Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46006518
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2011935 characters in sequence are not A, C, G, or T
File 98 of 141
Found at i:31819691 original size:25 final size:25
Alignment explanation
Indices: 31819663--31819713 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
31819653 GATGCTTATC
*
31819663 GATATTCAGCTCACATGAGCTTACT
1 GATATTCAGATCACATGAGCTTACT
**
31819688 GATATTCAGATCGTATGAGCTTACT
1 GATATTCAGATCACATGAGCTTACT
31819713 G
1 G
31819714 TTTACAGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (25 bp):
GATATTCAGATCACATGAGCTTACT
Found at i:31819756 original size:25 final size:25
Alignment explanation
Indices: 31819677--31819760 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
31819667 TTCAGCTCAC
*
31819677 ATGAGCTTACTGATATTCAGA--TCGT
1 ATGAGCATACTG--ATTCAGAGCTCGT
* * * *
31819702 ATGAGCTTACTG-TTTACAGCTTGT
1 ATGAGCATACTGATTCAGAGCTCGT
*
31819726 AAGAGCATACTGATTCAGAGCTCGT
1 ATGAGCATACTGATTCAGAGCTCGT
31819751 ATGAGCATAC
1 ATGAGCATAC
31819761 ATGTAGAAGA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
22 4 0.09
24 13 0.28
25 30 0.64
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (25 bp):
ATGAGCATACTGATTCAGAGCTCGT
Found at i:31823139 original size:24 final size:24
Alignment explanation
Indices: 31823107--31823167 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
31823097 ATCCCTAAAA
*
31823107 CAATGAAAAGGTTC-AAAAGGATAT
1 CAATGAAAAGG-TCGAAAAGGATAG
*
31823131 CAATGAAAAGGTCGAAAATGATAG
1 CAATGAAAAGGTCGAAAAGGATAG
31823155 CAATG-AAAGGTCG
1 CAATGAAAAGGTCG
31823168 CTATCTCATC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 10 0.29
24 24 0.71
ACGTcount: A:0.48, C:0.10, G:0.25, T:0.18
Consensus pattern (24 bp):
CAATGAAAAGGTCGAAAAGGATAG
Found at i:31829185 original size:51 final size:49
Alignment explanation
Indices: 31829108--31829210 Score: 143
Period size: 51 Copynumber: 2.1 Consensus size: 49
31829098 AAACATGGTA
* *
31829108 GTTATAATTTTTTTTGGAAAGAATATAACATGTTTTTAATACTTTCCATAT
1 GTTATAATTCTTTTTGGAAAGAATATAAC--GTGTTTAATACTTTCCATAT
* * *
31829159 GTTATAATTCTTTTTGGAAAGGATATAACGTGTTTAATTCTTTCCTTAT
1 GTTATAATTCTTTTTGGAAAGAATATAACGTGTTTAATACTTTCCATAT
31829208 GTT
1 GTT
31829211 CTCTATAAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 20 0.43
51 27 0.57
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.50
Consensus pattern (49 bp):
GTTATAATTCTTTTTGGAAAGAATATAACGTGTTTAATACTTTCCATAT
Found at i:31836080 original size:50 final size:49
Alignment explanation
Indices: 31836004--31836105 Score: 141
Period size: 50 Copynumber: 2.1 Consensus size: 49
31835994 AAAAATGGTA
* ** *
31836004 GTTATAATTCTTTTTGGAAAGAATATAACGTTTTTTAATACTTTCCATAT
1 GTTATAATTCTTTTTGAAAAGAATATAA-AATGTTTAATACTTTCCATAT
* *
31836054 GTTATAATTCTTTTTGAAAAGTATATAAAATGTTTAATTCTTTCCATAT
1 GTTATAATTCTTTTTGAAAAGAATATAAAATGTTTAATACTTTCCATAT
31836103 GTT
1 GTT
31836106 GTCTATAAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
49 20 0.43
50 26 0.57
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (49 bp):
GTTATAATTCTTTTTGAAAAGAATATAAAATGTTTAATACTTTCCATAT
Found at i:31838183 original size:28 final size:28
Alignment explanation
Indices: 31838131--31838199 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
31838121 GTGTTCAAAC
* *
31838131 CCCTATAGGCAATCCCCTTACATGTGAAA
1 CCCTATAGGCGA-GCCCTTACATGTGAAA
* * **
31838160 CCTTATAGGCGAGCCCTTATATGTGACC
1 CCCTATAGGCGAGCCCTTACATGTGAAA
31838188 CCCTATAGGCGA
1 CCCTATAGGCGA
31838200 ACACCTAGTT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
28 23 0.70
29 10 0.30
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (28 bp):
CCCTATAGGCGAGCCCTTACATGTGAAA
Found at i:31838342 original size:17 final size:17
Alignment explanation
Indices: 31838320--31838367 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
31838310 TTTAACATGT
31838320 GAACCCTTTATGTATGC
1 GAACCCTTTATGTATGC
** *
31838337 GAACCCAATATTGCATGC
1 GAACCCTTTA-TGTATGC
*
31838355 GAACCCTTCATGT
1 GAACCCTTTATGT
31838368 TTGTTACATG
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (17 bp):
GAACCCTTTATGTATGC
Found at i:31840978 original size:12 final size:12
Alignment explanation
Indices: 31840961--31840990 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
31840951 AGCCACATGC
31840961 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
31840973 CCGTGTGCTAGG
1 CCGTGTGCCAGG
31840985 CCGTGT
1 CCGTGT
31840991 AACAGCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:31859136 original size:48 final size:48
Alignment explanation
Indices: 31859065--31859268 Score: 246
Period size: 48 Copynumber: 4.2 Consensus size: 48
31859055 TATGCACACT
* * * *
31859065 GATATTCTGTTATGACACAAGGGTGGCACGGACTGTGTGTAGGCCATC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * *
31859113 GATATTCTGTTATGATACAAGGGTGGCACAGACTATGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * * *
31859161 AATAACCTGTTAAGATACAAGGGTGGCACGGACTATGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
* * * * *
31859209 GAGAATCTGTTATTACACAAAGGTGGTACGGACTGTGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
*
31859257 GAGAAATCTGTT
1 GA-TAATCTGTT
31859269 TTTATTCTGA
Statistics
Matches: 135, Mismatches: 20, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
48 127 0.94
49 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GATAATCTGTTATGACACAAGGGTGGCACGGACTATGTGCAGGCCACC
Found at i:31863658 original size:36 final size:36
Alignment explanation
Indices: 31863562--31863660 Score: 153
Period size: 37 Copynumber: 2.7 Consensus size: 36
31863552 TGAGAACCAT
*
31863562 CAAAGGGAATTATCTGCAAGCCAATAGATGAATTTA
1 CAAAGGGAATTATCTGCAAGCCAATGGATGAATTTA
* * *
31863598 CAAATTGTAATTATCTGCAGGCCAATGGATGAATTTA
1 CAAA-GGGAATTATCTGCAAGCCAATGGATGAATTTA
31863635 CAAAGGGAATTATCTGCAAGCCAATG
1 CAAAGGGAATTATCTGCAAGCCAATG
31863661 CGAAAAACCA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
36 23 0.42
37 32 0.58
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (36 bp):
CAAAGGGAATTATCTGCAAGCCAATGGATGAATTTA
Found at i:31868668 original size:45 final size:45
Alignment explanation
Indices: 31868601--31868688 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
31868591 ACAGATACTC
* *
31868601 GGTGGATTCAGCACATAACAACCACCTTATTAATCAATGATGTCT
1 GGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTCT
*
31868646 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 GGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGT
31868689 TCGGTTCACA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (45 bp):
GGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTCT
Found at i:31868757 original size:51 final size:49
Alignment explanation
Indices: 31868699--31868885 Score: 218
Period size: 51 Copynumber: 3.7 Consensus size: 49
31868689 TCGGTTCACA
*
31868699 TAGTAGCCTGCACATAGTACTACACATGTGACCATTATCATCCGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCG-TACATG
* * *
31868750 TAGTAGCCTGCACATAGTACTACACACGTGATCGA-AACTATCCTGTACGA-A
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCC-GTAC-ATG
* * *
31868801 TAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCC-GTACATG
31868851 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
31868886 CACTTTCACT
Statistics
Matches: 114, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
49 2 0.02
50 42 0.37
51 66 0.58
52 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCCGTACATG
Found at i:31868874 original size:101 final size:101
Alignment explanation
Indices: 31868698--31868881 Score: 316
Period size: 101 Copynumber: 1.8 Consensus size: 101
31868688 TTCGGTTCAC
* *
31868698 ATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCATCCGATACATGTAGTAGCCTGCAC
1 ATAGTAGCCTACACATAGTACTACACATGCGACCA-TATCATCCGATACATGTAGTAGCCTGCAC
31868763 ATAGTACTACACACGTGATCGAAACTATCCTGTACGA
65 ATAGTACTACACACGTGATCGAAACTATCCTGTACGA
*
31868800 ATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACATGTAGTAGCCTGCAC
1 ATAGTAGCCTACACATAGTACTACACATGCGACCATATCA-TCCGATACATGTAGTAGCCTGCAC
31868864 ATAGTACTACACACGTGA
65 ATAGTACTACACACGTGA
31868882 CCATCACTTT
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
100 5 0.06
101 41 0.53
102 32 0.41
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
ATAGTAGCCTACACATAGTACTACACATGCGACCATATCATCCGATACATGTAGTAGCCTGCACA
TAGTACTACACACGTGATCGAAACTATCCTGTACGA
Found at i:31878748 original size:17 final size:17
Alignment explanation
Indices: 31878726--31878760 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
31878716 AAATTATTTC
31878726 TAAAAAATAAATTAAAT
1 TAAAAAATAAATTAAAT
*
31878743 TAAAAAATTAATTAAAT
1 TAAAAAATAAATTAAAT
31878760 T
1 T
31878761 TTCTATTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAAAAATAAATTAAAT
Found at i:31893003 original size:50 final size:50
Alignment explanation
Indices: 31892887--31893073 Score: 167
Period size: 50 Copynumber: 3.6 Consensus size: 50
31892877 GAGATACAAT
* * * ** *
31892887 GTAAGACCATATCTGGGATATGGCATTGGCATCATTGTGATTACGAGAGGTCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCA-C--CGAGA-TA--AGAACTCCCAC
* * *
31892943 GTAAGACCATGTCTGGGATATGGCGTTGGCACCGAGATAAGAAGTCCCCC
1 GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAACTCCCAC
* * * * * * *
31892993 GTAAGGCCATGTCTGGGACATGACATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAACTCCCAC
*
31893043 GTAAGACCATATCTGGGATATGGCATTGGCA
1 GTAAGACCATGTCTGGGATATGGCATTGGCA
31893074 GTACAGGAAA
Statistics
Matches: 109, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
50 74 0.68
52 2 0.02
53 3 0.03
55 1 0.01
56 29 0.27
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATAAGAACTCCCAC
Found at i:31893341 original size:12 final size:12
Alignment explanation
Indices: 31893324--31893362 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
31893314 ATGAGTTATT
31893324 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
31893336 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
31893348 TAAGAAAGTAAG
1 TAAGTAAGCAAG
31893360 TAA
1 TAA
31893363 AGAAGAAGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:31899846 original size:33 final size:33
Alignment explanation
Indices: 31899800--31899866 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
31899790 TGTTTTATGG
31899800 TAGAATATAAAGCTTGGAACTATGTCAAACAAC
1 TAGAATATAAAGCTTGGAACTATGTCAAACAAC
*
31899833 TAGAATATGAAGCTTGGAACTATGTCAAACAAC
1 TAGAATATAAAGCTTGGAACTATGTCAAACAAC
31899866 T
1 T
31899867 TTTGGTAGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.25
Consensus pattern (33 bp):
TAGAATATAAAGCTTGGAACTATGTCAAACAAC
Found at i:31900905 original size:20 final size:20
Alignment explanation
Indices: 31900880--31900918 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
31900870 TGAGTTATTT
*
31900880 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGAAAGTAAGTAAAC
*
31900900 AAGTAATAAAGTAAGTAAA
1 AAGTAAGAAAGTAAGTAAA
31900919 GAAGAAGCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.05, G:0.18, T:0.18
Consensus pattern (20 bp):
AAGTAAGAAAGTAAGTAAAC
Found at i:31902248 original size:28 final size:29
Alignment explanation
Indices: 31902196--31902295 Score: 96
Period size: 29 Copynumber: 3.5 Consensus size: 29
31902186 ATTTAAGGTC
** * *
31902196 GCCTTTGTGGCAAAACTTTGGAAAGGTAA
1 GCCTTTGTGGTGAAACTCTAGAAAGGTAA
* * *
31902225 GCCTTTGTGGTGTACCTGTA-AAAGGTCAA
1 GCCTTTGTGGTGAAACTCTAGAAAGGT-AA
**
31902254 -CCTTTGTGGCAAAACTCTAGAAAGGTAA
1 GCCTTTGTGGTGAAACTCTAGAAAGGTAA
31902282 GCCTTTGTGGTGAA
1 GCCTTTGTGGTGAA
31902296 CTTCTTAAGG
Statistics
Matches: 55, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
28 22 0.40
29 33 0.60
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (29 bp):
GCCTTTGTGGTGAAACTCTAGAAAGGTAA
Found at i:31902413 original size:29 final size:30
Alignment explanation
Indices: 31902329--31902413 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 30
31902319 AAAATCTCTA
** *
31902329 AAAGGAAAAGCCTTTGTGGCGATCTCTGTC
1 AAAGGAAAAGCCTTTGTGGAAATCTCCGTC
* * *
31902359 AAAGG-AAAGCCTCTGTGGAAAACTCCG-G
1 AAAGGAAAAGCCTTTGTGGAAATCTCCGTC
* *
31902387 ACAGGAAAAGCCTTTGTGGTAATCTCC
1 AAAGGAAAAGCCTTTGTGGAAATCTCC
31902414 ATAAATGAAG
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
28 4 0.09
29 35 0.80
30 5 0.11
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (30 bp):
AAAGGAAAAGCCTTTGTGGAAATCTCCGTC
Found at i:31904812 original size:33 final size:33
Alignment explanation
Indices: 31904769--31904881 Score: 154
Period size: 33 Copynumber: 3.4 Consensus size: 33
31904759 CGGCAGTCCA
* *
31904769 ACGATGGTGGAGTGGTGGTCCAACGGCGGTGTG
1 ACGATGGTGGAGTGGTGGTCCGACGGCGGTGCG
* *
31904802 GCGATGGTGGAGTGGTGGTCCGACAGCGGTGCG
1 ACGATGGTGGAGTGGTGGTCCGACGGCGGTGCG
* * *
31904835 ACAATGGTGGAGTGGTGGTCTGACGGCAGTGCG
1 ACGATGGTGGAGTGGTGGTCCGACGGCGGTGCG
*
31904868 ACTATGGTGGAGTG
1 ACGATGGTGGAGTG
31904882 TTAGCCCGAC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 70 1.00
ACGTcount: A:0.16, C:0.15, G:0.48, T:0.21
Consensus pattern (33 bp):
ACGATGGTGGAGTGGTGGTCCGACGGCGGTGCG
Found at i:31907310 original size:27 final size:27
Alignment explanation
Indices: 31907275--31907340 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
31907265 ATCTATTGTT
* *
31907275 CCTTAAGAGTT-TGCCACACATATTGTC
1 CCTTCAGAGTTCT-CCACACATATTATC
* * *
31907302 TCTTCAGAGTTCTCCAGACATGTTATC
1 CCTTCAGAGTTCTCCACACATATTATC
31907329 CCTTCAGAGTTC
1 CCTTCAGAGTTC
31907341 ATCGGAGATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (27 bp):
CCTTCAGAGTTCTCCACACATATTATC
Found at i:31907561 original size:29 final size:28
Alignment explanation
Indices: 31907482--31907641 Score: 214
Period size: 29 Copynumber: 5.7 Consensus size: 28
31907472 CCTTAAATCT
* *
31907482 CCACAAAGGCTTCCATTTTCACAAATTG
1 CCACAAAGGCTTCCATTTTCATAGATTG
* *
31907510 CCACAAAGGCTACCATTTTCATATATTG
1 CCACAAAGGCTTCCATTTTCATAGATTG
*
31907538 CCACAAAAGCTTCCATTTCTCATAGATTG
1 CCACAAAGGCTTCCATTT-TCATAGATTG
*
31907567 CCACAAAAGCTTCCATTTTTCATAGATTG
1 CCACAAAGGCTTCCA-TTTTCATAGATTG
* * *
31907596 GCACAAAGGCTTCCATTTT-ATAGACTA
1 CCACAAAGGCTTCCATTTTCATAGATTG
31907623 CCACAAAGGCTTCCATTTT
1 CCACAAAGGCTTCCATTTT
31907642 TCTAGCGTGT
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
27 24 0.20
28 45 0.38
29 47 0.39
30 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.31
Consensus pattern (28 bp):
CCACAAAGGCTTCCATTTTCATAGATTG
Found at i:31907642 original size:56 final size:57
Alignment explanation
Indices: 31907482--31907643 Score: 220
Period size: 56 Copynumber: 2.9 Consensus size: 57
31907472 CCTTAAATCT
* * * *
31907482 CCACAAAGGCTTCCATTTTCACAAATTGCCACAAAGGCTACCA-TTTTCATATATTG
1 CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
* *
31907538 CCACAAAAGCTTCCATTTCTCATAGATTGCCACAAAAGCTTCCATTTTTCATAGATTG
1 CCACAAAGGCTTCCATTT-TCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
* * *
31907596 GCACAAAGGCTTCCATTTT-ATAGACTACCACAAAGGCTTCCATTTTTC
1 CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTC
31907644 TAGCGTGTTC
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
56 43 0.46
57 22 0.24
58 28 0.30
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (57 bp):
CCACAAAGGCTTCCATTTTCATAGATTGCCACAAAGGCTTCCATTTTTCATAGATTG
Found at i:31919917 original size:18 final size:18
Alignment explanation
Indices: 31919896--31919936 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
31919886 ATTCGGGTAA
*
31919896 AACCGAAAAAATTCGGTT
1 AACCGAAAAAATTCAGTT
**
31919914 AACCGACCAAATTCAGTT
1 AACCGAAAAAATTCAGTT
31919932 AACCG
1 AACCG
31919937 GTCGGTTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (18 bp):
AACCGAAAAAATTCAGTT
Found at i:31920135 original size:18 final size:18
Alignment explanation
Indices: 31920112--31920151 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
31920102 ACCTAATCCA
* *
31920112 AACCCAAGTATCCTACCC
1 AACCCAAGTACCCAACCC
*
31920130 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
31920148 AACC
1 AACC
31920152 TAATAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.47, G:0.03, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:31920141 original size:13 final size:13
Alignment explanation
Indices: 31920125--31920149 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31920115 CCAAGTATCC
31920125 TACCCAACCCAAT
1 TACCCAACCCAAT
31920138 TACCCAACCCAA
1 TACCCAACCCAA
31920150 CCTAATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
TACCCAACCCAAT
Found at i:31920332 original size:9 final size:9
Alignment explanation
Indices: 31920284--31920334 Score: 59
Period size: 9 Copynumber: 5.7 Consensus size: 9
31920274 TTCAATTCTT
31920284 TTAATTCGAG
1 TTAATTCG-G
31920294 -TAATTCGG
1 TTAATTCGG
*
31920302 GTAATTCGG
1 TTAATTCGG
*
31920311 TTAATTTGG
1 TTAATTCGG
*
31920320 TTAATTCGA
1 TTAATTCGG
31920329 TTAATT
1 TTAATT
31920335 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 1 0.03
9 35 0.97
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (9 bp):
TTAATTCGG
Found at i:31920335 original size:18 final size:18
Alignment explanation
Indices: 31920284--31920335 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
31920274 TTCAATTCTT
* *
31920284 TTAATTCGAGTAATTCGG
1 TTAATTCGATTAATTTGG
* *
31920302 GTAATTCGGTTAATTTGG
1 TTAATTCGATTAATTTGG
31920320 TTAATTCGATTAATTT
1 TTAATTCGATTAATTT
31920336 TTAACCAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (18 bp):
TTAATTCGATTAATTTGG
Found at i:31934437 original size:11 final size:11
Alignment explanation
Indices: 31934421--31934457 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
31934411 TGGGCCCATG
31934421 TGGGCCGAATA
1 TGGGCCGAATA
*
31934432 TGGGCC--ATG
1 TGGGCCGAATA
31934441 TGGGCCGAATA
1 TGGGCCGAATA
31934452 TGGGCC
1 TGGGCC
31934458 ATGAGCCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.19, C:0.22, G:0.41, T:0.19
Consensus pattern (11 bp):
TGGGCCGAATA
Found at i:31934441 original size:20 final size:20
Alignment explanation
Indices: 31934411--31934460 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
31934401 TACGAGCGTG
31934411 TGGGCCCATGTGGGCCGAATA
1 TGGG-CCATGTGGGCCGAATA
31934432 TGGGCCATGTGGGCCGAATA
1 TGGGCCATGTGGGCCGAATA
31934452 TGGGCCATG
1 TGGGCCATG
31934461 AGCCCATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 25 0.86
21 4 0.14
ACGTcount: A:0.18, C:0.22, G:0.40, T:0.20
Consensus pattern (20 bp):
TGGGCCATGTGGGCCGAATA
Found at i:31934571 original size:27 final size:27
