Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 97 of 141
Found at i:31490735 original size:99 final size:100
Alignment explanation
Indices: 31490507--31490742 Score: 298
Period size: 99 Copynumber: 2.4 Consensus size: 100
31490497 GGTAAAGAGA
* *
31490507 TCCCATGTAAGATC-ATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTTATGTAAGACC
1 TCCCATGTAAGA-CAATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCACGTAAGACC
* * * * **
31490571 ATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGG
65 ATGTCTGGGACATGACATGGGCACCGAGATGAGAAC
* *
31490607 TCCCATGAAAGA-ACATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC-CCCGTAAGACC
1 TCCCATGTAAGACA-ATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCACGTAAGACC
*
31490670 ATGTCTGGGACATGACATGGGCACCGATATGAGAAC
65 ATGTCTGGGACATGACATGGGCACCGAGATGAGAAC
* * * *
31490706 TCCCATGTAAGACAATATCTAGGATATGGCATTGGCA
1 TCCCATGTAAGACAATGTCTGGGACATGGCGTTGGCA
31490743 GTAAAGGAAA
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
99 67 0.57
100 50 0.43
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (100 bp):
TCCCATGTAAGACAATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCACGTAAGACCA
TGTCTGGGACATGACATGGGCACCGAGATGAGAAC
Found at i:31493440 original size:791 final size:792
Alignment explanation
Indices: 31491917--31493503 Score: 2926
Period size: 791 Copynumber: 2.0 Consensus size: 792
31491907 CTTACCATGT
31491917 GATGATATTATTAACTTATGTGTTTAATCACTAGCTTGTGATTATGATAAATGTTCAATATGAAC
1 GATGATATTATTAACTTATGTGTTTAATCACTAGCTTGTGATTATGATAAATGTTCAATATGAAC
*
31491982 CAAGACATGTGTGTATGAAATTTATTAAAACGGTGTTACTTAGAAAACATGATATGTTATGAAGA
66 CAAGACATGTGTGTATGAAATTTATTAAAACGGTGTTACATAGAAAACATGATATGTTATGAAGA
*
31492047 ATGATAAATCCAATTGAATCATGTTTAAGTATAGTAGTTATCTATGTCAAATTCATATGAATTAT
131 ATGATAAATCCAATTGAATCATGTTTAAGTATAGTAGTTATCGATGTCAAATTCATATGAA-TAT
* *
31492112 TTTTAAATGAACTAAGATGTGTTATTGATATGCTTAGGCTTGTGCTAAGCTATAAGTTGGATTGT
195 TCTTAAATGAACTAACATGTGTTATTGATATGCTTAGGCTTGTGCTAAGCTATAAGTTGGATTGT
31492177 ATTATGTTAGTTTTAAAGAAATGCATCGAAATGGTAATTAACCAAATGGAAAGATGTTTAGGGCA
260 ATTATGTTAGTTTTAAAGAAATGCATCGAAATGGTAATTAACCAAATGGAAAGATGTTTAGGGCA
31492242 TGAAAGGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATAGTTTATTTT
325 TGAAAGGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATAGTTTATTTT
31492307 AAAAGAGTCATACTTAAATGCACTAGGTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGT
390 AAAAGAGTCATACTTAAATGCACTAGGTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGT
31492372 GTTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTA
455 GTTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTA
*
31492437 CCGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTCTGTTATACATGG
520 CCGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTATGTTATACATGG
*
31492502 AAAGTGTTCGGGTTGGTAATGAAGCTATTCATTTTTGAGATGATATTTATATAGATTGGTAAATA
585 AAAGTGTTCGGGTTGGTAATGAAGCTATTCATTTGTGAGATGATATTTATATAGATTGGTAAATA
31492567 TTGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGAAATGTTATGTT
650 TTGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGAAATGTTATGTT
*
31492632 TAAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTATTTTACAGA
715 TAAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTACTTTACAGA
*
31492697 TTATCGAAAGCTC
780 TTATCAAAAGCTC
* *
31492710 GATGATATTATTAAGTTATGTGTTTAATCACTAGCTTGTGATTATGGTAAATGTTCAATATGAAC
1 GATGATATTATTAACTTATGTGTTTAATCACTAGCTTGTGATTATGATAAATGTTCAATATGAAC
* *
31492775 CATGACATGTGTGTATGAAATTTATTAAAATGGTGTTACATAGAAAACATGATATGTTATGAAGA
66 CAAGACATGTGTGTATGAAATTTATTAAAACGGTGTTACATAGAAAACATGATATGTTATGAAGA
*
31492840 ATGATAAATCTAATTGAATCATGTTTAAGTATAGTAGTTATCGATGTCAAATT-ATTATGAA-AT
131 ATGATAAATCCAATTGAATCATGTTTAAGTATAGTAGTTATCGATGTCAAATTCA-TATGAATAT
* * *
31492903 TCTTAAATGAACTAACATGTGTTGTTGATGTGCTTAGGCTTGTGCTAAGCTATAGGTTGGATTGT
195 TCTTAAATGAACTAACATGTGTTATTGATATGCTTAGGCTTGTGCTAAGCTATAAGTTGGATTGT
* * *
31492968 GTTATGTTAGTTTTAAAGAAATGCATCGAATTGGTAATTGACCAAATGGAAAGATGTTTAGGGCA
260 ATTATGTTAGTTTTAAAGAAATGCATCGAAATGGTAATTAACCAAATGGAAAGATGTTTAGGGCA
* *
31493033 TGAAATGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATATTTTATTTT
325 TGAAAGGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATAGTTTATTTT
*
31493098 AAAAGAGTCATACTTAAATGCACTAGTTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGT
390 AAAAGAGTCATACTTAAATGCACTAGGTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGT
31493163 GTTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTA
455 GTTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTA
31493228 CCGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTATGTTATACATGG
520 CCGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTATGTTATACATGG
*
31493293 AAAGTGTTCGGGTTGGTAATGAAGCTATTCATTTGTGAGATGATATTTATATAGATTGGTAAATC
585 AAAGTGTTCGGGTTGGTAATGAAGCTATTCATTTGTGAGATGATATTTATATAGATTGGTAAATA
*
31493358 TTGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGGAATGTTATGTT
650 TTGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGAAATGTTATGTT
31493423 TAAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTACTTTACAGA
715 TAAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTACTTTACAGA
31493488 TTATCAAAAGCTC
780 TTATCAAAAGCTC
31493501 GAT
1 GAT
31493504 CGGGTTGTAA
Statistics
Matches: 769, Mismatches: 24, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
791 586 0.76
792 1 0.00
793 182 0.24
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (792 bp):
GATGATATTATTAACTTATGTGTTTAATCACTAGCTTGTGATTATGATAAATGTTCAATATGAAC
CAAGACATGTGTGTATGAAATTTATTAAAACGGTGTTACATAGAAAACATGATATGTTATGAAGA
ATGATAAATCCAATTGAATCATGTTTAAGTATAGTAGTTATCGATGTCAAATTCATATGAATATT
CTTAAATGAACTAACATGTGTTATTGATATGCTTAGGCTTGTGCTAAGCTATAAGTTGGATTGTA
TTATGTTAGTTTTAAAGAAATGCATCGAAATGGTAATTAACCAAATGGAAAGATGTTTAGGGCAT
GAAAGGGTGGTAAGAATCAAAGTATTCAATTTCTTATGAAATGATTTATTGTATAGTTTATTTTA
AAAGAGTCATACTTAAATGCACTAGGTTGTGGTTATAATTGATGTTTATGCTCATGTTTTGTGTG
TTATACAAATGAAACGATTGAGAATGGGTAAATGAAATGGTAAGTAAGTGAATGAAATGGATTAC
CGTTTTAAGAAAAGGGAGATGATTATGCAATTCAATGTATGAGACATTATTATGTTATACATGGA
AAGTGTTCGGGTTGGTAATGAAGCTATTCATTTGTGAGATGATATTTATATAGATTGGTAAATAT
TGAAGCATTGATATAGGTTTATTCATGACATATAAAGTTCATATTTGAAATGAAATGTTATGTTT
AAAGTTTATGCGAGCTTACTAAGCATTCATTGCTTGCGTGGTTGTCATTTTCTTACTTTACAGAT
TATCAAAAGCTC
Found at i:31494931 original size:50 final size:50
Alignment explanation
Indices: 31494806--31495053 Score: 334
Period size: 50 Copynumber: 4.8 Consensus size: 50
31494796 ATTTGGGTGA
* * *
31494806 AGAGATCCCATGTAAGACCCTGTCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC--GAG---ATG
* * *
31494862 AGAGGTTCCATCTAAGACCATGTCTGGGACGTGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
31494912 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
31494962 AGATGTCCCCTGTAAGACCATGTCTGGGACGTGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
31495012 AGAGCTCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
31495054 TGTTATGATC
Statistics
Matches: 173, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
50 132 0.76
53 3 0.02
55 2 0.01
56 36 0.21
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:31511696 original size:22 final size:23
Alignment explanation
Indices: 31511671--31511727 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
31511661 TGTGAAGCAT
*
31511671 TTGTGGCGTATTATGTGATGC-C
1 TTGTGGTGTATTATGTGATGCTC
* * *
31511693 TTGTGATGTATTTTGTGATGCTT
1 TTGTGGTGTATTATGTGATGCTC
31511716 TTGTGGTGTATT
1 TTGTGGTGTATT
31511728 TTATAACACC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.12, C:0.07, G:0.30, T:0.51
Consensus pattern (23 bp):
TTGTGGTGTATTATGTGATGCTC
Found at i:31511725 original size:23 final size:22
Alignment explanation
Indices: 31511659--31511729 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 22
31511649 AGGAAAGTTA
* *
31511659 TTTGTGAAGCATTTGTGGCGTAT
1 TTTGTGATGC-TTTGTGGTGTAT
* * *
31511682 TATGTGATGCCTTGTGATGTAT
1 TTTGTGATGCTTTGTGGTGTAT
31511704 TTTGTGATGCTTTTGTGGTGTAT
1 TTTGTGATGC-TTTGTGGTGTAT
31511727 TTT
1 TTT
31511730 ATAACACCCT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 18 0.46
23 21 0.54
ACGTcount: A:0.14, C:0.07, G:0.28, T:0.51
Consensus pattern (22 bp):
TTTGTGATGCTTTGTGGTGTAT
Found at i:31513628 original size:67 final size:67
Alignment explanation
Indices: 31513520--31513688 Score: 239
Period size: 67 Copynumber: 2.5 Consensus size: 67
31513510 TTTATGCTAT
* *
31513520 CATAGTCGAGCTATGGTCTTACACATCATGCCCCATGTTTAATGTCATGGCAGACTCTCTATGTT
1 CATAGTCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTCATGGCAGACTCTCTATGTT
31513585 GC
66 GC
* * * *
31513587 CATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCTTGGCGGACTCTCTATGTT
1 CATAGTCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTCATGGCAGACTCTCTATGTT
*
31513652 GT
66 GC
* * * *
31513654 CGTATTTGAGCTATGGTCTTACAAATTATACCCCA
1 CATAGTCGAGCTATGGTCTTACACATTATACCCCA
31513689 CCAGACTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 90 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (67 bp):
CATAGTCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTCATGGCAGACTCTCTATGTT
GC
Found at i:31513785 original size:120 final size:120
Alignment explanation
Indices: 31513570--31513808 Score: 361
Period size: 120 Copynumber: 2.0 Consensus size: 120
31513560 AATGTCATGG
* *
31513570 CAGACTCTCTATGTTGCCATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCTT
1 CAGACTCTCTATATTGCCATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCCT
* * * * *
31513635 GGCGGACTCTCTATGTTGTCGTATTTGAGCTATGGTCTTACAAATTATACCCCAC
66 AGCGGACTCTCTATGTTGCCATAGTCGAGCTATGGTCTTACAAATTATACCCCAC
* * **
31513690 CAGACTCTTTATATTTCCATAGTCGAGCTGTGGTCTTACACATTATTCCCCATGTTTAATGTCCT
1 CAGACTCTCTATATTGCCATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCCT
* *
31513755 AGCGGACTCTCTATGTTGCCATAGTCGAGCTATGGTCTTACACATTATTCCCCA
66 AGCGGACTCTCTATGTTGCCATAGTCGAGCTATGGTCTTACAAATTATACCCCA
31513809 TTACAGCCCA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 106 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.36
Consensus pattern (120 bp):
CAGACTCTCTATATTGCCATAGTCGAGCTACGGTCTTACACATTATTCCCCATGTTTAATGTCCT
AGCGGACTCTCTATGTTGCCATAGTCGAGCTATGGTCTTACAAATTATACCCCAC
Found at i:31515470 original size:18 final size:18
Alignment explanation
Indices: 31515447--31515481 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31515437 GGCTAAGGTT
31515447 AAAAGAACGGGAAGGAAG
1 AAAAGAACGGGAAGGAAG
* *
31515465 AAAAGAAGGGGGAGGAA
1 AAAAGAACGGGAAGGAA
31515482 AGGAGAATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.03, G:0.43, T:0.00
Consensus pattern (18 bp):
AAAAGAACGGGAAGGAAG
Found at i:31518541 original size:54 final size:54
Alignment explanation
Indices: 31518482--31518826 Score: 308
Period size: 54 Copynumber: 6.4 Consensus size: 54
31518472 TGCGTTTCGT
* *
31518482 GGGTAAAATGACCGAAATACCCTCGAAAGGTTAAATGACCAAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCGAA
* * * * *
31518536 GGGTAAAATAACCAAAATACCCTC-AAAGAGTAAAATAATCGAAAT-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCTCGAAAG-GTAAAATGACCGAAATACCCTCGAA
* * ** *
31518589 GGGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGAATGAAATATCCC-CGAT
1 GGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAAATA-CCCTCGAA
* * * *
31518643 GGGTAAAATGACCGAAATACCCTCG-AAGAGTAAAATGACTGAAATTCCC-CCAGT
1 GGGTAAAATGACCGAAATACCCTCGAAAG-GTAAAATGACCGAAATACCCTCGA-A
** * * *
31518697 GGGTAAAATGATTGAAATAACCTC-AAAGGGTAAAATGACCGCAATA-CCTCCGAT
1 GGGTAAAATGACCGAAATACCCTCGAAA-GGTAAAATGACCGAAATACCCT-CGAA
* * * * ** * **
31518751 GGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATAACTAAAATATCCTAAAA
1 GGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCGAA
*
31518805 GGGTAATATGACCGAAATACCC
1 GGGTAAAATGACCGAAATACCC
31518827 CCATAGAGTA
Statistics
Matches: 238, Mismatches: 41, Indels: 24
0.79 0.14 0.08
Matches are distributed among these distances:
53 56 0.24
54 171 0.72
55 11 0.05
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (54 bp):
GGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCGAA
Found at i:31518704 original size:81 final size:80
Alignment explanation
Indices: 31518482--31518842 Score: 349
Period size: 81 Copynumber: 4.5 Consensus size: 80
31518472 TGCGTTTCGT
* *
31518482 GGGTAAAATGACCGAAATACCCTCGAA-AGGTTAAATGACCAAAATACCCTCGAAGGGTAAAATA
1 GGGTAAAATGACCGAAATACCCTCGAAGA-GTAAAATGACCAAAATACCCCCGAAGGGTAAAATA
**
31518546 ACCAAA-ATACCCTCAAA
65 ATGAAATAT-CCC-CAAA
* * * * * *
