Alignment explanation
Indices: 22931113--22931156 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
22931103 AATATATAAT
*
22931113 TAAATTAATCAAAATTTACAAA
1 TAAATTAATCAAAAATTACAAA
*
22931135 TAAA-TAATCCAAAAATTGCAAA
1 TAAATTAAT-CAAAAATTACAAA
22931157 CAACCGCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAATTAATCAAAAATTACAAA
Found at i:22932830 original size:50 final size:50
Alignment explanation
Indices: 22932752--22932901 Score: 255
Period size: 50 Copynumber: 3.0 Consensus size: 50
22932742 AATTAATCTC
22932752 ATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTT
1 ATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTT
* * *
22932802 ATCTCGGTGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTC
1 ATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTT
* *
22932852 ATCTTGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGTGACCTCTT
1 ATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTT
22932902 TACCCAAATG
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 93 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (50 bp):
ATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTT
Found at i:22937940 original size:11 final size:12
Alignment explanation
Indices: 22937924--22937956 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
22937914 TCACAAAATG
22937924 ATTTCGT-GAAA
1 ATTTCGTCGAAA
22937935 ATTTCGTTCGAAA
1 ATTTCG-TCGAAA
22937948 ATTTCGTCG
1 ATTTCGTCG
22937957 TTTAGGCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 6 0.30
12 4 0.20
13 10 0.50
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.39
Consensus pattern (12 bp):
ATTTCGTCGAAA
Found at i:22938597 original size:56 final size:56
Alignment explanation
Indices: 22938522--22938636 Score: 196
Period size: 56 Copynumber: 2.1 Consensus size: 56
22938512 ATTTGAGTAA
*
22938522 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAG-TTCATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATT-ATG
*
22938578 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
22938634 AGA
1 AGA
22938637 NNNNNNNNNN
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
56 54 0.96
57 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (56 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
Found at i:22939989 original size:41 final size:41
Alignment explanation
Indices: 22939903--22939989 Score: 95
Period size: 41 Copynumber: 2.1 Consensus size: 41
22939893 CTTTGCGGTG
* * *
22939903 TTTTTCTCATAAAAGCCGCTAATGCTTGATCTTTTGCTGCG
1 TTTTTCTCATAAAAGCCGCTAACGCTTGACCTTTTGCTGCA
* * * *
22939944 TTTTTCTCATAAACGCTGCTACCGCTTTACCTATTT-CTGCA
1 TTTTTCTCATAAAAGCCGCTAACGCTTGACCT-TTTGCTGCA
22939985 TTTTT
1 TTTTT
22939990 TTGTTAGCAC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 35 0.92
42 3 0.08
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.45
Consensus pattern (41 bp):
TTTTTCTCATAAAAGCCGCTAACGCTTGACCTTTTGCTGCA
Found at i:22946362 original size:41 final size:41
Alignment explanation
Indices: 22946317--22946426 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
22946307 CATTGAATGT
* * **
22946317 AAGGGGTTACTAAGTGAAGATTCCTTGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
*
22946358 AAGGGGTCGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
*
22946399 AAGGGGTTGCCAAGTGCAGATTCCCCGA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGA
22946427 GGGGTTGCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
Found at i:22946439 original size:26 final size:26
Alignment explanation
Indices: 22946400--22946452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22946390 CTGATCAAAA
22946400 AGGGGTTGCCAAGTGCAGATTCCCCG
1 AGGGGTTGCCAAGTGCAGATTCCCCG
* **
22946426 AGGGGTTGCTAAGTGTTGATTCCCCG
1 AGGGGTTGCCAAGTGCAGATTCCCCG
22946452 A
1 A
22946453 ATTATTGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.23, G:0.34, T:0.25
Consensus pattern (26 bp):
AGGGGTTGCCAAGTGCAGATTCCCCG
Found at i:22954733 original size:27 final size:27
Alignment explanation
Indices: 22954703--22954766 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
22954693 TTTCATTTTT
***
22954703 ATGCAATTTAGTTTGTAGGTCCAAATC
1 ATGCAATTTAGTCCATAGGTCCAAATC
22954730 ATGCAATTTAGTCCATAGGTCCAAATC
1 ATGCAATTTAGTCCATAGGTCCAAATC
*
22954757 ATACAATTTA
1 ATGCAATTTA
22954767 ACCATTTTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (27 bp):
ATGCAATTTAGTCCATAGGTCCAAATC
Found at i:22955252 original size:5 final size:5
Alignment explanation
Indices: 22955213--22955239 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
22955203 TTATCATACC
22955213 TTTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TT
22955240 AAAAAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTTAA
Found at i:22956536 original size:20 final size:19
Alignment explanation