Alignment explanation
Indices: 31934532--31934704 Score: 204
Period size: 27 Copynumber: 6.4 Consensus size: 27
31934522 GGAAAGCTTA
*
31934532 TAAAATGATCGTAATACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
31934559 TAAAATGACCGTAATAACCCTGTAGTGG
1 TAAAATGACCGTAATACCCCTGTAG-GG
* * *
31934587 -AAAATGACTGTAATGCCCCTATAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
31934613 TAAAATGATCGTAATACCCCTGTAAGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
31934640 TAAAATGACCGTAATGCCCCTGTAAGG
1 TAAAATGACCGTAATACCCCTGTAGGG
** * *
31934667 TAAAATGATTGTAATACCCTTGTAGGA
1 TAAAATGACCGTAATACCCCTGTAGGG
*
31934694 TAAAATAACCG
1 TAAAATGACCG
31934705 GAATGCCCTG
Statistics
Matches: 122, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.02
27 118 0.97
28 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Found at i:31934627 original size:81 final size:81
Alignment explanation
Indices: 31934531--31934699 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
31934521 CGGAAAGCTT
*
31934531 ATAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATAACCCTGT-AGTGGAAAATGAC
1 ATAAAATGATCGTAATACCCCTGTAAGGTAAAATGACCGTAATAACCCTGTAAG-GGAAAATGAC
*
31934595 TGTAATGCCCCTATAGG
65 TGTAATACCCCTATAGG
* ** * *
31934612 GTAAAATGATCGTAATACCCCTGTAAGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGATT
1 ATAAAATGATCGTAATACCCCTGTAAGGTAAAATGACCGTAATAACCCTGTAAGGGAAAATGACT
* *
31934677 GTAATACCCTTGTAGG
66 GTAATACCCCTATAGG
31934693 ATAAAAT
1 ATAAAAT
31934700 AACCGGAATG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 75 0.97
82 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (81 bp):
ATAAAATGATCGTAATACCCCTGTAAGGTAAAATGACCGTAATAACCCTGTAAGGGAAAATGACT
GTAATACCCCTATAGG
Found at i:31934698 original size:54 final size:52
Alignment explanation
Indices: 31934532--31934724 Score: 219
Period size: 54 Copynumber: 3.6 Consensus size: 52
31934522 GGAAAGCTTA
* * *
31934532 TAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATAACCCTGTAGTG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGATCGTAAT-ACCCTGTAG-G
* * *
31934586 GAAAATGACTGTAATGCCCCTATAGGGTAAAATGATCGTAATACCCCTGTAAGG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGATCGTAATA-CCCTGT-AGG
* *
31934640 TAAAATGACCGTAATGCCCCTGTAAGGTAAAATGATTGTAATACCCTTGTAGG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGATCGTAATACCC-TGTAGG
* *
31934693 ATAAAATAACCGGAATG-CCCTGGT-GGGTAAAA
1 -TAAAATGACCGTAATGCCCCT-GTAGGGTAAAA
31934725 GACTATTTTG
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
53 18 0.15
54 100 0.83
55 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (52 bp):
TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGATCGTAATACCCTGTAGG
Found at i:31934807 original size:24 final size:24
Alignment explanation
Indices: 31934749--31934829 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
31934739 TCGAGGTCAA
* * **
31934749 ATGATTGATTTGTCTGTG-GTTAA
1 ATGACTGATTTGTCTGTGATTTGT
*
31934772 ATAACTGATTTGTCTGTG-TTTGGT
1 ATGACTGATTTGTCTGTGATTT-GT
*
31934796 ATGACTGGTTTGTCTGTGATTTGT
1 ATGACTGATTTGTCTGTGATTTGT
31934820 ATGACTGATT
1 ATGACTGATT
31934830 CTGAGCATGG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
23 18 0.38
24 27 0.56
25 3 0.06
ACGTcount: A:0.19, C:0.07, G:0.26, T:0.48
Consensus pattern (24 bp):
ATGACTGATTTGTCTGTGATTTGT
Found at i:31935047 original size:32 final size:31
Alignment explanation
Indices: 31935004--31935139 Score: 148
Period size: 32 Copynumber: 4.3 Consensus size: 31
31934994 GTGATGCTAT
*
31935004 TGATGGCTTTGTGCTGATCATATCACTGTTAC
1 TGATGGCTTTGTGCCGATCATATCACTG-TAC
* * *
31935036 TGATGGTTTTGTACCGATCATATTA-TCGATAC
1 TGATGGCTTTGTGCCGATCATATCACT-G-TAC
* *
31935068 TGATGACTATGTGCCGATCATATCACTGCTAC
1 TGATGGCTTTGTGCCGATCATATCACTG-TAC
* *
31935100 TGATGGCTTTGTGCCAATCATATTACTGTAC
1 TGATGGCTTTGTGCCGATCATATCACTGTAC
*
31935131 TTATGGCTT
1 TGATGGCTT
31935140 GTAGCCATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
31 12 0.14
32 73 0.85
33 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (31 bp):
TGATGGCTTTGTGCCGATCATATCACTGTAC
Found at i:31935088 original size:64 final size:64
Alignment explanation
Indices: 31935004--31935124 Score: 179
Period size: 64 Copynumber: 1.9 Consensus size: 64
31934994 GTGATGCTAT
* * * * * *
31935004 TGATGGCTTTGTGCTGATCATATCACTGTTACTGATGGTTTTGTACCGATCATATTATCGATAC
1 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTATCGATAC
*
31935068 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCAATCATATTA
1 TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTA
31935125 CTGTACTTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 50 1.00
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (64 bp):
TGATGACTATGTGCCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATATTATCGATAC
Found at i:31937917 original size:18 final size:19
Alignment explanation
Indices: 31937896--31937932 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
31937886 CTTGAAAAGT
*
31937896 ATATTGTGTGA-TGTGATG
1 ATATTATGTGATTGTGATG
31937914 ATATTATGTGATTGTGATG
1 ATATTATGTGATTGTGATG
31937933 TTTTTGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (19 bp):
ATATTATGTGATTGTGATG
Found at i:31938201 original size:22 final size:22
Alignment explanation
Indices: 31938173--31938223 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
31938163 AGGAGGAAGA
31938173 TATGTGGCAGTTTATCT-ATAAT
1 TATGTGGCAGTTT-TCTGATAAT
** *
31938195 TATGTGGTTGTTTTTTGATAAT
1 TATGTGGCAGTTTTCTGATAAT
31938217 TATGTGG
1 TATGTGG
31938224 TGGCTTGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.08
22 23 0.92
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.51
Consensus pattern (22 bp):
TATGTGGCAGTTTTCTGATAAT
Found at i:31943600 original size:20 final size:20
Alignment explanation
Indices: 31943572--31943609 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31943562 CTGCAGTTTG
* *
31943572 AAAATTTTCATATTTTTCAT
1 AAAAATTTCATATGTTTCAT
31943592 AAAAATTTCATATGTTTC
1 AAAAATTTCATATGTTTC
31943610 CGATTTAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.50
Consensus pattern (20 bp):
AAAAATTTCATATGTTTCAT
Found at i:31948540 original size:23 final size:23
Alignment explanation
Indices: 31948514--31948560 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
31948504 ACTGGTCCAA
31948514 CCCTCTTAAGAACTCTATATGGT
1 CCCTCTTAAGAACTCTATATGGT
31948537 CCCTCTTAAGAACTCTATATGGT
1 CCCTCTTAAGAACTCTATATGGT
31948560 C
1 C
31948561 GAATGAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (23 bp):
CCCTCTTAAGAACTCTATATGGT
Found at i:31951070 original size:13 final size:13
Alignment explanation
Indices: 31951052--31951077 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31951042 TTGGATCCGT
31951052 ACCAAAACAATCA
1 ACCAAAACAATCA
31951065 ACCAAAACAATCA
1 ACCAAAACAATCA
31951078 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:31961151 original size:13 final size:13
Alignment explanation
Indices: 31961133--31961157 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31961123 CACAAACGAT
31961133 AAAATTTTCACAC
1 AAAATTTTCACAC
31961146 AAAATTTTCACA
1 AAAATTTTCACA
31961158 TATATAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:31963749 original size:24 final size:24
Alignment explanation
Indices: 31963717--31963763 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
31963707 ATGAGTGGTG
31963717 TTGTGAAAAGGAAAGTAAGTTGAA
1 TTGTGAAAAGGAAAGTAAGTTGAA
31963741 TTGTGAAAAGGAAAGTAAGTTGA
1 TTGTGAAAAGGAAAGTAAGTTGA
31963764 CTTCCTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.26
Consensus pattern (24 bp):
TTGTGAAAAGGAAAGTAAGTTGAA
Found at i:31974283 original size:30 final size:30
Alignment explanation
Indices: 31974160--31974498 Score: 276
Period size: 30 Copynumber: 11.2 Consensus size: 30
31974150 GTTGTTACCA
* * *
31974160 CCCTTTTGCATAGTTTGATAGCCAAAGCTAT
1 CCCTTTT-CATAATTTGATAGCCGAAGCCAT
* * *
31974191 CCATTTCCATATTTTGATAGCCGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* ** * ** *
31974221 CCCTTTTCATGATTCAATGGTTGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCG-AAGCCAT
* *
31974251 CCCTATTCATAATTTGATAGCCGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * * *
31974281 CCCATTTCAGAATTCGATAGCTGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
31974311 CCCTTTTCATAATTTGATAGCCGAAGCCAC
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
31974341 CCCTTTTCATAATTTGATAGCCAAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * *
31974371 CCCTTTTTCATAATTCGATGGTC-ATCA-CCAT
1 CCC-TTTTCATAATTTGATAGCCGA--AGCCAT
* * *
31974402 CCCTTTTCGT--TGTTGATAGTCGTCA-CCAT
1 CCCTTTTCATAAT-TTGATAGCCG-AAGCCAT
** *
31974431 CCCTTTTCATAATTCAATAGCCGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* *
31974461 CCCTTTTCATATTTTGATAGCCAAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
31974491 CCCCTTTT
1 -CCCTTTT
31974499 ATTGGTCGAT
Statistics
Matches: 241, Mismatches: 55, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
28 1 0.00
29 23 0.10
30 179 0.74
31 37 0.15
32 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (30 bp):
CCCTTTTCATAATTTGATAGCCGAAGCCAT
Found at i:31974300 original size:90 final size:89
Alignment explanation
Indices: 31974156--31974498 Score: 320
Period size: 90 Copynumber: 3.8 Consensus size: 89
31974146 GATGGTTGTT
* * *
31974156 ACCA-CCCTTTTGCATAGTTTGATAGCCAAAGCTAT-CCATTTCCATATTTTGATAGCCGAAGCC
1 ACCATCCCTTTT-CATAATTTGATAGCCAAAGCTATCCCATTT-CATAATTCGATAGCCGAAGCC
* * *
31974219 ATCCCTTTTCATGATTCAATGGTTGTC
64 ATCCCTTTTCATGATT-GATAGTCGTC
* * * *
31974246 ACCATCCCTATTCATAATTTGATAGCCGAAGCTATCCCATTTCAGAATTCGATAGCTGAAGCCAT
1 ACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCATTTCATAATTCGATAGCCGAAGCCAT
* * *
31974311 CCCTTTTCATAATTTGATAGCCG-A
66 CCCTTTTCATGA-TTGATAGTCGTC
* * * * *
31974335 AGCCACCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTTCATAATTCGATGGTC-ATCA-
1 A-CCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCC-ATTTCATAATTCGATAGCCGA--AG
*
31974398 CCATCCCTTTTCGTTG-TTGATAGTCGTC
62 CCATCCCTTTTC-ATGATTGATAGTCGTC
** * * * * *
31974426 ACCATCCCTTTTCATAATTCAATAGCCGAAGCTATCCCTTTTCATATTTTGATAGCCAAAGCCAT
1 ACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCATTTCATAATTCGATAGCCGAAGCCAT
31974491 CCCCTTTT
66 -CCCTTTT
31974499 ATTGGTCGAT
Statistics
Matches: 206, Mismatches: 35, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
88 1 0.00
89 20 0.10
90 142 0.69
91 41 0.20
92 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (89 bp):
ACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCATTTCATAATTCGATAGCCGAAGCCAT
CCCTTTTCATGATTGATAGTCGTC
Found at i:31979607 original size:51 final size:49
Alignment explanation
Indices: 31979476--31979659 Score: 199
Period size: 51 Copynumber: 3.7 Consensus size: 49
31979466 GAAAGTGATG
* * *
31979476 GTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAGA-ATGATAT
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-G-TAT
* * * *
31979526 GTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTCT
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TAT
* * *
31979576 GATCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGATAGTGAT
1 G-TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT-AT
* *
31979627 GGTCACATGTGTAGTACTATATTCAGGCTACTA
1 -GTCACATGTGTAGTACTATGTGCAGGCTACTA
31979660 AGTGAACTAG
Statistics
Matches: 111, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
50 42 0.38
51 68 0.61
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (49 bp):
GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAT
Found at i:31985302 original size:30 final size:31
Alignment explanation
Indices: 31985212--31985579 Score: 248
Period size: 30 Copynumber: 12.3 Consensus size: 31
31985202 TTGTTACCAC
* * * *
31985212 CCCTTTTCATAGTTCGATAGTCG-AAGCTAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * *
31985242 CCCTTTCCATATTTTGAGAGCCG-AAGCCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * *
31985272 CCCTTTTCATAATTCGATGGTCGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * *
31985302 CCCTTTTCAT--TGTTAATGGTCGTCA-CCAT
1 CCCTTTTCATAAT-TTGATAGCCGTAAGCCAT
*
31985331 CCCTTTTCATAATTTGATAGCCG-AAGCTAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* *
31985361 CCCTTTTCATAATTGGATAACCG-AAGCCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * *
31985391 CCTTTTTCATAATTTGATAGCC-AAACCCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* *
31985421 CCATTTTCATAATTTGATAGCC-AAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * *
31985451 CCCTTTTCAAAATTCGATGGCCGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * * *
31985481 TCCTTTTCAT--TGTTGATGGTCATCA-CCAT
1 CCCTTTTCATAAT-TTGATAGCCGTAAGCCAT
* *
31985510 CCTTTTTCATAATTTGATAGCCG-AAGCTAT
1 CCCTTTTCATAATTTGATAGCCGTAAGCCAT
* * * *
31985540 CCC-TTTCTATATTTTGATAACCG-ACGTCAT
1 CCCTTTTC-ATAATTTGATAGCCGTAAGCCAT
31985570 CCCTTTTCAT
1 CCCTTTTCAT
31985580 TGGTCGATGA
Statistics
Matches: 272, Mismatches: 53, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
28 2 0.01
29 53 0.19
30 209 0.77
31 8 0.03
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (31 bp):
CCCTTTTCATAATTTGATAGCCGTAAGCCAT
Found at i:31985330 original size:29 final size:30
Alignment explanation
Indices: 31985268--31985344 Score: 120
Period size: 29 Copynumber: 2.6 Consensus size: 30
31985258 AGAGCCGAAG
*
31985268 CCATCCCTTTTCATAATTCGATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
**
31985298 CCATCCCTTTTCATTGTT-AATGGTCGTCA
1 CCATCCCTTTTCATAATTCAATGGTCGTCA
31985327 CCATCCCTTTTCATAATT
1 CCATCCCTTTTCATAATT
31985345 TGATAGCCGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 26 0.62
30 16 0.38
ACGTcount: A:0.19, C:0.30, G:0.10, T:0.40
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTCAATGGTCGTCA
Found at i:31985353 original size:89 final size:89
Alignment explanation
Indices: 31985240--31985545 Score: 366
Period size: 89 Copynumber: 3.4 Consensus size: 89
31985230 AGTCGAAGCT
* * * *
31985240 ATCCCTTTCCATATTTTGAGAGCCGAAGCCATCCCTTTTCATAATTCGATGGTCGTCACCATCCC
1 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGGCCGTCACCATCCC
* *
31985305 TTTTCATTGTTAATGGTCGTCACC
66 TTTTCATTGTTGATGGTCATCACC
* * ** *
31985329 ATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTGGATAACCG-AAGCCATCC
1 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGGCCGTCA-CCATCC
* * * *
31985393 TTTTTCATAAT-TTGATAGCCA-AACCC
65 CTTTTCAT--TGTTGATGGTCATCA-CC
* * * *
31985419 ATCCATTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCAAAATTCGATGGCCGTCACCATTCC
1 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGGCCGTCACCATCCC
31985484 TTTTCATTGTTGATGGTCATCACC
66 TTTTCATTGTTGATGGTCATCACC
* *
31985508 ATCCTTTTTCATAATTTGATAGCCGAAGCTATCCCTTT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTT
31985546 CTATATTTTG
Statistics
Matches: 179, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
88 2 0.01
89 106 0.59
90 69 0.39
91 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (89 bp):
ATCCCTTTTCATAATTTGATAGCCGAAGCCATCCCTTTTCATAATTCGATGGCCGTCACCATCCC
TTTTCATTGTTGATGGTCATCACC
Found at i:31985421 original size:119 final size:119
Alignment explanation
Indices: 31985198--31985430 Score: 288
Period size: 119 Copynumber: 2.0 Consensus size: 119
31985188 TAAAATCATG
* * * * * * *
31985198 ATGGTTGTTACCACCCCTTTTCATAGTTCGATAGTCGAAGCTATCCCTTTCCATATTTTGAGAGC
1 ATGGTCGTCACCACCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTGGAGAAC
* * ** *
31985263 CGAAGCCATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATTGTTA
66 CGAAGCCATCCCTTTTCATAATTCGATAGCCAACACCATCCATTTTCATTGTTA
* * * *
31985317 ATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTGGATAAC
1 ATGGTCGTCACCACCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTGGAGAAC
* *
31985382 CGAAGCCATCCTTTTTCATAATTTGATAGCCAA-ACCCATCCATTTTCAT
66 CGAAGCCATCCCTTTTCATAATTCGATAGCCAACA-CCATCCATTTTCAT
31985431 AATTTGATAG
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
118 1 0.01
119 94 0.99
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (119 bp):
ATGGTCGTCACCACCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATAATTGGAGAAC
CGAAGCCATCCCTTTTCATAATTCGATAGCCAACACCATCCATTTTCATTGTTA
Found at i:31985519 original size:179 final size:179
Alignment explanation
Indices: 31985212--31985579 Score: 522
Period size: 179 Copynumber: 2.1 Consensus size: 179
31985202 TTGTTACCAC
* * * * * * * * *
31985212 CCCTTTTCATAGTTCGATAGTCGAAGCTATCCCTTTCCATATTTTGAGAGCCGAAGCCATCCCTT
1 CCCTTTTCATAATTTGATAGCCAAACCCATCCATTTCCATAATTTGAGAGCCAAAGCCATCCCTT
* * *
31985277 TTCATAATTCGATGGTCGTCACCATCCCTTTTCATTGTTAATGGTCGTCACCATCCCTTTTCATA
66 TTCAAAATTCGATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCACCATCCCTTTTCATA
31985342 ATTTGATAGCCGAAGCTATCCCTTT-TCATAATTGGATAACCGAAGCCAT
131 ATTTGATAGCCGAAGCTATCCCTTTCT-ATAATTGGATAACCGAAGCCAT
* * *
31985391 CCTTTTTCATAATTTGATAGCCAAACCCATCCATTTTCATAATTTGATAGCCAAAGCCATCCCTT
1 CCCTTTTCATAATTTGATAGCCAAACCCATCCATTTCCATAATTTGAGAGCCAAAGCCATCCCTT
* * *
31985456 TTCAAAATTCGATGGCCGTCACCATTCCTTTTCATTGTTGATGGTCATCACCATCCTTTTTCATA
66 TTCAAAATTCGATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCACCATCCCTTTTCATA
* * * *
31985521 ATTTGATAGCCGAAGCTATCCCTTTCTATATTTTGATAACCGACGTCAT
131 ATTTGATAGCCGAAGCTATCCCTTTCTATAATTGGATAACCGAAGCCAT
31985570 CCCTTTTCAT
1 CCCTTTTCAT
31985580 TGGTCGATGA
Statistics
Matches: 165, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
179 164 0.99
180 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (179 bp):
CCCTTTTCATAATTTGATAGCCAAACCCATCCATTTCCATAATTTGAGAGCCAAAGCCATCCCTT
TTCAAAATTCGATGGCCGTCACCATCCCTTTTCATTGTTAATGGTCATCACCATCCCTTTTCATA
ATTTGATAGCCGAAGCTATCCCTTTCTATAATTGGATAACCGAAGCCAT
Found at i:31986373 original size:21 final size:23
Alignment explanation
Indices: 31986349--31986396 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
31986339 ATGATAATTT
31986349 GTTTTACTTTA-TT-TTTACTTA
1 GTTTTACTTTATTTATTTACTTA
31986370 G-TTTA-TTTATTTATTTACTTA
1 GTTTTACTTTATTTATTTACTTA
31986391 -TTTTAC
1 GTTTTAC
31986397 CTTTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 4 0.17
20 6 0.26
21 13 0.57
ACGTcount: A:0.21, C:0.08, G:0.04, T:0.67
Consensus pattern (23 bp):
GTTTTACTTTATTTATTTACTTA
Found at i:31992909 original size:15 final size:15
Alignment explanation
Indices: 31992889--31992917 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
31992879 TTTTACTTCT
31992889 CAAAAGCACTTTTTC
