Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 75 of 141
Found at i:24707056 original size:18 final size:18
Alignment explanation
Indices: 24707033--24707121 Score: 101
Period size: 18 Copynumber: 4.8 Consensus size: 18
24707023 ATATATAAAT
*
24707033 TTTAAGTAATGTAATACA
1 TTTAAGTAATGTAATATA
24707051 TTTAAGTAATGTAAGTTATAAA
1 TTTAAGTAATGTAA--TAT--A
*
24707073 TTTTAGTAA-GTAATATA
1 TTTAAGTAATGTAATATA
24707090 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
*
24707108 TTTTAGTAA-GTAAT
1 TTTAAGTAATGTAAT
24707122 GTAATATATA
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
17 14 0.23
18 30 0.48
19 3 0.05
20 2 0.03
21 4 0.06
22 9 0.15
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.44
Consensus pattern (18 bp):
TTTAAGTAATGTAATATA
Found at i:24707083 original size:17 final size:17
Alignment explanation
Indices: 24707061--24707121 Score: 86
Period size: 17 Copynumber: 3.5 Consensus size: 17
24707051 TTTAAGTAAT
* *
24707061 GTAAGTTATAAATTTTA
1 GTAAGTAATATATTTTA
*
24707078 GTAAGTAATATATTTAA
1 GTAAGTAATATATTTTA
24707095 GTAATGTAATATATTTTA
1 GTAA-GTAATATATTTTA
24707113 GTAAGTAAT
1 GTAAGTAAT
24707122 GTAATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
17 23 0.59
18 16 0.41
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.44
Consensus pattern (17 bp):
GTAAGTAATATATTTTA
Found at i:24707093 original size:39 final size:37
Alignment explanation
Indices: 24707025--24707121 Score: 135
Period size: 39 Copynumber: 2.6 Consensus size: 37
24707015 TTAAATATAT
24707025 ATATAAATTTTAAGTAATGTAATACATTTAAGTAATGTA
1 ATATAAATTTT-AGTAA-GTAATACATTTAAGTAATGTA
*
24707064 AGTTATAAATTTTAGTAAGTAATATATTTAAGTAATGTA
1 A--TATAAATTTTAGTAAGTAATACATTTAAGTAATGTA
24707103 ATAT--ATTTTAGTAAGTAAT
1 ATATAAATTTTAGTAAGTAAT
24707122 GTAATATATA
Statistics
Matches: 55, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 15 0.27
37 3 0.05
39 22 0.40
40 5 0.09
41 10 0.18
ACGTcount: A:0.44, C:0.01, G:0.11, T:0.43
Consensus pattern (37 bp):
ATATAAATTTTAGTAAGTAATACATTTAAGTAATGTA
Found at i:24707146 original size:105 final size:106
Alignment explanation
Indices: 24707018--24707230 Score: 281
Period size: 105 Copynumber: 2.0 Consensus size: 106
24707008 AAAAATTTTA
* *
24707018 AATATATATATAAATTTTAAGTAATGTAATACATTTAAGTAATGTAAGTT-A-TAAATTTTAGTA
1 AATATATATATAAACTTTAAGTAA-GTAATACATTTAAGTAATAT-AGTTAAGTAAATTTTAGTA
*
24707081 AGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGT
64 AGTAATATATTTAAGTAATGTAATATATTTCAGTAAGTAATGT
* ** *
24707124 AATATATACT-TAAACTTT-AGTAAGTCATGTATTTAAGTAATATATTTAAGTAAATTTTAGTAA
1 AATATATA-TATAAACTTTAAGTAAGTAATACATTTAAGTAATATAGTTAAGTAAATTTTAGTAA
* * *
24707187 GTAATGTATTTAAGTTATGTAATATATTTCGGTAAGTAATGT
65 GTAATATATTTAAGTAATGTAATATATTTCAGTAAGTAATGT
24707229 AA
1 AA
24707231 GTAATGTAAT
Statistics
Matches: 94, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
103 3 0.03
104 17 0.18
105 58 0.62
106 15 0.16
107 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.43
Consensus pattern (106 bp):
AATATATATATAAACTTTAAGTAAGTAATACATTTAAGTAATATAGTTAAGTAAATTTTAGTAAG
TAATATATTTAAGTAATGTAATATATTTCAGTAAGTAATGT
Found at i:24707206 original size:13 final size:13
Alignment explanation
Indices: 24707144--24707207 Score: 60
Period size: 13 Copynumber: 4.8 Consensus size: 13
24707134 TAAACTTTAG
*
24707144 TAAGTCATGTATT
1 TAAGTAATGTATT
*
24707157 TAAGTAATATATT
1 TAAGTAATGTATT
24707170 TAAGTAAAT-T-TT
1 TAAGT-AATGTATT
24707182 AGTAAGTAATGTATT
1 --TAAGTAATGTATT
*
24707197 TAAGTTATGTA
1 TAAGTAATGTA
24707208 ATATATTTCG
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
12 2 0.05
13 30 0.70
14 9 0.21
15 2 0.05
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (13 bp):
TAAGTAATGTATT
Found at i:24707259 original size:105 final size:104
Alignment explanation
Indices: 24707069--24707269 Score: 248
Period size: 105 Copynumber: 1.9 Consensus size: 104
24707059 ATGTAAGTTA
* *
24707069 TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAATATATACT
1 TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTCAGTAAGTAATGTAATATATA-G
* * *
24707134 TAAACTTTAGTAAGTCATGTATTTAAGTAATATATTTAAG
65 TAAACTATAGAAAATCATGTATTTAAGTAATATATTTAAG
* * *
24707174 TAAATTTTAGTAAGTAATGTATTTAAGTTATGTAATATATTTCGGTAAGTAATGTAAGTA-AT-G
1 TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTCAGTAAGTAATGTAA-TATATAG
24707237 TAATA-TATAGCGGAAAAT-ATGTATTTAAGTAAT
65 TAA-ACTATA---GAAAATCATGTATTTAAGTAAT
24707270 GTACGTTATA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
103 6 0.07
104 1 0.01
105 70 0.84
106 6 0.07
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.42
Consensus pattern (104 bp):
TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTCAGTAAGTAATGTAATATATAGT
AAACTATAGAAAATCATGTATTTAAGTAATATATTTAAG
Found at i:24707942 original size:78 final size:79
Alignment explanation
Indices: 24707842--24708103 Score: 421
Period size: 78 Copynumber: 3.4 Consensus size: 79
24707832 TGAAGAGCAG
24707842 CTTACCTAAATACGAGCAGTAACAAATGCA-CAAAAATTTCCAAGCCATTCAAATGTTGATAAAA
1 CTTACCTAAATACGAGCAGTAACAAATGCACCAAAAATTTCCAAGCCATTCAAATGTTGATAAAA
24707906 ATAAAATCAGCAAA
66 ATAAAATCAGCAAA
* *
24707920 CTTACCTAAATACGAGCAGTAACAAATGGTTAATCC-ACAATTT----GCCATTCAAATGTTGAT
1 CTTACCTAAATACGAGCAGTAACAAAT-G--CA-CCAAAAATTTCCAAGCCATTCAAATGTTGAT
24707980 AAAAATAAAATCAGCAAA
62 AAAAATAAAATCAGCAAA
24707998 CTTACCTAAATACGAGCAGTAACAAATGCACCAAAAA-TTCCAAGCCATTCAAATGTTGATAAAA
1 CTTACCTAAATACGAGCAGTAACAAATGCACCAAAAATTTCCAAGCCATTCAAATGTTGATAAAA
24708062 ATAAAATCAGCAAA
66 ATAAAATCAGCAAA
24708076 CTTACCTAAATACGAGCAGTAACAAATG
1 CTTACCTAAATACGAGCAGTAACAAATG
24708104 GTTAATCCAC
Statistics
Matches: 170, Mismatches: 4, Indels: 20
0.88 0.02 0.10
Matches are distributed among these distances:
74 4 0.02
75 4 0.02
77 1 0.01
78 152 0.89
79 1 0.01
81 1 0.01
82 6 0.04
83 1 0.01
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.23
Consensus pattern (79 bp):
CTTACCTAAATACGAGCAGTAACAAATGCACCAAAAATTTCCAAGCCATTCAAATGTTGATAAAA
ATAAAATCAGCAAA
Found at i:24709670 original size:337 final size:335
Alignment explanation
Indices: 24708694--24709816 Score: 1176
Period size: 338 Copynumber: 3.3 Consensus size: 335
24708684 CGTTTTTTGC
* * * *
24708694 AAAAA-CGCCACTAAAAATTAAAGTTC-AAACCGAAACGACGCCGTTTAATTAAGCTTTAATGCA
1 AAAAAGCGCCACTAAAAATTAAAGTTCTAATCCGAAACGGCACCGTTTTATTAAGCTTTAATGCA
* * * * * * * *
24708757 CAGTTCTGGCATTTTCTGTAAAAACACCAGTAAAATTTAATTTGCTTAAGCAAAACGGGGTCGTT
66 CAGTTCTGGCGTTTTCTGTTAAAACGCCACTAAAAATTAATTTGCTTAAGCTAAACGAGAT-GTT
* * *
24708822 TAGACAATATTTTAAGTCA-TTTTGCGGTGTTTCGTGCAAAAACGCCACTATAAATTAAGAGAAA
130 TAGACAATATTTTAAGTCACTTTTGCGGCGTTTCGTGCAAAAACGCCACTAAAAATTAAAAGAAA
* * * * * *
24708886 CGGCGCCATTGGATTAATTTAGAGAAAATTCTAAGTTAAAAAAC-TAGTACAGAAATGACGTCAT
195 CGGCGCCGTTGAATTAATATAGAGAAAATGCTAAGTTAAAAAACGT-GTACAGAAACGACGTCGT
* * * *** * * *
24708950 TGAGACAAAATTTTAAGACAATTTTGCGGCAAATCCTGGACAAACACCGCTATTGCTTGTACATT
259 TTAGCCAAAATTTTAAGACACTTTTGCGGCGTTTCTTGAACAAACGCCGCTATTGCTTGTACATT
* *
24709015 CGCGGCGTTTTCT
324 AGCAGCG-TTTCT
* * *
24709028 AAAAAGCACCACTAAAATTTAAAGTTCTAATCCGAAACGG-AGCCATTTTATTAAGCTTTAATGC
1 AAAAAGCGCCACTAAAAATTAAAGTTCTAATCCGAAACGGCA-CCGTTTTATTAAGCTTTAATGC
* * * * **
24709092 ACATTTCTGGTGTTTTCTGCTAAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGAAGCCGT
65 ACAGTTCTGGCGTTTTCTGTTAAAACGCCACTAAAAATTAATTTGCTTAAGCTAAACG-AGATGT
* * * * *
24709157 TTAGGCAATATTTTATGTTACTTTTTGCGGCGTTTTGTGTAAAAACGCCAC-AAGAAATTAAAAG
129 TTAGACAATATTTTAAGTCAC-TTTTGCGGCGTTTCGTGCAAAAACGCCACTAA-AAATTAAAAG
* * *
24709221 AAACGGCGCCGTTGAATTAATATAGAGAAAATGCTAAG-TATAAAAGCGTGTACAGAGACGGCGT
192 AAACGGCGCCGTTGAATTAATATAGAGAAAATGCTAAGTTA-AAAAACGTGTACAGAAACGACGT
* * *
24709285 CGTTTA-CCAAAAATTTTAAGACACTTTTGCGACGTTTATTGAACAAACGCCGCTATAGCTTGTA
256 CGTTTAGCC-AAAATTTTAAGACACTTTTGCGGCGTTTCTTGAACAAACGCCGCTATTGCTTGTA
* * *
24709349 TATTTGCAGTGTTTCT
320 CATTAGCAGCGTTTCT
* * * *
24709365 AAAGAAGCGCCAC-AAAGAATTAAGGTTCTAATCCGAAACGGCACTGTTTTGTTAAGATTTAATG
1 AAA-AAGCGCCACTAAA-AATTAAAGTTCTAATCCGAAACGGCACCGTTTTATTAAGCTTTAATG
* * * *
24709429 CACATTTCTGGCGTTTTCCT-TTAAAACGCCACTAAAAATTAATTTGCTTAAGTTAGACGTCGAT
64 CACAGTTCTGGCGTTTT-CTGTTAAAACGCCACTAAAAATTAATTTGCTTAAGCTAAACG-AGAT
* * * **
24709493 GTTTAGCCAATATTTCAAGTCACTTTTGCGGCGTTTCCTG-AACAAACGCCACTAAAAATTACCA
127 GTTTAGACAATATTTTAAGTCACTTTTGCGGCGTTTCGTGCAA-AAACGCCACTAAAAATTAAAA
* * * * *
24709557 TAAACGGCACCGTTTAATTAATATAGAGAAAATGCTAAGTTAAAAATCGTGGACAGAAACGACGT
191 GAAACGGCGCCGTTGAATTAATATAGAGAAAATGCTAAGTTAAAAAACGTGTACAGAAACGACGT
* * * *
24709622 CGTTTAGCCAAAATTTTAAGTCACTTTTACGGCGTTTCTTGTACAAACGCCG-TAATTGCTT-CA
256 CGTTTAGCCAAAATTTTAAGACACTTTTGCGGCGTTTCTTGAACAAACGCCGCT-ATTGCTTGTA
* *
24709685 GCATTAGCTGCGTTTTT
320 -CATTAGCAGCGTTTCT
** *** * * *
24709702 AATAAAAATGCCACTAACTGTTAAAGTTCTAATCGGAAACTGCACCGTTTTATTAAGCTTCAATG
1 -A-AAAAGCGCCACTAAAAATTAAAGTTCTAATCCGAAACGGCACCGTTTTATTAAGCTTTAATG
* * *
24709767 CACAGTTCTGGCGTTTT-TTTTAAAACGCCACTAAAAATTATTTTACTTAA
64 CACAGTTCTGGCGTTTTCTGTTAAAACGCCACTAAAAATTAATTTGCTTAA
24709817 ACCAAACGGT
Statistics
Matches: 656, Mismatches: 109, Indels: 45
0.81 0.13 0.06
Matches are distributed among these distances:
334 5 0.01
335 19 0.03
336 104 0.16
337 192 0.29
338 328 0.50
339 8 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (335 bp):
AAAAAGCGCCACTAAAAATTAAAGTTCTAATCCGAAACGGCACCGTTTTATTAAGCTTTAATGCA
CAGTTCTGGCGTTTTCTGTTAAAACGCCACTAAAAATTAATTTGCTTAAGCTAAACGAGATGTTT
AGACAATATTTTAAGTCACTTTTGCGGCGTTTCGTGCAAAAACGCCACTAAAAATTAAAAGAAAC
GGCGCCGTTGAATTAATATAGAGAAAATGCTAAGTTAAAAAACGTGTACAGAAACGACGTCGTTT
AGCCAAAATTTTAAGACACTTTTGCGGCGTTTCTTGAACAAACGCCGCTATTGCTTGTACATTAG
CAGCGTTTCT
Found at i:24711125 original size:21 final size:20
Alignment explanation
Indices: 24711095--24711133 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
24711085 AACACATATT
*
24711095 AACCTTAAACCTTAAACCCC
1 AACCTTAAACCATAAACCCC
24711115 AACCTTTAAACCATAAACC
1 AACC-TTAAACCATAAACC
24711134 ACAAACTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.21
Consensus pattern (20 bp):
AACCTTAAACCATAAACCCC
Found at i:24711264 original size:41 final size:41
Alignment explanation
Indices: 24711178--24711269 Score: 96
Period size: 41 Copynumber: 2.2 Consensus size: 41
24711168 ATAAACGCTG
* * * *
24711178 CTAAAACCACGAGCATTAGCGGCGCAAAACTAAAAACGCCG
1 CTAAAACCCCGAACATTAGCGGCGCAAAACTAAAAACACCA
** *
24711219 CTAAAACCCCGAACATTAGCGGCG-ATATTCTGAAAACACCA
1 CTAAAACCCCGAACATTAGCGGCGCA-AAACTAAAAACACCA
*
24711260 CTAAAGCCCC
1 CTAAAACCCC
24711270 CAAAAGGTCA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 1 0.02
41 41 0.98
ACGTcount: A:0.39, C:0.32, G:0.16, T:0.13
Consensus pattern (41 bp):
CTAAAACCCCGAACATTAGCGGCGCAAAACTAAAAACACCA
Found at i:24711416 original size:89 final size:89
Alignment explanation
Indices: 24711265--24711527 Score: 401
Period size: 89 Copynumber: 3.0 Consensus size: 89
24711255 CACCACTAAA
* * *
24711265 GCCCCCAAAAGGTCAACAAACTACGTCGTTGGGTTTGGTTTTTTTGCGGCGTTTTCCTCAAAAAC
1 GCCCCCAAAAGGTCAACAAACGACGTCGTTGGGTTTGGTTTTTTTGCGGTGTTTTCCCCAAAAAC
24711330 GCCGCTAATGTTTTCTTTAGTGGC
66 GCCGCTAATGTTTTCTTTAGTGGC
* *
24711354 GCCCCCAAAAGGTCAACAAACGACGTCATTGGGTTTGGTTTTTTTGCGGTGTTTTCCCCAAAAAT
1 GCCCCCAAAAGGTCAACAAACGACGTCGTTGGGTTTGGTTTTTTTGCGGTGTTTTCCCCAAAAAC
*
24711419 GCCACTAATGTTTTCTTTAGTGGC
66 GCCGCTAATGTTTTCTTTAGTGGC
* *
24711443 GCCCCCAAAA-G----CAAACGACGTCGTTGGGTTTGGTTTTTTTACGGTGTTTTCTCCAAAAAC
1 GCCCCCAAAAGGTCAACAAACGACGTCGTTGGGTTTGGTTTTTTTGCGGTGTTTTCCCCAAAAAC
* *
24711503 GCCGCTAGTGTTTTCTTTTGTGGC
66 GCCGCTAATGTTTTCTTTAGTGGC
24711527 G
1 G
24711528 TTTTTTTATA
Statistics
Matches: 161, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
84 67 0.42
88 1 0.01
89 93 0.58
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (89 bp):
GCCCCCAAAAGGTCAACAAACGACGTCGTTGGGTTTGGTTTTTTTGCGGTGTTTTCCCCAAAAAC
GCCGCTAATGTTTTCTTTAGTGGC
Found at i:24713282 original size:16 final size:16
Alignment explanation