Indices: 22956508--22956555 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
22956498 TGATGTGTTA
*
22956508 AAATGATTTTAAATTGGTT
1 AAATCATTTTAAATTGGTT
* *
22956527 GAAATCATTTTGACTTGGTT
1 -AAATCATTTTAAATTGGTT
22956547 AGAATCATT
1 A-AATCATT
22956556 CTAACTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (19 bp):
AAATCATTTTAAATTGGTT
Found at i:22960673 original size:272 final size:271
Alignment explanation
Indices: 22960179--22960727 Score: 992
Period size: 272 Copynumber: 2.0 Consensus size: 271
22960169 ACTCTAGGAG
* *
22960179 CTTGTTTTAAACCATATAAAGCTTTTGAAATTTTGAAAACATGGTTTGGAAATTTTAGATCTTCA
1 CTTGTTTTAAACCATATAAAGCTTTTGAAAGTTTGAAAACATGGTTTGCAAATTTTAGATCTTCA
* * **
22960244 AAACTTGGTGGTTGTTCAACATATGCTTCTTTATTTACAAAACCATTTAGAAAAATACTTTTTAC
66 AAACTTAGTGGTTGTTCAACAGACACTTCTTTATTTACAAAACCATTTAGAAAAATACTTTTTAC
22960309 ATCCATTTGATATAATTTGAAGTCATTAAAGCATGCAAAAGCTAAAAGCATTCTAGTGGCTTCCA
131 ATCCATTTGATATAATTTGAAGTCATTAAAGCATGCAAAAGCTAAAAGCATTCTAGTGGCTTCCA
22960374 TCCTAGCTACTGGAGCATAAGTTTCATCATAATCTATTCCTTCCTCTTGACTGTAACCTTGAGCA
196 TCCTAGCTACTGGAGCATAAGTTTCATCATAATCTATTCCTTCCTCTTGACTGTAACCTTGAGCA
22960439 ACAAGTCTAGC
261 ACAAGTCTAGC
*
22960450 CTTGTTTTCAAACCATATAAAGCTTTTGAAAGTTTGAAAATATGGTTTGCAAATTTTAGATCTTC
1 CTTGTTTT-AAACCATATAAAGCTTTTGAAAGTTTGAAAACATGGTTTGCAAATTTTAGATCTTC
*
22960515 AAAACTTAGTGGTTGTTCAACAGACACTTCTTTATTTATAAAACCATTTAGAAAAATACTTTTTA
65 AAAACTTAGTGGTTGTTCAACAGACACTTCTTTATTTACAAAACCATTTAGAAAAATACTTTTTA
22960580 CATCCATTTGATATAATTTGAAGTCATTAAAGCATGCAAAAGCTAAAAGCATTCTAGTGGCTTCC
130 CATCCATTTGATATAATTTGAAGTCATTAAAGCATGCAAAAGCTAAAAGCATTCTAGTGGCTTCC
*
22960645 ATCCTAGCTA-TGGGAGCATAAGTTTCATCATAATCTATTCCTTCCTCTTGAGTGTAACCTTGAG
195 ATCCTAGCTACT-GGAGCATAAGTTTCATCATAATCTATTCCTTCCTCTTGACTGTAACCTTGAG
22960709 CAACAAGTCTAGC
259 CAACAAGTCTAGC
22960722 CTTGTT
1 CTTGTT
22960728 CCTCACTATG
Statistics
Matches: 267, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
271 9 0.03
272 258 0.97
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (271 bp):
CTTGTTTTAAACCATATAAAGCTTTTGAAAGTTTGAAAACATGGTTTGCAAATTTTAGATCTTCA
AAACTTAGTGGTTGTTCAACAGACACTTCTTTATTTACAAAACCATTTAGAAAAATACTTTTTAC
ATCCATTTGATATAATTTGAAGTCATTAAAGCATGCAAAAGCTAAAAGCATTCTAGTGGCTTCCA
TCCTAGCTACTGGAGCATAAGTTTCATCATAATCTATTCCTTCCTCTTGACTGTAACCTTGAGCA
ACAAGTCTAGC
Found at i:22979208 original size:20 final size:20
Alignment explanation
Indices: 22979175--22979214 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22979165 CCAACCCTCA
*
22979175 AAACTTTTTATTTTCCCCCT
1 AAACTTTTTATTTTCACCCT
22979195 AAAC-TTTTATTTTTCACCCT
1 AAACTTTTTA-TTTTCACCCT
22979215 TTACCCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.50
Consensus pattern (20 bp):
AAACTTTTTATTTTCACCCT
Found at i:22989740 original size:93 final size:90
Alignment explanation
Indices: 22989630--22989834 Score: 234
Period size: 91 Copynumber: 2.2 Consensus size: 90
22989620 ACTTTTTCAA
* * * * * *
22989630 AAAAAAAACAATTAAGCCCCTACTTTTTTTTTTTGCATTCATTTGGGTATTTGAACTTTTAAAAT
1 AAAAAAAACAATTAAGCCCCTAC--ATTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAAT
22989695 GCATCTAAAAAAGCCCACAAACCTTTTC
64 GCATC-AAAAAAGCCCACAAACCTTTTC
* *
22989723 AAAAAAAGCAATTAAGCCCCTACATTTTTTTTACACTCAATTGGGTGCTTGAACTTTCAAAATGC
1 AAAAAAAACAATTAAGCCCCTACATTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGC
* *
22989788 ATC-AAAAAGACCCTA-AAACTTTTTTTT
66 ATCAAAAAAG-CCC-ACAAAC--CTTTTC
22989815 AAAAGAAAACAATTAAGCCC
1 AAAA-AAAACAATTAAGCCC
22989835 TTGGTTTTCT
Statistics
Matches: 96, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
89 6 0.06
90 7 0.07
91 39 0.41
92 8 0.08
93 36 0.38
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (90 bp):
AAAAAAAACAATTAAGCCCCTACATTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGC
ATCAAAAAAGCCCACAAACCTTTTC
Found at i:22989891 original size:25 final size:26
Alignment explanation
Indices: 22989847--22989898 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
22989837 GGTTTTCTTA
*
22989847 AAAATTAGAAAAAAATTATAAAAATT
1 AAAATTAGAAAAAAACTATAAAAATT
* *
22989873 AAAATTA-ATAAAAACTATAAATATT
1 AAAATTAGAAAAAAACTATAAAAATT
22989898 A
1 A
22989899 TTAAATGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (26 bp):
AAAATTAGAAAAAAACTATAAAAATT
Found at i:22990111 original size:27 final size:27
Alignment explanation
Indices: 22990059--22990111 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
22990049 GACGTTATTA
**
22990059 TATTTTTAATAAATTTTAATTTTTTTG
1 TATTTTTAATAAATTTTAATAATTTTG
* *
22990086 TATTTTTATTAAATTTTGATAATTTT
1 TATTTTTAATAAATTTTAATAATTTT
22990112 TCTAAAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (27 bp):
TATTTTTAATAAATTTTAATAATTTTG
Found at i:22990333 original size:92 final size:91
Alignment explanation
Indices: 22990162--22990383 Score: 290