31518563 GAGTAAAATAATCGAAAT-CCCTCAAAGGGTAAAATGACCAAAATACCCTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCTCGAAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAAT-A
* *
31518627 ATGAAATATCCCCGAT
65 ATGAAATATCCCCAAA
** * *
31518643 GGGTAAAATGACCGAAATACCCTCGAAGAGTAAAATGACTGAAATTCCCCC-AGTGGGTAAAATG
1 GGGTAAAATGACCGAAATACCCTCGAAGAGTAAAATGACCAAAATACCCCCGA-AGGGTAAAAT-
* * *
31518707 ATTGAAATAACCTCAAA
64 AATGAAATATCCCCAAA
* * *
31518724 GGGTAAAATGACCGCAATA-CCTCCGATGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATA
1 GGGTAAAATGACCGAAATACCCT-CGAAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAATA
* **
31518788 ACTAAAATATCCTAAAA
65 A-TGAAATATCCCCAAA
* *
31518805 GGGTAATATGACCGAAATACCC-CCATAGAGT-AAATGAC
1 GGGTAAAATGACCGAAATACCCTCGA-AGAGTAAAATGAC
31518843 TATTATACCC
Statistics
Matches: 229, Mismatches: 41, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
80 71 0.31
81 153 0.67
82 5 0.02
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (80 bp):
GGGTAAAATGACCGAAATACCCTCGAAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAATAA
TGAAATATCCCCAAA
Found at i:31518837 original size:27 final size:27
Alignment explanation
Indices: 31518482--31518842 Score: 278
Period size: 27 Copynumber: 13.4 Consensus size: 27
31518472 TGCGTTTCGT
*
31518482 GGGTAAAATGACCGAAATACCCTCGAAA
1 GGGTAAAATGACCGAAATACCC-CCAAA
* * * *
31518510 -GGTTAAATGACCAAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * *
31518536 GGGTAAAATAACCAAAATACCCTCAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * * *
31518563 GAGTAAAATAATCGAAAT-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * *
31518589 GGGTAAAATGACCAAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
** * * *
31518616 GGGTAAAATGAATGAAATATCCCCGAT
1 GGGTAAAATGACCGAAATACCCCCAAA
* *
31518643 GGGTAAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * * **
31518670 GAGTAAAATGACTGAAATTCCCCCAGT
1 GGGTAAAATGACCGAAATACCCCCAAA
** * *
31518697 GGGTAAAATGATTGAAATAACCTCAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* * * *
31518724 GGGTAAAATGACCGCAATACCTCCGAT
1 GGGTAAAATGACCGAAATACCCCCAAA
* *
31518751 GGGTAAAATGACCAAAATACCCCCGAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* ** * **
31518778 GGGTAAAATAACTAAAATATCCTAAAA
1 GGGTAAAATGACCGAAATACCCCCAAA
* *
31518805 GGGTAATATGACCGAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCCAAA
*
31518832 GAGT-AAATGAC
1 GGGTAAAATGAC
31518843 TATTATACCC
Statistics
Matches: 262, Mismatches: 69, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
26 30 0.11
27 232 0.89
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCCAAA
Found at i:31519210 original size:27 final size:29
Alignment explanation
Indices: 31519171--31519228 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
31519161 ACTGCATTGT
*
31519171 ACTGATTACTGTATTGGACTAA-GCCCAC
1 ACTGATTACTGTAATGGACTAAGGCCCAC
*
31519199 ACTG-TTACTGTAATGGGCTAAGGCCCAC
1 ACTGATTACTGTAATGGACTAAGGCCCAC
31519227 AC
1 AC
31519229 CATACCGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (29 bp):
ACTGATTACTGTAATGGACTAAGGCCCAC
Found at i:31526018 original size:27 final size:27
Alignment explanation
Indices: 31525980--31526228 Score: 290
Period size: 27 Copynumber: 9.3 Consensus size: 27
31525970 TACGATTCGT
*
31525980 GGGTAAAATGACCGAAATACCGTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
31526007 GGGTAAAATGACCGAAATACCGTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* *
31526034 GGGTAAAATGATCGAAATA-CCTTGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
31526060 GGGTAAAATGACCGAAATACCC-CTGAT
1 GGGTAAAATGACCGAAATACCCTC-GAA
* *
31526087 GGGTAAAATGACTGAAATACCCTCAAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* * * *
31526114 AGGTAAAATGAACAAAATGCCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* *
31526141 GGGTAAAATGACCGAAATACCCCCGAT
1 GGGTAAAATGACCGAAATACCCTCGAA
* * *
31526168 GGTTAAAATGACCAAAATA-CGTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* *
31526194 GGGTAAAATAACCGAAATACCC-CCATA
1 GGGTAAAATGACCGAAATACCCTCGA-A
31526221 GGGTAAAA
1 GGGTAAAA
31526229 GACTGTTATA
Statistics
Matches: 186, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
26 45 0.24
27 140 0.75
28 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.17
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCTCGAA
Found at i:31526198 original size:107 final size:107
Alignment explanation
Indices: 31525980--31526215 Score: 294
Period size: 107 Copynumber: 2.2 Consensus size: 107
31525970 TACGATTCGT
* * * * * *
31525980 GGGTAAAATGACCGAAATACCGTCGAAGGGTAAAATGACCGAAATACCGTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCTCAAAAGGTAAAATGAACAAAATACCCTCGAAGGGTAAAATGA
* ** * *
31526045 TCGAAATACCTTGAAGGGTAAAATGACCGAAATACCCCTGAT
66 CCGAAATACCCCGAAGGGTAAAATGACCAAAATACCCCTGAA
* *
31526087 GGGTAAAATGACTGAAATACCCTCAAAAGGTAAAATGAACAAAATGCCCTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCTCAAAAGGTAAAATGAACAAAATACCCTCGAAGGGTAAAATGA
* * **
31526152 CCGAAATACCCCCGATGGTTAAAATGACCAAAATACGTC-GAA
66 CCGAAATA-CCCCGAAGGGTAAAATGACCAAAATACCCCTGAA
*
31526194 GGGTAAAATAACCGAAATACCC
1 GGGTAAAATGACCGAAATACCC
31526216 CCATAGGGTA
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
107 86 0.79
108 23 0.21
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (107 bp):
GGGTAAAATGACCGAAATACCCTCAAAAGGTAAAATGAACAAAATACCCTCGAAGGGTAAAATGA
CCGAAATACCCCGAAGGGTAAAATGACCAAAATACCCCTGAA
Found at i:31529135 original size:21 final size:21
Alignment explanation
Indices: 31529111--31529152 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
31529101 TTAATTCAAT
31529111 TTATTAATTTAGATAGTAAAA
1 TTATTAATTTAGATAGTAAAA
31529132 TTATTAATTTAGATAGTAAAA
1 TTATTAATTTAGATAGTAAAA
31529153 AAATTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (21 bp):
TTATTAATTTAGATAGTAAAA
Found at i:31529164 original size:22 final size:21
Alignment explanation
Indices: 31529113--31529162 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
31529103 AATTCAATTT
**
31529113 ATTAATTTAGATAGTAAAATT
1 ATTAATTTAGATAGTAAAAAA
31529134 ATTAATTTAGATAGTAAAAAA
1 ATTAATTTAGATAGTAAAAAA
*
31529155 ATTTATTT
1 ATTAATTT
31529163 TAAGCAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (21 bp):
ATTAATTTAGATAGTAAAAAA
Found at i:31530492 original size:21 final size:21
Alignment explanation
Indices: 31530463--31530502 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
31530453 CAATCGATTT
*
31530463 AAATTAGTTACAATCAATTCA
1 AAATCAGTTACAATCAATTCA
31530484 AAATCAGTTACAATCAATT
1 AAATCAGTTACAATCAATT
31530503 TAAGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (21 bp):
AAATCAGTTACAATCAATTCA
Found at i:31530535 original size:20 final size:21
Alignment explanation
Indices: 31530451--31530530 Score: 76
Period size: 20 Copynumber: 3.9 Consensus size: 21
31530441 TCAAATGTGC
*
31530451 TACAATCGATTTAAAT-TAGT
1 TACAATCAATTTAAATCTAGT
*
31530471 TACAATCAATTCAAAATC-AGT
1 TACAATCAATT-TAAATCTAGT
* *
31530492 TACAATCAATTTAAGTTTA-T
1 TACAATCAATTTAAATCTAGT
* *
31530512 TTCAATCGATTTAAATCTA
1 TACAATCAATTTAAATCTA
31530531 TTTCATATTT
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
20 29 0.60
21 19 0.40
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (21 bp):
TACAATCAATTTAAATCTAGT
Found at i:31548294 original size:74 final size:69
Alignment explanation
Indices: 31548165--31548331 Score: 160
Period size: 74 Copynumber: 2.3 Consensus size: 69
31548155 GTGGTGGATG
** * * * *
31548165 AATATAACTTTTTGTATGCCATAG-AGGGTTGTCACTTTTTGCATGTCTTAATGGGT-TGGGTCC
1 AATATAACTTTTTGTATGTAATTGCA-AGTTGTCACTTTTTGCATATCGTAATGGGTGT-GGT--
31548228 AGTGGTGAACT
62 --T-GTGAACT
* *
31548239 AATATCACTTTTTGTATGTAATTGCAAGTTGTCACTTTTTGTATAT-GTAATTGGGTGTGGTTGT
1 AATATAACTTTTTGTATGTAATTGCAAGTTGTCACTTTTTGCATATCGTAA-TGGGTGTGGTTGT
*
31548303 GAAGT
65 GAACT
31548308 AATATAACTTTTTGTATGTAATTG
1 AATATAACTTTTTGTATGTAATTG
31548332 TAGGTTGATA
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
69 29 0.36
70 1 0.01
73 3 0.04
74 45 0.56
75 2 0.03
ACGTcount: A:0.24, C:0.10, G:0.23, T:0.44
Consensus pattern (69 bp):
AATATAACTTTTTGTATGTAATTGCAAGTTGTCACTTTTTGCATATCGTAATGGGTGTGGTTGTG
AACT
Found at i:31559745 original size:25 final size:26
Alignment explanation
Indices: 31559685--31559754 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
31559675 AACTCGAGAA
*
31559685 TTCTCTAGAAAGCCTTTGTGGTGAAC
1 TTCTCTAGAAAACCTTTGTGGTGAAC
* * *
31559711 TT-TTTGGAAAACCATTGTGGTG-AC
1 TTCTCTAGAAAACCTTTGTGGTGAAC
31559735 TTCTCTAGAAAACCTTTGTG
1 TTCTCTAGAAAACCTTTGTG
31559755 AGGAATTATC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 4 0.11
25 30 0.83
26 2 0.06
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.37
Consensus pattern (26 bp):
TTCTCTAGAAAACCTTTGTGGTGAAC
Found at i:31573921 original size:27 final size:27
Alignment explanation
Indices: 31573891--31573942 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
31573881 TCAACATGTA
31573891 ACCATGTACTCAATTTGGCCAAATAAT
1 ACCATGTACTCAATTTGGCCAAATAAT
31573918 ACCATGTACTCAATTTGGCCAAATA
1 ACCATGTACTCAATTTGGCCAAATA
31573943 CTAATCACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.29
Consensus pattern (27 bp):
ACCATGTACTCAATTTGGCCAAATAAT
Found at i:31574635 original size:39 final size:39
Alignment explanation
Indices: 31574592--31574764 Score: 186
Period size: 39 Copynumber: 4.4 Consensus size: 39
31574582 CATGGCATGA
* * *
31574592 AAGTGCTATCAAGAGTACCAAAGTACAATAGGGGCACGT
1 AAGTGCTATCAGGGGTACCAAAGTACAACAGGGGCACGT
* * * *
31574631 AAGTGCTATCAGGGGTACCAAAGTACAACATGAGAATGT
1 AAGTGCTATCAGGGGTACCAAAGTACAACAGGGGCACGT
* * * *
31574670 AAGTGCGATCAGGGGTACCGAAGTACGATAGGGGCACGT
1 AAGTGCTATCAGGGGTACCAAAGTACAACAGGGGCACGT
* ** *
31574709 AAGTG-TGATCAGGGGTACCGAAGTATGACAAGGGCACGT
1 AAGTGCT-ATCAGGGGTACCAAAGTACAACAGGGGCACGT
*
31574748 AAGTGCAATCAGGGGTA
1 AAGTGCTATCAGGGGTA
31574765 TAATTATACA
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (39 bp):
AAGTGCTATCAGGGGTACCAAAGTACAACAGGGGCACGT
Found at i:31574654 original size:20 final size:20
Alignment explanation
Indices: 31574591--31574654 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
31574581 CCATGGCATG
* *
31574591 AAAGTGCTATCAAGAGTACC
1 AAAGTGCTATCAGGGGTACC
* * * *
31574611 AAAGTACAAT-AGGGGCACG
1 AAAGTGCTATCAGGGGTACC
*
31574630 TAAGTGCTATCAGGGGTACC
1 AAAGTGCTATCAGGGGTACC
31574650 AAAGT
1 AAAGT
31574655 ACAACATGAG
Statistics
Matches: 31, Mismatches: 12, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
19 12 0.39
20 19 0.61
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.19
Consensus pattern (20 bp):
AAAGTGCTATCAGGGGTACC
Found at i:31574698 original size:20 final size:20
Alignment explanation
Indices: 31574670--31574733 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
31574660 ATGAGAATGT
*
31574670 AAGTGCGATCAGGGGTACCG
1 AAGTACGATCAGGGGTACCG
*
31574690 AAGTACGAT-AGGGGCA-CG
1 AAGTACGATCAGGGGTACCG
**
31574708 TAAGTGTGATCAGGGGTACCG
1 -AAGTACGATCAGGGGTACCG
31574729 AAGTA
1 AAGTA
31574734 TGACAAGGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 2 0.06
19 13 0.37
20 18 0.51
21 2 0.06
ACGTcount: A:0.30, C:0.16, G:0.38, T:0.17
Consensus pattern (20 bp):
AAGTACGATCAGGGGTACCG
Found at i:31574712 original size:19 final size:21
Alignment explanation
Indices: 31574668--31574762 Score: 67
Period size: 20 Copynumber: 4.8 Consensus size: 21
31574658 ACATGAGAAT
* *
31574668 GTAAGTGCGATCAGGGGTACC
1 GTAAGTACGATCAGGGGCACC
31574689 G-AAGTACGAT-AGGGGCA-C
1 GTAAGTACGATCAGGGGCACC
** *
31574707 GTAAGTGTGATCAGGGGTACC
1 GTAAGTACGATCAGGGGCACC
* *
31574728 G-AAGTATGA-CAAGGGCA-C
1 GTAAGTACGATCAGGGGCACC
* *
31574746 GTAAGTGCAATCAGGGG
1 GTAAGTACGATCAGGGG
31574763 TATAATTATA
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
18 4 0.07
19 24 0.42
20 26 0.46
21 3 0.05
ACGTcount: A:0.29, C:0.16, G:0.38, T:0.17
Consensus pattern (21 bp):
GTAAGTACGATCAGGGGCACC
Found at i:31574742 original size:20 final size:19
Alignment explanation
Indices: 31574679--31574738 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
31574669 TAAGTGCGAT
*
31574679 CAGGGGTACCGAAGTACGA
1 CAGGGGTACCGAAGTATGA
* * *
31574698 TAGGGGCA-CGTAAGTGTGA
1 CAGGGGTACCG-AAGTATGA
31574717 TCAGGGGTACCGAAGTATGA
1 -CAGGGGTACCGAAGTATGA
31574737 CA
1 CA
31574739 AGGGCACGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
18 2 0.06
19 14 0.45
20 13 0.42
21 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.37, T:0.17
Consensus pattern (19 bp):
CAGGGGTACCGAAGTATGA
Found at i:31574750 original size:78 final size:78
Alignment explanation
Indices: 31574592--31574764 Score: 213
Period size: 78 Copynumber: 2.2 Consensus size: 78