Indices: 24713261--24713309 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
24713251 TGATTTTTTA
24713261 ATTAATAAAATATTAT
1 ATTAATAAAATATTAT
*
24713277 ATTAATATAAT-TTA-
1 ATTAATAAAATATTAT
24713291 ATT-ATAAAAATATTGAT
1 ATTAAT-AAAATATT-AT
24713308 AT
1 AT
24713310 AAAATGGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 2 0.07
14 7 0.26
15 5 0.19
16 11 0.41
17 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATTAATAAAATATTAT
Found at i:24720661 original size:17 final size:17
Alignment explanation
Indices: 24720633--24720672 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
24720623 AGGATAGTGA
*
24720633 GGAAGATGAGAAATAAAT
1 GGAAGATGAGAAA-AAAG
24720651 GGAAG-TGAGAAAAAAG
1 GGAAGATGAGAAAAAAG
24720667 GGAAGA
1 GGAAGA
24720673 AACTCTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 8 0.40
17 7 0.35
18 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.35, T:0.10
Consensus pattern (17 bp):
GGAAGATGAGAAAAAAG
Found at i:24722619 original size:41 final size:41
Alignment explanation
Indices: 24722560--24722660 Score: 148
Period size: 41 Copynumber: 2.5 Consensus size: 41
24722550 CGAACCCAAT
* * *
24722560 ATGAAACGCCTAAACTTGTGGGATTGATTAAGGTCCTTGTA
1 ATGAAACGCCTAAGCTTGTGAGATTGATTAAGGTCATTGTA
** *
24722601 ATGAAACATCTAAGCTTGTGAGATTGATTAGGGTCATTGTA
1 ATGAAACGCCTAAGCTTGTGAGATTGATTAAGGTCATTGTA
24722642 ATGAAACGCCTAAGCTTGT
1 ATGAAACGCCTAAGCTTGT
24722661 TAACATTCTC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (41 bp):
ATGAAACGCCTAAGCTTGTGAGATTGATTAAGGTCATTGTA
Found at i:24724389 original size:17 final size:18
Alignment explanation
Indices: 24724355--24724390 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
24724345 TTTGTTTTTT
24724355 TATGAATATTTTTCTATA
1 TATGAATATTTTTCTATA
*
24724373 TATGAAT-TTTTTTTATA
1 TATGAATATTTTTCTATA
24724390 T
1 T
24724391 TTATACGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (18 bp):
TATGAATATTTTTCTATA
Found at i:24724635 original size:21 final size:24
Alignment explanation
Indices: 24724611--24724671 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
24724601 TTATGTACCT
24724611 TTTA-TTCTTT-ATTT-TTTATTA
1 TTTAGTTCTTTCATTTGTTTATTA
24724632 TTTAGTTCTTTCATTTGTTTATTAA
1 TTTAGTTCTTTCATTTGTTTATT-A
24724657 TTT-GTGT-TTTCATTT
1 TTTAGT-TCTTTCATTT
24724672 ATATTATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.11
22 6 0.17
23 4 0.11
24 16 0.46
25 5 0.14
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.70
Consensus pattern (24 bp):
TTTAGTTCTTTCATTTGTTTATTA
Found at i:24724793 original size:15 final size:15
Alignment explanation
Indices: 24724773--24724807 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
24724763 TTTCTATGCC
24724773 ATTGTTATATTTATT
1 ATTGTTATATTTATT
*
24724788 ATTGTTGTATTTATT
1 ATTGTTATATTTATT
24724803 ATTGT
1 ATTGT
24724808 GGCATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (15 bp):
ATTGTTATATTTATT
Found at i:24736439 original size:44 final size:43
Alignment explanation
Indices: 24736308--24737673 Score: 624
Period size: 44 Copynumber: 31.6 Consensus size: 43
24736298 CCAGTAATCC
* * * * *
24736308 TATCTCCCTGAGGTTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * * *
24736352 TATCTCTCTGAAGTTGCAG-AGAGCAG-GT-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
24736392 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * *
24736436 TATC-CTCCTGAAATTGCAGT-GAGGCAGACTGAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * *
24736481 TATCTCCCTGAAGTTGCGGTGGAGCAGA-TTA-AAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * * * *
24736525 TATCCCCCTGAGGTTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
24736569 TATCT--CTGAAGTTACAG-AGAACAGA--ACA-CATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTA-AGAAGCAAGTCT
24736607 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * *
24736651 TATC-CTCCTGAAGTTACAGT-GAGGCAGGCTAA-ATATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACTAAGA-A--GCAAGTCT
*
24736696 GATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * *
24736740 TATC-CTCCTGAAATTGCAGT-GAGGCAGACTGAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * * *
24736785 TATCTCCCTGAAGTTGCGGTAGAGCAGA-TTA-AAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * * *
24736829 TATCTCCCTGAGGTTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
24736873 TATCT--CTGAAGTTGCAG-AGAACAGA-TCA-CATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
24736911 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* *
24736955 TATC-CTCCTGAAGTTGCAGT-GAGGCAGGCTAA-ATATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACTAAGA-A--GCAAGTCT
* * * * * *
24737000 GATCTCCTTGAAGTTGCAGTGGAGCAGA-TTAGAACCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-A-AGTCT
* ** * * *
24737044 TATC-CCACTGAGGTTGCAGTGGAGTGGATTAA-AACCTTAGATCT
1 TATCTCC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * * *
24737088 TATCTCTCTGAAGTTGTAG-AGAGCAGA-T-CGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
24737128 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAGCAAGTCT
* *
24737172 TATC-CTCCTGAAGTTGCAGT-GAGGCAGACTAAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * ** * *
24737217 TATCTCCCTGAAATTACAGTGGAGCAGATTAATGCTG-ATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA-GAAGCA-AGTCT
* * *
24737261 TATCTCCCTGAGGTTGCAGTGGAGC-GTATTAA-AATCACAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAG-ACTAAGAAGCA-AGTCT
* * * * * *
24737304 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
**
24737344 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATTAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* *
24737388 TATC-CTCCTGAAGTTGCAGT-GAGGCAGACTAAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * ** * *
24737433 TATCTCCCTGAAATTACAGTGGAGCAGATTAATGCTG-ATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA-GAAGCA-AGTCT
* * * *
24737477 TATCTCCCTGAAGTTGCAGTTGAGCGGATTAA-AACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG-TCT
* * * * * * **
24737521 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCA-CATCGGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* * * * *
24737562 TATCTCCTTGAAGTTACAGTAGAGTATACTCAAGAAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-AAGCAAGTCT
* * * * * *
24737607 TATC-CCCTTGAAATTGCAGTGGAACAGACTAAATAAACAAATCC
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGACT-AAGAAGCAAGTCT
* *
24737651 TGTCTCCCT-AAGTTGTAGTGGAG
1 TATCTCCCTGAAGTTGCAGTGGAG
24737674 TAGATTAGAG
Statistics
Matches: 1014, Mismatches: 208, Indels: 201
0.71 0.15 0.14
Matches are distributed among these distances:
38 16 0.02
39 7 0.01
40 93 0.09
41 80 0.08
42 47 0.05
43 86 0.08
44 441 0.43
45 224 0.22
46 19 0.02
47 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
Found at i:24736503 original size:89 final size:86
Alignment explanation
Indices: 24736303--24737460 Score: 491
Period size: 89 Copynumber: 13.4 Consensus size: 86
24736293 GGTGGCCAGT
* * * * * *
24736303 AATCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAA-AACCTTAGATCTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCTC-CTGAAGTT
* * *
24736367 GCA--GAGAGCAGGT-CGCAT--CT
63 GCAGTGAGAGCAGATAAG-ATGGCA
* * *
24736387 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
24736452 CAGTGAG-GCAGACTGAAGATGGCA
64 CAGTGAGAGCAGA-T-AAGATGGCA
* * * * * *
24736476 AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGA-TTA-AAGCCGATAATCCTATCCCCCTGAGGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTAT-CTCCTGAAGT
* * ****
24736539 TGCAGTG-GAGCGGATTAAAACCTTA
62 TGCAGTGAGAGCAGA-TAAGATGGCA
* * * * * * *
24736564 GATCTTATCT--CTGAAGTTACAG-AGAACAGA--ACA-CATCTAGTCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA-AGAAGCAAGTCTTATCT-CCTGAAGTTG
*
24736623 CAGTG-GAGCAGACTAAG-TAAGCA
64 CAGTGAGAGCAGA-TAAGAT-GGCA
* * * * *
24736646 AGTCTTATC-CTCCTGAAGTTACAGT-GAGGCAGGCTAA-ATATGGCAAATCTGATCTCCCTGAA
1 AATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTAAGA-A--GCAAGTCTTATCT-CCTGAA
*
24736708 GTTGCAGTG-GAGCAGACTAAG-TAAGCA
60 GTTGCAGTGAGAGCAGA-TAAGAT-GGCA
* * * *
24736735 AGTCTTATC-CTCCTGAAATTGCAGT-GAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
1 AATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCTTATCT-CCTGAAG
* *
24736798 TTGCGGT-AGAGCAGATTAA-A-GCCGA
61 TTGCAGTGAGAGCAGA-TAAGATGGC-A
* * * * * *
24736823 TAATCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAA-AACCTTAGATCTTATCT-CTGAAGTT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCTCCTGAAGTT
* * * *
24736886 GCA--GAGAACAGATCACAT--CT
63 GCAGTGAGAGCAGATAAGATGGCA
*
24736906 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
* *
24736971 CAGTGAG-GCAGGCTAAATATGGCA
64 CAGTGAGAGCA-GAT-AAGATGGCA
* * * * * * * *
24736995 AATCTGATCTCCTTGAAGTTGCAGTGGAGCAGA-TTAGAACCGATAATCCTATCCCACTGAGGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-A-AGTCTTATCTC-CTGAAGTT
** * ****
24737059 GCAGTG-GAGTGGATTAAAACCTTA
63 GCAGTGAGAGCAGA-TAAGATGGCA
* * * * * * * *
24737083 GATCTTATCTCTCTGAAGTTGTAG-AGAGCAGA-T-CGCATCCAGTCTTATCTCCCTGAAGTTGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCT-CCTGAAGTTGC
*
24737145 AGTG-GAGCAGACTAA-ATAAGCA
65 AGTGAGAGCAGA-TAAGAT-GGCA
* * * *
24737167 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAA
1 AATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCTTATCT-CCTGAAG
* *
24737230 TTACAGTG-GAGCAGATTA-AT-GCTGA
61 TTGCAGTGAGAGCAGATAAGATGGC--A
* * * *
24737255 TAATCCTATCTCCCTGAGGTTGCAGTGGAGC-GTATTAA-AATCACAGTCTTATCTCTCTGAAGT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ACTAAGAAGCA-AGTCTTATCTC-CTGAAGT
* *
24737318 TGCA--GAGAGCAGAT-CGCAT--CT
62 TGCAGTGAGAGCAGATAAG-ATGGCA
* **
24737339 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATTAAGTCTTATCCTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
24737404 CAGTGAG-GCAGACTAAAGATGGCA
64 CAGTGAGAGCAGA-T-AAGATGGCA
* *
24737428 AATCTTATCTCCCTGAAATTACAGTGGAGCAGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
24737461 TTAATGCTGA
Statistics
Matches: 824, Mismatches: 164, Indels: 167
0.71 0.14 0.14
Matches are distributed among these distances:
81 1 0.00
82 75 0.09
83 37 0.04
84 148 0.18
85 49 0.06
86 59 0.07
87 45 0.05
88 70 0.08
89 330 0.40
90 8 0.01
91 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (86 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCTGAAGTTGCA
GTGAGAGCAGATAAGATGGCA
Found at i:24736675 original size:215 final size:216
Alignment explanation
Indices: 24736302--24736723 Score: 702
Period size: 215 Copynumber: 2.0 Consensus size: 216
24736292 CGGTGGCCAG
*
24736302 TAATCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
1 TAATCCTATCCCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTA-CTCTCTGAAGTT
* * ** *
24736367 GCAGAGAGCAGGTCGCATCTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
65 ACAGAGAACAGAACACATCTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
* * *
24736432 GTCTTATCCTCCTGAAATTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
130 GTCTTATCCTCCTGAAATTACAGTGAGGCAGACTAAAGATGGCAAATCTGATCTCCCTGAAGTTG
*
24736497 CGGTGGAGCAGATTAAAGCCGA
195 CAGTGGAGCAGATTAAAGCCGA
24736519 TAATCCTATCCCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTA-TCTCTGAAGTTA
1 TAATCCTATCCCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTACTCTCTGAAGTTA
*
24736583 CAGAGAACAGAACACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
66 CAGAGAACAGAACACATCTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
* * *
24736648 TCTTATCCTCCTGAAGTTACAGTGAGGCAGGCTAAATATGGCAAATCTGATCTCCCTGAAGTTGC
131 TCTTATCCTCCTGAAATTACAGTGAGGCAGACTAAAGATGGCAAATCTGATCTCCCTGAAGTTGC
24736713 AGTGGAGCAGA
196 AGTGGAGCAGA
24736724 CTAAGTAAGC
Statistics
Matches: 191, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
215 140 0.73
217 51 0.27
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (216 bp):
TAATCCTATCCCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTACTCTCTGAAGTTA
CAGAGAACAGAACACATCTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
