Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 82 of 141
Found at i:26827659 original size:20 final size:20
Alignment explanation
Indices: 26827636--26827707 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
26827626 TAAATAGTTT
26827636 AAAAATTATATATAAAAGAA
1 AAAAATTATATATAAAAGAA
* *
26827656 AAAAATGT-TACAATAATAGCTAA
1 AAAAAT-TATA-TATAAAAG--AA
* *
26827679 AATAAGTATATATAAAAGAA
1 AAAAATTATATATAAAAGAA
26827699 AAAAATTAT
1 AAAAATTAT
26827708 TTGTTCAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
20 17 0.44
21 7 0.18
22 7 0.18
23 8 0.21
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (20 bp):
AAAAATTATATATAAAAGAA
Found at i:26836906 original size:24 final size:24
Alignment explanation
Indices: 26836857--26836907 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
26836847 ATTTGATATT
**
26836857 TATTAGAATAAGGTGTTTCACTCC
1 TATTAGAATAAGGTGTTTCAAGCC
*
26836881 TATTAGAATATGGT-TTTACAAGCC
1 TATTAGAATAAGGTGTTT-CAAGCC
26836905 TAT
1 TAT
26836908 AAATAGACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (24 bp):
TATTAGAATAAGGTGTTTCAAGCC
Found at i:26840088 original size:21 final size:22
Alignment explanation
Indices: 26840062--26840104 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
26840052 CCAACAAAGA
*
26840062 AATCAATTTTATG-AATTTTAC
1 AATCAATTGTATGAAATTTTAC
26840083 AATCAATTGTATGCAAATTTTA
1 AATCAATTGTATG-AAATTTTA
26840105 TCGCCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (22 bp):
AATCAATTGTATGAAATTTTAC
Found at i:26840803 original size:5 final size:5
Alignment explanation
Indices: 26840790--26840839 Score: 64
Period size: 5 Copynumber: 9.8 Consensus size: 5
26840780 AGAAAATACG
* * *
26840790 TTTCC TTTCT TTTCT TTTCT TTTCT TTTCC TTTCC TTTCTT TTTCT TTTC
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTC-T TTTCT TTTC
26840840 CATCAACAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
5 37 0.90
6 4 0.10
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTCT
Found at i:26840813 original size:15 final size:15
Alignment explanation
Indices: 26840790--26840840 Score: 75
Period size: 15 Copynumber: 3.3 Consensus size: 15
26840780 AGAAAATACG
26840790 TTTCCTTTCTTTTCT
1 TTTCCTTTCTTTTCT
* *
26840805 TTTCTTTTCTTTTCC
1 TTTCCTTTCTTTTCT
26840820 TTTCCTTTCTTTTTCT
1 TTTCCTTTC-TTTTCT
26840836 TTTCC
1 TTTCC
26840841 ATCAACAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 21 0.68
16 10 0.32
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTCCTTTCTTTTCT
Found at i:26841757 original size:16 final size:15
Alignment explanation
Indices: 26841737--26841778 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
26841727 TCGAATAAAA
*
26841737 TAAATCTTAAATAAT
1 TAAATCCTAAATAAT
*
26841752 TCAAATCCAAAATAAT
1 T-AAATCCTAAATAAT
26841768 TAAATCCTAAA
1 TAAATCCTAAA
26841779 ACTCAACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAATCCTAAATAAT
Found at i:26842101 original size:22 final size:21
Alignment explanation
Indices: 26842051--26842102 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
26842041 TATTATTATT
*
26842051 TTAAATTAATATTTTTTATAA
1 TTAAATTTATATTTTTTATAA
*
26842072 -AAATATTTATATATTTTTATAA
1 TTAA-ATTTATAT-TTTTTATAA
26842094 TTAAATTTA
1 TTAAATTTA
26842103 ACTAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 2 0.08
21 7 0.28
22 14 0.56
23 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTAAATTTATATTTTTTATAA
Found at i:26849153 original size:15 final size:16
Alignment explanation
Indices: 26849126--26849158 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
26849116 TTAAAATATA
26849126 AATTTACTATTTTAAT
1 AATTTACTATTTTAAT
*
26849142 AATTTA-TATTTTTAT
1 AATTTACTATTTTAAT
26849157 AA
1 AA
26849159 CTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTTACTATTTTAAT
Found at i:26851345 original size:16 final size:16
Alignment explanation
Indices: 26851324--26851357 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26851314 ATTAGAGTCA
26851324 ATTTTGAGTTCAAGTT
1 ATTTTGAGTTCAAGTT
*
26851340 ATTTTGAGTTTAAGTT
1 ATTTTGAGTTCAAGTT
26851356 AT
1 AT
26851358 ACATGTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.18, T:0.53
Consensus pattern (16 bp):
ATTTTGAGTTCAAGTT
Found at i:26854551 original size:284 final size:284
Alignment explanation
Indices: 26854220--26854738 Score: 774
Period size: 284 Copynumber: 1.8 Consensus size: 284
26854210 TGTATCAATG
*
26854220 AATTTCAACACAGGGATATAGAGATCAAAACACAAAATCTACCATATTCCAGAAATACAAAAGTC
1 AATTTCAACACAGGGATATAGAGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
* * *
26854285 AATGATCCAAACACAACAACAAAACAGCGTCAAGAACTGGGTTTTGGGTGTTGACTACAA-AAAC
66 AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAA-
* * **
26854349 AAAAAGGATCAAATCAATGAATTTCAACTAAATGAAGAAA-AA-AAATTGAACCCATTTAAGAAA
130 AAAAAGGATCAAATCAATAAATTTCAACTAAAT-AA-AAACAATAAACTGAACCCACCTAAGAAA
* *
26854412 ATGAGGCAATCTAATTGCAAAAGTGAACAAAACTAAGAAACAATCTATGTATTGCAATCCGCACA
193 ATAAGGCAATCTAATTGCAAAAGTGAACAAAACCAAGAAACAATCTATGTATTGCAATCCGCACA
26854477 ATGGAAATGTAAATGTTTAGATTGTGA
258 ATGGAAATGTAAATGTTTAGATTGTGA
* *
26854504 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACACAAGTC
1 AATTTCAACACAGGGATATAGAGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
* * *
26854569 AATGATCCAAATACAACAACAAAACAGCATCAAGAATTGGGTTTTTGGTGCTGAATACAAGAAAA
66 AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAAA
* * *** * *
26854634 ATATGGATTTTATCAATAAATTTCAGCTAAATAAAAACAATAACCTGAACCCACCTAAGAAAATA
131 AAAAGGATCAAATCAATAAATTTCAACTAAATAAAAACAATAAACTGAACCCACCTAAGAAAATA
* *
26854699 AGGCAATCTAATTGCAAAAGTGAGCAAAGCCAAGAAACAA
196 AGGCAATCTAATTGCAAAAGTGAACAAAACCAAGAAACAA
26854739 AAGAAAAAGG
Statistics
Matches: 208, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
282 3 0.01
283 4 0.02
284 198 0.95
285 3 0.01
ACGTcount: A:0.48, C:0.17, G:0.14, T:0.22
Consensus pattern (284 bp):
AATTTCAACACAGGGATATAGAGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAAA
AAAAGGATCAAATCAATAAATTTCAACTAAATAAAAACAATAAACTGAACCCACCTAAGAAAATA
AGGCAATCTAATTGCAAAAGTGAACAAAACCAAGAAACAATCTATGTATTGCAATCCGCACAATG
GAAATGTAAATGTTTAGATTGTGA
Found at i:26860047 original size:3 final size:3
Alignment explanation
Indices: 26860039--26860181 Score: 286
Period size: 3 Copynumber: 47.7 Consensus size: 3
26860029 TAGTTTACCC
26860039 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26860087 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26860135 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26860182 GCTTCAATCA
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 140 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26861447 original size:3 final size:3
Alignment explanation
Indices: 26861439--26861469 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
26861429 TAGTTTACCC
26861439 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26861470 CTTAGAACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26866522 original size:20 final size:20
Alignment explanation
Indices: 26866497--26866536 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26866487 CGTAAAATGA
*
26866497 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
26866517 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
26866537 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:26866526 original size:34 final size:35
Alignment explanation
Indices: 26866482--26866548 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
26866472 CAGTAAAATA
*
26866482 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
26866516 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
26866549 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:26866552 original size:14 final size:15
Alignment explanation
Indices: 26866476--26866552 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
26866466 GATTGCCAGT
* *
26866476 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
26866490 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
26866504 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
26866524 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
26866539 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
26866553 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:26872215 original size:18 final size:18
Alignment explanation
Indices: 26872192--26872226 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26872182 AATTATGTAT
26872192 TTATTCTGAGTATGATCC
1 TTATTCTGAGTATGATCC
26872210 TTATTCTGAGTATGATC
1 TTATTCTGAGTATGATC
26872227 TTGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.46
Consensus pattern (18 bp):
TTATTCTGAGTATGATCC
Found at i:26875422 original size:4 final size:4
Alignment explanation
Indices: 26875413--26875445 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
26875403 TAATGGACAC
26875413 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
26875446 ATCAAGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:26875717 original size:3 final size:3
Alignment explanation
Indices: 26875709--26875772 Score: 91
Period size: 3 Copynumber: 22.3 Consensus size: 3
26875699 AAATAGAAAT
26875709 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA AT- ATA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26875754 ATA AT- ATA ATA ATGA ATA A
1 ATA ATA ATA ATA AT-A ATA A
26875773 ATAAATATAA
Statistics
Matches: 56, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
2 8 0.14
3 45 0.80
4 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:26875721 original size:21 final size:21
Alignment explanation
Indices: 26875697--26875776 Score: 82
Period size: 21 Copynumber: 3.9 Consensus size: 21
26875687 ATAAGTAAAT
26875697 ATAAATAGA-AATATAATAATA
1 ATAAATA-ATAATATAATAATA
26875718 AT-AATAATAATAATAATAAT-
1 ATAAATAATAAT-ATAATAATA
26875738 ATAATATAATAATATAATAAT-
1 ATAA-ATAATAATATAATAATA
26875759 AT-AATAATGAATA-AATAA
1 ATAAATAAT-AATATAATAA
26875777 ATATAAAAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
19 11 0.20
20 14 0.26
21 21 0.39
22 8 0.15
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
ATAAATAATAATATAATAATA
Found at i:26875743 original size:8 final size:8
Alignment explanation
Indices: 26875706--26875766 Score: 88
Period size: 8 Copynumber: 7.4 Consensus size: 8
26875696 TATAAATAGA
26875706 AATATAAT
1 AATATAAT
26875714 AATAATAAT
1 AAT-ATAAT
26875723 AATAATAAT
1 AAT-ATAAT
26875732 AATA-ATAT
1 AATATA-AT
26875740 AATATAAT
1 AATATAAT
26875748 AATATAAT
1 AATATAAT
26875756 AATATAAT
1 AATATAAT
26875764 AAT
1 AAT
26875767 GAATAAATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
7 1 0.02
8 31 0.62
9 18 0.36
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AATATAAT
Found at i:26876604 original size:19 final size:19
Alignment explanation
Indices: 26876582--26876620 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
26876572 TTAAAGAATG
26876582 AATGAGTAAATAAATAAGA
1 AATGAGTAAATAAATAAGA
26876601 AATGAGTAAATAAATAAGA
1 AATGAGTAAATAAATAAGA
26876620 A
1 A
26876621 CGAAATGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.15, T:0.21
Consensus pattern (19 bp):
AATGAGTAAATAAATAAGA
Found at i:26876625 original size:23 final size:22
Alignment explanation
Indices: 26876582--26876640 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 22
26876572 TTAAAGAATG
26876582 AATGAGTAAATAAAT---AAGA
1 AATGAGTAAATAAATAAGAAGA
26876601 AATGAGTAAATAAATAAGAACGA
1 AATGAGTAAATAAATAAGAA-GA
*
26876624 AATGA-AAAATAAA-AAGA
1 AATGAGTAAATAAATAAGA
26876641 CCACATTTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
19 15 0.43
21 4 0.11
22 9 0.26
23 7 0.20
ACGTcount: A:0.66, C:0.02, G:0.15, T:0.17
Consensus pattern (22 bp):
AATGAGTAAATAAATAAGAAGA
Found at i:26889049 original size:4 final size:4
Alignment explanation
Indices: 26889040--26889065 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
26889030 ATTATCAATA
26889040 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
26889066 TTTATTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:26890594 original size:24 final size:25
Alignment explanation
Indices: 26890567--26890613 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
26890557 TCATTTTGTT
26890567 TTTCTTTTTAAG-TTTTTTATTTAA
1 TTTCTTTTTAAGTTTTTTTATTTAA
26890591 TTTCTTTTTAAGTTTTTTTATTT
1 TTTCTTTTTAAGTTTTTTTATTT