31574582 CATGGCATGA
* * *
31574592 AAGTGCTATCAAGAGTACCAAAGTACAATAGGGGCACGTAAGTGCTATCAGGGGTACCAAAGTAC
1 AAGTGCAATCAGGGGTACCAAAGTACAATAGGGGCACGTAAGTGCTATCAGGGGTACCAAAGTAC
* *
31574657 AACATGAGAATGT
66 AACAAGAGAACGT
* * * *
31574670 AAGTGCGATCAGGGGTACCGAAGTACGATAGGGGCACGTAAGTG-TGATCAGGGGTACCGAAGTA
1 AAGTGCAATCAGGGGTACCAAAGTACAATAGGGGCACGTAAGTGCT-ATCAGGGGTACCAAAGTA
** * *
31574734 TGACAAGGGCACGT
65 CAACAAGAGAACGT
31574748 AAGTGCAATCAGGGGTA
1 AAGTGCAATCAGGGGTA
31574765 TAATTATACA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
77 1 0.01
78 80 0.99
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (78 bp):
AAGTGCAATCAGGGGTACCAAAGTACAATAGGGGCACGTAAGTGCTATCAGGGGTACCAAAGTAC
AACAAGAGAACGT
Found at i:31575056 original size:19 final size:19
Alignment explanation
Indices: 31575029--31575067 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
31575019 CCCTGTTTTA
*
31575029 CCCTCTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTATGTTC
*
31575048 CCCTTTGCCTCTTATGTTC
1 CCCTCTGCCTCTTATGTTC
31575067 C
1 C
31575068 TTCCTTCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.03, C:0.44, G:0.10, T:0.44
Consensus pattern (19 bp):
CCCTCTGCCTCTTATGTTC
Found at i:31578700 original size:16 final size:16
Alignment explanation
Indices: 31578679--31578720 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
31578669 TTATTAAATT
*
31578679 ATATATTTTAATTATA
1 ATATATTTTAATAATA
31578695 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
31578710 AT-TATGTTTAA
1 ATATAT-TTTAA
31578721 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:31578705 original size:15 final size:15
Alignment explanation
Indices: 31578670--31578711 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
31578660 TTAAGAATTT
*
31578670 TATTAAATTAT-ATA
1 TATTTAATTATAATA
31578684 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
31578698 TATTTAATAATAAT
1 TATTTAATTATAAT
31578712 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:31578959 original size:16 final size:16
Alignment explanation
Indices: 31578934--31578987 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
31578924 TTGATTTGCT
31578934 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
31578950 ATTGCACCTCTATTCC
1 ATTACACCTCTATTCC
* *
31578966 ATTACGCCTCTAATCC
1 ATTACACCTCTATTCC
*
31578982 AATACA
1 ATTACA
31578988 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.28, C:0.35, G:0.04, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:31585877 original size:26 final size:25
Alignment explanation
Indices: 31585843--31585902 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
31585833 TTTTAGCAAA
* *
31585843 GGTAAAATCGTAAAAAATTTTACTGG
1 GGTAAAATCAT-AAAAATTTTACCGG
* *
31585869 GGTAGAATCATCAAAATTTTACCGG
1 GGTAAAATCATAAAAATTTTACCGG
31585894 GGCTAAAAT
1 GG-TAAAAT
31585903 AAAGATGAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (25 bp):
GGTAAAATCATAAAAATTTTACCGG
Found at i:31589172 original size:38 final size:38
Alignment explanation
Indices: 31589073--31589190 Score: 191
Period size: 38 Copynumber: 3.0 Consensus size: 38
31589063 GGCGAATGAG
31589073 ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
1 ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
*
31589111 ATAAGAACCCTTTGAATAGGTAGTGTTAGAACTATACTATGT
1 ATAAG----TTTTGAATAGGTAGTGTTAGAACTATACTATGT
31589153 ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
1 ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
31589191 GCCAAGTGTG
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
38 37 0.50
42 37 0.50
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (38 bp):
ATAAGTTTTGAATAGGTAGTGTTAGAACTATACTATGT
Found at i:31590267 original size:29 final size:29
Alignment explanation
Indices: 31590235--31590308 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
31590225 TTTTTAAAAG
*
31590235 GAAGCCTTTGTGGTGATCTCTGTTAT-ATA
1 GAAGCCATTGTGGTGATCTCTGTTATGA-A
* ** * *
31590264 GAAGCCCTTGTGACGATCTTTGTTATGAG
1 GAAGCCATTGTGGTGATCTCTGTTATGAA
31590293 GAAGCCATTGTGGTGA
1 GAAGCCATTGTGGTGA
31590309 CCTGATCGGC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
29 35 0.97
30 1 0.03
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (29 bp):
GAAGCCATTGTGGTGATCTCTGTTATGAA
Found at i:31592883 original size:18 final size:18
Alignment explanation
Indices: 31592862--31592910 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
31592852 TCATTTTTAG
*
31592862 CAACTTTTTCTTCAGCAA
1 CAACTTCTTCTTCAGCAA
* * *
31592880 CAACTTCCTCTCCTGCAA
1 CAACTTCTTCTTCAGCAA
31592898 CAACTTCTTCTTC
1 CAACTTCTTCTTC
31592911 TACAGCATCA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.37, G:0.04, T:0.37
Consensus pattern (18 bp):
CAACTTCTTCTTCAGCAA
Found at i:31592907 original size:21 final size:21
Alignment explanation
Indices: 31592883--31592925 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
31592873 TCAGCAACAA
* *
31592883 CTTCCTCTCCTGCAACAACTT
1 CTTCCTCTACAGCAACAACTT
* *
31592904 CTTCTTCTACAGCATCAACTT
1 CTTCCTCTACAGCAACAACTT
31592925 C
1 C
31592926 CTTCTCAGCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.40, G:0.05, T:0.35
Consensus pattern (21 bp):
CTTCCTCTACAGCAACAACTT
Found at i:31592934 original size:18 final size:19
Alignment explanation
Indices: 31592869--31592936 Score: 68
Period size: 18 Copynumber: 3.6 Consensus size: 19
31592859 TAGCAACTTT
*
31592869 TTCTTCAGCAACAACTTCC
1 TTCTACAGCAACAACTTCC
* *
31592888 -TCTCCTGCAACAACTTCTTC
1 TTCTACAGCAACAACTTC--C
*
31592908 TTCTACAGCATCAACTTCC
1 TTCTACAGCAACAACTTCC
31592927 TTCT-CAGCAA
1 TTCTACAGCAA
31592937 TAGTGTCCTC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
18 20 0.50
19 5 0.12
20 1 0.03
21 14 0.35
ACGTcount: A:0.25, C:0.37, G:0.06, T:0.32
Consensus pattern (19 bp):
TTCTACAGCAACAACTTCC
Found at i:31605295 original size:46 final size:46
Alignment explanation
Indices: 31605180--31605347 Score: 214
Period size: 46 Copynumber: 3.7 Consensus size: 46
31605170 GATCGGAGGG
* * * *
31605180 TGCCATGGTGTCTTTCAACCATGGTCTTATTTATTTTCCA-CTTGC
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTAATTTTCCATCATGT
*
31605225 TGCCATAGTGTCTTTCAACCATGGTCTTATTAATTTTCCATCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTAATTTTCCATCATGT
** *
31605271 TGCCATAGTGTCTTTC-ACCTATGGTCTTATCCATTTTCCGTCATGT
1 TGCCATAGTGTCTTTCAACC-ATGGTCTTATTAATTTTCCATCATGT
* * *
31605317 TGCCATAGCGTCTTTCAACTATGGTATTATT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATT
31605348 CGTTTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
45 41 0.38
46 65 0.60
47 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.43
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTATTAATTTTCCATCATGT
Found at i:31605366 original size:91 final size:91
Alignment explanation
Indices: 31605180--31605390 Score: 221
Period size: 91 Copynumber: 2.3 Consensus size: 91
31605170 GATCGGAGGG
* ** * *
31605180 TGCCATGGTGTCTTTCAACC-ATGGTCTTATTTATTTTCCACTTGCTGCCATAGTGTCTTTCAAC
1 TGCCATAGTGTCTTTC-ACCTATGGTCTTATCCATTTTCCACATGCTGCCATAGCGTCTTTCAAC
* * *
31605244 CATGGTCTTATTAATTTTCCATCGTGT
65 CATGGTATTATTAAGTTTCCATCGTGA
* *
31605271 TGCCATAGTGTCTTTCACCTATGGTCTTATCCATTTTCCGTCATGTTGCCATAGCGTCTTTCAAC
1 TGCCATAGTGTCTTTCACCTATGGTCTTATCCATTTTCC-ACATGCTGCCATAGCGTCTTTCAAC
* * * *
31605336 TATGGTATTATT-CGTTT-GATTTGTGA
65 CATGGTATTATTAAGTTTCCA-TCGTGA
** *
31605362 TGCCATAGCCTCTTTCAGCTATGGTCTTA
1 TGCCATAGTGTCTTTCACCTATGGTCTTA
31605391 CTCGATAAAA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
90 4 0.04
91 65 0.65
92 31 0.31
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.43
Consensus pattern (91 bp):
TGCCATAGTGTCTTTCACCTATGGTCTTATCCATTTTCCACATGCTGCCATAGCGTCTTTCAACC
ATGGTATTATTAAGTTTCCATCGTGA
Found at i:31605405 original size:45 final size:45
Alignment explanation
Indices: 31605317--31605484 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 45
31605307 TCCGTCATGT
* * * * * * *
31605317 TGCCATAGCGTCTTTCAACTATGGTATTATTCGTTTGATTTGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATTGTGA
* * *
31605362 TGCCATAGCCTCTTTCAGCTATGGTCTTACTCGATAAAATTGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATTGTGA
* * *
31605407 TTCCATAACGTCTTTCAGTTATGGTCTTACTCGATAGAATCGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATTGTGA
* *
31605452 TGCAATAACGTCTTTCAGCTATGGCCTTACTCG
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCG
31605485 TTTCTAGAAT
Statistics
Matches: 105, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 105 1.00
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (45 bp):
TGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATTGTGA
Found at i:31606969 original size:56 final size:56
Alignment explanation
Indices: 31606909--31607057 Score: 221
Period size: 56 Copynumber: 2.7 Consensus size: 56
31606899 TTTAAGGATG
* *
31606909 CCTTTGTGGCAAAACT-GTAGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
1 CCTTTGTGG-AAAAATAATAGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
*
31606965 CCTTTGTGGAAAAATAATGGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
1 CCTTTGTGGAAAAATAATAGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
* *
31607021 CC-TTATGGAAAAATAATGGAAAGGTAAGCCTTTGTGG
1 CCTTTGTGGAAAAATAATAGAAAGGTAAGCC-TTGTGG
31607058 CGAACTTTGT
Statistics
Matches: 87, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
55 32 0.37
56 55 0.63
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (56 bp):
CCTTTGTGGAAAAATAATAGAAAGGTAAGCCTTGTGGAAAACCTATTAACATACAA
Found at i:31606971 original size:28 final size:27
Alignment explanation
Indices: 31606938--31607032 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 27
31606928 GAAAGGTAAG
31606938 CCTTGTGGAAAACCTATTAACATACAA
1 CCTTGTGGAAAACCTATTAACATACAA
* * *
31606965 CCTTTGTGGAAAA-ATAATGGAA-AGGTA-AG
1 CC-TTGTGGAAAACCT-AT-TAACA--TACAA
31606994 CCTTGTGGAAAACCTATTAACATACAA
1 CCTTGTGGAAAACCTATTAACATACAA
*
31607021 CCTTATGGAAAA
1 CCTTGTGGAAAA
31607033 ATAATGGAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
26 2 0.04
27 17 0.32
28 26 0.49
29 6 0.11
30 2 0.04
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (27 bp):
CCTTGTGGAAAACCTATTAACATACAA
Found at i:31607052 original size:28 final size:28
Alignment explanation
Indices: 31606971--31607052 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 28
31606961 ACAACCTTTG
*
31606971 TGGAAAAATAATGGAAAGGTAAGCCTTG
1 TGGAAAAATAATGGAAAGGTAAGCCTTA
* * *
31606999 TGGAAAACCT-AT-TAACA--TACAACCTTA
1 TGGAAAA-ATAATGGAA-AGGTA-AGCCTTA
31607026 TGGAAAAATAATGGAAAGGTAAGCCTT
1 TGGAAAAATAATGGAAAGGTAAGCCTT
31607053 TGTGGCGAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
26 3 0.08
27 17 0.43
28 17 0.43
29 3 0.08
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (28 bp):
TGGAAAAATAATGGAAAGGTAAGCCTTA
Found at i:31607073 original size:29 final size:28
Alignment explanation
Indices: 31607040--31607228 Score: 86
Period size: 27 Copynumber: 6.7 Consensus size: 28
31607030 AAAATAATGG
31607040 AAAGGTAAGCCTTTGTGGCGAACTTTGTT
1 AAAGG-AAGCCTTTGTGGCGAACTTTGTT
* * *
31607069 AAAGGCA-CCTTTTGTGGCAAAACTTTG-G
1 AAAGGAAGCC-TTTGTGGC-GAACTTTGTT
* * *
31607097 AAACGGAAACCTTTGTGGCAAAC-CTGTT
1 AAA-GGAAGCCTTTGTGGCGAACTTTGTT
* ** * *
31607125 AAAGGAAAACCTTTGTGGTAAAAATCTAG--
1 AAAGG-AAGCCTTTGTGG-CGAACT-TTGTT
* * *
31607154 AAGGGTAAGCCTTTGTAGCGAACCTT-TT
1 AAAGG-AAGCCTTTGTGGCGAACTTTGTT
* * * *
31607182 AAAGGATGCCTTTGTGGTGAACCTT-CT
1 AAAGGAAGCCTTTGTGGCGAACTTTGTT
*
31607209 AAAGGACGCCTTTGTGGCGA
1 AAAGGAAGCCTTTGTGGCGA
31607229 GACGCTGAAA
Statistics
Matches: 123, Mismatches: 26, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
27 43 0.35
28 37 0.30
29 40 0.33
30 2 0.02
31 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (28 bp):
AAAGGAAGCCTTTGTGGCGAACTTTGTT
Found at i:31607167 original size:57 final size:56
Alignment explanation
Indices: 31606909--31607187 Score: 214
Period size: 56 Copynumber: 4.9 Consensus size: 56
31606899 TTTAAGGATG
* * * * *
31606909 CCTTTGTGGCAAAACTGTAGAAAGGTAAGCC-TTGTGGAAAACCTATTAACA-TACAA
1 CCTTTGTGG-AAAAATATGGAAAGGTAAGCCTTTGTGGCAAACCTATTAA-AGGACAA
* *
31606965 CCTTTGTGGAAAAATAATGGAAAGGTAAGCC-TTGTGGAAAACCTATTAACA-TACAA
1 CCTTTGTGGAAAAAT-ATGGAAAGGTAAGCCTTTGTGGCAAACCTATTAA-AGGACAA
* * * *
31607021 CC-TTATGGAAAAATAATGGAAAGGTAAGCCTTTGTGGCGAACTTTGTTAAAGG-C-A
1 CCTTTGTGGAAAAAT-ATGGAAAGGTAAGCCTTTGTGGCAAAC-CTATTAAAGGACAA
* * * * *
31607076 CCTTTTGTGGCAAAACTTTGGAAACGG-AAACCTTTGTGGCAAACCTGTTAAAGGAAAA
1 CC-TTTGTGG-AAAAATATGGAAA-GGTAAGCCTTTGTGGCAAACCTATTAAAGGACAA
* * * * * *
31607134 CCTTTGTGGTAAAAATCTAGAAGGGTAAGCCTTTGTAGCGAACCTTTTAAAGGA