1 CAAAAGCACTTTTTC
31992904 CAAAAGCACTTTTT
1 CAAAAGCACTTTTT
31992918 AAAAGTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (15 bp):
CAAAAGCACTTTTTC
Found at i:31997801 original size:34 final size:34
Alignment explanation
Indices: 31997763--31997827 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
31997753 AAGTATCTTG
31997763 TATTTGAAATGGTTTCAGCTAACAATTTCAGTCC
1 TATTTGAAATGGTTTCAGCTAACAATTTCAGTCC
31997797 TATTTGAAATGGTTTCAGCTAACAATTTCAG
1 TATTTGAAATGGTTTCAGCTAACAATTTCAG
31997828 CTCAATTATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (34 bp):
TATTTGAAATGGTTTCAGCTAACAATTTCAGTCC
Found at i:32001988 original size:113 final size:113
Alignment explanation
Indices: 32001790--32002015 Score: 416
Period size: 113 Copynumber: 2.0 Consensus size: 113
32001780 GCAACATGTC
* * *
32001790 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTGGTTCTTTTG
1 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
32001855 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
66 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
*
32001903 AGTTAATCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
1 AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
32001968 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
66 GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
32002016 CTGAGAAACC
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
113 109 1.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.42
Consensus pattern (113 bp):
AGTTAAGCATACAATATTAGAAGTTTTTCATTCCATGAATTGGTGTTTCTTATCTAGTTCTTCTA
GTTAGATCCTCTAAGATTTTAAGCAGATAAGTTGTTCCAAGTCATTGT
Found at i:32009591 original size:7 final size:7
Alignment explanation
Indices: 32009575--32009610 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
32009565 CCAATTTGTT
32009575 ATGC-TG
1 ATGCTTG
32009581 ATGCTTG
1 ATGCTTG
32009588 ATGCTTG
1 ATGCTTG
32009595 ATGCTTG
1 ATGCTTG
32009602 ATGCTTG
1 ATGCTTG
32009609 AT
1 AT
32009611 ACCTTAGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.14
7 25 0.86
ACGTcount: A:0.17, C:0.14, G:0.28, T:0.42
Consensus pattern (7 bp):
ATGCTTG
Found at i:32016054 original size:234 final size:235
Alignment explanation
Indices: 32015643--32016106 Score: 675
Period size: 234 Copynumber: 2.0 Consensus size: 235
32015633 AATTAAATAA
32015643 ATGATGTTTAGAAAATGAATCTAAAAAAAATATATAAAATAAAATGGGAGGGGTGCAACACGAGG
1 ATGATGTTTAGAAAATGAATCTAAAAAAAATATATAAAAT-AAATGGGAGGGGTGCAACACGAGG
* * *
32015708 ACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACACTCGACTGCGGAGTTCTT
65 ACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACACTAGACTGCGAAGTTCTG
* * * *
32015773 ATGGGATCCGATGCATTAGTGCTAGTATGATCGCACCCGTGAACTCTTGCGCAATCTATTTATAT
130 ATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACCATCAACTCTTGCGCAATCTATTTATAT
*
32015838 GAAGGATGCACCTTATCGCACTTGCACCTCGAATTAGTTAC
195 AAAGGATGCACCTTATCGCACTTGCACCTCGAATTAGTTAC
** * *
32015879 ATGATGTTTAGAAAATGCAA-CTAAAAAAAAT-TATATGAT-AATGGGAGGGGTGCAGCACTAGG
1 ATGATGTTTAGAAAATG-AATCTAAAAAAAATATATAAAATAAATGGGAGGGGTGCAACACGAGG
* **
32015941 ACTTCCCAAGGAGGTCACCCATCCTAGTACTACTCTCGCTCAAGCATGCTTAG-CTGCGAAGTTC
65 ACTTCCCAA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACAC-TAGACTGCGAAGTTC
*
32016005 TGATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACTATCAACTCTTGCGCAATCTATTTAT
128 TGATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACCATCAACTCTTGCGCAATCTATTTAT
* * * * *
32016070 GTAAAGGCTGCCCCTTATCGTACTTGCGCCTCGAATT
193 ATAAAGGATGCACCTTATCGCACTTGCACCTCGAATT
32016107 TGAATAGAAA
Statistics
Matches: 204, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
233 30 0.15
234 136 0.67
235 8 0.04
236 28 0.14
237 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (235 bp):
ATGATGTTTAGAAAATGAATCTAAAAAAAATATATAAAATAAATGGGAGGGGTGCAACACGAGGA
CTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACACTAGACTGCGAAGTTCTGA
TGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACCATCAACTCTTGCGCAATCTATTTATATA
AAGGATGCACCTTATCGCACTTGCACCTCGAATTAGTTAC
Found at i:32016990 original size:301 final size:302
Alignment explanation
Indices: 32015869--32025070 Score: 9561
Period size: 301 Copynumber: 30.6 Consensus size: 302
32015859 TTGCACCTCG
*
32015869 AATTAGTTACATGATGTTTAGAAAATGCAACTAAAAAAAA-TTATATG--AT--AATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * *
32015929 TGCAGCACTAGGACTTCCCAAGGAGGTCACCCATCCTAGTACTACTCTCGCTCAAGCATGCTTAG
66 TGCAACACGAGGACTTCCCAA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * **
32015994 CTGC-GAAGTTCTGATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACTATCAACTCTTGCG
130 CTGCAG-AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *
32016058 CAATCTATTTATGTAAAGGCTGCCCCTTATCGTACTTGCGCCTCGAATTTGAATAG-AAATTTGA
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAT-GCAAATTCGA
* ** * *
32016122 CCAAATAACGTTTCAAAAGATTTACCTCGCAGAAC-AAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
** * *
32016166 AATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAATTTTTTTTTGTTCTGAAATAAAATGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAA----AATTT-ATATGAAATAAAATGGG
32016230 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
61 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* ** * * ** *
32016295 TTAACTGTAGAGTTCCAACGGGATCTGGTGCATTAGTGCTAATATGATCACACCCGTCAACTCTT
126 TTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
* * * *
32016360 GCGCAATCTATTTATATAAAGGCTACCCCTTATCGAATTTGCGCCTCGAATTTGAATGAAAATTC
191 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTC
* * * * *
32016425 GACCAAATAACCTTTCGAATGATTTATTTCGCCAAATGCAAATAAGT
256 GACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
32016472 AATTAGTTACACGAAGTTTAGAAAATGCAACT-AAAAAAA-TTGTATCAAAT-AAATCGGGAGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAAT-GGGAGGG
* * * * **
32016534 GTGCAACACGAGGAGTTTCCAGGAGGTCACCCATCCTAGTAGTACTCTCGCCCAAGCAATCTTAA
65 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * * * * **
32016599 CTGCGGAGTTCTGATAGGG-TCCGGTGAATTAGTCCTCGTTTGATCACACCTGTAAACTCAGGCG
130 CTGCAGAGTTCTGAT-GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* *
32016663 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCAAATTT-AATTGCGAATTCGA
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAA-TGCAAATTCGA
** * *
32016727 CCAAATAACGTTTCAAATGATTTCCTTCGCAAAACACAAATAAGT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
*
32016772 AATTA-TATACACGGTGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGA-GG
1 AATTAGT-TACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGG
* ** * * * * **
32016835 ATGCAACACGAGGACTTCCCGGGAGGTCACACATCCTTGTACTACCCTCACCCAAGCTTGCTTAA
65 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * ** *
32016900 CTGTAGAGTTCTAATGGGATCCGGTGCATTAGTGCCAGTATGATCGCATCCGTCAACTCTTGCGC
130 CTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * * * *
32016965 AATCTATTTACATAAAGGTTGCCCCTTATCGCACTTGCGCCTCAAAATTGATTGCAAATTTGATC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * *
32017030 AAATAACGTTTCAAATGATTTGTTTCGCAAAAGGCAAATAGCT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
32017073 AATTATTTACATGATGTTTAGAAAATGCAACT-AAAAAAATTTATATGAAATAAAATGGGAGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * *
32017137 TGCAACAC-ATGGACATCCCAGGAGGTCACCCATTCTAGTACAACTCTCGCCCAGGCACGCTTTA
66 TGCAACACGA-GGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * *
32017201 -TAGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTTGTATGATCGCACCCGTCAACTTTTGCG
130 CT-GCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * * * * *
32017265 CAATCAATTTATATAAAAGCTGCCCCATATTGTACTTG-ACCTCGAATTTGAATGCAAGTTCGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* *
32017329 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGTAAATAGCT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* *
32017373 AATTACTTATACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* *** *
32017438 TGCAACACGAGGACTTCCCAAGCGGTCACCCATCCTAGTAC-AGCTCTTATCCAAGCACGCTTAC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTA-CTCTCGCCCAAGCACGCTTAA
* * ** *
32017502 CTG-AGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGACCGCACTTGTCAACTATT--G
130 CTGCA-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *** * * * *
32017564 C-A-C-----ATGT---GCCT-CAAATT-T-GCACATGTGCCTCGAATTTGATTGCAAATTTGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* *
32017616 CAAATAACGTTTCAAATGATTTGTTTCGCCAAAA-GAAAATAACT
259 CAAATAACGTTTCAAATGATTTATTTCG-CAAAACGCAAATAACT
* * *
32017660 AATTAGTTACACGATGTTTAGAAAATACAACT-AAAAAAATGTATATGAAATAAAATAGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * * *
32017724 TGCAACAAGAGGACGTCACAGGAGGTCACCCATCCTAGTAGTACTCTCCCCCAAGCACTCTTAAC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * ** * *
32017789 TGCGGAGTTCTGATGGGGTCCAGTGAATTAGTGATGGTATGATCGCACCTATAAACTCGTGCGCA
131 TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * *
32017854 ATCTATTTATATAAAGGCTACCCTTTATCGCACTTGCGCCTCGAATTTGATTGCAAATTCAACCA
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
32017919 AATAACGTTTCAAATGATTTCCTTT-GTAAAACGCAAATAAGT
261 AATAACGTTTCAAATGATTT-ATTTCGCAAAACGCAAATAACT
*
32017961 AATTA-TATACACGGTGTTTAGAAAATGCAACT-AAAAAAATTTATATGAAATAAAATGGGA-GG
1 AATTAGT-TACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * * * * * * *
32018023 ATACAGCACGAGGACTTCCTAGGAGGTCACCCATCCTAATACTACCCTCACTCAAGCTCGCTTAA
65 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * * * * *
32018088 TTGTAGAGTGT-TAATGGGATCCGCTGCATTAGTGCTAGTATGATCGCATCCGTCAGCTCTGGCA
130 CTGCAGAGT-TCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *
32018152 CAA-CTATTTATATAAAGGCTGCCTCTTATCACACTTGCACCTCGAATTTGAATGCAAATTCGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* ** * * *
32018216 CAAATAACGTTTCAAATGATTTGTTTAACAAAAAGCAAATTATT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * * *
32018260 AATCAGTTGCACGTTGTTTAGAAAATACAACT-AAAAAAATTTATATGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * *
32018324 TGCAACACGAGGACATCCCAGGAGGTCAACCATCCTAGTACTACTTTCGCCCAAGCATGCTTTAC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * * *
32018389 AGCAGAGTTCTGATGGGACCCAGTGCATTAGTGCTGGTATGATCACACCCGTAAACTTTTCCGCA
131 TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * *
32018454 ATCAATTTATATAGAA-GCTACCCCATATCGTACTTGCGCCTCGAATTTGAATGCAAATTCGACC
196 ATCTATTTATATA-AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * *
32018518 AAATAA-GTTTAAAATGATTTATTTCACAAAATGAAAATACCT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *****
32018560 AATTATTTACACGATGTTTAGAAAAGGCAACTAAATTTTTTTTATATGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * *
32018625 TGCAACATGAAGACTTCCTAGGAGGTCACCCATCCTACTACTACTCTCACCCAAGCACGCTT-AC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * ** *
32018689 CGAAGGAGTTTTGATGGGATCTAGTGCATTA-TAGCTGGTATGATCGCACCTGTCAACT-TGTGC
131 TGCA-GAGTTCTGATGGGATCCGGTGCATTAGT-GCTGGTATGATCGCACCCGTCAACTCT-TGC
* *
32018752 GCAATCTATTTATATAAAGGCTG-CCCTTATCGCACTTGCGCCTCGAATTTGATTACAAATTCGA
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * * *
32018816 CCAAATAACGTTGCAAGTGATTTGTTTCGCTAAAA-GTAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGC-AAAACGCAAATAACT
** *
32018861 AATTAGTTACACGATGTTTAGAAAAT---A-T-AAAAAAAGGTATATGAAATAAAATGTGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * * * *
32018921 TGCAACATGAGGACATCCCAGGAGGTCATCCATCCTAGTAGTACTCTTGCCCAATCACTCTTAAC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
** * * * * * * ** *
32018986 TGTGGAGTTCTGA-GGGGTCCAGTGAATTAG-GTTGGTATGATCGCACCTGTAAACTCGAGCGTA
131 TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * * * * * * * *
32019049 ATCGATTTAAATAAAGGCTTCCCTTTATCGTACTTGCACCTCAAATTTGATTGTAAATTTGACCA
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
32019114 AA-AACATTTCAAATGATTTCCTTT-GCAAAACACAAATAAGC-
261 AATAACGTTTCAAATGATTT-ATTTCGCAAAACGCAAATAA-CT
* *
32019155 AATTA-TATACACGGTATTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGA-GG
1 AATTAGT-TACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * * * ** ** *
32019218 ATGTAGCACGAGGACTTCCCAGGAGATCACCCAACCTAGTACTAC-CTTTACTAAAGCTCGCTTA
65 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTC-TCGCCCAAGCACGCTTA
* * * * * * * *
32019282 ACTGTAGAGTGCTAATGGGACCCGGTGCTTTAGTGCTAGTATGATCGCATCCGTCAACTCTAGCG
129 ACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * *
32019347 CAATCTATTTATATAAATGCTGCCCCTTATTGCACTTGTGCCTCGAATTTGAATGTAAATTCGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* * * *
32019412 CAAATAATGTTTCAAATGATTTGTTTCGCAAAAAGCAAAAAACT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
32019456 AATTAGTTACACGATGTTTAGAAAATACAGCTAAAAAAAA-TTATATGAAATAAAATGGGAGGAG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * *
32019520 TGCAACACGAGGA-TATCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAGGCACACTTTA
66 TGCAACACGAGGACT-TCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * * * *
32019584 CAGCGGTGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATTATCGCACCCGTAAACTTTTGCAC
130 CTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * *
32019649 AAACAATTTATATAAAGGCTGCCCCTTATCGTACTTGTGCCTCGAATTTGAATGCAAATTCGACC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * **
32019714 AAATAATGTTTCAAATGATTTACTTCGCAAAACAAAAATAACT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * * *
32019757 AATTAGTTCCACGATGTTTAGAAAATACAAC-AAAAAGAATTTTTTTATGAAATAAAATGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA-AA-ATTTATATGAAATAAAATGGGAGG
* * * **
32019821 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTCCTACTTTTACCCAAGCACGCTTA
64 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * * * * *
32019886 GCTTCAGAGTTCTGACGGGATTCGGTGCATTAGTGCTAGTATGGTCGCACTCGTCAACTCTT-CT
129 ACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC-
* * * * *
32019950 GTAATCTATATATATAAAGGCTACCCCTTATCGCACTTGCACCTCGAATTTGATTGCAAATTCGA
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * *
32020015 CCAAATAACATTTGAAATGATTTCTTTC-CAAAAACGCAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGC-AAAACGCAAATAACT
* *** * **
32020060 AATTAGTTACACGATGTTTAGAAAATGCAATTAAAAATTGTTTTTTTACAAAATAAAATGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA--AAATTTATATGAAATAAAATGGGAGG
* * * * ** **
32020125 GGTGCAACACGAGGACTTTCTAACAAGTTGCCCATCCTAGTACGGCTCTCGCCCATA--AGCGCT
64 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGCA-CGCT
* * * * * *
32020188 TAACTGCGGAGTTCTGATGGGATCTGGCGCATTAGTGCGGGTACGATCACACCCGTCAACTCTTG
127 TAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTG
* * *
32020253 CGCAATCTATTTATATAAAGGCTGCTCGTTATCGCACTTGCGCCTCGAATTTGAATGTAAATTCG
192 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
** * * *
32020318 ACCAAATAACGTTTCAAATTCTTTATTTCGAAAAACGCGAATAAGT
257 ACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
32020364 AATTACTTACACAATGTTTGGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACT-AAAAA-AAATTTATATGAAATAAAATGGGAGG
* * * ** *
32020429 GGTGCAACACGTGGACTTCCCAA-AGGGTCACCCAACCTAGTACTGCTCTTTCCCAAGCAAGCTT
64 GGTGCAACACGAGGACTTCCCAAGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * * ** * * *
32020493 AATTGCGGAGTTTTGATTGGATCTAGTGC-TTAAGTGCGGGTATGATCGCACCCATCAACTATTG
128 AACTGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTG
* * * *
32020557 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGTACTTGCGCCTCAAATTTGACTGGAAATTCG
192 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
* * *
32020622 ACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACACAAATAACT
257 ACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* **** * *
32020668 AATTAGTTACATGATGTTTAGAAAATGCAACTAAAATTTTTTTCTACGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * *
32020733 TGCAAGACGAGGACTTCCCAAGAGGTCACCCACCCAAATACTACTCTC-TCCAGAGCACGCTTAA
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGCACGCTTAA
* * * * * * *
32020797 CTGCAGAGTTCTAATAGGATCCGGTGCATTATTGCTGGTATGATCGCTCTCGTCAACTCTTTCAC
130 CTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * * *
32020862 AATCTATTAATATAAAGGTTGCCCCTTATCGTACATGTGCCTCGAATTTGAATACAAATTCGACC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * * *
32020927 ATATAATGTTTCAAATTATTTATTTCGGAAAACACAAATAAGT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
32020970 AATTAGTTACACGATGTTTGGAAAATGCAACTAAAAAAAA-TTATATGAAATAAAATGAGAGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * * *
32021034 TGCAACATGAGGACTTCCTAAGGGGTCACCCATCTTAGTACTACTCACTCCCAACCACGCTTAAC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * **
32021099 TGC---G----G-T--G---C--T---TAAGTGCTGGTATGGTCGCACCCGTCAACTATTGCATA
131 TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * ** * *
32021146 ATCTATTTAAATAATGGATGCCCCTTATCGCACTTATGCCTCCACTTT-AATTGCAAATTCGACC
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAA-TGCAAATTCGACC
* *
32021210 AAATAATC-TTTCAAATGATTTGTTTCGCAGAACGCAAATAACT
260 AAATAA-CGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
*** * * *
32021253 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTTCTACGAAATAAAACGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA--AAATTTATATGAAATAAAATGGGAGG
* *** * * * *
32021318 GGTGCAACATGAGGACTTCCCAAGAAACCGCCTATCCTAGTACGATTCTCG-CCAAG-AGCGCTT
64 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-CGCTT
* * * * * * * * *
32021381 AACTGCGGAGTTTTGTTGAGATCTGATGCATTAGTGGTGGTATGATCGCACCAGTAAACTCTTGC
128 AACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * *
32021446 GCAATAT-TTTATATAAAGGCTGCCCCTTATTGCACATGCGCCTCGAATTTGAATGCAAATTCGA
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* ** *
32021510 CCAAATAACGTTTCAAATTATTTATTTCGCAAAACAAAAATAAGT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * * * *
32021555 AATTACTTACACGGTGTTCAGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATGGAAGA
1 AATTAGTTACACGATGTTTAGAAAATGCAACT-AAAAA-AAATTTATATGAAATAAAATGGGAGG
* * * *
32021620 GGTGCAACACGAGGACTTCCCAAGAGGTTACCCATTCTAGTACTACTCACCCCCAAGCACGCTTA
64 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * *** * * *
32021685 GCTGCAGAGTTCTGATTGGATTTAGTGC-TTAAGTGCTGGTACGATCGCACCCATGAACTCTTGC
129 ACTGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * *
32021749 GCAATCTATTTATATAAAGGCTGCCCCTTATCCCACTTGCGCCTCGAATTTGATTGGAAATTCG-
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* *
32021813 CCAAAATAACGTTTCAAGTGATTTCTTTCGCAAAACGCAAATAACT