26890614 GTCCTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (25 bp):
TTTCTTTTTAAGTTTTTTTATTTAA
Found at i:26897639 original size:40 final size:40
Alignment explanation
Indices: 26897586--26897684 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 40
26897576 AACACACCAG
* *
26897586 TTTGGCACCCAGTGCCTCATCGGATAATTCAAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAAATCAAAGTAATAA
* * * *
26897626 TTTGACACGCAGTGTCTCATCGGCTAAATCGAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCGGATAAATCAAAGTAATAA
* *
26897664 TTAG-CACCCAATGCCTCATCG
1 TTTGACACCCAGTGCCTCATCG
26897685 AATTAATCCG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
37 14 0.29
38 5 0.10
39 1 0.02
40 29 0.59
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCGGATAAATCAAAGTAATAA
Found at i:26898687 original size:40 final size:41
Alignment explanation
Indices: 26898631--26898707 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 41
26898621 TTTATTACTT
*
26898631 ATTTTATTATTATAATATA-ATACATATACTTAAACATTAAG
1 ATTTTATTATTATAATATATATA-ATAAACTTAAACATTAAG
*
26898672 ATTTTA-TATTATAATATATATAATAAACTTACACAT
1 ATTTTATTATTATAATATATATAATAAACTTAAACAT
26898708 ATTTTAATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
40 24 0.73
41 9 0.27
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.44
Consensus pattern (41 bp):
ATTTTATTATTATAATATATATAATAAACTTAAACATTAAG
Found at i:26900609 original size:14 final size:14
Alignment explanation
Indices: 26900590--26900619 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26900580 CAGACTTCGC
26900590 TCCTACAAACACTA
1 TCCTACAAACACTA
26900604 TCCTACAAACACTA
1 TCCTACAAACACTA
26900618 TC
1 TC
26900620 TCAAACTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (14 bp):
TCCTACAAACACTA
Found at i:26911342 original size:16 final size:16
Alignment explanation
Indices: 26911316--26911358 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
26911306 AAAAAAATAT
**
26911316 ACAAACAAAAGATGGAA
1 ACAAAC-AAAGAAAGAA
26911333 ACAAACAAAGAAAGAA
1 ACAAACAAAGAAAGAA
*
26911349 ACAAAAAAAG
1 ACAAACAAAG
26911359 GTACAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.72, C:0.12, G:0.14, T:0.02
Consensus pattern (16 bp):
ACAAACAAAGAAAGAA
Found at i:26913025 original size:32 final size:32
Alignment explanation
Indices: 26912989--26913093 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
26912979 CATTAATGAT
*
26912989 AATTTTCAAAAGATTTAAGAGAATTTAATTAA
1 AATTTTCAAAAGATTTAAGAGAATATAATTAA
** * *
26913021 AATTTTCAAAAGAAATAAAAG-ATATAATGAA
1 AATTTTCAAAAGATTTAAGAGAATATAATTAA
* **
26913052 ATTTTTCAAAA-ATTT--GAGCAACCTAATTAA
1 AATTTTCAAAAGATTTAAGAG-AATATAATTAA
26913082 AATTTTCTAAAA
1 AATTTTC-AAAA
26913094 ACTTTAAAGG
Statistics
Matches: 57, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
28 2 0.04
30 15 0.26
31 22 0.39
32 18 0.32
ACGTcount: A:0.51, C:0.07, G:0.08, T:0.34
Consensus pattern (32 bp):
AATTTTCAAAAGATTTAAGAGAATATAATTAA
Found at i:26913061 original size:31 final size:31
Alignment explanation
Indices: 26912982--26913062 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 31
26912972 TTTTTAACAT
** * *
26912982 TAATGATAATTTTCAAAAGATTTAAGAGAATT
1 TAATGA-AATTTTCAAAAGAAATAAAAGAATA
*
26913014 TAATTAAAATTTTCAAAAGAAATAAAAG-ATA
1 TAA-TGAAATTTTCAAAAGAAATAAAAGAATA
26913045 TAATGAAATTTTTCAAAA
1 TAATGAAA-TTTTCAAAA
26913063 ATTTGAGCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
30 4 0.10
31 14 0.34
32 21 0.51
33 2 0.05
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.35
Consensus pattern (31 bp):
TAATGAAATTTTCAAAAGAAATAAAAGAATA
Found at i:26913138 original size:18 final size:17
Alignment explanation
Indices: 26913111--26913145 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
26913101 AGGAGAAATG
26913111 AAAATTTCTAAAAATTT
1 AAAATTTCTAAAAATTT
26913128 AAAATTTTCTAAAAATTT
1 AAAA-TTTCTAAAAATTT
26913146 CAAGAAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
AAAATTTCTAAAAATTT
Found at i:26915136 original size:127 final size:127
Alignment explanation
Indices: 26914851--26915547 Score: 1066
Period size: 127 Copynumber: 5.5 Consensus size: 127
26914841 GATAAAATCA
* * * * * *
26914851 AAGCAGGATGCT-TTATCAGAAGGATTTCTGAAGTCGTGCCCACGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
26914915 TAGGTCCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAG-TATAAAAAACGCTTC
65 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAAACGCTTC
* * *
26914976 AAGCAGGATGCT-TTATGAGAAGAATTTTTGAAATCGCGCCCTTGTGGACGTGCTTTTGCTACAG
1 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
26915040 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAAATGCTTC
65 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAAACGCTTC
* *
26915103 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCACTCGTGGACGCGCTTTTGCTACAAT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
26915168 AGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTT
66 AGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAAACGCTTC
* *
26915230 AAGAAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTAGCTACAGT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* * * *
26915295 AGGTCCTGGAAGAAATAATTTCAAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACCACTTC
66 AGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAAACGCTTC
* *
26915357 AAGCAGGATGCTATTAGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACACGCTTTTGCTACAGT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
26915422 AGGTCCTGGAA-AAATAATTTCGAGTTAACGTTTCTGAGCAAATAG-T-ATAAAAACGCTTC
66 AGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAAACGCTTC
* * **
26915481 TAGCAGGATGCTATTTGAAAAGAATTTGTGAAATCAAGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
26915546 AG
66 AG
26915548 CATGTTTGGG
Statistics
Matches: 528, Mismatches: 41, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
124 71 0.13
125 69 0.13
126 66 0.12
127 320 0.61
128 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (127 bp):
AAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTAAAAAAAACGCTTC
Found at i:26916574 original size:22 final size:22
Alignment explanation
Indices: 26916534--26916734 Score: 264
Period size: 22 Copynumber: 9.2 Consensus size: 22
26916524 TACCACACCG
**
26916534 GTTAAGGGGCTAGGGTTTTTAA
1 GTTAAGGGTTTAGGGTTTTTAA
* *
26916556 GTTAAGTG-TGAGGGTTTTTAA
1 GTTAAGGGTTTAGGGTTTTTAA
*
26916577 GTTAAGGGTTTAGGGTTTTAAA
1 GTTAAGGGTTTAGGGTTTTTAA
* **
26916599 GTTAAGGGGTTAATGTTTTTAA
1 GTTAAGGGTTTAGGGTTTTTAA
26916621 GTTAAGGGTTTAGGGTTTTTAA
1 GTTAAGGGTTTAGGGTTTTTAA
* *
26916643 GTTAAGAGTTTAGGGTTTTAAA
1 GTTAAGGGTTTAGGGTTTTTAA
*
26916665 GTTAATGG-TTAGGGTTTTTAA
1 GTTAAGGGTTTAGGGTTTTTAA
26916686 GTTAAGGGTTTATGGG-TTTTAA
1 GTTAAGGGTTTA-GGGTTTTTAA
*
26916708 GTTAAGGGTTTAGGGTTTTAAA
1 GTTAAGGGTTTAGGGTTTTTAA
26916730 GTTAA
1 GTTAA
26916735 TAAGGAAAAG
Statistics
Matches: 155, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
21 40 0.26
22 112 0.72
23 3 0.02
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (22 bp):
GTTAAGGGTTTAGGGTTTTTAA
Found at i:26916677 original size:87 final size:87
Alignment explanation
Indices: 26916534--26916734 Score: 280
Period size: 87 Copynumber: 2.3 Consensus size: 87
26916524 TACCACACCG
** * *
26916534 GTTAAGGGGCTAGGGTTTTTAAGTTAAGTGTGAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTAAA
1 GTTAAGGGTTTAGGGTTTTTAAGTTAAGAGTGAGGGTTTTAAAGTTAAGGGTTTAGGGTTTTAAA
*
26916599 GTTAAGGGGTTAAT-GTTTTTAA
66 GTTAA-GGGTTAATGGGTTTTAA
* * *
26916621 GTTAAGGGTTTAGGGTTTTTAAGTTAAGAGTTTAGGGTTTTAAAGTTAATGG-TTAGGGTTTTTA
1 GTTAAGGGTTTAGGGTTTTTAAGTTAAGAG-TGAGGGTTTTAAAGTTAAGGGTTTAGGGTTTTAA
*
26916685 AGTTAAGGGTTTATGGGTTTTAA
65 AGTTAAGGGTTAATGGGTTTTAA
*
26916708 GTTAAGGGTTTAGGGTTTTAAAGTTAA
1 GTTAAGGGTTTAGGGTTTTTAAGTTAA
26916735 TAAGGAAAAG
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
86 7 0.07
87 77 0.75
88 18 0.18
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (87 bp):
GTTAAGGGTTTAGGGTTTTTAAGTTAAGAGTGAGGGTTTTAAAGTTAAGGGTTTAGGGTTTTAAA
GTTAAGGGTTAATGGGTTTTAA
Found at i:26916682 original size:65 final size:65
Alignment explanation
Indices: 26916544--26916735 Score: 298
Period size: 65 Copynumber: 3.0 Consensus size: 65
26916534 GTTAAGGGGC
* * *
26916544 TAGGGTTTTTAAGTTAAGTG-TGAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGGGG
1 TAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-TGG
26916608 T
65 T
** *
26916609 TAATGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGAGTTTAGGGTTTTAAAGTTAATGGT
1 TAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAATGGT
26916674 TAGGGTTTTTAAGTTAAGGGTTTATGGG-TTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAT
1 TAGGGTTTTTAAGTTAAGGGTTTA-GGGTTTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAT
26916736 AAGGAAAAGG
Statistics
Matches: 116, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
65 75 0.65
66 41 0.35
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (65 bp):
TAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAATGGT
Found at i:26920054 original size:7 final size:7
Alignment explanation
Indices: 26920044--26920069 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26920034 TTATATACAT
26920044 AATACTA
1 AATACTA
26920051 AATACTA
1 AATACTA
26920058 AATACTA
1 AATACTA
26920065 AATAC
1 AATAC
26920070 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:26920275 original size:20 final size:20
Alignment explanation
Indices: 26920238--26920275 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26920228 TTTATTTTTA
*
26920238 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
26920258 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
26920276 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:26924658 original size:7 final size:7
Alignment explanation
Indices: 26924646--26924680 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
26924636 CCACAACTGA
26924646 TACTAAC
1 TACTAAC
26924653 TACTAAC
1 TACTAAC
26924660 TACTAAC
1 TACTAAC
26924667 TACTAAC
1 TACTAAC
26924674 TACTAAC
1 TACTAAC
26924681 AGATACTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (7 bp):
TACTAAC
Found at i:26930511 original size:7 final size:7
Alignment explanation
Indices: 26930499--26930526 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
26930489 CCACAACTGA
26930499 TACTAAC
1 TACTAAC
26930506 TACTAAC
1 TACTAAC
26930513 TACTAAC
1 TACTAAC
26930520 TACTAAC
1 TACTAAC
26930527 AGACACTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (7 bp):
TACTAAC
Found at i:26932598 original size:15 final size:14
Alignment explanation
Indices: 26932555--26932603 Score: 52
Period size: 13 Copynumber: 3.7 Consensus size: 14
26932545 TATTTTTCCC
*
26932555 TTTA-TTATTGTTA
1 TTTATTTATTCTTA
26932568 TTT-TTTATTC-TA
1 TTTATTTATTCTTA
26932580 -TTATTTATTACTTA
1 TTTATTTATT-CTTA
26932594 TTTATTTATT
1 TTTATTTATT
26932604 TAAATTATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
11 2 0.07
12 8 0.27
13 9 0.30
14 2 0.07
15 9 0.30
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTATTTATTCTTA
Found at i:26943132 original size:45 final size:44
Alignment explanation
Indices: 26943064--26944268 Score: 867
Period size: 45 Copynumber: 26.9 Consensus size: 44
26943054 TAATCGTGGT
** *
26943064 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCATTTTGAAGATAGC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C
* * *
26943109 AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* *
26943153 AAA-CTTTATCTCTCTGAAGTTGCAATGGAGCAGGTTAAAGATATC
1 AAATC-TTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C
* * **
26943198 AAATCTTATCTC-CTTGAAGTTGCAGTGAAGCATATTAAAGCGAC
1 AAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * * *
26943242 AAATCCTATAC-CTCTGAAGTTACAATGG-GTCGGATTAAATCAAGTTAC
1 AAATCTTAT-CTCTCTGAAGTTGCAGTGGAG-CAGATT--A--AAGATAC
* * * * ** *
26943290 AAATCTTATCTCCCTGAAGTTGCAGTGCAGTAGATT-GAGCCAT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * *
26943333 AAATCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTAAAAATAGA
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C
** * **
26943378 AAATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATTAAACCTAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * * * *
26943422 AAATCTTATTTCTCTGAAGTTGCAGTAGAACAAATTCAAGTTAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* *
26943466 AAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATAAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AAAGAT-AC
* * *
26943511 AAATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGCTAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * ** * * *
26943555 AAACCTTTATCTCCCTGAAGTTTTAGTGGAGTAGGTTAAAGCTAC
1 AAATC-TTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * *
26943600 AAATCTTATCTC-CTTGAAGTTGTAGTGGAGCAGATTGAGGATAAC
1 AAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGAT-AC
* * * * *
26943645 AAAAT-TTCTTTCTCTAAAGTTGCAGTGGAGCAGATTGAAGATAGG
1 -AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C
* * * *
26943690 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTAT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
** * * * * **
26943734 AGGTTTTTATCTCTTTGAAGTTGCAATGGAGTAGATTAAAGCCAC
1 A-AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * * * *
26943779 AAATATTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAGGATAAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGAT-AC
* * *
26943824 AAATTTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAA-ATAAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AAAGAT-AC
* ** *
26943869 AAATCTTATCTCTTTGAAGTTGCAGTTAAGCAGATTAAAGCTAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * * *
26943913 AAACCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAAATGAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGAT-AC
* * *
26943958 AAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* ** * *
26944002 AAAACTTATCTCTCT-AGAGTTGCAGCAGAGCATG-TCAAA-ACCAC
1 AAATCTTATCTCTCTGA-AGTTGCAGTGGAGCA-GATTAAAGA-TAC
* * * * *
26944046 AAATCTTATCTC-CTTGAAGTTACAGTGGAGCAAATTGAATATGC
1 AAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * * * **
26944090 GAATCTTATTTCCCTGAAGTTACAATGGAAAAGATTAAAGCTACAAGTTAC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAG-----A--TAC
* * *
26944141 AAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGC
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C
* * * * *
26944186 AAATCTTATATCTCT-AAATATGTAGTGGAGCAGATTGAATATGA-
1 AAATCTTATCTCTCTGAAGT-TGCAGTGGAGCAGATTAAAGAT-AC
* * * *
26944230 GAATCTTATTTC-CTTAAAGTTGCAGTGGAACAGATTAAA
1 AAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAA
26944269 ACTACAAGTT
Statistics
Matches: 921, Mismatches: 189, Indels: 101
0.76 0.16 0.08
Matches are distributed among these distances:
43 42 0.05
44 368 0.40
45 432 0.47
46 10 0.01
47 1 0.00
48 30 0.03
49 2 0.00
51 36 0.04
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (44 bp):
AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
Found at i:26943184 original size:89 final size:88
Alignment explanation
Indices: 26943064--26944268 Score: 892
Period size: 89 Copynumber: 13.4 Consensus size: 88
26943054 TAATCGTGGT
** * * *
26943064 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCATTTTGAAGATAGCAAACCTTATCTCTCTGAAGT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTATCTCCCTGAAGT
*
26943129 TGCAGTAGAGCAGATTAAAGCTAC
65 TGCAGTGGAGCAGATTAAAGCTAC
* * *
26943153 AAA-CTTTATCTCTCTGAAGTTGCAATGGAGCAGGTTAAAGATATCAAATCTTATCTCCTTGAAG
1 AAATC-TTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTATCTCCCTGAAG
* * *
26943217 TTGCAGTGAAGCATATTAAAGCGAC
64 TTGCAGTGGAGCAGATTAAAGCTAC
* * * * *
26943242 AAATCCTATAC-CTCTGAAGTTACAATGG-GTCGGATTAAATCAAGTTACAAATCTTATCTCCCT
1 AAATCTTAT-CTCTCTGAAGTTGCAGTGGAG-CAGATT--A--AAGATACAAATCTTATCTCCCT
* * * * *
26943305 GAAGTTGCAGTGCAGTAGATT-GAGCCAT
60 GAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * * *
26943333 AAATCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTAAAAATAGAAAATCTTATCTCTCTGAAGT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTATCTCCCTGAAGT
** * *
26943398 TGCAGTAAAGTAGATTAAACCTAC
65 TGCAGTGGAGCAGATTAAAGCTAC
* * * * * * *
26943422 AAATCTTATTTCTCTGAAGTTGCAGTAGAACAAATTCAAGTTACAAATATTATCTCCCTGAAGTT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTT
*
26943487 GCAGTGGAGCAGATTGAAA-ATAAC
66 GCAGTGGAGCAGATT-AAAGCT-AC
* * * *
26943511 AAATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGCTACAAACCTTTATCTCCCTGAAGT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATC-TTATCTCCCTGAAGT
** * *
26943576 TTTAGTGGAGTAGGTTAAAGCTAC
65 TGCAGTGGAGCAGATTAAAGCTAC
* * * * * * *
26943600 AAATCTTATCTC-CTTGAAGTTGTAGTGGAGCAGATTGAGGATAACAAAAT-TTCTTTCTCTAAA
1 AAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGAT-AC-AAATCTTATCTCCCTGAA
* * *
26943663 GTTGCAGTGGAGCAGATTGAAGATAGG
63 GTTGCAGTGGAGCAGATTAAAGCTA-C
* * * * ** * **
26943690 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAGGTTTTTATCTCTTTGAAGT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATACA-AATCTTATCTCCCTGAAGT
* * *
26943755 TGCAATGGAGTAGATTAAAGCCAC
65 TGCAGTGGAGCAGATTAAAGCTAC
* * * * * * * *
26943779 AAATATTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAGGATAACAAATTTTATCTCCCTAAAGT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGAT-ACAAATCTTATCTCCCTGAAGT
*
26943844 TGCAGTGGAGCAGATTGAAA-ATAAC
65 TGCAGTGGAGCAGATT-AAAGCT-AC
* ** * * *
26943869 AAATCTTATCTCTTTGAAGTTGCAGTTAAGCAGATTAAAGCTACAAACCTTATCTCCCTAAAGTT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTT
* **
26943934 GCAGTGGAGCAAATTAAAAATGAC
66 GCAGTGGAGCAGATTAAAGCT-AC
* * * * *
26943958 AAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTACAAAACTTATCTCTCT-AGAGT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGA-AGT
** * * *
26944022 TGCAGCAGAGCATG-TCAAAACCAC
65 TGCAGTGGAGCA-GATTAAAGCTAC
* * * * * * *
26944046 AAATCTTATCTC-CTTGAAGTTACAGTGGAGCAAATTGAATATGCGAATCTTATTTCCCTGAAGT
1 AAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGT
* * **
26944110 TACAATGGAAAAGATTAAAGCTACAAGTTAC
65 TGCAGTGGAGCAGATTAAAG---C----TAC
* * * * * *
26944141 AAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATATCTCT-AAAT
1 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTATCTCCCTGAAGT
* * *
26944205 ATGTAGTGGAGCAGATTGAA--TATG
65 -TGCAGTGGAGCAGATTAAAGCTA-C
* * *
26944229 AGAATCTTATTTC-CTTAAAGTTGCAGTGGAACAGATTAAA
1 A-AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAA
26944269 ACTACAAGTT
Statistics
Matches: 882, Mismatches: 189, Indels: 90
0.76 0.16 0.08
Matches are distributed among these distances:
87 8 0.01
88 135 0.15
89 459 0.52
90 135 0.15
91 36 0.04
92 34 0.04
93 5 0.01
95 43 0.05
96 27 0.03
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (88 bp):
AAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTAAAGCTAC
Found at i:26943644 original size:134 final size:133
Alignment explanation
Indices: 26943064--26944275 Score: 853
Period size: 134 Copynumber: 9.0 Consensus size: 133
26943054 TAATCGTGGT
** * * *
26943064 AAATCTTATCT-CTCTGAAGTTGCAGTGGAGCATTTTGAAGATAGCAAACCTTATCTCTCTGAAG
1 AAATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCTCTGAAG
* * *
26943128 TTGCAGTAGAGCAGATTAAAGCTACAAA-CTTTATCTCTCTGAAGTTGCAATGGAGCAGGTTAAA
65 TTGCAGTAGAGCAGATTAAAGATACAAATC-TTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAA
*
26943192 GATATC
129 GCTA-C
* * ** *
26943198 AAATCTTATCTCCTTGAAGTTGCAGTGAAGCATATTAAAG-CGACAAATCCTATAC-CTCTGAAG
1 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTAT-CTCTCTGAAG
* * * * * * * *
26943261 TTACAAT-GGGTCGGATTAAATCAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGCAGTAGAT
65 TTGCAGTAGAG-CAGATT--A--AAGATACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAT
* * *
26943325 T-GAGCCAT
125 TAAAGCTAC
* * *
26943333 AAATCTTATCT-CTCTGAAGTTGTAGTGGAGTAGATTAAAAATAGA-AAATCTTATCTCTCTGAA
1 AAATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTAAAGATA-ACAAATCTTATCTCTCTGAA
* * ** * * * * *
26943396 GTTGCAGTAAAGTAGATTAAACCTACAAATCTTATTTCTCTGAAGTTGCAGTAGAACAAATTCAA
64 GTTGCAGTAGAGCAGATTAAAGATACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAA
*
26943461 GTTAC
129 GCTAC
* *
26943466 AAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATAACAAATCTTATCTCTCTGAAG
1 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATT-AAAGATAACAAATCTTATCTCTCTGAAG
* * * * ** * *
26943530 TTACAGTAGAGCAGATTAAAGCTACAAACCTTTATCTCCCTGAAGTTTTAGTGGAGTAGGTTAAA
65 TTGCAGTAGAGCAGATTAAAGATACAAATC-TTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAA
26943595 GCTAC
129 GCTAC
* * * * * *
26943600 AAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAGGATAACAAAAT-TTCTTTCTCTAAAG
1 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGATAAC-AAATCTTATCTCTCTGAAG
* * * * *
26943664 TTGCAGTGGAGCAGATTGAAGATAGGAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAA
65 TTGCAGTAGAGCAGATTAAAGATA-CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAA
*
26943729 GCTAT
129 GCTAC
** * * * * ** * * *
26943734 AGGTTTTTATCTCTTTGAAGTTGCAATGGAGTAGATTAAAG-CCACAAATATTATCTCCCTAAAG
1 A-AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCTCTGAAG
* * * * * * *
26943798 TTGTAGTGGAGCAGATTGAGGATAACAAATTTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAA
65 TTGCAGTAGAGCAGATTAAAGAT-ACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AA
*
26943863 A-ATAAC
128 AGCT-AC
* ** * * * *
26943869 AAATCTTATCTCTTTGAAGTTGCAGTTAAGCAGATTAAAGCT-ACAAACCTTATCTCCCTAAAGT
1 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCTCTGAAGT
* * * * *
26943933 TGCAGTGGAGCAAATTAAAAATGACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAG
66 TGCAGTAGAGCAGATTAAAGAT-ACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAG
26943998 CTAC
130 CTAC
* * ** * **
26944002 AAAACTTATCTCTCTAG-AGTTGCAGCAGAGCATG-TCAAA-ACCACAAATCTTATCTC-CTTGA
1 AAATCTTATCTC-CTTGAAGTTGCAGTGGAGCA-GATTAAAGATAACAAATCTTATCTCTC-TGA
* * * * * * * * * * * **
26944063 AGTTACAGTGGAGCAAATTGAATATGCGAATCTTATTTCCCTGAAGTTACAATGGAAAAGATTAA
63 AGTTGCAGTAGAGCAGATTAAAGATACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAA
26944128 AGCTACAAGTTAC
128 AG---C----TAC
* * * * * *
26944141 AAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATATCTCT-AAAT
1 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCTCTGAAGT
* * * * * * * *
26944205 ATGTAGTGGAGCAGATTGAATATGA-GAATCTTATTTC-CTTAAAGTTGCAGTGGAACAGATTAA
66 -TGCAGTAGAGCAGATTAAAGAT-ACAAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAA
*
26944268 AACTAC
128 AGCTAC
26944274 AA
1 AA
26944276 GTTACAAATC
Statistics
Matches: 852, Mismatches: 180, Indels: 93
0.76 0.16 0.08
Matches are distributed among these distances:
132 71 0.08
133 185 0.22
134 345 0.40
135 81 0.10
136 28 0.03
137 38 0.04
138 4 0.00
139 33 0.04
140 66 0.08
141 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (133 bp):
AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCTCTGAAGT
TGCAGTAGAGCAGATTAAAGATACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGC
TAC
Found at i:26943718 original size:179 final size:179
Alignment explanation
Indices: 26943064--26944275 Score: 762
Period size: 179 Copynumber: 6.8 Consensus size: 179
26943054 TAATCGTGGT
* ** * * * * *
26943064 AAATCTTATCT-CTCTGAAGTTGCAGTGGAGCATTTTGAAGATAGCAAACCTTATC-TCTCTGAA
1 AAATCTTATCTCCTCTGAAGTTGCAGTAGAGCAGATTGAGGATAACAAA-ATT-TCTTCCCTAAA
* * * * *
26943127 GTTGCAGTAGAGCAGATT-AAAGCT-ACAAA-CTTTATCTCTCTGAAGTTGCAATGGAGCAGGTT
64 GTTGCAGTGGAGCAGATTGAAA-ATAACAAATC-TTATCTCTCTGAAGTTGCAGTAGAGCAGATT
* * * * * * *
26943189 AAAGATATCAAATC-TTATCTCCTTGAAGTTGCAGTGAAGCATATTAAAGCGAC
127 AAAGCTA-CAAACCTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTAC
* * * * * * * * *
26943242 AAATCCTAT-ACCTCTGAAGTTACAAT-GGGTCGGATT-A-AATCAAGTTACAAATCTTATCTCC
1 AAATCTTATCTCCTCTGAAGTTGCAGTAGAG-CAGATTGAGGAT-AA--CA-AAAT-TTCT-TCC
* * * ** * * *
26943303 CTGAAGTTGCAGTGCAGTAGATTGAGCCAT---AAATCTTATCTCTCTGAAGTTGTAGTGGAGTA
59 CTAAAGTTGCAGTGGAGCAGATTGA-AAATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCA
** * * * ** *
26943365 GATTAAAAATAGAAA-ATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATTAAACCTAC
123 GATTAAAGCTACAAACCT-TTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTAC
* * * * * * *
26943422 AAATCTTAT-TTCTCTGAAGTTGCAGTAGAACAAATTCAAG-TTACAAATATTATC-TCCCTGAA
1 AAATCTTATCTCCTCTGAAGTTGCAGTAGAGCAGATTGAGGATAACAAA-ATT-TCTTCCCTAAA
*
26943484 GTTGCAGTGGAGCAGATTGAAAATAACAAATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTAA
64 GTTGCAGTGGAGCAGATTGAAAATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAA
** *
26943549 AGCTACAAACCTTTATCTCCCTGAAGTTTTAGTGGAGTAGGTTAAAGCTAC
129 AGCTACAAACCTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTAC
* * *
26943600 AAATCTTATCTCCT-TGAAGTTGTAGTGGAGCAGATTGAGGATAACAAAATTTCTTTCTCTAAAG
1 AAATCTTATCTCCTCTGAAGTTGCAGTAGAGCAGATTGAGGATAACAAAATTTC-TTCCCTAAAG
* ** *
26943664 TTGCAGTGGAGCAGATTGAAGATAGGAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAA
65 TTGCAGTGGAGCAGATTGAAAATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAA
* **** ** * *
26943729 GCTATAGGTTTTTATCTCTTTGAAGTTGCAATGGAGTAGATTAAAGCCAC
130 GCTACAAACCTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTAC
* * * * * *
26943779 AAATATTATCTCC-CTAAAGTTGTAGTGGAGCAGATTGAGGATAACAAATTTTATCTCCCTAAAG
1 AAATCTTATCTCCTCTGAAGTTGCAGTAGAGCAGATTGAGGATAACAAAATTTCT-TCCCTAAAG
*
26943843 TTGCAGTGGAGCAGATTGAAAATAACAAATCTTATCTCTTTGAAGTTGCAGTTA-AGCAGATTAA
65 TTGCAGTGGAGCAGATTGAAAATAACAAATCTTATCTCTCTGAAGTTGCAG-TAGAGCAGATTAA
* * * **
26943907 AGCTACAAACC-TTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAAATGAC
129 AGCTACAAACCTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCT-AC
* * * * * *
26943958 AAATCTTATCT-CTCTGAAGTTGCAGTAGAGTAGATTAAAGCT-ACAAAACTTATC-TCTCTAGA
1 AAATCTTATCTCCTCTGAAGTTGCAGTAGAGCAGATTGAGGATAACAAAA-TT-TCTTCCCTAAA
** * ** * * *
26944020 GTTGCAGCAGAGC--ATGTCAAAACCACAAATCTTATCTC-CTTGAAGTTACAGTGGAGCAAATT
64 GTTGCAGTGGAGCAGAT-TGAAAATAACAAATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGATT
* ** * * * * * * **
26944082 GAATATGCGAATC-TTATTTCCCTGAAGTTACAATGGAAAAGATTAAAGCTACAAGTTAC
127 AAAGCTACAAACCTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG---C----TAC
* * * * * *
26944141 AAATCTTATCTCC-CTGAAGTTACAGTGGAGCAGATTGAAGATAGC-AAATCTTATATCTCTAAA
1 AAATCTTATCTCCTCTGAAGTTGCAGTAGAGCAGATTGAGGATAACAAAAT-TTCT-TCCCTAAA
* * * * * * * *
26944204 -TATGTAGTGGAGCAGATTGAATATGA-GAATCTTATTTC-CTTAAAGTTGCAGTGGAACAGATT
64 GT-TGCAGTGGAGCAGATTGAAAATAACAAATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGATT
*
26944266 AAAACTACAA
127 AAAGCTACAA
26944276 GTTACAAATC
Statistics
Matches: 803, Mismatches: 179, Indels: 98
0.74 0.17 0.09
Matches are distributed among these distances:
175 2 0.00
176 31 0.04
177 79 0.10
178 184 0.23
179 275 0.34
180 100 0.12
181 26 0.03
182 4 0.00
183 42 0.05
184 53 0.07
185 5 0.01
186 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (179 bp):
AAATCTTATCTCCTCTGAAGTTGCAGTAGAGCAGATTGAGGATAACAAAATTTCTTCCCTAAAGT
TGCAGTGGAGCAGATTGAAAATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAG
CTACAAACCTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTAC
Found at i:26943755 original size:313 final size:309
Alignment explanation
Indices: 26943064--26944077 Score: 969
Period size: 313 Copynumber: 3.2 Consensus size: 309
26943054 TAATCGTGGT
* * ** * ** *
26943064 AAATCTTATCTCTCTGAAGTTGCAGTGGAGCATTTTGAAGATAGCAAACCTTATCTCTCTGAAGT
1 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAACCTA-CAAATCTTATCTCTCTGAAGT
* * *
26943129 TGCAGTAGAGCAGATTAAAGCTACAAACT-TTATCTCTCTGAAGTTGCAATGGAGCAGGTT-AAA
65 TGCAGTAGAGCAGATTAAAGCTACAAA-TATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
* * * *
26943192 GATATCAAATCTTATCTCCTTGAAGTTGCAGTGAAGCATATTAAAGCGACAAATCCTATA-C-CT
129 -ATAACAAATCTTATCTCC-TGAAGTTGCAGTG-AGCAGATTAAAGCTACAAA-CCTTTATCTCT
* * * *
26943255 CTGAAGTTACAATGG-GTCGGATTAAATCAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGCA
190 CTGAAGTTACAGTGGAGTAGG-TT--A--AAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGA
* * * *
26943319 GTAGATTGAG--CCATAAATCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTAAAAATAGA
250 GCAGATTGAGATACA-AAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGATAGA
* * * *
26943378 AAATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATTAAACCTACAAATCTTATTTCTCTGAAGTT
1 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAACCTACAAATCTTATCTCTCTGAAGTT
* * * *
26943443 GCAGTAGAACAAATTCAAGTTACAAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAAT
66 GCAGTAGAGCAGATTAAAGCTACAAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAAT
* *
26943508 AACAAATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGCTACAAACCTTTATCTCCCTGA
131 AACAAATCTTATCTC-CTGAAGTTGCAGT-GAGCAGATTAAAGCTACAAACCTTTATCTCTCTGA
** * *
26943573 AGTTTTAGTGGAGTAGGTTAAAGCTACAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGA
194 AGTTACAGTGGAGTAGGTTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
* * * * * *
26943638 GGATAACAAAAT-TTCTTTCTCTAAAGTTGCAGTGGAGCAGATTGAAGATAGG
259 -GAT-ACAAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGATAGA
* * ** * *
26943690 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAGGTTTTTATCTCTTTGAAGT
1 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAACCTACA-AATCTTATCTCTCTGAAGT
* * * * * * **
26943755 TGCAATGGAGTAGATTAAAGCCACAAATATTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAGGA
65 TGCAGTAGAGCAGATTAAAGCTACAAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * * *
26943820 TAACAAATTTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAA-ATAACAAATC-TTATCTCTT
130 TAACAAATCTTATCT-CCTGAAGTTGCAGT-GAGCAGATT-AAAGCT-ACAAACCTTTATCTCTC
* ** * * * * *
26943883 TGAAGTTGCAGTTAAGCAGATTAAAGCTACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAAAT
191 TGAAGTTACAGTGGAGTAGGTTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * *
26943948 TAAAAATGAC-AAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTACA
256 T-GAGAT-ACAAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGATAGA
* * *
26944003 AAA-CTTATCTCTCTAGAGTTGCAGCAGAGCATG-TCAAAACC-ACAAATCTTATCTC-CTTGAA
1 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCA-GAT-TAAACCTACAAATCTTATCTCTC-TGAA
* *
26944064 GTTACAGTGGAGCA
63 GTTGCAGTAGAGCA
26944078 AATTGAATAT
Statistics
Matches: 574, Mismatches: 106, Indels: 43
0.79 0.15 0.06
Matches are distributed among these distances:
310 40 0.07
311 24 0.04
312 112 0.20
313 326 0.57
314 68 0.12
315 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (309 bp):
AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAACCTACAAATCTTATCTCTCTGAAGTT
GCAGTAGAGCAGATTAAAGCTACAAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAAT
AACAAATCTTATCTCCTGAAGTTGCAGTGAGCAGATTAAAGCTACAAACCTTTATCTCTCTGAAG
TTACAGTGGAGTAGGTTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAGA
TACAAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGATAGA
Found at i:26944234 original size:140 final size:140
Alignment explanation
Indices: 26943458--26944478 Score: 492
Period size: 134 Copynumber: 7.4 Consensus size: 140
26943448 AGAACAAATT
* * * * * *
26943458 CAAGTTACAAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAACAAATCTTATCTC
1 CAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATATA
* * ** * * ** * * * * **
26943523 TCTGAAGTTACAGTAGAGCAGATTAAAGCTACAAACCTTTATCTCCCTGAAGTTTTAGTGG---A
66 TCTAAAGATGTAGTGGAGCAGATTGAATATGCGAATC-TTATTTCCCTGAAGTTGCAGTGGAACA
* *
26943585 G--T-AGGTTA
130 GATTAAAGCTA
* * * * * * * *
26943593 -AAGCTACAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAGGATAACAAAAT-TTCTTT
1 CAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGC-AAATCTTATAT
* * * * * * * * *
26943656 CTCTAAAGTTGCAGTGGAGCAGATTGAAGATAG-GAAATCTTATCTCTCTAAAGTTGCAGTAGAG
65 ATCTAAAGATGTAGTGGAGCAGATTGAATAT-GCG-AATCTTATTTCCCTGAAGTTGCAGTGGAA
26943720 CAGATTAAAGCTA
128 CAGATTAAAGCTA
* * ** * * * * ** * * *
26943733 TAGGTT-----T-TTATCTCTTTGAAGTTGCAATGGAGTAGATTAAAGCCA-CAAATATTATCTC
1 CAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATATA
* * * * * * * *
26943791 CCTAAAGTTGTAGTGGAGCAGATTGAGGATA-ACAAATTTTATCTCCCTAAAGTTGCAGTGGAGC
66 TCTAAAGATGTAGTGGAGCAGATTGA--ATATGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAC
26943855 AGATT---G--A
129 AGATTAAAGCTA
* * ** * ** * * * * *
26943862 -AAATAACAAATCTTATCTCTTTGAAGTTGCAGTTAAGCAGATTAAAGCTA-CAAACCTTATCTC
1 CAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATATA
* * * * * * * * * * **
26943925 CCTAAAGTTGCAGTGGAGCAAATTAAAAATGACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTA
66 TCTAAAGATGTAGTGGAGCAGATTGAATATG-CGAATCTTATTTCCCTGAAGTTGCAGTGGAACA
26943990 GATTAAAGCTA
130 GATTAAAGCTA
* * ** * * * *
26944001 C-----A-AAA-CTTATCTCTCTAGAGTTGCAGCAGAGC--ATGTCAAAACCA-CAAATCTTATC
1 CAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAT-TGAAGA-TAGCAAATCTTATA
* * * ** * * *
26944056 T-CCTTGAAGTTACAGTGGAGCAAATTGAATATGCGAATCTTATTTCCCTGAAGTTACAATGGAA
64 TATC-TAAAGATGTAGTGGAGCAGATTGAATATGCGAATCTTATTTCCCTGAAGTTGCAGTGGAA
*
26944120 AAGATTAAAGCTA
128 CAGATTAAAGCTA
* * *
26944133 CAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATATC
1 CAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATATA
* * * *
26944198 TCTAAATATGTAGTGGAGCAGATTGAATATGAGAATCTTATTTCCTTAAAGTTGCAGTGGAACAG
66 TCTAAAGATGTAGTGGAGCAGATTGAATATGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAG
*
26944263 ATTAAAACTA
131 ATTAAAGCTA
*
26944273 CAAGTTACAAATCTATATAAGTTACAAATCTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGA
1 CAAGTTACAAATC--------TT----ATC--TC-C-CTAAAGTTGCAGTGGAGCAGATTGAAGA
* * * *
26944338 TAGCAAATCTTATCTATCTGAAGATGTAGTGGAGTAGATTGAAGATGCGAATCTTATTTCCCTGA
50 TAGCAAATCTTATATATCTAAAGATGTAGTGGAGCAGATTGAATATGCGAATCTTATTTCCCTGA
* *
26944403 AGTTGCAGTAGAACAGATTAAGGCTA
115 AGTTGCAGTGGAACAGATTAAAGCTA
* * *
26944429 CAAATTACAAATCTTATCTCCCTAAAGTTGTAGTGGAGTAGATTGAAGAT
1 CAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGAT
26944479 GCGAACCTTA
Statistics
Matches: 699, Mismatches: 129, Indels: 111
0.74 0.14 0.12
Matches are distributed among these distances:
128 2 0.00
129 1 0.00
131 3 0.00
132 44 0.06
133 63 0.09
134 258 0.37
135 38 0.05
136 3 0.00
137 4 0.01
138 3 0.00
139 24 0.03
140 118 0.17
141 7 0.01
142 2 0.00
144 3 0.00
148 4 0.01
152 3 0.00
154 2 0.00
155 1 0.00
156 116 0.17
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (140 bp):
CAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATATA
TCTAAAGATGTAGTGGAGCAGATTGAATATGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAG
ATTAAAGCTA
Found at i:26944403 original size:44 final size:44
Alignment explanation
Indices: 26944297--26944489 Score: 136
Period size: 44 Copynumber: 4.2 Consensus size: 44
26944287 ATATAAGTTA
* * * * *
26944297 CAAATC-TATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGATAG
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGAT-G
** *
26944341 CAAATCTTATCTATCTGAAGATGTAGTGGAGTAGATTGAAGATG
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGATG
* * * * ** * *
26944385 CGAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAGGCTACAAATTA
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATT---G--A-AGA-TG
*
26944436 CAAATCTTATCTCCCTAAAGTTGTAGTGGAGTAGATTGAAGATG
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGATG
* *
26944480 CGAACCTTAT
1 CAAATCTTAT
26944490 TTCTCCGAAG
Statistics
Matches: 113, Mismatches: 28, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
44 44 0.39
45 32 0.28
46 1 0.01
47 1 0.01
48 1 0.01
49 1 0.01
50 2 0.02
51 31 0.27
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGATG
Found at i:26944431 original size:156 final size:157
Alignment explanation
Indices: 26944134--26944442 Score: 458
Period size: 156 Copynumber: 2.0 Consensus size: 157
26944124 TTAAAGCTAC
* * *
26944134 AAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATATCT
1 AAGTTACAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTGAAGATAGCAAATCTTATATAT
* * * *
26944199 CTAAATATGTAGTGGAGCAGATTGAATATGAGAATCTTATTTCCTTAAAGTTGCAGTGGAACAGA
66 CTAAAGATGTAGTGGAGCAGATTGAAGATGAGAATCTTATTTCCCTAAAGTTGCAGTAGAACAGA
*
26944264 TTAAAACTACAAGTTACAAATCTATAT
131 TTAAAACTACAAATTACAAATCTATAT
* * *
26944291 AAGTTACAAATC-TATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTAT
1 AAGTTACAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTGAAGATAGCAAATCTTATATAT
* * * *
26944355 CTGAAGATGTAGTGGAGTAGATTGAAGATGCGAATCTTATTTCCCTGAAGTTGCAGTAGAACAGA
66 CTAAAGATGTAGTGGAGCAGATTGAAGATGAGAATCTTATTTCCCTAAAGTTGCAGTAGAACAGA
**
26944420 TTAAGGCTACAAATTACAAATCT
131 TTAAAACTACAAATTACAAATCT
26944443 TATCTCCCTA
Statistics