1 CCTTTGTGG-AAAAATATGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGA
31607188 TGCCTTTGTG
Statistics
Matches: 187, Mismatches: 25, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
55 35 0.19
56 71 0.38
57 71 0.38
58 10 0.05
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (56 bp):
CCTTTGTGGAAAAATATGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGACAA
Found at i:31607203 original size:27 final size:27
Alignment explanation
Indices: 31607162--31607228 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
31607152 AGAAGGGTAA
* * *
31607162 GCCTTTGTAGCGAACCTTTTAAAGGAT
1 GCCTTTGTGGCGAACCTTCTAAAGGAC
*
31607189 GCCTTTGTGGTGAACCTTCTAAAGGAC
1 GCCTTTGTGGCGAACCTTCTAAAGGAC
31607216 GCCTTTGTGGCGA
1 GCCTTTGTGGCGA
31607229 GACGCTGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (27 bp):
GCCTTTGTGGCGAACCTTCTAAAGGAC
Found at i:31608124 original size:24 final size:24
Alignment explanation
Indices: 31608079--31608124 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
31608069 GCTGTGTCGC
*
31608079 AGCCCGCGCCCCAGGCCGTGTGAT
1 AGCCCGCGCCCCAGGCAGTGTGAT
* * *
31608103 AGCCCGTGCCCTAGGCATTGTG
1 AGCCCGCGCCCCAGGCAGTGTG
31608125 CTCCATAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (24 bp):
AGCCCGCGCCCCAGGCAGTGTGAT
Found at i:31618994 original size:8 final size:8
Alignment explanation
Indices: 31618983--31619010 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
31618973 TATTTGATAA
31618983 TTTGCTCT
1 TTTGCTCT
31618991 TTTGCTCT
1 TTTGCTCT
31618999 TTTGCTCT
1 TTTGCTCT
31619007 TTTG
1 TTTG
31619011 TTATAACTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.21, G:0.14, T:0.64
Consensus pattern (8 bp):
TTTGCTCT
Found at i:31627738 original size:53 final size:54
Alignment explanation
Indices: 31627662--31627764 Score: 154
Period size: 53 Copynumber: 1.9 Consensus size: 54
31627652 GCAATGGAAG
* *
31627662 ACCATATTGTGTAAGACCATAACTGGTGGATTATGGCATCATAT-GGGAAGAAT
1 ACCATACTGTGTAAGACCATAACTGGTGGATTATCGCATCATATAGGGAAGAAT
* * *
31627715 ACCATACTGTGTAAGATCGTAACTGGTGGGTTATCGCATCATATAGGGAA
1 ACCATACTGTGTAAGACCATAACTGGTGGATTATCGCATCATATAGGGAA
31627765 AATTAAGGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 39 0.89
54 5 0.11
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (54 bp):
ACCATACTGTGTAAGACCATAACTGGTGGATTATCGCATCATATAGGGAAGAAT
Found at i:31627981 original size:61 final size:61
Alignment explanation
Indices: 31627845--31628045 Score: 210
Period size: 61 Copynumber: 3.3 Consensus size: 61
31627835 GTGTGAGTCT
* * * **
31627845 AGGAAAGCCTTTGTGCAT-AGTCATGGATGTAAAGGAAAACCTTCATGG-AAAAATCTAGAC
1 AGGAAAGCCTTTGTG-GTGAGTAATGGATGTAAAGGAAAACCTTTATGGCAAATCTCTAGAC
* * * *
31627905 AGGAAAGCCTTTGTGGTGAGTAATGGATGTAAAGCACAACCTTTGTGGCAAATCTCTGGAC
1 AGGAAAGCCTTTGTGGTGAGTAATGGATGTAAAGGAAAACCTTTATGGCAAATCTCTAGAC
* * * * * * *
31627966 AGGAAAGCCTATGTGGCGAGTACTAGATGTAAAGGATAGCCTTTATGGCAAATCTCTA-AA
1 AGGAAAGCCTTTGTGGTGAGTAATGGATGTAAAGGAAAACCTTTATGGCAAATCTCTAGAC
*
31628026 ATGAAACGCCTTTGTGGTGA
1 AGGAAA-GCCTTTGTGGTGA
31628046 TCTTTTCCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
59 1 0.01
60 46 0.40
61 69 0.59
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (61 bp):
AGGAAAGCCTTTGTGGTGAGTAATGGATGTAAAGGAAAACCTTTATGGCAAATCTCTAGAC
Found at i:31640465 original size:2 final size:2
Alignment explanation
Indices: 31640458--31640484 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
31640448 TCAGTACATT
31640458 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
31640485 CTCAAATGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31640877 original size:41 final size:41
Alignment explanation
Indices: 31640861--31640981 Score: 206
Period size: 41 Copynumber: 3.0 Consensus size: 41
31640851 CCGAAATGTA
* *
31640861 TCACCGGTATTAAGCCTACTAGACGTAAAGTCTGAATTATT
1 TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGAATTATT
*
31640902 TCACCGGCATCAAGCCTACTAGACGTAAAGTCTGAATTATT
1 TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGAATTATT
*
31640943 TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGTATTA
1 TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGAATTA
31640982 CATCCGATCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (41 bp):
TCACCGGAATCAAGCCTACTAGACGTAAAGTCTGAATTATT
Found at i:31644077 original size:47 final size:47
Alignment explanation
Indices: 31643921--31644070 Score: 237
Period size: 47 Copynumber: 3.2 Consensus size: 47
31643911 ATAGTAATGT
*
31643921 AGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
1 AGATAAACTACCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
* *
31643968 ATATAAACTACCACTTAATAAAATTGTGGACAAGCCACCACTTTTGC
1 AGATAAACTACCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
* * **
31644015 AGATAAACTACCACTTTATAATATTGTGGACAAGCCAACACTTTTAT
1 AGATAAACTACCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
31644062 AGATAAACT
1 AGATAAACT
31644071 GTCACTTCTT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (47 bp):
AGATAAACTACCACTTAATAATATTGTGGACAAGCCACCACTTTTGC
Found at i:31645161 original size:16 final size:17
Alignment explanation
Indices: 31645130--31645168 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
31645120 TCACTCACTT
*
31645130 AAAAGAGAATAAATAAG
1 AAAAGGGAATAAATAAG
31645147 AAAAGGGAA-AAATAAG
1 AAAAGGGAATAAATAAG
31645163 AAAAGG
1 AAAAGG
31645169 AGAGGAGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08
Consensus pattern (17 bp):
AAAAGGGAATAAATAAG
Found at i:31646746 original size:15 final size:15
Alignment explanation
Indices: 31646728--31646779 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
31646718 TACTAAAAAC
31646728 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
31646743 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
31646762 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
31646777 ATT
1 ATT
31646780 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:31647086 original size:14 final size:13
Alignment explanation
Indices: 31647054--31647085 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
31647044 ACATATAAGC
*
31647054 TTTTTTGGGCACT
1 TTTTTTAGGCACT
31647067 TTTTTTAGGCACT
1 TTTTTTAGGCACT
31647080 TTTTTT
1 TTTTTT
31647086 TTTTTAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.09, C:0.12, G:0.16, T:0.62
Consensus pattern (13 bp):
TTTTTTAGGCACT
Found at i:31649343 original size:24 final size:24
Alignment explanation
Indices: 31649312--31649369 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
31649302 CTAAACTAAT
31649312 CAAAGTTTAATTAAAACAAATAAA
1 CAAAGTTTAATTAAAACAAATAAA
* *
31649336 CAAAGTTTGATTGAAACAAATAAA
1 CAAAGTTTAATTAAAACAAATAAA
* *
31649360 TAGAGTTTAA
1 CAAAGTTTAA
31649370 CTGGAAGACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (24 bp):
CAAAGTTTAATTAAAACAAATAAA
Found at i:31656483 original size:12 final size:12
Alignment explanation
Indices: 31656466--31656490 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31656456 ATCGTAAAGA
31656466 ATTGATAAATTG
1 ATTGATAAATTG
31656478 ATTGATAAATTG
1 ATTGATAAATTG
31656490 A
1 A
31656491 ATATGATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (12 bp):
ATTGATAAATTG
Found at i:31661083 original size:21 final size:20
Alignment explanation
Indices: 31661055--31661093 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
31661045 GGAAAGTTGA
31661055 TTCCTTTGAATCAATTGTCT
1 TTCCTTTGAATCAATTGTCT
*
31661075 TTCCGTTTGAATCGATTGT
1 TTCC-TTTGAATCAATTGT
31661094 TTTTTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (20 bp):
TTCCTTTGAATCAATTGTCT
Found at i:31661193 original size:105 final size:105
Alignment explanation
Indices: 31660999--31661198 Score: 276
Period size: 105 Copynumber: 1.9 Consensus size: 105
31660989 CGTTTTTCTA
* *
31660999 TTAGAATCGATTCATTATTGTTATTGATGTATTTGTGGAAAATGTTGGAAAGTTGATTCCTTTGA
1 TTAGAATCGATTCATTATTGTTATTGATGTATTTGTAGAAAATGTTGGAAAATTGATTCCTTTGA
* *
31661064 ATCAATTGTCTTTCCGTTTGAATCGATTGTTTTTTTTTTG
66 ATCAATTGTCTTTCCATTTAAATCGATTGTTTTTTTTTTG
* * * *
31661104 TTAGAATTGATTCCTTATTGTTATTGATGTATTTGTAG-AAATGGTTGGAAAATTGCTTCTTTTG
1 TTAGAATCGATTCATTATTGTTATTGATGTATTTGTAGAAAAT-GTTGGAAAATTGATTCCTTTG
** **
31661168 AATTGATTGTCTTTGTATTTAAATCGATTGT
65 AATCAATTGTCTTTCCATTTAAATCGATTGT
31661199 CTTTCTAGTT
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
104 4 0.05
105 78 0.95
ACGTcount: A:0.24, C:0.07, G:0.19, T:0.49
Consensus pattern (105 bp):
TTAGAATCGATTCATTATTGTTATTGATGTATTTGTAGAAAATGTTGGAAAATTGATTCCTTTGA
ATCAATTGTCTTTCCATTTAAATCGATTGTTTTTTTTTTG
Found at i:31662064 original size:26 final size:25
Alignment explanation
Indices: 31662036--31662109 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 25
31662026 CAAATCCCTA
*
31662036 TTTAGCCCTTAGTAAAATTTTGATGAT
1 TTTA-CCC-TAGTAAAATTTTGATAAT
*
31662063 TTTACCCTCGATAAAATTTTGATAAT
1 TTTACCCTAG-TAAAATTTTGATAAT
*
31662089 TTTACCCTGGTAAAATTTTGA
1 TTTACCCTAGTAAAATTTTGA
31662110 GAAAATATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
25 13 0.30
26 26 0.60
27 4 0.09
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (25 bp):
TTTACCCTAGTAAAATTTTGATAAT
Found at i:31662108 original size:25 final size:26
Alignment explanation
Indices: 31662047--31662109 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
31662037 TTAGCCCTTA
*
31662047 GTAAAATTTTGATGATTTTACCCTCG
1 GTAAAATTTTGATAATTTTACCCTCG
*
31662073 ATAAAATTTTGATAATTTTACCCT-G
1 GTAAAATTTTGATAATTTTACCCTCG
31662098 GTAAAATTTTGA
1 GTAAAATTTTGA
31662110 GAAAATATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 12 0.35
26 22 0.65
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (26 bp):
GTAAAATTTTGATAATTTTACCCTCG
Found at i:31665781 original size:5 final size:5
Alignment explanation
Indices: 31665771--31665796 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
31665761 CTCAACTAAC
31665771 AAATA AAATA AAATA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA A
31665797 TAAAAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:31670212 original size:9 final size:9
Alignment explanation
Indices: 31670190--31670235 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
31670180 CACAAAATTG
31670190 ATTGTT-TT
1 ATTGTTATT
31670198 -TTGTTATT
1 ATTGTTATT
31670206 ATTGTTATT
1 ATTGTTATT
*
31670215 ATTATTATT
1 ATTGTTATT
*
31670224 ATTATTATT
1 ATTGTTATT
31670233 ATT
1 ATT
31670236 AAGGTTTGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
7 5 0.14
8 2 0.06
9 28 0.80
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.70
Consensus pattern (9 bp):
ATTGTTATT
Found at i:31670216 original size:3 final size:3
Alignment explanation
Indices: 31670201--31670236 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
31670191 TTGTTTTTTG
*
31670201 TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
31670237 AGGTTTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:31674488 original size:8 final size:8
Alignment explanation
Indices: 31674477--31674511 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
31674467 ATCAAAAATC
31674477 AAAAAG-A
1 AAAAAGAA
31674484 AAAAAGAA
1 AAAAAGAA
31674492 AAAAAGAAA
1 AAAAAG-AA
31674501 AAAAAGAA
1 AAAAAGAA
31674509 AAA
1 AAA
31674512 TCAAAATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 6 0.23
8 12 0.46
9 8 0.31
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:31674488 original size:15 final size:14
Alignment explanation
Indices: 31674477--31674511 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
31674467 ATCAAAAATC
31674477 AAAAAGAAAAAAGAA
1 AAAAAGAAAAAA-AA
31674492 AAAAAGAAAAAAAA
1 AAAAAGAAAAAAAA
31674506 GAAAAA
1 -AAAAA
31674512 TCAAAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAA
Found at i:31674502 original size:9 final size:9
Alignment explanation
Indices: 31674483--31674511 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
31674473 AATCAAAAAG
31674483 AAAAAAG-A
1 AAAAAAGAA
31674491 AAAAAAGAA
1 AAAAAAGAA
31674500 AAAAAAGAA
1 AAAAAAGAA
31674509 AAA
1 AAA
31674512 TCAAAATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.35
9 13 0.65
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:31677162 original size:132 final size:132
Alignment explanation
Indices: 31676725--31677224 Score: 756
Period size: 131 Copynumber: 3.8 Consensus size: 132
31676715 TCGGTGAAAT
* *
31676725 CACAAGTCTTATGTCCCTGGTCAGCAGTGGAGTAGGATGGAAATTACAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * *
31676790 CAGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTGCCCT-AGGAGTAGGGAAACAAATTTAA
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTCAGGAGTAGGGAAACAGATTTAA