TCTTATCCTCCTGAAATTACAGTGAGGCAGACTAAAGATGGCAAATCTGATCTCCCTGAAGTTGC
AGTGGAGCAGATTAAAGCCGA
Found at i:24736852 original size:304 final size:304
Alignment explanation
Indices: 24736393--24737027 Score: 1207
Period size: 304 Copynumber: 2.1 Consensus size: 304
24736383 ATCTAGTCTT
*
24736393 ATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
*
24736458 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCGATAAT
66 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCGGTAGAGCAGATTAAAGCCGATAAT
24736523 CCTATCCCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTGAAGTTACAGAG
131 CCTATCCCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTGAAGTTACAGAG
24736588 AACAGAACACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
196 AACAGAACACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
24736653 TCCTCCTGAAGTTACAGTGAGGCAGGCTAAATATGGCAAATCTG
261 TCCTCCTGAAGTTACAGTGAGGCAGGCTAAATATGGCAAATCTG
24736697 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
24736762 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCGGTAGAGCAGATTAAAGCCGATAAT
66 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCGGTAGAGCAGATTAAAGCCGATAAT
* *
24736827 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTGAAGTTGCAGAG
131 CCTATCCCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTGAAGTTACAGAG
*
24736892 AACAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
196 AACAGAACACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
*
24736957 TCCTCCTGAAGTTGCAGTGAGGCAGGCTAAATATGGCAAATCTG
261 TCCTCCTGAAGTTACAGTGAGGCAGGCTAAATATGGCAAATCTG
*
24737001 ATCTCCTTGAAGTTGCAGTGGAGCAGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGA
24737028 TTAGAACCGA
Statistics
Matches: 324, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
304 324 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.26
Consensus pattern (304 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCGGTAGAGCAGATTAAAGCCGATAAT
CCTATCCCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTGAAGTTACAGAG
AACAGAACACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
TCCTCCTGAAGTTACAGTGAGGCAGGCTAAATATGGCAAATCTG
Found at i:24737198 original size:217 final size:217
Alignment explanation
Indices: 24736697--24737680 Score: 1376
Period size: 217 Copynumber: 4.5 Consensus size: 217
24736687 GGCAAATCTG
*
24736697 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
* * *
24736762 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCGGTAGAGCAGATTAA-AGCCGATAA
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAATA-CCGATAA
**
24736826 TCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTA--TCTCTGAAGTTGCA
130 TCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCA
*
24736889 GAGAACAGATCACATCTAGTCTT
195 GAGAGCAGATCACATCTAGTCTT
24736912 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
* * * *
24736977 GGCAGGCTAAATATGGCAAATCTGATCTCCTTGAAGTTGCAGTGGAGCAGATTAGA-ACCGATAA
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTA-ATACCGATAA
* ** *
24737041 TCCTATC-CCACTGAGGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGT
130 TCCTATCTCC-CTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGC
* *
24737105 AGAGAGCAGATCGCATCCAGTCTT
194 AGAGAGCAGATCACATCTAGTCTT
*
24737129 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
* * * *
24737194 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCTGATAAT
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAATACCGATAAT
* *
24737259 CCTATCTCCCTGAGGTTGCAGTGGAGCGTATTAAAATCACAG-TCTTATCTCTCTGAAGTTGCAG
131 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
*
24737323 AGAGCAGATCGCATCTAGTCTT
196 AGAGCAGATCACATCTAGTCTT
**
24737345 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATTAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
* * * *
24737410 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCTGATAAT
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAATACCGATAAT
* *
24737475 CCTATCTCCCTGAAGTTGCAGTTGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
131 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
* **
24737540 TAGAGTAGATCACATCGGGTCTT
196 -AGAGCAGATCACATCTAGTCTT
* * * * * * *
24737563 ATCTCCTTGAAGTTACAGTAGAGTATACTCAAGAAAGCAAGTCTTATCC-CCTTGAAATTGCAGT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCAAGTCTTATCCTCC-TGAAGTTGCAGT
* * ** * * * *
24737627 G-GAACAGACTAAATA-AACAAATCCTGTCTCCCT-AAGTTGTAGTGGAGTAGATTA
64 GAG-GCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTA
24737681 GAGTGATGGA
Statistics
Matches: 699, Mismatches: 59, Indels: 20
0.90 0.08 0.03
Matches are distributed among these distances:
214 2 0.00
215 163 0.23
216 210 0.30
217 225 0.32
218 61 0.09
219 38 0.05
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (217 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAATACCGATAAT
CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
AGAGCAGATCACATCTAGTCTT
Found at i:24737360 original size:83 final size:84
Alignment explanation
Indices: 24737261--24737415 Score: 210
Period size: 83 Copynumber: 1.8 Consensus size: 84
24737251 CTGATAATCC
* *
24737261 TATCTCCCTGAGGTTGCAGTGGAGC-GTATTAA-AATCACAGTCTTAT-CTCTCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAG-ACTAAGAATCA-AGTCTTATCCTC-CTGAAGTTGCAG
24737323 AGA-GCAGATCGCATCTAGTCT
63 AGAGGCAGATCGCATCTAGTCT
* *
24737344 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATTAAGTCTTATCCTCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AATCAAGTCTTATCCTCCTGAAGTTGCAGAG
24737409 AGGCAGA
65 AGGCAGA
24737416 CTAAAGATGG
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
83 28 0.44
84 23 0.37
85 12 0.19
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAATCAAGTCTTATCCTCCTGAAGTTGCAGAGA
GGCAGATCGCATCTAGTCT
Found at i:24737408 original size:216 final size:217
Alignment explanation
Indices: 24736697--24737627 Score: 1388
Period size: 216 Copynumber: 4.3 Consensus size: 217
24736687 GGCAAATCTG
*
24736697 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
* * * * * *
24736762 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCGGTAGAGCAGATTAAAGCCGATAAT
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCCGATAAT
**
24736827 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTA--TCTCTGAAGTTGCAG
131 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
*
24736890 AGAACAGATCACATCTAGTCTT
196 AGAGCAGATCACATCTAGTCTT
24736912 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
* * * * * * *
24736977 GGCAGGCTAAATATGGCAAATCTGATCTCCTTGAAGTTGCAGTGGAGCAGATTAGA-ACCGATAA
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTA-ATGCCGATAA
* ** *
24737041 TCCTATC-CCACTGAGGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGT
130 TCCTATCTCC-CTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGC
* *
24737105 AGAGAGCAGATCGCATCCAGTCTT
194 AGAGAGCAGATCACATCTAGTCTT
*
24737129 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
*
24737194 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCTGATAAT
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCCGATAAT
* *
24737259 CCTATCTCCCTGAGGTTGCAGTGGAGCGTATTAAAATCACAG-TCTTATCTCTCTGAAGTTGCAG
131 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
*
24737323 AGAGCAGATCGCATCTAGTCTT
196 AGAGCAGATCACATCTAGTCTT
**
24737345 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATTAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
*
24737410 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCTGATAAT
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCCGATAAT
* *
24737475 CCTATCTCCCTGAAGTTGCAGTTGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
131 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
* **
24737540 TAGAGTAGATCACATCGGGTCTT
196 -AGAGCAGATCACATCTAGTCTT
* * * * * * *
24737563 ATCTCCTTGAAGTTACAGTAGAGTATACTCAAGAAAGCAAGTCTTATCC-CCTTGAAATTGCAGT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCAAGTCTTATCCTCC-TGAAGTTGCAGT
24737627 G
64 G
24737628 GAACAGACTA
Statistics
Matches: 656, Mismatches: 50, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
214 2 0.00
215 163 0.25
216 209 0.32
217 208 0.32
218 46 0.07
219 28 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (217 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCCGATAAT
CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAG
AGAGCAGATCACATCTAGTCTT
Found at i:24737508 original size:433 final size:433
Alignment explanation
Indices: 24736697--24737627 Score: 1397
Period size: 433 Copynumber: 2.1 Consensus size: 433
24736687 GGCAAATCTG
*
24736697 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
* * * *
24736762 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCGGTAGAGCAGATTAAAGCCGATAAT
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTAGAGCAGATTAAAGCCGATAAT
**
24736827 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTGAAGTTGCAGAG
131 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTGAAGTTGCAGAG
24736892 AACAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
196 AACAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
* * * * *
24736957 TCCTCCTGAAGTTGCAGTGAGGCAGGCTAAATATGGCAAATCTGATCTCCTTGAAGTTGCAGTGG
261 TCCTCCTGAAGTTGCAGTGAGGCAGACTAAAGATGGCAAATCTGATCTCCCTGAAATTACAGTGG
* * **
24737022 AGCAGATTAGAACCGATAATCCTATCCCACTGAGGTTGCAGTGGAGTGGATTAAAACCTTAGATC
326 AGCAGATTAGAACCGATAATCCTATCCCACTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATC
* *
24737087 TTATCTCTCTGAAGTTGTAG-AGAGCAGATCGCATCCAGTCTT
391 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTT
*
24737129 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
* * *
24737194 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAATGCTGATAAT
66 GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTAGAGCAGATTAAAGCCGATAAT
* *
24737259 CCTATCTCCCTGAGGTTGCAGTGGAGCGTATTAAAATCACAG-TCTTATCTCTCTGAAGTTGCAG
131 CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTA--TCTCTGAAGTTGCAG
* * **
24737323 AGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATTAAGTCT
194 AGAACAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
*
24737388 TATCCTCCTGAAGTTGCAGTGAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGT
259 TATCCTCCTGAAGTTGCAGTGAGGCAGACTAAAGATGGCAAATCTGATCTCCCTGAAATTACAGT
* * *
24737453 GGAGCAGATTA-ATGCTGATAATCCTATCTCC-CTGAAGTTGCAGTTGAGCGGATTAAAACCACA
324 GGAGCAGATTAGA-ACCGATAATCCTATC-CCACTGAAGTTGCAGTGGAGCGGATTAAAACCACA
* **
24737516 GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCACATCGGGTCTT
387 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTT
* * * * *
24737563 ATCTCCTTGAAGTTACAGTAGAGTATACTCAAGA-AAGCAAGTCTTATCC-CCTTGAAATTGCAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA-ATAAGCAAGTCTTATCCTCC-TGAAATTGCAG
24737626 TG
63 TG
24737628 GAACAGACTA
Statistics
Matches: 450, Mismatches: 41, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
431 5 0.01
432 160 0.36
433 209 0.46
434 46 0.10
435 29 0.06
436 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (433 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAATTGCAGTGA
GGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAATTACAGTAGAGCAGATTAAAGCCGATAAT
CCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTGAAGTTGCAGAG
AACAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
TCCTCCTGAAGTTGCAGTGAGGCAGACTAAAGATGGCAAATCTGATCTCCCTGAAATTACAGTGG
AGCAGATTAGAACCGATAATCCTATCCCACTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATC
TTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTT
Found at i:24738963 original size:24 final size:24
Alignment explanation
Indices: 24738927--24738982 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
24738917 TCCGCGTGTT
* *
24738927 TTTTAGCGGAGGGGAAAATTGCGC
1 TTTTAGCCGAGGGGAAAATTACGC
*
24738951 TTTTAGCCTAGGGGAAAATTACGC
1 TTTTAGCCGAGGGGAAAATTACGC
24738975 TTTTAGCC
1 TTTTAGCC
24738983 CCTCCGCCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (24 bp):
TTTTAGCCGAGGGGAAAATTACGC
Found at i:24739063 original size:21 final size:21
Alignment explanation