Matches: 135, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
156 123 0.91
157 12 0.09
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (157 bp):
AAGTTACAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTGAAGATAGCAAATCTTATATAT
CTAAAGATGTAGTGGAGCAGATTGAAGATGAGAATCTTATTTCCCTAAAGTTGCAGTAGAACAGA
TTAAAACTACAAATTACAAATCTATAT
Found at i:26944463 original size:95 final size:95
Alignment explanation
Indices: 26944341--26944539 Score: 292
Period size: 95 Copynumber: 2.1 Consensus size: 95
26944331 TTGAAGATAG
* * *
26944341 CAAATCTTATCTATCTGAAGATGTAGTGGAGTAGATTGAAGATGCGAATCTTATTTC-CCTGAAG
1 CAAATCTTATCTACCTAAAGATGTAGTGGAGTAGATTGAAGATGCGAACCTTATTTCTCC-GAAG
* *
26944405 TTGCAGTAGAACAGATTAAGGCTACAAATTA
65 TCGCAGTAGAACAGATTAAGGCCACAAATTA
* *
26944436 CAAATCTTATCTCCCTAAAGTTGTAGTGGAGTAGATTGAAGATGCGAACCTTATTTCTCCGAAGT
1 CAAATCTTATCTACCTAAAGATGTAGTGGAGTAGATTGAAGATGCGAACCTTATTTCTCCGAAGT
* *
26944501 CGCAGTGGAACAGATTAAGGCCACAAGTTA
66 CGCAGTAGAACAGATTAAGGCCACAAATTA
*
26944531 CAACTCTTA
1 CAAATCTTA
26944540 AGTTGCAAAT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
95 91 0.98
96 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (95 bp):
CAAATCTTATCTACCTAAAGATGTAGTGGAGTAGATTGAAGATGCGAACCTTATTTCTCCGAAGT
CGCAGTAGAACAGATTAAGGCCACAAATTA
Found at i:26945226 original size:23 final size:22
Alignment explanation
Indices: 26945172--26945226 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 22
26945162 TCAAAACCCT
*
26945172 AAAAAATAAAAAAGAGAAATCG
1 AAAAAAAAAAAAAGAGAAATCG
** *
26945194 AAATCGAAAAAAAAGAGTAATCG
1 AAA-AAAAAAAAAAGAGAAATCG
*
26945217 AATAAAAAAA
1 AAAAAAAAAA
26945227 CTCTAAAAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.71, C:0.05, G:0.13, T:0.11
Consensus pattern (22 bp):
AAAAAAAAAAAAAGAGAAATCG
Found at i:26946244 original size:3 final size:3
Alignment explanation
Indices: 26946226--26946335 Score: 100
Period size: 3 Copynumber: 36.7 Consensus size: 3
26946216 NNNNNNNTAA
26946226 ATT ATTT ATT -TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
26946271 ATT ATT ATC ATT -TT AATT ATT ATT -CT ATT ATG AAT ATT AGT ATC
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
26946315 ATG ATTT ATT ATT ACT ATT AT
1 ATT A-TT ATT ATT ATT ATT AT
26946336 ACTTTTATAT
Statistics
Matches: 86, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
2 5 0.06
3 74 0.86
4 7 0.08
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:26948523 original size:9 final size:9
Alignment explanation
Indices: 26948509--26948546 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
26948499 TTTAATTAGA
26948509 AAATTAATT
1 AAATTAATT
26948518 AAATTAATT
1 AAATTAATT
**
26948527 TGATTAATT
1 AAATTAATT
26948536 AAATTAATT
1 AAATTAATT
26948545 AA
1 AA
26948547 TATTTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (9 bp):
AAATTAATT
Found at i:26948535 original size:13 final size:13
Alignment explanation
Indices: 26948509--26948547 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
26948499 TTTAATTAGA
26948509 AAATTAATTAAATT
1 AAATTAATT-AATT
* *
26948523 AATTTGATTAATT
1 AAATTAATTAATT
26948536 AAATTAATTAAT
1 AAATTAATTAAT
26948548 ATTTATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 14 0.67
14 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (13 bp):
AAATTAATTAATT
Found at i:26949386 original size:30 final size:29
Alignment explanation
Indices: 26949352--26949408 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
26949342 AAATTTAAGT
26949352 TAATAAAATGATA-AAATTACATTTTAACTC
1 TAATAAAAT-ATATAAATTA-ATTTTAACTC
*
26949382 TAATAAAATATATAATTTAATTTTAAC
1 TAATAAAATATATAAATTAATTTTAAC
26949409 CCCCAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (29 bp):
TAATAAAATATATAAATTAATTTTAACTC
Found at i:26951409 original size:19 final size:19
Alignment explanation
Indices: 26951385--26951483 Score: 71
Period size: 19 Copynumber: 5.2 Consensus size: 19
26951375 CTACATTTAT
26951385 TAAAAATTAG-AAAAAAATA
1 TAAAAA-TAGTAAAAAAATA
26951404 TAAAAATAGTAAAAAAATA
1 TAAAAATAGTAAAAAAATA
** * *
26951423 T-AAAATTTTATAACAATCA
1 TAAAAATAGTAAAAAAAT-A
* *
26951442 TAAAAA-ATTATAAAATATA
1 TAAAAATAGTA-AAAAAATA
*
26951461 TAGAAATA-TAAAAAAATTA
1 TAAAAATAGTAAAAAAA-TA
26951480 TAAA
1 TAAA
26951484 TTTTATAAAG
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
18 20 0.32
19 34 0.54
20 9 0.14
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (19 bp):
TAAAAATAGTAAAAAAATA
Found at i:26951418 original size:29 final size:27
Alignment explanation
Indices: 26951386--26951475 Score: 81
Period size: 29 Copynumber: 3.2 Consensus size: 27
26951376 TACATTTATT
*
26951386 AAAAATTAGAAAAAAATATAAAAATAGTA
1 AAAAATTA-AAAAATATATAAAAATA-TA
* * * *
26951415 AAAAAATATAAAATTTTATAACAATCATA
1 AAAAATTA-AAAAATATATAAAAAT-ATA
* *
26951444 AAAAATTATAAAATATATAGAAATATA
1 AAAAATTAAAAAATATATAAAAATATA
26951471 AAAAA
1 AAAAA
26951476 ATTATAAATT
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
27 8 0.17
28 11 0.23
29 28 0.58
30 1 0.02
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.26
Consensus pattern (27 bp):
AAAAATTAAAAAATATATAAAAATATA
Found at i:26951427 original size:28 final size:27
Alignment explanation
Indices: 26951396--26951492 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 27
26951386 AAAAATTAGA
*
26951396 AAAAAATATAAAAATAGTAAAAAAATAT
1 AAAATATATAAAAATA-TAAAAAAATAT
* * *
26951424 AAAATTTTATAACAATCATAAAAAATTAT
1 AAAA-TATATAAAAAT-ATAAAAAAATAT
*
26951453 AAAATATATAGAAATATAAAAAAATTAT
1 AAAATATATAAAAATATAAAAAAA-TAT
* *
26951481 AAATTTTATAAA
1 AAAATATATAAA
26951493 GTCGTAAGAA
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
27 8 0.15
28 24 0.44
29 22 0.40
30 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (27 bp):
AAAATATATAAAAATATAAAAAAATAT
Found at i:26951454 original size:10 final size:10
Alignment explanation
Indices: 26951381--26951483 Score: 56
Period size: 10 Copynumber: 10.7 Consensus size: 10
26951371 GCCCCTACAT
*
26951381 TTATTAAAAA
1 TTATAAAAAA
*
26951391 TTAGAAAAAA
1 TTATAAAAAA
*
26951401 ATAT-AAAAA
1 TTATAAAAAA
26951410 -TAGTAAAAAA
1 TTA-TAAAAAA
* **
26951420 ATATAAAATT
1 TTATAAAAAA
*
26951430 TTAT-AACAA
1 TTATAAAAAA
*
26951439 TCATAAAAAA
1 TTATAAAAAA
*
26951449 TTATAAAATA
1 TTATAAAAAA
*
26951459 -TAT-AGAAA
1 TTATAAAAAA
26951467 -TATAAAAAAA
1 TTAT-AAAAAA
26951477 TTATAAA
1 TTATAAA
26951484 TTTTATAAAG
Statistics
Matches: 69, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
8 8 0.12
9 14 0.20
10 42 0.61
11 5 0.07
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:26951504 original size:28 final size:27
Alignment explanation
Indices: 26951413--26951509 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 27
26951403 ATAAAAATAG
*
26951413 TAAAAAAATATAAAATTTTATAACAATCA
1 TAAAAAATTAT-AAATTTTATAA-AATCA
* *
26951442 TAAAAAATTATAAAATATATAGAAAT-A
1 TAAAAAATTATAAATTTTATA-AAATCA
* *
26951469 TAAAAAAATTATAAATTTTATAAAGTCG
1 T-AAAAAATTATAAATTTTATAAAATCA
26951497 TAAGAAAATTATA
1 TAA-AAAATTATA
26951510 CAAAATGTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
27 7 0.12
28 39 0.68
29 11 0.19
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (27 bp):
TAAAAAATTATAAATTTTATAAAATCA
Found at i:26951550 original size:20 final size:20
Alignment explanation
Indices: 26951494--26951553 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
26951484 TTTTATAAAG
*
26951494 TCGTAAGAAAATTATACAAAA
1 TCGTAAAAAAATTATA-AAAA
* **
26951515 T-GTAAAGAAA-TATAAATT
1 TCGTAAAAAAATTATAAAAA
26951533 TCGTAAAAAAATTATAAAAA
1 TCGTAAAAAAATTATAAAAA
26951553 T
1 T
26951554 TATCGTATCA
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
18 3 0.10
19 12 0.40
20 14 0.47
21 1 0.03
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.28
Consensus pattern (20 bp):
TCGTAAAAAAATTATAAAAA
Found at i:26951871 original size:90 final size:90
Alignment explanation
Indices: 26951744--26951928 Score: 239
Period size: 90 Copynumber: 2.0 Consensus size: 90
26951734 GCTTAGTTAC
* *
26951744 TTTTTTGAAAATTTTTGAAGGTCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAATTGATTG-A
1 TTTTTTGAAAAATTTTGAAGGTCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAATTGAGTGAA
*
26951808 AAAAAAATAGGGGCTTAATTGCTTCT
66 AAAAAAAGAGGGGCTTAATTGCTT-T
* * * * * *
26951834 TTTTTTGAAGAAATTTT-AGGGTCTTTTTGATGTATTTTGAAAGTTCATGTGCTCAATTGAGTGC
1 TTTTTTGAA-AAATTTTGAAGGTCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAATTGAGTG-
26951898 AAAAAAAAAAGAGGGGCTTAATTGCTTT
64 -AAAAAAAAAGAGGGGCTTAATTGCTTT
26951926 TTT
1 TTT
26951929 AAAAAAAAAC
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
90 48 0.59
91 6 0.07
92 4 0.05
93 24 0.29
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.42
Consensus pattern (90 bp):
TTTTTTGAAAAATTTTGAAGGTCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAATTGAGTGAA
AAAAAAAGAGGGGCTTAATTGCTTT
Found at i:26968994 original size:8 final size:8
Alignment explanation
Indices: 26968981--26969009 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
26968971 ACTAAGGTAC
26968981 AATAATCT
1 AATAATCT
26968989 AATAATCT
1 AATAATCT
26968997 AATAATC-
1 AATAATCT
26969004 AATAAT
1 AATAAT
26969010 AATAATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (8 bp):
AATAATCT
Found at i:26969346 original size:16 final size:16
Alignment explanation
Indices: 26969325--26969355 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26969315 TTCACTATTA
*
26969325 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
26969341 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
26969356 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:26970970 original size:20 final size:20
Alignment explanation
Indices: 26970945--26970998 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
26970935 ATTCCAAAAA
26970945 TAATATTAAATTTATTAAT-T
1 TAATATTAAATTTATT-ATCT
* *
26970965 TAATATTAAAGTGATTATCT
1 TAATATTAAATTTATTATCT
26970985 TAATATTAAATTTA
1 TAATATTAAATTTA
26970999 ATTTAATGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.07
20 27 0.93
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (20 bp):
TAATATTAAATTTATTATCT
Found at i:26974474 original size:27 final size:27
Alignment explanation
Indices: 26974434--26974659 Score: 269
Period size: 27 Copynumber: 8.4 Consensus size: 27
26974424 GTAATGGGCC
*
26974434 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * *
26974461 TAAAATGACTGAAATATCCTTGAAGAG
1 TAAAATGACTGAAATACCCTCGAAGGG
*
26974488 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
** * **
26974515 TAAAATGACCAAAATACTCTTAAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
26974542 -AAAATGA-TCGAAATACCCCCGAAAGG
1 TAAAATGACT-GAAATACCCTCGAAGGG
26974568 TAAAATGACTGAAATACCC-CTGAAGGG
1 TAAAATGACTGAAATACCCTC-GAAGGG
*
26974595 TAAAATGACTAAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * *
26974622 TAAAATGACCGAAATACCCCCGAAGAG
1 TAAAATGACTGAAATACCCTCGAAGGG
26974649 TAAAATGACTG
1 TAAAATGACTG
26974660 TTATACCTCT
Statistics
Matches: 168, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
26 19 0.11
27 147 0.88
28 2 0.01
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.18
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCGAAGGG
Found at i:26974516 original size:54 final size:54
Alignment explanation
Indices: 26974434--26974657 Score: 297
Period size: 54 Copynumber: 4.2 Consensus size: 54
26974424 GTAATGGGCC
* * *
26974434 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAATATCCTTGAAGAG
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCTGAAGAG
* * * *
26974488 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAAATACTCTTAAAG-G
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCTGAAGAG
* * * * * *
26974541 GAAAATGATCGAAATACCCCCGAAAGGTAAAATGACTGAAATACCCCTGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCTGAAGAG
** *
26974595 TAAAATGACTAAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCCGAAGAG
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCTGAAGAG
26974649 TAAAATGAC
1 TAAAATGAC
26974658 TGTTATACCT
Statistics
Matches: 146, Mismatches: 23, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
53 44 0.30
54 102 0.70
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.17
Consensus pattern (54 bp):
TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCCTGAAGAG
Found at i:26974621 original size:107 final size:107
Alignment explanation
Indices: 26974435--26974638 Score: 327
Period size: 107 Copynumber: 1.9 Consensus size: 107
26974425 TAATGGGCCT
* * * * *
26974435 AAAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAATATCCTTGAAGAGTAAAATGACCGA
1 AAAATGACCGAAATACCCCCGAAAGGTAAAATGACTGAAATACCCCTGAAGAGTAAAATGACCAA
26974500 AATACCCTCGAAGGGTAAAATGACCAAAATACTCTTAAAGGG
66 AATACCCTCGAAGGGTAAAATGACCAAAATACTCTTAAAGGG
* * *
26974542 AAAATGATCGAAATACCCCCGAAAGGTAAAATGACTGAAATACCCCTGAAGGGTAAAATGACTAA
1 AAAATGACCGAAATACCCCCGAAAGGTAAAATGACTGAAATACCCCTGAAGAGTAAAATGACCAA
*
26974607 AATACCCTCGAAGGGTAAAATGACCGAAATAC
66 AATACCCTCGAAGGGTAAAATGACCAAAATAC
26974639 CCCCGAAGAG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
107 88 1.00
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.18
Consensus pattern (107 bp):
AAAATGACCGAAATACCCCCGAAAGGTAAAATGACTGAAATACCCCTGAAGAGTAAAATGACCAA
AATACCCTCGAAGGGTAAAATGACCAAAATACTCTTAAAGGG
Found at i:26974864 original size:26 final size:26
Alignment explanation
Indices: 26974832--26974908 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
26974822 TTGCCACATA
*
26974832 TACTGTTATTGGCAGCTTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
* *
26974858 TACTGTTACTGGCAGCTTTGTTGCAT
1 TACTGTTACTGGCAGCTTTGCTGCGT
* * *
26974884 CATTATTACTGGCAGCTTTGCTGCG
1 TACTGTTACTGGCAGCTTTGCTGCG
26974909 ATATTGGTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.14, C:0.21, G:0.25, T:0.40
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCGT
Found at i:26975056 original size:28 final size:28
Alignment explanation
Indices: 26975016--26975135 Score: 143
Period size: 28 Copynumber: 4.3 Consensus size: 28
26975006 TGCATTGTAT
26975016 TGTTACTGTAATGGGCTAAGGCCCACAC
1 TGTTACTGTAATGGGCTAAGGCCCACAC
26975044 TGTTACTGTAATGGGCTAAGGCCCACAC
1 TGTTACTGTAATGGGCTAAGGCCCACAC
* * *
26975072 TGTTATTATATTGGGCTAAGGCCCACAC
1 TGTTACTGTAATGGGCTAAGGCCCACAC
* ** * *
26975100 CGTTGTTGT-ATAGGGCTCAGGCCCAGAC
1 TGTTACTGTAAT-GGGCTAAGGCCCACAC
*
26975128 TGCTACTG
1 TGTTACTG
26975136 CATGTTGTAA
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 1 0.01
28 77 0.99
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.28
Consensus pattern (28 bp):
TGTTACTGTAATGGGCTAAGGCCCACAC
Found at i:26984689 original size:22 final size:21
Alignment explanation
Indices: 26984614--26984686 Score: 94
Period size: 21 Copynumber: 3.4 Consensus size: 21
26984604 CAAAACAACA
*
26984614 GTTTCTCCCCTCGTTCTTGTTG
1 GTTTCT-CCCTCGTTCTTGCTG
*
26984636 GTTTCTCCCTTGTTCTTGCTG
1 GTTTCTCCCTCGTTCTTGCTG
*
26984657 GTTTGTCCCTCGTT-TCTGCTG
1 GTTTCTCCCTCGTTCT-TGCTG
26984678 GTTTCTCCC
1 GTTTCTCCC
26984687 CTCTTTTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
20 1 0.02
21 38 0.84
22 6 0.13
ACGTcount: A:0.00, C:0.32, G:0.19, T:0.49
Consensus pattern (21 bp):
GTTTCTCCCTCGTTCTTGCTG
Found at i:26988549 original size:60 final size:62
Alignment explanation
Indices: 26988437--26988557 Score: 185
Period size: 60 Copynumber: 2.0 Consensus size: 62
26988427 GCTTTGATCA
* *
26988437 GAGGAGGGCACGGGGTTTGGGACTTTGATCGGTGGAAGAGGATAAATGGGAAT-GGGAAATGG
1 GAGGAGGGCACGGGGTTTGGGA-TTTGATCGGTGGAAGAGGAGAAATCGGAATGGGGAAATGG
26988499 GAGGAGGGCACGGGGTTTGGG-TTTGATCGGTGGAAGAAGG-GAAATCGGAATGGGGAAAT
1 GAGGAGGGCACGGGGTTTGGGATTTGATCGGTGGAAG-AGGAGAAATCGGAATGGGGAAAT
26988558 TGCACTGTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
60 24 0.44
61 10 0.18
62 21 0.38
ACGTcount: A:0.27, C:0.07, G:0.47, T:0.19
Consensus pattern (62 bp):
GAGGAGGGCACGGGGTTTGGGATTTGATCGGTGGAAGAGGAGAAATCGGAATGGGGAAATGG
Found at i:26988680 original size:23 final size:23
Alignment explanation
Indices: 26988644--26988690 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26988634 TATTTTGATA
*
26988644 AAAAGCGTCACTAAAAATCAAGC
1 AAAAGCGCCACTAAAAATCAAGC
* * *
26988667 AAAAGCGCCGCTAAAGATCGAGC
1 AAAAGCGCCACTAAAAATCAAGC
26988690 A
1 A
26988691 GTAGCGGCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (23 bp):
AAAAGCGCCACTAAAAATCAAGC
Found at i:26989379 original size:19 final size:19
Alignment explanation
Indices: 26989352--26989417 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
26989342 GGGGTTATGC
*
26989352 TTTACGGGTTATAGGGGGA
1 TTTAGGGGTTATAGGGGGA
*
26989371 TTTAGGGGTTATGATCGGGG-
1 TTTAGGGGTTAT-A-GGGGGA
26989391 -TTAGGGG-T-TAGGGGGA
1 TTTAGGGGTTATAGGGGGA
26989407 TTTAGGGGTTA
1 TTTAGGGGTTA
26989418 GGGATTTGGG
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
15 4 0.11
16 1 0.03
17 8 0.21
18 2 0.05
19 18 0.47
20 1 0.03
21 4 0.11
ACGTcount: A:0.18, C:0.03, G:0.45, T:0.33
Consensus pattern (19 bp):
TTTAGGGGTTATAGGGGGA
Found at i:26989413 original size:17 final size:17
Alignment explanation
Indices: 26989363--26989420 Score: 66
Period size: 17 Copynumber: 3.3 Consensus size: 17
26989353 TTACGGGTTA
26989363 TAGGGGGATTTAGGGGT
1 TAGGGGGATTTAGGGGT
26989380 TATGATCGGGG--TTAGGGGT
1 TA-G---GGGGATTTAGGGGT
26989399 TAGGGGGATTTAGGGGT
1 TAGGGGGATTTAGGGGT
26989416 TAGGG
1 TAGGG
26989421 ATTTGGGGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
15 4 0.11
17 15 0.43
18 2 0.06
19 10 0.29
21 4 0.11
ACGTcount: A:0.17, C:0.02, G:0.52, T:0.29
Consensus pattern (17 bp):
TAGGGGGATTTAGGGGT
Found at i:26989421 original size:15 final size:15
Alignment explanation
Indices: 26989391--26989435 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
26989381 ATGATCGGGG
26989391 TTAGGGGTTAGGGGGAT
1 TTAGGGGTTA--GGGAT
26989408 TTAGGGGTTAGGGAT
1 TTAGGGGTTAGGGAT
26989423 TT-GGGGTTTAGGG
1 TTAGGGG-TTAGGG
26989436 TTTCAACGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.15
15 13 0.48
17 10 0.37
ACGTcount: A:0.16, C:0.00, G:0.51, T:0.33
Consensus pattern (15 bp):
TTAGGGGTTAGGGAT
Found at i:26989428 original size:24 final size:22
Alignment explanation
Indices: 26989387--26989435 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
26989377 GGTTATGATC
*
26989387 GGGGTTAGGGGTTAGGGGGATTTA
1 GGGGTTAGGGATTA-GGGG-TTTA
*
26989411 GGGGTTAGGGATTTGGGGTTTA
1 GGGGTTAGGGATTAGGGGTTTA
26989433 GGG
1 GGG
26989436 TTTCAACGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
23 4 0.17
24 12 0.52
ACGTcount: A:0.14, C:0.00, G:0.55, T:0.31
Consensus pattern (22 bp):
GGGGTTAGGGATTAGGGGTTTA
Found at i:26996172 original size:21 final size:21
Alignment explanation
Indices: 26996148--26996199 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
26996138 CACCATTGTT
*
26996148 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACCACTACAGTA
*
26996169 TCTAATATCACCACTACAGTA
1 TCTAATCTCACCACTACAGTA
*
26996190 ACTAATCTCA
1 TCTAATCTCA
26996200 ACGCCACCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.31, G:0.06, T:0.29
Consensus pattern (21 bp):
TCTAATCTCACCACTACAGTA
Found at i:27003826 original size:23 final size:22
Alignment explanation
Indices: 27003783--27003826 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
27003773 TTCACTAGTC
**
27003783 CAATACAGTACAGTTAGATGTA
1 CAATACAGTACAAATAGATGTA
*
27003805 CAATACAGGTACAAATATATGT
1 CAATACA-GTACAAATAGATGT
27003827 CCGACCAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (22 bp):
CAATACAGTACAAATAGATGTA
Found at i:27010055 original size:35 final size:35
Alignment explanation
Indices: 27010016--27010088 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
27010006 TGCGCATACT
*
27010016 TTTGTTGCAACATAGAACCTGAATTTGTGCATGTA
1 TTTGTTGCAAAATAGAACCTGAATTTGTGCATGTA
27010051 TTTGTTGCAAAATAGAACCTGAATTTGTGCATGTA
1 TTTGTTGCAAAATAGAACCTGAATTTGTGCATGTA
27010086 TTT
1 TTT
27010089 TGTGAAGTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (35 bp):
TTTGTTGCAAAATAGAACCTGAATTTGTGCATGTA
Found at i:27012615 original size:29 final size:30
Alignment explanation
Indices: 27012583--27012648 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
27012573 GGTTTTGGAC
27012583 AAAATAAATTAAGG-TTTA-GATATTTTAAA
1 AAAATAAATT-AGGATTTAGGATATTTTAAA
*
27012612 AAAATAAATTAGGATTTAGGGATTTTTTAAA
1 AAAATAAATTAGGATTTA-GGATATTTTAAA
27012643 ATAAAT
1 A-AAAT
27012649 TTATGTTTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 3 0.09
29 14 0.44
31 11 0.34
32 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (30 bp):
AAAATAAATTAGGATTTAGGATATTTTAAA
Found at i:27012657 original size:28 final size:27
Alignment explanation
Indices: 27012612--27012664 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
27012602 ATATTTTAAA
27012612 AAAATAAATTAGGATTTAGGGATTTTTT
1 AAAATAAATTAGGATTTAGGG-TTTTTT
*
27012640 AAAATAAATTTATG-TTTAGGGTTTT
1 AAAATAAA-TTAGGATTTAGGGTTTT
27012665 AGAGGTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 15 0.65
29 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (27 bp):
AAAATAAATTAGGATTTAGGGTTTTTT
Found at i:27012948 original size:124 final size:125
Alignment explanation
Indices: 27012736--27013407 Score: 811
Period size: 126 Copynumber: 5.4 Consensus size: 125
27012726 TTTTTATTCA
* * * * *
27012736 ATCAGCAAAAGTACTAAAAAAAGCTTCCAGC-TGGACACTATTTTTCTACAATAGTTTCTAAAAA
1 ATCAGCAAAAGTACTGAAAAAA-CTCCCA-CATGGACGCTATTTTTCTACAGTAGTTTCTGAAAA
* *
27012800 AATAATTTTGAGAAGATTGTTTTAAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
64 AATAATTTTGAGAAGATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACT
* * * * * *
27012862 GTCAACAAAAGTAGTGAAAAAAATCCCACCTAGG-CGCTCTTTTTCTACAGTTA-TTTCTG-AAA
1 ATCAGCAAAAGTACTGAAAAAACTCCCACAT-GGACGCTATTTTTCTACAG-TAGTTTCTGAAAA
* *
27012924 AATAATTTTGAGAAGATGGTTTTAAAAAAATAGGGTCAAAAATGCTTTAAGCAGGATGCACT
64 AATAATTTTGAGAAGATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACT
* *
27012986 TTCAGCAAAAGTACTGGAAAAAGCTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAA
1 ATCAGCAAAAGTACT-GAAAAAACTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAA
* * *
27013051 ATAATTTTGAGAATATGGTTCT-AAAAAA-AGTGTCAAAAACGCTTCAAGCAGGATGCACT
65 ATAATTTTGAGAAGATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACT
* * * * *
27013110 ATCAGCAAAAGTACTGAAAAAGCTCCC-CCTGGATGCTATTTTTTTACGGTAGTTTCTGAAAAAA
1 ATCAGCAAAAGTACTGAAAAAACTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAA
* * * * *
27013174 TAATTTTGAAAAGATGGTTCTAAGAAAATAGTGTAAAAAATGCTTCAAACAGGATGCACT
66 TAATTTTGAGAAGATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACT
* * * * **
27013234 GTTAGCAAAAATACT-AAAACAAGCTCCAAGTTGGACGCTATTTTTCTACAGTAGTTTCTGAAAA
1 ATCAGCAAAAGTACTGAAAA-AA-CTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAA
* * *
27013298 AATAATTTTGAAAAGATGGTTTTGAAAAAATAGTGTCAAAAATGCTTCAAACAGGATGCACT
64 AATAATTTTGAGAAGATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACT
* * * ** *
27013360 ATTAGTAAAAGTATTGAAAAAAGCTCCCACATGGGTGCTCTTTTTCTA
1 ATCAGCAAAAGTACTGAAAAAA-CTCCCACATGGACGCTATTTTTCTA
27013408 TAATACATCA
Statistics
Matches: 472, Mismatches: 61, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
122 52 0.11
123 21 0.04
124 161 0.34
125 67 0.14
126 167 0.35
127 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (125 bp):
ATCAGCAAAAGTACTGAAAAAACTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAA
TAATTTTGAGAAGATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACT
Found at i:27013404 original size:126 final size:125
Alignment explanation
Indices: 27012739--27013407 Score: 818
Period size: 124 Copynumber: 5.4 Consensus size: 125
27012729 TTATTCAATC
* * * * *
27012739 AGCAAAAGTACTAAAAAAAGCTTCCAGC-TGGACACTATTTTTCTACAATAGTTTCTAAAAAAAT
1 AGCAAAAGTACTGAAAAAAGCTCCCA-CATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAAT
* * * *
27012803 AATTTTGAGAAGATTGTTTTAAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
65 AATTTTGAGAAGATGGTTTT-AAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACTATT
* * * * *
27012865 AACAAAAGTAGTGAAAAAA-ATCCCACCTAGG-CGCTCTTTTTCTACAGTTA-TTTCTG-AAAAA
1 AGCAAAAGTACTGAAAAAAGCTCCCACAT-GGACGCTATTTTTCTACAG-TAGTTTCTGAAAAAA
* *
27012926 TAATTTTGAGAAGATGGTTTTAAAAAAATAGGGTCAAAAATGCTTTAAGCAGGATGCACT-TT
64 TAATTTTGAGAAGATGGTTTT-AAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACTATT
*
27012988 CAGCAAAAGTACTGGAAAAAGCTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAAT
1 -AGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAAT
* * * *
27013053 AATTTTGAGAATATGGTTCTAAAAAA-AGTGTCAAAAACGCTTCAAGCAGGATGCACTATC