Period size: 91 Copynumber: 2.4 Consensus size: 91
22990152 AATTTTTAAT
* * * *
22990162 AAGAGTAGGGGATTAATTGCTTTTTTGAAAAATTTTAAGGGTCTTTTTGATCCATTTGAAAGTTC
1 AAGAGAAGGGGCTTAATTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATACATTTGAAAGTTC
22990227 AAGTACCTAATTGAGTG-AAAAAAAA
66 AAGTACCTAATTGAGTGAAAAAAAAA
* *
22990252 AAGAGAAGGGGCTTAATTGCTTTTCTTGAAGAAGTTTGAGGG-CATTTTTGATACATTTTGAAAG
1 AAGAGAAGGGGCTTAATTGCTTTT-TTGAAAAAGTTTAAGGGTC-TTTTTGATACA-TTTGAAAG
*
22990316 TTCAAGT-GCTCAATTGAGTGCAAAAAAAAA
63 TTCAAGTACCT-AATTGAGTG-AAAAAAAAA
*
22990346 AAAAGAA-GGGCTTAATTGCTTTTTTTGAAAAAGTTTAA
1 AAGAGAAGGGGCTTAATTGC-TTTTTTGAAAAAGTTTAA
22990384 AGACTTTTTA
Statistics
Matches: 115, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
90 23 0.20
91 26 0.23
92 24 0.21
93 24 0.21
94 18 0.16
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.34
Consensus pattern (91 bp):
AAGAGAAGGGGCTTAATTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATACATTTGAAAGTTC
AAGTACCTAATTGAGTGAAAAAAAAA
Found at i:22990392 original size:92 final size:90
Alignment explanation
Indices: 22990168--22990392 Score: 276
Period size: 93 Copynumber: 2.5 Consensus size: 90
22990158 TAATAAGAGT
* * * *
22990168 AGGGGATTAATTGC-TTTTTTGAAAAATTTTAAGGGTCTTTTTGATCCATTTGAAAGTTCAAGTA
1 AGGGGCTTAATTGCTTTTTTTGAAAAAGTTTAA-GGACTTTTTGATACATTTGAAAGTTCAAGTA
*
22990232 CCTAATTGAGTGAAAAAAAAAAGAGA
65 CCTAATTGAGTGAAAAAAAAAAAAGA
* * * *
22990258 AGGGGCTTAATTGCTTTTCTTGAAGAAGTTTGAGGGCATTTTTGATACATTTTGAAAGTTCAAGT
1 AGGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGAC-TTTTTGATACA-TTTGAAAGTTCAAGT
*
22990323 -GCTCAATTGAGTGCAAAAAAAAAAAAAGA
64 ACCT-AATTGAGTG--AAAAAAAAAAAAGA
*
22990352 A-GGGCTTAATTGCTTTTTTTGAAAAAGTTTAAAGACTTTTT
1 AGGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGACTTTTT
22990393 ACAGCCTTAA
Statistics
Matches: 115, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
90 16 0.14
91 26 0.23
92 29 0.25
93 30 0.26
94 14 0.12
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (90 bp):
AGGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGACTTTTTGATACATTTGAAAGTTCAAGTAC
CTAATTGAGTGAAAAAAAAAAAAGA
Found at i:22995648 original size:13 final size:13
Alignment explanation
Indices: 22995632--22995662 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
22995622 TTCAACCTAA
22995632 GTGCCTAACCAAT
1 GTGCCTAACCAAT
22995645 GTGCCTAACCAAT
1 GTGCCTAACCAAT
22995658 GTGCC
1 GTGCC
22995663 CTCATTGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (13 bp):
GTGCCTAACCAAT
Found at i:22996523 original size:44 final size:45
Alignment explanation
Indices: 22996425--22996537 Score: 156
Period size: 44 Copynumber: 2.5 Consensus size: 45
22996415 AAGTGCTGGA
**
22996425 ATAGTATCTTTCAACTATGGTCTTGATTCATTCACATTTAATGCC
1 ATAGTATCTTTCAACTATGGTCTTGACCCATTCACATTTAATGCC
* * * **
22996470 ATAGCATCTTTCAACTAGGGTCTT-ACCCGTTCAGGTTTAATGCC
1 ATAGTATCTTTCAACTATGGTCTTGACCCATTCACATTTAATGCC
22996514 ATAGTATCTTTCAACTATGGTCTT
1 ATAGTATCTTTCAACTATGGTCTT
22996538 TCTTATTTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 37 0.63
45 22 0.37
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (45 bp):
ATAGTATCTTTCAACTATGGTCTTGACCCATTCACATTTAATGCC
Found at i:22998912 original size:142 final size:141
Alignment explanation
Indices: 22998725--22998993 Score: 296
Period size: 141 Copynumber: 1.9 Consensus size: 141
22998715 AGATAAAATG
* * *
22998725 TTTTTCTATAAAAGTCCAGGTAATTCCCTGTAAAACCCCAAGTTTTTGCTTTTA-CTAGGGAAAA
1 TTTTCCTATAAAAG-CCAGGTAATTCCCTGTAAAACCCCAAG-TTTTCCTTTTATC-AGGAAAAA
*** * * * *
22998789 GTTTAAAATTAATTCCAGAAA-ATGA-AAAAAATTAAAGGAAATTAAAAAGACAAAATGATTTTT
63 AAGTAAAACTAATTCCA-AAAGA-GAGAAAAAAATAAAGAAAATTAAAAAGA-AAAATGACTTTT
22998852 CCTATAAAGACCTAAGC
125 CCTATAAAGACCTAAGC
* * **
22998869 TTTTCCTATAAAA-CCAGTTAA-TCCCTTGTAAAACCTCGGGTTTTCCTTTTATCAGGAAAAAAA
1 TTTTCCTATAAAAGCCAGGTAATTCCC-TGTAAAACCCCAAGTTTTCCTTTTATCAGGAAAAAAA
* *
22998932 GTAAAACTAATTCTAAAAGAGAGAAAAAAATAAAGAAAATTAAAAAGATAAATGACTTTTCC
65 GTAAAACTAATTCCAAAAGAGAGAAAAAAATAAAGAAAATTAAAAAGAAAAATGACTTTTCC
22998994 ACATAAAACT
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
140 17 0.16
141 57 0.54
142 19 0.18
144 12 0.11
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (141 bp):
TTTTCCTATAAAAGCCAGGTAATTCCCTGTAAAACCCCAAGTTTTCCTTTTATCAGGAAAAAAAG
TAAAACTAATTCCAAAAGAGAGAAAAAAATAAAGAAAATTAAAAAGAAAAATGACTTTTCCTATA
AAGACCTAAGC
Found at i:23003064 original size:46 final size:46
Alignment explanation
Indices: 23003011--23003174 Score: 197
Period size: 46 Copynumber: 3.6 Consensus size: 46
23003001 TAATATTCCT
* * *
23003011 GTATTCTCGAGTCTACAACATATGCAGGAACTTAG-ACACTAATCAC
1 GTATTCTCGAGTCCACAACATATGCAGGAGCTTGGAAC-CTAATCAC
* * *
23003057 GTATTCTCGAGTCCGCAACATATGCAAGAGCTTGGAACCTAATCAT
