Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 79 of 141
Found at i:25885614 original size:23 final size:22
Alignment explanation
Indices: 25885571--25885628 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
25885561 AAAGGGTATC
* *
25885571 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
25885592 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
25885615 TACATATCATATCT
1 TACAAATCATATCT
25885629 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:25885631 original size:19 final size:19
Alignment explanation
Indices: 25885584--25885681 Score: 106
Period size: 19 Copynumber: 4.8 Consensus size: 19
25885574 AAATTAAATC
*
25885584 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
25885604 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
25885626 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
25885647 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
25885666 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
25885682 CTCGAAGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
19 33 0.48
21 18 0.26
22 7 0.10
23 11 0.16
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:25885644 original size:21 final size:21
Alignment explanation
Indices: 25885618--25885680 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
25885608 CTAAGATTAC
25885618 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
25885639 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAGATTGCAT
25885658 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
25885679 AT
1 AT
25885681 CCTCGAAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
19 19 0.47
21 21 0.52
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:25886146 original size:128 final size:129
Alignment explanation
Indices: 25885966--25886217 Score: 303
Period size: 128 Copynumber: 2.0 Consensus size: 129
25885956 AGATGAATTT
* * * *
25885966 GATGCGATCTGCTCTACTGTAATTTCAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
* * *
25886031 ACTTTAAGGAGATAGGATT-T-GTTTATTTAGTCTGCTCCACTACAACTTCAGGAAGATAAGACT
66 ACTTCAAGGAGATAGGATTATCG--GATTTAATCTGCTCCACTACAACTTCAGGAAGATAAGACT
25886094 A
129 A
* ** * * * *
25886095 GATGCGTTCTGCTCT-CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTTCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
* * * *
25886159 ACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
66 ACTTCAAGGAGATAGGATTATCGGATTTAATCTGCTCCACTACAACTTCAGGAAGATAA
25886218 AATTTGCCAT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
128 87 0.84
129 15 0.15
130 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (129 bp):
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
ACTTCAAGGAGATAGGATTATCGGATTTAATCTGCTCCACTACAACTTCAGGAAGATAAGACTA
Found at i:25886161 original size:44 final size:44
Alignment explanation
Indices: 25886110--25886217 Score: 137
Period size: 44 Copynumber: 2.5 Consensus size: 44
25886100 GTTCTGCTCT
* * *
25886110 CTGCAACTTCAGAGAGATAAGATCCA-AGGTTTTAATCCGCTTCA
1 CTGCAACTTCAGGGAGATAAGAT-CATAGGCTTTAATCCGCTCCA
* * * *
25886154 CTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCCGCTCCA
25886198 CTGCAACTTCAGGGAGATAA
1 CTGCAACTTCAGGGAGATAA
25886218 AATTTGCCAT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 1 0.02
44 54 0.98
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCCGCTCCA
Found at i:25886578 original size:44 final size:44
Alignment explanation
Indices: 25886524--25886902 Score: 383
Period size: 44 Copynumber: 8.7 Consensus size: 44
25886514 GCTATTTTTC
* ** * *
25886524 ACCTACTCCACTGCTGCTCAGGGAGATAGGGCTCACGATCTCCA
1 ACCTATTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCA
*
25886568 ACCTATTCCACTGCTGACT-AGGGAGATAGGA-CCTACAATCTTCA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTC-ACAATCTTCA
* * *
25886612 ATCTATTCCACTGCTGC-CTAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGCTC-AGGGAGATAGGATTCACAATCTTCA
*
25886656 ACCTATTCCACTGCTGACT-AGGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCA
25886700 ACCTATTCCACTGCTG-TCCAGGGAGATAGGATT--C--T-TT-A
1 ACCTATTCCACTGCTGCT-CAGGGAGATAGGATTCACAATCTTCA
* * *
25886738 ATCTATTCCACTGCTGC-CTAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGCTC-AGGGAGATAGGATTCACAATCTTCA
*
25886782 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTTAATA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTCACAATC-TT--CA
* * * *
25886829 ACTTATTTCACTGTTG-TCCAAGGAGATAGGATTCACAATCTTCA
1 ACCTATTCCACTGCTGCT-CAGGGAGATAGGATTCACAATCTTCA
25886873 ACCTATTCCACTGCTGAC-CAGGGAGATAGG
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGG
25886903 GCTGGGGTCA
Statistics
Matches: 282, Mismatches: 28, Indels: 50
0.78 0.08 0.14
Matches are distributed among these distances:
37 1 0.00
38 29 0.10
39 2 0.01
40 2 0.01
42 3 0.01
43 4 0.01
44 196 0.70
45 8 0.03
46 2 0.01
47 35 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
ACCTATTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCA
Found at i:25886785 original size:82 final size:84
Alignment explanation
Indices: 25886570--25886902 Score: 386
Period size: 82 Copynumber: 3.9 Consensus size: 84
25886560 GATCTCCAAC
* *
25886570 CTATTCCACTGCTGACTAGGGAGATAGGA-CCTACAATCTTCAATCTATTCCACTGCTG-CCTAG
1 CTATTCCACTGCTGACTAGGGAGATAGGATTC-ACAATCTTCAACCTATTCCACTGCTGACC-AG
* * *
25886633 GGAGATAGAATTCTCAATCTTCAAC
64 GGAGATAGGA-T-T--ATCTTTAAT
* *
25886658 CTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGGG
1 CTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGG
25886723 AGATAGGA-T-TCTTTAAT
66 AGATAGGATTATCTTTAAT
* * *
25886740 CTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGG
1 CTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGG
25886805 AGATAGGATTCACAATCTTTAAT
66 AGATAGGATT----ATCTTTAAT
* * * * *
25886828 AACTTATTTCACTGTTGTCCAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCA
1 --C-TATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCA
25886893 GGGAGATAGG
63 GGGAGATAGG
25886903 GCTGGGGTCA
Statistics
Matches: 216, Mismatches: 18, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
82 74 0.34
83 1 0.00
85 1 0.00
88 72 0.33
89 3 0.01
90 1 0.00
91 64 0.30
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (84 bp):
CTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGG
AGATAGGATTATCTTTAAT
Found at i:25886791 original size:126 final size:126
Alignment explanation
Indices: 25886524--25886862 Score: 455
Period size: 126 Copynumber: 2.6 Consensus size: 126
25886514 GCTATTTTTC
* ** * ** * *
25886524 ACCTACTCCACTGCTG-CTCAGGGAGATAGGGCTCACGATCTCCAACCTATTCCACTGCTGACTA
1 ACCTATTCCACTGCTGACT-AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCA
25886588 GGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCT
65 GGGAGATAGGA--T----TCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCT
25886653 TCA
124 TCA
25886656 ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
1 ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
*
25886721 GGAGATAGGATTCTTTAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTCA
66 GGAGATAGGATTCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTCA
* * * *
25886782 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAATAACTTATTTCACTGTTGTC
1 ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATC-TT--TAACCTATTCCACTGCTGTC
*
25886847 CAAGGAGATAGGATTC
63 CAGGGAGATAGGATTC
25886863 ACAATCTTCA
Statistics
Matches: 189, Mismatches: 14, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
126 88 0.47
127 2 0.01
129 32 0.17
130 1 0.01
132 64 0.34
133 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (126 bp):
ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
GGAGATAGGATTCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTCA
Found at i:25887023 original size:88 final size:88
Alignment explanation
Indices: 25886902--25887215 Score: 441
Period size: 88 Copynumber: 3.6 Consensus size: 88
25886892 AGGGAGATAG
* * ** * * *
25886902 GGCTGGGGTCATCAATCTGCTTTGCTGTTGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
1 GGCTGGTGTCTTCAATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
25886967 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* *
25886990 GGCTGGTGTCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTCAGCCTGC
1 GGCTGGTGTCTTCAATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
*
25887055 TCCGCTGTAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * *
25887078 GACTGGTGTCTTCGATCTACTTCACTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
1 GGCTGGTGTCTTCAATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
25887143 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * * *
25887166 GGCTGGTGACTTCGATCTGCTTCACT-TCCAGTACAGGAAGACAAGATCTG
1 GGCTGGTGTCTTCAATCTGCTTCACTGT-CGGTGCAGGAAGGCAAGATCTG
25887216 TTATCTTCTC
Statistics
Matches: 204, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
87 1 0.00
88 203 1.00
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (88 bp):
GGCTGGTGTCTTCAATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
TCCGCTGCAACCCAGGGAGGCAA
Found at i:25887164 original size:44 final size:44
Alignment explanation
Indices: 25886935--25887166 Score: 128
Period size: 44 Copynumber: 5.3 Consensus size: 44
25886925 GCTGTTGGTG
* *
25886935 CAGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACC
* * * * * * ** * ****
25886979 CAGGGAGGCAAG-GCTGGTGTCTTCAATCTGCTTCGCTGTCGGTG
1 CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTG-CAACC
* *
25887023 CAGGAAGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGTAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACC
* * * * * * * * * * ****
25887067 CAGGGAGGCAAGA-CTGGT-GTCTTCGATCTACTTCACTATCGGTG
1 CAGGAAGGCAAGATCTGCTATTTTTAG-CCTGCTCCGCT-GCAACC
25887111 CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACC
*
25887155 CAGGGAGGCAAG
1 CAGGAAGGCAAG
25887167 GCTGGTGACT
Statistics
Matches: 125, Mismatches: 57, Indels: 12
0.64 0.29 0.06
Matches are distributed among these distances:
42 3 0.02
43 29 0.23
44 59 0.47
45 30 0.24
46 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACC
Found at i:25888480 original size:6 final size:6
Alignment explanation
Indices: 25888469--25888496 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
25888459 GGCCTCTCCA
25888469 TTTTCC TTTTCC TTTTCC TTTTCC TTTT
1 TTTTCC TTTTCC TTTTCC TTTTCC TTTT
25888497 TATCACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCC
Found at i:25893172 original size:52 final size:51
Alignment explanation
Indices: 25893079--25893178 Score: 123
Period size: 52 Copynumber: 1.9 Consensus size: 51
25893069 ACTTATATAT
25893079 ATATAAAATACATAATGCATTTATGAAAACAAGGAAAATATAAATATACAC
1 ATATAAAATACATAATGCATTTATGAAAACAAGGAAAATATAAATATACAC
* * * *
25893130 ATATAAAATATATTCATGCATTTACT-AAAA-AATGAAATATATAAGTATA
1 ATATAAAATACA-TAATGCATTTA-TGAAAACAAGGAAA-ATATAAATATA
25893179 ATATAAAAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
51 17 0.40
52 24 0.57
53 1 0.02
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.30
Consensus pattern (51 bp):
ATATAAAATACATAATGCATTTATGAAAACAAGGAAAATATAAATATACAC
Found at i:25893482 original size:15 final size:14
Alignment explanation
Indices: 25893446--25893501 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 14
25893436 ATATGTAGGT
25893446 ATAATAATAATATATA
1 ATAATAATAATA-A-A
25893462 AT-ATAATAATAAA
1 ATAATAATAATAAA
*
25893475 AGTAATAATAACAAA
1 A-TAATAATAATAAA
25893490 ATTAATAA-AATA
1 A-TAATAATAATA
25893502 GACTAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
13 2 0.06
14 5 0.14
15 26 0.74
16 2 0.06
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (14 bp):
ATAATAATAATAAA
Found at i:25893746 original size:19 final size:21
Alignment explanation
Indices: 25893708--25893746 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
25893698 CCTTTTTTAA
*
25893708 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
25893729 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
25893747 AAGAAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:25893935 original size:22 final size:23
Alignment explanation
Indices: 25893908--25893952 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
25893898 GGGTATATAC
25893908 AAATTAAATC-TCTAAGATTACA
1 AAATTAAATCTTCTAAGATTACA
*
25893930 AAATTATATCTTCTAAGATTACA
1 AAATTAAATCTTCTAAGATTACA
25893953 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.36