258 CC-AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* *** * *
32021859 AATTAGTTACACGATGCTTAGAAAATGCAACT-AAAATTTTTTTTCCACGAAATAAAAT-GG-GG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTAT--ATGAAATAAAATGGGAGG
* * * * * *
32021921 GGTTCAAGACGAGGACTT--CAGATAGGTCACCCATCCTAGTACTACTCTCTCCCGAGCATGCTT
64 GGTGCAACACGAGGACTTCCCA-AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * * * * *
32021984 AACTTCAGAGTTTTGATGGGATCCGGTGCATTAGTGCTGATATCATCGCACCTGTCAAGTGTTGC
128 AACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * * * ** *
32022049 GCAGTCTCTTTATATAAAGGCTACCCCTTATCGTACTTATGCCTCGAATTTGATTGCAAATTCGA
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * * * *
32022114 CAAAATAACATTTGAAATGATTTCTTTCGCAAAACACAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
*** * ** *
32022159 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTCTACAAAATAAAATGAGAGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA-AAATTTATATGAAATAAAATGGGAGGG
* * * * * * *
32022224 GTGCAACACGAGGACTTTCTAAGAAGTCGCCCATCCTAGTACGACTATCGCCCATG-AGCGCTTA
65 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-CGCTTA
* * *
32022288 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCGGGTATGATCGCACCCGTCAACTCTTGTG
129 ACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *
32022353 CAATCTATTTATATAAAGGCT-ACCCTTATAGCACTTGCGCCTCGAATTTGAATGCAGATTCGAC
194 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* *
32022417 CAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGT
259 CAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * *
32022461 AATTACTTACACGATGTTTGGAAAATGCAACTAAAAAACAAATTTTTATGAAATAAAATGGG-GG
1 AATTAGTTACACGATGTTTAGAAAATGCAACT-AAAAA-AAATTTATATGAAATAAAATGGGAGG
* * * * *
32022525 GGTGTAACACGTGGACTTCCCAA-AGGGTCACCCATCCTAGTACTGCTCTCTCCCAAGCACACTT
64 GGTGCAACACGAGGACTTCCCAAGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* ** * * *
32022589 AACTGC-GAAGTTCTGATTGGATCTAGTGC-TTAAGTGTTGGTATGATTGCACCCATCAACTCTT
128 AACTGCAG-AGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTT
* * * * * ** *
32022652 GCGCAATCTATTTATATAAACGCAGCCCCTTATCGCACTTGTGACTCGAATTTGATTATAAACTC
191 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTC
* * *
32022717 GACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACGTAAATAACT
256 GACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* ***** * * *
32022764 AATTAGTTATACGATGTTTAGAAAATGCAACTAAATTTTTTTTCTACGAAATAAAATGGGAAGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * ** *** *
32022829 TGAAAGACGATGACTTCCCAAGAGGTCATCCATCCTAGTACTACTCTTTCTTTAGCGCGCTTAAC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * ** *
32022894 TGCAGAGTTCTGATGTGATCCGGTGCATTAGTGCTGATATGATTTCACCCGTCAAGTCTTGCGCA
131 TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * *
32022959 ATCTCTTTATATAAAGGGTTCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCA
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
32023024 AATAACGTTTCAAATTCA-TTATTTCGCAAAATGCAAATAAGT
261 AATAACGTTTCAAA-TGATTTATTTCGCAAAACGCAAATAACT
* * * * *
32023066 AATTAGTTACACGATGTTTTGAAAATACAACTAAAAAACATTTATATGAAATAAAATAGGAGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * * * *
32023131 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACTATTCACTCCCAAGCACACTTAAT
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
** * * * * * *
32023196 TGTGGAGTTCTGAT-GGATTCGGTG-ATTAAGTGCTGGTATGGTCGCTCCCTTCAACTCTTGTGT
131 TGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * *
32023259 TATCTATTTTTATAAAGGCTTCCCCTTATCGCACTTGCGCCTCGAATTTGACTTCAAATTCGACC
195 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * *
32023324 AAAAAACATTTTAAATGATTTATTTCACAAAACGCAGATAACT
260 AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* *** *
32023367 AATTAGTTACACGATGTTTAGAAAATGCATCTAAAAATTGTTTTTCTATGAAATAAAATGGGAGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAA--AAATTTATATGAAATAAAATGGGAGG
* * * * * * *
32023432 AGTGCAACATGAGGACTTCCAAAGAAGTCGCCCATCCTAGTACGACTCTCGTCCATGAG-A-GCT
64 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA--AGCACGCT
* * * *
32023495 TAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCAG-ACCCGTTAACACTT
127 TAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC-GCACCCGTCAACTCTT
* * * * * * *
32023559 GCGGAATCTATTTATATAAAGGTTGCCCTTTATCGCGCTTG-GACCTCGAATTAT-ATTCCGAAT
191 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCG-CCTCGAATT-TGAATGCAAAT
* * * * *
32023622 TTGACCCAATAACATTTCAAAAGA-TTACTTTCGCAAAATGCAAATAACT
254 TCGACCAAATAACGTTTCAAATGATTTA-TTTCGCAAAACGCAAATAACT
* * *
32023671 AATCT-GTTACAAGATGTTTAGAAAATGTAAC-AAAACAAAAGTTTATAAGAAAT-AAATCGGGA
1 AAT-TAGTTACACGATGTTTAGAAAATGCAACTAAAA-AAAA-TTTATATGAAATAAAAT-GGGA
* * * *
32023733 GTGGATG-AACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCGCAAGCACTC
62 G-GGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * * * * * * * ** * *
32023797 TTAACAGCAGAGTTCTAATGGAATCCGATGAATTAATGCTAGTTTGATTGCAGTCATCAACTGTT
126 TTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
* *
32023862 GCGTAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTCCGCCTCGAATTTGAATGCAAATTC
191 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTC
* * *
32023927 GACCAAATAAAGTTTCAAATAATTTATGTT-GCAAAACGCAAATAACA
256 GACCAAATAACGTTTCAAATGATTTAT-TTCGCAAAACGCAAATAACT
* ** * * * * *
32023974 AATTAGTTACACCACT-TGGAGAATATGAAACTAAAAAAATATTTATATGAAATAAATTTGGTGG
1 AATTAGTTACACGA-TGTTTAGAAAATGCAACTAAAAAAA-ATTTATATGAAATAAAATGGGAGG
* * * * *
32024038 GGTTCAACACGAGGACTTCCTAAAAGGTCACTCATCCTAGTACTACTCTCGCCTAAGCACGCTTA
64 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * * * *
32024103 ACTGCGGAGTTCTGATGGGATTCGATGCATTAATGCTGATATGATCGCACCGGTCAACTCTTGCG
129 ACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * *
32024168 CAATATATTTATATAAAGGCTGCCACTTAAT-GCACTTGCGCCTCGAATCTGAATGCAACTTCGA
194 CAATCTATTTATATAAAGGCTGCCCCTT-ATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * *
32024232 CTAAATAATGTTTCAAATGATTTATTTCGCAGAACGCAAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* *
32024277 AATTAGTTACACGATTTTTAGAAAATGCAACT-ACAAAAATTTATATGAAATAAAATGGGAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * **
32024341 TGCAACACGAAGACTTCCCAAGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTTGC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * *
32024406 TGCGGAGTTCTAATGGGATCCGGTACATTAGTGCTGGTATGATCGCACCCTTAAACTCTTGCGCA
131 TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* ** * * * * *
32024471 ATGTATTTACGTAAACGCTGCCCCTCATCGCACTTGCGCCTTGAATTTGAATGCAAATTCAAGCA
196 ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
32024536 AATAACGTTTCAAATAATTTAATTCGCAAAACGGAAATAACT
261 AATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
* * * * * * *
32024578 AATTAGTTACGCCACGTTGAGAAAATGCAAC-AAAAAAATAGTTAAATGAAATAAATTGGGAGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAA-ATTTATATGAAATAAAATGGGAGGG
* * * * *
32024642 GTGCAACACGAGAACTTCCCATA-AGATCCCCCATCCTAGTACTACTCTCGCCCCAGCACGTTTA
65 GTGCAACACGAGGACTTCCCA-AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * ** * **
32024706 ACTACAGAGTTCTGATGGGCTCCGGTGCATTAGTGCCAGTATGATAGCACGAGTCAA-TACTTGC
129 ACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT-CTTGC
* * * * *
32024770 ACAATCTATTTATATAAAGGCTGCCCCTAATCGCACTTGCGCATCGAATTTGAATACAAATTCGG
193 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
*
32024835 CCAAATAACGTTTCAAATGATTTATTTCG-AAGAACGCCAATAACT
258 CCAAATAACGTTTCAAATGATTTATTTCGCAA-AACGCAAATAACT
* * * * *
32024880 AATTAGTTAAATGATATTTAGAAAATCCAACTAAAAAAAA--T-TATGAAATAAAATGGAAGGGG
1 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
* * * *
32024942 TGCAACATGATGACTTCCCAAGAGGTCACCCATCCTAGTACTATTCTCGCCCAAGCAAGCTTAAC
66 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * *
32025007 TGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACACGTCAACTCTTGCGC
131 TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
32025071 CTCGAATTTG
Statistics
Matches: 7328, Mismatches: 1368, Indels: 416
0.80 0.15 0.05
Matches are distributed among these distances:
282 2 0.00
283 151 0.02
284 1 0.00
285 15 0.00
286 191 0.03
287 88 0.01
288 11 0.00
289 3 0.00
290 1 0.00
291 1 0.00
292 4 0.00
293 7 0.00
294 88 0.01
295 60 0.01
296 90 0.01
297 37 0.01
298 72 0.01
299 319 0.04
300 1017 0.14
301 1700 0.23
302 1275 0.17
303 1156 0.16
304 776 0.11
305 190 0.03
306 73 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (302 bp):
AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGG
TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
ATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
AATAACGTTTCAAATGATTTATTTCGCAAAACGCAAATAACT
Found at i:32017585 original size:19 final size:19
Alignment explanation
Indices: 32017561--32017601 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
32017551 TTGTCAACTA
32017561 TTGCACATGTGCCTCAAAT
1 TTGCACATGTGCCTCAAAT
*
32017580 TTGCACATGTGCCTCGAAT
1 TTGCACATGTGCCTCAAAT
32017599 TTG
1 TTG
32017602 ATTGCAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (19 bp):
TTGCACATGTGCCTCAAAT
Found at i:32020058 original size:303 final size:302
Alignment explanation
Indices: 32017590--32025070 Score: 7560
Period size: 302 Copynumber: 24.9 Consensus size: 302
32017580 TTGCACATGT
* * * *
32017590 GCCTCGAATTTGATTGCAAATTTGACCAAATAACGTTTCAAATGATTTGTTTCGCCAAAA-GAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCG-CAAAACGCAA
* * *
32017654 ATAACTAATTAGTTACACGATGTTTAGAAAATACAACTAAAAAAA--TGTATATGAAATAAAATA
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATG
* * * * * *
32017717 GGAGGGGTGCAACAAGAGGACGTCACAGGAGGTCACCCATCCTAGTAGTACTCTCCCCCAAGCAC
129 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * * * * ** *
32017782 TCTTAACTGCGGAGTTCTGATGGGGTCCAGTGAATTAGTGATGGTATGATCGCACCTATAAACTC
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * *
32017847 GTGCGCAATCTATTTATATAAAGGCTACCCTTTATCGCACTTGC
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
32017891 GCCTCGAATTTGATTGCAAATTCAACCAAATAACGTTTCAAATGATTTCCTTT-GTAAAACGCAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTT-ATTTCGCAAAACGCAA
* *
32017955 ATAAGTAATTA-TATACACGGTGTTTAGAAAATGCAACTAAAAAAA--TTTATATGAAATAAAAT
65 ATAACTAATTAGT-TACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAAT
* * * * * * * * * *
32018017 GGGA-GGATACAGCACGAGGACTTCCTAGGAGGTCACCCATCCTAATACTACCCTCACTCAAGCT
128 GGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * * * *
32018081 CGCTTAATTGTAGAGTGT-TAATGGGATCCGCTGCATTAGTGCTAGTATGATCGCATCCGTCAGC
193 CGCTTAACTGCAGAGT-TCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * *
32018145 TCTGGCACAA-CTATTTATATAAAGGCTGCCTCTTATCACACTTGC
257 TCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * ** *
32018190 ACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTGTTTAACAAAAAGCAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * * *
32018255 TTATTAATCAGTTGCACGTTGTTTAGAAAATACAACTAAAAAAA--TTTATATGAAATAAAATGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATGG
* * * * *
32018318 GAGGGGTGCAACACGAGGACATCCCAGGAGGTCAACCATCCTAGTACTACTTTCGCCCAAGCATG
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * * * * *
32018383 CTTTACAGCAGAGTTCTGATGGGACCCAGTGCATTAGTGCTGGTATGATCACACCCGTAAACTTT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * * * *
32018448 TCCGCAATCAATTTATATAGAA-GCTACCCCATATCGTACTTGC
260 TGCGCAATCTATTTATATA-AAGGCTGCCCCTTATCGCACTTGC
* * * *
32018491 GCCTCGAATTTGAATGCAAATTCGACCAAATAA-GTTTAAAATGATTTATTTCACAAAATGAAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * ***
32018555 TACCTAATTATTTACACGATGTTTAGAAAAGGCAACTAAATTTTTTTTATATGAAATAAAATGGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
* * * * * *
32018620 AGGGGTGCAACATGAAGACTTCCTAGGAGGTCACCCATCCTACTACTACTCTCACCCAAGCACGC
131 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * ** *
32018685 TT-ACCGAAGGAGTTTTGATGGGATCTAGTGCATTA-TAGCTGGTATGATCGCACCTGTCAACT-
196 TTAACTGCA-GAGTTCTGATGGGATCCGGTGCATTAGT-GCTGGTATGATCGCACCCGTCAACTC
32018747 TGTGCGCAATCTATTTATATAAAGGCTG-CCCTTATCGCACTTGC
259 T-TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
32018791 GCCTCGAATTTGATTACAAATTCGACCAAATAACGTTGCAAGTGATTTGTTTCGCTAAAA-GTAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGC-AAAACGCAA
* ** *
32018855 ATAACTAATTAGTTACACGATGTTTAGAAAAT---ATAAAAAAA--GGTATATGAAATAAAATGT
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGG
* * * * * * * *
32018915 GAGGGGTGCAACATGAGGACATCCCAGGAGGTCATCCATCCTAGTAGTACTCTTGCCCAATCACT
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
** * * * * * * *
32018980 CTTAACTGTGGAGTTCTGA-GGGGTCCAGTGAATTAG-GTTGGTATGATCGCACCTGTAAACTCG
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * * * * * *
32019043 AGCGTAATCGATTTAAATAAAGGCTTCCCTTTATCGTACTTGC
260 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * * * *
32019086 ACCTCAAATTTGATTGTAAATTTGACCAAA-AACATTTCAAATGATTTCCTTT-GCAAAACACAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTT-ATTTCGCAAAACGCAA
* * *
32019149 ATAAGC-AATTA-TATACACGGTATTTAGAAAATGCAACTAAAAAAA-ATTTATATGAAATAAAA
65 ATAA-CTAATTAGT-TACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAA
* * * * * * ** **
32019211 TGGGA-GGATGTAGCACGAGGACTTCCCAGGAGATCACCCAACCTAGTACTAC-CTTTACTAAAG
127 TGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTC-TCGCCCAAG
* * * * * * * *
32019274 CTCGCTTAACTGTAGAGTGCTAATGGGACCCGGTGCTTTAGTGCTAGTATGATCGCATCCGTCAA
191 CACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * *
32019339 CTCTAGCGCAATCTATTTATATAAATGCTGCCCCTTATTGCACTTGT
256 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
32019386 GCCTCGAATTTGAATGTAAATTCGACCAAATAATGTTTCAAATGATTTGTTTCGCAAAAAGCAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * *
32019451 AAACTAATTAGTTACACGATGTTTAGAAAATACAGCTAAAAAAA--ATTATATGAAATAAAATGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATGG
* * * *
32019514 GAGGAGTGCAACACGAGGA-TATCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAGGCAC
130 GAGGGGTGCAACACGAGGACT-TCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * * * * * * *
32019578 ACTTTACAGCGGTGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATTATCGCACCCGTAAACTT
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * * * *
32019643 TTGCACAAACAATTTATATAAAGGCTGCCCCTTATCGTACTTGT
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * **
32019687 GCCTCGAATTTGAATGCAAATTCGACCAAATAATGTTTCAAATGATTTACTTCGCAAAACAAAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * *
32019752 TAACTAATTAGTTCCACGATGTTTAGAAAATACAACAAAAAGAATTTTTTTATGAAATAAAATGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAA-AATTTTTATATGAAATAAAATGG
* * * **
32019817 GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTCCTACTTTTACCCAAGCACG
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * * * * *
32019882 CTTAGCTTCAGAGTTCTGACGGGATTCGGTGCATTAGTGCTAGTATGGTCGCACTCGTCAACTCT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * *
32019947 T-CTGTAATCTATATATATAAAGGCTACCCCTTATCGCACTTGC
260 TGC-GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * *
32019990 ACCTCGAATTTGATTGCAAATTCGACCAAATAACATTTGAAATGATTTCTTTC-CAAAAACGCAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGC-AAAACGCAA
* ** * **
32020054 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAATTAAAAATTGTTTTTTTACAAAATAAAAT
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAA-CAAAAA-AATTTTTATATGAAATAAAAT
* * * * ** **
32020119 GGGAGGGGTGCAACACGAGGACTTTCTAACAAGTTGCCCATCCTAGTACGGCTCTCGCCCATA--
128 GGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGC
* * * * * *
32020182 AGCGCTTAACTGCGGAGTTCTGATGGGATCTGGCGCATTAGTGCGGGTACGATCACACCCGTCAA
192 A-CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* *
32020247 CTCTTGCGCAATCTATTTATATAAAGGCTGCTCGTTATCGCACTTGC
256 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* ** * *
32020294 GCCTCGAATTTGAATGTAAATTCGACCAAATAACGTTTCAAATTCTTTATTTCGAAAAACGCGAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * **
32020359 TAAGTAATTACTTACACAATGTTTGGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAA-ATTTTTATATGAAATAAAATG
* * * **
32020424 GGAGGGGTGCAACACGTGGACTTCCCAA-AGGGTCACCCAACCTAGTACTGCTCTTTCCCAAGCA
129 GGAGGGGTGCAACACGAGGACTTCCCAAGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * * ** * *
32020488 AGCTTAATTGCGGAGTTTTGATTGGATCTAGTGC-TTAAGTGCGGGTATGATCGCACCCATCAAC
193 CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAAC
* *
32020552 TATTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGTACTTGC
257 TCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
32020598 GCCTCAAATTTGACTGGAAATTCGACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACACAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * ** * *
32020663 TAACTAATTAGTTACATGATGTTTAGAAAATGCAACTAAAATTTTTTTCTACGAAATAAAATGGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
* * * * *
32020728 AGGGGTGCAAGACGAGGACTTCCCAAGAGGTCACCCACCCAAATACTACTCTC-TCCAGAGCACG
131 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGCACG
* * * * *
32020792 CTTAACTGCAGAGTTCTAATAGGATCCGGTGCATTATTGCTGGTATGATCGCTCTCGTCAACTCT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * * * * * *
32020857 TTCACAATCTATTAATATAAAGGTTGCCCCTTATCGTACATGT
260 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
32020900 GCCTCGAATTTGAATACAAATTCGACCATATAATGTTTCAAATTATTTATTTCGGAAAACACAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * *
32020965 TAAGTAATTAGTTACACGATGTTTGGAAAATGCAACTAAAAAAA--ATTATATGAAATAAAATGA
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATGG
* * * * * * * *
32021028 GAGAGGTGCAACATGAGGACTTCCTAAGGGGTCACCCATCTTAGTACTACTCACTCCCAACCACG
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * *
32021093 CTTAACTGC---G----G-T--G---C--T---TAAGTGCTGGTATGGTCGCACCCGTCAACTAT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
** * * * **
32021140 TGCATAATCTATTTAAATAATGGATGCCCCTTATCGCACTTAT
260 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
32021183 GCCTCCACTTT-AATTGCAAATTCGACCAAATAATC-TTTCAAATGATTTGTTTCGCAGAACGCA
1 GCCTCGAATTTGAA-TGCAAATTCGACCAAATAA-CGTTTCAAATGATTTATTTCGCAAAACGCA
** * *
32021246 AATAACTAATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTTCTACGAAATAAAA
64 AATAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAA-AATTTTTATATGAAATAAAA
* * *** * * * *
32021311 CGGGAGGGGTGCAACATGAGGACTTCCCAAGAAACCGCCTATCCTAGTACGATTCTCG-CCAAG-