31676854 GC
131 GC
* *
31676856 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTAGAAATTATAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * *
31676921 CAGTAGCGGAGCAGATCGAAGAAGACGAATCTTATCTTCCC-CAAGAGTAGGGAAACAGATTTAA
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTCAGGAGTAGGGAAACAGATTTAA
*
31676985 GT
131 GC
* *
31676987 CACAAGTCCTATGTCCCTAGTCAGCAGTGGAGTAGGTTGGAAATTACAAATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* *
31677052 CAATAGCGGAGCAGATCGAATACGGCGAATCTTATCTTCCCTCAGGAGTATGGAAACAGATTTAA
66 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTCAGGAGTAGGGAAACAGATTTAA
31677117 GC
131 GC
* *
31677119 CACAAGTCCTATGTCCCTGGTCAACAGTGGAGTAGGTTGGAAATTACAGATCTTATCTCCCTAAG
1 CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
* * * *
31677184 CAATAGTGGAGCTA-ATCGAAAATGGTGAATCTTATC-TCCCT
66 CAATAGCGGAGC-AGATCGAAGACGGCGAATCTTATCTTCCCT
31677225 GAGATTACAG
Statistics
Matches: 336, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
131 222 0.66
132 113 0.34
133 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
CACAAGTCCTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTCAGGAGTAGGGAAACAGATTTAA
GC
Found at i:31677259 original size:44 final size:41
Alignment explanation
Indices: 31677212--31677980 Score: 359
Period size: 44 Copynumber: 17.8 Consensus size: 41
31677202 AAAATGGTGA
*
31677212 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGC-AG
* * * **
31677254 TAATCTTATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGG
1 --ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-GCA-G
* * * * * *
31677300 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * *
31677341 GTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA-G
* * * * * **
31677383 ATCCTATCTCCTTGA-AGTTATAGTGGAGTAGATTAAAATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT-GAA-GCA-G
* * * * * *
31677427 ATCTTATCTCTCTGA-ATTTACAGTAGAGTAGATCGCATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * * ** *
31677468 GTCTTATCTCCTTGAGGTTACAGTGGATTAGATCGAAGAATTTCAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-----CAG
31677514 ATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCCAGAG
1 ATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAG-C--AG
* * * *
31677558 ATCTTATCTCCTTGAAATTACAGCGGAGTAGATTGAAGCTAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGC-AG
* * * **
31677600 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGG
1 --ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-GCA-G
** * * * * *
31677646 ATCTTATCTCTTTGA-ATTTACAGTAGAGTAGATCGCATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * *
31677687 TTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA-G
* * * * * **
31677729 ATCCTATCTCCCTGA-AGTTATAGTGAAGTAGATTAAAATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT-GAA-GCA-G
* * * * * *
31677773 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * * **
31677814 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-----CAG
31677860 ATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCCAGAG
1 ATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAG-C--AG
* * * *
31677904 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGACACT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CA-G
* *
31677947 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT
31677981 AAAATAAAAG
Statistics
Matches: 546, Mismatches: 137, Indels: 85
0.71 0.18 0.11
Matches are distributed among these distances:
41 124 0.23
42 64 0.12
43 40 0.07
44 239 0.44
45 6 0.01
46 71 0.13
47 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (41 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAG
Found at i:31677441 original size:127 final size:129
Alignment explanation
Indices: 31677213--31677490 Score: 454
Period size: 127 Copynumber: 2.2 Consensus size: 129
31677203 AAATGGTGAA
* *
31677213 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCTTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTACTAATCCTATCTCCTTGAGATTACA
*
31677278 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
31677342 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-ACT-ATCCTATCTCCTTGA-AGTTAT
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTACTAATCCTATCTCCTTGAGA-TTAC
* *
31677404 AGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGG
65 AGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
31677469 TCTTATCTCCTTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
31677491 TGGATTAGAT
Statistics
Matches: 140, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
126 1 0.01
127 99 0.71
128 2 0.01
129 38 0.27
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTACTAATCCTATCTCCTTGAGATTACA
GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
Found at i:31677547 original size:173 final size:172
Alignment explanation
Indices: 31677337--31677898 Score: 665
Period size: 173 Copynumber: 3.2 Consensus size: 172
31677327 GTAGATCGCA
*
31677337 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTT
31677402 ATAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCA
66 ATAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAA-TTACAGTAGAGTAGATCGCATCA
*
31677467 GGTCTTATCTCCTTGAGGTTACAGTGGATTAGATCGAAGAATT
130 GGTCTTATCTCCTTGAGGTTACAGTGGAGTAGATCGAAGAATT
* ** *
31677510 TCAGATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCTTGAA
1 TCAGATCTTATCTCCCTGA-GATTACAGCGGAGCAGATTGAAG-CA-CTATCCTATCTCCTTGAA
* * * ** * * * * ** *
31677574 ATTACAGCGGAGTAGATTGAAGCT--AGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTA
63 GTTATAGTGGAGTAGATT-AAAATAAAG-GATCTTATCTCTCTGA-ATTACAGTAGAGTAGA-TC
** * * ** * *
31677637 AAATAAAGGATCTTATCTCTTTGAATTTACAGTAGAGTAGATC---GCA--
124 GCAT-CAGG-TCTTATCTCCTTGAGGTTACAGTGGAGTAGATCGAAGAATT
* *
31677683 TCAGTTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTT
*
31677748 ATAGTGAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
66 ATAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAA-TTACAGTAGAGTAGATCGCATCA
* *
31677813 GGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATT
130 GGTCTTATCTCCTTGAGGTTACAGTGGAGTAGATCGAAGAATT
*
31677856 TCAGATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGC
1 TCAGATCTTATCTCCCTGA-GATTACAGCGGAGCAGATTGAAGC
31677899 CAGAGATCTT
Statistics
Matches: 313, Mismatches: 57, Indels: 38
0.77 0.14 0.09
Matches are distributed among these distances:
168 27 0.09
169 3 0.01
170 7 0.02
171 55 0.18
172 5 0.02
173 115 0.37
174 6 0.02
175 57 0.18
176 7 0.02
177 3 0.01
178 28 0.09
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (172 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTT
ATAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAATTACAGTAGAGTAGATCGCATCAG
GTCTTATCTCCTTGAGGTTACAGTGGAGTAGATCGAAGAATT
Found at i:31677645 original size:219 final size:214
Alignment explanation
Indices: 31677299--31677709 Score: 590
Period size: 219 Copynumber: 1.9 Consensus size: 214
31677289 TAAAATAAAG
* * * * *
31677299 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAACCAGGTCTTATCTCCCTGAAATTACAG
* * *
31677364 CGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTTATAGTGGAGTAGATTAAAATAAAGGAT
66 CGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGAT
* *
31677429 CTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTTACAGTGG
131 CTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGG
31677494 ATTAGATCGAAGAATTTCA
196 ATTAGATCGAAGAATTTCA
* * * *
31677513 GATCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCTTGAAATTA
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAA-CCAG-G-TCTTATCTCCCTGAAATTA
* * *
31677578 CAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTG-AGATTACAGTGGAGCGGATTAAAATA
63 CAGCGGAGCAGATTGAAGC-ACT-ATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATA
* *
31677642 AAGGATCTTATCTCTTTGAATTTACAGTAGAGTAGATCGCATCAGTTCTTATCTCCCTGAGATTA
125 AAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
31677707 CAG
190 CAG
31677710 CGGAGCAGAT
Statistics
Matches: 172, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
214 32 0.19
215 3 0.02
216 1 0.01
217 35 0.20
218 4 0.02
219 97 0.56
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (214 bp):
GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGAACCAGGTCTTATCTCCCTGAAATTACAG
CGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGAT
CTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGG
ATTAGATCGAAGAATTTCA
Found at i:31677775 original size:127 final size:129
Alignment explanation
Indices: 31677513--31677841 Score: 421
Period size: 127 Copynumber: 2.5 Consensus size: 129
31677503 AAGAATTTCA
* * * * * * * * *
31677513 GATCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCTTGAAATTA
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCAG-G-TCTTATCTCCCTGAGATTA
* * * *
31677578 CAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAA
63 CAGCGGAGCAGATTGAAGCTACTAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTAAAATAA
31677643 AG
128 AG
* * *
31677645 GATCTTATCTCTTTGAATTTACAGTAGAGTAGATCGCATCAGTTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
* *
31677710 CGGAGCAGATTGAAGC-ACT-ATCCTATCTCCCTGA-AGTTATAGTGAAGTAGATTAAAATAAAG
66 CGGAGCAGATTGAAGCTACTAATCCTATCTCCCTGAGA-TTACAGTGAAGCAGATTAAAATAAAG
*
31677772 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
*
31677837 TGGAG
66 CGGAG
31677842 TAGACCGAAG
Statistics
Matches: 173, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
126 1 0.01
127 102 0.59
128 2 0.01
129 35 0.20
131 3 0.02
132 30 0.17
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (129 bp):
GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
CGGAGCAGATTGAAGCTACTAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTAAAATAAAG
Found at i:31677798 original size:346 final size:346
Alignment explanation
Indices: 31677212--31678059 Score: 1477
Period size: 346 Copynumber: 2.5 Consensus size: 346
31677202 AAAATGGTGA
* * *
31677212 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCTTGAGATTAC
1 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
*
31677277 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGG
*
31677342 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCTTGAAGTTATAGT
131 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
* *
31677407 GGAGTAGATTAAAATAAAGGATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGGTCT
196 GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
* * *
31677472 TATCTCCTTGAGGTTACAGTGGATTAGATCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
261 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
31677537 TGGAGCAGATTGAAGCCAGAG
326 TGGAGCAGATTGAAGCCAGAG
* *
31677558 ATCTTATCTCCTTGAAATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
31677623 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAATTTACAGTAGAGTAGATCGCATCAGT
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGG
31677688 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
131 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
31677753 GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
196 GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
31677818 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
261 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
31677883 TGGAGCAGATTGAAGCCAGAG
326 TGGAGCAGATTGAAGCCAGAG
* *
31677904 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGAC-ACT-ATCCTATCTCCCTGA-AGTT
1 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAG-CTAGTAATCCTATCTCCCTGAGA-TT
* *
31677966 ACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATTA
64 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCA
* *
31678031 GGTCTTATCTCCCTGAGGTTACAGTGGAG
129 GGTCTTATCTCCCTGAGATTACAGCGGAG
31678060 TAGACCGAAG
Statistics
Matches: 476, Mismatches: 24, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
344 1 0.00
345 105 0.22
346 369 0.78
347 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (346 bp):
ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
TGGAGCAGATTGAAGCCAGAG
Found at i:31677984 original size:218 final size:217
Alignment explanation
Indices: 31677688--31678082 Score: 700
Period size: 218 Copynumber: 1.8 Consensus size: 217
31677678 TCGCATCAGT
* * *
31677688 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCACTATCCTATCTCCCTGAAGTTATAGT
1 TCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGCACTATCCTATCTCCCTGAAGTTACAGT
* *
31677753 GAAGTAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