1 GTATTCTCGAGTCCACAACATATGCAGGAGCTTGGAACCTAATCAC
** * *
23003103 GTATTCTCGAGTCCGTAACATATGTAGGAGCTTGGAACCTATTC-C
1 GTATTCTCGAGTCCACAACATATGCAGGAGCTTGGAACCTAATCAC
*
23003148 TGTAATCTCGAGTCCACAACATATGCA
1 -GTATTCTCGAGTCCACAACATATGCA
23003175 AAAGCTCGGA
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
46 99 0.98
47 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (46 bp):
GTATTCTCGAGTCCACAACATATGCAGGAGCTTGGAACCTAATCAC
Found at i:23005113 original size:25 final size:25
Alignment explanation
Indices: 23005082--23005133 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
23005072 AGACAAGGAA
*
23005082 AATGATGGGAGTGAGGAGATGGATG
1 AATGATGGGAATGAGGAGATGGATG
23005107 AATGATGGGAATGAGGAGATGGATG
1 AATGATGGGAATGAGGAGATGGATG
23005132 AA
1 AA
23005134 GAGGACAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.44, T:0.19
Consensus pattern (25 bp):
AATGATGGGAATGAGGAGATGGATG
Found at i:23012252 original size:9 final size:9
Alignment explanation
Indices: 23012238--23012295 Score: 73
Period size: 9 Copynumber: 6.4 Consensus size: 9
23012228 GTTAAACGAA
23012238 TCGAGTTAT
1 TCGAGTTAT
23012247 TCGAGTTAAT
1 TCGAGTT-AT
*
23012257 TAG-GTTAT
1 TCGAGTTAT
*
23012265 TCGAGTTAA
1 TCGAGTTAT
*
23012274 TCGAGTTGT
1 TCGAGTTAT
23012283 TCGAGTTAT
1 TCGAGTTAT
23012292 TCGA
1 TCGA
23012296 ATCAACTCGA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 4 0.10
9 33 0.80
10 4 0.10
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:23012363 original size:9 final size:9
Alignment explanation
Indices: 23012348--23012384 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
23012338 TAATTTTTTG
23012348 AATTCGAAT
1 AATTCGAAT
*
23012357 AACTCGAAT
1 AATTCGAAT
23012366 AATTCGAAT
1 AATTCGAAT
23012375 AATTCGAAT
1 AATTCGAAT
23012384 A
1 A
23012385 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:23015587 original size:19 final size:19
Alignment explanation
Indices: 23015565--23015664 Score: 96
Period size: 19 Copynumber: 5.3 Consensus size: 19
23015555 ACAAAGGGAT
23015565 TAAAAACAAATTAAATGAA
1 TAAAAACAAATTAAATGAA
* * * *
23015584 TAAAACCAAA-CAAAGGGAT
1 TAAAAACAAATTAAA-TGAA
23015603 TAAAAACAAATTAAATGAA
1 TAAAAACAAATTAAATGAA
* * * *
23015622 TAAAACCAAA-CAAAGGGAT
1 TAAAAACAAATTAAA-TGAA
23015641 TAAAAACAAATTAAATGAA
1 TAAAAACAAATTAAATGAA
23015660 TAAAA
1 TAAAA
23015665 CAGTGCAGGA
Statistics
Matches: 61, Mismatches: 16, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
18 6 0.10
19 49 0.80
20 6 0.10
ACGTcount: A:0.65, C:0.09, G:0.09, T:0.17
Consensus pattern (19 bp):
TAAAAACAAATTAAATGAA
Found at i:23015591 original size:38 final size:38
Alignment explanation
Indices: 23015548--23015665 Score: 236
Period size: 38 Copynumber: 3.1 Consensus size: 38
23015538 ATTATTGAAG
23015548 AAACCAAACAAAGGGATTAAAAACAAATTAAATGAATA
1 AAACCAAACAAAGGGATTAAAAACAAATTAAATGAATA
23015586 AAACCAAACAAAGGGATTAAAAACAAATTAAATGAATA
1 AAACCAAACAAAGGGATTAAAAACAAATTAAATGAATA
23015624 AAACCAAACAAAGGGATTAAAAACAAATTAAATGAATA
1 AAACCAAACAAAGGGATTAAAAACAAATTAAATGAATA
23015662 AAAC
1 AAAC
23015666 AGTGCAGGAA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 80 1.00
ACGTcount: A:0.64, C:0.11, G:0.10, T:0.15
Consensus pattern (38 bp):
AAACCAAACAAAGGGATTAAAAACAAATTAAATGAATA
Found at i:23022603 original size:17 final size:17
Alignment explanation
Indices: 23022583--23022617 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23022573 ATGCATAATC
*
23022583 ACAGTTCATTCAATATA
1 ACAGTTCATACAATATA
23022600 ACAGTTCATACAATATA
1 ACAGTTCATACAATATA
23022617 A
1 A
23022618 TAATTCATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (17 bp):
ACAGTTCATACAATATA
Found at i:23022624 original size:17 final size:17
Alignment explanation
Indices: 23022587--23022625 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
23022577 ATAATCACAG
* *
23022587 TTCATTCAATATAACAG
1 TTCATACAATATAACAA
*
23022604 TTCATACAATATAATAA
1 TTCATACAATATAACAA
23022621 TTCAT
1 TTCAT
23022626 CCATACCACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (17 bp):
TTCATACAATATAACAA
Found at i:23030553 original size:2 final size:2
Alignment explanation
Indices: 23030546--23030578 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
23030536 TACGGTAAAG
*
23030546 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23030579 AGTTGCTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:23035369 original size:28 final size:27
Alignment explanation
Indices: 23035336--23035398 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
23035326 ATATGCCATG
*
23035336 TTAAAAAAT-AATTCAAAATTTATAAAAA
1 TTAAAAAATAAAATCAAAA-TTA-AAAAA
*
23035364 TTAAAAATTAAAATCAAAATTAAAAAA
1 TTAAAAAATAAAATCAAAATTAAAAAA
23035391 TATAAAAA
1 T-TAAAAA
23035399 GTTCATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 6 0.19
28 17 0.55