127 TGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * * * * *
32021374 AGCGCTTAACTGCGGAGTTTTGTTGAGATCTGATGCATTAGTGGTGGTATGATCGCACCAGTAAA
192 A-CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * *
32021439 CTCTTGCGCAATAT-TTTATATAAAGGCTGCCCCTTATTGCACATGC
256 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* **
32021485 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACAAAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * **
32021550 TAAGTAATTACTTACACGGTGTTCAGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAA-ATTTTTATATGAAATAAAATG
* * * * * *
32021615 GAAGAGGTGCAACACGAGGACTTCCCAAGAGGTTACCCATTCTAGTACTACTCACCCCCAAGCAC
129 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *** * * *
32021680 GCTTAGCTGCAGAGTTCTGATTGGATTTAGTGC-TTAAGTGCTGGTACGATCGCACCCATGAACT
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACT
*
32021744 CTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCCCACTTGC
258 CTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
32021789 GCCTCGAATTTGATTGGAAATTCG-CCAAAATAACGTTTCAAGTGATTTCTTTCGCAAAACGCAA
1 GCCTCGAATTTGAATGCAAATTCGACC-AAATAACGTTTCAAATGATTTATTTCGCAAAACGCAA
* * * * *
32021853 ATAACTAATTAGTTACACGATGCTTAGAAAATGCAAC-TAAAATTTTTTTTCCACGAAATAAAAT
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTAT--ATGAAATAAAAT
* * * * *
32021917 -GG-GGGGTTCAAGACGAGGACTT--CAGATAGGTCACCCATCCTAGTACTACTCTCTCCCGAGC
128 GGGAGGGGTGCAACACGAGGACTTCCCA-AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * * *
32021978 ATGCTTAACTTCAGAGTTTTGATGGGATCCGGTGCATTAGTGCTGATATCATCGCACCTGTCAAG
192 ACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * * * **
32022043 TGTTGCGCAGTCTCTTTATATAAAGGCTACCCCTTATCGTACTTAT
257 TCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
32022089 GCCTCGAATTTGATTGCAAATTCGACAAAATAACATTTGAAATGATTTCTTTCGCAAAACACAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * ** *
32022154 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTCTACAAAATAAAATGA
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAAT-TTTTATATGAAATAAAATGG
* * * * * * *
32022219 GAGGGGTGCAACACGAGGACTTTCTAAGAAGTCGCCCATCCTAGTACGACTATCGCCCATG-AGC
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-C
* *
32022283 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCGGGTATGATCGCACCCGTCAACTC
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * *
32022348 TTGTGCAATCTATTTATATAAAGGCT-ACCCTTATAGCACTTGC
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* *
32022391 GCCTCGAATTTGAATGCAGATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * *
32022456 TAAGTAATTACTTACACGATGTTTGGAAAATGCAACTAAAAAACAAATTTT-TATGAAATAAAAT
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC--AAAAA-AATTTTTATATGAAATAAAAT
* * * *
32022520 GGG-GGGGTGTAACACGTGGACTTCCCAA-AGGGTCACCCATCCTAGTACTGCTCTCTCCCAAGC
128 GGGAGGGGTGCAACACGAGGACTTCCCAAGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * ** * * *
32022583 ACACTTAACTGC-GAAGTTCTGATTGGATCTAGTGC-TTAAGTGTTGGTATGATTGCACCCATCA
192 ACGCTTAACTGCAG-AGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCA
* * *
32022646 ACTCTTGCGCAATCTATTTATATAAACGCAGCCCCTTATCGCACTTGT
255 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * ** * * * *
32022694 GACTCGAATTTGATTATAAACTCGACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACGTAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * *** * *
32022759 TAACTAATTAGTTATACGATGTTTAGAAAATGCAACTAAATTTTTTTTCTACGAAATAAAATGGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
* * * * * ** *** *
32022824 AAGGGTGAAAGACGATGACTTCCCAAGAGGTCATCCATCCTAGTACTACTCTTTCTTTAGCGCGC
131 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * ** *
32022889 TTAACTGCAGAGTTCTGATGTGATCCGGTGCATTAGTGCTGATATGATTTCACCCGTCAAGTCTT
196 TTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
* * *
32022954 GCGCAATCTCTTTATATAAAGGGTTCCCCTTATCGCACTTGC
261 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * *
32022996 ACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTCA-TTATTTCGCAAAATGCAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAA-TGATTTATTTCGCAAAACGCAA
* * * * ** *
32023060 ATAAGTAATTAGTTACACGATGTTTTGAAAATACAACTAAAAAACATTTATATGAAATAAAATAG
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGG
* * * * * *
32023125 GAGAGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACTATTCACTCCCAAGCACA
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* ** * * * *
32023190 CTTAATTGTGGAGTTCTGAT-GGATTCGGTG-ATTAAGTGCTGGTATGGTCGCTCCCTTCAACTC
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTC
* ** * *
32023253 TTGTGTTATCTATTTTTATAAAGGCTTCCCCTTATCGCACTTGC
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * * *
32023297 GCCTCGAATTTGACTTCAAATTCGACCAAAAAACATTTTAAATGATTTATTTCACAAAACGCAGA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* ** *
32023362 TAACTAATTAGTTACACGATGTTTAGAAAATGCATCTAAAAATTGTTTTTCTATGAAATAAAATG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAA-AATTTTTATATGAAATAAAATG
* * * * * * *
32023427 GGAGGAGTGCAACATGAGGACTTCCAAAGAAGTCGCCCATCCTAGTACGACTCTCGTCCATGAG-
129 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA--AGC
* * *
32023491 A-GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCAG-ACCCGTTAA
192 ACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC-GCACCCGTCAA
* * * * *
32023554 CACTTGCGGAATCTATTTATATAAAGGTTGCCCTTTATCGCGCTTG-
256 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * * * *
32023600 GACCTCGAATTAT-ATTCCGAATTTGACCCAATAACATTTCAAAAGA-TTACTTTCGCAAAATGC
1 G-CCTCGAATT-TGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTA-TTTCGCAAAACGC
* * ** *
32023663 AAATAACTAATCT-GTTACAAGATGTTTAGAAAATGTAACAAAACAAAAGTTTATAAGAAAT-AA
63 AAATAACTAAT-TAGTTACACGATGTTTAGAAAATGCAACAAAA-AAATTTTTATATGAAATAAA
* * *
32023726 ATCGGGAGTGGATG-AACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCGCA
126 AT-GGGAG-GGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * * * * * * * * ** *
32023790 AGCACTCTTAACAGCAGAGTTCTAATGGAATCCGATGAATTAATGCTAGTTTGATTGCAGTCATC
189 AGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * *
32023855 AACTGTTGCGTAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTCC
254 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* *
32023904 GCCTCGAATTTGAATGCAAATTCGACCAAATAAAGTTTCAAATAATTTATGTT-GCAAAACGCAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTAT-TTCGCAAAACGCAA
* * ** * * * *
32023968 ATAACAAATTAGTTACACCACT-TGGAGAATATGAAACTAAAAAAATATTTATATGAAATAAATT
65 ATAACTAATTAGTTACACGA-TGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAAT
* * * * * * *
32024032 TGGTGGGGTTCAACACGAGGACTTCCTAAAAGGTCACTCATCCTAGTACTACTCTCGCCTAAGCA
128 GGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * * *
32024097 CGCTTAACTGCGGAGTTCTGATGGGATTCGATGCATTAATGCTGATATGATCGCACCGGTCAACT
193 CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* *
32024162 CTTGCGCAATATATTTATATAAAGGCTGCCACTTAAT-GCACTTGC
258 CTTGCGCAATCTATTTATATAAAGGCTGCCCCTT-ATCGCACTTGC
* * * * *
32024207 GCCTCGAATCTGAATGCAACTTCGACTAAATAATGTTTCAAATGATTTATTTCGCAGAACGCAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* *
32024272 TAACTAATTAGTTACACGATTTTTAGAAAATGCAACTACAAAAA--TTTATATGAAATAAAATGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATGG
* *
32024335 GAGGGGTGCAACACGAAGACTTCCCAAGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGCACG
130 GAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
** * * * * *
32024400 CTTTGCTGCGGAGTTCTAATGGGATCCGGTACATTAGTGCTGGTATGATCGCACCCTTAAACTCT
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* ** * *
32024465 TGCGCAATGTATTTACGTAAACGCTGCCCCTCATCGCACTTGC
260 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * * * *
32024508 GCCTTGAATTTGAATGCAAATTCAAGCAAATAACGTTTCAAATAATTTAATTCGCAAAACGGAAA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
* * * * ** * *
32024573 TAACTAATTAGTTACGCCACGTTGAGAAAATGCAACAAAAAAATAGTTAAATGAAATAAATTGGG
66 TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
* * * *
32024638 AGGGGTGCAACACGAGAACTTCCCATA-AGATCCCCCATCCTAGTACTACTCTCGCCCCAGCACG
131 AGGGGTGCAACACGAGGACTTCCCA-AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * ** * **
32024702 TTTAACTACAGAGTTCTGATGGGCTCCGGTGCATTAGTGCCAGTATGATAGCACGAGTCAA-TAC
195 CTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT-C
* *
32024766 TTGCACAATCTATTTATATAAAGGCTGCCCCTAATCGCACTTGC
259 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * * *
32024810 GCATCGAATTTGAATACAAATTCGGCCAAATAACGTTTCAAATGATTTATTTCG-AAGAACGCCA
1 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAA-AACGCAA
* * * * *
32024874 ATAACTAATTAGTTAAATGATATTTAGAAAATCCAACTAAAAAAA---AT-TATGAAATAAAATG
65 ATAACTAATTAGTTACACGATGTTTAGAAAATGCAAC-AAAAAAATTTTTATATGAAATAAAATG
* * * * *
32024935 GAAGGGGTGCAACATGATGACTTCCCAAGAGGTCACCCATCCTAGTACTATTCTCGCCCAAGCAA
129 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
32025000 GCTTAACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACACGTCAACTC
194 GCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
32025065 TTGCGC
259 TTGCGC
32025071 CTCGAATTTG
Statistics
Matches: 5879, Mismatches: 1140, Indels: 324
0.80 0.16 0.04
Matches are distributed among these distances:
282 2 0.00
283 151 0.03
284 1 0.00
285 15 0.00
286 57 0.01
288 2 0.00
291 1 0.00
292 1 0.00
293 7 0.00
294 88 0.01
295 57 0.01
296 82 0.01
297 5 0.00
298 77 0.01
299 303 0.05
300 663 0.11
301 1177 0.20
302 1247 0.21
303 1148 0.20
304 783 0.13
305 12 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (302 bp):
GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGCAAA
TAACTAATTAGTTACACGATGTTTAGAAAATGCAACAAAAAAATTTTTATATGAAATAAAATGGG
AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
TTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
Found at i:32022449 original size:906 final size:905
Alignment explanation
Indices: 32015869--32039715 Score: 22785
Period size: 906 Copynumber: 26.4 Consensus size: 905
32015859 TTGCACCTCG
** *
32015869 AATTAGTTACATGATGTTTAGAAAATGCAACT-AAAAAAAA-TTATATG--AT--AATGGGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * *
32015928 GTGCAGCACTAGGACTTCCCAAGGAGGTCACCCATCCTAGTACTACTCTCGCTCAAGCATGCTTA
66 GTGCAACACGAGGACTTCCCAA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * * * * **
32015993 GCTGCGAAGTTCTGATGGGATCCGATGCATTAGTGCTAGTAAGATCGCAACTATCAACTCTTGCG
130 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *
32016058 CAATCTATTTATGTAAAGGCTGCCCCTTATCGTACTTGCGCCTCGAATTTGAATAG-AAATTTGA
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAT-GCAAATTCGA
** ** * * * *
32016122 CCAAATAACGTTTCAAAAGATTTACCTCGCAGAAC-AAAATAACTAATTAGTTACACGATGTTTA
259 CCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTA
** * *
32016186 GAAAATGCAAC-AAAAAATTTTTTTTTGTTCTGAAATAAAATGGGAGGGGTGCAACACGAGGACT
324 GAAAATGCAACTAAAAAA----AATTT-ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACT
** ** *
32016250 TCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTAGAGTTCCAACG
384 TCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* ** *
32016315 GGATCTGGTGCATTAGTGCTAATATGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAA
449 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAA
* * * * * *
32016380 GGCTACCCCTTATCGAATTTGCGCCTCGAATTTGAATGAAAATTCGACCAAATAACCTTTCGAAT
514 GGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAAT
* * * * * * *
32016445 GATTTATTTCGCCAAATGCAAATAAGTAATTAGTTACACGAAGTTTAGAAAATGCAACT-AAAAA
579 TATTTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAA
* * *
32016509 AATTGTATCAAAT-AAATCGGGAGGGGTGCAACACGAGGAGTTTCCAG-GAGGTCACCCATCCTA
644 AATTATATGAAATAAAAT--GGAGGGGTGCAACACGAGGA-CTTCCAGAGAGGTCACCCATCCTA
* ** * * * *
32016572 GTAGTACTCTCGCCCAAGCAATCTTAACTGCGGAGTTCTGATAGGG-TCCGGTGAATTAGTCCTC
706 GTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGAT-GGGATCCGGTGCATTAGTGCTG
* * * * **
32016636 GTTTGATCACACCTGTAAACTCAGGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTG
770 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTG
* * * ** *
32016701 CGCCTCAAATTT-AATTGCGAATTCGACCAAATAACGTTTCAAATGATTTCCTTCGCAAAACACA
835 CGCCTCGAATTTGAA-TGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCA
*
32016765 AATAAGT
899 AATAACT
** *
32016772 AATTA-TATACACGGTGTTTAGAAAATGCAACT-AAAAAAAATTTATATGAAATAAAATGGGA-G
1 AATTAGT-TACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGG
* ** * * * * **
32016834 GATGCAACACGAGGACTTCCCGGGAGGTCACACATCCTTGTACTACCCTCACCCAAGCTTGCTTA
65 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
** * ** *
32016899 ACTGTAGAGTTCTAATGGGATCCGGTGCATTAGTGCCAGTATGATCGCATCCGTCAACTCTTGCG
130 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * * * * *
32016964 CAATCTATTTACATAAAGGTTGCCCCTTATCGCACTTGCGCCTCAAAATTGATTGCAAATTTGAT
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* * * * **
32017029 CAAATAACGTTTCAAATGATTTGTTTCGCAAAAGGCAAAT-AGCTAATTATTTACATGATGTTTA
260 CAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAG-TAATTAGTTACACCATGTTTA
* *
32017093 GAAAATGCAACT-AAAAAAATTTATATGAAATAAAATGGGAGAGGTGCAACAC-ATGGACATCCC
324 GAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGA-GGACTTCCC
* * * * *
32017156 AGGAGGTCACCCATTCTAGTACAACTCTCGCCCAGGCACGCTTTA-TAGCGGAGTTCTGATGGGA
388 AAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT-GCGGAGTTCTGATGGGA
* * * * *
32017220 TCCAGTGCATTAGTGCTTGTATGATCGCACCCGTCAACTTTTGCGCAATCAATTTATATAAAAGC
452 TCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * * * * *
32017285 TGCCCCATATTGTACTTG-ACCTCGAATTTGAATGCAAGTTCGACCAAATAACGTTTCAAATGAT
517 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* * * * * * *
32017349 TTATTTCGCAAAACGTAAATAGCTAATTACTTATACGATGTTTAGAAAATGCAACTAAAAAAAAT
582 TTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAA-
*
32017414 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA-AGCGGTCACCCATCCTAGTA
646 TTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAGTA
*** * *
32017478 C-AGCTCTTATCCAAGCACGCTTACCTG-AGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGT
709 CTA-CTCTCGCCCAAGCACGCTTAACTGCA-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGT
* ** * * * *** * *
32017541 ATGACCGCACTTGTCAACTATT--GC-A-C-----ATGT---GCCT-CAAATT-T-GCACATGTG
772 ATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCG
* * * * *
32017591 CCTCGAATTTGATTGCAAATTTGACCAAATAACGTTTCAAATGATTTGTTTCGCCAAAA-GAAAA
837 CCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCG-CAAAACGCAAA
32017655 TAACT
901 TAACT
* * * * *
32017660 AATTAGTTACACGATGTTTAGAAAATACAACT--AAAAAAATGTATATGAAATAAAATAGGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * * * *
32017723 GTGCAACAAGAGGACGTCACAGGAGGTCACCCATCCTAGTAGTACTCTCCCCCAAGCACTCTTAA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * ** * *
32017788 CTGCGGAGTTCTGATGGGGTCCAGTGAATTAGTGATGGTATGATCGCACCTATAAACTCGTGCGC
131 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * *
32017853 AATCTATTTATATAAAGGCTACCCTTTATCGCACTTGCGCCTCGAATTTGATTGCAAATTCAACC
196 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * **
32017918 AAATAACGTTTCAAATGATTTCCTTT-GTAAAACGCAAATAAGTAATTA-TATACACGGTGTTTA
261 AAATAACGTTTCAAATTATTT-ATTTCGCAAAACGCAAATAAGTAATTAGT-TACACCATGTTTA
* * * *
32017981 GAAAATGCAACT-AAAAAAATTTATATGAAATAAAATGGGA-GGATACAGCACGAGGACTTCCTA
324 GAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * * * ** *
32018044 GGAGGTCACCCATCCTAATACTACCCTCACTCAAGCTCGCTTAATTGTAGAGTGT-TAATGGGAT
389 AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGT-TCTGATGGGAT
* * * * * *
32018108 CCGCTGCATTAGTGCTAGTATGATCGCATCCGTCAGCTCTGGCACAA-CTATTTATATAAAGGCT
453 CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* * * *
32018172 GCCTCTTATCACACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATT
518 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* ** * * * * * *** * * *
32018237 TGTTTAACAAAAAGCAAATTATTAATCAGTTGCACGTTGTTTAGAAAATACAACTAAAAAAATTT
583 TATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAATT
* *
32018302 ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACATCCCAG-GAGGTCAACCATCCTAGTACT
648 ATATGAAATAAAAT-GGAGGGGTGCAACACGAGGAC-TTCCAGAGAGGTCACCCATCCTAGTACT
* * * * * *
32018366 ACTTTCGCCCAAGCATGCTTTACAGCAGAGTTCTGATGGGACCCAGTGCATTAGTGCTGGTATGA
711 ACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA
* * * * * * * *
32018431 TCACACCCGTAAACTTTTCCGCAATCAATTTATATAGAA-GCTACCCCATATCGTACTTGCGCCT
776 TCGCACCCGTCAACTCTTGCGCAATCTATTTATATA-AAGGCTGCCCCTTATCGCACTTGCGCCT
* * * * * *
32018495 CGAATTTGAATGCAAATTCGACCAAATAA-GTTTAAAATGATTTATTTCACAAAATGAAAATACC
840 CGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
32018559 T
905 T
* * * * *****
32018560 AATTATTTACACGATGTTTAGAAAAGGCAACT-AAATTTTTTTTATATGAAATAAAATGGGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * * *
32018624 GTGCAACATGAAGACTTCCTAGGAGGTCACCCATCCTACTACTACTCTCACCCAAGCACGCTT-A
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * ** *
32018688 CCGAAGGAGTTTTGATGGGATCTAGTGCATTA-TAGCTGGTATGATCGCACCTGTCAACT-TGTG
131 CTG-CGGAGTTCTGATGGGATCCGGTGCATTAGT-GCTGGTATGATCGCACCCGTCAACTCT-TG
* *
32018751 CGCAATCTATTTATATAAAGGCTG-CCCTTATCGCACTTGCGCCTCGAATTTGATTACAAATTCG
193 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
* * * * * * *
32018815 ACCAAATAACGTTGCAAGTGATTTGTTTCGCTAAAA-GTAAATAACTAATTAGTTACACGATGTT
258 ACCAAATAACGTTTCAAATTATTTATTTCGC-AAAACGCAAATAAGTAATTAGTTACACCATGTT
** * * *
32018879 TAGAAAAT---A-T-AAAAAAAGGTATATGAAATAAAATGTGAGGGGTGCAACATGAGGACATCC
322 TAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * * * *
32018939 CAGGAGGTCATCCATCCTAGTAGTACTCTTGCCCAATCACTCTTAACTGTGGAGTTCTGA-GGGG
387 CAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* * * * * ** * * *
32019003 TCCAGTGAATTAG-GTTGGTATGATCGCACCTGTAAACTCGAGCGTAATCGATTTAAATAAAGGC
452 TCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * * * * * * * * *
32019067 TTCCCTTTATCGTACTTGCACCTCAAATTTGATTGTAAATTTGACCAAA-AACATTTCAAATGAT
517 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* * **** *
32019131 TTCCTTT-GCAAAACACAAATAAGC-AATTA-TATACACGGTATTTAGAAAATGCAACTAAAAAA
582 TT-ATTTCGCAAAACGCAAATAA-CTAATTAGT-TACACCACGTGTAGAAAATGCAACTAAAAAA
* * * * *
32019193 AATTTATATGAAATAAAATGG-GAGGATGTAGCACGAGGACTTCCCAG-GAGATCACCCAACCTA
644 AA-TTATATGAAATAAAATGGAG-GGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTA
** ** * * * * * * *
32019256 GTACTAC-CTTTACTAAAGCTCGCTTAACTGTAGAGTGCTAATGGGACCCGGTGCTTTAGTGCTA