Consensus pattern (23 bp):
AAATTAAATCTTCTAAGATTACA
Found at i:25893960 original size:22 final size:23
Alignment explanation
Indices: 25893918--25893962 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
25893908 AAATTAAATC
*
25893918 TCTAAGATTACAAAATTATATCT
1 TCTAAGATTACAAAATCATATCT
*
25893941 TCTAAGATTAC-ATATCATATCT
1 TCTAAGATTACAAAATCATATCT
25893963 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (23 bp):
TCTAAGATTACAAAATCATATCT
Found at i:25893965 original size:19 final size:19
Alignment explanation
Indices: 25893941--25894015 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 19
25893931 AATTATATCT
25893941 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
25893960 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
* * *
25893981 TTTAAGATTGCATATTATA
1 TCTAAGATTACATATCATA
* *
25894000 TTTAAGATTGCATATC
1 TCTAAGATTACATATC
25894016 CTCGAAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 31 0.65
21 17 0.35
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.41
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:25893978 original size:21 final size:21
Alignment explanation
Indices: 25893952--25894014 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
25893942 CTAAGATTAC
*
25893952 ATATCATATCTAAGATTGCAT
1 ATATCATATTTAAGATTGCAT
25893973 ATATCATATTTAAGATTGCAT
1 ATATCATATTTAAGATTGCAT
25893994 AT-T-ATATTTAAGATTGCAT
1 ATATCATATTTAAGATTGCAT
25894013 AT
1 AT
25894015 CCTCGAAGAT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 18 0.44
20 1 0.02
21 22 0.54
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (21 bp):
ATATCATATTTAAGATTGCAT
Found at i:25895252 original size:20 final size:20
Alignment explanation
Indices: 25895218--25895263 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
25895208 TTTATATTCT
25895218 TTAAAAAATTATAAA-AAAA
1 TTAAAAAATTATAAAGAAAA
* *
25895237 TTAAAGAATATATAAAGAAAG
1 TTAAAAAAT-TATAAAGAAAA
25895258 TTAAAA
1 TTAAAA
25895264 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 8 0.36
20 6 0.27
21 8 0.36
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (20 bp):
TTAAAAAATTATAAAGAAAA
Found at i:25910725 original size:19 final size:17
Alignment explanation
Indices: 25910700--25910745 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
25910690 TATATATTTG
25910700 TTTTATAATTGTTTATAA
1 TTTTATAATTGTTT-TAA
25910718 TATTTAT-ATT-TTTTAA
1 T-TTTATAATTGTTTTAA
*
25910734 TGTTATAATTGT
1 TTTTATAATTGT
25910746 GATAAGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
15 4 0.17
16 7 0.29
17 4 0.17
18 4 0.17
19 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (17 bp):
TTTTATAATTGTTTTAA
Found at i:25916394 original size:40 final size:40
Alignment explanation
Indices: 25916358--25916476 Score: 134
Period size: 40 Copynumber: 3.0 Consensus size: 40
25916348 ACAAATGCCG
* * *
25916358 CTATAGATCGAGCATTAGAGACGCTTCTGGAAAAATGCCA
1 CTATAGATTGAGCATTAGAGACGCTTCTAGAAAAACGCCA
* *
25916398 CTAAAGATTGAGCATTA-ACGACGCTTTTAGAAAAACGCCA
1 CTATAGATTGAGCATTAGA-GACGCTTCTAGAAAAACGCCA
* * *
25916438 CTATAGGTTGATCATTAGCAG-TGCTTCTAGAAAAACGCC
1 CTATAGATTGAGCATTAG-AGACGCTTCTAGAAAAACGCC
25916477 GCAAAAAATT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 63 0.95
41 1 0.02
42 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (40 bp):
CTATAGATTGAGCATTAGAGACGCTTCTAGAAAAACGCCA
Found at i:25917202 original size:116 final size:116
Alignment explanation
Indices: 25916930--25917294 Score: 471
Period size: 116 Copynumber: 3.2 Consensus size: 116
25916920 AACGATGCCG
* * * * * * *
25916930 TTTTATTTGCATTTTTAGTGGCATTTTTACTAAAACGCTGCAAAAGGATATCTATTAGTGGCGGT
1 TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAATGCCGCAAAAGGATATGTGTTAGTGGCGTT
* ** * * *
25916995 TGTACGAAAAACGCAATAATTATGTTTAAAGTGTTTGCTAGACGTTGTCG-
66 TTTACGAAAAACGCAGCAATTATGTTTTAAGTGTTTGCTAAACATTGTCGT
** * *
25917045 TTTTATCTGCGTTTTTAGTGGTGTTTTTACTAAAATGCCGCAAGAGGATATGTGTTAGTGGCATT
1 TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAATGCCGCAAAAGGATATGTGTTAGTGGCGTT
* * * *
25917110 TTTACGGAAAATGCCGCAATTATGTTTTAAGTGTTTGCTAAACATTTTCGT
66 TTTACGAAAAACGCAGCAATTATGTTTTAAGTGTTTGCTAAACATTGTCGT
* * *
25917161 TTTTATCTGCGTTTCTAGTGGCATTTTGACTAAAATGCCGCAAAAGGATATGTGTTAGTGGTGTT
1 TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAATGCCGCAAAAGGATATGTGTTAGTGGCGTT
* * *
25917226 TTTACGAAAAACACTGCAATTATATTTTAAGTGTTTGCTAAACATTGTCGT
66 TTTACGAAAAACGCAGCAATTATGTTTTAAGTGTTTGCTAAACATTGTCGT
*
25917277 TTTTATCTGCGATTTTAG
1 TTTTATCTGCGTTTTTAG
25917295 CTGCGTTAGT
Statistics
Matches: 213, Mismatches: 36, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
115 94 0.44
116 119 0.56
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (116 bp):
TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAATGCCGCAAAAGGATATGTGTTAGTGGCGTT
TTTACGAAAAACGCAGCAATTATGTTTTAAGTGTTTGCTAAACATTGTCGT
Found at i:25917424 original size:23 final size:23
Alignment explanation
Indices: 25917398--25917519 Score: 133
Period size: 23 Copynumber: 5.3 Consensus size: 23
25917388 CCCCACTCAG
*
25917398 ATTTCCCCAATTTCATTTCCCTA
1 ATTTCCCCAATTTCATTTCCCCA
*
25917421 ATTT-CCC-ATTTCCTATTCCCCCA
1 ATTTCCCCAATTT-C-ATTTCCCCA
* *
25917444 ATTTCTCCGATTTCATTTCCCCA
1 ATTTCCCCAATTTCATTTCCCCA
* *
25917467 ATTT-CCCAATTCCTTTTCCCCCA
1 ATTTCCCCAATTTCATTT-CCCCA
*
25917490 ATTTCCCCGATTTCATTTCCCCA
1 ATTTCCCCAATTTCATTTCCCCA
25917513 ATTTCCC
1 ATTTCCC
25917520 AACTGACCTG
Statistics
Matches: 82, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
21 4 0.05
22 13 0.16
23 48 0.59
24 13 0.16
25 4 0.05
ACGTcount: A:0.18, C:0.39, G:0.02, T:0.41
Consensus pattern (23 bp):
ATTTCCCCAATTTCATTTCCCCA
Found at i:25917457 original size:46 final size:46
Alignment explanation
Indices: 25917398--25917521 Score: 203
Period size: 46 Copynumber: 2.7 Consensus size: 46
25917388 CCCCACTCAG
* * *
25917398 ATTTCCCCAATTTCATTTCCCTAATTTCCCATTTCCTATTCCCCCA
1 ATTTCCCCGATTTCATTTCCCCAATTTCCCAATTCCTATTCCCCCA
* *
25917444 ATTTCTCCGATTTCATTTCCCCAATTTCCCAATTCCTTTTCCCCCA
1 ATTTCCCCGATTTCATTTCCCCAATTTCCCAATTCCTATTCCCCCA
25917490 ATTTCCCCGATTTCATTTCCCCAATTTCCCAA
1 ATTTCCCCGATTTCATTTCCCCAATTTCCCAA
25917522 CTGACCTGTC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.19, C:0.39, G:0.02, T:0.40
Consensus pattern (46 bp):
ATTTCCCCGATTTCATTTCCCCAATTTCCCAATTCCTATTCCCCCA
Found at i:25917679 original size:13 final size:12
Alignment explanation
Indices: 25917646--25917679 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
25917636 GGTCAGATTC
*
25917646 TTTTGTTGGCAT
1 TTTTGTTGTCAT
25917658 TTTTGTTGTCAT
1 TTTTGTTGTCAT
25917670 TTTTGCTTGT
1 TTTTG-TTGT
25917680 TCCGTTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.06, C:0.09, G:0.21, T:0.65
Consensus pattern (12 bp):
TTTTGTTGTCAT
Found at i:25918647 original size:46 final size:45
Alignment explanation
Indices: 25918578--25918665 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 45
25918568 TTACTTTTTT
* *
25918578 AAAAATCTTTAATTTCCATTATTTA-TTAGTCACTTAATTTCTAAA
1 AAAAATCTTTAATTTCCACTATTTACATA-TCACTTAATTTCTAAA
* *
25918623 AAAAATCTTTTAATTTTCACTATTTACATATTACTTAATTTCT
1 AAAAATC-TTTAATTTCCACTATTTACATATCACTTAATTTCT
25918666 TGGAATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 7 0.19
46 28 0.76
47 2 0.05
ACGTcount: A:0.36, C:0.14, G:0.01, T:0.49
Consensus pattern (45 bp):
AAAAATCTTTAATTTCCACTATTTACATATCACTTAATTTCTAAA
Found at i:25918930 original size:20 final size:21
Alignment explanation
Indices: 25918886--25918938 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
25918876 TTATTTATTT
25918886 TATATTTTTAAATATTAAAACC
1 TATATTTTT-AATATTAAAACC
**
25918908 TATATTTTTAATA-TATCACC
1 TATATTTTTAATATTAAAACC
25918928 TATATTTTTAA
1 TATATTTTTAA
25918939 ATTCATTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 16 0.55
21 4 0.14
22 9 0.31
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (21 bp):
TATATTTTTAATATTAAAACC
Found at i:25919137 original size:9 final size:9
Alignment explanation
Indices: 25919046--25919304 Score: 127
Period size: 9 Copynumber: 27.7 Consensus size: 9
25919036 ACTAATTTCC
*
25919046 ACATAACAT
1 ACATAACTT
*
25919055 ACATAACTC
1 ACATAACTT
*
25919064 ACATAACAT
1 ACATAACTT
25919073 ACATAACTT
1 ACATAACTT
25919082 A-ATAACTT
1 ACATAACTT
* *
25919090 ATATATATCAT
1 ACATA-A-CTT
25919101 A-ACTCAACTT
1 ACA-T-AACTT
* *
25919111 AAATAACTC
1 ACATAACTT
25919120 ACATAACTT
1 ACATAACTT
25919129 ACATAACTT
1 ACATAACTT
* *
25919138 ATATATACCAT
1 ACATA-A-CTT
25919149 A-ACTCAACTT
1 ACA-T-AACTT
*
25919159 ACATAACTC
1 ACATAACTT
25919168 ACATAACTT
1 ACATAACTT
* *
25919177 ATATATATCAT
1 ACATA-A-CTT
25919188 A-ACTCAACTT
1 ACA-T-AACTT
25919198 ACATAA--T
1 ACATAACTT
*
25919205 ACATAAATAT
1 ACATAACT-T
* * *
25919215 ATATATCAT
1 ACATAACTT
25919224 ATCATAACTT
1 A-CATAACTT
*
25919234 ACATAACTC
1 ACATAACTT
25919243 ACATAACTT
1 ACATAACTT
25919252 ACATAACTT
1 ACATAACTT
25919261 A-ATAACTT
1 ACATAACTT
* * *
25919269 ATGTATATCAT
1 A--CATAACTT
25919280 ATCATAACTT
1 A-CATAACTT
25919290 ACATAACTT
1 ACATAACTT
*
25919299 GCATAA
1 ACATAA
25919305 TACATAAATA
Statistics
Matches: 193, Mismatches: 34, Indels: 46
0.71 0.12 0.17
Matches are distributed among these distances:
7 7 0.04
8 16 0.08
9 108 0.56
10 35 0.18
11 24 0.12
12 3 0.02
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (9 bp):
ACATAACTT
Found at i:25919150 original size:48 final size:47
Alignment explanation
Indices: 25919073--25919177 Score: 183
Period size: 48 Copynumber: 2.2 Consensus size: 47
25919063 CACATAACAT
*
25919073 ACATAACTTAATAACTTATATATATCATAACTCAACTTAAATAACTC
1 ACATAACTTAATAACTTATATATACCATAACTCAACTTAAATAACTC
*
25919120 ACATAACTTACATAACTTATATATACCATAACTCAACTTACATAACTC
1 ACATAACTTA-ATAACTTATATATACCATAACTCAACTTAAATAACTC
25919168 ACATAACTTA
1 ACATAACTTA
25919178 TATATATCAT
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
47 10 0.18
48 45 0.82
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (47 bp):
ACATAACTTAATAACTTATATATACCATAACTCAACTTAAATAACTC
Found at i:25919163 original size:39 final size:39
Alignment explanation
Indices: 25919115--25919252 Score: 194
Period size: 39 Copynumber: 3.6 Consensus size: 39
25919105 CAACTTAAAT
* * *
25919115 AACTCACATAACTTACATAACTTATATATACCATAACTC
1 AACTTACATAACTCACATAACTTATATATATCATAACTC
25919154 AACTTACATAACTCACATAACTTATATATATCATAACTC
1 AACTTACATAACTCACATAACTTATATATATCATAACTC
* *
25919193 AACTTACATAA-T-ACATAA-ATATATATATCATATCAT-
1 AACTTACATAACTCACATAACTTATATATATCATAAC-TC
25919229 AACTTACATAACTCACATAACTTA
1 AACTTACATAACTCACATAACTTA
25919253 CATAACTTAA
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
36 25 0.28
37 8 0.09
38 7 0.08
39 49 0.55
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.33
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTATATATATCATAACTC
Found at i:25919165 original size:14 final size:14
Alignment explanation
Indices: 25919098--25919168 Score: 54
Period size: 14 Copynumber: 4.6 Consensus size: 14
25919088 TTATATATAT
25919098 CATAACTCAACTTA
1 CATAACTCAACTTA
*
25919112 AATAACTCACATAACTTA
1 CATAACT--C--AACTTA
*
25919130 CATAACTTATA-TATA
1 CATAACTCA-ACT-TA
25919145 CCATAACTCAACTTA
1 -CATAACTCAACTTA
25919160 CATAACTCA
1 CATAACTCA
25919169 CATAACTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
14 17 0.38
15 6 0.13
16 10 0.22
18 12 0.27
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (14 bp):
CATAACTCAACTTA
Found at i:25921664 original size:13 final size:14
Alignment explanation
Indices: 25921648--25921676 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
25921638 TTTTAAATAT
25921648 TTATAGT-GTTTAA
1 TTATAGTGGTTTAA
25921661 TTATAGTGGTTTAA
1 TTATAGTGGTTTAA
25921675 TT
1 TT
25921677 TTTTGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (14 bp):
TTATAGTGGTTTAA
Found at i:25922560 original size:43 final size:43
Alignment explanation
Indices: 25922454--25922655 Score: 142
Period size: 43 Copynumber: 4.7 Consensus size: 43
25922444 CGTTTTTAGT
* *
25922454 AAAGCGCCGCTAAAGAACATGACCTTTAGCAGCGTTTGTAATA
1 AAAGCGCCGCTAAAGATCATGACCTTTAGCAGCATTTGTAATA
* * * *
25922497 AAAGCGCCGCTAAAGGTCATGCCCTTTAGCGGCATTTGTGATA
1 AAAGCGCCGCTAAAGATCATGACCTTTAGCAGCATTTGTAATA
* * ** * * *
25922540 AAAGCACCGCTAAAGTTCATGTTCTTTA--ATG-ATGTTTTCTACA
1 AAAGCGCCGCTAAAGATCATGACCTTTAGCA-GCAT-TTGT-AATA
** * *
25922583 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGCTAA-A