66 GAAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
31677818 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
131 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
31677883 TGGAGCAGATTGAAGCCAGAGA
196 TGGAGCAGATTGAAGCCAGAGA
31677905 TCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGACACTATCCTATCTCCCTGAAGTTACAG
1 TCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAG-CACTATCCTATCTCCCTGAAGTTACAG
* * * *
31677970 TGGAGCGGATTAAAATAAAAGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTC
65 TGAAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
31678035 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
130 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
31678083 TGAAGTTACA
Statistics
Matches: 168, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
217 35 0.21
218 133 0.79
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (217 bp):
TCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGCACTATCCTATCTCCCTGAAGTTACAGT
GAAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCT
TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGATGTTACAG
TGGAGCAGATTGAAGCCAGAGA
Found at i:31678052 original size:41 final size:41
Alignment explanation
Indices: 31677301--31678143 Score: 313
Period size: 44 Copynumber: 19.8 Consensus size: 41
31677291 AAATAAAGGA
* * *
31677301 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * *
31677342 TCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAAGCACTA--
1 TCTTATCTCCCTGAAG-TTACAGTGGAGTAGA-T--CGCATTAGG
* * * *** *
31677384 TCCTATCTCCTTGAAGTTATAGTGGAGTAGATTAAAATAAAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGA-TCGCAT-TAGG
* * * *
31677427 ATCTTATCTCTCTGAATTTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * * *
31677469 TCTTATCTCCTTGAGGTTACAGTGGATTAGATCGAAGAATTTCAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATC---GCA-TT-AGG
* * * * **
31677515 TCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAGAG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCA-TTAG-G
* * * * * * *
31677558 ATCTTATCTCCTTGAAATTACAGCGGAGTAGATTGAAGCTAGTAA
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCA-TTAG--G
* ** *** *
31677603 TCCTATCTCCCTG-AGATTACAGTGGAGCGGATTAAAATAAAGG
1 TCTTATCTCCCTGAAG-TTACAGTGGAGTAGA-TCGCAT-TAGG
** * * * *
31677646 ATCTTATCTCTTTGAATTTACAGTAGAGTAGATCGCATCAGT
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * *
31677688 TCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAAGCACTA--
1 TCTTATCTCCCTGAAG-TTACAGTGGAGTAGA-T--CGCATTAGG
* * * *** *
31677730 TCCTATCTCCCTGAAGTTATAGTGAAGTAGATTAAAATAAAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGA-TCGCAT-TAGG
* * *
31677773 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * *
31677815 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATC---GCA-TT-AGG
* * * * **
31677861 TCTTATCTCCCTGATGTTACAGTGGAGCAGATTGAAGCCAGAG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCA-TTAG-G
* * * * *
31677904 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTAAAGACACTA--
1 -TCTTATCTCCCTGAAGTTACAGTGGAGTAGA-T--CG-CATTAGG
* ** *** * *
31677948 TCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGA-TCGCAT--TAGG
** *
31677992 TCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATTAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
* * * ** **
31678033 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATT
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
** *
31678074 TCAGATCT--TTGAAGTTACAGTGGAGTAGATCGCATTAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
*
31678113 TCTTATCTCCCTGATGTTACAGTGGAGTAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGTAGA
31678144 CCGAAGAATT
Statistics
Matches: 589, Mismatches: 165, Indels: 96
0.69 0.19 0.11
Matches are distributed among these distances:
39 29 0.05
40 8 0.01
41 164 0.28
42 65 0.11
43 52 0.09
44 196 0.33
45 10 0.02
46 61 0.10
47 3 0.01
48 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (41 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGCATTAGG
Found at i:31678096 original size:39 final size:39
Alignment explanation
Indices: 31678048--31678162 Score: 122
Period size: 41 Copynumber: 2.9 Consensus size: 39
31678038 TCTCCCTGAG
31678048 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTTGAA
1 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTTGAA
* * ** ** ** * *
31678087 GTTACAGTGGAGTAGATCGCATTAGGTCTTATCTCCCTGAT
1 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCT--TTGAA
31678128 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
1 GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
31678163 ATCTCCCTAA
Statistics
Matches: 55, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
39 26 0.47
41 29 0.53
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (39 bp):
GTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTTGAA
Found at i:31678132 original size:80 final size:80
Alignment explanation
Indices: 31677999--31678162 Score: 310
Period size: 80 Copynumber: 2.0 Consensus size: 80
31677989 AGATCTTATC
31677999 TCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGA
1 TCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGA
31678064 CCGAAGAATTTCAGA
66 CCGAAGAATTTCAGA
* *
31678079 TCTTTGAAGTTACAGTGGAGTAGATCGCATTAGGTCTTATCTCCCTGATGTTACAGTGGAGTAGA
1 TCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGA
31678144 CCGAAGAATTTCAGA
66 CCGAAGAATTTCAGA
31678159 TCTT
1 TCTT
31678163 ATCTCCCTAA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (80 bp):
TCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGA
CCGAAGAATTTCAGA
Found at i:31678140 original size:298 final size:298
Alignment explanation
Indices: 31677785--31678322 Score: 751
Period size: 298 Copynumber: 1.8 Consensus size: 298
31677775 CTTATCTCTC
31677785 TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
1 TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
* * * * *
31677850 AGAATTTCAGATCTTATCTCCCTGATGTTA-CAGTGGAGCAGATTGAAGCCA-GAGATCTTATCT
66 AGAATTTCAGATCTTATCTCCCT-AAG-CAGCAGTGGAGCAGATCGAAGACACCA-ATCTTATCT
**
31677913 CCCTGAAATTACAGCGGAGCAGATTA-AAGACA-CTATCCTATCTCCCTGAAGTTACAGTGGAGC
128 CCCTGAAATTACAGCGGAGCAGA-TAGAAGACAGAAATCCTATCTCCCTGAAGTTACAGTGGAGC
* * * * *
31677976 GGATTAAAATAAAAGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCT
192 GGATCAAAATAAAAGATCTCATCCCTCTGAAGTTACAGTAGAGCAGATCGCATTAGGTCTTATCT
31678041 CCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
257 CCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
* * *
31678083 TGAAGTTACAGTGGAGTAGATCGCATTAGGTCTTATCTCCCTGATGTTACAGTGGAGTAGACCGA
1 TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
* * * *
31678148 AGAATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAGGATACCAATCTTATTTCCC
66 AGAATTTCAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACACCAATCTTATCTCCC
* * * * **
31678213 TGAGATTACAGCGGAGCAGATAGAAGCCAGAAATCTTATTTCCCTGAAGTTGTAGTGGAGCGGAT
131 TGAAATTACAGCGGAGCAGATAGAAGACAGAAATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT
* ** *
31678278 CAAAATGATGGATCTCATCCCTCTGAAGTTGCAGTAGAGCAGATC
196 CAAAATAAAAGATCTCATCCCTCTGAAGTTACAGTAGAGCAGATC
31678323 TCATCAGACT
Statistics
Matches: 207, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
296 3 0.01
297 53 0.26
298 151 0.73
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (298 bp):
TGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
AGAATTTCAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACACCAATCTTATCTCCC
TGAAATTACAGCGGAGCAGATAGAAGACAGAAATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT
CAAAATAAAAGATCTCATCCCTCTGAAGTTACAGTAGAGCAGATCGCATTAGGTCTTATCTCCCT
GAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
Found at i:31683830 original size:19 final size:18
Alignment explanation
Indices: 31683785--31683820 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
31683775 CCGTGTGACC
31683785 CTTATTTTCCAAAATTTT
1 CTTATTTTCCAAAATTTT
31683803 CTTATTTTCCAAAATTTT
1 CTTATTTTCCAAAATTTT
31683821 TATACTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.56
Consensus pattern (18 bp):
CTTATTTTCCAAAATTTT
Found at i:31690978 original size:240 final size:240
Alignment explanation
Indices: 31690555--31691028 Score: 923
Period size: 240 Copynumber: 2.0 Consensus size: 240
31690545 GTGCTACTAG
31690555 GCAGACTGTGAAGACAACACTACAAATATATAATTAACTTAAAACATCAATGAAATAAAATTCCT
1 GCAGACTGTGAAGACAACACTACAAATATATAATTAACTTAAAACATCAATGAAATAAAATTCCT
31690620 AAAATCTAACTAAATTAAATTATAAAATAAACTAAAAATCTTACTAAAATAAGCAACAAATAATT
66 AAAATCTAACTAAATTAAATTATAAAATAAACTAAAAATCTTACTAAAATAAGCAACAAATAATT
31690685 CTAAAATATTAGAGCTATTAATATTATATAAAATTATTTTATTAAAAAAATTTATTAAATAAAAA
131 CTAAAATATTAGAGCTATTAATATTATATAAAATTATTTTATTAAAAAAATTTATTAAATAAAAA
*
31690750 TATTTATGTACATCGCAAGAGACAAAAAAAAAAAAAACCATTTTA
196 AATTTATGTACATCGCAAGAGACAAAAAAAAAAAAAACCATTTTA
31690795 GCAGACTGTGAAGACAACACTACAAATATATAATTAACTTAAAACATCAATGAAATAAAATTCCT
1 GCAGACTGTGAAGACAACACTACAAATATATAATTAACTTAAAACATCAATGAAATAAAATTCCT
31690860 AAAATCTAACTAAATTAAATTATAAAATAAACTAAAAATCTTACTAAAATAAGCAACAAATAATT
66 AAAATCTAACTAAATTAAATTATAAAATAAACTAAAAATCTTACTAAAATAAGCAACAAATAATT
31690925 CTAAAATATTAGAGCTATTAATATTTATATAAAA-TATTTTATTAAAAAAATTTATTAAATAAAA
131 CTAAAATATTAGAGCTATTAATA-TTATATAAAATTATTTTATTAAAAAAATTTATTAAATAAAA
31690989 AAATTTATGTACATCGCAAGAGACAAAAAAAAAAAAAACC
195 AAATTTATGTACATCGCAAGAGACAAAAAAAAAAAAAACC
31691029 CTATTAATAA
Statistics
Matches: 232, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
240 222 0.96
241 10 0.04
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (240 bp):
GCAGACTGTGAAGACAACACTACAAATATATAATTAACTTAAAACATCAATGAAATAAAATTCCT
AAAATCTAACTAAATTAAATTATAAAATAAACTAAAAATCTTACTAAAATAAGCAACAAATAATT
CTAAAATATTAGAGCTATTAATATTATATAAAATTATTTTATTAAAAAAATTTATTAAATAAAAA
AATTTATGTACATCGCAAGAGACAAAAAAAAAAAAAACCATTTTA
Found at i:31695982 original size:17 final size:18
Alignment explanation
Indices: 31695960--31695996 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
31695950 TGATGTAATA
*
31695960 AACATT-ATATACACTTT
1 AACATTAATATACAATTT
31695977 AACATTAATATACAATTT
1 AACATTAATATACAATTT
31695995 AA
1 AA
31695997 AAAAGTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (18 bp):
AACATTAATATACAATTT
Found at i:31697751 original size:19 final size:19
Alignment explanation
Indices: 31697724--31697763 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
31697714 CAGTCATAAA
31697724 AATTGATTTAAACTTAT-AT
1 AATTGATTTAAA-TTATGAT
*
31697743 AATTTATTTAAATTATGAT
1 AATTGATTTAAATTATGAT
31697762 AA
1 AA
31697764 GCTACTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (19 bp):
AATTGATTTAAATTATGAT
Found at i:31698370 original size:18 final size:17
Alignment explanation
Indices: 31698347--31698380 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
31698337 CTATATTATT
31698347 AATTTTCAATGAATTTAA
1 AATTTTCAATG-ATTTAA
31698365 AATTTTCAATGATTTA
1 AATTTTCAATGATTTA
31698381 TCAAAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (17 bp):
AATTTTCAATGATTTAA
Found at i:31703888 original size:14 final size:14
Alignment explanation
Indices: 31703871--31703901 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
31703861 CTTCCTTTGG
31703871 GTATGATCCTTGAA
1 GTATGATCCTTGAA
*
31703885 GTATGATCCTTGGA
1 GTATGATCCTTGAA
31703899 GTA
1 GTA
31703902 CTTCCAGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (14 bp):
GTATGATCCTTGAA
Found at i:31706333 original size:51 final size:50
Alignment explanation
Indices: 31706174--31706360 Score: 214
Period size: 51 Copynumber: 3.7 Consensus size: 50
31706164 TATTATCATT
* * * *
31706174 CGATACACGTAGTAGCCTTCAAATAGTACTACACACGTGATCAAACTTTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAACTTTC
* * * * *
31706224 CGGTTCACGTAGTAGCTTCCACATAGTACTACACATGTGACCAAAACCTTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-AAACTTTC
* * * *
31706275 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTA-TTTAT
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCA-AACTTT-C
*
31706326 CGATACACGTAGTAGCCTGCACTTAGTACTACACA
1 CGATACACGTAGTAGCCTGCACATAGTACTACACA
31706361 CGTGTTTATA
Statistics
Matches: 116, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 38 0.33
51 78 0.67
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAACTTTC
Found at i:31713994 original size:51 final size:50
Alignment explanation
Indices: 31713877--31714058 Score: 195
Period size: 51 Copynumber: 3.6 Consensus size: 50
31713867 TCAATACATG
* * * * *
31713877 TAGTAGCCTTCACATAGTACTACACACGTGATCAAACTTTTCGGTTCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGATCAAACCTTCCGGTACACA
* *
31713927 TAGTAGCCTGCACATAGTACTACACACTTGATTAAAGCCTTCCGGTACACA
1 TAGTAGCCTGCACATAGTACTACACACGTGATCAAA-CCTTCCGGTACACA
* * * * * **
31713978 TAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTAT-CGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGATCA-AACCT-TCCGGTACACA
*
31714029 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACATAGTACTACACACGTG
31714059 TTTATAGGCA
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 33 0.30
51 76 0.68
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGATCAAACCTTCCGGTACACA
Found at i:31724660 original size:122 final size:122
Alignment explanation
Indices: 31724423--31724783 Score: 361
Period size: 122 Copynumber: 3.0 Consensus size: 122
31724413 AGAGGTTACA
* * * * ** * *
31724423 ACAAAGGCTTTCTTGTCCT-GATTTTTTCCACAAAGATTGTCCTTTACATTTAGTACTCGCTACA
1 ACAAAGGCTTTCCTGT-CTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTAATACTCGCCACA
* * * * * * *
31724487 AAGGCTTTCATGTCTAGAGTTGTGCCATAAAGACTGTCCTTTACATTCAGTACTCACC
65 AAGGCTTTCTTGTCAAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * *
31724545 ATAAAGTCTTTCTTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTATTACTCGCCACAA
1 ACAAAGGCTTTCCTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTAATACTCGCCACAA
* * * *
31724610 AGGTTTTCTTGTCAAAAGTTGTGCCA-AAAGGGCTATCATTTATATCCAGTACTCGCC
66 AGGCTTTCTTGTCAAGAGTTGTGCCACAAA-GGCTATCCTTTATATCCAGTACTCACC
* * * * ** * *
31724667 ACAAAGGCTTTCCTGTCTAGATTTGTGCCACAAAGGCT-TCATTTATATCCAATACTCACCGCAA
1 ACAAAGGCTTTCCTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTAATACTCGCCACAA
* * *
31724731 AGGCTTTCTTGT-ACAGAGTTGTACCACAAAGGTTATCCTTTATATCTAGTACT
66 AGGCTTTCTTGTCA-AGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACT
31724784 TGTTGGATCA
Statistics
Matches: 198, Mismatches: 37, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
120 1 0.01
121 65 0.33
122 132 0.67
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (122 bp):
ACAAAGGCTTTCCTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTAATACTCGCCACAA
AGGCTTTCTTGTCAAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
Found at i:31724732 original size:60 final size:61
Alignment explanation
Indices: 31724423--31724783 Score: 316
Period size: 61 Copynumber: 5.9 Consensus size: 61
31724413 AGAGGTTACA
* * * ** * * ** * *
31724423 ACAAAGGCTTTCTTGTCCT-GATTTTTTCCACAAAGATTGTCCTTTACATTTAGTACTCGCT
1 ACAAAGGCTTTCTTGT-CTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * * * *
31724484 ACAAAGGCTTTCATGTCTAGAGTTGTGCCATAAAGACTGTCCTTTACATTCAGTACTCACC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * * * ** * *
31724545 ATAAAGTCTTTCTTGTCTAGAGTTGTCCCACAAAGGCTGTCCTTTACATTTATTACTCGCC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * * *
31724606 ACAAAGGTTTTCTTGTCAAAAGTTGTGCCA-AAAGGGCTATCATTTATATCCAGTACTCGCC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAA-GGCTATCCTTTATATCCAGTACTCACC
* * * *
31724667 ACAAAGGCTTTCCTGTCTAGATTTGTGCCACAAAGGCT-TCATTTATATCCAATACTCACC
1 ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
* * * *
31724727 GCAAAGGCTTTCTTGTAC-AGAGTTGTACCACAAAGGTTATCCTTTATATCTAGTACT
1 ACAAAGGCTTTCTTGT-CTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACT
31724784 TGTTGGATCA
Statistics
Matches: 250, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
60 56 0.22
61 191 0.76
62 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (61 bp):
ACAAAGGCTTTCTTGTCTAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTACTCACC
Found at i:31734122 original size:14 final size:14
Alignment explanation
Indices: 31734088--31734116 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
31734078 AAATCTAGTG
31734088 TATGGTTGTAACGT
1 TATGGTTGTAACGT
31734102 TATGGTTGTAACGT
1 TATGGTTGTAACGT
31734116 T
1 T
31734117 TAGGTTTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.28, T:0.45
Consensus pattern (14 bp):
TATGGTTGTAACGT
Found at i:31734687 original size:14 final size:14
Alignment explanation
Indices: 31734653--31734681 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
31734643 AAATCTAGTG
31734653 TATGGTTGTAACGT
1 TATGGTTGTAACGT
31734667 TATGGTTGTAACGT
1 TATGGTTGTAACGT
31734681 T
1 T
31734682 TAGGTTTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.28, T:0.45
Consensus pattern (14 bp):
TATGGTTGTAACGT
Found at i:31734752 original size:565 final size:565
Alignment explanation
Indices: 31733683--31734812 Score: 2260
Period size: 565 Copynumber: 2.0 Consensus size: 565
31733673 GGATAGTTGT
31733683 GTGAAAATTAATCCCTAAAAGTAGAATGACCTAATTATAATTACAAATTTGTCTATAGTAGGTTT
1 GTGAAAATTAATCCCTAAAAGTAGAATGACCTAATTATAATTACAAATTTGTCTATAGTAGGTTT
31733748 CTTTTAATACACTTAGAAGTTCTTGAACCTAAGTTTAGTAAATTGGAAATGAATAATAATAAATA
66 CTTTTAATACACTTAGAAGTTCTTGAACCTAAGTTTAGTAAATTGGAAATGAATAATAATAAATA
31733813 AATAAATAAGGAGAGACTCCATAAAACACTCTAATGTTTGAAAATGTTGACTAGGTAAGTAATAT
131 AATAAATAAGGAGAGACTCCATAAAACACTCTAATGTTTGAAAATGTTGACTAGGTAAGTAATAT
31733878 TCTGTTTTCTCCATTTTATTATTGACCAGAAAAGCAAGTCCAAACAAGAGTGAGTTAAAAAAATT
196 TCTGTTTTCTCCATTTTATTATTGACCAGAAAAGCAAGTCCAAACAAGAGTGAGTTAAAAAAATT
31733943 AGTTTAGGGACACTCCACTGCAATTTTAGGCTGAGTAGCTAATGAGGTAGTTGTTTACTCTATCC
261 AGTTTAGGGACACTCCACTGCAATTTTAGGCTGAGTAGCTAATGAGGTAGTTGTTTACTCTATCC
31734008 ATCTTCTAAGTTAAAAGCCTTAGTTTCATGAGTGAATTACATTCAAATTGTGCCATGATGTAATA
326 ATCTTCTAAGTTAAAAGCCTTAGTTTCATGAGTGAATTACATTCAAATTGTGCCATGATGTAATA
31734073 CCTGAAAATCTAGTGTATGGTTGTAACGTTATGGTTGTAACGTTTAGGTTTGTCCAGGTGTACAC
391 CCTGAAAATCTAGTGTATGGTTGTAACGTTATGGTTGTAACGTTTAGGTTTGTCCAGGTGTACAC
31734138 AGTCGTTATCAAGTAATAAGTAAGTATTGAGTTACTGTCTCCACAGGGATTGTATTTGTGCTAAG
456 AGTCGTTATCAAGTAATAAGTAAGTATTGAGTTACTGTCTCCACAGGGATTGTATTTGTGCTAAG
31734203 TCACTTAATTTGTAAAATTATATTAAGAATTCGGTAAATAAAAAC
521 TCACTTAATTTGTAAAATTATATTAAGAATTCGGTAAATAAAAAC
31734248 GTGAAAATTAATCCCTAAAAGTAGAATGACCTAATTATAATTACAAATTTGTCTATAGTAGGTTT
1 GTGAAAATTAATCCCTAAAAGTAGAATGACCTAATTATAATTACAAATTTGTCTATAGTAGGTTT
31734313 CTTTTAATACACTTAGAAGTTCTTGAACCTAAGTTTAGTAAATTGGAAATGAATAATAATAAATA
66 CTTTTAATACACTTAGAAGTTCTTGAACCTAAGTTTAGTAAATTGGAAATGAATAATAATAAATA
31734378 AATAAATAAGGAGAGACTCCATAAAACACTCTAATGTTTGAAAATGTTGACTAGGTAAGTAATAT
131 AATAAATAAGGAGAGACTCCATAAAACACTCTAATGTTTGAAAATGTTGACTAGGTAAGTAATAT
31734443 TCTGTTTTCTCCATTTTATTATTGACCAGAAAAGCAAGTCCAAACAAGAGTGAGTTAAAAAAATT
196 TCTGTTTTCTCCATTTTATTATTGACCAGAAAAGCAAGTCCAAACAAGAGTGAGTTAAAAAAATT
31734508 AGTTTAGGGACACTCCACTGCAATTTTAGGCTGAGTAGCTAATGAGGTAGTTGTTTACTCTATCC
261 AGTTTAGGGACACTCCACTGCAATTTTAGGCTGAGTAGCTAATGAGGTAGTTGTTTACTCTATCC
31734573 ATCTTCTAAGTTAAAAGCCTTAGTTTCATGAGTGAATTACATTCAAATTGTGCCATGATGTAATA
326 ATCTTCTAAGTTAAAAGCCTTAGTTTCATGAGTGAATTACATTCAAATTGTGCCATGATGTAATA
31734638 CCTGAAAATCTAGTGTATGGTTGTAACGTTATGGTTGTAACGTTTAGGTTTGTCCAGGTGTACAC
391 CCTGAAAATCTAGTGTATGGTTGTAACGTTATGGTTGTAACGTTTAGGTTTGTCCAGGTGTACAC
31734703 AGTCGTTATCAAGTAATAAGTAAGTATTGAGTTACTGTCTCCACAGGGATTGTATTTGTGCTAAG
456 AGTCGTTATCAAGTAATAAGTAAGTATTGAGTTACTGTCTCCACAGGGATTGTATTTGTGCTAAG
31734768 TCACTTAATTTGTAAAATTATATTAAGAATTCGGTAAATAAAAAC
521 TCACTTAATTTGTAAAATTATATTAAGAATTCGGTAAATAAAAAC
31734813 ACAATATAGT
Statistics
Matches: 565, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
565 565 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (565 bp):
GTGAAAATTAATCCCTAAAAGTAGAATGACCTAATTATAATTACAAATTTGTCTATAGTAGGTTT
CTTTTAATACACTTAGAAGTTCTTGAACCTAAGTTTAGTAAATTGGAAATGAATAATAATAAATA
AATAAATAAGGAGAGACTCCATAAAACACTCTAATGTTTGAAAATGTTGACTAGGTAAGTAATAT
TCTGTTTTCTCCATTTTATTATTGACCAGAAAAGCAAGTCCAAACAAGAGTGAGTTAAAAAAATT
AGTTTAGGGACACTCCACTGCAATTTTAGGCTGAGTAGCTAATGAGGTAGTTGTTTACTCTATCC
ATCTTCTAAGTTAAAAGCCTTAGTTTCATGAGTGAATTACATTCAAATTGTGCCATGATGTAATA
CCTGAAAATCTAGTGTATGGTTGTAACGTTATGGTTGTAACGTTTAGGTTTGTCCAGGTGTACAC
AGTCGTTATCAAGTAATAAGTAAGTATTGAGTTACTGTCTCCACAGGGATTGTATTTGTGCTAAG
TCACTTAATTTGTAAAATTATATTAAGAATTCGGTAAATAAAAAC
Found at i:31749225 original size:196 final size:195
Alignment explanation
Indices: 31748879--31749269 Score: 613
Period size: 196 Copynumber: 2.0 Consensus size: 195
31748869 AAACTTCCTT
* * * *
31748879 TTCATAAATTCACAACATATGTTATTTGAACACTTATCGTTCATTTCCTTTTCATGCCAGTTGAA
1 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATACCAGTTGAA
* * *
31748944 CCATTTAGAATAACATCGGATACGCGAGAAAGCTCACACGAAGTGTGCTAAACATATGGTCCTAA
66 CCATTTAGAATAACATCGGATACGCGAGAAAGATCACACGAAGTGTGCTAAAAATATAGTCCTAA
31749009 CATTTCCTTTTCCCTTACATCGTCGCTCACTCGAGC-TGCAAAATGAGTCTGCTCACACAAGCTA
131 CATTTCCTTTTCCCTTACATCGTCGCTCACTCGAGCATG--AAATGAGTCTGCTCACACAAGCTA
31749073 AA
194 AA
* *
31749075 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCTTTTTCATACCCGTTGAA
1 TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATACCAGTTGAA
* **
31749140 CCATTTAGAATAACATCGGATACGCGGGAAAGATCACACGAAGTGTGCTAAAAATATAGTTGTAA
66 CCATTTAGAATAACATCGGATACGCGAGAAAGATCACACGAAGTGTGCTAAAAATATAGTCCTAA
* * *
31749205 CATTTCCTTTTCCTTTACATCGTGGCTCACTTGAGCAATGAAATGAGTCTGCTCACACAAGCTAA
131 CATTTCCTTTTCCCTTACATCGTCGCTCACTCGAGC-ATGAAATGAGTCTGCTCACACAAGCTAA
31749270 CTGTAACACC
Statistics
Matches: 178, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
196 176 0.99
198 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (195 bp):
TTCACAAATTCACAACATAAGTTATTTGAACACTTACCGTTCATTTCCTTTTCATACCAGTTGAA
CCATTTAGAATAACATCGGATACGCGAGAAAGATCACACGAAGTGTGCTAAAAATATAGTCCTAA
CATTTCCTTTTCCCTTACATCGTCGCTCACTCGAGCATGAAATGAGTCTGCTCACACAAGCTAAA
Found at i:31750630 original size:15 final size:15
Alignment explanation
Indices: 31750610--31750639 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
31750600 CATCCCATGA
31750610 TAAGATAAGTTTCAT
1 TAAGATAAGTTTCAT
31750625 TAAGATAAGTTTCAT
1 TAAGATAAGTTTCAT
31750640 GAACATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
TAAGATAAGTTTCAT
Found at i:31750647 original size:15 final size:15
Alignment explanation
Indices: 31750614--31750647 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
31750604 CCATGATAAG
* *
31750614 ATAAGTTTCATTAAG
1 ATAAGTTTCATGAAC
31750629 ATAAGTTTCATGAAC
1 ATAAGTTTCATGAAC
31750644 ATAA
1 ATAA
31750648 CATACTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (15 bp):
ATAAGTTTCATGAAC
Found at i:31753946 original size:19 final size:19
Alignment explanation
Indices: 31753934--31753974 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
31753924 TAAATAAAAT
31753934 AAAATGAAATAAAAGAAAG
1 AAAATGAAATAAAAGAAAG
* *
31753953 CAAATGAAATAAACGAAAG
1 AAAATGAAATAAAAGAAAG
31753972 AAA
1 AAA
31753975 GAAACAGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.71, C:0.05, G:0.15, T:0.10
Consensus pattern (19 bp):
AAAATGAAATAAAAGAAAG
Found at i:31754038 original size:18 final size:18
Alignment explanation
Indices: 31754017--31754051 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31754007 GAAACAGGGG
*
31754017 AGAAAGAAAGAAAGAAAA
1 AGAAAAAAAGAAAGAAAA
*
31754035 AGAAAAAAAGAGAGAAA
1 AGAAAAAAAGAAAGAAA
31754052 GAAAAAACTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAGAAAGAAAA
Found at i:31754687 original size:16 final size:16
Alignment explanation
Indices: 31754666--31754704 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
31754656 TTATGCGTAT
31754666 GGTAAG-CAAATAATAA
1 GGTAAGTCAAAT-ATAA
*
31754682 GGTAAGTGAAATATAA
1 GGTAAGTCAAATATAA
31754698 GGTAAGT
1 GGTAAGT
31754705 ATTATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.49, C:0.03, G:0.26, T:0.23
Consensus pattern (16 bp):
GGTAAGTCAAATATAA
Found at i:31767417 original size:37 final size:37
Alignment explanation
Indices: 31767367--31767442 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
31767357 TCGGGTCTCC
*
31767367 TGTCTGATAATAACATGCCAAAGCCATGTCCTAGACA
1 TGTCTGATAATAACATGCCAAAGCCATGTCCCAGACA
31767404 TGTCTGATAATAACATGCCAAAGCCATGTCCCAGACA
1 TGTCTGATAATAACATGCCAAAGCCATGTCCCAGACA
31767441 TG
1 TG
31767443 GTCTTACATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (37 bp):
TGTCTGATAATAACATGCCAAAGCCATGTCCCAGACA
Found at i:31767568 original size:50 final size:50
Alignment explanation
Indices: 31767507--31767613 Score: 160
Period size: 50 Copynumber: 2.1 Consensus size: 50
31767497 ACATGAAAGT
* * *
31767507 TCTCATATCGGTGCCCATGCCATGTCCCAGACATAGTCTTACGGGGGACC
1 TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
* * *
31767557 TCTCATCTCGGTACCAACGCCATGTCCCAGACATGGTCTTACGTGGGACC
1 TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
31767607 TCTCATA
1 TCTCATA
31767614 ACCTCAATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (50 bp):
TCTCATATCGGTACCAACGCCATGTCCCAGACATAGTCTTACGGGGGACC