706 GTACTACTC-TCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTG
* * * *
32019320 GTATGATCGCATCCGTCAACTCTAGCGCAATCTATTTATATAAATGCTGCCCCTTATTGCACTTG
770 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTG
* * * * * *
32019385 TGCCTCGAATTTGAATGTAAATTCGACCAAATAATGTTTCAAATGATTTGTTTCGCAAAAAGCAA
835 CGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAA
*
32019450 AAAACT
900 ATAACT
* * * * *
32019456 AATTAGTTACACGATGTTTAGAAAATACAGCT-AAAAAAAA-TTATATGAAATAAAATGGGAGGA
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * *
32019519 GTGCAACACGAGGA-TATCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAGGCACACTTT
66 GTGCAACACGAGGACT-TCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * * * * *
32019583 ACAGCGGTGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATTATCGCACCCGTAAACTTTTGCA
130 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * *
32019648 CAAACAATTTATATAAAGGCTGCCCCTTATCGTACTTGTGCCTCGAATTTGAATGCAAATTCGAC
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* * * ** * * *
32019713 CAAATAATGTTTCAAATGATTTACTTCGCAAAACAAAAATAACTAATTAGTTCCACGATGTTTAG
260 CAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTAG
* * *
32019778 AAAATACAAC-AAAAAGAATTTTTTTATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
325 AAAATGCAACTAAAAA-AA-ATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* * * ** * * * *
32019842 AGGAGGTCACCCATCCTAGTCCTACTTTTACCCAAGCACGCTTAGCTTCAGAGTTCTGACGGGAT
388 AAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * * * * *
32019907 TCGGTGCATTAGTGCTAGTATGGTCGCACTCGTCAACTCTT-CTGTAATCTATATATATAAAGGC
453 CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC-GCAATCTATTTATATAAAGGC
* * * * * *
32019971 TACCCCTTATCGCACTTGCACCTCGAATTTGATTGCAAATTCGACCAAATAACATTTGAAATGAT
517 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* * * * *
32020036 TTCTTTC-CAAAAACGCAAATAACTAATTAGTTACACGATGTTTAGAAAATGCAATTAAAAATTG
582 TTATTTCGC-AAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAA---
*** * ** * * * **
32020100 TTTTTTTACAAAATAAAATGGGAGGGGTGCAACACGAGGACTTTCTA-ACAAGTTGCCCATCCTA
643 AAATTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGAC-TTCCAGAGAGGTCACCCATCCTA
** * * * *
32020164 GTACGGCTCTCGCCCATA--AGCGCTTAACTGCGGAGTTCTGATGGGATCTGGCGCATTAGTGCG
706 GTACTACTCTCGCCCA-AGCA-CGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCT
* * * *
32020227 GGTACGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCTCGTTATCGCACTT
769 GGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTT
* * * *
32020292 GCGCCTCGAATTTGAATGTAAATTCGACCAAATAACGTTTCAAATTCTTTATTTCGAAAAACGCG
834 GCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCA
*
32020357 AATAAGT
899 AATAACT
* * * *
32020364 AATTACTTACACAATGTTTGGAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATGGGAGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAA-AAATTTATATGAAATAAAATGGGAGG
* * * ** *
32020429 GGTGCAACACGTGGACTTCCCAA-AGGGTCACCCAACCTAGTACTGCTCTTTCCCAAGCAAGCTT
65 GGTGCAACACGAGGACTTCCCAAGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * ** * * *
32020493 AATTGCGGAGTTTTGATTGGATCTAGTGC-TTAAGTGCGGGTATGATCGCACCCATCAACTATTG
129 AACTGCGGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTG
* * * *
32020557 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGTACTTGCGCCTCAAATTTGACTGGAAATTCG
193 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
* * * * * **
32020622 ACCAAAGAACGTTTCAAATGATTTCTTTCGCAAAACACAAATAACTAATTAGTTACATGATGTTT
258 ACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTT
**** * * *
32020687 AGAAAATGCAACTAAAATTTTTTTCTACGAAATAAAATGGGAGGGGTGCAAGACGAGGACTTCCC
323 AGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* * * * * * *
32020752 AAGAGGTCACCCACCCAAATACTACTCTC-TCCAGAGCACGCTTAACTGCAGAGTTCTAATAGGA
388 AAGAGGTCACCCATCCTAGTACTACTCTCGCCCA-AGCACGCTTAACTGCGGAGTTCTGATGGGA
* * * * * * *
32020816 TCCGGTGCATTATTGCTGGTATGATCGCTCTCGTCAACTCTTTCACAATCTATTAATATAAAGGT
452 TCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * * * * *
32020881 TGCCCCTTATCGTACATGTGCCTCGAATTTGAATACAAATTCGACCATATAATGTTTCAAATTAT
517 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTAT
* * * * * * *
32020946 TTATTTCGGAAAACACAAATAAGTAATTAGTTACACGATGTTTGGAAAATGCAACTAAAAAAAAT
582 TTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAAT
* * * *
32021011 TATATGAAATAAAATGAGAGAGGTGCAACATGAGGACTTCCTA-AGGGGTCACCCATCTTAGTAC
647 TATATGAAATAAAATG-GAGGGGTGCAACACGAGGACTTCC-AGAGAGGTCACCCATCCTAGTAC
* * * *
32021075 TACTCACTCCCAACCACGCTTAACTGC---G----G-T--G---C--T---TAAGTGCTGGTATG
710 TACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG
* * ** * * * **
32021122 GTCGCACCCGTCAACTATTGCATAATCTATTTAAATAATGGATGCCCCTTATCGCACTTATGCCT
775 ATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCT
* * * * *
32021187 CCACTTT-AATTGCAAATTCGACCAAATAATC-TTTCAAATGATTTGTTTCGCAGAACGCAAATA
840 CGAATTTGAA-TGCAAATTCGACCAAATAA-CGTTTCAAATTATTTATTTCGCAAAACGCAAATA
32021250 ACT
903 ACT
* * **** * * *
32021253 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTTCTACGAAATAAAACGGGAGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAA-AAAATTTATATGAAATAAAATGGGAGG
* *** * * * *
32021318 GGTGCAACATGAGGACTTCCCAAGAAACCGCCTATCCTAGTACGATTCTCG-CCAAG-AGCGCTT
65 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-CGCTT
* * * * * * * *
32021381 AACTGCGGAGTTTTGTTGAGATCTGATGCATTAGTGGTGGTATGATCGCACCAGTAAACTCTTGC
129 AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * *
32021446 GCAATAT-TTTATATAAAGGCTGCCCCTTATTGCACATGCGCCTCGAATTTGAATGCAAATTCGA
194 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
** * ** *
32021510 CCAAATAACGTTTCAAATTATTTATTTCGCAAAACAAAAATAAGTAATTACTTACACGGTGTTCA
259 CCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTA
* *
32021575 GAAAATGCAACTAAAAAACAAATTTATATGAAATAAAATGGAAGAGGTGCAACACGAGGACTTCC
324 GAAAATGCAACT-AAAAA-AAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * * *
32021640 CAAGAGGTTACCCATTCTAGTACTACTCACCCCCAAGCACGCTTAGCTGCAGAGTTCTGATTGGA
387 CAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
*** * * *
32021705 TTTAGTGC-TTAAGTGCTGGTACGATCGCACCCATGAACTCTTGCGCAATCTATTTATATAAAGG
452 TCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* * * * *
32021769 CTGCCCCTTATCCCACTTGCGCCTCGAATTTGATTGGAAATTCG-CCAAAATAACGTTTCAAGTG
516 CTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC-AAATAACGTTTCAAATT
* * * **
32021833 ATTTCTTTCGCAAAACGCAAATAACTAATTAGTTACACGATGCT-TAGAAAATGCAACTAAAATT
580 ATTTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACG-TGTAGAAAATGCAACTAAAAAA
** * * * * *
32021897 TTTTTTCCACGAAATAAAATGG-GGGGTTCAAGACGAGGACTT-CAGATAGGTCACCCATCCTAG
644 AATTAT--ATGAAATAAAATGGAGGGGTGCAACACGAGGACTTCCAGAGAGGTCACCCATCCTAG
* * * * * *
32021960 TACTACTCTCTCCCGAGCATGCTTAACTTCAGAGTTTTGATGGGATCCGGTGCATTAGTGCTGAT
707 TACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGT
* * * * * * * * **
32022025 ATCATCGCACCTGTCAAGTGTTGCGCAGTCTCTTTATATAAAGGCTACCCCTTATCGTACTTATG
772 ATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCG
* * * * * * *
32022090 CCTCGAATTTGATTGCAAATTCGACAAAATAACATTTGAAATGATTTCTTTCGCAAAACACAAAT
837 CCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAAT
32022155 AACT
902 AACT
* * **** * ** *
32022159 AATTAGTTACACGATGTTTAGAAAATGCAACTAAAAATTGTTTTCTACAAAATAAAATGAGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * * * *
32022224 GTGCAACACGAGGACTTTCTAAGAAGTCGCCCATCCTAGTACGACTATCGCCCATG-AGCGCTTA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-CGCTTA
* *
32022288 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCGGGTATGATCGCACCCGTCAACTCTTGTG
130 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *
32022353 CAATCTATTTATATAAAGGCT-ACCCTTATAGCACTTGCGCCTCGAATTTGAATGCAGATTCGAC
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* * *
32022417 CAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTACTTACACGATGTTTGG
260 CAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTAG
* * *
32022482 AAAATGCAACTAAAAAACAAATTTTTATGAAATAAAATGGG-GGGGTGTAACACGTGGACTTCCC
325 AAAATGCAACT-AAAAA-AAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* * * * *
32022546 AA-AGGGTCACCCATCCTAGTACTGCTCTCTCCCAAGCACACTTAACTGCGAAGTTCTGATTGGA
388 AAGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
** * * * *
32022610 TCTAGTGC-TTAAGTGTTGGTATGATTGCACCCATCAACTCTTGCGCAATCTATTTATATAAACG
452 TCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* * * * ** * * *
32022674 CAGCCCCTTATCGCACTTGTGACTCGAATTTGATTATAAACTCGACCAAAGAACGTTTCAAATGA
516 CTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTA
* * * * * * ****
32022739 TTTCTTTCGCAAAACGTAAATAACTAATTAGTTATACGATGTTTAGAAAATGCAACTAAATTTTT
581 TTTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAA-AAAA
* * * * * * * *
32022804 TTTCTACGAAATAAAATGGGAAGGGTGAAAGACGATGACTTCCCA-AGAGGTCATCCATCCTAGT
645 ATTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAGT
** *** * * *
32022868 ACTACTCTTTCTTTAGCGCGCTTAACTGCAGAGTTCTGATGTGATCCGGTGCATTAGTGCTGATA
708 ACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTA
** * * * * *
32022933 TGATTTCACCCGTCAAGTCTTGCGCAATCTCTTTATATAAAGGGTTCCCCTTATCGCACTTGCAC
773 TGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGC
*
32022998 CTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTCA-TTATTTCGCAAAATGCAAAT
838 CTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATT-ATTTATTTCGCAAAACGCAAAT
*
32023062 AAGT
902 AACT
* * * * * * *
32023066 AATTAGTTACACGATGTTTTGAAAATACAACT-AAAAAACATTTATATGAAATAAAATAGGAGAG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * *
32023130 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCGTAGTACTATTCACTCCCAAGCACACTTAA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * * *
32023195 TTGTGGAGTTCTGAT-GGATTCGGTG-ATTAAGTGCTGGTATGGTCGCTCCCTTCAACTCTTGTG
131 CTGCGGAGTTCTGATGGGATCCGGTGCATT-AGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
** * * * *
32023258 TTATCTATTTTTATAAAGGCTTCCCCTTATCGCACTTGCGCCTCGAATTTGACTTCAAATTCGAC
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* * * * * * * *
32023323 CAAAAAACATTTTAAATGATTTATTTCACAAAACGCAGATAACTAATTAGTTACACGATGTTTAG
260 CAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTAG
* *** * * * *
32023388 AAAATGCATCTAAAAATTGTTTTTCTATGAAATAAAATGGGAGGAGTGCAACATGAGGACTTCCA
325 AAAATGCAACTAAAAA--AAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* * * *
32023453 AAGAAGTCGCCCATCCTAGTACGACTCTCGTCCATGAG-A-GCTTAACTGCGGAGTTCTGATGGG
388 AAGAGGTCACCCATCCTAGTACTACTCTCGCCCA--AGCACGCTTAACTGCGGAGTTCTGATGGG
* * * *
32023516 ATCCGGTGCATTAGTACTGGTATGATCAG-ACCCGTTAACACTTGCGGAATCTATTTATATAAAG
451 ATCCGGTGCATTAGTGCTGGTATGATC-GCACCCGTCAACTCTTGCGCAATCTATTTATATAAAG
* * * * * * * * *
32023580 GTTGCCCTTTATCGCGCTTG-GACCTCGAATTAT-ATTCCGAATTTGACCCAATAACATTTCAAA
515 GCTGCCCCTTATCGCACTTGCG-CCTCGAATT-TGAATGCAAATTCGACCAAATAACGTTTCAAA
** * ** * * *
32023643 AGA-TTACTTTCGCAAAATGCAAATAACTAATCT-GTTACAAGATGTTTAGAAAATGTAAC-AAA
578 TTATTTA-TTTCGCAAAACGCAAATAACTAAT-TAGTTACACCACGTGTAGAAAATGCAACTAAA
* *
32023705 ACAAAAGTTTATAAGAAAT-AAATCGGGAGTGGATG-AACACGAGGACTTCCCAG-GAGGTCACC
641 A-AAAA--TTATATGAAATAAAAT--GGAG-GGGTGCAACACGAGGACTT-CCAGAGAGGTCACC
* * * * * * *
32023767 CATCCTAGTACTACTCTCGCGCAAGCACTCTTAACAGCAGAGTTCTAATGGAATCCGATGAATTA
699 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTA
* * * * ** * * *
32023832 ATGCTAGTTTGATTGCAGTCATCAACTGTTGCGTAATCTATTTATATAAAGGCTGCCCCTTATCG
764 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCG
* * *
32023897 CACTTCCGCCTCGAATTTGAATGCAAATTCGACCAAATAAAGTTTCAAATAATTTATGTT-GCAA
829 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTAT-TTCGCAA
*
32023961 AACGCAAATAACA
893 AACGCAAATAACT
* * * * * * *
32023974 AATTAGTTACACCACT-TGGAGAATATGAAACTAAAAAAATATTTATATGAAATAAATTTGGTGG
1 AATTAGTTACACCA-TGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGG
* * * * *
32024038 GGTTCAACACGAGGACTTCCTAAAAGGTCACTCATCCTAGTACTACTCTCGCCTAAGCACGCTTA
65 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * * *
32024103 ACTGCGGAGTTCTGATGGGATTCGATGCATTAATGCTGATATGATCGCACCGGTCAACTCTTGCG
130 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * * *
32024168 CAATATATTTATATAAAGGCTGCCACTTAAT-GCACTTGCGCCTCGAATCTGAATGCAACTTCGA
195 CAATCTATTTATATAAAGGCTGCCCCTT-ATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * * * * * *
32024232 CTAAATAATGTTTCAAATGATTTATTTCGCAGAACGCAAATAACTAATTAGTTACACGATTTTTA
259 CCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTA
* *
32024297 GAAAATGCAACT-ACAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAAGACTTCCCA
324 GAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* ** *
32024361 AGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTTGCTGCGGAGTTCTAATGGGATC
389 AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * * * ** *
32024426 CGGTACATTAGTGCTGGTATGATCGCACCCTTAAACTCTTGCGCAATGTATTTACGTAAACGCTG
454 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
* * * * *
32024491 CCCCTCATCGCACTTGCGCCTTGAATTTGAATGCAAATTCAAGCAAATAACGTTTCAAATAATTT
519 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTT
* * *
32024556 AATTCGCAAAACGGAAATAACTAATTAGTTACGCCACGT-TGAGAAAATGCAAC-AAAAAAATAG
584 ATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGT-AGAAAATGCAACTAAAAAAA-A-
* * * * * *
32024619 TTAAATGAAATAAATTGGGAGGGGTGCAACACGAGAACTTCCCATA-AGATCCCCCATCCTAGTA
646 TTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAGTA
* * * * **
32024683 CTACTCTCGCCCCAGCACGTTTAACTACAGAGTTCTGATGGGCTCCGGTGCATTAGTGCCAGTAT
709 CTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTAT
* ** * *
32024748 GATAGCACGAGTCAA-TACTTGCACAATCTATTTATATAAAGGCTGCCCCTAATCGCACTTGCGC
774 GATCGCACCCGTCAACT-CTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGC
* * * * *
32024812 ATCGAATTTGAATACAAATTCGGCCAAATAACGTTTCAAATGATTTATTTCG-AAGAACGCCAAT
838 CTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAA-AACGCAAAT
32024876 AACT
902 AACT
* ** * * * *
32024880 AATTAGTTAAATGATATTTAGAAAATCCAACT-AAAAAAAA--T-TATGAAATAAAATGGAAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * *
32024941 GTGCAACATGATGACTTCCCAAGAGGTCACCCATCCTAGTACTATTCTCGCCCAAGCAAGCTTAA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * *
32025006 CTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCA-----C-A------CG-
131 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
*
32025058 --TC----------AA--------C---T----CTTGCGCCTCGAATTTGAATACAAATTCGACC
196 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * **
32025096 AAATAACGTTTCAAATGATTTATTTCGCAAAACGGAAATAACTAATTAGTTAAAAAATGTTTAGA
261 AAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTAGA
* **
32025161 AAATGCAACT-AAAAAAA-TTATATTAAATAAAATATAAGAGGGGTGCAACACGAGGA-----C-
326 AAATGCAACTAAAAAAAATTTATATGAAAT-AAA-ATGGGAGGGGTGCAACACGAGGACTTCCCA
** * *** * * * *
32025218 ----GTCA--C-T-GGAGTACGACTCTCATACAAACACGCATAACTGCGGAGTTCAGATGGGATT
389 AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * * * * *
32025275 CGGTGTATTAGTACTGGTATGATCGCACCCATTAATTCTTTCGCAATCTATTTATATAAAGGCTG
454 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
* * *
32025340 TCGCTTATCGCACTTGCGCCAT-GAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATAATT
519 CCCCTTATCGCACTTGCGCC-TCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* **
32025404 TATTTCGCAAAACGCCAAA-AACAAATTAGTT--A-CAC-----G---AT---A-T--TTAAAA-
583 TATTTCGCAAAACG-CAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAAT
* * * * * *
32025450 -A-ATG---CAACA-CGA-GGGTGCAACACGAGGATTTCCCAG-GAGGTGACCTATCCTAGTACT
647 TATATGAAATAAAATGGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAGTACT
* * * * * * *
32025507 ACTCTCACCCAATCACGCTTAGCTGCGGAGTTCTAATGGGATACGGTGCACTAGTGCTGGTATGA
711 ACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA
* * * * * *
32025572 TTGCACGCGTCAACTCTTGCGCAATCTATTAACATAAA-GATCGCCCCTTATCGCACTTGTGCCT
776 TCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT-GCCCCTTATCGCACTTGCGCCT
* * * *
32025636 CAAATTTGAATGCAAATTCGACCAAATAACGTTTTAAATTATTTATTTTG-AAAATCACAAATAA
840 CGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAA-CGCAAATAA
32025700 CT
904 CT
* * * * * *
32025702 AATTAATTACACCACGTTTAGAAAATGCAACT-AAAAAAACTTTATCTGAAATAAAATGAGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
** ** * * **
32025766 AAGCAACACGAACACTGCCCAGGAGGTCACCCATTGTAG-ACTACTCTCGCCCAAGCACGC-TAG
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA-
* ** * * *
32025829 ACAGTAGAGTTCTGATGGGAACC-G-GCACTCTAGTGCTGGTATGATCGCCCCCGTAAACTCTTG
130 ACTGCGGAGTTCTGATGGGATCCGGTGCA-T-TAGTGCTGGTATGATCGCACCCGTCAACTCTTG
* * *
32025892 CGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCTTCCAATTTGAATGCAAATTCG
193 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
* * * * * * *
32025957 ACCAAATAATGTTTCAAATAATTTATTTTGCAAAACCCAAAATAACTAATTAGTTACACCACGTG
258 ACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGC-AAATAAGTAATTAGTTACACCATGTT
* * * * *
32026022 TAGAAAATACAACTAAAAAAACTTTTTACATGAAATAAAATGGGAGGGGTGAAACACGAAGACTT
322 TAGAAAATGCAACTAAAAAAA--ATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTT
* * * *
32026087 CCC-AGAAGGTCACCCATCCAAGTACTACTTTCGCCTAAGCATGCTTAACTGC--ACGTTTCTGA
385 CCCAAG-AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGA-G-TTCTGA
*
32026149 TGGGATCCGGTGCATTAGTGCTGGTATGATCTCACCCGTCAACTCTTGCGCAATCTATTTATATA
447 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATA
* * * *
32026214 AAGGCTGCCCCTTATCGCACTTACACCTCGAATTTGAATGCAAATTCGACCATATAACGTTTTAA
512 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAA
*
32026279 ATTATTTATTTCGCAGAACGCAAATAAC-ATATTAGTTACACCACGTGTAGAAAATGCAACTAAA
577 ATTATTTATTTCGCAAAACGCAAATAACTA-ATTAGTTACACCACGTGTAGAAAATGCAACTAAA
* * *
32026343 AAAACTTTATATGAAATAAATTGAGAGGGGTGCGACACGAGGA-TATCCCAG-GAGGTCACCCAT
641 AAAA-ATTATATGAAATAAAATG-GAGGGGTGCAACACGAGGACT-T-CCAGAGAGGTCACCCAT
* * * *
32026406 CCTAGTACTACTGTCGCACAAGAACGCTTAACTGCAGAGTTCTGATGGGATACGGTGCATTAGTG
702 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTG
*
32026471 CTGGTATGATTGCA-----C-A------CG---TC----------AA--CT----C-T-T-G--C
767 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCAC
* *
32026500 ---C-CCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTAATTTCGCAAAACG
832 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACG
*
32026561 GAAATAACT
897 CAAATAACT
* * ** * * **