29 8 0.26
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (27 bp):
TTAAAAAATAAAATCAAAATTAAAAAA
Found at i:23035370 original size:29 final size:27
Alignment explanation
Indices: 23035339--23035398 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
23035329 TGCCATGTTA
*
23035339 AAAAAT-AATTCAAAATTTATAAAAAT-T
1 AAAAATAAAATCAAAA-TTA-AAAAATAT
23035366 AAAAATTAAAATCAAAATTAAAAAATAT
1 AAAAA-TAAAATCAAAATTAAAAAATAT
23035394 AAAAA
1 AAAAA
23035399 GTTCATAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 11 0.38
28 10 0.34
29 8 0.28
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (27 bp):
AAAAATAAAATCAAAATTAAAAAATAT
Found at i:23037412 original size:24 final size:23
Alignment explanation
Indices: 23037363--23037412 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
23037353 TACTAAGTAA
*
23037363 TATTTATTATGTAAAATATGTAT
1 TATTTATTATGTAAAATATATAT
* * *
23037386 TATTTATTTATTTAAAATTTATTT
1 TATTTA-TTATGTAAAATATATAT
23037410 TAT
1 TAT
23037413 AATTGAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (23 bp):
TATTTATTATGTAAAATATATAT
Found at i:23038726 original size:15 final size:16
Alignment explanation
Indices: 23038700--23038729 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23038690 ATTAGTTAGT
23038700 TTTAAGTTTTGTTTTG
1 TTTAAGTTTTGTTTTG
23038716 TTTAA-TTTTGTTTT
1 TTTAAGTTTTGTTTT
23038730 ACTTTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (16 bp):
TTTAAGTTTTGTTTTG
Found at i:23041684 original size:3 final size:3
Alignment explanation
Indices: 23041676--23041708 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
23041666 AATCTACCCA
23041676 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
23041709 GTCTCAACTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:23042331 original size:15 final size:16
Alignment explanation
Indices: 23042313--23042346 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
23042303 TTCTTTAATA
23042313 TTATTAAATTTAT-TT
1 TTATTAAATTTATATT
23042328 TTATTAAATTTATATT
1 TTATTAAATTTATATT
23042344 TTA
1 TTA
23042347 ACAATGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATTAAATTTATATT
Found at i:23042953 original size:25 final size:25
Alignment explanation
Indices: 23042903--23042953 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
23042893 TATTGATAAC
*
23042903 TTAATATATAGATAATATATACATT
1 TTAATATATAGATAATATATAAATT
* *
23042928 TTAATAT-TATATATTATTATAAATT
1 TTAATATATAGATAATA-TATAAATT
23042953 T
1 T
23042954 ATTTTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
TTAATATATAGATAATATATAAATT
Found at i:23058031 original size:25 final size:25
Alignment explanation
Indices: 23057995--23058067 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
23057985 ACGAGACTTA
*
23057995 AATTGCTCACATGAGCTATGAATGT
1 AATTACTCACATGAGCTATGAATGT
* * * *
23058020 AATTCCTTACATGAGCTGTGAACGT
1 AATTACTCACATGAGCTATGAATGT
*
23058045 AATTACTCACATGAGATATGAAT
1 AATTACTCACATGAGCTATGAAT
23058068 TGGGACTTTA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (25 bp):
AATTACTCACATGAGCTATGAATGT
Found at i:23061249 original size:52 final size:51
Alignment explanation
Indices: 23061179--23061276 Score: 160
Period size: 52 Copynumber: 1.9 Consensus size: 51
23061169 CTCATCTTAA
* *
23061179 TTTTACCCTAGTAAAATTTTGATGATTTTACCCCCGATAAAATTTTGATGG
1 TTTTACCCTAGTAAAATTTTAATGATTTTACCCCAGATAAAATTTTGATGG
*
23061230 TTTTACCCTTAGTAAAATTTTAATGATTTTACCCTAGATAAAATTTT
1 TTTTACCC-TAGTAAAATTTTAATGATTTTACCCCAGATAAAATTTT
23061277 AAGAAAATTC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
51 8 0.19
52 35 0.81
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (51 bp):
TTTTACCCTAGTAAAATTTTAATGATTTTACCCCAGATAAAATTTTGATGG
Found at i:23061277 original size:26 final size:25
Alignment explanation
Indices: 23061178--23061278 Score: 130
Period size: 26 Copynumber: 3.9 Consensus size: 25
23061168 TCTCATCTTA
*
23061178 ATTTTACCCTAGTAAAATTTTGATG
1 ATTTTACCCTAGTAAAATTTTAATG
** *
23061203 ATTTTACCCCCGATAAAATTTTGATG
1 ATTTTACCCTAG-TAAAATTTTAATG
*
23061229 GTTTTACCCTTAGTAAAATTTTAATG
1 ATTTTACCC-TAGTAAAATTTTAATG
23061255 ATTTTACCCTAGATAAAATTTTAA
1 ATTTTACCCTAG-TAAAATTTTAA
23061279 GAAAATTCGT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
25 13 0.20
26 52 0.79
27 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.43
Consensus pattern (25 bp):
ATTTTACCCTAGTAAAATTTTAATG
Found at i:23070714 original size:14 final size:14
Alignment explanation
Indices: 23070695--23070723 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
23070685 TCAGTTTGAT
23070695 TATTTTTAGTTTTA
1 TATTTTTAGTTTTA
23070709 TATTTTTAGTTTTA
1 TATTTTTAGTTTTA
23070723 T
1 T
23070724 TTTAGTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (14 bp):
TATTTTTAGTTTTA
Found at i:23072427 original size:43 final size:43