1 AAAGCGCCGCTAAAGATCATGACCTTTAGCAGCATTTG-TAATA
* * * * *
25922626 ATAGTGCCTCTAAAGGTCATGACTTTTAGC
1 AAAGCGCCGCTAAAGATCATGACCTTTAGC
25922656 GGCTACCAAA
Statistics
Matches: 125, Mismatches: 27, Indels: 14
0.75 0.16 0.08
Matches are distributed among these distances:
41 2 0.02
42 4 0.03
43 113 0.90
44 4 0.03
45 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCATGACCTTTAGCAGCATTTGTAATA
Found at i:25923909 original size:21 final size:23
Alignment explanation
Indices: 25923884--25923928 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
25923874 ATAAATATAC
25923884 TATT-AATTTAA-TAATATTTAT
1 TATTAAATTTAACTAATATTTAT
25923905 TATTAAATTTAACCTAATATTTAT
1 TATTAAATTTAA-CTAATATTTAT
25923929 CTTGATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 7 0.33
24 10 0.48
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTAAATTTAACTAATATTTAT
Found at i:25926246 original size:16 final size:16
Alignment explanation
Indices: 25926227--25926261 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
25926217 TAGTAATTTT
25926227 AATGTTAAAG-GACTAA
1 AATGTTAAAGTGA-TAA
25926243 AATGTTAAAGTGATAA
1 AATGTTAAAGTGATAA
25926259 AAT
1 AAT
25926262 TACAAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.51, C:0.03, G:0.17, T:0.29
Consensus pattern (16 bp):
AATGTTAAAGTGATAA
Found at i:25926938 original size:45 final size:45
Alignment explanation
Indices: 25926843--25926944 Score: 125
Period size: 45 Copynumber: 2.3 Consensus size: 45
25926833 AAAGAAACGG
* * * *
25926843 ATAAGACCATAATTGAAAGACACTATGGCACTATACCAGAACTGA
1 ATAAGACCATAGTTGAAAGAAACTATGACACTATACCAGAAATGA
**
25926888 ATAAGACCATAGTTGAAAGAAACTATGACA-TCATACTGGAAATGA
1 ATAAGACCATAGTTGAAAGAAACTATGACACT-ATACCAGAAATGA
*
25926933 GTAAGACCATAG
1 ATAAGACCATAG
25926945 CTAAAAGACG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 1 0.02
45 48 0.98
ACGTcount: A:0.45, C:0.17, G:0.18, T:0.21
Consensus pattern (45 bp):
ATAAGACCATAGTTGAAAGAAACTATGACACTATACCAGAAATGA
Found at i:25926965 original size:45 final size:44
Alignment explanation
Indices: 25926931--25927146 Score: 279
Period size: 45 Copynumber: 4.8 Consensus size: 44
25926921 TACTGGAAAT
* *
25926931 GAGTAAGACCATAGCTAAAAGACGTTATGGCATCACGATTTTAAC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCA-TATTTTAAC
* * *
25926976 GAGTAAGACCATAGCTTAAAGACGTTAAGGCATCACAATTTTAAC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCA-TATTTTAAC
*
25927021 GAGTAAGACCATAGCTGAAAGACGTTATGGTATCATGATTTTAAC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCAT-ATTTTAAC
* * * *
25927066 GAGTAAGACTATAGCTGAAAGACGTTATGGCATCACGATTCTAAT
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCA-TATTTTAAC
* * *
25927111 GAGTAAGACCATATCTGAAAGACATTATGACATCAT
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCAT
25927147 GAATCAGGGG
Statistics
Matches: 152, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
45 152 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (44 bp):
GAGTAAGACCATAGCTGAAAGACGTTATGGCATCATATTTTAAC
Found at i:25926997 original size:90 final size:90
Alignment explanation
Indices: 25926889--25927087 Score: 238
Period size: 90 Copynumber: 2.2 Consensus size: 90
25926879 CAGAACTGAA
* * * *
25926889 TAAGACCATAG-TTGAAAGAAACTATGACATCATACTGGAAATGAGTAAGACCATAGCTAAAAGA
1 TAAGACCATAGCTT-AAAGAAACTAAGACATCACAATGGAAACGAGTAAGACCATAGCTAAAAGA
25926953 CGTTATGGCATCACGATTTTAACGAG
65 CGTTATGGCATCACGATTTTAACGAG
*** * *** *
25926979 TAAGACCATAGCTTAAAGACGTTAAGGCATCACAATTTTAACGAGTAAGACCATAGCTGAAAGAC
1 TAAGACCATAGCTTAAAGAAACTAAGACATCACAATGGAAACGAGTAAGACCATAGCTAAAAGAC
* *
25927044 GTTATGGTATCATGATTTTAACGAG
66 GTTATGGCATCACGATTTTAACGAG
* *
25927069 TAAGACTATAGCTGAAAGA
1 TAAGACCATAGCTTAAAGA
25927088 CGTTATGGCA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
90 90 0.98
91 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (90 bp):
TAAGACCATAGCTTAAAGAAACTAAGACATCACAATGGAAACGAGTAAGACCATAGCTAAAAGAC
GTTATGGCATCACGATTTTAACGAG
Found at i:25927088 original size:90 final size:90
Alignment explanation
Indices: 25926931--25927148 Score: 328
Period size: 90 Copynumber: 2.4 Consensus size: 90
25926921 TACTGGAAAT
* * *
25926931 GAGTAAGACCATAGCTAAAAGACGTTATGGCATCACGATTTTAACGAGTAAGACCATAGCTTAAA
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTTAACGAGTAAGACCATAGCTGAAA
*
25926996 GACGTTAAGGCATCACAATTTTAAC
66 GACGTTAAGGCATCACAATTCTAAC
* *
25927021 GAGTAAGACCATAGCTGAAAGACGTTATGGTATCATGATTTTAACGAGTAAGACTATAGCTGAAA
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTTAACGAGTAAGACCATAGCTGAAA
* * *
25927086 GACGTTATGGCATCACGATTCTAAT
66 GACGTTAAGGCATCACAATTCTAAC
* * *
25927111 GAGTAAGACCATATCTGAAAGACATTATGACATCATGA
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGA
25927149 ATCAGGGGAA
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 115 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (90 bp):
GAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTTTAACGAGTAAGACCATAGCTGAAA
GACGTTAAGGCATCACAATTCTAAC
Found at i:25927185 original size:135 final size:134
Alignment explanation
Indices: 25926886--25927145 Score: 306
Period size: 135 Copynumber: 1.9 Consensus size: 134
25926876 TACCAGAACT
* * ** *** *
25926886 GAATAAGACCATAGTTGAAAGAAACTATGACATCAT-ACTGGAAATGAGTAAGACCATAGCTAAA
1 GAATAAGACCATAGCTGAAAGACACTATGGTATCATGA-TTTTAACGAGTAAGACCATAGCTAAA
* * * *
25926950 AGACGTTATGGCATCACGATTTTAACGAGTAAGACCATAGCTTAAAGACGTTAAGGCATCACAAT
65 AGACGTTATGGCATCACGATTCTAACGAGTAAGACCATAGCTGAAAGACATTAAGACATCACAA-
*
25927015 TTTAAC
129 TTCAAC
* ** * *
25927021 GAGTAAGACCATAGCTGAAAGACGTTATGGTATCATGATTTTAACGAGTAAGACTATAGCTGAAA
1 GAATAAGACCATAGCTGAAAGACACTATGGTATCATGATTTTAACGAGTAAGACCATAGCTAAAA
* * *
25927086 GACGTTATGGCATCACGATTCTAATGAGTAAGACCATATCTGAAAGACATTATGACATCA
66 GACGTTATGGCATCACGATTCTAACGAGTAAGACCATAGCTGAAAGACATTAAGACATCA
25927146 TGAATCAGGG
Statistics
Matches: 104, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
135 103 0.99
136 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.25
Consensus pattern (134 bp):
GAATAAGACCATAGCTGAAAGACACTATGGTATCATGATTTTAACGAGTAAGACCATAGCTAAAA
GACGTTATGGCATCACGATTCTAACGAGTAAGACCATAGCTGAAAGACATTAAGACATCACAATT
CAAC
Found at i:25928175 original size:50 final size:50
Alignment explanation
Indices: 25928116--25928216 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
25928106 TGAATTAAGT
25928116 ATGTTTTGGGTCATTTTTGGGTACACACAGCCTGGGACCTAGGCTGTCAC
1 ATGTTTTGGGTCATTTTTGGGTACACACAGCCTGGGACCTAGGCTGTCAC
25928166 ATGTTTTGGGTCATTTTTGGGTACACACAGCCTGGGACCTAGGCTGTCAC
1 ATGTTTTGGGTCATTTTTGGGTACACACAGCCTGGGACCTAGGCTGTCAC
25928216 A
1 A
25928217 CGCCGTGTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.32
Consensus pattern (50 bp):
ATGTTTTGGGTCATTTTTGGGTACACACAGCCTGGGACCTAGGCTGTCAC
Found at i:25928941 original size:21 final size:21
Alignment explanation
Indices: 25928915--25928956 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
25928905 TTTTATGATG
25928915 ATTAGAAACATTTGTACATGA
1 ATTAGAAACATTTGTACATGA
*
25928936 ATTAGAAGCATTTGTACATGA
1 ATTAGAAACATTTGTACATGA
25928957 TTTGAGGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (21 bp):
ATTAGAAACATTTGTACATGA
Found at i:25947440 original size:26 final size:26
Alignment explanation
Indices: 25947404--25947469 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
25947394 ACATATTTTC
*
25947404 TCAAAATTTTACTAAGGGCAGAATCG
1 TCAAAATTTTACTAAGGGCAAAATCG
* * *
25947430 TCAAAATTTTACCAAGGGTAAAATTG
1 TCAAAATTTTACTAAGGGCAAAATCG
*
25947456 TTAAAATTTTACTA
1 TCAAAATTTTACTA
25947470 GGAGTAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACTAAGGGCAAAATCG
Found at i:25947476 original size:26 final size:25
Alignment explanation
Indices: 25947404--25947479 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 25
25947394 ACATATTTTC
* *
25947404 TCAAAATTTTACTAAGGGCAGAATCG
1 TCAAAATTTTACT-AGGGTAAAATCG
* *
25947430 TCAAAATTTTACCAAGGGTAAAATTG
1 TCAAAATTTTA-CTAGGGTAAAATCG
*
25947456 TTAAAATTTTACTAGGAGTAAAAT
1 TCAAAATTTTACTAGG-GTAAAAT
25947480 AGATATGGGA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
25 4 0.10
26 37 0.88
27 1 0.02
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (25 bp):
TCAAAATTTTACTAGGGTAAAATCG
Found at i:25957409 original size:25 final size:26
Alignment explanation
Indices: 25957370--25957437 Score: 88
Period size: 25 Copynumber: 2.7 Consensus size: 26
25957360 TTCTTGAAAT
25957370 TTTACTAGGGG-AAAATAGTCAAA-A
1 TTTACTAGGGGTAAAATAGTCAAAGA
* *
25957394 TTTACTAGGGGTAAAATTGTCAAAGT
1 TTTACTAGGGGTAAAATAGTCAAAGA
*
25957420 TTTGCT-GGGGTAAAATAG
1 TTTACTAGGGGTAAAATAG
25957438 AAATGAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 11 0.29
25 22 0.58
26 5 0.13
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (26 bp):
TTTACTAGGGGTAAAATAGTCAAAGA
Found at i:25958387 original size:9 final size:9
Alignment explanation
Indices: 25958373--25958404 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
25958363 GATCAAGTAA
25958373 AATTAAATT
1 AATTAAATT
25958382 AATTAAATT
1 AATTAAATT
25958391 AATTTAAATT
1 AA-TTAAATT
25958401 AATT
1 AATT
25958405 TGATATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
AATTAAATT
Found at i:25958399 original size:10 final size:10
Alignment explanation
Indices: 25958375--25958405 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
25958365 TCAAGTAAAA
25958375 TTAAATTAA-
1 TTAAATTAAT
25958384 TTAAATTAAT
1 TTAAATTAAT
25958394 TTAAATTAAT
1 TTAAATTAAT
25958404 TT
1 TT
25958406 GATATTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTAAATTAAT
Found at i:25958948 original size:69 final size:68
Alignment explanation
Indices: 25958831--25958964 Score: 196
Period size: 69 Copynumber: 2.0 Consensus size: 68
25958821 ATTATTTTAA
* * * * * *
25958831 TAAATTTAATTTAATATTTATTTTGATAGTATTTTATTAATTTAATATTAAAGTGGTTATCTTAA
1 TAAATTTAATCTAATATTTATCTTAATAGTATTATATTAAATTAATATTAAAGTGATTATCTTAA
25958896 AAT
66 AAT
*
25958899 TAAATTTAATCTAATATTTATCTTAATAAGTATTATATTAAATTAATATTAAAGTGATTATTTTA
1 TAAATTTAATCTAATATTTATCTTAAT-AGTATTATATTAAATTAATATTAAAGTGATTATCTTA
25958964 A
65 A
25958965 TTATATTTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
68 24 0.41
69 34 0.59
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (68 bp):
TAAATTTAATCTAATATTTATCTTAATAGTATTATATTAAATTAATATTAAAGTGATTATCTTAA
AAT
Found at i:25962684 original size:17 final size:17
Alignment explanation
Indices: 25962662--25962698 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
25962652 GTGTATAAAA
25962662 ATGTATTTTGATGCAAG
1 ATGTATTTTGATGCAAG
25962679 ATGTATTTTGATGCAAG
1 ATGTATTTTGATGCAAG
25962696 ATG
1 ATG
25962699 GAAAATTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (17 bp):
ATGTATTTTGATGCAAG
Found at i:25967026 original size:14 final size:13
Alignment explanation
Indices: 25967002--25967054 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 13
25966992 TTTTATGAAT
25967002 TAAAAAATAATTA
1 TAAAAAATAATTA
25967015 TAAAAGAATAATTA
1 TAAAA-AATAATTA
*
25967029 TATTAAAAATAAATCA
1 TA--AAAAAT-AATTA
25967045 TATAAAAATA
1 TA-AAAAATA
25967055 TTTAATATGC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
13 5 0.14
14 11 0.31
15 10 0.29
16 9 0.26
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (13 bp):
TAAAAAATAATTA
Found at i:25967052 original size:16 final size:14
Alignment explanation
Indices: 25967002--25967052 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 14
25966992 TTTTATGAAT
25967002 TAAAAAATAAT-TA
1 TAAAAAATAATATA
25967015 TAAAAGAATAATTATA
1 TAAAA-AATAA-TATA
*
25967031 TTAAAAATAAATCATA
1 TAAAAAAT-AAT-ATA
25967047 TAAAAA
1 TAAAAA
25967053 TATTTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
13 5 0.16
14 5 0.16
15 5 0.16
16 16 0.52
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (14 bp):
TAAAAAATAATATA
Found at i:25970831 original size:13 final size:13
Alignment explanation
Indices: 25970813--25970840 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25970803 CTTTTCTATT
25970813 ATTCAATGGGTTA
1 ATTCAATGGGTTA
25970826 ATTCAATGGGTTA
1 ATTCAATGGGTTA
25970839 AT
1 AT
25970841 GTCTCAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.39
Consensus pattern (13 bp):
ATTCAATGGGTTA
Found at i:25971411 original size:90 final size:91
Alignment explanation
Indices: 25971232--25971401 Score: 218
Period size: 90 Copynumber: 1.9 Consensus size: 91
25971222 GCGGCACCGG