65 AATTTTGAGAAGATGGTTTTAAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACTATT
* * * *
27013113 AGCAAAAGTACTG-AAAAAGCTCCC-CCTGGATGCTATTTTTTTACGGTAGTTTCTGAAAAAATA
1 AGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAATA
* * * * *
27013176 ATTTTGAAAAGATGGTTCTAAGAAAATAGTGTAAAAAATGCTTCAAACAGGATGCACTGTT
66 ATTTTGAGAAGATGGTTTTAA-AAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACTATT
* * **
27013237 AGCAAAAATACT-AAAACAAGCTCCAAGTTGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAAT
1 AGCAAAAGTACTGAAAA-AAGCTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAAT
* *
27013301 AATTTTGAAAAGATGGTTTTGAAAAAATAGTGTCAAAAATGCTTCAAACAGGATGCACTATT
65 AATTTTGAGAAGATGGTTTT-AAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACTATT
* * ** *
27013363 AGTAAAAGTATTGAAAAAAGCTCCCACATGGGTGCTCTTTTTCTA
1 AGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTATTTTTCTA
27013408 TAATACATCA
Statistics
Matches: 471, Mismatches: 56, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
122 54 0.11
123 16 0.03
124 166 0.35
125 65 0.14
126 164 0.35
127 6 0.01
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (125 bp):
AGCAAAAGTACTGAAAAAAGCTCCCACATGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAATA
ATTTTGAGAAGATGGTTTTAAAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACTATT
Found at i:27013509 original size:25 final size:25
Alignment explanation
Indices: 27013480--27013551 Score: 101
Period size: 25 Copynumber: 2.9 Consensus size: 25
27013470 TTATAGCAAG
27013480 AGAAATT-AGAGAAGTTCAGAAGAAT
1 AGAAATTGA-AGAAGTTCAGAAGAAT
*
27013505 AGAAATTGAAGGAGTTCAGAAGAAT
1 AGAAATTGAAGAAGTTCAGAAGAAT
* *
27013530 ATAAATTGAAGAAGTTGAGAAG
1 AGAAATTGAAGAAGTTCAGAAG
27013552 GTATAGGTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
25 41 0.98
26 1 0.02
ACGTcount: A:0.50, C:0.03, G:0.26, T:0.21
Consensus pattern (25 bp):
AGAAATTGAAGAAGTTCAGAAGAAT
Found at i:27015462 original size:21 final size:22
Alignment explanation
Indices: 27015438--27015484 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
27015428 TGTTTAGAAC
*
27015438 AATAATA-TGTTAT-AATATTAA
1 AATAATATTGTAATAAAT-TTAA
27015459 AATAATATTGTAATAAATTTAA
1 AATAATATTGTAATAAATTTAA
27015481 AATA
1 AATA
27015485 TACTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 13 0.57
23 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.40
Consensus pattern (22 bp):
AATAATATTGTAATAAATTTAA
Found at i:27021657 original size:17 final size:18
Alignment explanation
Indices: 27021635--27021669 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
27021625 ATCTGGGTCA
27021635 TGTGGG-CCACAAGGGCG
1 TGTGGGCCCACAAGGGCG
*
27021652 TGTGGGCCCACACGGGCG
1 TGTGGGCCCACAAGGGCG
27021670 AACATCATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.14, C:0.29, G:0.46, T:0.11
Consensus pattern (18 bp):
TGTGGGCCCACAAGGGCG
Found at i:27022657 original size:18 final size:18
Alignment explanation
Indices: 27022628--27022675 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
27022618 AAATAAATGT
*
27022628 TTTGAAATTGAATAACGA
1 TTTGAAAATGAATAACGA
* * *
27022646 TTTGTAAATGAATAATGT
1 TTTGAAAATGAATAACGA
27022664 TTTGAAAATGAA
1 TTTGAAAATGAA
27022676 CGACACTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.02, G:0.17, T:0.38
Consensus pattern (18 bp):
TTTGAAAATGAATAACGA
Found at i:27023349 original size:8 final size:8
Alignment explanation
Indices: 27023338--27023367 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
27023328 AAAAAACCTA
27023338 AAAATATT
1 AAAATATT
27023346 AAAATATT
1 AAAATATT
27023354 AAAATATT
1 AAAATATT
27023362 AAAATA
1 AAAATA
27023368 AATGTTTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATATT
Found at i:27023723 original size:17 final size:17
Alignment explanation
Indices: 27023684--27023716 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
27023674 CGAGTCTTAT
27023684 TTTTTTGCCCAAGCCTA
1 TTTTTTGCCCAAGCCTA
27023701 TTTTTTGCCCAAGCCT
1 TTTTTTGCCCAAGCCT
27023717 TTCTTTTCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.30, G:0.12, T:0.42
Consensus pattern (17 bp):
TTTTTTGCCCAAGCCTA
Found at i:27024155 original size:17 final size:17
Alignment explanation
Indices: 27024116--27024148 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
27024106 CGAGTCTTAT
27024116 TTTTTTGCCCAAGCCTA
1 TTTTTTGCCCAAGCCTA
27024133 TTTTTTGCCCAAGCCT
1 TTTTTTGCCCAAGCCT
27024149 TTCTTTTCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.30, G:0.12, T:0.42
Consensus pattern (17 bp):
TTTTTTGCCCAAGCCTA
Found at i:27024188 original size:432 final size:433
Alignment explanation
Indices: 27023375--27024239 Score: 1723
Period size: 432 Copynumber: 2.0 Consensus size: 433
27023365 ATAAATGTTT
27023375 CCCAAAAAATTGAAAATAAATATATATGTATACTTAAATAACAGTAAGATAGGTGCAATTTAATA
1 CCCAAAAAATTGAAAATAAATATATATGTATACTTAAATAACAGTAAGATAGGTGCAATTTAATA
27023440 AGCAAATGCCTCTAAAATAGTAACAAAATTAACAATAAAATAAAAGTTATACAATATCCAAACAA
66 AGCAAATGCCTCTAAAATAGTAACAAAATTAACAATAAAATAAAAGTTATACAATATCCAAACAA
27023505 TAACAACAAAATAGTACCAATATAATAGTGGAATGGTAGCAAAATAGTGAAAAAATAACAAGAAA
131 TAACAACAAAATAGTACCAATATAATAGTGGAATGGTAGCAAAATAGTGAAAAAATAACAAGAAA
27023570 ATAGCAAAAAAAAAGAGTAAAAAAAGCAACGAAAAGCAGTATTTTTTTTGCATATTCGAGCCGGG
196 ATAGCAAAAAAAAAGAGTAAAAAAAGCAACGAAAAGCAGTATTTTTTTTGCATATTCGAGCCGGG
27023635 CCAGAAAAGCCTTACTTGGGGCCTGACCCATTTTCTAAACGAGTCTTATTTTTTTGCCCAAGCCT
261 CCAGAAAAGCCTTACTTGGGGCCTGACCCATTTTCTAAACGAGTCTTATTTTTTTGCCCAAGCCT
27023700 ATTTTTTGCCCAAGCCTTTCTTTTCGGGAGGGCCTTCGACCCGAGCCGGGTGACCCAACCCATAG
326 ATTTTTTGCCCAAGCCTTTCTTTTCGGGAGGGCCTTCGACCCGAGCCGGGTGACCCAACCCATAG
27023765 ACAGGTCTAGTCACACACTTCAATACAAATAAATTCATTTCTG
391 ACAGGTCTAGTCACACACTTCAATACAAATAAATTCATTTCTG
27023808 CCCAAAAAA-TGAAAATAAATATATATGTATACTTAAATAACAGTAAGATAGGTGCAATTTAATA
1 CCCAAAAAATTGAAAATAAATATATATGTATACTTAAATAACAGTAAGATAGGTGCAATTTAATA
27023872 AGCAAATGCCTCTAAAATAGTAACAAAATTAACAATAAAATAAAAGTTATACAATATCCAAACAA
66 AGCAAATGCCTCTAAAATAGTAACAAAATTAACAATAAAATAAAAGTTATACAATATCCAAACAA
27023937 TAACAACAAAATAGTACCAATATAATAGTGGAATGGTAGCAAAATAGTGAAAAAATAACAAGAAA
131 TAACAACAAAATAGTACCAATATAATAGTGGAATGGTAGCAAAATAGTGAAAAAATAACAAGAAA
27024002 ATAGCAAAAAAAAAGAGTAAAAAAAGCAACGAAAAGCAGTATTTTTTTTGCATATTCGAGCCGGG
196 ATAGCAAAAAAAAAGAGTAAAAAAAGCAACGAAAAGCAGTATTTTTTTTGCATATTCGAGCCGGG
27024067 CCAGAAAAGCCTTACTTGGGGCCTGACCCATTTTCTAAACGAGTCTTATTTTTTTGCCCAAGCCT
261 CCAGAAAAGCCTTACTTGGGGCCTGACCCATTTTCTAAACGAGTCTTATTTTTTTGCCCAAGCCT
27024132 ATTTTTTGCCCAAGCCTTTCTTTTCGGGAGGGCCTTCGACCCGAGCCGGGTGACCCAACCCATAG
326 ATTTTTTGCCCAAGCCTTTCTTTTCGGGAGGGCCTTCGACCCGAGCCGGGTGACCCAACCCATAG
27024197 ACAGGTCTAGTCACACACTTCAATACAAATAAATTCATTTCTG
391 ACAGGTCTAGTCACACACTTCAATACAAATAAATTCATTTCTG
27024240 TCATACACAT
Statistics
Matches: 432, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
432 423 0.98
433 9 0.02
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25
Consensus pattern (433 bp):
CCCAAAAAATTGAAAATAAATATATATGTATACTTAAATAACAGTAAGATAGGTGCAATTTAATA
AGCAAATGCCTCTAAAATAGTAACAAAATTAACAATAAAATAAAAGTTATACAATATCCAAACAA
TAACAACAAAATAGTACCAATATAATAGTGGAATGGTAGCAAAATAGTGAAAAAATAACAAGAAA
ATAGCAAAAAAAAAGAGTAAAAAAAGCAACGAAAAGCAGTATTTTTTTTGCATATTCGAGCCGGG
CCAGAAAAGCCTTACTTGGGGCCTGACCCATTTTCTAAACGAGTCTTATTTTTTTGCCCAAGCCT
ATTTTTTGCCCAAGCCTTTCTTTTCGGGAGGGCCTTCGACCCGAGCCGGGTGACCCAACCCATAG
ACAGGTCTAGTCACACACTTCAATACAAATAAATTCATTTCTG
Found at i:27027077 original size:12 final size:12
Alignment explanation
Indices: 27027062--27027115 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 12
27027052 TAATTTTTCC
27027062 AAATTTCTCTCT
1 AAATTTCTCTCT
*
27027074 AAA-TT-TCTCA
1 AAATTTCTCTCT
***
27027084 AAAAAGCTCTC-
1 AAATTTCTCTCT
27027095 AAATTTCTCTCT
1 AAATTTCTCTCT
27027107 AAATTTCTC
1 AAATTTCTC
27027116 AAAGCTCTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
10 7 0.21
11 10 0.30
12 16 0.48
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (12 bp):
AAATTTCTCTCT
Found at i:27027124 original size:21 final size:21
Alignment explanation
Indices: 27027091--27027131 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
27027081 TCAAAAAAGC
**
27027091 TCTCAAATTTCTCTCTAAATT
1 TCTCAAAGCTCTCTCTAAATT
*
27027112 TCTCAAAGCTCTCTTTAAAT
1 TCTCAAAGCTCTCTCTAAAT
27027132 CACAATTTCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.44
Consensus pattern (21 bp):
TCTCAAAGCTCTCTCTAAATT
Found at i:27028815 original size:25 final size:25
Alignment explanation
Indices: 27028778--27028860 Score: 89
Period size: 25 Copynumber: 3.3 Consensus size: 25
27028768 TCAACAGCTC
* *
27028778 ACGAGCTGTGAATCGATAAGCTCAT
1 ACGAGCTGAGAATCGGTAAGCTCAT
* *
27028803 ACGAGTTGAGAATCGGTGAGCTC-T
1 ACGAGCTGAGAATCGGTAAGCTCAT
*
27028827 CACGAGCT-ACAAATCGGTAAGCTCAT
1 -ACGAGCTGA-GAATCGGTAAGCTCAT
27028853 ACGAGCTG
1 ACGAGCTG
27028861 TGGTGTGTCC
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
24 2 0.04
25 44 0.94
26 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (25 bp):
ACGAGCTGAGAATCGGTAAGCTCAT
Found at i:27033505 original size:52 final size:50
Alignment explanation
Indices: 27033448--27033575 Score: 118
Period size: 53 Copynumber: 2.5 Consensus size: 50
27033438 CATAAATTTG
*
27033448 AAAAAAAAAATTAGGGTTTGAGGGAAGTAAAAATTTT-GAGAGAAAGTAAA
1 AAAAAAAAAATTAGGGTTTGAGGGAAGTAAAAATTTTGGA-AAAAAGTAAA
* ** * *
27033498 AGGAAAAAGAAACTGCGGGTTT-AGGGGAAGTAAAAGTTTTGGAAAAAATTAAA
1 A--AAAAA-AAAATTAGGGTTTGA-GGGAAGTAAAAATTTTGGAAAAAAGTAAA
* *
27033551 AAGAAAAAAATTAGTGTTTG-GGGAA
1 AAAAAAAAAATTAGGGTTTGAGGGAA
27033576 AATAGATTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
49 5 0.08
50 10 0.16
51 4 0.07
52 6 0.10
53 34 0.56
54 2 0.03
ACGTcount: A:0.50, C:0.02, G:0.27, T:0.22
Consensus pattern (50 bp):
AAAAAAAAAATTAGGGTTTGAGGGAAGTAAAAATTTTGGAAAAAAGTAAA
Found at i:27035143 original size:8 final size:7
Alignment explanation
Indices: 27035125--27035190 Score: 55
Period size: 8 Copynumber: 8.9 Consensus size: 7
27035115 TGGCATCTCC
*
27035125 CTTTATT
1 CTTTTTT
27035132 CTTTTCTT
1 CTTTT-TT
27035140 C-TTTTT
1 CTTTTTT
27035146 CTTTTTCT
1 CTTTTT-T
27035154 CTCTTTATT
1 CT-TTT-TT
27035163 CTTTTCTT
1 CTTTT-TT
27035171 C-TTTTT
1 CTTTTTT
27035177 CTTTTTCT
1 CTTTTT-T
27035185 CTTTTT
1 CTTTTT
27035191 CTTCTAGTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
6 6 0.12
7 18 0.36
8 19 0.38
9 6 0.12
10 1 0.02
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (7 bp):
CTTTTTT
Found at i:27035149 original size:14 final size:15
Alignment explanation
Indices: 27035120--27035193 Score: 91
Period size: 14 Copynumber: 4.9 Consensus size: 15
27035110 ATGACTGGCA
*
27035120 TCTCCCTTTATTCTTT
1 TCTCTCTTT-TTCTTT
27035136 TCT-TCTTTTTCTTTT
1 TCTCTCTTTTTC-TTT
27035151 TCTCTCTTTATTCTTT
1 TCTCTCTTT-TTCTTT
27035167 TCT-TCTTTTTCTTT
1 TCTCTCTTTTTCTTT
27035181 T-TCTCTTTTTCTT
1 TCTCTCTTTTTCTT
27035194 CTAGTATCCA
Statistics
Matches: 53, Mismatches: 1, Indels: 10
0.83 0.02 0.16
Matches are distributed among these distances:
13 1 0.02
14 20 0.38
15 15 0.28
16 14 0.26
17 3 0.06
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (15 bp):
TCTCTCTTTTTCTTT
Found at i:27035163 original size:31 final size:31
Alignment explanation
Indices: 27035120--27035195 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
27035110 ATGACTGGCA
*
27035120 TCTCCCTTTATTCTTTTCTTCTTTTTCTTTT
1 TCTCTCTTTATTCTTTTCTTCTTTTTCTTTT
27035151 TCTCTCTTTATTCTTTTCTTCTTTTTCTTTT
1 TCTCTCTTTATTCTTTTCTTCTTTTTCTTTT
* *
27035182 TCTCTTTTTCTTCT
1 TCTCTCTTTATTCT
27035196 AGTATCCAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.03, C:0.25, G:0.00, T:0.72
Consensus pattern (31 bp):
TCTCTCTTTATTCTTTTCTTCTTTTTCTTTT
Found at i:27041881 original size:9 final size:8
Alignment explanation
Indices: 27041864--27042042 Score: 67
Period size: 8 Copynumber: 21.2 Consensus size: 8
27041854 TCTTTTCTTG
27041864 ATTTCTTTT
1 ATTT-TTTT
27041873 ATTTGTTTTT
1 A-TT-TTTTT
*
27041883 AATTTTTT
1 ATTTTTTT
*
27041891 ACTTTTTCTG
1 A-TTTTT-TT
27041901 ATTTTTTTT
1 A-TTTTTTT
*
27041910 ATTTGTTT
1 ATTTTTTT
* *
27041918 CTCCTTTTT
1 AT-TTTTTT
**
27041927 CGTTTTTT
1 ATTTTTTT
*
27041935 ATTTGTTT
1 ATTTTTTT
*
27041943 -TTTATTT
1 ATTTTTTT
* *
27041950 ACTTTTTC
1 ATTTTTTT
27041958 ATTTTTTT
1 ATTTTTTT
*
27041966 ATTTATTT
1 ATTTTTTT
* ** *
27041974 -GTCATTC
1 ATTTTTTT