Alignment explanation
Indices: 23072378--23072476 Score: 171
Period size: 43 Copynumber: 2.3 Consensus size: 43
23072368 GAATCGTACT
* *
23072378 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTGAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
*
23072421 TTTAGCGTCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
23072464 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
23072477 ATGGGTTCTT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.34
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
Found at i:23073560 original size:44 final size:43
Alignment explanation
Indices: 23073498--23073584 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
23073488 GCAGCCTGCT
*
23073498 TCAGTTAAAAGCATAATTGTTTTGCTCATCGGACTATTTCAAA
1 TCAGTTAAAAGCATAATTGTTTCGCTCATCGGACTATTTCAAA
*
23073541 TCAGTTAAAAAGCTTAATTGTTTCGCTCATCGGACTATTTCAAA
1 TCAGTT-AAAAGCATAATTGTTTCGCTCATCGGACTATTTCAAA
23073585 CAACAGGTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 6 0.15
44 35 0.85
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (43 bp):
TCAGTTAAAAGCATAATTGTTTCGCTCATCGGACTATTTCAAA
Found at i:23079517 original size:5 final size:5
Alignment explanation
Indices: 23079509--23079534 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
23079499 GAGATGGAAT
23079509 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
23079535 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:23080261 original size:9 final size:9
Alignment explanation
Indices: 23080244--23080274 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
23080234 TCGAGTTGAT
23080244 TCGAATAAC
1 TCGAATAAC
*
23080253 TCGATTAAC
1 TCGAATAAC
23080262 TCGAATAAC
1 TCGAATAAC
23080271 TCGA
1 TCGA
23080275 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:23082969 original size:29 final size:30
Alignment explanation
Indices: 23082936--23083001 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
23082926 AGGGGGATGA
* * *
23082936 AAAATGGCA-TTTTGTTAAGTTTGTAACGG
1 AAAATGGCAGCTTCGTTAAGTCTGTAACGG
* *
23082965 AAAATGGTAGCTTCGTTATGTCTGTAACGG
1 AAAATGGCAGCTTCGTTAAGTCTGTAACGG
23082995 AAAATGG
1 AAAATGG
23083002 TTAGTGGTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 8 0.26
30 23 0.74
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.33
Consensus pattern (30 bp):
AAAATGGCAGCTTCGTTAAGTCTGTAACGG
Found at i:23083421 original size:16 final size:16
Alignment explanation
Indices: 23083400--23083469 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
23083390 TTTGGTTCGC
* *
23083400 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
* **
23083416 TGTATTGGGTTAGAGG
1 TGTAATGGAATAGAGG
*
23083432 TGTAATAGAATAGAGG
1 TGTAATGGAATAGAGG
23083448 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
23083464 TGTAAT
1 TGTAAT
23083470 AGCAAATCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:23083446 original size:32 final size:32
Alignment explanation
Indices: 23083410--23083471 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
23083400 TGTATTGGAT
* **
23083410 TAGAGGTGTATTGGGTTAGAGGTGTAATAGAA
1 TAGAGGTGTAATGGAATAGAGGTGTAATAGAA
23083442 TAGAGGTGTAATGGAATAGAGGTGTAATAG
1 TAGAGGTGTAATGGAATAGAGGTGTAATAG
23083472 CAAATCAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.37, T:0.29
Consensus pattern (32 bp):
TAGAGGTGTAATGGAATAGAGGTGTAATAGAA
Found at i:23083553 original size:39 final size:43
Alignment explanation
Indices: 23083448--23083557 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
23083438 AGAATAGAGG
23083448 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
23083493 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
23083533 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
23083558 TAATGAAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:23083790 original size:20 final size:21
Alignment explanation
Indices: 23083751--23083790 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
23083741 AATTTACTAA
*
23083751 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
23083772 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
23083791 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:23083922 original size:26 final size:28
Alignment explanation
Indices: 23083892--23083955 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
23083882 TAATACTATA
*
23083892 AAATATAATTTAA-AATAAT-TATTATT
1 AAATATAATTTAATAATAATATATAATT
23083918 AAATATAATTTAATAATAATATATAATT
1 AAATATAATTTAATAATAATATATAATT
* *
23083946 TAATAAAATT
1 AAATATAATT
23083956 CTTAGTATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.39
27 6 0.18
28 14 0.42
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATATAATTTAATAATAATATATAATT
Found at i:23084017 original size:120 final size:120
Alignment explanation
Indices: 23083702--23084138 Score: 735