*
25971232 TGAATTTTAAAAAAAAACAATGTCAGATAAAAAGCTGAGACAAGAAAAAATATTTTTTAATGGGT
1 TGAATTTTAAAAAAAAACAATGTCAGATAAAAAGCTGAGACAAGAAAAAATATTTTTTAATAGGT
*
25971297 GTCATCAGTGTGTCAAGCAACACCAA
66 GTCATCAGTGTATCAAGCAACACCAA
* *** * * *
25971323 TGAATTTTTAAAAAAAATGGTGTCA-A-AAAAAGTTGCGACAGGAAAAAAATATTTTTTAATAGG
1 TGAATTTTAAAAAAAAACAATGTCAGATAAAAAGCTGAGACAAG-AAAAAATATTTTTTAATAGG
* *
25971386 TGTCGTCGGTGTATCA
65 TGTCATCAGTGTATCA
25971402 TGTGACACCA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
89 13 0.19
90 33 0.49
91 21 0.31
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (91 bp):
TGAATTTTAAAAAAAAACAATGTCAGATAAAAAGCTGAGACAAGAAAAAATATTTTTTAATAGGT
GTCATCAGTGTATCAAGCAACACCAA
Found at i:25982667 original size:15 final size:15
Alignment explanation
Indices: 25982647--25982699 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
25982637 CACCTTAAAC
25982647 ACAAATATAGTCTTT
1 ACAAATATAGTCTTT
* * * **
25982662 ACAAATAAAAATATAA
1 ACAAAT-ATAGTCTTT
25982678 ACAAATATAGTCTTT
1 ACAAATATAGTCTTT
25982693 ACAAATA
1 ACAAATA
25982700 AAAATATAAT
Statistics
Matches: 27, Mismatches: 10, Indels: 2
0.69 0.26 0.05
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.30
Consensus pattern (15 bp):
ACAAATATAGTCTTT
Found at i:25982683 original size:31 final size:31
Alignment explanation
Indices: 25982647--25982708 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
25982637 CACCTTAAAC
25982647 ACAAATATAGTCTTTACAAATAAAAATATAA
1 ACAAATATAGTCTTTACAAATAAAAATATAA
25982678 ACAAATATAGTCTTTACAAATAAAAATATAA
1 ACAAATATAGTCTTTACAAATAAAAATATAA
25982709 TCTTAAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (31 bp):
ACAAATATAGTCTTTACAAATAAAAATATAA
Found at i:25982730 original size:13 final size:14
Alignment explanation
Indices: 25982707--25982735 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
25982697 ATAAAAATAT
25982707 AATCTTAAATATTA
1 AATCTTAAATATTA
25982721 AATC-TAAATATTA
1 AATCTTAAATATTA
25982734 AA
1 AA
25982736 AATNNNNNNN
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
AATCTTAAATATTA
Found at i:25987360 original size:934 final size:934
Alignment explanation
Indices: 25985547--25987416 Score: 3731
Period size: 934 Copynumber: 2.0 Consensus size: 934
25985537 AGATATAAAT
*
25985547 TGTTCCGTTTATATTAAATCAAATTTGAACAAGTTTTTACATTAAATATATATCAAAAATATTTT
1 TGTTCAGTTTATATTAAATCAAATTTGAACAAGTTTTTACATTAAATATATATCAAAAATATTTT
25985612 TATGTAAATTTAATTATAAAATATTAGTATAAAATAATTTTTAAATAATGATACAAACTCTAAAT
66 TATGTAAATTTAATTATAAAATATTAGTATAAAATAATTTTTAAATAATGATACAAACTCTAAAT
25985677 TGATTCAAAATTGAAGCCCAAAAAAGAAGAATCAAATCAGTATCATTAAACCCCATCTCCATCTC
131 TGATTCAAAATTGAAGCCCAAAAAAGAAGAATCAAATCAGTATCATTAAACCCCATCTCCATCTC
25985742 CATCCTTATCTTCCTATTATTTTAATTATAATCGATTCAGAGTTTATTCATTATTTAAAAATTAT
196 CATCCTTATCTTCCTATTATTTTAATTATAATCGATTCAGAGTTTATTCATTATTTAAAAATTAT
25985807 TTTATATTAATATTTTATATAATTTATAATTAAATTATCATAAATATATGTTTTATATATAATTA
261 TTTATATTAATATTTTATATAATTTATAATTAAATTATCATAAATATATGTTTTATATATAATTA
25985872 ATCTGATTTAAAATAAAAAAAATTGTTCAAATTTGATTTAATAGAGATAAAAAAATTGCTTAAAA
326 ATCTGATTTAAAATAAAAAAAATTGTTCAAATTTGATTTAATAGAGATAAAAAAATTGCTTAAAA
25985937 TTAAAAGATGTTATAAAACAAAGAGAGATGGAGAGAATAAAGAAGAAAGAAAATATGAAAGCAAC
391 TTAAAAGATGTTATAAAACAAAGAGAGATGGAGAGAATAAAGAAGAAAGAAAATATGAAAGCAAC
25986002 AGAGGCTGTATTTTATTGATCAAAATGGGTGACTACAATGATTCACCAGAGTTTCTATTTATAGA
456 AGAGGCTGTATTTTATTGATCAAAATGGGTGACTACAATGATTCACCAGAGTTTCTATTTATAGA
25986067 CATAAGAAGTATAAAAGAAGTAAGATCTAATTCTAATAACTATTAGAATTTAAAGTACATTAAAA
521 CATAAGAAGTATAAAAGAAGTAAGATCTAATTCTAATAACTATTAGAATTTAAAGTACATTAAAA
25986132 CTTTATCTTGATCATGATGGACATCCACTTAATAAGATATTCATAACACTCCCCATTGGATGTCC
586 CTTTATCTTGATCATGATGGACATCCACTTAATAAGATATTCATAACACTCCCCATTGGATGTCC
25986197 ATTGGTAGATAATGTACCTTGTTAAAACCTTATTAGGAAGAATCTTGTGGGATAAACTATAATAC
651 ATTGGTAGATAATGTACCTTGTTAAAACCTTATTAGGAAGAATCTTGTGGGATAAACTATAATAC
25986262 GTATAATATGCTGCCTCATTAAAAACCTTACCAGGAAAACCTAATGGGACAAAACCTCGATTAAG
716 GTATAATATGCTGCCTCATTAAAAACCTTACCAGGAAAACCTAATGGGACAAAACCTCGATTAAG
25986327 GGAAAAAGAGTGCAATGCGTATTTACTCTCCCTCATGAAAACATCACATATTTTCTCATATTCGA
781 GGAAAAAGAGTGCAATGCGTATTTACTCTCCCTCATGAAAACATCACATATTTTCTCATATTCGA
25986392 CGTATTCAATCTTGAATACTAGTTTTTCAAATGACTATTTGAATGTATTTGCTAAGAACTTTTAT
846 CGTATTCAATCTTGAATACTAGTTTTTCAAATGACTATTTGAATGTATTTGCTAAGAACTTTTAT
25986457 TACCATTCTTTTAAAAGTCATGAG
911 TACCATTCTTTTAAAAGTCATGAG
25986481 TGTTCAGTTTATATTAAATCAAATTTGAACAAGTTTTTACATTAAATATATATCAAAAATATTTT
1 TGTTCAGTTTATATTAAATCAAATTTGAACAAGTTTTTACATTAAATATATATCAAAAATATTTT
25986546 TATGTAAATTTAATTATAAAATATTAGTATAAAATAATTTTTAAATAATGATACAAACTCTAAAT
66 TATGTAAATTTAATTATAAAATATTAGTATAAAATAATTTTTAAATAATGATACAAACTCTAAAT
25986611 TGATTCAAAATTGAAGCCCAAAAAAGAAGAATCAAATCAGTATCATTAAACCCCATCTCCATCTC
131 TGATTCAAAATTGAAGCCCAAAAAAGAAGAATCAAATCAGTATCATTAAACCCCATCTCCATCTC
25986676 CATCCTTATCTTCCTATTATTTTAATTATAATCGATTCAGAGTTTATTCATTATTTAAAAATTAT
196 CATCCTTATCTTCCTATTATTTTAATTATAATCGATTCAGAGTTTATTCATTATTTAAAAATTAT
25986741 TTTATATTAATATTTTATATAATTTATAATTAAATTATCATAAATATATGTTTTATATATAATTA
261 TTTATATTAATATTTTATATAATTTATAATTAAATTATCATAAATATATGTTTTATATATAATTA
25986806 ATCTGATTTAAAATAAAAAAAATTGTTCAAATTTGATTTAATAGAGATAAAAAAATTGCTTAAAA
326 ATCTGATTTAAAATAAAAAAAATTGTTCAAATTTGATTTAATAGAGATAAAAAAATTGCTTAAAA
25986871 TTAAAAGATGTTATAAAACAAAGAGAGATGGAGAGAATAAAGAAGAAAGAAAATATGAAAGCAAC
391 TTAAAAGATGTTATAAAACAAAGAGAGATGGAGAGAATAAAGAAGAAAGAAAATATGAAAGCAAC
25986936 AGAGGCTGTATTTTATTGATCAAAATGGGTGACTACAATGATTCACCAGAGTTTCTATTTATAGA
456 AGAGGCTGTATTTTATTGATCAAAATGGGTGACTACAATGATTCACCAGAGTTTCTATTTATAGA
25987001 CATAAGAAGTATAAAAGAAGTAAGATCTAATTCTAATAACTATTAGAATTTAAAGTACATTAAAA
521 CATAAGAAGTATAAAAGAAGTAAGATCTAATTCTAATAACTATTAGAATTTAAAGTACATTAAAA
25987066 CTTTATCTTGATCATGATGGACATCCACTTAATAAGATATTCATAACACTCCCCATTGGATGTCC
586 CTTTATCTTGATCATGATGGACATCCACTTAATAAGATATTCATAACACTCCCCATTGGATGTCC
25987131 ATTGGTAGATAATGTACCTTGTTAAAACCTTATTAGGAAGAATCTTGTGGGATAAACTATAATAC
651 ATTGGTAGATAATGTACCTTGTTAAAACCTTATTAGGAAGAATCTTGTGGGATAAACTATAATAC
25987196 GTATAATATGCTGCCTCATTAAAAACCTTACCAGGAAAACCTAATGGGACAAAACCTCGATTAAG
716 GTATAATATGCTGCCTCATTAAAAACCTTACCAGGAAAACCTAATGGGACAAAACCTCGATTAAG
25987261 GGAAAAAGAGTGCAATGCGTATTTACTCTCCCTCATGAAAACATCACATATTTTCTCATATTCGA
781 GGAAAAAGAGTGCAATGCGTATTTACTCTCCCTCATGAAAACATCACATATTTTCTCATATTCGA
25987326 CGTATTCAATCTTGAATACTAGTTTTTCAAATGACTATTTGAATGTATTTGCTAAGAACTTTTAT
846 CGTATTCAATCTTGAATACTAGTTTTTCAAATGACTATTTGAATGTATTTGCTAAGAACTTTTAT
25987391 TACCATTCTTTTAAAAGTCATGAG
911 TACCATTCTTTTAAAAGTCATGAG
25987415 TG
1 TG
25987417 AGAGAAATTT
Statistics
Matches: 935, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
934 935 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (934 bp):
TGTTCAGTTTATATTAAATCAAATTTGAACAAGTTTTTACATTAAATATATATCAAAAATATTTT
TATGTAAATTTAATTATAAAATATTAGTATAAAATAATTTTTAAATAATGATACAAACTCTAAAT
TGATTCAAAATTGAAGCCCAAAAAAGAAGAATCAAATCAGTATCATTAAACCCCATCTCCATCTC
CATCCTTATCTTCCTATTATTTTAATTATAATCGATTCAGAGTTTATTCATTATTTAAAAATTAT
TTTATATTAATATTTTATATAATTTATAATTAAATTATCATAAATATATGTTTTATATATAATTA
ATCTGATTTAAAATAAAAAAAATTGTTCAAATTTGATTTAATAGAGATAAAAAAATTGCTTAAAA
TTAAAAGATGTTATAAAACAAAGAGAGATGGAGAGAATAAAGAAGAAAGAAAATATGAAAGCAAC
AGAGGCTGTATTTTATTGATCAAAATGGGTGACTACAATGATTCACCAGAGTTTCTATTTATAGA
CATAAGAAGTATAAAAGAAGTAAGATCTAATTCTAATAACTATTAGAATTTAAAGTACATTAAAA
CTTTATCTTGATCATGATGGACATCCACTTAATAAGATATTCATAACACTCCCCATTGGATGTCC
ATTGGTAGATAATGTACCTTGTTAAAACCTTATTAGGAAGAATCTTGTGGGATAAACTATAATAC
GTATAATATGCTGCCTCATTAAAAACCTTACCAGGAAAACCTAATGGGACAAAACCTCGATTAAG
GGAAAAAGAGTGCAATGCGTATTTACTCTCCCTCATGAAAACATCACATATTTTCTCATATTCGA
CGTATTCAATCTTGAATACTAGTTTTTCAAATGACTATTTGAATGTATTTGCTAAGAACTTTTAT
TACCATTCTTTTAAAAGTCATGAG
Found at i:25989578 original size:377 final size:377
Alignment explanation
Indices: 25988884--25989637 Score: 1203
Period size: 377 Copynumber: 2.0 Consensus size: 377
25988874 AATCAATAAA
25988884 GGATTGAGATATAAACTCACCAGTGTTAGCAAGATGAATCGTCTTAATTGCATGATCTGAAATTA
1 GGATTGAGATATAAACTCACCAGTGTTAGCAAGATGAATCGTCTTAATTGCATGATCTGAAATTA
* * *
25988949 ATTATTTAAACAAGTAATCTTGCAAATGACATATTTCAAGTTGATAAGCCATATGTGATTATTTT
66 ATTATTTAAACAAGTAATCTTGCAAATGACAGATTACAAGTTGATAAGCCATACGTGATTATTTT
* * * * *
25989014 GTTTACGCATCTACCAAAATCATATAATATCAAAACCATCCACATGGTGGATGAATGAGCCCATA
131 ATATACGAATCTACCAAAATCATATAATATCAAAACCATCCAAATGGTGGATGAATGAACCCATA
* * * *
25989079 TTCATTTCAAGAATGTAAGACATAAAATCTCAAGTTTAGCTAGTGAGTTTCTAATAATCAATTTT
196 TTCATTTCAAGAATGTAAGACATAAAATCTCAACTTTAACTAGTGAGTTTCTAACAATCAATGTT
* *
25989144 CATTGAGAACAAGTAACATATAAGAATTCTTTTAAATTAAAGAATCTTTTGGTTCTTTAATGAAT
261 CATTGAGAACAAGCAACAAATAAGAATTCTTTTAAATTAAAGAATCTTTTGGTTCTTTAATGAAT
25989209 GTCCATATGAATTCTTAATTAATTTTCGTGTCATATACGATCCAGGATGGTC
326 GTCCATATGAATTCTTAATTAATTTTCGTGTCATATACGATCCAGGATGGTC
25989261 GGATTGAGATATAAACTCACCAGTGTTAGCAAGATGAATCGTCTTAATTGCATGATCTGAAATTA
1 GGATTGAGATATAAACTCACCAGTGTTAGCAAGATGAATCGTCTTAATTGCATGATCTGAAATTA
** *
25989326 ATTATTTAAACAAGTAATCTTGCAAATGGTAGGTTACAAGTTGATAA-CACATACGTGATTATTT
66 ATTATTTAAACAAGTAATCTTGCAAATGACAGATTACAAGTTGATAAGC-CATACGTGATTATTT
* ** **
25989390 TATAGATA-TAATCTACCAAAATCATATAATATCAAAGTCATTGAAATGGTGGATGAATGAACCC
130 TAT--ATACGAATCTACCAAAATCATATAATATCAAAACCATCCAAATGGTGGATGAATGAACCC
*
25989454 ATATTCATTTC-AGAAGTGTAAGACATTAAATCTCAACTTTAACTAGTGAGTTTCTAACAATCAA
193 ATATTCATTTCAAGAA-TGTAAGACATAAAATCTCAACTTTAACTAGTGAGTTTCTAACAATCAA
* *
25989518 TGTTGATTGAGAACAAGCAACAAATGA-AATT-TCTTTAAATTAAAGAATCTTTTGGTTCTTTAA
257 TGTTCATTGAGAACAAGCAACAAATAAGAATTCT-TTTAAATTAAAGAATCTTTTGGTTCTTTAA
25989581 TGAATGTCCATATGAATTCTTAATTAATTTTCGTGTCATATACGATCCAGGATGGTC
321 TGAATGTCCATATGAATTCTTAATTAATTTTCGTGTCATATACGATCCAGGATGGTC
25989638 TAAATGGTCA
Statistics
Matches: 347, Mismatches: 25, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
376 2 0.01
377 218 0.63
378 125 0.36
379 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35
Consensus pattern (377 bp):
GGATTGAGATATAAACTCACCAGTGTTAGCAAGATGAATCGTCTTAATTGCATGATCTGAAATTA
ATTATTTAAACAAGTAATCTTGCAAATGACAGATTACAAGTTGATAAGCCATACGTGATTATTTT
ATATACGAATCTACCAAAATCATATAATATCAAAACCATCCAAATGGTGGATGAATGAACCCATA
TTCATTTCAAGAATGTAAGACATAAAATCTCAACTTTAACTAGTGAGTTTCTAACAATCAATGTT
CATTGAGAACAAGCAACAAATAAGAATTCTTTTAAATTAAAGAATCTTTTGGTTCTTTAATGAAT
GTCCATATGAATTCTTAATTAATTTTCGTGTCATATACGATCCAGGATGGTC
Found at i:25999069 original size:26 final size:26
Alignment explanation
Indices: 25999040--25999121 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 26
25999030 ATACCGCAGT
25999040 TCTTTGTGAGCTTCCT-ATTATATGGC
1 TCTTTGTGAGCTTCCTAATTA-ATGGC
* * * *
25999066 TCTTCGTGAACTTCCTGATTAAAGGC
1 TCTTTGTGAGCTTCCTAATTAATGGC
*
25999092 TCTTTCTGAGCTTCCTAATTAATGGC
1 TCTTTGTGAGCTTCCTAATTAATGGC
25999118 TCTT
1 TCTT
25999122 CGGAGTTTCC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 43 0.91
27 4 0.09
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (26 bp):
TCTTTGTGAGCTTCCTAATTAATGGC
Found at i:25999250 original size:24 final size:23
Alignment explanation
Indices: 25999046--25999250 Score: 74
Period size: 24 Copynumber: 8.3 Consensus size: 23
25999036 CAGTTCTTTG
25999046 TGAGCTTCCT-ATTATATGGCTCTT
1 TGAGCTTCCTGA-T-TATGGCTCTT
* *
25999070 CGTGAACTTCCTGATTAAAGGCTCTTT
1 --TGAGCTTCCTGATT-ATGGCTC-TT
*
25999097 CTGAGCTTCCTAATTAATGGCTCTT
1 -TGAGCTTCCTGATT-ATGGCTCTT
* * * * *
25999122 CGGAGTTTCCTGATAATGACTCGCT
1 -TGAGCTTCCTGATTATGGCTC-TT
* * * * *
25999147 TGAACTTCCTAATATATAGCTATCC
1 TGAGCTTCCTGAT-TATGGCTCT-T
* * *
25999172 AGACCTTCCCG-TTAATGGCTCTT
1 TGAGCTTCCTGATT-ATGGCTCTT
* *
25999195 TGGAGCTACCTG-TTATTGGCTCACT
1 T-GAGCTTCCTGATTA-TGGCTC-TT
25999220 TGAGCTTCCTGATTATGGCTCTT
1 TGAGCTTCCTGATTATGGCTCTT
25999243 ATGAGCTT
1 -TGAGCTT
25999251 TCCGTTATAT
Statistics
Matches: 131, Mismatches: 36, Indels: 26
0.68 0.19 0.13
Matches are distributed among these distances:
23 3 0.02
24 59 0.45
25 31 0.24
26 35 0.27
27 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (23 bp):
TGAGCTTCCTGATTATGGCTCTT
Found at i:26001611 original size:27 final size:27
Alignment explanation
Indices: 26001573--26001641 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
26001563 TGTAATCCTT
* * **
26001573 GTGTTTATTGTCCCAACGATCTACTTC
1 GTGTTTAATGTCCCAACGAACTACCCC
26001600 GTGTTTAATGTCCCAACGAACTACCCC
1 GTGTTTAATGTCCCAACGAACTACCCC
*
26001627 GTGTTTACTGTCCCA