Found at i:31767644 original size:56 final size:50
Alignment explanation
Indices: 31767523--31767660 Score: 159
Period size: 50 Copynumber: 2.6 Consensus size: 50
31767513 ATCGGTGCCC
* * **
31767523 ATGCCATGTCCCAGACATAGTCTTACGGGGGACCTCTCATCTCGGTACCA
1 ATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCAATACCA
* *
31767573 ACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAATTCTA
1 ATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCAT---CTCAAT-A--CCA
*
31767629 ATGCCATGTCCCAGACATGGTCTTACATGGGA
1 ATGCCATGTCCCAGACATGGTCTTACGTGGGA
31767661 TCTCATTCCC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
50 37 0.50
53 4 0.05
54 1 0.01
56 32 0.43
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCAATACCA
Found at i:31770036 original size:109 final size:107
Alignment explanation
Indices: 31769815--31770142 Score: 392
Period size: 109 Copynumber: 3.0 Consensus size: 107
31769805 ATGACAATGA
* * * * * *
31769815 TATATGGTGTAAGACCATAGATAAAAGATGCTATAGTAGTATGGTATGAAGTACATAGCTAAGAC
1 TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGTAGTCTGGTATGAAGTACGTAGCTAAGAC
*
31769880 CATGGATGAAAGATGTCATG-GCGTTATGGTA-AATGGTATAAGG
66 CATGGATGAAAGATGTCATGAG-G-AATGGTACAA-GGTATAAGG
* *
31769923 TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGCAGTCTGCTATGAAGTACGTAGCATAAGA
1 TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGTAGTCTGGTATGAAGTACGTAGC-TAAGA
* *
31769988 CTATAGATGAAAGATGTCATAGAGGAATGGTACAAGGTATAAGG
65 CCATGGATGAAAGATGTCAT-GAGGAATGGTACAAGGTATAAGG
* ** * * *
31770032 TATATGGCATAAGGTCATAGATGAAAGAGACTATGGTAGTCTGGT-TAAAGGTACGTAGTGTAAG
1 TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGTAGTCTGGTATGAA-GTACGTAG-CTAAG
* *
31770096 ACCATGGATGAAAGATGTCATGATGGCATGGTACAAGGTATATGG
64 ACCATGGATGAAAGATGTCATGA-GGAATGGTACAAGGTATAAGG
31770141 TA
1 TA
31770143 ATAACTCTTG
Statistics
Matches: 190, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
108 56 0.29
109 129 0.68
110 4 0.02
111 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.26
Consensus pattern (107 bp):
TATATGGCGTAAGACCATAGATGAAAGAGGCTATGGTAGTCTGGTATGAAGTACGTAGCTAAGAC
CATGGATGAAAGATGTCATGAGGAATGGTACAAGGTATAAGG
Found at i:31773551 original size:17 final size:18
Alignment explanation
Indices: 31773526--31773559 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
31773516 GGTGAACTCC
*
31773526 AGGATTTGGCGGACTCTA
1 AGGATTTGGCAGACTCTA
31773544 AGGA-TTGGCAGACTCT
1 AGGATTTGGCAGACTCT
31773560 TCTGTTAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (18 bp):
AGGATTTGGCAGACTCTA
Found at i:31775902 original size:15 final size:16
Alignment explanation
Indices: 31775884--31775939 Score: 98
Period size: 15 Copynumber: 3.6 Consensus size: 16
31775874 GATGCATAAA
31775884 TAAAACCCT-AAACCC
1 TAAAACCCTAAAACCC
31775899 TAAAACCCTAAAACCC
1 TAAAACCCTAAAACCC
31775915 T-AAACCCTAAAACCC
1 TAAAACCCTAAAACCC
31775930 TAAAACCCTA
1 TAAAACCCTA
31775940 TAAGAATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
15 24 0.62
16 15 0.38
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (16 bp):
TAAAACCCTAAAACCC
Found at i:31775904 original size:8 final size:8
Alignment explanation
Indices: 31775884--31775939 Score: 98
Period size: 8 Copynumber: 7.2 Consensus size: 8
31775874 GATGCATAAA
31775884 TAAAACCC
1 TAAAACCC
31775892 T-AAACCC
1 TAAAACCC
31775899 TAAAACCC
1 TAAAACCC
31775907 TAAAACCC
1 TAAAACCC
31775915 T-AAACCC
1 TAAAACCC
31775922 TAAAACCC
1 TAAAACCC
31775930 TAAAACCC
1 TAAAACCC
31775938 TA
1 TA
31775940 TAAGAATTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
7 14 0.30
8 32 0.70
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (8 bp):
TAAAACCC
Found at i:31775914 original size:23 final size:23
Alignment explanation
Indices: 31775884--31775939 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
31775874 GATGCATAAA
31775884 TAAAACCCTAAACCCTAAAACCC
1 TAAAACCCTAAACCCTAAAACCC
31775907 TAAAACCCTAAACCCTAAAACCC
1 TAAAACCCTAAACCCTAAAACCC
31775930 TAAAACCCTA
1 TAAAACCCTA
31775940 TAAGAATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (23 bp):
TAAAACCCTAAACCCTAAAACCC
Found at i:31781279 original size:22 final size:22
Alignment explanation
Indices: 31781253--31781300 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
31781243 ATAAAAGGGC
31781253 AAATAA-AACTAATAATAATAAT
1 AAATAATAA-TAATAATAATAAT
* *
31781275 AAATAATAATAATGATGATAAT
1 AAATAATAATAATAATAATAAT
31781297 AAAT
1 AAAT
31781301 GCTAATACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (22 bp):
AAATAATAATAATAATAATAAT
Found at i:31781281 original size:13 final size:13
Alignment explanation
Indices: 31781263--31781287 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31781253 AAATAAAACT
31781263 AATAATAATAATA
1 AATAATAATAATA
31781276 AATAATAATAAT
1 AATAATAATAAT
31781288 GATGATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:31785129 original size:22 final size:22
Alignment explanation
Indices: 31785103--31785147 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
31785093 AGATCAACAC
31785103 AAATAT-AATCACATACATATCA
1 AAATATCAATCACAT-CATATCA
*
31785125 AAATATCAATCTCATCATATCA
1 AAATATCAATCACATCATATCA
31785147 A
1 A
31785148 TCATCACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (22 bp):
AAATATCAATCACATCATATCA
Found at i:31788901 original size:23 final size:23
Alignment explanation
Indices: 31788826--31788910 Score: 81
Period size: 23 Copynumber: 3.8 Consensus size: 23
31788816 TACATCTTTT
31788826 AACTCATCATTCCCTTTTATTTC
1 AACTCATCATTCCCTTTTATTTC
* * *
31788849 -A-TCAT-ATTTCATTTT-TTTGGT
1 AACTCATCATTCCCTTTTATTT--C
31788870 AAC-CAATCATTCCCTTTTATTTC
1 AACTC-ATCATTCCCTTTTATTTC
31788893 AACTCATCATTCCCTTTT
1 AACTCATCATTCCCTTTT
31788911 CTTTGGCAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 16
0.69 0.09 0.23
Matches are distributed among these distances:
19 3 0.06
20 8 0.17
21 4 0.08
22 3 0.06
23 18 0.38
24 9 0.19
25 3 0.06
ACGTcount: A:0.22, C:0.26, G:0.02, T:0.49
Consensus pattern (23 bp):
AACTCATCATTCCCTTTTATTTC
Found at i:31798217 original size:24 final size:25
Alignment explanation
Indices: 31798151--31798222 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 25
31798141 GAGCGTCTCA
*
31798151 TTAT-TAGCTCTTAT-GAGCTTCTCG
1 TTATATAGCTCTT-TGGAGCTTCCCG
* *
31798175 TTATATGGTTC-TTGCGAGCTTCCCG
1 TTATATAGCTCTTTG-GAGCTTCCCG
*
31798200 TTA-ATAGCTCTTTGGAGCATCCC
1 TTATATAGCTCTTTGGAGCTTCCC
31798223 AATTGGTTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
23 1 0.03
24 18 0.47
25 19 0.50
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.40
Consensus pattern (25 bp):
TTATATAGCTCTTTGGAGCTTCCCG
Found at i:31798329 original size:27 final size:25
Alignment explanation
Indices: 31798286--31798356 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 25
31798276 CCTAATATAT
*
31798286 GGCTCTTTAGAGCTTCCCGATTAAA
1 GGCTCTTTAGAGCTTCCCAATTAAA
*
31798311 GGCTCTTTCATGAGCTTCCCAATTAATT
1 GGCTCTTT-A-GAGCTTCCCAATTAA-A
* *
31798339 GGCTCTCTAGGGCTTCCC
1 GGCTCTTTAGAGCTTCCC
31798357 TATATTGGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
25 8 0.21
26 9 0.23
27 15 0.38
28 7 0.18
ACGTcount: A:0.18, C:0.28, G:0.20, T:0.34
Consensus pattern (25 bp):
GGCTCTTTAGAGCTTCCCAATTAAA
Found at i:31807878 original size:30 final size:30
Alignment explanation
Indices: 31807844--31808012 Score: 132
Period size: 30 Copynumber: 5.7 Consensus size: 30
31807834 AACCTCAGTT
31807844 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
* * *
31807874 ATC-AATGAGGAAAAGGGATGGTGACGAGC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
* * * ** * *
31807903 ATCAGA-CAGTGAAAAGGGATAGCT-TTGGCT
1 ATCAAATTA-TGAAAAGGGAT-GGTGACGACC
* * * *
31807933 GTCAAATTATGAAAAGGGATAGCT-TC-AGCT
1 ATCAAATTATGAAAAGGGAT-GGTGACGA-CC
31807963 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
*
31807993 ATCAAATAATGAAAAGGGAT
1 ATCAAATTATGAAAAGGGAT
31808013 AGTTTTGGCT
Statistics
Matches: 110, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
29 29 0.26
30 77 0.70
31 4 0.04
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.21
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATGGTGACGACC
Found at i:31808012 original size:90 final size:91
Alignment explanation
Indices: 31807803--31808047 Score: 264
Period size: 90 Copynumber: 2.7 Consensus size: 91
31807793 ACGGTGTACG
* * * ** * *
31807803 TGGTGACGACCATCAACTAATGAAAAGGGATAACCTCAGTTATCAAATTATGAAAAGGGAT-G-G
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATAGCT
*
31807866 TGACGACCATCAATGAGGAAAAGGGA
66 TCACGACCATCAATGAGGAAAAGGGA
* * * * *
31807892 TGGTGACGAGCATCAGACAGTGAAAAGGGATAGCTTTGGCTGTCAAATTATGAAAAGGGATAGCT
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATAGCT
* * *
31807957 TCA-G-CTATCAAATTATGAAAAGGGA
66 TCACGACCATC-AATGAGGAAAAGGGA
* *** *
31807982 TGGTGACGACCATCAAATAATGAAAAGGGATAGTTTTGGCTATCGGGTAATGAAAAGGGATAGCT
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATAGCT
31808047 T
66 T
31808048 TGGCTATCGA
Statistics
Matches: 127, Mismatches: 26, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
89 54 0.43
90 71 0.56
91 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (91 bp):
TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATAGCT
TCACGACCATCAATGAGGAAAAGGGA
Found at i:31808025 original size:60 final size:60
Alignment explanation
Indices: 31807803--31808014 Score: 200
Period size: 60 Copynumber: 3.5 Consensus size: 60
31807793 ACGGTGTACG
* * * *
31807803 TGGTGACGACCATCAACTAATGAAAAGGGATAACCTCAGTTATCAAATTATGAAAAGGGA
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGA
* * * * * *
31807863 TGGTGACGACCATC-AATGAGGAAAAGGGAT-GGTGACGAGC-ATCAGA-CAGTGAAAAGGGA
1 TGGTGACGACCATCAAATAATGAAAAGGGATAGCT-TC-AGCTATCAAATTA-TGAAAAGGGA
* ** * ** *
31807922 TAGCT-TTGGCTGTCAAATTATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGA
1 T-GGTGACGACCATCAAATAATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGA
31807982 TGGTGACGACCATCAAATAATGAAAAGGGATAG
1 TGGTGACGACCATCAAATAATGAAAAGGGATAG
31808015 TTTTGGCTAT
Statistics
Matches: 114, Mismatches: 29, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
58 1 0.01
59 39 0.34
60 71 0.62
61 3 0.03
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (60 bp):
TGGTGACGACCATCAAATAATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGA
Found at i:31808033 original size:30 final size:30
Alignment explanation
Indices: 31807999--31808056 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
31807989 GACCATCAAA
*
31807999 TAATGAAAAGGGATAGTTTTGGCTATCGGG
1 TAATGAAAAGGGATAGCTTTGGCTATCGGG
31808029 TAATGAAAAGGGATAGCTTTGGCTATCG
1 TAATGAAAAGGGATAGCTTTGGCTATCG
31808057 AGCTATAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (30 bp):
TAATGAAAAGGGATAGCTTTGGCTATCGGG
Found at i:31808084 original size:90 final size:90
Alignment explanation
Indices: 31807884--31808085 Score: 217
Period size: 90 Copynumber: 2.2 Consensus size: 90
31807874 ATCAATGAGG
* * * * * * *
31807884 AAAAGGGATGGTGACGAGCATCAGACAGTGAAAAGGGATAGCTTTGGCTGTCAAATTATGAAAAG
1 AAAAGGGATGGTGACAACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATAATGAAAAG
* *
31807949 GGATAGCTTCAGCTATCAAATTATG
66 GGATAGCTTCAGCTATCAAACTATA
* * ***
31807974 AAAAGGGATGGTGACGACCATCAAATAATGAAAAGGGATAGTTTTGGCTATCGGGTAATGAAAAG
1 AAAAGGGATGGTGACAACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATAATGAAAAG
** * *
31808039 GGATAGCTTTGGCTATCGAGCTATAA
66 GGATAGCTTCAGCTATCAAACTAT-A
*
31808065 AAAAGGGTTGG-GACAACCATC
1 AAAAGGGATGGTGACAACCATC
31808086 GTGATTTTAC
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 83 0.89
91 10 0.11
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (90 bp):
AAAAGGGATGGTGACAACCATCAAATAATGAAAAGGGATAGCTTTGGCTATCAAATAATGAAAAG
GGATAGCTTCAGCTATCAAACTATA
Found at i:31808273 original size:21 final size:22
Alignment explanation
Indices: 31808230--31808273 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
31808220 TCTCATGTTG
*
31808230 GATTGATGCATATGTATTCTAA
1 GATTGATGCATATGTATTATAA
31808252 GATT-ATGCA-ATGTATTGATAA
1 GATTGATGCATATGTATT-ATAA
31808273 G
1 G
31808274 CATAGTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (22 bp):
GATTGATGCATATGTATTATAA
Found at i:31809805 original size:22 final size:22
Alignment explanation
Indices: 31809780--31809823 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
31809770 AATTATTAAC
* *
31809780 ATATTGAATTTTAATTACTTTT
1 ATATTAAATTTTAATTAATTTT
*
31809802 ATATTAAATTTTGATTAATTTT
1 ATATTAAATTTTAATTAATTTT
31809824 GATTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (22 bp):
ATATTAAATTTTAATTAATTTT
Done.