Indices: 24739018--24739063 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
24739008 TTAAGTTTTT
*
24739018 ATTTTATTTTTTAGATTTACC
1 ATTTTATTTTTTAGATTTACA
24739039 ATTTTATTTATTTTA-ATTT-CA
1 ATTTTA-TT-TTTTAGATTTACA
24739060 ATTT
1 ATTT
24739064 GGTCTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 11 0.50
22 6 0.27
23 5 0.23
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (21 bp):
ATTTTATTTTTTAGATTTACA
Found at i:24739339 original size:17 final size:18
Alignment explanation
Indices: 24739305--24739340 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
24739295 TTTGTTTTTT
24739305 TATGAATATTTTTCTATA
1 TATGAATATTTTTCTATA
*
24739323 TATGAAT-TTTTTTTATA
1 TATGAATATTTTTCTATA
24739340 T
1 T
24739341 TTATACGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (18 bp):
TATGAATATTTTTCTATA
Found at i:24739566 original size:25 final size:25
Alignment explanation
Indices: 24739528--24739578 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
24739518 TTTTTTAAAA
*
24739528 AAAAAAAAGTTTCAATGTATATATT
1 AAAAAAAAGGTTCAATGTATATATT
24739553 AAAAAAAAGGTTCAATGTATATATT
1 AAAAAAAAGGTTCAATGTATATATT
24739578 A
1 A
24739579 TGTACCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.53, C:0.04, G:0.10, T:0.33
Consensus pattern (25 bp):
AAAAAAAAGGTTCAATGTATATATT
Found at i:24740871 original size:303 final size:302
Alignment explanation
Indices: 24740325--24740933 Score: 1157
Period size: 303 Copynumber: 2.0 Consensus size: 302
24740315 TGGTACCAAA
*
24740325 TTTTGGGCATTACGGGGGTGCTAATCCTTCTTTGTACGTAACTGACTCCCGAACCCGTTTTTTTT
1 TTTTGGGCATTACGGGGGTGCTAATCCTTCCTTGTACGTAACTGACTCCCGAACCCGTTTTTTTT
24740390 CTAAAACTCGTAGACCAAAGCTATTTTTTAGGTGATCCAATCACACATCAATAAAAGATTGGTGG
66 CTAAAACTCGTAGACCAAAGCTATTTTTTAGGTGATCCAATCACACATCAATAAAAGATTGGTGG
24740455 CGACTCCCAATTTTTATCGACAACTAATTTTTTTCCAAAAATAAAAATGGTTTCGACATACATAA
131 CGACTCCCAATTTTTATCGACAACTAATTTTTTTCCAAAAATAAAAATGGTTTCGACATACATAA
24740520 AAAGGGTAAAGTACTTTAATAAGTGCAAGTCCTCCAATGGATTTATTTGTAAAATTTAATAGTTG
196 AAAGGGTAAAGTACTTTAATAAGTGCAAGTCCTCCAATGGATTTATTTGTAAAATTTAATAGTTG
24740585 TGTTAA-TTTTATAAACTTTGTTATCTTTGATTGAATATCATG
261 TGTTAATTTTTATAAACTTT-TTATCTTTGATTGAATATCATG
* *
24740627 TTTTGGGCGTTACGGGGGTGCTAATCCTTCCTTGTACGTAACTGACTCCCTAACCCGTTTTTTTT
1 TTTTGGGCATTACGGGGGTGCTAATCCTTCCTTGTACGTAACTGACTCCCGAACCCG-TTTTTTT
24740692 TCTAAAACTCGTAGACCAAAGCTATTTTTTAGGTGATCCAATCACACATCAATAAAAGATTGGTG
65 TCTAAAACTCGTAGACCAAAGCTATTTTTTAGGTGATCCAATCACACATCAATAAAAGATTGGTG
*
24740757 GCGACTCCTAATTTTTATCGACAACTAATTTTTTTCCAAAAATAAAAATGGTTTCGACATACATA
130 GCGACTCCCAATTTTTATCGACAACTAATTTTTTTCCAAAAATAAAAATGGTTTCGACATACATA
24740822 AAAAGGGTAAAGTACTTTAATAAGTGCAAGTCCTCCAATGGATTTATTTGTAAAATTTAATAGTT
195 AAAAGGGTAAAGTACTTTAATAAGTGCAAGTCCTCCAATGGATTTATTTGTAAAATTTAATAGTT
24740887 GTGTTAATTTTTATAAACTTTTTATCTTTGATTGAATATCATG
260 GTGTTAATTTTTATAAACTTTTTATCTTTGATTGAATATCATG
24740930 TTTT
1 TTTT
24740934 AATGAGCTCC
Statistics
Matches: 301, Mismatches: 4, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
302 54 0.18
303 234 0.78
304 13 0.04
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (302 bp):
TTTTGGGCATTACGGGGGTGCTAATCCTTCCTTGTACGTAACTGACTCCCGAACCCGTTTTTTTT
CTAAAACTCGTAGACCAAAGCTATTTTTTAGGTGATCCAATCACACATCAATAAAAGATTGGTGG
CGACTCCCAATTTTTATCGACAACTAATTTTTTTCCAAAAATAAAAATGGTTTCGACATACATAA
AAAGGGTAAAGTACTTTAATAAGTGCAAGTCCTCCAATGGATTTATTTGTAAAATTTAATAGTTG
TGTTAATTTTTATAAACTTTTTATCTTTGATTGAATATCATG
Found at i:24743055 original size:21 final size:21
Alignment explanation
Indices: 24743029--24743076 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
24743019 AAAAGGGTCT
24743029 AAATTATGAGTTTTTAAAAGG
1 AAATTATGAGTTTTTAAAAGG
24743050 AAATTATGAGTTTTTAAAAGG
1 AAATTATGAGTTTTTAAAAGG
*
24743071 CAATTA
1 AAATTA
24743077 AACTAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.44, C:0.02, G:0.17, T:0.38
Consensus pattern (21 bp):
AAATTATGAGTTTTTAAAAGG
Found at i:24744691 original size:39 final size:39
Alignment explanation
Indices: 24744648--24744751 Score: 127
Period size: 39 Copynumber: 2.7 Consensus size: 39
24744638 ATAAATATGT
*
24744648 TTTGAGTATTGTGATATATGCTTAAATGTTATGTGATTA
1 TTTGAGTATTGTGATATATGCTTAAATGTTAGGTGATTA
* **
24744687 TTTGAGTATTGTGATATATACTTGTATGTTAGGTGATTA
1 TTTGAGTATTGTGATATATGCTTAAATGTTAGGTGATTA
* * * **
24744726 TATGTGTAATACGATATATGCTTAAA
1 TTTGAGTATTGTGATATATGCTTAAA
24744752 AGTGAATATG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (39 bp):
TTTGAGTATTGTGATATATGCTTAAATGTTAGGTGATTA
Found at i:24749682 original size:9 final size:9
Alignment explanation
Indices: 24749668--24749693 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
24749658 TATTCGATCT
24749668 TTATTATTG
1 TTATTATTG
24749677 TTATTATTG
1 TTATTATTG
24749686 TTATTATT
1 TTATTATT
24749694 TAAAAGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (9 bp):
TTATTATTG
Found at i:24750442 original size:10 final size:10
Alignment explanation
Indices: 24750407--24750442 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
24750397 AATAGACATG
24750407 AAAATAAATA
1 AAAATAAATA
*
24750417 AAAACGAAATA
1 AAAA-TAAATA
24750428 AAAATAAATA
1 AAAATAAATA
24750438 AAAAT
1 AAAAT
24750443 TATACAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (10 bp):
AAAATAAATA
Found at i:24751612 original size:3 final size:3
Alignment explanation
Indices: 24751604--24751651 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
24751594 TAAAAAACTG
* * * *
24751604 ATA ATA ATA GTA TTTA ATA ATA GTA ATA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24751650 AT
1 AT
24751652 TTAGACATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
3 35 0.95
4 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:24753137 original size:33 final size:33
Alignment explanation
Indices: 24753095--24753159 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
24753085 ACCTCTTCAA
24753095 CGAAACGGTCATACATTTTTCCCTCCTATGACT
1 CGAAACGGTCATACATTTTTCCCTCCTATGACT
24753128 CGAAACGGTCATACATTTTTCCCTCCTATGAC
1 CGAAACGGTCATACATTTTTCCCTCCTATGAC
24753160 CAAGTTGCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.32
Consensus pattern (33 bp):
CGAAACGGTCATACATTTTTCCCTCCTATGACT
Found at i:24756105 original size:29 final size:29
Alignment explanation
Indices: 24756063--24756118 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
24756053 GGTCGAAAAA
24756063 AATGAATCTCTTGAACAATCAGAGTTAAC
1 AATGAATCTCTTGAACAATCAGAGTTAAC
24756092 AATGAATCTCTTGAACAATCAGAGTTA
1 AATGAATCTCTTGAACAATCAGAGTTA
24756119 TGATAAGTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (29 bp):
AATGAATCTCTTGAACAATCAGAGTTAAC
Found at i:24757108 original size:21 final size:21
Alignment explanation
Indices: 24757069--24757108 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
24757059 CATACGAATT
*
24757069 TTTTCTTGGGCTTACTTTGAA
1 TTTTCTTGGGCTTAATTTGAA
24757090 TTTT-TTGGGCTTAGATTTG
1 TTTTCTTGGGCTTA-ATTTG
24757109 TGATTGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.12, C:0.10, G:0.23, T:0.55
Consensus pattern (21 bp):
TTTTCTTGGGCTTAATTTGAA
Found at i:24757385 original size:5 final size:5
Alignment explanation
Indices: 24757377--24757415 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
24757367 TATTGTTCAT
24757377 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT
24757416 GAATATTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:24759796 original size:12 final size:12
Alignment explanation
Indices: 24759779--24759819 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
24759769 TGAGGGTAGG
24759779 ATCTGATTATGT
1 ATCTGATTATGT
*
24759791 ATCTGAATATGT
1 ATCTGATTATGT
* *
24759803 ATTTGATTATGC
1 ATCTGATTATGT
24759815 ATCTG
1 ATCTG
24759820 CATCTGATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (12 bp):
ATCTGATTATGT
Found at i:24760543 original size:17 final size:18
Alignment explanation
Indices: 24760485--24760545 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
24760475 ACCCTCTTAC
* *
24760485 TATATTATATAATGCTATA
1 TATATTATATAGT-ATATA
24760504 TCATATTATATAGTATATAA
1 T-ATATTATATAGTATAT-A
*
24760524 TATATTA-ATAGTTTATA
1 TATATTATATAGTATATA
24760541 TATAT
1 TATAT
24760546 ACATCAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
17 6 0.16
18 8 0.22
19 10 0.27
20 13 0.35
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (18 bp):
TATATTATATAGTATATA
Found at i:24763445 original size:17 final size:17
Alignment explanation
Indices: 24763423--24763457 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
24763413 TCCTTATGTA
24763423 TATTTGTTTCAT-TTATT
1 TATTTGTTT-ATATTATT
24763440 TATTTGTTTATATTATT
1 TATTTGTTTATATTATT
24763457 T
1 T
24763458 CTATGCCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.71
Consensus pattern (17 bp):
TATTTGTTTATATTATT
Found at i:24764085 original size:98 final size:98
Alignment explanation
Indices: 24763912--24764106 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
24763902 TACAATAAAA
*
24763912 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTC
1 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
* *
24763977 CTCTAGAATCCCAAACTCGGAATATTTCCTTTT
66 CTCTAAAATCCCAAACTCGGAAGATTTCCTTTT
24764010 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
1 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
*
24764075 CTTTAAAATCCCAAACTCGGAAGATTTCCTTT
66 CTCTAAAATCCCAAACTCGGAAGATTTCCTTT
24764107 ATTATTTAAA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (98 bp):
CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
CTCTAAAATCCCAAACTCGGAAGATTTCCTTTT
Found at i:24765250 original size:22 final size:21
Alignment explanation
Indices: 24765215--24765329 Score: 62
Period size: 19 Copynumber: 5.7 Consensus size: 21
24765205 AAAGGGTATC
* *
24765215 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
24765236 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
24765259 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
24765278 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
24765297 TGCATATCA-A-ATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
24765316 TGCATATCATATCT
1 TACAAATCATATCT
24765330 AAGATTNNNN
Statistics
Matches: 77, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
17 2 0.03
19 44 0.57
20 2 0.03
21 4 0.05
22 15 0.19
23 10 0.13
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:24765258 original size:23 final size:22
Alignment explanation
Indices: 24765215--24765272 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
24765205 AAAGGGTATC
* *
24765215 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
24765236 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
24765259 TGCATATCATATCT
1 TACAAATCATATCT
24765273 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:24765275 original size:19 final size:19
Alignment explanation
Indices: 24765251--24765335 Score: 134
Period size: 19 Copynumber: 4.5 Consensus size: 19
24765241 AATCATATCT
24765251 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
24765270 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
*
24765289 TCTAAGATTGCATATCAAA
1 TCTAAGATTGCATATCATA
24765308 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
24765327 TCTAAGATT
1 TCTAAGATT
24765336 NNNNNNNNNN
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 58 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:24765298 original size:38 final size:38
Alignment explanation
Indices: 24765228--24765335 Score: 135
Period size: 38 Copynumber: 2.7 Consensus size: 38
24765218 AAATTAAATC
* *
24765228 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCAAA
* *
24765270 TCTAAGATTATATATTATATCTAAGATTGCATATCAAA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCAAA
*
24765308 TCTAAGATTGCATATCATATCTAAGATT
1 TCTAAGATTACATATCATATCTAAGATT
24765336 NNNNNNNNNN
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
38 43 0.73
41 6 0.10
42 10 0.17
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCAAA
Found at i:24772747 original size:32 final size:32
Alignment explanation
Indices: 24772633--24772747 Score: 87
Period size: 33 Copynumber: 3.6 Consensus size: 32
24772623 GGACCTAGAA
* *
24772633 AATATAAAAAT-ATGATATTTGAA-ATAATTT
1 AATATAAAAATAATTATATTTAAATATAATTT
* *
24772663 CATAT-AAAATATTTA-ATTTCAAAATATAATTTT
1 AATATAAAAATAATTATATTT--AAATATAA-TTT
* ** *
24772696 AA-ATAAAACTAAAAAATATTTTAATATAATTT
1 AATATAAAAAT-AATTATATTTAAATATAATTT
24772728 AATATAAAAATAATTATATT
1 AATATAAAAATAATTATATT
24772748 AAAAATGTTA
Statistics
Matches: 63, Mismatches: 13, Indels: 16
0.68 0.14 0.17
Matches are distributed among these distances:
29 9 0.14
30 6 0.10
31 2 0.03
32 18 0.29
33 22 0.35
34 2 0.03
35 4 0.06
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (32 bp):
AATATAAAAATAATTATATTTAAATATAATTT
Found at i:24773015 original size:51 final size:51
Alignment explanation
Indices: 24772939--24773041 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 51
24772929 ATTGAATTAC
* *
24772939 TAATTACAGCTCTATCTCATTATAGCTCTTTACTATTACAACCCTATTCAA
1 TAATTACAACTCCATCTCATTATAGCTCTTTACTATTACAACCCTATTCAA
24772990 TAATTACAACTCCAT-TCCATTATAGCTCTTTACTATTACAACCCTATTCAA
1 TAATTACAACTCCATCT-CATTATAGCTCTTTACTATTACAACCCTATTCAA
24773041 T
1 T
24773042 TCTAATGAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 1 0.02
51 48 0.98
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (51 bp):
TAATTACAACTCCATCTCATTATAGCTCTTTACTATTACAACCCTATTCAA
Found at i:24773832 original size:22 final size:22
Alignment explanation
Indices: 24773804--24773914 Score: 84
Period size: 22 Copynumber: 4.9 Consensus size: 22
24773794 TAATATTATA
*
24773804 TATATTATGATTTTTATTAAAT
1 TATATTATAATTTTTATTAAAT
* *
24773826 TATATTA-AACATATTATTAAAT
1 TATATTATAA-TTTTTATTAAAT
*
24773848 TATA-TATTATTTTTATTAAAT
1 TATATTATAATTTTTATTAAAT
* *
24773869 TATATTTAATAATAATTATATTAAAA
1 TATA-TT-ATAAT--TTTTATTAAAT
24773895 TATGATTA-AATTATTTATTA
1 TAT-ATTATAATT-TTTATTA
24773915 TTATTAAATT
Statistics
Matches: 70, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
21 17 0.24
22 23 0.33
23 7 0.10
24 7 0.10
25 1 0.01
26 14 0.20
27 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (22 bp):
TATATTATAATTTTTATTAAAT
Found at i:24773890 original size:26 final size:26
Alignment explanation
Indices: 24773861--24773948 Score: 86
Period size: 26 Copynumber: 3.3 Consensus size: 26
24773851 ATATTATTTT
24773861 TATTAAATTATATTTAATAATAATTA
1 TATTAAATTATATTTAATAATAATTA
* * * *
24773887 TATTAAAATATGATTAAATTATTTATTA
1 TATTAAATTAT-ATTTAA-TAATAATTA
* **
24773915 TTATTAAATTATTTTTAATAATAATCC
1 -TATTAAATTATATTTAATAATAATTA
24773942 TATTAAA
1 TATTAAA
24773949 ATTTAATAAC
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
26 17 0.35
27 10 0.21
28 11 0.23
29 10 0.21
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (26 bp):
TATTAAATTATATTTAATAATAATTA
Found at i:24773926 original size:55 final size:58
Alignment explanation
Indices: 24773823--24773950 Score: 181
Period size: 55 Copynumber: 2.2 Consensus size: 58
24773813 ATTTTTATTA
* *
24773823 AATTATATTAAACATATTATTAAATTATATATTATTTTTATTAAATTATATTTAATAAT
1 AATTATATTAAA-ATATGATTAAATTATATATTATTATTATTAAATTATATTTAATAAT
*
24773882 AATTATATTAAAATATGATTAAA-T-TAT-TTATTATTATTAAATTATTTTTAATAAT
1 AATTATATTAAAATATGATTAAATTATATATTATTATTATTAAATTATATTTAATAAT
**
24773937 AATCCTATTAAAAT
1 AATTATATTAAAAT
24773951 TTAATAACAA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
55 38 0.59
56 3 0.05
57 1 0.02
58 10 0.16
59 12 0.19
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (58 bp):
AATTATATTAAAATATGATTAAATTATATATTATTATTATTAAATTATATTTAATAAT
Found at i:24776013 original size:22 final size:22
Alignment explanation
Indices: 24775983--24776024 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
24775973 AAAATCTACT
* *
24775983 TTTTTTTTTGTTGTTGTTTTAA
1 TTTTATTTTCTTGTTGTTTTAA
24776005 TTTTATTTTCTTGTTGTTTT
1 TTTTATTTTCTTGTTGTTTT
24776025 CTCCCTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.02, G:0.12, T:0.79
Consensus pattern (22 bp):
TTTTATTTTCTTGTTGTTTTAA
Found at i:24776140 original size:30 final size:30
Alignment explanation
Indices: 24776106--24776170 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
24776096 ACTTATTTTA
24776106 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
24776136 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
24776166 TTGTT
1 TTGTT
24776171 TGTTAAGTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.23, C:0.03, G:0.15, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:24776286 original size:18 final size:18
Alignment explanation
Indices: 24776251--24776288 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
24776241 GAAATATTTA
*
24776251 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTATAATAT
24776269 TTTTGATGTATTAT-ATAT
1 TTTTGATGT-TTATAATAT
24776287 TT
1 TT
24776289 AAAATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.66
Consensus pattern (18 bp):
TTTTGATGTTTATAATAT
Found at i:24778072 original size:18 final size:18
Alignment explanation
Indices: 24778040--24778090 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
24778030 ATACCCATTT
*
24778040 CTCTCCATC-TTTCTTTC
1 CTCTCTATCTTTTCTTTC
24778057 CTCTCTATCTTTTCTTTC
1 CTCTCTATCTTTTCTTTC
*
24778075 CTCTCTTATCTCTTCT
1 CTCTC-TATCTTTTCT
24778091 GTGCCCTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.27
18 13 0.43
19 9 0.30
ACGTcount: A:0.06, C:0.37, G:0.00, T:0.57
Consensus pattern (18 bp):
CTCTCTATCTTTTCTTTC
Found at i:24786014 original size:51 final size:51
Alignment explanation
Indices: 24785937--24786047 Score: 186
Period size: 51 Copynumber: 2.2 Consensus size: 51
24785927 ACATGGATCA
* *
24785937 CACTTATCACTTGTCACTGATAAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTGTCAATTGTCACTGATAAGATAAGTGTAGCTAAAGCTACCACTTAT
* *
24785988 CACTTGTCAATTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTGTCAATTGTCACTGATAAGATAAGTGTAGCTAAAGCTACCACTTAT
24786039 CACTTGTCA
1 CACTTGTCA
24786048 CTGATCCAGA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (51 bp):
CACTTGTCAATTGTCACTGATAAGATAAGTGTAGCTAAAGCTACCACTTAT
Found at i:24787418 original size:12 final size:12
Alignment explanation
Indices: 24787401--24787434 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
24787391 AACACTCCAT
24787401 AAATATTTATAA
1 AAATATTTATAA
24787413 AAATATTTATAA
1 AAATATTTATAA
24787425 AAATATTTAT
1 AAATATTTAT
24787435 GGCTCGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
AAATATTTATAA
Found at i:24795092 original size:3 final size:3
Alignment explanation
Indices: 24795084--24795112 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
24795074 AGAGTATGAA
24795084 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
24795113 GTAGTAGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:24798722 original size:61 final size:61
Alignment explanation
Indices: 24798646--24798770 Score: 171
Period size: 62 Copynumber: 2.0 Consensus size: 61
24798636 CTACAGAGAG
* * * *
24798646 CTTTTTCTTTGTGCAAAGAATCTTACTGTTG-TTTTTTTGTCTTTGTCTTGCAGGGAATTT
1 CTTTTTCTTTGTGCAAAGAATCTCACTGTTGATTCTTCTGTCCTTGTCTTGCAGGGAATTT
* * *
24798706 CTTTTTCCTTTGTGCAAAGAATGTCATTGTTGATTCTTCTGTCCTTGTCTTGTAGGGAATTT
1 CTTTTT-CTTTGTGCAAAGAATCTCACTGTTGATTCTTCTGTCCTTGTCTTGCAGGGAATTT
24798768 CTT
1 CTT
24798771 CATCTTTTGA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
60 6 0.11
61 22 0.39
62 28 0.50
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.51
Consensus pattern (61 bp):
CTTTTTCTTTGTGCAAAGAATCTCACTGTTGATTCTTCTGTCCTTGTCTTGCAGGGAATTT
Found at i:24803100 original size:53 final size:53
Alignment explanation
Indices: 24802990--24803166 Score: 164
Period size: 53 Copynumber: 3.3 Consensus size: 53
24802980 TAACTAGTGT
* * * ** *
24802990 GTTATGACATCATATGGGTAAAAAAACCATGTCATGTAAGACTGTAACTAT-TAG
1 GTTATGGCATCATATGGGT-AAAACACCATATCATGTAAGACCATAAC-ATGTGG
* * *
24803044 GTTATGGCATGATATGGGTAGAACACCATATCGTGTAAGACCATAACATGTGG
1 GTTATGGCATCATATGGGTAAAACACCATATCATGTAAGACCATAACATGTGG
* * *
24803097 GTTAGGGCATTATATGGGAAAAAGC-CCATATCATGTAAGA-CAGTAAC-TGGTGG
1 GTTATGGCATCATATGGGTAAAA-CACCATATCATGTAAGACCA-TAACAT-GTGG
*
24803150 GTTATGGAATCATATGG
1 GTTATGGCATCATATGG
24803167 AAAGATTTAA
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 5 0.05
53 79 0.77
54 18 0.18
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (53 bp):
GTTATGGCATCATATGGGTAAAACACCATATCATGTAAGACCATAACATGTGG
Found at i:24803390 original size:28 final size:28
Alignment explanation
Indices: 24803349--24803453 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 28
24803339 AAGGGTAAGA
* * *
24803349 CTTTGTGGCAAACCTCTTAAAGGATAGC
1 CTTTGTGGTAAACCTCTTAAAGGAAAAC
* *
24803377 CTTTGTGGTGAACCTGTTAAAGGAAAAC
1 CTTTGTGGTAAACCTCTTAAAGGAAAAC
* * *
24803405 CTTTGTGGTAAAACT-TTGGAAAGGTAAGC
1 CTTTGTGGTAAACCTCTT--AAAGGAAAAC
* *
24803434 CTTTGTGGCAAACCTTTTAA
1 CTTTGTGGTAAACCTCTTAA
24803454 TGAACGCCTT
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
27 2 0.03
28 38 0.60
29 21 0.33
30 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (28 bp):
CTTTGTGGTAAACCTCTTAAAGGAAAAC
Found at i:24805601 original size:6 final size:6
Alignment explanation
Indices: 24805590--24805621 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
24805580 ATGGGCCTCG
*
24805590 ATTCAT ATTCAT ATTCAT ATTCAT ATTTAT AT
1 ATTCAT ATTCAT ATTCAT ATTCAT ATTCAT AT
24805622 CATTCAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.53
Consensus pattern (6 bp):
ATTCAT
Found at i:24808544 original size:60 final size:62
Alignment explanation
Indices: 24808370--24808740 Score: 450
Period size: 63 Copynumber: 6.0 Consensus size: 62
24808360 TCTTTGTAGC
* * * *
24808370 AAACATACATTCGGATAACATATATATATAATTCAAACAATTAAATTCATCTTATAGAACTCA
1 AAACATACATTCGGCTAACATAT-TATATAATTCATACAATTAGATTCAACTTATAGAACTCA
* * * *
24808433 AAACATACATTCGACTAACATATATATATATAATTTATACAATTAGCTTCAACTAATAGAACTCA
1 AAACATACATTCGGCTAAC--ATAT-TATATAATTCATACAATTAGATTCAACTTATAGAACTCA
* *
24808498 ATACATACATT-GGCTAACATATT-TATAATTCATACAATTAGTTTCAACTTATCA-AACTCA
1 AAACATACATTCGGCTAACATATTATATAATTCATACAATTAGATTCAACTTAT-AGAACTCA
* *
24808558 AAACATACATTCGGCTAACATATTTATATAATTCAT-CAAATTAAATTCAGCTTATAGAACTCA
1 AAACATACATTCGGCTAACATA-TTATATAATTCATAC-AATTAGATTCAACTTATAGAACTCA
*
24808621 AAACATACATT-GGCTAACATA-TATATAATTCATACAATTAGTTTCAACTTATCA-AACTCA
1 AAACATACATTCGGCTAACATATTATATAATTCATACAATTAGATTCAACTTAT-AGAACTCA
** * * *
24808681 AAATGTACATTCGGCTAACATATTTATATAATTCATAAAATTAAATTCATCTTATAGAAC
1 AAACATACATTCGGCTAACATA-TTATATAATTCATACAATTAGATTCAACTTATAGAAC
24808741 ACACACACAC
Statistics
Matches: 268, Mismatches: 26, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
60 83 0.31
61 24 0.09
62 19 0.07
63 88 0.33
64 6 0.02
65 48 0.18
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (62 bp):
AAACATACATTCGGCTAACATATTATATAATTCATACAATTAGATTCAACTTATAGAACTCA
Found at i:24808653 original size:123 final size:122
Alignment explanation
Indices: 24808370--24808740 Score: 510
Period size: 123 Copynumber: 3.0 Consensus size: 122
24808360 TCTTTGTAGC
* * ** *
24808370 AAACATACATTCGGATAACATATATATATAATTCAAACAATTAAATTCATCTTAT-AGAACTCAA
1 AAACATACATT-GGCTAAC--ATATATATAATTCATACAATTAGTTTCAACTTATCA-AACTCAA
* * ** *
24808434 AACATACATTCGACTAACATATATATATATAATTTATACAATTAGCTTCAACTAATAGAACTCA
62 AACATACATTCGGCTAACATAT-T-TATATAATTCATA-AATTAAATTCAACTTATAGAACTCA
* *
24808498 ATACATACATTGGCTAACATATTTATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACA
1 AAACATACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACA
*
24808563 TACATTCGGCTAACATATTTATATAATTCATCAAATTAAATTCAGCTTATAGAACTCA
66 TACATTCGGCTAACATATTTATATAATTCAT-AAATTAAATTCAACTTATAGAACTCA
**
24808621 AAACATACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAATG
1 AAACATACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACA
*
24808686 TACATTCGGCTAACATATTTATATAATTCATAAAATTAAATTCATCTTATAGAAC
66 TACATTCGGCTAACATATTTATATAATTCAT-AAATTAAATTCAACTTATAGAAC
24808741 ACACACACAC