1 GTGTTTAATGTCCCA
26001642 GTAGACTACC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (27 bp):
GTGTTTAATGTCCCAACGAACTACCCC
Found at i:26003489 original size:20 final size:21
Alignment explanation
Indices: 26003460--26003498 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
26003450 AAAGTGGGCA
26003460 AACAACCATTTTT-AACCTTG
1 AACAACCATTTTTCAACCTTG
*
26003480 AACAATCATTTTTCAACCT
1 AACAACCATTTTTCAACCT
26003499 ATTTAACTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.36, C:0.26, G:0.03, T:0.36
Consensus pattern (21 bp):
AACAACCATTTTTCAACCTTG
Found at i:26005242 original size:27 final size:27
Alignment explanation
Indices: 26005212--26005263 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
26005202 ATATTTAATT
26005212 ATTA-TAACATAATTAAATTGTACTTAA
1 ATTATTAACAT-ATTAAATTGTACTTAA
* *
26005239 ATTATTAACATATTGAATTTTACTT
1 ATTATTAACATATTAAATTGTACTT
26005264 CATTTTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (27 bp):
ATTATTAACATATTAAATTGTACTTAA
Found at i:26008491 original size:16 final size:17
Alignment explanation
Indices: 26008457--26008501 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
26008447 TAGTTTTCTT
*
26008457 TATATGTATACTTTCATA
1 TATATGTATA-TATCATA
26008475 TATATGTATATAT-ATA
1 TATATGTATATATCATA
26008491 TATATGTATAT
1 TATATGTATAT
26008502 TATTGATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 14 0.54
17 2 0.08
18 10 0.38
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (17 bp):
TATATGTATATATCATA
Found at i:26009282 original size:11 final size:11
Alignment explanation
Indices: 26009266--26009290 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26009256 TAAACAATCG
26009266 ATTCGGTACCA
1 ATTCGGTACCA
26009277 ATTCGGTACCA
1 ATTCGGTACCA
26009288 ATT
1 ATT
26009291 TTCTCAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (11 bp):
ATTCGGTACCA
Found at i:26030292 original size:42 final size:43
Alignment explanation
Indices: 26030227--26030317 Score: 114
Period size: 42 Copynumber: 2.1 Consensus size: 43
26030217 ACGGCTTGAC
*
26030227 ACACGGGTATGTGACACGACCGTGTGACCCTACTTAG-AGAGTT
1 ACACGGGTATGGGACACGACCGTGTGACCCTACTTAGAAG-GTT
* * * *
26030270 ACACGGGT-TGGGACACGGCCGTGTGTCCCTAGTTCGAAGGTT
1 ACACGGGTATGGGACACGACCGTGTGACCCTACTTAGAAGGTT
26030312 ACACGG
1 ACACGG
26030318 CCTGAGACAC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 32 0.76
43 10 0.24
ACGTcount: A:0.22, C:0.24, G:0.32, T:0.22
Consensus pattern (43 bp):
ACACGGGTATGGGACACGACCGTGTGACCCTACTTAGAAGGTT
Found at i:26030327 original size:42 final size:42
Alignment explanation
Indices: 26030239--26030338 Score: 105
Period size: 42 Copynumber: 2.4 Consensus size: 42
26030229 ACGGGTATGT
* * ** *
26030239 GACACGACCGTGTGACCCTACTTAGAGAGTTACACGGGTTGG
1 GACACGGCCGTGTGTCCCTACTTAGAGAGTTACACGGCCTGA
* *
26030281 GACACGGCCGTGTGTCCCTAGTTCGA-AGGTTACACGGCCTGA
1 GACACGGCCGTGTGTCCCTACTTAGAGA-GTTACACGGCCTGA
26030323 GACACAGG-CGTGTGTC
1 GACAC-GGCCGTGTGTC
26030339 TCAGCCGTGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 46 0.94
43 2 0.04
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (42 bp):
GACACGGCCGTGTGTCCCTACTTAGAGAGTTACACGGCCTGA
Found at i:26033254 original size:17 final size:18
Alignment explanation
Indices: 26033215--26033248 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26033205 TATTAACACT
*
26033215 TAAAATAATATTATATAG
1 TAAAATAATAGTATATAG
26033233 TAAAATAAT-GTATATA
1 TAAAATAATAGTATATA
26033249 CGAAAAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
TAAAATAATAGTATATAG
Found at i:26034849 original size:50 final size:50
Alignment explanation
Indices: 26034785--26035392 Score: 320
Period size: 50 Copynumber: 12.1 Consensus size: 50
26034775 TCGTAACTTC
* * * * *
26034785 AATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTT
1 AATCTGTTCAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTGGCTTT
* * * * * *
26034835 AATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTT
1 AATCTGTTCAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTGGCTTT
* * * * * *
26034885 AATCTTTTTAACTGCAATGTCAGGGAGGCCAGACTCACTGTTATGGCTTT
1 AATCTGTTCAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTGGCTTT
* * ** * * * * * *
26034935 CATCTGTTCCACTGCACCGCCTGGGAGGTAAGATTCGCTGTTGTAGCTTT
1 AATCTGTTCAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTGGCTTT
* * * * *
26034985 AATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTT
1 AATCTGTTCAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTGGCTTT
* * * * *
26035035 AATCTGTTCCACTGC-ATCG-CTTGGGAAGTAAGATTCGCTGTTGTAGCTTT
1 AATCTGTTCAACTGCAAT-GTC-AGGGAAGCAAGATTCACTGTTGTGGCTTT
* * * *
26035085 AATCTTTTTAACTGCAATGTCAGGGAGGCCAA-ATTCACCGTTGTGGCTTT
1 AATCTGTTCAACTGCAATGTCAGGGAAG-CAAGATTCACTGTTGTGGCTTT
* * * * * * ** * ** *
26035135 AATCTGCTCTACTGCACTGGCTGAGAGAGTGAGATTC-GTCACTGTGACTTT
1 AATCTGTTCAACTGCAATGTCAGGGA-AGCAAGATTCACT-GTTGTGGCTTT
* *** * *
26035186 AATCCT-TTTAACTGCAATGTCAAAAAAGCAAGATTTACCGTTGTGGCTTT
1 AAT-CTGTTCAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTGGCTTT
* * * * * * ** *
26035236 AATCTGCTCTACTGCACTGGCTGAGAGAGTGAGATT---TGTCACTGTGACTTT
1 AATCTGTTCAACTGCAATGTCAGGGA-AGCAAGATTCACTGT---TGTGGCTTT
* * *
26035287 AATCCT-TTTAACTGGAATGTC-GGGAAAGCAAGATTCACAGTTGTGGCTTT
1 AAT-CTGTTCAACTGCAATGTCAGGG-AAGCAAGATTCACTGTTGTGGCTTT
* * * * * * *
26035337 AATCTATTTC-ACTGCATTGCCATGGAGGTAAGATTCACTGTTGTAGCTTT
1 AATCT-GTTCAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTGGCTTT
26035387 AATCTG
1 AATCTG
26035393 CAATGTCGAG
Statistics
Matches: 401, Mismatches: 134, Indels: 47
0.69 0.23 0.08
Matches are distributed among these distances:
48 2 0.00
49 7 0.02
50 321 0.80
51 65 0.16
52 4 0.01
53 2 0.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (50 bp):
AATCTGTTCAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTGGCTTT
Found at i:26034966 original size:100 final size:100
Alignment explanation
Indices: 26034785--26035442 Score: 690
Period size: 100 Copynumber: 6.7 Consensus size: 100
26034775 TCGTAACTTC
* *
26034785 AATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGC
1 AATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC
* *
26034850 ACTGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTT
66 ACTGCCTGGGAGGTAAGATTCGCTGTTGTAGCTTT
* * * * * *
26034885 AATCTTTTTAACTGCAATGTCAGGGAGGCCAGACTCACTGTTATGGCTTTCATCTGTTCCACTGC
1 AATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC
*
26034950 ACCGCCTGGGAGGTAAGATTCGCTGTTGTAGCTTT
66 ACTGCCTGGGAGGTAAGATTCGCTGTTGTAGCTTT
* *
26034985 AATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGC
1 AATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC
* *
26035050 A-TCGCTTGGGAAGTAAGATTCGCTGTTGTAGCTTT
66 ACT-GCCTGGGAGGTAAGATTCGCTGTTGTAGCTTT
* * *
26035085 AATCTTTTTAACTGCAATGTCAGGGAGGCCAA-ATTCACCGTTGTGGCTTTAATCTGCTCTACTG
1 AATCTTTTTAACTGCAATGTCAGGGAAG-CAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTG
* * *
26035149 CACTGGCTGAGAGAGTGAGATTCGTCACTG-TG-A-CTTT
65 CACTGCCTGGGAG-GTAAGATTCG---CTGTTGTAGCTTT
* *** * * *
26035186 AATCCTTTTAACTGCAATGTCAAAAAAGCAAGATTTACCGTTGTGGCTTTAATCTGCTCTACTGC
1 AATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC
* * * *
26035251 ACTGGCTGAGAGAGTGAGATTTGTCACTG-TG-A-CTTT
66 ACTGCCTGGGAG-GTAAGA--T-TCGCTGTTGTAGCTTT
* * * * *
26035287 AATCCTTTTAACTGGAATGTC-GGGAAAGCAAGATTCACAGTTGTGGCTTTAATCTATTTCACTG
1 AATCTTTTTAACTGCAATGTCAGGG-AAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTG
* *
26035351 CATTGCCAT-GGAGGTAAGATTCACTGTTGTAGCTTT
65 CACTGCC-TGGGAGGTAAGATTCGCTGTTGTAGCTTT
* *
26035387 AA------T--CTGCAATGTC-GAGGAAGCAAGATTTACCGTTGTAGCTTTAATCTGTTCC-CTG
1 AATCTTTTTAACTGCAATGTCAG-GGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTG
26035442 C
65 C
26035443 TCTTGAAGAT
Statistics
Matches: 482, Mismatches: 59, Indels: 43
0.83 0.10 0.07
Matches are distributed among these distances:
91 4 0.01
92 40 0.08
93 2 0.00
94 1 0.00
97 6 0.01
98 3 0.01
99 1 0.00
100 253 0.52
101 162 0.34
102 2 0.00
103 3 0.01
104 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
AATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC
ACTGCCTGGGAGGTAAGATTCGCTGTTGTAGCTTT
Found at i:26036697 original size:7 final size:7
Alignment explanation
Indices: 26036680--26036748 Score: 58
Period size: 7 Copynumber: 10.1 Consensus size: 7
26036670 TTAGCCTCTC
26036680 CATTTTT
1 CATTTTT
26036687 -ATTTTT
1 CATTTTT
26036693 CA-TTTT
1 CATTTTT
26036699 CATTTTT
1 CATTTTT
*
26036706 C-CTTTT
1 CATTTTT
26036712 CATTTTT
1 CATTTTT
*
26036719 --GTTTT
1 CATTTTT
26036724 CACTTTTTT
1 CA--TTTTT
26036733 CATTTTT
1 CATTTTT
26036740 CATATTTT
1 CAT-TTTT
26036748 C
1 C
26036749 TGACTCAGAG
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
5 4 0.08
6 17 0.34
7 18 0.36
8 5 0.10
9 6 0.12
ACGTcount: A:0.13, C:0.16, G:0.01, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:26036698 original size:13 final size:13
Alignment explanation
Indices: 26036680--26036748 Score: 68
Period size: 13 Copynumber: 5.1 Consensus size: 13
26036670 TTAGCCTCTC
*
26036680 CATTTTTATTTTT
1 CATTTTCATTTTT
26036693 CATTTTCATTTTT
1 CATTTTCATTTTT
*
26036706 CCTTTTCATTTTT
1 CATTTTCATTTTT
*
26036719 -GTTTTCACTTTTTT
1 CATTTTCA--TTTTT
26036733 CATTTTTCATATTTT
1 CA-TTTTCAT-TTTT
26036748 C
1 C
26036749 TGACTCAGAG
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
12 6 0.13
13 24 0.51
14 6 0.13
15 5 0.11
16 6 0.13
ACGTcount: A:0.13, C:0.16, G:0.01, T:0.70
Consensus pattern (13 bp):
CATTTTCATTTTT
Found at i:26036704 original size:19 final size:19
Alignment explanation
Indices: 26036680--26036717 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26036670 TTAGCCTCTC
*
26036680 CATTTTTATTTTTCATTTT
1 CATTTTTACTTTTCATTTT
*
26036699 CATTTTTCCTTTTCATTTT
1 CATTTTTACTTTTCATTTT
26036718 TGTTTTCACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (19 bp):
CATTTTTACTTTTCATTTT
Found at i:26036729 original size:19 final size:18
Alignment explanation
Indices: 26036689--26036730 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
26036679 CCATTTTTAT
26036689 TTTTCATTTTCATTTTTCC
1 TTTTCATTTT-ATTTTTCC
26036708 TTTTCATTTT-TGTTTTCAC
1 TTTTCATTTTAT-TTTTC-C
26036727 TTTT
1 TTTT
26036731 TTCATTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 1 0.05
18 5 0.24
19 15 0.71
ACGTcount: A:0.10, C:0.17, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTCATTTTATTTTTCC
Found at i:26042314 original size:14 final size:15
Alignment explanation
Indices: 26042283--26042319 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
26042273 GAGAACTTGA
26042283 TATAAATAATAGTATG
1 TATAAA-AATAGTATG
26042299 TATAAAAATA-TATG
1 TATAAAAATAGTATG
26042313 TATAAAA
1 TATAAAA
26042320 GTTGAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.52
15 4 0.19
16 6 0.29
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (15 bp):
TATAAAAATAGTATG
Found at i:26060557 original size:8 final size:9
Alignment explanation
Indices: 26060533--26060558 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26060523 GAAAACTATA
26060533 GTGTTTTTG
1 GTGTTTTTG
26060542 GTGTTTTTG
1 GTGTTTTTG
26060551 GTGTTTTT
1 GTGTTTTT
26060559 TCTTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (9 bp):
GTGTTTTTG
Found at i:26066747 original size:18 final size:20
Alignment explanation
Indices: 26066724--26066767 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
26066714 AATTAGATTT
*
26066724 TAAAAAT-TCA-ATTAAAAA
1 TAAAAATATCATAATAAAAA
*
26066742 TAAAAATATTATAATAAAAA
1 TAAAAATATCATAATAAAAA
26066762 TAAAAA
1 TAAAAA
26066768 AATGGCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 2 0.09
20 13 0.59
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAAAATATCATAATAAAAA
Found at i:26072968 original size:25 final size:25
Alignment explanation
Indices: 26072940--26073031 Score: 114
Period size: 25 Copynumber: 3.7 Consensus size: 25
26072930 TCTGACCCAC
26072940 AGCTCGTGTGAGCATACCGATTTAT
1 AGCTCGTGTGAGCATACCGATTTAT
* * *
26072965 AGCTCGTGAT-AGCATACCAATCTAC
1 AGCTCGTG-TGAGCATACCGATTTAT
* *
26072990 AGCTCGAGTGAGCATACCGATTCAT
1 AGCTCGTGTGAGCATACCGATTTAT
*
26073015 AGCTCGTATGAGCATAC
1 AGCTCGTGTGAGCATAC
26073032 ATGTACATGA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.02
25 53 0.96
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACCGATTTAT
Found at i:26074346 original size:477 final size:478
Alignment explanation