Period size: 120 Copynumber: 3.7 Consensus size: 120
23083692 CTGTTATAAA
*
23083702 ATATAATTTAATAAAATTGTT-A-A-TAAATATTCTTATATGAATTTACTAATAAAATCATAATA
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAC---TAAAATCATAATA
23083764 TATAATAC--TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAAT
63 TATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAAT
23083820 ATATAATTTAAT--AATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
*
23083883 AATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAATAAT
66 AATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAAT
* *
23083938 ATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
*
23084003 AATACTATAAAATATAATTTAACATAATTATTATTAAATATAATTTAATAAAAAT
66 AATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAAT
*
23084058 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
*
23084123 AATACTATATAATATA
66 AATACTATAAAATATA
23084139 GATTAATAAT
Statistics
Matches: 302, Mismatches: 10, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
116 27 0.09
117 1 0.00
118 72 0.24
119 23 0.08
120 179 0.59
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
AATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAAT
Found at i:23084121 original size:59 final size:59
Alignment explanation
Indices: 23083701--23084121 Score: 258
Period size: 59 Copynumber: 7.1 Consensus size: 59
23083691 ACTGTTATAA
*
23083701 AATATAATTTAATAAAATTGTT-A-A-TAAATATTCTTATATGAATTTACTAATAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAA-TT--TAATAAAATCAT
* * * * * *
23083760 AATAT-ATAATACTAAAATATAATTTAA-AATAATTATTATTAAATAT-AATTTAATAAAA--AT
1 AATATAAT-TTAATAAAAT-T--CTTAATATTAAATATTCTT--ATATGAATTTAATAAAATCAT
*
23083820 -ATATAATTTAAT--AATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCAT
* * * * * *
23083876 AATAT-ATAATACTATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTTAATAATA
1 AATATAAT-TTA--ATAAAATTCTTAATATT-AAAT-ATTCTTATATGAATTTAA--TAA-AATC
23083936 AT
58 AT
* * *
23083938 -ATATAATTTAATAAAATTCTTAGTATGAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCAT
* * * * *
23083996 AATAT-ATAATACTATAAAATATAATTTAACA-TAATTATTATTAAATAT-AATTTAATAAAA--
1 AATATAAT-TTA--ATAAAAT-T--CTTAATATTAAATATTCTT--ATATGAATTTAATAAAATC
23084056 AT
58 AT
23084058 -ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCAT
23084116 AATATA
1 AATATA
23084122 TAATACTATA
Statistics
Matches: 277, Mismatches: 41, Indels: 88
0.68 0.10 0.22
Matches are distributed among these distances:
53 4 0.01
54 15 0.05
55 14 0.05
56 22 0.08
57 18 0.06
58 14 0.05
59 63 0.23
60 21 0.08
61 37 0.13
62 23 0.08
63 10 0.04
64 26 0.09
65 6 0.02
66 4 0.01
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (59 bp):
AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCAT
Found at i:23092310 original size:15 final size:15
Alignment explanation
Indices: 23092290--23092319 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23092280 CATATTCAAA
*
23092290 CCATCATTTTACCTT
1 CCATCATTCTACCTT
23092305 CCATCATTCTACCTT
1 CCATCATTCTACCTT
23092320 ATCAAGCCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (15 bp):
CCATCATTCTACCTT
Found at i:23093107 original size:49 final size:51
Alignment explanation
Indices: 23093001--23093113 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 51
23092991 GTACATGTAT
* * * *
23093001 GCTCATATGAGCT-ATGAATCGGTATGCTCCCACGAGCTGGAAATCGGTAA
1 GCTCATACGAGCTGATGAATCGATAAGCTCCCACGAGCTGAAAATCGGTAA
* *
23093051 GCTCATACGAGCTGA-GAATCGATAAGCTCTCATGAGCT-AAAATCGGTAA
1 GCTCATACGAGCTGATGAATCGATAAGCTCCCACGAGCTGAAAATCGGTAA
*
23093100 GCTCATACCAGCTG
1 GCTCATACGAGCTG
23093114 TGGTGTGTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
49 23 0.42
50 31 0.56
51 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (51 bp):
GCTCATACGAGCTGATGAATCGATAAGCTCCCACGAGCTGAAAATCGGTAA
Found at i:23093112 original size:24 final size:25
Alignment explanation
Indices: 23093017--23093113 Score: 99
Period size: 25 Copynumber: 3.9 Consensus size: 25
23093007 ATGAGCTATG
* ** *
23093017 AATCGGTATGCTCCCACGAGCTGGA
1 AATCGGTAAGCTCATACGAGCTGAA
*
23093042 AATCGGTAAGCTCATACGAGCTGAG
1 AATCGGTAAGCTCATACGAGCTGAA
* *
23093067 AATCGATAAGCTC-TCATGAGCT-AA
1 AATCGGTAAGCTCAT-ACGAGCTGAA
*
23093091 AATCGGTAAGCTCATACCAGCTG
1 AATCGGTAAGCTCATACGAGCTG
23093114 TGGTGTGTCT
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
24 19 0.33
25 39 0.67
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.22
Consensus pattern (25 bp):
AATCGGTAAGCTCATACGAGCTGAA
Found at i:23098316 original size:13 final size:13
Alignment explanation
Indices: 23098274--23098310 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
23098264 ACAAAGCTGA
23098274 ATAAGATTAAATC
1 ATAAGATTAAATC
23098287 ATAAGATTAAATC
1 ATAAGATTAAATC