Statistics
Matches: 222, Mismatches: 19, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
123 146 0.66
124 2 0.01
125 57 0.26
126 1 0.00
127 6 0.03
128 10 0.05
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (122 bp):
AAACATACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACA
TACATTCGGCTAACATATTTATATAATTCATAAATTAAATTCAACTTATAGAACTCA
Found at i:24813329 original size:15 final size:14
Alignment explanation
Indices: 24813308--24813343 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
24813298 ATAATCCTTA
*
24813308 ATAATTATCTTAAT
1 ATAATTATCCTAAT
24813322 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
24813337 ATAATTA
1 ATAATTA
24813344 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:24815207 original size:5 final size:5
Alignment explanation
Indices: 24815197--24815258 Score: 54
Period size: 5 Copynumber: 12.0 Consensus size: 5
24815187 AGTAATAAAT
* * *
24815197 AATAA AATAA AATAA AGTAA TAA-ATA AATTA AAGAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA -AATA-A AATAA AATAA AATAA AATAA AATAA
*
24815248 TAAAAA AATAA
1 -AATAA AATAA
24815259 TAAAAAAATC
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
5 39 0.87
6 6 0.13
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:24815299 original size:11 final size:10
Alignment explanation
Indices: 24815190--24815295 Score: 77
Period size: 11 Copynumber: 9.9 Consensus size: 10
24815180 CCAAATAAGT
24815190 AATAAATAATAA
1 AATAAA-AA-AA
*
24815202 AATAAAATAA
1 AATAAAAAAA
* *
24815212 AGTAATAAATA
1 AATAA-AAAAA
* *
24815223 AATTAAAGAA
1 AATAAAAAAA
*
24815233 AATAAAATAA
1 AATAAAAAAA
24815243 AATAATAAAAA
1 AATAA-AAAAA
24815254 AATAATAAAAA
1 AATAA-AAAAA
**
24815265 AATCTCAAAAA
1 AAT-AAAAAAA
24815276 AATAAAAAATA
1 AATAAAAAA-A
24815287 AATAAAAAA
1 AATAAAAAA
24815296 TAAAGATTCG
Statistics
Matches: 75, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
10 26 0.35
11 43 0.57
12 6 0.08
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:24821755 original size:29 final size:29
Alignment explanation
Indices: 24821718--24821773 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
24821708 AAATAAAATC
*
24821718 TTAAAATTAAATAATCCTTA-ATAATTATT
1 TTAAAATT-AATAATCCTAATATAATTATT
* *
24821747 TTAATATTAATTATCCTAATATAATTA
1 TTAAAATTAATAATCCTAATATAATTA
24821774 AAATAGAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (29 bp):
TTAAAATTAATAATCCTAATATAATTATT
Found at i:24829131 original size:24 final size:24
Alignment explanation
Indices: 24829099--24829147 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
24829089 TCAATTCATT
24829099 AGAACTAGGTTCCATTACAACATG
1 AGAACTAGGTTCCATTACAACATG
24829123 AGAACTAGGTTCCATTACAACATG
1 AGAACTAGGTTCCATTACAACATG
24829147 A
1 A
24829148 AAGATCTAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (24 bp):
AGAACTAGGTTCCATTACAACATG
Found at i:24834594 original size:100 final size:101
Alignment explanation
Indices: 24834405--24834634 Score: 286
Period size: 100 Copynumber: 2.2 Consensus size: 101
24834395 TGATCATAAC
* * *
24834405 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCTCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTTATCATATCGGTGCTCACGCCATG
*
24834470 TCCCAGACATGGTCTTACGGGGGACCACTCATCTCG
66 TCCCAGACATGGTCTTACAGGGGACCACTCATCTCG
* *
24834506 ATGCCAACA-CCATGTCTCAGACATGGTCTTACATGGGA-CTTATCATCTCGGTGC-CAACGCCA
1 ATGCCAA-AGCCATGTCCCAGACATGGTCTTACATGGGATCTTATCATATCGGTGCTC-ACGCCA
* *
24834568 TGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
64 TGTCCCAGACATGGTCTTACAGGGGACCACTC---ATCTC---G
*
24834612 ATGCCAATGCCATGTCCCAGACA
1 ATGCCAAAGCCATGTCCCAGACA
24834635 NNNNNNNNNN
Statistics
Matches: 110, Mismatches: 10, Indels: 13
0.83 0.08 0.10
Matches are distributed among these distances:
99 1 0.01
100 47 0.43
101 35 0.32
102 1 0.01
103 5 0.05
106 21 0.19
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (101 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTTATCATATCGGTGCTCACGCCATG
TCCCAGACATGGTCTTACAGGGGACCACTCATCTCG
Found at i:24834624 original size:56 final size:53
Alignment explanation
Indices: 24834405--24834634 Score: 239
Period size: 50 Copynumber: 4.4 Consensus size: 53
24834395 TGATCATAAC
* **
24834405 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATA--TCGG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCTCGG
* ** *
24834457 -TGCTC-ATGCCATGTCCCAGACATGGTCTTACGGGGGACCACTC--ATCTC-G
1 ATGC-CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTCGG
* *
24834506 ATGCCAACACCATGTCTCAGACATGGTCTTACATGGGA-CT-T-ATCATCTCGG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCTCGG
24834557 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCTC--GG
*
24834612 ATGCCAATGCCATGTCCCAGACA
1 ATGCCAACGCCATGTCCCAGACA
24834635 NNNNNNNNNN
Statistics
Matches: 147, Mismatches: 16, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
48 2 0.01
49 3 0.02
50 75 0.51
51 35 0.24
52 2 0.01
53 7 0.05
55 2 0.01
56 21 0.14
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (53 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTCGG
Found at i:24835018 original size:30 final size:30
Alignment explanation
Indices: 24834983--24835040 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
24834973 CCTCGACTCT
*
24834983 AACTTTGT-CAAAATTATAATTTTGCCCCTA
1 AACTTT-TACAAAATTACAATTTTGCCCCTA
* *
24835013 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
24835041 AAGGCTCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:24836633 original size:29 final size:29
Alignment explanation
Indices: 24836590--24836678 Score: 133
Period size: 29 Copynumber: 3.1 Consensus size: 29
24836580 ACCTCACTTT
* *
24836590 TATACCTAAAGATTTAGATCGCTTGTCTC
1 TATACCTAAAGATTTAGATCACTCGTCTC
* *
24836619 TATACCTAAATATTTAGATCACTCGTGTC
1 TATACCTAAAGATTTAGATCACTCGTCTC
*
24836648 TATACCTAAAGATTTAGATCACTCATCTC
1 TATACCTAAAGATTTAGATCACTCGTCTC
24836677 TA
1 TA
24836679 AGTTCCCCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.37
Consensus pattern (29 bp):
TATACCTAAAGATTTAGATCACTCGTCTC
Found at i:24838174 original size:14 final size:14
Alignment explanation
Indices: 24838151--24838206 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
24838141 CTATGGTTAG
*
24838151 GGTTTTGGGTTTTT
1 GGTTTAGGGTTTTT
**
24838165 GGTTTAGGG-TTAG
1 GGTTTAGGGTTTTT
24838178 GGTTTTAGGGTTTTT
1 GG-TTTAGGGTTTTT
24838193 AGGTTTAGGGTTTT
1 -GGTTTAGGGTTTT
24838207 AAAGAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
13 4 0.12
14 15 0.44
15 13 0.38
16 2 0.06
ACGTcount: A:0.09, C:0.00, G:0.38, T:0.54
Consensus pattern (14 bp):
GGTTTAGGGTTTTT
Found at i:24838185 original size:8 final size:8
Alignment explanation
Indices: 24838147--24838207 Score: 55
Period size: 8 Copynumber: 8.4 Consensus size: 8
24838137 TCTGCTATGG
24838147 TTAGGGTT
1 TTAGGGTT
24838155 TT-GGGTT
1 TTAGGGTT
*
24838162 TT-TGG-T
1 TTAGGGTT
24838168 TTAGGG--
1 TTAGGGTT
24838174 TTAGGGTT
1 TTAGGGTT
24838182 TTAGGGTTT
1 TTAGGG-TT
24838191 TTA-GG-T
1 TTAGGGTT
24838197 TTAGGGTT
1 TTAGGGTT
24838205 TTA
1 TTA
24838208 AAGAAAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
6 13 0.29
7 13 0.29
8 14 0.31
9 5 0.11
ACGTcount: A:0.11, C:0.00, G:0.36, T:0.52
Consensus pattern (8 bp):
TTAGGGTT
Found at i:24838377 original size:95 final size:95
Alignment explanation
Indices: 24838202--24838516 Score: 266
Period size: 96 Copynumber: 3.3 Consensus size: 95
24838192 TAGGTTTAGG
* * * * * * * *
24838202 GTTTTAAAGAAAAAATTAAATAAATAAGGGATTAGGGTGT-CTTAATTAAATTAATTATAAAATT
1 GTTTTGAAGGAAAAATCAAATAAATTAGGGTTTAGTGT-TACTTGAGTAAATTAATTAT-AAATT
* * * * * *
24838266 TT--CAAAATTGGTTTAGGTTTCGTATTTATC
64 TTAAAAAAATTAGATTAGGTTTAGTATTAAGC
*
24838296 GTTTGTGAA-GAAAAATCAATTAAATTAGGGTTTAAG-GTTACTTGAGTAAATTAATTA-AAATT
1 GTTT-TGAAGGAAAAATCAAATAAATTAGGGTTT-AGTGTTACTTGAGTAAATTAATTATAAA-T
* *
24838358 TTTAAAAAAATTAGATTAGGGTTTAGTGTTAAGG
63 TTTAAAAAAATTAGATTA-GGTTTAGTATTAAGC
* * *
24838392 GTTTTTAAGGAAAAATGAAATAAATTAGGGTTTAGTGTTACTTGAGTAAATTAATTATAAA-TTC
1 GTTTTGAAGGAAAAATCAAATAAATTAGGGTTTAGTGTTACTTGAGTAAATTAATTATAAATTTT
* * * *
24838456 AAAAAAAATAGATTAGAGTTTAGTGTTTAGG
66 AAAAAAATTAGATTAG-GTTTAGTATTAAGC
* * *
24838487 GTTTTTAAAGAAAAACTTAAATAAATTAGG
1 GTTTTGAAGGAAAAA-TCAAATAAATTAGG
24838517 TTTTGGGGTT
Statistics
Matches: 185, Mismatches: 24, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
92 3 0.02
93 5 0.03
94 41 0.22
95 63 0.34
96 70 0.38
97 3 0.02
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (95 bp):
GTTTTGAAGGAAAAATCAAATAAATTAGGGTTTAGTGTTACTTGAGTAAATTAATTATAAATTTT
AAAAAAATTAGATTAGGTTTAGTATTAAGC
Found at i:24838416 original size:96 final size:95
Alignment explanation
Indices: 24838303--24838516 Score: 306
Period size: 96 Copynumber: 2.2 Consensus size: 95
24838293 ATCGTTTGTG
* *
24838303 AAGAAAAATCAATTAAATTAGGGTTTAAG-GTTACTTGAGTAAATTAATTA-AAATTTTTAAAAA
1 AAGAAAAATCAAATAAATTAGGGTTT-AGTGTTACTTGAGTAAATTAATTATAAA--TTCAAAAA
* *
24838366 AATTAGATTAGGGTTTAGTGTTAAGGGTTTTTA
63 AAATAGATTAGAGTTTAGTGTTAAGGGTTTTTA
* *
24838399 AGGAAAAATGAAATAAATTAGGGTTTAGTGTTACTTGAGTAAATTAATTATAAATTCAAAAAAAA
1 AAGAAAAATCAAATAAATTAGGGTTTAGTGTTACTTGAGTAAATTAATTATAAATTCAAAAAAAA
*
24838464 TAGATTAGAGTTTAGTGTTTAGGGTTTTTA
66 TAGATTAGAGTTTAGTGTTAAGGGTTTTTA
*
24838494 AAGAAAAACTTAAATAAATTAGG
1 AAGAAAAA-TCAAATAAATTAGG
24838517 TTTTGGGGTT
Statistics
Matches: 106, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
95 46 0.43
96 57 0.54
97 3 0.03
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (95 bp):
AAGAAAAATCAAATAAATTAGGGTTTAGTGTTACTTGAGTAAATTAATTATAAATTCAAAAAAAA
TAGATTAGAGTTTAGTGTTAAGGGTTTTTA
Found at i:24838791 original size:126 final size:125
Alignment explanation
Indices: 24838565--24838854 Score: 465
Period size: 126 Copynumber: 2.3 Consensus size: 125
24838555 ATTTAAAAAG
* *
24838565 GCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGAAGACGTTTCT
1 GCTCCCACGTGGACG-TTTTTTGCTATAGTAGCTCCTGAAAAAATAATTTCGAGAAGACGTTTCT
*
24838630 GAGCAAATAGTGCCAAAAACGCTTTAAGTACGATGCTTTGTCAGCAAAAGTACTGAAAGAA
65 GAGCAAATAGTGCCAAAAACGCTTTAAGCACGATGCTTTGTCAGCAAAAGTACTGAAAGAA
* *
24838691 GCTCCCACGTGGACGTATTTTTGCTATAGTAGCTCCTGAAAAAATAATTTCGAGTAGATGTTTCT
1 GCTCCCACGTGGACGT-TTTTTGCTATAGTAGCTCCTGAAAAAATAATTTCGAGAAGACGTTTCT
* *
24838756 GAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGAA
65 GAGCAAATAGTGCCAAAAACGCTTTAAGCACGATGCTTTGTCAGCAAAAGTACTGAAAGAA
*
24838817 GCTCCCACGTGGACGCGTTTTTGCTACT-GTAGCTCCTG
1 GCTCCCACGTGGACG-TTTTTTGCTA-TAGTAGCTCCTG
24838855 TTTGGCCTGA
Statistics
Matches: 153, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
125 1 0.01
126 151 0.99
127 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (125 bp):
GCTCCCACGTGGACGTTTTTTGCTATAGTAGCTCCTGAAAAAATAATTTCGAGAAGACGTTTCTG
AGCAAATAGTGCCAAAAACGCTTTAAGCACGATGCTTTGTCAGCAAAAGTACTGAAAGAA
Found at i:24841474 original size:43 final size:42
Alignment explanation
Indices: 24841393--24841503 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
24841383 ATATTCAGTG
* * *
24841393 ATACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAGG
1 ATACGGGGAATCAGCACTTAGCAACCACTTTCACAATCAAGA
* * * * *
24841435 ATACAGTGGAATCAGCACTTAGCAATCACTTTTAGAATCAATA
1 ATAC-GGGGAATCAGCACTTAGCAACCACTTTCACAATCAAGA
* *
24841478 ATTCGGGGAATCAGTACTTAGCAACC
1 ATACGGGGAATCAGCACTTAGCAACC
24841504 CCTCGAGGAA
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 23 0.41
43 33 0.59
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
ATACGGGGAATCAGCACTTAGCAACCACTTTCACAATCAAGA
Found at i:24841565 original size:41 final size:41
Alignment explanation
Indices: 24841510--24841656 Score: 213
Period size: 41 Copynumber: 3.6 Consensus size: 41
24841500 AACCCCTCGA
*
24841510 GGAATCTGCACTTAGCAACCCATTTTTTATCAGAGTTTCAG
1 GGAATCTGCACTTAGCAACCCCTTTTTTATCAGAGTTTCAG
* * *
24841551 GAAATCTGCACTTAGCAACCCCTTTTTTATTAGAGTTTCGG
1 GGAATCTGCACTTAGCAACCCCTTTTTTATCAGAGTTTCAG
* * *
24841592 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCAG
1 GGAATCTGCACTTAGCAACCCCTTTTTTATCAGAGTTTCAG