Indices: 26073444--26074398 Score: 1770
Period size: 477 Copynumber: 2.0 Consensus size: 478
26073434 ATGCTTACTC
26073444 TATGTTATTTTTTTGTGTGTTTTATAGTGAATCGGAAGCTTGTTCGGGTTGGAAGCTTGTCAGAG
1 TATGTTATTTTTTTGTGTGTTTTATAGTGAATCGGAAGCTTGTTCGGGTTGGAAGCTTGTCAGAG
26073509 CTATATCACACTATCCATCGACTCTTTTGGCACATTCGGTTGTTTAATTTTGGTTATAATGGCAT
66 CTATATCACACTATCCATCGACTCTTTTGGCACATTCGGTTGTTTAATTTTGGTTATAATGGCAT
26073574 GTATAGGTATTTTGGCTAATGTTGGCCTATATGTTTTGTTGTAAATATGGTCATTTGATTTGGCT
131 GTATAGGTATTTTGGCTAATGTTGGCCTATATGTTTTGTTGTAAATATGGTCATTTGATTTGGCT
26073639 TGTGTTTGACATATTTTTGGTATGTATATAAGTAGCATTAACATGGTTGATGTGTGGTTTATTTT
196 TGTGTTTGACATATTTTTGGTATGTATATAAGTAGCATTAACATGGTTGATGTGTGGTTTATTTT
*
26073704 GTGTTGAACAATGAAAGGTAAAATGATAGTTAAATGTGTTTTGTGATATGACTTATATGGTGATT
261 GTGTTGAACAATGAAAGGTAAAATGATAGTTAAATGTGTTTTGTGATATGACTTATATAGTGATT
* * * *
26073769 TGGTGCTAGTTTAGAATGGCATATTTGGTACCAATTGAGAAGTTTTGGTAAGTAACTAAGTAACA
326 TGGGGCTAGTTTAGAATGGCATACTTGGTACCAATTGAGAAGTTTTGATAAGTAACTAAATAACA
*
26073834 TGAATTGATGCAAATCTAGTTGAAAGTTAGTTGATCATTTTGACCAATATGAGTACATGATTATA
391 TGAATTGATGCAAATCTAGTTCAAAGTTAGTTGATCATTTTGACCAATATGAGTACATGATTATA
* *
26073899 TATGTTTGCATATTTTCATTTGA
456 CATGTTTGCATATTGTCATTTGA
26073922 TATGTTA-TTTTTTGTGTGTTTTATAGTGAATCGGAAGCTTGTTCGGGTTGGAAGCTTGTCAGAG
1 TATGTTATTTTTTTGTGTGTTTTATAGTGAATCGGAAGCTTGTTCGGGTTGGAAGCTTGTCAGAG
26073986 CTATATCACACTATCCATCGACTCTTTTGGCACATTCGGTTGTTTAATTTTGGTTATAATGGCAT
66 CTATATCACACTATCCATCGACTCTTTTGGCACATTCGGTTGTTTAATTTTGGTTATAATGGCAT
26074051 GTATAGGTATTTTGGCTAATGTTGGCCTATATGTTTTGTTGTAAATATGGTCATTTGATTTGGCT
131 GTATAGGTATTTTGGCTAATGTTGGCCTATATGTTTTGTTGTAAATATGGTCATTTGATTTGGCT
26074116 TGTGTTTGACATATTTTTGGTATGTATATAAGTAGCATTAACATGGTTGATGTGTGGTTTATTTT
196 TGTGTTTGACATATTTTTGGTATGTATATAAGTAGCATTAACATGGTTGATGTGTGGTTTATTTT
26074181 GTGTTGAACAATGAAAGGTAAAATGATAGTTAAATGTGTTTTGTGATATGACTTATATAGTGATT
261 GTGTTGAACAATGAAAGGTAAAATGATAGTTAAATGTGTTTTGTGATATGACTTATATAGTGATT
* **
26074246 TGGGGCTAGTTTA-ATATGTCATACTTGGTACCAATTGAGAAGTTTTGATAAGTAACTAAATGGC
326 TGGGGCTAGTTTAGA-ATGGCATACTTGGTACCAATTGAGAAGTTTTGATAAGTAACTAAATAAC
* *
26074310 ATGAATTTATGCAAATCTAGTTCAAAGTTAGTTGATCATTTTGATCAATATGAGTACATGATTAT
390 ATGAATTGATGCAAATCTAGTTCAAAGTTAGTTGATCATTTTGACCAATATGAGTACATGATTAT
26074375 ACATGTTTGCATATTGTCATTTGA
455 ACATGTTTGCATATTGTCATTTGA
26074399 GGTGCCTAAG
Statistics
Matches: 463, Mismatches: 13, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
476 1 0.00
477 455 0.98
478 7 0.02
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.42
Consensus pattern (478 bp):
TATGTTATTTTTTTGTGTGTTTTATAGTGAATCGGAAGCTTGTTCGGGTTGGAAGCTTGTCAGAG
CTATATCACACTATCCATCGACTCTTTTGGCACATTCGGTTGTTTAATTTTGGTTATAATGGCAT
GTATAGGTATTTTGGCTAATGTTGGCCTATATGTTTTGTTGTAAATATGGTCATTTGATTTGGCT
TGTGTTTGACATATTTTTGGTATGTATATAAGTAGCATTAACATGGTTGATGTGTGGTTTATTTT
GTGTTGAACAATGAAAGGTAAAATGATAGTTAAATGTGTTTTGTGATATGACTTATATAGTGATT
TGGGGCTAGTTTAGAATGGCATACTTGGTACCAATTGAGAAGTTTTGATAAGTAACTAAATAACA
TGAATTGATGCAAATCTAGTTCAAAGTTAGTTGATCATTTTGACCAATATGAGTACATGATTATA
CATGTTTGCATATTGTCATTTGA
Found at i:26076183 original size:20 final size:18
Alignment explanation
Indices: 26076133--26076184 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
26076123 TTACAAGATA
26076133 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
26076150 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
26076170 AATATTAAATTAATA
1 AATATTAAATTAATA
26076185 AAATACTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 3 0.10
20 15 0.50
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:26076674 original size:19 final size:19
Alignment explanation
Indices: 26076636--26076675 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26076626 AAAATATCAT
* *
26076636 ATTAATTTTAATTAATTTG
1 ATTAATTTAAATTAACTTG
*
26076655 ATTAATTTAAATTTACTTG
1 ATTAATTTAAATTAACTTG
26076674 AT
1 AT
26076676 CAAAATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTAATTTAAATTAACTTG
Found at i:26078087 original size:16 final size:17
Alignment explanation
Indices: 26078050--26078095 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
26078040 ATTAAATTTG
*
26078050 ATTTAATATTTATCTTA
1 ATTTAATATTTATATTA
26078067 A--TAATATTT-TATTA
1 ATTTAATATTTATATTA
*
26078081 ATTTAATATTAATAT
1 ATTTAATATTTATAT
26078096 GAGTAGTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.21
15 8 0.33
16 7 0.29
17 4 0.17
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTAATATTTATATTA
Found at i:26080099 original size:28 final size:28
Alignment explanation
Indices: 26080068--26080135 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
26080058 AGTGAGGGCC
*
26080068 TAGCCCGATACAATAATAGTGTGAACCT
1 TAGCCCAATACAATAATAGTGTGAACCT
**
26080096 TAGCCCAATACAATAATAGTGTGGGCCT
1 TAGCCCAATACAATAATAGTGTGAACCT
26080124 TAGCCCAATACA
1 TAGCCCAATACA
26080136 GTAACAGTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (28 bp):
TAGCCCAATACAATAATAGTGTGAACCT
Found at i:26080275 original size:26 final size:26
Alignment explanation
Indices: 26080246--26080300 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
26080236 AACACACCAA
* *
26080246 TATCGCAGTAAAGCTGCCAGTAATAG
1 TATCGCAGTAAAGCTGCCAATAACAG
*
26080272 TATCGCAGTGAAGCTGCCAATAACAG
1 TATCGCAGTAAAGCTGCCAATAACAG
26080298 TAT
1 TAT
26080301 ATGTGGCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
TATCGCAGTAAAGCTGCCAATAACAG
Found at i:26080502 original size:53 final size:53
Alignment explanation
Indices: 26080444--26080579 Score: 184
Period size: 54 Copynumber: 2.5 Consensus size: 53
26080434 TAACAGTTAT
*
26080444 TTTACCTTATGGGGGTATTTCGGTCATTTTACCCTA-TGGGGTATTTCGGTCA
1 TTTACCTTATGGGGGTATTTCGGTCATTTTACCCTATTAGGGTATTTCGGTCA
* * * *
26080496 TCTTACCCTATGGGGATATTTCAGTCATTTTACCCTATTAGGGTATTTTGGTCA
1 T-TTACCTTATGGGGGTATTTCGGTCATTTTACCCTATTAGGGTATTTCGGTCA
* *
26080550 TTCTACCTTATGGCGGTATTTCGATCATTT
1 TT-TACCTTATGGGGGTATTTCGGTCATTT
26080580 ATTGATCGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
52 1 0.01
53 33 0.46
54 37 0.52
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (53 bp):
TTTACCTTATGGGGGTATTTCGGTCATTTTACCCTATTAGGGTATTTCGGTCA
Found at i:26080542 original size:27 final size:26
Alignment explanation
Indices: 26080437--26080579 Score: 144
Period size: 27 Copynumber: 5.3 Consensus size: 26
26080427 TGAGGTATAA
* *
26080437 CAGTTATTTTACCTTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
*
26080464 CGGTCATTTTACCCTATGGGGTATTT
1 CAGTCATTTTACCCTATGGGGTATTT
* *
26080490 CGGTCATCTTACCCTATGGGGATATTT
1 CAGTCATTTTACCCTATGGGG-TATTT
*
26080517 CAGTCATTTTACCCTATTAGGGTATTT
1 CAGTCATTTTACCCTA-TGGGGTATTT
** * *
26080544 TGGTCATTCTACCTTATGGCGGTATTT
1 CAGTCATTTTACCCTATGG-GGTATTT
26080571 C-GATCATTT
1 CAG-TCATTT
26080580 ATTGATCGCT
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
26 32 0.33
27 62 0.63
28 4 0.04
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (26 bp):
CAGTCATTTTACCCTATGGGGTATTT
Found at i:26083236 original size:69 final size:69
Alignment explanation
Indices: 26083080--26083237 Score: 262
Period size: 69 Copynumber: 2.3 Consensus size: 69
26083070 TCCATACCTG
* *
26083080 AGCTATGGTCTTATACCCTACAATCCTCGTGTTTACTATCCTGGAAGACTCTTTTGGTTGCCATA
1 AGCTATGGTCTTATACCTTACAATCCTAGTGTTTACTATCCTGGAAGACTCTTTTGGTTGCCATA
26083145 ACCA
66 ACCA
* *
26083149 AGCTATGGTCTTAAACCTTACAATCCTAGTGTTTACTGTCCTGGAAGACTCTTTTGGTTGCCATA
1 AGCTATGGTCTTATACCTTACAATCCTAGTGTTTACTATCCTGGAAGACTCTTTTGGTTGCCATA
*
26083214 ATCA
66 ACCA
*
26083218 GGCTATGGTCTTATACCTTA
1 AGCTATGGTCTTATACCTTA
26083238 TACCTCTTTG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 82 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (69 bp):
AGCTATGGTCTTATACCTTACAATCCTAGTGTTTACTATCCTGGAAGACTCTTTTGGTTGCCATA
ACCA
Found at i:26085269 original size:44 final size:45
Alignment explanation
Indices: 26085215--26085332 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 45
26085205 TACTAGCAGT
* *
26085215 TTAA-TTGCAAAAACTGGTGGTTTATCCA-AACTTACTGGCAAC-TT
1 TTAACTTGC-AAAACTGGTGGTTTATCCACAAC-TACTGACAACGTA
* * * * *
26085259 TTATC-TGC-AAACTTGTTGTGTATGCACAACTACTGACAACGTA
1 TTAACTTGCAAAACTGGTGGTTTATCCACAACTACTGACAACGTA
26085302 TTAACTTGCAAAACTGGTGGTTTATCCACAA
1 TTAACTTGCAAAACTGGTGGTTTATCCACAA
26085333 ACTTATTGCT
Statistics
Matches: 57, Mismatches: 12, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
42 23 0.40
43 8 0.14
44 9 0.16
45 17 0.30
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Consensus pattern (45 bp):
TTAACTTGCAAAACTGGTGGTTTATCCACAACTACTGACAACGTA
Found at i:26085376 original size:89 final size:90
Alignment explanation
Indices: 26085224--26085604 Score: 290
Period size: 90 Copynumber: 4.3 Consensus size: 90
26085214 TTTAATTGCA
* * * ** *
26085224 AAAACTGGTGGTTTAT-C--CAAACTTACTGGC-AACTTTTATCTGCAAACTTGTTGTGTATGCA
1 AAAACTGGTGGTTCATCCATCAAACTTACT-GCTAGCTTTTATCTACAAACCCGTTGTGTATTCA
* * *
26085285 CAACTACTGACAACGTATTAACTTGC
65 CAACTAATGACAATGTATTAACCTGC
* * *
26085311 AAAACTGGTGGTTTATCCA-CAAACTTATTGCTAGTTTTTATCTACAAACCCGTTGTGTATTCAC
1 AAAACTGGTGGTTCATCCATCAAACTTACTGCTAGCTTTTATCTACAAACCCGTTGTGTATTCAC
* * * *
26085375 AACTATTAATAGTGTATTAACCTGC
66 AACTAATGACAATGTATTAACCTGC
* * * * *** * * * * *
26085400 AACATTAGTGGTTCATCCATGATTTTTACTGGTAGTTTTTATCTACAAACTCATTTTGTATTCAC
1 AAAACTGGTGGTTCATCCATCAAACTTACTGCTAGCTTTTATCTACAAACCCGTTGTGTATTCAC
* *
26085465 AACTAATGGCAATGTATTAACCTAC
66 AACTAATGACAATGTATTAACCTGC
* * * *** * *
26085490 AATACCGGTGGTTCATCCATGATTTTTACTGGTAGCTTTTATCTACAAACCCGTTGTGTACTCAC
1 AAAACTGGTGGTTCATCCATCAAACTTACTGCTAGCTTTTATCTACAAACCCGTTGTGTATTCAC
* ** *
26085555 AACTAGTGGTAGTGTATTAACCTG-
66 AACTAATGACAATGTATTAACCTGC
* * *
26085579 AAATATTGTTAGTTCATCCA-CAAACT
1 AAA-ACTGGTGGTTCATCCATCAAACT
26085605 AAAGTTTCCG
Statistics
Matches: 235, Mismatches: 54, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
87 16 0.07
88 3 0.01
89 73 0.31
90 143 0.61
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (90 bp):
AAAACTGGTGGTTCATCCATCAAACTTACTGCTAGCTTTTATCTACAAACCCGTTGTGTATTCAC
AACTAATGACAATGTATTAACCTGC
Found at i:26085468 original size:90 final size:90
Alignment explanation
Indices: 26085342--26085578 Score: 330
Period size: 90 Copynumber: 2.6 Consensus size: 90
26085332 AACTTATTGC
* ** **
26085342 TAGTTTTTATCTACAAACCCGTTGTGTATTCACAACTATTAATAGTGTATTAACCTGCAACATTA
1 TAGTTTTTATCTACAAACCCGTTGTGTATTCACAACTAATGGTAGTGTATTAACCTGCAACACCA
26085407 GTGGTTCATCCATGATTTTTACTGG
66 GTGGTTCATCCATGATTTTTACTGG
* * * * * * * *
26085432 TAGTTTTTATCTACAAACTCATTTTGTATTCACAACTAATGGCAATGTATTAACCTACAATACCG
1 TAGTTTTTATCTACAAACCCGTTGTGTATTCACAACTAATGGTAGTGTATTAACCTGCAACACCA
26085497 GTGGTTCATCCATGATTTTTACTGG
66 GTGGTTCATCCATGATTTTTACTGG
* * *
26085522 TAGCTTTTATCTACAAACCCGTTGTGTACTCACAACTAGTGGTAGTGTATTAACCTG
1 TAGTTTTTATCTACAAACCCGTTGTGTATTCACAACTAATGGTAGTGTATTAACCTG
26085579 AAATATTGTT
Statistics
Matches: 125, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 125 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (90 bp):
TAGTTTTTATCTACAAACCCGTTGTGTATTCACAACTAATGGTAGTGTATTAACCTGCAACACCA
GTGGTTCATCCATGATTTTTACTGG
Found at i:26091548 original size:39 final size:39
Alignment explanation
Indices: 26091451--26091837 Score: 381
Period size: 39 Copynumber: 9.9 Consensus size: 39
26091441 TAGAAATACG
* * *
26091451 GTGATTATACAGGCTATGCGCCTAGCAGGCTTTGTGCC-
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
* * *
26091489 GATG-TTATTCGGGTTAAGTGCCTAGTAGGCTTTGTGCCA
1 G-TGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
* * * *
26091528 GTGAATATTCAGGTTAAGTGCCTAGCCGTG-TTTGTGTCA
1 GTGATTATTCAGGCTAAGTGCCTAGCAG-GCTTTGTGCCA
* *
26091567 GTGACTATTCAGGCTAAGTGCCTAGCAGGCATTGTGCC-
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
* * *
26091605 GTTGATTATTCAGGCTATGTGCCTAGCAGGCTTTGTGTCG
1 G-TGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
* * * **
26091645 GTGATTATTCGGGCTAAGTGCCCAACAGGCTTTGTG-TT
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
* *
26091683 GCTGATTATTCAGGCTCAGTGCCTAGCAGGCTTTGTGTCA
1 G-TGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
* * * *
26091723 ATGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGTCG
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
** * * *
26091762 GTGATTATTTGGGCTATGTGCCTAGCAGGCTTTAT-ACA
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