23098300 ATAAGATTAAA
1 ATAAGATTAAA
23098311 ATATAACTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.57, C:0.05, G:0.08, T:0.30
Consensus pattern (13 bp):
ATAAGATTAAATC
Found at i:23100112 original size:39 final size:40
Alignment explanation
Indices: 23099953--23100132 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
23099943 AGTTATTGTA
* **
23099953 TGAATTCACATACATGCTATTGTTTGTACTTTGGTACCCC
1 TGAATGCACATACATGCTCCTGTTTGTACTTTGGTACCCC
* * *
23099993 TGAATGCACAAACGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATGCACATACATGCTCCTGTTTGTACTTTGGTACCCC
* * * * **
23100033 TAAATGCACATACGTGC-CCTTGTTTGTAC-TTCGAATTCC
1 TGAATGCACATACATGCTCC-TGTTTGTACTTTGGTACCCC
* *
23100072 TGAATGCACATACATGCTCCTATTT-TACTTTGGTACTCC
1 TGAATGCACATACATGCTCCTGTTTGTACTTTGGTACCCC
* *
23100111 TGAAGGCATATACATGCTCCTG
1 TGAATGCACATACATGCTCCTG
23100133 AGTTTATTCT
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
38 3 0.03
39 53 0.46
40 60 0.52
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (40 bp):
TGAATGCACATACATGCTCCTGTTTGTACTTTGGTACCCC
Found at i:23100965 original size:54 final size:54
Alignment explanation
Indices: 23100862--23100965 Score: 122
Period size: 54 Copynumber: 1.9 Consensus size: 54
23100852 CTAGTGTTTT
* *
23100862 AAGTCAATGAGTTACACGGACTGTCACACAGCCTGGCACACGGCAGTGTGTGGC
1 AAGTCAATGAGTTACACGGACTGGCACACAGCCTGGCACACGACAGTGTGTGGC
* * * *
23100916 AAGTCAGA-GAGTTACATGGCCTGGCACACAGTCT-GCGACACGACTGTGTG
1 AAGTCA-ATGAGTTACACGGACTGGCACACAGCCTGGC-ACACGACAGTGTG
23100966 ACCCTACTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
53 2 0.05
54 39 0.93
55 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.30, T:0.19
Consensus pattern (54 bp):
AAGTCAATGAGTTACACGGACTGGCACACAGCCTGGCACACGACAGTGTGTGGC
Found at i:23106252 original size:15 final size:16
Alignment explanation
Indices: 23106220--23106254 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
23106210 ATTATCATTC
23106220 CAAGCCCTCCACTTTT
1 CAAGCCCTCCACTTTT
*
23106236 CAAGCCTTCCA-TTTT
1 CAAGCCCTCCACTTTT
23106251 CAAG
1 CAAG
23106255 AACCTAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.23, C:0.37, G:0.09, T:0.31
Consensus pattern (16 bp):
CAAGCCCTCCACTTTT
Found at i:23109476 original size:2 final size:2
Alignment explanation
Indices: 23109469--23109496 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23109459 ACATATCTAC
23109469 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
23109497 TGGAAGGACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:23111128 original size:6 final size:6
Alignment explanation
Indices: 23111109--23111147 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
23111099 TATAAATGAA
*
23111109 TTCATT TCTCATT TTCATT TTCATT TTCATT TCCATT TT
1 TTCATT T-TCATT TTCATT TTCATT TTCATT TTCATT TT
23111148 GAAAAAACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (6 bp):
TTCATT
Found at i:23111251 original size:58 final size:56
Alignment explanation
Indices: 23111120--23111259 Score: 146
Period size: 57 Copynumber: 2.5 Consensus size: 56
23111110 TCATTTCTCA
*
23111120 TTTT-CATTT-TCATTTTCATTTCCATTTTGAAAAAACCAAATTCATTTCCAAATG
1 TTTTCCATTTCTCATTTTCATTTTCATTTTGAAAAAACCAAATTCATTTCCAAATG
* * *
23111174 -ATTCCATTTTCTCCATTTTCATTTTCATTTTGGAGAAAACCATAA-TCATTTCCTGAATG
1 TTTTCCA-TTTCT-CATTTTCATTTTCATTTT-GAAAAAACCA-AATTCATTTCC-AAATG
* *
23111233 TTTTCCATTTCTCTTTTTC-TATTCATT
1 TTTTCCATTTCTCATTTTCATTTTCATT
23111260 CTGTTCATTT
Statistics
Matches: 71, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
53 2 0.03
54 2 0.03
55 3 0.04
56 1 0.01
57 24 0.34
58 23 0.32
59 11 0.15
60 5 0.07
ACGTcount: A:0.26, C:0.20, G:0.05, T:0.49
Consensus pattern (56 bp):
TTTTCCATTTCTCATTTTCATTTTCATTTTGAAAAAACCAAATTCATTTCCAAATG
Found at i:23123040 original size:33 final size:34
Alignment explanation
Indices: 23122986--23123068 Score: 116
Period size: 33 Copynumber: 2.5 Consensus size: 34
23122976 GACATAAAGC
* *
23122986 TTAAC-TTATAATTCAATAATTTAGATTTAATAG
1 TTAACTTTATAATTTAATAATTTAGATTTAATAA
23123019 TTAACTTTATAATTTAA-AATTTAGATTTAATAA
1 TTAACTTTATAATTTAATAATTTAGATTTAATAA
* *
23123052 TGAACTTCATAATTTAA
1 TTAACTTTATAATTTAA
23123069 GCATTAAAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
33 35 0.78
34 10 0.22
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (34 bp):
TTAACTTTATAATTTAATAATTTAGATTTAATAA
Found at i:23132139 original size:12 final size:11
Alignment explanation
Indices: 23132118--23132151 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
23132108 AATACACACA
23132118 AAAAAAAAAATG
1 AAAAAAAAAA-G
23132130 AAAAAGAAAAAG
1 AAAAA-AAAAAG
23132142 AAAAAAAAAA
1 AAAAAAAAAA
23132152 AAAGAGGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 11 0.52
13 5 0.24
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAAG
Done.