* *
24841633 GGAATCTGTACTTAGCAAACCCTT
1 GGAATCTGCACTTAGCAACCCCTT
24841657 ACATTCAATG
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (41 bp):
GGAATCTGCACTTAGCAACCCCTTTTTTATCAGAGTTTCAG
Found at i:24843588 original size:34 final size:35
Alignment explanation
Indices: 24843549--24843616 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 35
24843539 TGTAAATGTA
*
24843549 AATTTCTATTTTATTACATGAAATAATAT-AAAAG
1 AATTTCTATTTTATTACATCAAATAATATCAAAAG
24843583 AATTTCTATTTTATTACATCAAATAATATCAAAA
1 AATTTCTATTTTATTACATCAAATAATATCAAAA
24843617 TATTCAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (35 bp):
AATTTCTATTTTATTACATCAAATAATATCAAAAG
Found at i:24843771 original size:21 final size:22
Alignment explanation
Indices: 24843747--24843794 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
24843737 GCGGGGGTTG
24843747 TGGTTGC-TCCAGT-GGGGATTC
1 TGGTTGCTTCCAGTAGGGGA-TC
24843768 TGGTT-CTTCCAGTAGGGGATC
1 TGGTTGCTTCCAGTAGGGGATC
24843789 TGGTTG
1 TGGTTG
24843795 TTGGTGTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 1 0.04
21 18 0.75
22 5 0.21
ACGTcount: A:0.10, C:0.17, G:0.38, T:0.35
Consensus pattern (22 bp):
TGGTTGCTTCCAGTAGGGGATC
Found at i:24844709 original size:7 final size:7
Alignment explanation
Indices: 24844699--24844724 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
24844689 CATAATACAT
24844699 AATACTA
1 AATACTA
24844706 AATACTA
1 AATACTA
24844713 AATACTA
1 AATACTA
24844720 AATAC
1 AATAC
24844725 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:24845906 original size:11 final size:11
Alignment explanation
Indices: 24845890--24845915 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24845880 GCTTTTTTTA
24845890 AGAGGAATTTG
1 AGAGGAATTTG
24845901 AGAGGAATTTG
1 AGAGGAATTTG
24845912 AGAG
1 AGAG
24845916 AATATTGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (11 bp):
AGAGGAATTTG
Found at i:24846904 original size:109 final size:109
Alignment explanation
Indices: 24846685--24846977 Score: 384
Period size: 111 Copynumber: 2.7 Consensus size: 109
24846675 GGAAAAAAGA
* ** * * *
24846685 ACCCAGTACAGTAAAAAAAATTTGAGTTTTGGTC-TGTCA-ATGACCGGCACCAG-AGTACGAAA
1 ACCCAGTACAGTAAAAAAAATTTTAGTTTTTTTCGTGTCATAT--CAGGTATCAGTA-TACG-AA
*
24846747 AAAAGTAAAAAAAAAATTTTTTTTGAGTGCTGGCCTGTCAATGGCCGGC
62 AAAAGTAAAAAAAAAA-TATTTTTGAGTGCTGGCCTGTCAATGGCCGGC
24846796 ACCCAGTACAGTAAAAAAAATTTTAGTTTTTTTCGTGTCATTATCAGGTATCAGTATACGAAAAA
1 ACCCAGTACAGTAAAAAAAATTTTAGTTTTTTTCGTGTCA-TATCAGGTATCAGTATACGAAAAA
*
24846861 AGTAAAAAAAAAA-ATTTTTGGGTGCTGGCCTGTCAATGGCCGGC
65 AGTAAAAAAAAAATATTTTTGAGTGCTGGCCTGTCAATGGCCGGC
* *
24846905 ATCCAGTACAGTAAAAAAAA--TTAGTTTTTTTCGTGTCA-ATGCAGGTATCAGTATAGGAAAAA
1 ACCCAGTACAGTAAAAAAAATTTTAGTTTTTTTCGTGTCATAT-CAGGTATCAGTATACGAAAAA
24846967 AGTAAAAAAAA
65 AGTAAAAAAAA
24846978 TTTACTGTAC
Statistics
Matches: 167, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
105 2 0.01
106 31 0.19
107 18 0.11
109 48 0.29
111 49 0.29
112 16 0.10
113 1 0.01
114 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (109 bp):
ACCCAGTACAGTAAAAAAAATTTTAGTTTTTTTCGTGTCATATCAGGTATCAGTATACGAAAAAA
GTAAAAAAAAAATATTTTTGAGTGCTGGCCTGTCAATGGCCGGC
Found at i:24846993 original size:109 final size:107
Alignment explanation
Indices: 24846685--24846977 Score: 344
Period size: 109 Copynumber: 2.7 Consensus size: 107
24846675 GGAAAAAAGA
** * * *
24846685 ACCCAGTACAGTAAAAAAAATTTGAGTTTTGGTC-TGTCA-ATGACCGGCACCAG-AGTACGAAA
1 ACCCAGTACAGTAAAAAAAATTT-AGTTTTTTTCGTGTCATAT--CAGGTATCAGTA-TACG-AA
* ** *
24846747 AAAAGTAAAAAAAAAATTTTTTTTGAGTGCTGGCCTGTCAATGGCCGGC
61 AAAAGTAAAAAAAAAA--ATTACTGGGTGCTGGCCTGTCAATGGCCGGC
24846796 ACCCAGTACAGTAAAAAAAATTTTAGTTTTTTTCGTGTCATTATCAGGTATCAGTATACGAAAAA
1 ACCCAGTACAGTAAAAAAAA-TTTAGTTTTTTTCGTGTCA-TATCAGGTATCAGTATACGAAAAA
**
24846861 AGTAAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGC
64 AGTAAAAAAAAAAATTACTGGGTGCTGGCCTGTCAATGGCCGGC
* *
24846905 ATCCAGTACAGTAAAAAAAA-TTAGTTTTTTTCGTGTCA-ATGCAGGTATCAGTATAGGAAAAAA
1 ACCCAGTACAGTAAAAAAAATTTAGTTTTTTTCGTGTCATAT-CAGGTATCAGTATACGAAAAAA
24846968 GTAAAAAAAA
65 GTAAAAAAAA
24846978 TTTACTGTAC
Statistics
Matches: 167, Mismatches: 9, Indels: 17
0.87 0.05 0.09
Matches are distributed among these distances:
105 2 0.01
106 31 0.19
107 18 0.11
109 48 0.29
111 46 0.28
112 19 0.11
113 1 0.01
114 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (107 bp):
ACCCAGTACAGTAAAAAAAATTTAGTTTTTTTCGTGTCATATCAGGTATCAGTATACGAAAAAAG
TAAAAAAAAAAATTACTGGGTGCTGGCCTGTCAATGGCCGGC
Found at i:24847087 original size:105 final size:106
Alignment explanation
Indices: 24846978--24847176 Score: 294
Period size: 105 Copynumber: 1.9 Consensus size: 106
24846968 GTAAAAAAAA
* * *
24846978 TTTACTGTACTGGGTGTCGGCCATTGACAGGCCAGAACCC-AAAT-TTTTTTTTTACTTTTTTTC
1 TTTACTGTACTAGGTGCCGGCCATTGACAGGCCAGAACCCAAAATAATTTTTTTTACTTTTTTTC
* * *
24847041 GTACTCTGGTGCCGACCATTGATAGACCAAAACTCGAATTTT
66 ATACT-GGGTGCCGACCATTGACAGACCAAAACTCGAATTTT
* *
24847083 TTTACTGTACTAGGTGCCGGCCATTGACAGGCCAGCACCCAAAATAATTTTTTTTCCTTTTTTTC
1 TTTACTGTACTAGGTGCCGGCCATTGACAGGCCAGAACCCAAAATAATTTTTTTTACTTTTTTTC
*
24847148 ATACTGGGTGCCGGCCATTGACAGACCAA
66 ATACTGGGTGCCGACCATTGACAGACCAA
24847177 CACCCAAAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
105 37 0.45
106 25 0.30
107 21 0.25
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (106 bp):
TTTACTGTACTAGGTGCCGGCCATTGACAGGCCAGAACCCAAAATAATTTTTTTTACTTTTTTTC
ATACTGGGTGCCGACCATTGACAGACCAAAACTCGAATTTT
Found at i:24847159 original size:59 final size:59
Alignment explanation
Indices: 24847090--24847205 Score: 189
Period size: 59 Copynumber: 2.0 Consensus size: 59
24847080 TTTTTTACTG
* *
24847090 TACTAGGTGCCGGCCATTGACAGGCCAGCACCCAAAATAATTTTTTTTCCTT-TTTTTCA
1 TACTAGGTGCCGGCCATTGACAGACCAACACCCAAAA-AATTTTTTTTCCTTCTTTTTCA
*
24847149 TACTGGGTGCCGGCCATTGACAGACCAACACCCAAAAAATTTTTTTTCCTTCTTTTT
1 TACTAGGTGCCGGCCATTGACAGACCAACACCCAAAAAATTTTTTTTCCTTCTTTTT
24847206 TGTATATCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
58 14 0.26
59 39 0.74
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (59 bp):
TACTAGGTGCCGGCCATTGACAGACCAACACCCAAAAAATTTTTTTTCCTTCTTTTTCA
Found at i:24847424 original size:19 final size:19
Alignment explanation
Indices: 24847387--24847425 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
24847377 TTCAGGTTAT
*
24847387 TTTGGTTATTGTTTTTAAA
1 TTTGGTTATTGTTTGTAAA
24847406 TTTGAGTTATT-TTTGTAAA
1 TTTG-GTTATTGTTTGTAAA
24847425 T
1 T
24847426 ATAATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (19 bp):
TTTGGTTATTGTTTGTAAA
Found at i:24847760 original size:25 final size:26
Alignment explanation
Indices: 24847712--24847765 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
24847702 TTAAAAATAA
*
24847712 TTAAATAGTATTTAAAAATTTTAATT
1 TTAAATAGTATTTAAAAATTTTAAAT
24847738 TTAAATAG-ATTT-AAAATTGTTAAAT
1 TTAAATAGTATTTAAAAATT-TTAAAT
24847763 TTA
1 TTA
24847766 GAAATAATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 6 0.23
25 12 0.46
26 8 0.31
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (26 bp):
TTAAATAGTATTTAAAAATTTTAAAT
Found at i:24850094 original size:29 final size:30
Alignment explanation
Indices: 24850013--24850095 Score: 87
Period size: 31 Copynumber: 2.7 Consensus size: 30
24850003 ACGTAAATGT
* * *
24850013 AATTCAAAAGTATAGGGACTAAAATTGATTA
1 AATT-AAAAGTACATGGACTAAAATTGATCA
* *
24850044 ATTTGAAAAGTACATGGGCTAAAATTGATCA
1 AATT-AAAAGTACATGGACTAAAATTGATCA
*
24850075 AATT-ATAGTACATGGACTAAA
1 AATTAAAAGTACATGGACTAAA
24850096 TCTACAACTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
29 15 0.35
31 28 0.65
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (30 bp):
AATTAAAAGTACATGGACTAAAATTGATCA
Found at i:24851173 original size:22 final size:22
Alignment explanation
Indices: 24851148--24851194 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
24851138 AAATTTTTAA
* *
24851148 TATTGTAATATATTATTTTATT
1 TATTGTAATATATTATGTAATT
* *
24851170 TATTTTTATATATTATGTAATT
1 TATTGTAATATATTATGTAATT
24851192 TAT
1 TAT
24851195 ATCACATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (22 bp):
TATTGTAATATATTATGTAATT
Found at i:24855117 original size:20 final size:21
Alignment explanation
Indices: 24855087--24855179 Score: 68
Period size: 20 Copynumber: 4.4 Consensus size: 21
24855077 TCAAAGATAT
24855087 TTGTAATTAATA-TATATTATA
1 TTGT-ATTAATATTATATTATA
* *
24855108 TTGTATTAAT-TTAATAAATAAA
1 TTGTATTAATATT-AT-ATTATA
*
24855130 TAAGTAATT-ATATTATATTATA
1 T-TGT-ATTAATATTATATTATA
*
24855152 TTATATT-ATATTATATTATA
1 TTGTATTAATATTATATTATA
*
24855172 TTATATTA
1 TTGTATTA
24855180 TGAACAAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
20 30 0.52
21 7 0.12
22 10 0.17
23 6 0.10
24 5 0.09
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
TTGTATTAATATTATATTATA
Found at i:24855146 original size:5 final size:5
Alignment explanation
Indices: 24855136--24855180 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
24855126 TAAATAAGTA
24855136 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
24855181 GAACAAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:24856221 original size:22 final size:22
Alignment explanation
Indices: 24856159--24856238 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
24856149 TAGCATGTTG
*
24856159 GTGCTCTTTGATTACTAGCACGTCA
1 GTGCTCTTTG--TA-TAGCACATCA
* ** * *
24856184 ATGCTCTCCGTTTAGCACATCG
1 GTGCTCTTTGTATAGCACATCA
* *
24856206 GTGCTCTTTGTATAGCACTTTA
1 GTGCTCTTTGTATAGCACATCA
24856228 GTGCTCTTTGT
1 GTGCTCTTTGT
24856239 TCATTAGTGC
Statistics
Matches: 42, Mismatches: 13, Indels: 3
0.72 0.22 0.05
Matches are distributed among these distances:
22 34 0.81
23 1 0.02
25 7 0.17
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (22 bp):
GTGCTCTTTGTATAGCACATCA
Found at i:24858127 original size:22 final size:22
Alignment explanation
Indices: 24858065--24858144 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
24858055 TAGCATGTTG
*
24858065 GTGCTCTTTGATTACTAGCACGTCA
1 GTGCTCTTTG--TA-TAGCACATCA
* ** * *
24858090 ATGCTCTCCGTTTAGCACATCG
1 GTGCTCTTTGTATAGCACATCA
* *
24858112 GTGCTCTTTGTATAGCACTTTA
1 GTGCTCTTTGTATAGCACATCA
24858134 GTGCTCTTTGT
1 GTGCTCTTTGT
24858145 TCATTAGTGC
Statistics
Matches: 42, Mismatches: 13, Indels: 3
0.72 0.22 0.05
Matches are distributed among these distances:
22 34 0.81
23 1 0.02
25 7 0.17
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (22 bp):
GTGCTCTTTGTATAGCACATCA
Found at i:24859853 original size:17 final size:17
Alignment explanation
Indices: 24859812--24859859 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
24859802 CATTGTCCCC
*
24859812 AATGCATTGAC-ATGAA
1 AATGCAATGACAATGAA
* *
24859828 TATGTAATGACAATGAA
1 AATGCAATGACAATGAA
*
24859845 AATGCAATGAGAATG
1 AATGCAATGACAATG
24859860 TATACTTATC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.25
Consensus pattern (17 bp):
AATGCAATGACAATGAA
Found at i:24881302 original size:33 final size:33
Alignment explanation
Indices: 24881260--24881344 Score: 107
Period size: 33 Copynumber: 2.5 Consensus size: 33
24881250 TACACTTTGT
*
24881260 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
** *
24881293 TTGGTGTGTTGGAGGGATTAGCTCGTGTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
*
24881326 TCTTGTGTGTTTGGTTGGA
1 T-TGGTGTG-TTGGTTGGA
24881345 CTGACAATGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 30 0.70
34 6 0.14
35 7 0.16
ACGTcount: A:0.13, C:0.08, G:0.38, T:0.41
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
Found at i:24883992 original size:20 final size:20
Alignment explanation
Indices: 24883967--24884007 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
24883957 TTAAAAAGAA
24883967 AAAAT-AATAAAGAGAAAAAT
1 AAAATAAATAAA-AGAAAAAT
*
24883987 AAAATAAATAAAATAAAAAT
1 AAAATAAATAAAAGAAAAAT
24884007 A
1 A
24884008 TGCTAGAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (20 bp):
AAAATAAATAAAAGAAAAAT
Found at i:24886371 original size:14 final size:14