** *
26091800 GGTGATTATTCAGGCTTTGTGCCTAGTAGGCTTTGTGC
1 -GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGC
26091838 TGGTGTATTG
Statistics
Matches: 290, Mismatches: 48, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
38 35 0.12
39 253 0.87
40 2 0.01
ACGTcount: A:0.18, C:0.19, G:0.29, T:0.34
Consensus pattern (39 bp):
GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCA
Found at i:26091665 original size:117 final size:116
Alignment explanation
Indices: 26091451--26091837 Score: 454
Period size: 117 Copynumber: 3.3 Consensus size: 116
26091441 TAGAAATACG
* * * * *
26091451 GTGATTATACAGGCTATGCGCCTAGCAGGCTTTGTGCCGATG-TTATTCGGGTTAAGTGCCTAGT
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCGATGATTATTCGGGCTAAGTGCCTAGC
* * * * * *
26091515 AGGCTTTGTGCCAGTGAATATTCAGGTTAAGTGCCTAGCCGTG-TTTGTGTCA
66 AGGCTTTGTGTCGGTGATTATTCGGGCTAAGTGCCTAGCAG-GCTTTGTGT-A
* * * * *
26091567 GTGACTATTCAGGCTAAGTGCCTAGCAGGCATTGTGCCGTTGATTATTCAGGCTATGTGCCTAGC
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCGATGATTATTCGGGCTAAGTGCCTAGC
* * *
26091632 AGGCTTTGTGTCGGTGATTATTCGGGCTAAGTGCCCAACAGGCTTTGTGTT
66 AGGCTTTGTGTCGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGTA
* * *
26091683 GCTGATTATTCAGGCTCAGTGCCTAGCAGGCTTTGTGTCAATGATTATTCGGGCTAAGTGCCTAG
1 G-TGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCGATGATTATTCGGGCTAAGTGCCTAG
* * * **
26091748 CAGGCTTTGTGTCGGTGATTATTTGGGCTATGTGCCTAGCAGGCTTTATACA
65 CAGGCTTTGTGTCGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGTA
** *
26091800 GGTGATTATTCAGGCTTTGTGCCTAGTAGGCTTTGTGC
1 -GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGC
26091838 TGGTGTATTG
Statistics
Matches: 228, Mismatches: 39, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
116 38 0.17
117 189 0.83
118 1 0.00
ACGTcount: A:0.18, C:0.19, G:0.29, T:0.34
Consensus pattern (116 bp):
GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCGATGATTATTCGGGCTAAGTGCCTAGC
AGGCTTTGTGTCGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGTA
Found at i:26098464 original size:17 final size:17
Alignment explanation
Indices: 26098444--26098493 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
26098434 GTTTAGTATT
26098444 TTTGGATAAATTATTGA
1 TTTGGATAAATTATTGA
*
26098461 TTTGAGA-AAATTAGTTAA
1 TTTG-GATAAATTA-TTGA
26098479 TTT-GATAAATT-TTGA
1 TTTGGATAAATTATTGA
26098494 GTTAAGGGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 3 0.11
16 2 0.07
17 15 0.54
18 8 0.29
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (17 bp):
TTTGGATAAATTATTGA
Found at i:26098853 original size:39 final size:40
Alignment explanation
Indices: 26098808--26099234 Score: 513
Period size: 39 Copynumber: 11.0 Consensus size: 40
26098798 ATAGAAATAC
*
26098808 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGTC-
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
* * * *
26098847 GATGATTATTCGGGATATGTGCCTAGTAGGCTTTGTG-CT
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
* *
26098886 GGTGATTATTTGGGCTAAGTGCCTAGTAGGCTTTGTG-CT
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
26098925 GGTGATTATTCGGGCTATA-TGCCTAGCAGGCTTTGTG-CT
1 GGTGATTATTCGGGCTA-AGTGCCTAGCAGGCTTTGTGCCT
*
26098964 GGTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCC-
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
* *
26099003 GCTGATTATTCGGGCTTAGTGCCTAGCAGGCTTTGTGCC-
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
26099042 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCC-
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
* * * *
26099081 GGAT-ATTATTTGAGCTATGTACCTAGCAGGCTTTGTGCC-
1 GG-TGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
* * *
26099120 GGTGATTATTCGGGCTATGTGCCTAGTAGGCTTTGT--CA
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
** * **
26099158 GGTGATTATTCGGGCTTTGTTCCTAAAAGG-TTTGTGCC-
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
** *
26099196 GGTGATTATTCGGGCTTTGTGCCTAGCAGGCTATGTGCC
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCC
26099235 AGTGTATTGG
Statistics
Matches: 346, Mismatches: 32, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
37 6 0.02
38 56 0.16
39 281 0.81
40 3 0.01
ACGTcount: A:0.16, C:0.18, G:0.31, T:0.35
Consensus pattern (40 bp):
GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCT
Found at i:26098937 original size:78 final size:78
Alignment explanation
Indices: 26098807--26099234 Score: 585
Period size: 78 Copynumber: 5.5 Consensus size: 78
26098797 AATAGAAATA
* * *
26098807 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGTCGATGATTATTCGGGATATGTGCCTA
1 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTA
*
26098872 GTAGGCTTTGTGC
66 GCAGGCTTTGTGC
* * * * *
26098885 TGGTGATTATTTGGGCTAAGTGCCTAGTAGGCTTTGTGCTGGTGATTATTCGGGCTATATGCCTA
1 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTA
26098950 GCAGGCTTTGTGC
66 GCAGGCTTTGTGC
* * *
26098963 TGGTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCGCTGATTATTCGGGCT-TAGTGCCT
1 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTAT-GTGCCT
26099027 AGCAGGCTTTGTGC
65 AGCAGGCTTTGTGC
* * *
26099041 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGAT-ATTATTTGAGCTATGTACCT
1 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGG-TGATTATTCGGGCTATGTGCCT
26099105 AGCAGGCTTTGTGC
65 AGCAGGCTTTGTGC
* * * * *
26099119 CGGTGATTATTCGGGCTATGTGCCTAGTAGGCTTTGT-CAGGTGATTATTCGGGCTTTGTTCCTA
1 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTA
**
26099183 AAAGG-TTTGTGC
66 GCAGGCTTTGTGC
** *
26099195 CGGTGATTATTCGGGCTTTGTGCCTAGCAGGCTATGTGCC
1 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCC
26099235 AGTGTATTGG
Statistics
Matches: 311, Mismatches: 34, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
76 42 0.14
77 25 0.08
78 242 0.78
79 2 0.01
ACGTcount: A:0.16, C:0.18, G:0.31, T:0.35
Consensus pattern (78 bp):
CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTA
GCAGGCTTTGTGC
Found at i:26099018 original size:117 final size:117
Alignment explanation
Indices: 26098808--26099234 Score: 583
Period size: 117 Copynumber: 3.7 Consensus size: 117
26098798 ATAGAAATAC
* * *
26098808 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGTCGATGATTATTCGGGATATGTGCCTAG
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTAG
* * * *
26098873 TAGGCTTTGTGCTGGTGATTATTTGGGCTAAGTGCCTAGTAGGCTTTGTGCT
66 CAGGCTTTGTGCCGGTGATTATTCGGGCTAAGTGCCTAGTAGGCTTTGTGCA
* * *
26098925 GGTGATTATTCGGGCTATA-TGCCTAGCAGGCTTTGTGCTGGTGATTATTCAGGCTAAGTGCCTA
1 GGTGATTATTCGGGCTA-AGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTA
* * * *
26098989 GCAGGCTTTGTGCCGCTGATTATTCGGGCTTAGTGCCTAGCAGGCTTTGTGCC
65 GCAGGCTTTGTGCCGGTGATTATTCGGGCTAAGTGCCTAGTAGGCTTTGTGCA
* * *
26099042 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGAT-ATTATTTGAGCTATGTACCTA
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGG-TGATTATTCGGGCTATGTGCCTA
*
26099106 GCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTAGTAGGCTTTGT-CA
65 GCAGGCTTTGTGCCGGTGATTATTCGGGCTAAGTGCCTAGTAGGCTTTGTGCA
** * ** *
26099158 GGTGATTATTCGGGCTTTGTTCCTAAAAGG-TTTGTGCCGGTGATTATTCGGGCTTTGTGCCTAG
1 GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTAG
*
26099222 CAGGCTATGTGCC
66 CAGGCTTTGTGCC
26099235 AGTGTATTGG
Statistics
Matches: 272, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
114 1 0.00
115 40 0.15
116 27 0.10
117 202 0.74
118 2 0.01
ACGTcount: A:0.16, C:0.18, G:0.31, T:0.35
Consensus pattern (117 bp):
GGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTAG
CAGGCTTTGTGCCGGTGATTATTCGGGCTAAGTGCCTAGTAGGCTTTGTGCA
Found at i:26102870 original size:16 final size:17
Alignment explanation
Indices: 26102849--26102886 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
26102839 TTCAATATGG
*
26102849 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
26102865 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
26102883 ATTT
1 ATTT
26102887 GAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:26105032 original size:22 final size:22
Alignment explanation
Indices: 26104990--26105050 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
26104980 GGATATTATA
** *
26104990 TGATATGATATGTTATAAGATGC
1 TGATATGATATGACATGAGAT-C
26105013 -GATATGATATGACATGAGATC
1 TGATATGATATGACATGAGATC
* *
26105034 TGATTTGATTTGACATG
1 TGATATGATATGACATG
26105051 TTATTAAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.38
Consensus pattern (22 bp):
TGATATGATATGACATGAGATC
Found at i:26106283 original size:19 final size:19
Alignment explanation
Indices: 26106259--26106296 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26106249 CCTTCAGTTG
26106259 GAATCTTCGTAAAATAATT
1 GAATCTTCGTAAAATAATT
26106278 GAATCTTCGTAAAATAATT
1 GAATCTTCGTAAAATAATT
26106297 TTGCATCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (19 bp):
GAATCTTCGTAAAATAATT
Found at i:26110348 original size:13 final size:13
Alignment explanation
Indices: 26110330--26110354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26110320 TGTCGTTCCA
26110330 GTGACTTAATTTG
1 GTGACTTAATTTG
26110343 GTGACTTAATTT
1 GTGACTTAATTT
26110355 CATGGTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
GTGACTTAATTTG
Found at i:26111489 original size:41 final size:41
Alignment explanation
Indices: 26111431--26111668 Score: 266
Period size: 41 Copynumber: 5.8 Consensus size: 41
26111421 AGAGTTTTGG
*
26111431 GGGCATTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
* * *
26111472 GGGGCTTTAGCGACGTTTTTGAAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
* * *
26111513 AGGG-ATTTAGCGGCGTTTTTGAAAAAG-AGCCCCTAATGTTC
1 -GGGCCTTTAGCGGCGTTTTTGAAAAAGCA-CCGCTAATGCTC
* **
26111554 GGGCCTTTAGCGGCGTTTTTGGAAAAGTGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
** * *
26111595 GTACCTTTTGTGGCGTTTTT-AGAAAAGCACCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGA-AAAAGCACCGCTAATGCTC
** * *
26111636 GTACCTTTAGCTGCGTTTTTGAAAAAGCGCCGC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCACCGC
26111669 AAATAATAAA
Statistics
Matches: 166, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
40 3 0.02
41 159 0.96
42 4 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
Found at i:26111655 original size:123 final size:122
Alignment explanation
Indices: 26111431--26111662 Score: 297
Period size: 123 Copynumber: 1.9 Consensus size: 122
26111421 AGAGTTTTGG
**
26111431 GGGCATTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGGGCTTTAGCGACGTTTTTGAAA
1 GGGCATTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGACCTTTAGCGACGTTTTTGAAA
*
26111496 AAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAAAAAGAGCCCCTAATGTTC
66 AAGCACCGCTAATGCTCA-GGATTTAGCGGCGTTTTTGAAAAAGAGCCCCTAATGTTC
* * ** * * * *
26111554 GGGCCTTTAGCGGCGTTTTTGGAAAAGTGCCGCTAATGCTCGTACCTTTTGTGGCGTTTTT-AGA
1 GGGCATTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGACCTTTAGCGACGTTTTTGA-A
* *
26111618 AAAGCACCGCTAATGCTC-GTACCTTTAGCTGCGTTTTTGAAAAAG
65 AAAGCACCGCTAATGCTCAGGA--TTTAGCGGCGTTTTTGAAAAAG
26111663 CGCCGCAAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
121 2 0.02
122 1 0.01
123 90 0.97
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (122 bp):
GGGCATTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGACCTTTAGCGACGTTTTTGAAA
AAGCACCGCTAATGCTCAGGATTTAGCGGCGTTTTTGAAAAAGAGCCCCTAATGTTC
Found at i:26113692 original size:27 final size:28
Alignment explanation
Indices: 26113663--26113728 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
26113653 CAGTTTTGAG
*
26113663 TTTAGGGTTTAGGGTTTAGGGTTT-AGG
1 TTTAGGGTTTAGGGATTAGGGTTTAAGG
* * * *
26113690 TTTAGGGCTTGGGGATTGGGGTTTAAGA
1 TTTAGGGTTTAGGGATTAGGGTTTAAGG
*
26113718 TTTAGAGTTTA
1 TTTAGGGTTTA
26113729 CATTTTAGTG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
27 20 0.67
28 10 0.33
ACGTcount: A:0.18, C:0.02, G:0.38, T:0.42
Consensus pattern (28 bp):
TTTAGGGTTTAGGGATTAGGGTTTAAGG
Found at i:26113693 original size:6 final size:7
Alignment explanation
Indices: 26113662--26113728 Score: 64
Period size: 7 Copynumber: 9.7 Consensus size: 7
26113652 ACAGTTTTGA
26113662 GTTTAGG
1 GTTTAGG
26113669 GTTTAGG
1 GTTTAGG
26113676 GTTTAGG
1 GTTTAGG
26113683 GTTTA-G
1 GTTTAGG
26113689 GTTTAGG
1 GTTTAGG
* *
26113696 GCTTGGG
1 GTTTAGG
* *
26113703 GATTGGG
1 GTTTAGG
*
26113710 GTTTAAG
1 GTTTAGG
* *
26113717 ATTTAGA
1 GTTTAGG
26113724 GTTTA
1 GTTTA