27041981 ATTTTTTT
1 ATTTTTTT
27041989 ATTTGTTTT
1 ATTT-TTTT
*
27041998 -TTTGTTT
1 ATTTTTTT
*
27042005 ATTTATTT
1 ATTTTTTT
27042013 ATTTTTATT
1 ATTTTT-TT
27042022 ATTTATTATT
1 ATTT-TT-TT
27042032 ATTTGTTTT
1 ATTT-TTTT
27042041 AT
1 AT
27042043 AATATTTTAT
Statistics
Matches: 127, Mismatches: 32, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
7 13 0.10
8 61 0.48
9 27 0.21
10 25 0.20
11 1 0.01
ACGTcount: A:0.14, C:0.06, G:0.05, T:0.75
Consensus pattern (8 bp):
ATTTTTTT
Found at i:27041963 original size:20 final size:20
Alignment explanation
Indices: 27041940--27042018 Score: 86
Period size: 20 Copynumber: 3.8 Consensus size: 20
27041930 TTTTTATTTG
*
27041940 TTTTTTATTTACTTTTTCAT
1 TTTTTTATTTATTTTTTCAT
27041960 TTTTTTATTTATTTGTCATTCAT
1 TTTTTTATTTATTT-T--TTCAT
* **
27041983 TTTTTTATTTGTTTTTTTGT
1 TTTTTTATTTATTTTTTCAT
*
27042003 TTATTTATTTATTTTT
1 TTTTTTATTTATTTTT
27042019 ATTATTTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
20 30 0.60
21 1 0.02
22 1 0.02
23 18 0.36
ACGTcount: A:0.14, C:0.05, G:0.04, T:0.77
Consensus pattern (20 bp):
TTTTTTATTTATTTTTTCAT
Found at i:27041972 original size:4 final size:4
Alignment explanation
Indices: 27041932--27042028 Score: 56
Period size: 4 Copynumber: 24.5 Consensus size: 4
27041922 TTTTTCGTTT
* * * * *
27041932 TTTA TTTG TTT- TTTA TTTA CTTT- TTCA TTTT TTTA TTTA TTT- GTCA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * * *
27041978 TTCA TTTT TTTA TTTG TTTT TTTG TTTA TTTA TTTA TTTT TATTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA
27042027 TT
1 TT
27042029 ATTATTTGTT
Statistics
Matches: 71, Mismatches: 17, Indels: 10
0.72 0.17 0.10
Matches are distributed among these distances:
3 6 0.08
4 59 0.83
5 6 0.08
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:27041981 original size:23 final size:20
Alignment explanation
Indices: 27041940--27042031 Score: 71
Period size: 20 Copynumber: 4.5 Consensus size: 20
27041930 TTTTTATTTG
27041940 TTTTTTATTTACTTTTTCAT
1 TTTTTTATTTACTTTTTCAT
*
27041960 TTTTTTATTTATTTGTCATTCAT
1 TTTTTTATTTACTT-T--TTCAT
** **
27041983 TTTTTTATTTGTTTTTTTGT
1 TTTTTTATTTACTTTTTCAT
*
27042003 TTATTTATTTA-TTTTT-AT
1 TTTTTTATTTACTTTTTCAT
27042021 TATTTATTATT
1 T-TTT-TTATT
27042032 ATTTGTTTTA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.03
19 7 0.12
20 30 0.51
21 1 0.02
22 1 0.02
23 18 0.31
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTTTTATTTACTTTTTCAT
Found at i:27041999 original size:12 final size:12
Alignment explanation
Indices: 27041932--27042074 Score: 64
Period size: 12 Copynumber: 11.8 Consensus size: 12
27041922 TTTTTCGTTT
*
27041932 TTTATTTGTTT-
1 TTTATTTTTTTA
*
27041943 TTTATTTACTTT-
1 TTTATTT-TTTTA
*
27041955 TTCATTTTTTTA
1 TTTATTTTTTTA
* *
27041967 TTTA-TTTGTCA
1 TTTATTTTTTTA
*
27041978 TTCATTTTTTTA
1 TTTATTTTTTTA
* *
27041990 TTTGTTTTTTTG
1 TTTATTTTTTTA
*
27042002 TTTATTTATTTA
1 TTTATTTTTTTA
27042014 TTT-TTATTATTTA
1 TTTATT-TT-TTTA
27042027 -TTATTATTTGTT-
1 TTTATT-TTT-TTA
* *
27042039 TTATAATATTTTA
1 TT-TATTTTTTTA
*
27042052 TGTATTTTTGTATA
1 TTTATTTTT-T-TA
27042066 TTTATTTTT
1 TTTATTTTT
27042075 GTAATTTACC
Statistics
Matches: 98, Mismatches: 22, Indels: 21
0.70 0.16 0.15
Matches are distributed among these distances:
11 20 0.20
12 49 0.50
13 16 0.16
14 13 0.13
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (12 bp):
TTTATTTTTTTA
Found at i:27042042 original size:19 final size:17
Alignment explanation
Indices: 27041931--27042074 Score: 70
Period size: 16 Copynumber: 8.6 Consensus size: 17
27041921 CTTTTTCGTT
*
27041931 TTTTATTTGTTT-TTTA
1 TTTTATTTTTTTATTTA
* *
27041947 -TTTACTTTTTCATTT-
1 TTTTATTTTTTTATTTA
* * *
27041962 TTTTATTTATTT-GTCA
1 TTTTATTTTTTTATTTA
* *
27041978 -TTCATTTTTTTATTTG
1 TTTTATTTTTTTATTTA
*
27041994 TTTT-TTTGTTTATTTA
1 TTTTATTTTTTTATTTA
27042010 -TTTATTTTTATTATTTA
1 TTTTATTTTT-TTATTTA
*
27042027 TTATTATTTGTTTTATAATA
1 TT-TTATTT-TTTTAT-TTA
* *
27042047 TTTTATGTATTTT-TGTA
1 TTTTAT-TTTTTTATTTA
27042064 TATTTATTTTT
1 T-TTTATTTTT
27042075 GTAATTTACC
Statistics
Matches: 94, Mismatches: 21, Indels: 25
0.67 0.15 0.18
Matches are distributed among these distances:
15 21 0.22
16 26 0.28
17 15 0.16
18 7 0.07
19 18 0.19
20 7 0.07
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (17 bp):
TTTTATTTTTTTATTTA
Found at i:27042081 original size:13 final size:14
Alignment explanation
Indices: 27042054--27042082 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
27042044 ATATTTTATG
27042054 TATTTTTGTATATT
1 TATTTTTGTATATT
27042068 TATTTTTGTA-ATT
1 TATTTTTGTATATT
27042081 TA
1 TA
27042083 CCGTAGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (14 bp):
TATTTTTGTATATT
Found at i:27045584 original size:41 final size:40
Alignment explanation
Indices: 27045504--27045639 Score: 136
Period size: 41 Copynumber: 3.5 Consensus size: 40
27045494 ACCAGTTTGG
* *
27045504 CACCCAGTGCCTCATTGGAT-AATTTGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGGATAAATCTGAAGTA-TAAATTGA
*
27045544 CACCCAGTGCCTCATCGAATAAATCTGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGGATAAATCTGAAGT-ATAAATTGA
* * * * * *
27045585 CACCTAATGTCTCATCGGTTAAA-CCGAAG--TAAATTGG
1 CACCCAGTGCCTCATCGGATAAATCTGAAGTATAAATTGA
*
27045622 CACCCAGTGCCTTATCGG
1 CACCCAGTGCCTCATCGG
27045640 CTCGAAGTCG
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
37 21 0.26
40 23 0.29
41 35 0.44
42 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGGATAAATCTGAAGTATAAATTGA
Found at i:27046519 original size:25 final size:25
Alignment explanation
Indices: 27046491--27046547 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
27046481 TCTTTCTCTT
27046491 TTTCTTTTTA-TTTCTTTCCTTTCTG
1 TTTCTTTTTACTTTCTTT-CTTTCTG
* *
27046516 TTTCGTTTTACTTTCTTTCTTTCTT
1 TTTCTTTTTACTTTCTTTCTTTCTG
27046541 TTTCTTT
1 TTTCTTT
27046548 ATTTCATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 21 0.75
26 7 0.25
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.74
Consensus pattern (25 bp):
TTTCTTTTTACTTTCTTTCTTTCTG
Found at i:27048708 original size:7 final size:7
Alignment explanation
Indices: 27048696--27048729 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
27048686 TAATAAGGTA
*
27048696 TTTATAG
1 TTTATAT
27048703 TTTATAT
1 TTTATAT
27048710 TTTATAT
1 TTTATAT
27048717 TTTATAT
1 TTTATAT
27048724 TTTATA
1 TTTATA
27048730 GTTATTGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (7 bp):
TTTATAT
Found at i:27048715 original size:14 final size:14
Alignment explanation
Indices: 27048696--27048732 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
27048686 TAATAAGGTA
27048696 TTTATAGTTTATAT
1 TTTATAGTTTATAT
*
27048710 TTTATATTTTATAT
1 TTTATAGTTTATAT
27048724 TTTATAGTT
1 TTTATAGTT
27048733 ATTGTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (14 bp):
TTTATAGTTTATAT
Found at i:27051414 original size:41 final size:40
Alignment explanation
Indices: 27051334--27051469 Score: 136
Period size: 41 Copynumber: 3.5 Consensus size: 40
27051324 ACCAGTTTGG
* *
27051334 CACCCAGTGCCTCATTGGAT-AATTTGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGGATAAATCTGAAGTA-TAAATTGA
*
27051374 CACCCAGTGCCTCATCGAATAAATCTGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGGATAAATCTGAAGT-ATAAATTGA
* * * * * *
27051415 CACCTAATGTCTCATCGGTTAAA-CCGAAG--TAAATTGG
1 CACCCAGTGCCTCATCGGATAAATCTGAAGTATAAATTGA
*
27051452 CACCCAGTGCCTTATCGG
1 CACCCAGTGCCTCATCGG
27051470 CTCGAAGTCG
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
37 21 0.26
40 23 0.29
41 35 0.44
42 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGGATAAATCTGAAGTATAAATTGA
Found at i:27052349 original size:25 final size:25
Alignment explanation
Indices: 27052321--27052377 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
27052311 TCTTTCTCTT
27052321 TTTCTTTTTA-TTTCTTTCCTTTCTG
1 TTTCTTTTTACTTTCTTT-CTTTCTG
* *
27052346 TTTCGTTTTACTTTCTTTCTTTCTT
1 TTTCTTTTTACTTTCTTTCTTTCTG
27052371 TTTCTTT
1 TTTCTTT
27052378 ATTTCATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 21 0.75
26 7 0.25
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.74
Consensus pattern (25 bp):
TTTCTTTTTACTTTCTTTCTTTCTG
Found at i:27052470 original size:27 final size:27
Alignment explanation
Indices: 27052440--27052491 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
27052430 TAAGTAAACA
**
27052440 TATTATAATATATATTTTAAATTTAGT
1 TATTATAATATATATAATAAATTTAGT
*
27052467 TATTATCATATATATAATAAATTTA
1 TATTATAATATATATAATAAATTTA
27052492 CACCTAGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
TATTATAATATATATAATAAATTTAGT
Found at i:27058966 original size:17 final size:18
Alignment explanation
Indices: 27058944--27058978 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
27058934 AATATAATAG
27058944 GCACAATTAAAT-TTTAA
1 GCACAATTAAATATTTAA
*
27058961 GCACAATTGAATATTTAA
1 GCACAATTAAATATTTAA
27058979 AACCCCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (18 bp):
GCACAATTAAATATTTAA
Found at i:27059355 original size:40 final size:41
Alignment explanation
Indices: 27059300--27059409 Score: 138
Period size: 41 Copynumber: 2.8 Consensus size: 41
27059290 ACTAGTTTGG
* * *
27059300 CACCCAGTGCCTCATCGGAT-AATTCGAAGTAGTAAATTGA
1 CACCCAATGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
*
27059340 CACCCAATGTCTCATCGAATAAATCCGAAGTAGTAAATTGA
1 CACCCAATGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
* *
27059381 CACCC-A-GTCTCATCGGTTAAA-CTGAAGTA
1 CACCCAATGTCTCATCGGATAAATCCGAAGTA
27059410 AATTGGCAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
38 7 0.11
39 13 0.21
40 18 0.29
41 24 0.39
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (41 bp):
CACCCAATGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
Found at i:27060947 original size:15 final size:15
Alignment explanation
Indices: 27060927--27060961 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
27060917 GAATCTAAAC
*
27060927 TGTGTTAATAAATAT
1 TGTGTTAACAAATAT
27060942 TGTGTTAACAAATAT
1 TGTGTTAACAAATAT
27060957 TGTGT
1 TGTGT
27060962 GTGAATTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (15 bp):
TGTGTTAACAAATAT
Found at i:27062831 original size:22 final size:21
Alignment explanation
Indices: 27062806--27062851 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
27062796 GAAATAGACT
*
27062806 CTTTAAATTTATCATTTTATCC
1 CTTTAAATTTACCATTTT-TCC
27062828 CTTTAAATTTACCATTTTTCC
1 CTTTAAATTTACCATTTTTCC
27062849 CTT
1 CTT
27062852 CAAAAAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.54
Consensus pattern (21 bp):
CTTTAAATTTACCATTTTTCC
Found at i:27070760 original size:41 final size:41
Alignment explanation
Indices: 27070709--27070790 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
27070699 GTCTCATGTT
*
27070709 TACATTACTTACATATTATAATATATTTTATATAGTTTGTA
1 TACATTACTTACATATTATAATATATTTTATATAATTTGTA
27070750 TACATTACTTACATATTATAATATATTTTATATAATTTGTA
1 TACATTACTTACATATTATAATATATTTTATATAATTTGTA
27070791 ATAATGATTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (41 bp):
TACATTACTTACATATTATAATATATTTTATATAATTTGTA
Found at i:27072118 original size:2 final size:2
Alignment explanation
Indices: 27072111--27072138 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
27072101 TTATAAGCAA
27072111 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27072139 TATTCCACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27078791 original size:12 final size:12
Alignment explanation
Indices: 27078774--27078798 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27078764 GGTGTGCATT
27078774 CGGTTAACCGAC
1 CGGTTAACCGAC
27078786 CGGTTAACCGAC
1 CGGTTAACCGAC
27078798 C
1 C
27078799 CGAATTAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:27079398 original size:7 final size:7
Alignment explanation
Indices: 27079386--27079430 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
27079376 GTACAGAAGA
27079386 AAACATG
1 AAACATG
27079393 AAACATG
1 AAACATG
* **
27079400 CAGTATG
1 AAACATG
27079407 AAACATG
1 AAACATG
27079414 AAAACATG
1 -AAACATG
27079422 AAACATG
1 AAACATG
27079429 AA
1 AA
27079431 TTATTCTTGG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
7 24 0.77
8 7 0.23
ACGTcount: A:0.56, C:0.13, G:0.16, T:0.16
Consensus pattern (7 bp):
AAACATG
Done.