Alignment explanation
Indices: 24886352--24886387 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
24886342 TTGATTGCCA
*
24886352 GTAAAATGTTTTCT
1 GTAAAATGATTTCT
24886366 GTAAAATGATTTCT
1 GTAAAATGATTTCT
*
24886380 GGAAAATG
1 GTAAAATG
24886388 CTTTACTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (14 bp):
GTAAAATGATTTCT
Found at i:24887238 original size:10 final size:10
Alignment explanation
Indices: 24887223--24887248 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
24887213 TCATTAAGTG
24887223 CTAACAAATA
1 CTAACAAATA
24887233 CTAACAAATA
1 CTAACAAATA
24887243 CTAACA
1 CTAACA
24887249 GATCAGTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.23, G:0.00, T:0.19
Consensus pattern (10 bp):
CTAACAAATA
Found at i:24889053 original size:38 final size:39
Alignment explanation
Indices: 24888975--24889053 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 39
24888965 GGATCGGTGG
* * *
24888975 CAAAAAATGGATCTAACCCCATATAGAGAAAATACTAAA
1 CAAAAAATGGATCAAACCCCAAATAGAGAAAATACAAAA
* *
24889014 CAAAAAATGGATCAAACCGCAAAT-GA-AGAAATTCAAAA
1 CAAAAAATGGATCAAACCCCAAATAGAGA-AAATACAAAA
24889052 CA
1 CA
24889054 GATTCGTTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
37 1 0.03
38 12 0.35
39 21 0.62
ACGTcount: A:0.56, C:0.18, G:0.11, T:0.15
Consensus pattern (39 bp):
CAAAAAATGGATCAAACCCCAAATAGAGAAAATACAAAA
Found at i:24890889 original size:21 final size:21
Alignment explanation
Indices: 24890847--24890890 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
24890837 ATTAAAAGTT
*
24890847 AAATTAAAAACAAAATTACTA
1 AAATTAAAAACAAAATGACTA
*
24890868 AAATTAAAATA-AAAATGCCTA
1 AAATTAAAA-ACAAAATGACTA
24890889 AA
1 AA
24890891 TTAGTAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (21 bp):
AAATTAAAAACAAAATGACTA
Found at i:24892032 original size:7 final size:7
Alignment explanation
Indices: 24892001--24892035 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
24891991 AATTTAAATA
24892001 AAATGAG
1 AAATGAG
24892008 AAAGTGAG
1 AAA-TGAG
*
24892016 AAGTGAG
1 AAATGAG
24892023 AAATGAG
1 AAATGAG
24892030 AAATGA
1 AAATGA
24892036 TCCAAGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.54, C:0.00, G:0.31, T:0.14
Consensus pattern (7 bp):
AAATGAG
Found at i:24894713 original size:20 final size:20
Alignment explanation
Indices: 24894688--24894730 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
24894678 AAAACTTAAA
24894688 CTTGTTGATAAAACTCGTTT
1 CTTGTTGATAAAACTCGTTT
24894708 CTTGTTGATAAAACTCGTTT
1 CTTGTTGATAAAACTCGTTT
24894728 CTT
1 CTT
24894731 AAGTTTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (20 bp):
CTTGTTGATAAAACTCGTTT
Found at i:24895443 original size:26 final size:26
Alignment explanation
Indices: 24895413--24895476 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
24895403 AACAAAGCTG
24895413 CCAGTAACAGTAATGCAGCAGGGCTA
1 CCAGTAACAGTAATGCAGCAGGGCTA
* *
24895439 CCAGTAATAGTAATGCAGCAGGGCTG
1 CCAGTAACAGTAATGCAGCAGGGCTA
24895465 CCAGTAACAGTA
1 CCAGTAACAGTA
24895477 TATGTGGCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.17
Consensus pattern (26 bp):
CCAGTAACAGTAATGCAGCAGGGCTA
Found at i:24895684 original size:27 final size:27
Alignment explanation
Indices: 24895654--24895879 Score: 296
Period size: 27 Copynumber: 8.4 Consensus size: 27
24895644 TATAAAAGTT
*
24895654 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
24895681 ATTTTACCCTTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
24895708 ATTTTACCCATCGAGGTTATTTTG-TA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
24895734 ATTTTACCCTTCGAGGGTATATCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
24895761 ATTTTACCCTTCGAGGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* * *
24895788 ATTTTTCCCTT-TAGGGGTATTTCAATA
1 ATTTTACCCTTCGA-GGGTATTTCGATA
*
24895815 ATTTTACCCTTTGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
24895842 ATTTTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
24895869 ATTTTTCCCTT
1 ATTTTACCCTT
24895880 TAGGGGAATT
Statistics
Matches: 176, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 24 0.14
27 150 0.85
28 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:24895855 original size:81 final size:81
Alignment explanation
Indices: 24895654--24895903 Score: 369
Period size: 81 Copynumber: 3.1 Consensus size: 81
24895644 TATAAAAGTT
* * * *
24895654 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTTGGTAATTTTACCC-A
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCGGTAATTTTTCCCTT
* * *
24895718 TCGAGGTTATTT-TGTA
66 TAG-GGGTATTTCAGTA
* *
24895734 ATTTTACCCTTCGAGGGTATATCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTTCCCTT
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCGGTAATTTTTCCCTT
*
24895799 TAGGGGTATTTCAATA
66 TAGGGGTATTTCAGTA
*
24895815 ATTTTACCCTTTGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCGGTAATTTTTCCCTT
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCGGTAATTTTTCCCTT
*
24895880 TAGGGGAATTTCAGTA
66 TAGGGGTATTTCAGTA
24895896 ATTTTACC
1 ATTTTACC
24895904 ATGATTTGCA
Statistics
Matches: 153, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 65 0.42
81 88 0.58
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (81 bp):
ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCGGTAATTTTTCCCTT
TAGGGGTATTTCAGTA
Found at i:24896861 original size:17 final size:19
Alignment explanation
Indices: 24896825--24896864 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
24896815 AATCAGCAAC
*
24896825 AAGAGAAGAAGAAACCGAA
1 AAGAGAAGAAGAAACAGAA
24896844 AAGA-AAGAAGAAA-AGAA
1 AAGAGAAGAAGAAACAGAA
24896861 AAGA
1 AAGA
24896865 TGAGGGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 9 0.45
19 4 0.20
ACGTcount: A:0.70, C:0.05, G:0.25, T:0.00
Consensus pattern (19 bp):
AAGAGAAGAAGAAACAGAA
Found at i:24902548 original size:19 final size:20
Alignment explanation
Indices: 24902532--24902569 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24902522 TCAAAACTTA
*
24902532 TACTTTTTGATAAAACTCAT
1 TACTTGTTGATAAAACTCAT
*
24902552 TTCTTGTTGATAAAACTC
1 TACTTGTTGATAAAACTC
24902570 GTTTCTTAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.45
Consensus pattern (20 bp):
TACTTGTTGATAAAACTCAT
Found at i:24902563 original size:20 final size:20
Alignment explanation
Indices: 24902538--24902576 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
24902528 CTTATACTTT
24902538 TTGATAAAACTCATTTCTTG
1 TTGATAAAACTCATTTCTTG
*
24902558 TTGATAAAACTCGTTTCTT
1 TTGATAAAACTCATTTCTT
24902577 AAGTTTGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.46
Consensus pattern (20 bp):
TTGATAAAACTCATTTCTTG
Found at i:24903304 original size:32 final size:32
Alignment explanation
Indices: 24903268--24903345 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 32
24903258 TCCCAACCCC
24903268 ATGCAGTATGTCATGTCATAAATCATACGTGT
1 ATGCAGTATGTCATGTCATAAATCATACGTGT
* *
24903300 ATGCAGTATGTTATGTCATAAATCATACTTGT
1 ATGCAGTATGTCATGTCATAAATCATACGTGT
24903332 ATGCAGTATGTCAT
1 ATGCAGTATGTCAT
24903346 ACTCAGTAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (32 bp):
ATGCAGTATGTCATGTCATAAATCATACGTGT
Found at i:24903439 original size:27 final size:27
Alignment explanation
Indices: 24903422--24903590 Score: 168
Period size: 27 Copynumber: 6.3 Consensus size: 27
24903412 TATATAAGTT
*
24903422 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTTACCCTTCAAGGGTATTTAGATA
24903449 ATTTTACCCTTC-AGGTGTATTTTAG-TA
1 ATTTTACCCTTCAAGG-GTA-TTTAGATA
* *
24903476 ATTTTACCCTTCAAGGTTATTTCGATA
1 ATTTTACCCTTCAAGGGTATTTAGATA
* *
24903503 ATTTTACCCTTTAAGGGTATTTCGATA
1 ATTTTACCCTTCAAGGGTATTTAGATA
*** * *
24903530 ATTTTACCCTTTGGGGGTATTTTGGTA
1 ATTTTACCCTTCAAGGGTATTTAGATA
*
24903557 A-TTTA-CCTTCCGAGGGTATTTCAG-TA
1 ATTTTACCCTT-CAAGGGTATTT-AGATA
24903583 ATTTTACC
1 ATTTTACC
24903591 ATGATTCGCA
Statistics
Matches: 122, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
25 4 0.03
26 23 0.19
27 87 0.71
28 8 0.07
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCAAGGGTATTTAGATA
Found at i:24903551 original size:54 final size:54
Alignment explanation
Indices: 24903422--24903590 Score: 193
Period size: 54 Copynumber: 3.1 Consensus size: 54
24903412 TATATAAGTT
* *
24903422 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCC-TTCAGGTGTATTTTAGTA
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTTAAGG-GTATTTCAGTA
*
24903476 ATTTTACCCTTCAAGGTTATTTCGATAATTTTACCCTTTAAGGGTATTTC-GATA
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTTAAGGGTATTTCAG-TA
*** * * **
24903530 ATTTTACCCTTTGGGGGTATTTTGGTAA-TTTA-CCTTCCGAGGGTATTTCAGTA
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTT-TAAGGGTATTTCAGTA
24903583 ATTTTACC
1 ATTTTACC
24903591 ATGATTCGCA
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
52 4 0.04
53 25 0.25
54 66 0.66
55 5 0.05
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.44
Consensus pattern (54 bp):
ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTTAAGGGTATTTCAGTA
Found at i:24903558 original size:81 final size:80
Alignment explanation
Indices: 24903422--24903590 Score: 234
Period size: 81 Copynumber: 2.1 Consensus size: 80
24903412 TATATAAGTT
*
24903422 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCAGGTGTATTTTAGTAATTTTACCCTT
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCAGGGGTATTTTAGTAA-TTTA-CCTT
*
24903487 -CAAGGTTATTTC-GATA
64 CCAAGGGTATTTCAG-TA
* ** *
24903503 ATTTTACCCTTTAAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTTGGTAATTTACCTTCC
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCAGGGGTATTTTAGTAATTTACCTTCC
*
24903568 GAGGGTATTTCAGTA
66 AAGGGTATTTCAGTA
24903583 ATTTTACC
1 ATTTTACC
24903591 ATGATTCGCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 4 0.05
80 24 0.30
81 51 0.65
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.44
Consensus pattern (80 bp):
ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCAGGGGTATTTTAGTAATTTACCTTCC
AAGGGTATTTCAGTA
Found at i:24911906 original size:24 final size:24
Alignment explanation
Indices: 24911874--24911932 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
24911864 GCTATCCGGT
24911874 GCTACCCGTTAATTGCTCTTC-AGA
1 GCTACCCGTTAATTGCTCTTCGA-A
*
24911898 GCTACCCGTTCATTGCTCTTCGAA
1 GCTACCCGTTAATTGCTCTTCGAA
24911922 GCTACCCGTTA
1 GCTACCCGTTA
24911933 TAGGCTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (24 bp):
GCTACCCGTTAATTGCTCTTCGAA
Found at i:24911939 original size:24 final size:24
Alignment explanation
Indices: 24911874--24911941 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 24
24911864 GCTATCCGGT
24911874 GCTACCCGTTA-ATTGCTCTTCAGA
1 GCTACCCGTTATA-TGCTCTTCAGA
24911898 GCTACCCGTTCAT-TGCTCTTC-GAA
1 GCTACCCGTT-ATATGCTCTTCAG-A
*
24911922 GCTACCCGTTATAGGCTCTT
1 GCTACCCGTTATATGCTCTT
24911942 TGTGAGCTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
23 3 0.08
24 35 0.90
25 1 0.03
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.34
Consensus pattern (24 bp):
GCTACCCGTTATATGCTCTTCAGA
Found at i:24912013 original size:24 final size:25
Alignment explanation
Indices: 24911944--24912013 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
24911934 AGGCTCTTTG
** * *
24911944 TGAGCTTCCTGTTATATTGCCCAGA
1 TGAGCTTCCCATTATAATGCTCAGA
* *
24911969 TAAGCTTCCCATTACAATGCTCA-A
1 TGAGCTTCCCATTATAATGCTCAGA
*
24911993 TGAGCTTCCCATTATAGTGCT
1 TGAGCTTCCCATTATAATGCT
24912014 TGAGAGAGAG
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
24 19 0.53
25 17 0.47
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (25 bp):
TGAGCTTCCCATTATAATGCTCAGA
Found at i:24916123 original size:24 final size:24
Alignment explanation
Indices: 24916091--24916138 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
24916081 CCGTTGAAGG
24916091 TATTAGAGTTGATCTGAGTAAAAC
1 TATTAGAGTTGATCTGAGTAAAAC
24916115 TATTAGAGTTGATCTGAGTAAAAC
1 TATTAGAGTTGATCTGAGTAAAAC
24916139 ATCAGCTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
TATTAGAGTTGATCTGAGTAAAAC
Done.