26113729 CATTTTAGTG
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
6 6 0.12
7 43 0.88
ACGTcount: A:0.18, C:0.01, G:0.39, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:26118225 original size:43 final size:43
Alignment explanation
Indices: 26118136--26118377 Score: 360
Period size: 43 Copynumber: 5.6 Consensus size: 43
26118126 ATAATTTTTT
* * ** * *
26118136 TAAAGGTTAT-GTTTTTAGCGGCGTTTGTGACAAAAAACGCCAC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTG-GGAAAAGCGCCGC
*
26118179 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
26118222 TAAAGGTTATGGTCTTTAGCGGCGTTTGTGAGAAAAGTGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* *
26118265 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGAGCAGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
26118308 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
26118351 TAAAGGTCATGGTCTTTAGCGGCGTTT
1 TAAAGGTCATGGTCTTTAGCGGCGTTT
26118378 ATTTCTAAAA
Statistics
Matches: 181, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
43 164 0.91
44 17 0.09
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (43 bp):
TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:26121658 original size:23 final size:24
Alignment explanation
Indices: 26121611--26121667 Score: 98
Period size: 23 Copynumber: 2.4 Consensus size: 24
26121601 TGGGCTAGGA
*
26121611 TAATTTTATTAATCAATTCAACAT
1 TAATTTTATTAAGCAATTCAACAT
26121635 TAATTTTATTAAGCAA-TCAACAT
1 TAATTTTATTAAGCAATTCAACAT
26121658 TAATTTTATT
1 TAATTTTATT
26121668 TCGATCATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 17 0.53
24 15 0.47
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (24 bp):
TAATTTTATTAAGCAATTCAACAT
Found at i:26122672 original size:27 final size:27
Alignment explanation
Indices: 26122642--26122704 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
26122632 GAAAAAGAAT
26122642 AGAAGAGAAAGAAGATTCAGCCAGCAG
1 AGAAGAGAAAGAAGATTCAGCCAGCAG
** *
26122669 AGAAGAGAAAGAAGATTTGGCCAGTAG
1 AGAAGAGAAAGAAGATTCAGCCAGCAG
26122696 AGAAGAGAA
1 AGAAGAGAA
26122705 GAGAGAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.49, C:0.10, G:0.32, T:0.10
Consensus pattern (27 bp):
AGAAGAGAAAGAAGATTCAGCCAGCAG
Found at i:26123387 original size:35 final size:35
Alignment explanation
Indices: 26123337--26123488 Score: 214
Period size: 35 Copynumber: 4.3 Consensus size: 35
26123327 CAATTCCTCA
* * * * *
26123337 AAACACACCAAATGCTCACAAGATCTAGTCGAACTG
1 AAACACGCC-AATGCTCATAAGAGCTAGTCCAACCG
*
26123373 AAACACGCCAATGCTCATAAGAACTAGTCCAACCG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCG
* *
26123408 AAACACGCTAATGCTCATAAGAGGTAGTCCAACCG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCG
*
26123443 AAACACGCCAATACTCATAAGAGCTAGTCCAACCG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCG
26123478 AAACACGCCAA
1 AAACACGCCAA
26123489 ACAGAGAGTA
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 97 0.92
36 8 0.08
ACGTcount: A:0.41, C:0.30, G:0.15, T:0.14
Consensus pattern (35 bp):
AAACACGCCAATGCTCATAAGAGCTAGTCCAACCG
Found at i:26133766 original size:15 final size:15
Alignment explanation
Indices: 26133748--26133782 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
26133738 TGGTTTAAAT
26133748 TTATATATTATCATC
1 TTATATATTATCATC
*
26133763 TTATATATTATTATC
1 TTATATATTATCATC
26133778 -TATAT
1 TTATAT
26133783 TAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATATATTATCATC
Found at i:26134136 original size:20 final size:19
Alignment explanation
Indices: 26134079--26134136 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 19
26134069 TAAAAATACC
*
26134079 TTTTATATATCTTACATATA
1 TTTTATAT-TATTACATATA
*
26134099 TTTTATAATTCACGTACATATA
1 TTTTAT-ATT-A-TTACATATA
26134121 TCTTTATATTATTACA
1 T-TTTATATTATTACA
26134137 ATTTGTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
20 11 0.35
21 3 0.10
22 12 0.39
23 5 0.16
ACGTcount: A:0.34, C:0.12, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTTATATTATTACATATA
Found at i:26134422 original size:107 final size:106
Alignment explanation
Indices: 26134236--26134646 Score: 590
Period size: 107 Copynumber: 3.9 Consensus size: 106
26134226 AGGTTTTTCT
*
26134236 AAATAATGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATT
1 AAATAAGGCAATA-TTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATT
26134301 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
65 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
* *
26134343 AAATAAGGTAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTGACGTGCTGGGTTTCGATT
1 AAATAAGGCAATATTT-GCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATT
*
26134408 TCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
65 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
* * * * * *
26134450 AAATAAGGCAATAATTAGCGTTTGGAAAATCGAGGAAACGTACCCTAACGTGTTGGGTTTTGACT
1 AAATAAGGCAAT-ATTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATT
* * *
26134515 TCTTGTTTGATCAAATAGCCAAATATCC-TTTTAAACTTTCA
65 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
* ** * * * * *
26134556 AAGTGGGGCAATATTTGCGTTTGGAAATTTGAGAGAACGTGCCCTAACGTGCTGGGTCTCTATTT
1 AAATAAGGCAATATTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTT
*
26134621 CTTGTTTGACCAAATAGCCAAATATC
66 CTCGTTTGACCAAATAGCCAAATATC
26134647 TTCTTAACTT
Statistics
Matches: 271, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
105 67 0.25
106 24 0.09
107 177 0.65
108 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (106 bp):
AAATAAGGCAATATTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTT
CTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
Found at i:26150624 original size:20 final size:22
Alignment explanation
Indices: 26150580--26150627 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
26150570 CCTATATGTA
* *
26150580 TAAATTAACCTATATTAATAAC
1 TAAATTAACCTATATAAAAAAC
26150602 TAAATTAACC-AT-TAAAAAAC
1 TAAATTAACCTATATAAAAAAC
26150622 TAAATT
1 TAAATT
26150628 TAATAGTTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.50
21 2 0.08
22 10 0.42
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAATTAACCTATATAAAAAAC
Found at i:26151334 original size:12 final size:12
Alignment explanation
Indices: 26151317--26151345 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26151307 AAAGGAAAAA
26151317 ATTTTCAAAATT
1 ATTTTCAAAATT
26151329 ATTTTCAAAATT
1 ATTTTCAAAATT
26151341 ATTTT
1 ATTTT
26151346 TCTGAATCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTTTCAAAATT
Found at i:26155785 original size:23 final size:23
Alignment explanation
Indices: 26155759--26155807 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
26155749 ATAGTCCTTA
* *
26155759 TAATATCCCAAAAATTACTACTG
1 TAATACCCCAAAAATTACTACAG
*
26155782 TAATACCCCGAAAATTACTACAG
1 TAATACCCCAAAAATTACTACAG
26155805 TAA
1 TAA
26155808 GAAAGTAGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (23 bp):
TAATACCCCAAAAATTACTACAG
Found at i:26165277 original size:43 final size:43
Alignment explanation
Indices: 26165215--26165448 Score: 290
Period size: 43 Copynumber: 5.4 Consensus size: 43
26165205 TTTTAAAAAT
* * *
26165215 AAACGCCGCTA-AAAGTCATGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTATAGA-TCATGACTTTTAGCGGCGCTTTTCCCAC
* *
26165258 AAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTCCTAT
1 AAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTCCCAC
* * *
26165301 AAACGCCGCTATAGATCATGACTTTTAGTGGTGCTTTTCCGAC
1 AAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTCCCAC
* **
26165344 AAATGCCGCTATAGATCATGACTTTTAGTAGCGCTTTTCCCCAC
1 AAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTT-CCCAC
* * * **
26165388 AAACGCCGCTATAGATCATGAATTTTAGCAGCCCTCCTCCCAC
1 AAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTCCCAC
*
26165431 AAACACCGCTATAGATCA
1 AAACGCCGCTATAGATCA
26165449 CTTTTAGCGG
Statistics
Matches: 169, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
43 131 0.78
44 38 0.22
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTCCCAC
Found at i:26165943 original size:86 final size:87
Alignment explanation
Indices: 26165788--26165969 Score: 260
Period size: 86 Copynumber: 2.1 Consensus size: 87
26165778 CTCGTTGCAA
* *
26165788 CCTCTGCTTCTCTCGCTGTTGCATCAGCTTCAAGTTGTAGCTGGAGTTCTTCATATTTTCTTTGA
1 CCTCTGCTTCCCTCGCTGGTGCATCAGCTTCAAGTTGTAGCTGGAGTTCTTCATATTTTCTTTGA
26165853 ACCTCAGCTTCTCTCGACGCTG
66 ACCTCAGCTTCTCTCGACGCTG
* * * *
26165875 CCTCTGGTTCCCTCGCTGGTGCATCTGCTTTAAGTTGTA-TTGGAGTTCTTCATATTTTCTTT-A
1 CCTCTGCTTCCCTCGCTGGTGCATCAGCTTCAAGTTGTAGCTGGAGTTCTTCATATTTTCTTTGA
* * *
26165938 GACCTCAGCTTCTCTCAATGCTA
66 -ACCTCAGCTTCTCTCGACGCTG
26165961 CCTCTGCTT
1 CCTCTGCTT
26165970 TAAGTTGAGT
Statistics
Matches: 84, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
85 1 0.01
86 49 0.58
87 34 0.40
ACGTcount: A:0.14, C:0.28, G:0.18, T:0.41
Consensus pattern (87 bp):
CCTCTGCTTCCCTCGCTGGTGCATCAGCTTCAAGTTGTAGCTGGAGTTCTTCATATTTTCTTTGA
ACCTCAGCTTCTCTCGACGCTG
Found at i:26167557 original size:9 final size:9
Alignment explanation
Indices: 26167543--26167627 Score: 75
Period size: 9 Copynumber: 9.4 Consensus size: 9
26167533 TTTGGTTAAA
26167543 AATTACCCG
1 AATTACCCG
*
26167552 AATTACTCG
1 AATTACCCG
*
26167561 AATTAACCG
1 AATTACCCG
*
26167570 AATTAACCG
1 AATTACCCG
*
26167579 AATTAACCG
1 AATTACCCG
* *
26167588 AACTA-GCG
1 AATTACCCG
26167596 AATTA-CCG
1 AATTACCCG
*
26167604 AAAAATACCCG
1 --AATTACCCG
26167615 AATTACCCG
1 AATTACCCG
26167624 AATT
1 AATT
26167628 TTTTATTTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
8 8 0.12
9 49 0.77
10 4 0.06
11 3 0.05
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.22
Consensus pattern (9 bp):
AATTACCCG
Found at i:26167583 original size:36 final size:35
Alignment explanation
Indices: 26167543--26167627 Score: 91
Period size: 36 Copynumber: 2.4 Consensus size: 35
26167533 TTTGGTTAAA
* *
26167543 AATTACCCGAATTACTCGAATTAACCG-AATTAACCG
1 AATTACCCGAATTA-GCGAATT-ACCGAAAATAACCG
* * *
26167579 AATTAACCGAACTAGCGAATTACCGAAAAATACCCG
1 AATTACCCGAATTAGCGAATTACCG-AAAATAACCG
26167615 AATTACCCGAATT
1 AATTACCCGAATT
26167628 TTTTATTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
34 4 0.10
35 6 0.15
36 30 0.75
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.22
Consensus pattern (35 bp):
AATTACCCGAATTAGCGAATTACCGAAAATAACCG
Found at i:26170803 original size:50 final size:50
Alignment explanation
Indices: 26170679--26170911 Score: 253
Period size: 50 Copynumber: 4.7 Consensus size: 50
26170669 GATAATAACA
* *
26170679 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGCTT-T-ATGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-G-TTCTCATAT-CGG
* * * *
26170728 TTCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
** * *
26170778 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * *
26170828 TGCCAACACCATGTCCTAGACATGGTCTTACATGGGAG--CTCTTATCGTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATC--GG
*
26170878 TGCCAACTCCATGTCCCAGACATGGTCTTACATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
26170912 AGACCTTTTT
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
47 2 0.01
48 8 0.05
49 36 0.23
50 111 0.71
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:26170890 original size:100 final size:97
Alignment explanation
Indices: 26170679--26170919 Score: 297
Period size: 100 Copynumber: 2.4 Consensus size: 97
26170669 GATAATAACA
* * * * **
26170679 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGCTTTATGTACTTCCAATGCCATATCC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTTTATCTACTGCCAACACCATATCC
*
26170744 CAGATATGGTCTTACATGGGAGTTCTCATATCGG
65 CAGACATGGTCTTACATGGGAG-TCTCATATCGG
*
26170778 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCT-CGGTGCCAACACCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT-TTATCTAC--TGCCAACACCATAT
* *
26170842 CCTAGACATGGTCTTACATGGGAG-CTCTTATCGTGG
63 CCCAGACATGGTCTTACATGGGAGTCTCATATC--GG
* *
26170878 TGCCAACTCCATGTCCCAGACATGGTCTTACATGAGACCTTT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTT
26170920 TTACCCAAAT
Statistics
Matches: 125, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
98 10 0.08
99 43 0.34
100 72 0.58
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (97 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTTATCTACTGCCAACACCATATCCC
AGACATGGTCTTACATGGGAGTCTCATATCGG
Done.