32026570 AAATAGTTAAAAGATGTTTAGAAAATGCAACT--AAAAAAA-TTATATTAAATAAAATATAAGAG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAAT-AAA-ATGGGAG
* * ** * * *
32026632 GGGTGCAACACGAGGGCTTCACTGGA-GT-----A--C--G-AC-ACTCAT---ACAAACACGCA
64 GGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTC-TCGCCCAAGCACGCT
* * * * * * *
32026682 TAACTGCAGAGTTCAGATGGGATCCGGTGTATTAGTGCTGGTATGATCGTACCCATCAATTCTTT
128 TAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTG
* * * *
32026747 CGCAATCTATTTATATAAAGGCTGTCGCTTATCACACTTGCGCCAT-GAATTTGAATGTAAATTC
193 CGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCC-TCGAATTTGAATGCAAATTC
* * ** * *
32026811 GACCAAATATCGTTTCAAATTATTTATTTCGCAAAACACCAAA-AACAAATTAGTTACACGATAT
257 GACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC-GCAAATAAGTAATTAGTTACACCATGT
* ** * * *
32026875 TTAAAAAATGCAACT--AAAATTTTTTTATGAAATAATATGTAGGAGGGGTGCAACACGAGGGCT
321 TTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATG--GGAGGGGTGCAACACGAGGACT
* * *
32026938 TCCCTAA-AGGTCACCCATCCTAGTACTACTCTCGTCCAAGCACGCTTAACTGCAGAGTTTTGAT
384 TCCC-AAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAT
* * * *
32027002 GGGATCAGGTGCATTAGTGCTAGTATGATCGCACCCATCAACTCTTGCGCAATCTAATTT-CATA
448 GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCT-ATTTATATA
* ** * * * * * *
32027066 AAGGCTACCTTTTATCGCCCTTGCGCCTCAAATTTGAATGCAAATTCGACCAAACCATCCTAGTA
512 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAA-TAACGT--TT
* ** * *** ** * ** * * * * * **
32027131 CAACTCTCGCCTAAGCACGCTTAGCTGCGGAGTTTTGA-TGGGATCCGTGGCATTAGAGCTGGTA
574 CAAAT-T--ATTTATTTCGCAAAAC-GC--A--AATAACT--AAT---TAG--TTACACCACG--
* ***** ****** * * **** * **
32027195 TGATCGCCCGCGTCAACTCTTGCGTAATCTAT-TTATAT-AAA-GGCTACCCCT-TATAGCACTT
622 TG-TAGAAAATG-CAACT-AAAAAAAAT-TATATGAAATAAAATGG--AGGGGTGCA-A-CACGA
** ** * ** * * *** * *
32027256 GCG-CTTTGAGTTTGAATGCAAATAACTAAT--TAGTTAC-ACCACGTTGAGAAAATGCA-ACTC
679 G-GACTTCCA----G-A-G-AGGTCACCCATCCTAG-TACTA-CTC-TCG-CCCAA-GCACGCTT
** ** *** * ** * *** * *
32027316 AACAAAATTATATGAAATAAAATGGGA--GGGCTGCAACACGAGGACTTCCCAGGAGTTCACCCA
731 AAC-----TGCA-GAGTTCTGATGGGATCCGG-TGCATTA-G-TG-C-TGGTATGA--T--CGC-
* * ** * * *** * * * *** * *
32027379 ACCTAGTACTACTCTCACCCAAGC-AAGCATA-ACTACGGAGTTCAGATGGGATACGGTGTA-TT
780 ACC-CGT-CAACTCTTGCGCAATCTATTTATATA--AAGG-CTGCCCCT--TAT-C---GCACTT
* * * ** * * * **
32027441 AGTG-CTGGTATGATTGCACCCGTCAACTCTTTCGCAACCTAATTATATAAAGGTTGCCCCTTAT
834 -GCGCCTCGAAT--TTG-A-ATG-CAA---ATTCG--ACC--A--A-AT-AACGTT---TCAAAT
* * *
32027505 CGCACTTGCGCCTCAGATTTGAATGCAAATTCGATCAAATAACATTT
879 --TA-TT-----T---ATTT---CGCAAA-ACG--CAAATAAC---T
* * * * * *
32027552 CGAATGATTTATTTCGCAAAACGCCAATAACTAATTAGTTACACGATGTTTAGAC-AATGCGACT
1 ---A--A-TTAGTT------ACACC-AT--GT--GTAG--A-A-AATG--CA-ACTAA----A--
* * * * * * *
32027616 AAAAAAATTATATAAAATAAAATGGGAGGGGTGCAACATGAGGATTTCCCAGGAGGTGACCTATC
36 AAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATC
* * * *
32027681 CTAGTACTACTCTCAG-CCAAGCACGCTTAGCTGCGGAGTTCTAATGGGATACGGTGCACTAGTG
101 CTAGTACTACTCTC-GCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
* * * * *
32027745 CTGGTATGATTGCACGCGTCAACTCTTGGGCAATCTATTTACATAAA-GATCGCCCCTTATCGCA
165 CTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT-GCCCCTTATCGCA
* * * *
32027809 CTTGTGCCTCAAATTTGAATGCAAATTCGACCAAATAACGTTTTAAATTATTTATTTCGAAAAAC
229 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * * * *
32027874 ACAAATAACTAATTAGTTACACCACGTTTAGAAAATACAACTAAAAAAAACTTTATCTAAAATAA
294 GCAAATAAGTAATTAGTTACACCATGTTTAGAAAATGCAACTAAAAAAAA-TTTATATGAAATAA
* ** ** * * *
32027939 AATGAGAGGGAAGCAACACGAACACTTCCCAGGAGGCCATCCATCCTAG-ACTACTCTCGCCCAA
358 AATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * ** * * *
32028003 GCACGCTTGACAGTAGAGTTCTGATGGGATAC-G-ACACTCTAGTGCTGGTATGATTGCACCCGT
423 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA-T-TAGTGCTGGTATGATCGCACCCGT
* * * *
32028066 AAACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCTTCCAATTTGAAT
486 CAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* * * *
32028131 GCAAATTCGACCAAATAATGTTTCAAATAATTTATTTTGCAAAACCCAAATAACTAATTAGTTAC
551 GCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACTAATTAGTTAC
* * * *
32028196 ACCACGTGTAGAAAATACAACTAAAAAAACTTTTTACATGAAATAAAATGGGAGGGGTGAAACAC
616 ACCACGTGTAGAAAATGCAACTAAAAAAA---ATTATATGAAATAAAAT-GGAGGGGTGCAACAC
* * * * *
32028261 GAAGACTTCCCAGA-AGGTCACCCATCCAAGTACTACTTTCGCCTAAGCATGCTTAACTGCACG-
677 GAGGACTT-CCAGAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCA-GA
*
32028324 TTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTAT
740 GTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTAT
* * * * **
32028389 TTATATAAATGCTG-CCCTTATCGCACTTACGCCTTGAATTTCAATG-AATATTATACCAAATAA
805 TTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAA-ATTCGACCAAATAA
* * *
32028452 CATTTCAAATTATTTATTTCACAAAACACAAATAACT
869 CGTTTCAAATTATTTATTTCGCAAAACGCAAATAACT
* * *
32028489 AATTAGTTACACCACGTGTTGAAAATGCAACTAAAAAAAACTTTATATGAAATAAAAT--G-GGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * **** **** * * * ** *
32028551 GTGCAACACAAGCACCGGTCAACTCTTGC-GCAAT-CT-GTTTATATAAAGCTTGCCCAAGCACG
66 GTGCAACACGAGGACTTCCCAAGAGGT-CACCCATCCTAG--TA-CT-ACTCTCGCCCAAGCACG
* * * * * * *
32028613 GTTAATTACGAAGTTCTGATGAGATCCGGTGCATTAGTGCTGGTCTAATCGCACCCGTCAACTCT
126 CTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * *
32028678 TGCGCAATCTATTTATATAAA-GCTTGCCCCTTATCGCACTTGCGCATCCAATTTGAAGGCAAAT
191 TGCGCAATCTATTTATATAAAGGC-TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAAT
*
32028742 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-TGAATTAGTTACACCAT
255 TCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGT-AATTAGTTACACCAT
** * * * * *
32028806 GTGGAAAAAATACAACTAAAAAAAAACATTATATGAAATATAATGGGAGGGGTGCAACTCGAGGA
319 GTTTAGAAAATGCAACT-AAAAAAAA-TTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
* * * * * * *
32028871 CTTCCCAGGAAGTTACCCATGCTAGTATTACTCTCGCACAGGCACGCTTAACTGCGGAGTTCTGA
382 CTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
* * * * * * *
32028936 TGGGATCCGATGCATTAGTCCTGGTAAGTTCGCACCCGTCAACACTTGGGCAACCTATTTATATA
447 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATA
* * * *
32029001 AAGGCTGCCCCTTATTGCACTAGCGCCTCGAATTTGAATGCAAATTCGACCATATAACGTTTTAA
512 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAA
* * *
32029066 ATTATTTATTTCGCAGAACGCAAATAAC-ATATTAGTTACACCATGTGTAGAATATGCAACTAAA
577 ATTATTTATTTCGCAAAACGCAAATAACTA-ATTAGTTACACCACGTGTAGAAAATGCAACTAAA
* *
32029130 AAAACTTTATATGAAACAAAATGGGAGGGGTGCAACACGAGGACTTCCTAG-GAGGTCACCCATC
641 AAAA-ATTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTTCC-AGAGAGGTCACCCATC
* *
32029194 CTAGTACTACTCTCGCCCAAGCACGCTTATCTGCAGAGTTTTGATGGGATCCGGTGCATTAGTGC
703 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGC
* * *
32029259 AT-TTATGATCGCACCCGTCAACTCTTGCGAAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
768 -TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCAC
* * *
32029323 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTGAAATTATTTATTTTGCAAAACG
832 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACG
* *
32029388 TAAATAACG
897 CAAATAACT
* * * * *
32029397 AATTAGTTACACCACGTGTAGAAAATGTAACT-AAAAAAACTTTATATGAAATAAATTGAGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
** * * * *
32029461 GTGCGGCACGAGGACATCTCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGAACGCTTAA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * *
32029526 CTGTGGAGTTCTGATTGGAACAGGTGCATTAGTAAC-GGTATGATCGCACCCGTCAACTCTTGGG
131 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGT-GCTGGTATGATCGCACCCGTCAACTCTTGCG
* * ** *
32029590 TAATCTATTTATATAAAGGCTGCCCCGTATCAAACGTGCGCCTCGAATTTGAATGCAAATTCGAC
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* * * ** * *
32029655 CAAATATCGGTTGC-AATTATTTATTTCGCAAAACGCAAATAACG-ATTTTTTTACACCACGTGT
260 CAAATAAC-GTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGTTT
* * * * *
32029718 AGAAAATACGACTAAAAAAAACTCTATTTGAAATAAAATGGGAGGTGTGCAACACGAGGACTTCC
323 AGAAAATGCAACTAAAAAAAA-TTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * *
32029783 CAAGAGGTCACCCATCCAAGTATTACTCACGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
387 CAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* * * *
32029848 TCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTACGCAATCTATTCATATAAAGGT
452 TCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * * *
32029913 TGCCTCTTATCGCTCTTGCGCCTCGAATTTGAAT-CAAAATTCGTCCAAATATCGTTTCAAATTA
517 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGC-AAATTCGACCAAATAACGTTTCAAATTA
* * * * * *
32029977 TTTCTTTC-CTAAAACGCAAATAACGAATTAGTAACACCACTTGGAGAAAATGCACCTAAAAAAA
581 TTTATTTCGC-AAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA
* *
32030041 ACTTTATATGAAATAAAACGGGAGGGGTGCAACACGA-GATTTCCCA-AGAGGTCACCCATCCTA
645 A--TTATATGAAATAAAA-TGGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTA
* * * * * *
32030104 GTACTACTCTCACCCTAGCACGCTT-ACTTGCGGCGTTCTGATGGGATCTGGTGCGTTAGTGCTG
706 GTACTACTCTCGCCCAAGCACGCTTAAC-TGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTG
* * *
32030168 GTATGATCGCACCCGTCAACTCTTGCGCAACCTATTTATATAAAGGCTGCCCCTTATGGCACTTA
770 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTG
* * * * * **
32030233 CGCCTCGAATTAGAATGCAAATTCGACCATATAAGGTCTCAACTTATTTATTTCGCAAAATTCAA
835 CGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAA
*
32030298 ATAGC-
900 ATAACT
* * * * *
32030303 ATATTAGTTA-ATCTACGTGTAGAAAATGCTACTAAAAGAAATACTTTATATGAATTAAAATGGG
1 A-ATTAGTTACA-CCATGTGTAGAAAATGCAACTAAAA-AAA-AATTTATATGAAATAAAATGGG
* * * * * *
32030367 AGGGGTGCAACACAAGGACTTCCCAAAAGGTTACCCATCCTAGTACTATTCTCGCCGACGCACGC
62 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * *
32030432 TTGACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCGCACCCATCAACTCTT
127 TTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
* * * **
32030497 GCGCAATCTATGTGTATAAAGGATGCCCCTTATCGTGCTTGCGCCTCGAATTTGAATGCAAATTC
192 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTC
* *
32030562 GACCGTAA-AACGTTTCAAATTATTTATTTCGGAAAACGCAAATAACG-AATTAGTTACACCATG
257 GACC-AAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATG
*** * * * * *
32030625 TGGGGAAAATGCAACTAAAAAAAGTTTATATGAAATAAAATGAGAGTGGTGCAATAAGAGGACTT
320 TTTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTT
* * * *
32030690 CCCAAGAGGTCACCCATCCTAGTTCTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTTTAATAG
385 CCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* * *
32030755 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAGCTCTTGTGGAATCTATTTATATAAAG
450 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAG
* * * * *
32030820 GTTGCCCCTTATCGCCCTTGCGCCTCGAATTTGAATGTAAATTCGATCAAATAACTTTTCAAATT
515 GCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATT
* * * * * * *
32030885 ATTTATTTTGCAAAACACAAACAACGAATTAGTTACACCACGTGGAGAAATTGCAAGTAAAAAAA
580 ATTTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA
* * * *
32030950 ACTTTATATGAAATAAAATGGGAGCGGTGCAACACGTGGACTTCCCAG-GAGGTCACCCGTCGTA
645 A--TTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTA
* * * * * * *
32031014 GTACTACTCTCGCTCAAGCACGCTT-A--GCGGAGTTCTAATGGAATCCGGTGTATTAGTACTAG
706 GTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGG
* *
32031076 TATGATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCTGCCCCTTATGGCACTTGC
771 TATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGC
* * ***
32031141 GCCTCGAATTTGAAT-CAAATTCGACCATATAATGTTTCAAATTATTTATTTCGCAAAATTAAAA
836 GCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAA
32031205 TAAC-
901 TAACT
* * * * * **
32031209 ATATTAGGTA-ATCTTCGTGTAGAAAATGCTACTAAAAGAAATACTTTATATGAGTTAAAATGGG
1 A-ATTAGTTACACCAT-GTGTAGAAAATGCAACTAAAA-AAA-AATTTATATGAAATAAAATGGG
* * * * * *
32031273 AGGGGTGCAACACAAGGACTTCCCAAAAGGTTACCCATCCTAGTACTCCTCTCGCCGAAGCATGC
62 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * *
32031338 TTGACTGCGAAGTTCTGATGGGATCCGGTGCGTTAGTGCTGGTATGATCGCACTCGTCAACTCTT
127 TTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
** * * *
32031403 GCGCAATCTATGGATATAAAGGCTGCCCCTTATCACGCTTGCGCCTCAAATTTGAATGCAAATTC
192 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTC
* *
32031468 GACCATATAACGTTTCAAATTATTTATTTCGGAAAACGCAAATAACG-AATTAGTTACACCATGT
257 GACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGT
** * * *
32031532 GGAGAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGGGAGGGGTACAACAAGAGGACTTC
321 TTAGAAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTC
* * * * *
32031597 CCAAGAGGTCACCCATCCTAGTTCTACTCTCGCCGAAGCACGCTTAACTGCGGAGTTTTAATAGG
386 CCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
*
32031662 ATCCGGTGCATTAGTGCTGGTATGATCGCACCTGTCAACTCTTGCGCAATCTATTTATATAAAGG
451 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* * * * * *
32031727 CTGCCCCTTATCGCCCTTGCGCCTTGAATTTGAATGTAAATTAGACCAAATAGCTTTTCAAATTA
516 CTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTA
* * *
32031792 TTTATTTCGCAAAACGCAAATAACGAATTAGTTACACCACGTGGAGAAAATGCAAGTAAAAAAAA
581 TTTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAA
* * * *
32031857 CTTTATATGAAATAAAATGGGAGCGATGCAACACGTGGACTTCCCAG-GAGGTCACCCATCATAG
646 --TTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAG
* * * * * *
32031921 TACTGCTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGAATTCGGTGTATTAGTACTAGT
707 TACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGT
* * * * *
32031986 ATGATTGCACCCGTCAACTCTTGTGCAATCTATTTATATTAAGGCTGCCCGTTATGGCACTTGCG
772 ATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCG
* * * * **
32032051 CCTCGAATTTGAATGCAAATTTGACCATATAACGTTTCGAATAATTTATTTCGCAAAATTCAAAT
837 CCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAAT
32032116 AAC-
902 AACT
* * * * *
32032119 ATATTAGTTA-ATCTACGTGTAGAAAATGCTACTAAAAGAAATACTTTATATGAATTAAAATGGG
1 A-ATTAGTTACA-CCATGTGTAGAAAATGCAACTAAAA-AAA-AATTTATATGAAATAAAATGGG
* * ** * *
32032183 AGGGGTGCAACACAAGGACTTCCCAAAAGGTTGCCCATCCTAGTACTATTCTCGCCGAAGCACGC
62 AGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * *
32032248 TTGACTACGGAGTTCTGATGGGATCCGGTGCGTTAGTGCTGGTATGATCGCACCCGTCAACTCTT
127 TTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
* * *
32032313 GCGCAATCTATTCATATAAAGGCTGCCTCTTATCGCAGTTGCGCCTCGAATTTGAATGCAAATTC
192 GCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTC
* * * * * *
32032378 GACCAAATATCGTTTCATATTATTTATTTAGCATAACGCAAATAACG-AATGAGTTACACCACGT
257 GACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGT
** *
32032442 GGAGAAAATGCAACT-AAAAAAATATTATATGAAATAAAATTGGAGGGGTGCAACACGAGGACTT
321 TTAGAAAATGCAACTAAAAAAAAT-TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTT
*
32032506 CCCAAAAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA--CTTAAACTGCGGAGTTCTGATG
385 CCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGATG
* ** * * * *
32032569 GGATCCGATGCATTAGTGCAAGTATGATCCCACCCGTCAACTCTTGTGCAAGCTATTCATATAAA
449 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAA
* * * * * * *
32032634 TGTTGCCCCTAATCGCAATTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTGAAAT
514 GGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAAT
* * * * *
32032699 TATTTATTTCGCAAAATGCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAA-TTAAAAA
579 TATTTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAA
32032763 AATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA-AGAGGTCACCCATCCTAG
644 AATTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAG
* * * *
32032827 TACAACTCTCGCCCAAGCATGCTTAACTG-AGGAGTTCTAACGGGATCCGGTGCATTAGTGCTGG
707 TACTACTCTCGCCCAAGCACGCTTAACTGCA-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGG
* * * * *
32032891 TATGATCGCA-TCGATCAACTCTTGCGCAATCTATTCATATAAACGTTGCCTCTTATCGCACTTG
771 TATGATCGCACCCG-TCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTG
* * *
32032955 CGCCTCGAATTTTAATGCAAATTCGACCAAATATCGATTCAAATTATTTATTTCGCAAAACGCAA
835 CGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAA
* *
32033020 ATAGCG
900 ATAACT
* * * * *
32033026 AATGAGTTACACCTTGTGAAGAAAATGCAACT-AAAAAAAA-TTATATGAAATAAATTGGGTGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* *
32033089 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCATGCACGCTTAA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* ** * * *
32033154 CAGCGGAGTTCTGATCAGATCCGGTGCATTAATGCTGTTGTGATCGCACCCGTCAACTCTTGCGC
131 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * *
32033219 AACCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCAAATTTGAATGCAAATTCGACC
196 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * **
32033284 AAATAACTTTTCAAATTATTTATTTCGCAAAACGCAAATAACG-AATTAGTTACACCACGTGGAG
261 AAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGTTTAG
* * * * * * *
32033348 AAATTGCAACTAAAAAAACTTTATATGAAATAAAGTGGGAGCGGTGCAACAGGTGGACTTCCCTA
325 AAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * * *
32033413 GAGGTCACCCATCTTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGAATCT
390 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
* * * * * * * *
32033478 AGTGTATTCGTTCTAGTATGATCGCACCCATCAACTCTTGTGCAATCTATTTATATAAAGGCCGC
455 GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
32033543 CCCTTATCGCA---------C----TT---T-----TT----C------C---TCAAATTATTTA
520 CCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTA
* * * * *
32033574 TTTCACAAAACGCAAATAACGAATTTGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTTA
585 TTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA-ATTA
* * * *
32033639 TAAGAAA-AAAACTGGGAAGGGTGCAACATGAGGACTTCCAAAGAGGTCACCCATCCTAGTACTA
649 TATGAAATAAAA-T-GGAGGGGTGCAACACGAGGACTTCCAGAGAGGTCACCCATCCTAGTACTA
* * * * * * * *
32033703 ATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATGAGATCCGGTACATTTGTGCTGGTATGAT
712 CTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGAT
* * *
32033768 CGCACCTGTCAACTTTTGCGCAATCTATTTATATAAAGGCTGACCCTTATCGCACTTGCGCCTCG
777 CGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCG
* * * * * *** *
32033833 AATTTTAAGGCAAATTCGACCGAATATCGTTTCAAATTATTAACTTTAAAAAAACGCAAATAACG
842 AATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTA-TTTCGCAAAACGCAAATAACT
* * * * * *
32033898 AATAAGTTACACCACGTGGAGAAAACGCAACTAAAAAAATA-TTATATGAAATAAAATGGTAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * *
32033962 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTTGCCCAAACACGCTTAA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * *
32034027 CTGCGGAGTTCTGACGGGATTCGGTGCATTAGTGCTGGTTTGATCGCACCCGTCAACTCTTGCGC
131 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * * *
32034092 AATCTACTCATATAAAGGCTACCTCTTATCGCAGTTGCGACTCGAATTTGAATGCAAATTCGACC
196 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * * * * **
32034157 AAATATCGTTTCAAATTATTTATTTCGCATAACGTAAATAA-CAGATGAGTTACACGACGTGGAG
261 AAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTA-ATTAGTTACACCATGTTTAG
**
32034221 AAAATGCAACTAAAAAAAA-TTGGATGAAATAAAATGGGAGGGGTGCAACACGAGGACTT-CCAA
325 AAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * *
32034284 GGAGGTCACCCATCCTAGTACTACTCTCGCCCATGCACGCTTAACAGCGGAGTTCTGATGAGATC
390 -GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* *
32034349 CGGTGCATTAATGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
454 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
* *
32034414 CCCCTTATCGCCCTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACTTTTCAAATTATTT
519 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTT
* * * * *
32034479 ATTTCGCAAAACGCATATAACGAATTAGTTACAACACGTGGAGAAATTGCAAC-AAAAAGAAACT
584 ATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAA-AAA--
* * *
32034543 TTATTTGAAATAAAATGGGAGCGGTGCAACACGTGGACTTCC-GAAGAGGTCACCCATCCTAGTA
646 TTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTTCCAG-AGAGGTCACCCATCCTAGTA
* * * ** *
32034607 CTACTCTCGCCCAAGCTCGCTTAACTG-AGGAGTTCTGATGGAATCCGGTGTATTAGCACTAGTA
709 CTACTCTCGCCCAAGCACGCTTAACTGCA-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTA
* * * **
32034671 TGATCGCACCCGTCAACTCTT-CTACAATCTATTTATATAAAGACCGCCCCTTATCGCACTTTTG
773 TGATCGCACCCGTCAACTCTTGC-GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCG
* * *
32034735 CCTCGAATTTTAATGCAAATTCTACCAAATAACGTTTCAAATTATTTATTTCGAAAAACGCAAAT
837 CCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAAT
*
32034800 AACG
902 AACT
* * * ** *
32034804 AATTAGCTACACCACGTGGAGAAAATGCAAC-AAAAAAACCTTTATAAGAAATAAAATGGGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * * * * * *
32034868 GTGCAACATGAGGACTTCCAAAGAGGTCACCCATACTAGTACTAATCTCACCAAAGCACGCTAAA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * * * *
32034933 TTGCGGAGTTCTAATGAGATCCGGTGCATTTGTTCTGGTATGATCGCACCTGTCAACTTTTGCGT
131 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* *
32034998 AATCTATTTATATAAAGGCTGGCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCG-CC
196 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * *
32035062 AAATATCGTTTCAGATTATTAATTTCGCAAAACGCAAATAACG-AATGAGTTACACCATGTGTAG
261 AAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGTTTAG
* * *
32035126 AAAATGCAATTAAAAAAAA-TTATATTAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
325 AAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
** ** * *
32035190 GAGGTCACCCATCCTAGTACTACTCTCG-CCAAGCACGCTTTCCT-TAGAGTTCTGGTGCGATCC
390 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
* *
32035253 GGTGCATTAGTGCTGGTATGATCGCATCCGTCAACT-TATGCGCAATCTATTCATATAAAGGCTG
455 GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT-TGCGCAATCTATTTATATAAAGGCTG
* * *
32035317 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGAAAATTCGACCAAATATCGTTTCAAATTAATT
519 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTT
* * * * * * *
32035382 ATTTTGGAAAACGCAAATAACGAATGAGTTACACCAAGTGGAGATAATGCAACTAAAAAAATATT
584 ATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA-ATT
* *
32035447 ATATGAACTAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG-GAGGTCACCCATCCTAGTACA
648 ATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAGTACT
* ** * * *
32035511 ACTCTCGCCCAAGCACGCTTGACTGTGGAGTTCTGATGGGATCCGGTGCATCAGTGATTGTATGA
711 ACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA
* * *
32035576 TCGTACCCGTCAACTCATGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTC
776 TCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTC
* * * *
32035641 GAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTTGGAAAACGCAAATAACA
841 GAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACT
* ** * * * * * *
32035706 AATGAGTTACATTAGGTGGAGATAATGCAACCAAAAAAATA-TTATATGAAATAAAACGGGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
* * ***
32035770 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCGTGAGCACGCTTAA
66 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * *
32035835 CTGTGGAGTTCTGATGGGATTCGGTGCATCAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
131 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * * *
32035900 AATCTGTTCATATATAGGCTGCCTCTTATAGCACTTGCGCCTCGAATTTCAATGCAAATTCGACC
196 AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * * * * * **
32035965 AAATATCTTTTCAAATTATTTATTTCGGAAAACGCAAATAACG-AATGAGCTACACCACGTGAAG
261 AAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGTTTAG
* *
32036029 AAAATGCAACTAAAAAAAATAT-TATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
325 AAAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * * * *
32036093 GAGGTCACCTATCCTAGTACTACTCTCGCCCATGCACGCTTAACAGCGGAGTTCTAATGAGATCC
390 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
* * * **
32036158 GGTGCATTAATGCTAGTATGATCGAACCCGTTTACTCTTGCGCAATCTATTTATATAAAGGCTGC
455 GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
* * *
32036223 CCCTTATCGCCCTTCCGCCTCGAATTTGAATGCAAATTCGACCAAATAACTTTTCAAATTATTTA
520 CCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTA
* * * * *
32036288 TTTCGCAAAACGCATATAACGAATTAGTTACAACACGTGGAGAAATTGCAAC-AAAAAGAAACTT
585 TTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAA-AAA--T
* * *
32036352 TATTTGAAATAAAATGGGAGCGGTGCAACACGTGGACTTCC-GAAGAGGTCACCCATCCTAGTAC
647 TATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTTCCAG-AGAGGTCACCCATCCTAGTAC
* * * * * ** *
32036416 TACTCTCGCCTAAGCTCGCTTAACTG-AGGAGTTCTGATGGAATCCTGTGTATTAGCACTAGTAT
710 TACTCTCGCCCAAGCACGCTTAACTGCA-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTAT
* * **
32036480 GATCGCACCCGTCAACTCTT-CTGCAATCTATTTATATAAAGACCGCCCCTTATCGCACTTTTGC
774 GATCGCACCCGTCAACTCTTGC-GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGC
* * * *
32036544 CTCGAATTTTAATTCAAATTCTACCAAATAACGTTTCAAATTATTTATTTCAG-AAATCGCAAAT
838 CTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTC-GCAAAACGCAAAT
*
32036608 AACG
902 AACT
* * * * *
32036612 AATTAGCTACACCACGTGGAGAAAATGCAACT-AAAAAAACTTTATGA-GAAATAAAATGGGCGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTAT-ATGAAATAAAATGGGAGG
* * * * * * ** *
32036675 GGTGCAACATGAGGACTTCCAAAGAGGTGACCCATACTAGTACTAATCTCACAAAAGCACGCTAA
65 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * * ** * *
32036740 ATTGCGGAGTTCTAATGAGATCCGGTGCATTTGTTTTGGTATGATCGCACCTGTCAACTTTTGCG
130 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* * *
32036805 TAATCTATTTATATAAAGGCTGGCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCG-C
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* * * * * **
32036869 CAAATATCGTTTCAGATTATTAATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGAA
260 CAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGTTTA
* ** *
32036933 GAAAATGCAACTAAAAAAAACATTATATGAAATAAAATGGGAGGTTTGTAACACGAGGACTTCCC
324 GAAAATGCAACTAAAAAAAA-TTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* * * * * *
32036998 AGGAGATCACCCATCCTAGTACTACTCTCGCCCATGCACGCTTAATTCCGGAGTTCTGATGGAAT
388 AAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
** * * * * * * * *
32037063 -CTATTCATATAAATGTTAGTATGATCGCACCCGTCAACTCTTGTGGAATCTATTCATATAAATG
453 CCGGTGCAT-T-AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* * * * * *
32037127 TTGCCCCTTATCGCAATTGCGCCTTGAATTTGAATGGAAATTCGAACAAATATCGTTTCAAATTA
516 CTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTA
** * * * * *
32037192 TTTATTAAGCAAAACGCAAATAACGAATGAGTTACACCAGGTGAAGAAAATGCAACAAAAAAAAT
581 TTTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA-
*
32037257 ATTATATGAAATAAAATGCGAGGGGTGCAACACAAGGACTTCCCAG-GAGGTCACCCATCCTAGT
645 ATTATATGAAATAAAATG-GAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAGT
* * * *
32037321 ACAACTCTCGCCCAAGCACGCTTAACTGC-GTAGTTCTGATGGGATCCGATGCATTAGTGGTTGT
708 ACTACTCTCGCCCAAGCACGCTTAACTGCAG-AGTTCTGATGGGATCCGGTGCATTAGTGCTGGT
* * *
32037385 ATGATCGTACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCA
772 ATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCG
**
32037450 CCTCGAATTTGAATGCAAATTCGACCAAATATTGTTTCAAATTATTTATTTCGCAAAACGCAAAT
837 CCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAAT
*
32037515 AACG
902 AACT
* * **
32037519 AATGAGTTACACCAAGTGGGGAAAATGCAACT-AAAAAAAATATTATATGAAATAAAATGGGAGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAAT-TTATATGAAATAAAATGGGAGG
* *
32037583 GGTGCAACACGAGGACTGT-CCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAATCACGTTT
65 GGTGCAACACGAGGACT-TCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * * *
32037647 AACTGCGAAGTTTTAATGGGATCTGGTGCATTAGTGCTGGTATAATCGCACCCGTCAACTCTTGC
129 AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC
* * * *
32037712 GCAATCTGTTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGA
194 GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * * * * * **
32037777 CCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAATTACACCACGTGGA
259 CCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTA
* * * *
32037842 GAAAATGCAACAAAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGATTTCCC
324 GAAAATGCAACTAAAAAAAA-TTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* * * * *
32037907 AGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCACACTTAACTGCGGAGTTTTGATGGTAT
388 AAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGAT
* * * * * * *
32037972 CCGATGCATTAGTGATAGTATAATCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGTT
453 CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* * * ** *
32038037 GCCCATTATCGCAATTGCGCCTCGAATTTGAATGCAAATTCAATAAAATATCGTTTCAAATTATT
518 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATT
* * * *
32038102 TATTTCGCAAAACGCAAATAACAAATGAGTTACACAACGTGAAGAAAATGCAAC-AAAAAAAATT
583 TATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAATT
* * * *
32038166 ATCTGAAATAAAATGGGAGGTGTGCAACACGAGGACTTCCCA-AGAGGTCGCCCATCCTAGTATT
648 ATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACTT-CCAGAGAGGTCACCCATCCTAGTACT
* * * * * *
32038230 ACTCTTGCCCAAGCGCGCTTAACTGCGGCGTTTTGATGGGATCCGGTGCATTAGAGCTGGTATGA
711 ACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA
* * * **
32038295 TCACACCCGTCAACCCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCAACTC
776 TCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTC
* * * * * *
32038360 GAATTTTAACGCAAATTCGACCAAATATCATTTCAAATTATTTATTTCGCAAAATGCAAATAACG
841 GAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACT
* * * * * **
32038425 AATGAGTTGCACCACGGGAAGAAAATGCAACT--AAAAAAA-TTATATGAAATAAAATAAGAGGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
*
32038487 GTGCAACACGAGGACAT-CCAAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
66 GTGCAACACGAGGACTTCCCAA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * *
32038551 CCTGCGGAGTTCTGATGGGATCCAGTGGATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCG
130 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* *
32038616 CAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGAC
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
** * * * * **
32038681 CAAATATTGGTTT-AAGTTAATTATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGG
260 CAAATA-ACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGTTT
*
32038744 AAAAAATGCAAC-AAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
323 AGAAAATGCAACTAAAAAAAAT-TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * * *
32038808 CAAGAGGTGACCCATCCTAGTACTACTCTCGCCCAATCACGTTTAACTACGAAGTTTTAATGGGA
387 CAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
* * * * *
32038873 TCCGGTGCATTAGTGCTGGTATAATCGCACTCGTCAACTCTTGCGCAATCTGTTCATATAAAGGT
452 TCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
** *
32038938 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATTGGTTT-AAGTTA
517 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATA-ACGTTTCAAATTA
* * * * * *
32039002 ATTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACAAAAAAAAT
581 TTTATTTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAA-
32039067 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTGTCCA-AGAGGTCACCCATCCTAGT
645 ATTATATGAAATAAAAT-GGAGGGGTGCAACACGAGGACT-TCCAGAGAGGTCACCCATCCTAGT
* * * * *
32039131 ACTACTCTCGCCCAATCACGTTTAACTAC-GAAGTTTTAATGGGATCCGGTGCATTAGTGCTGGT
708 ACTACTCTCGCCCAAGCACGCTTAACTGCAG-AGTTCTGATGGGATCCGGTGCATTAGTGCTGGT
* * * * *
32039195 ATAATCGCACTCGTCAACTCTTGCGCAATCTGTTCATATAAAGGTTGCCCCTTATCGCACTTGCG
772 ATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCG
* * *
32039260 CCTCGAATTTGAATTCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAAT
837 CCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAAT
**
32039325 AAGG
902 AACT
* * * * *
32039329 AATGAATTACACCACGTGGAGAAAATGCAAC-AAAAAAAACA-TTATATGAAATAAAATAGGAGG
1 AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAA-ATTTATATGAAATAAAATGGGAGG
* *
32039392 GGTGCAACACGAGGATTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
65 GGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
* * * *
32039457 CCTGCGGAGTTCTGATGGGATCCAGTGGATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCG
130 ACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
* *
32039522 CAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGAC
195 CAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
** * * * * **
32039587 CAAATATTGGTTT-AAGTTAATTATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGG
260 CAAATA-ACGTTTCAAATTATTTATTTCGCAAAACGCAAATAA-GTAATTAGTTACACCATGTTT
*
32039650 AAAAAATGCAAC-AAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
323 AGAAAATGCAACTAAAAAAAAT-TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
32039714 CA
387 CA
32039716 CCCGTCAACT
Statistics
Matches: 19144, Mismatches: 3059, Indels: 1479
0.81 0.13 0.06
Matches are distributed among these distances:
821 4 0.00
822 229 0.01
823 7 0.00
824 56 0.00
825 49 0.00
828 3 0.00
829 1 0.00
830 1 0.00
832 1 0.00
833 3 0.00
835 1 0.00
836 2 0.00
838 2 0.00
839 2 0.00
841 1 0.00
846 3 0.00
849 175 0.01
850 21 0.00
851 1 0.00
852 174 0.01
853 11 0.00
854 31 0.00
855 149 0.01
856 8 0.00
857 7 0.00
858 12 0.00
859 2 0.00
860 1 0.00
861 11 0.00
862 106 0.01
863 22 0.00
864 61 0.00
865 35 0.00
866 15 0.00
867 32 0.00
868 110 0.01
869 77 0.00
870 15 0.00
871 209 0.01
872 217 0.01
873 289 0.02
874 7 0.00
875 1 0.00
876 2 0.00
877 7 0.00
878 5 0.00
879 7 0.00
880 16 0.00
881 179 0.01
882 5 0.00
883 3 0.00
884 3 0.00
885 4 0.00
886 156 0.01
887 359 0.02
888 460 0.02
889 484 0.03
890 19 0.00
891 16 0.00
892 3 0.00
893 4 0.00
894 11 0.00
895 401 0.02
896 278 0.01
897 64 0.00
898 6 0.00
899 13 0.00
900 157 0.01
901 286 0.01
902 1412 0.07
903 861 0.04
904 427 0.02
905 910 0.05
906 3341 0.17
907 2331 0.12
908 1473 0.08
909 1114 0.06
910 1167 0.06
911 259 0.01
912 7 0.00
913 2 0.00
914 3 0.00
916 3 0.00
917 1 0.00
918 1 0.00
920 2 0.00
922 2 0.00
924 1 0.00
925 5 0.00
931 5 0.00
932 1 0.00
933 1 0.00
934 1 0.00
937 1 0.00
938 1 0.00
940 8 0.00
942 1 0.00
943 9 0.00
945 3 0.00
946 5 0.00
947 1 0.00
948 3 0.00
949 1 0.00
951 4 0.00
953 3 0.00
954 2 0.00
955 2 0.00
957 4 0.00
958 2 0.00
959 5 0.00
960 4 0.00
961 2 0.00
962 4 0.00
964 2 0.00
965 2 0.00
966 3 0.00
968 2 0.00
970 2 0.00
972 1 0.00
973 5 0.00
974 2 0.00
975 3 0.00
976 12 0.00
977 2 0.00
978 1 0.00
979 9 0.00
981 1 0.00
982 2 0.00
983 13 0.00
984 6 0.00
985 5 0.00
986 2 0.00
987 1 0.00
988 5 0.00
990 4 0.00
991 1 0.00
992 1 0.00
993 8 0.00
994 9 0.00
995 4 0.00
997 1 0.00
998 3 0.00
999 11 0.00
1000 8 0.00
1001 5 0.00
1002 4 0.00
1003 4 0.00
1004 2 0.00
1005 6 0.00
1006 7 0.00
1007 13 0.00
1008 7 0.00
1009 7 0.00
1010 2 0.00
1011 3 0.00
1012 26 0.00
1013 11 0.00
1014 12 0.00
1015 2 0.00
1016 1 0.00
1017 1 0.00
1018 1 0.00
1019 1 0.00
1020 7 0.00
1022 1 0.00
1023 8 0.00
1024 6 0.00
1025 15 0.00
1026 302 0.02
1027 34 0.00
1028 4 0.00
1029 14 0.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (905 bp):
AATTAGTTACACCATGTGTAGAAAATGCAACTAAAAAAAAATTTATATGAAATAAAATGGGAGGG
GTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
AATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
AAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGTAATTAGTTACACCATGTTTAGA
AAATGCAACTAAAAAAAATTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAG
AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG
GTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCC
CCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTAT
TTCGCAAAACGCAAATAACTAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAATTATA
TGAAATAAAATGGAGGGGTGCAACACGAGGACTTCCAGAGAGGTCACCCATCCTAGTACTACTCT
CGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA
CCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATT
TGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACT
Found at i:32025470 original size:13 final size:13
Alignment explanation
Indices: 32025452--32025476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32025442 ATTTAAAAAA
32025452 TGCAACACGAGGG
1 TGCAACACGAGGG
32025465 TGCAACACGAGG
1 TGCAACACGAGG
32025477 ATTTCCCAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.36, T:0.08
Consensus pattern (13 bp):
TGCAACACGAGGG
Found at i:32026493 original size:302 final size:302
Alignment explanation
Indices: 32025462--32026499 Score: 1326
Period size: 302 Copynumber: 3.4 Consensus size: 302
32025452 TGCAACACGA
* * * * *
32025462 GGGTGCAACACGAGGATTTCCCAGGAGGTGACCTATCCTAGTACTACTCTCACCCAATCACGCTT
1 GGGTGCAACACGAGGATATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * * *
32025527 AGCTGCGGAGTTCTAATGGGATACGGTGCACTAGTGCTGGTATGATTGCACGCGTCAACTCTTGC
66 AACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACCCGTCAACTCTTGC
* * * *
32025592 GCAATCTATTAACATAAA-GATCGCCCCTTATCGCACTTGTGCCTCAAATTTGAATGCAAATTCG
131 GCAATCTATTTATATAAAGGCT-GCCCCTTATCGCACTTGCGCCTCAAATTTGAATGCAAATTCG
* *
32025656 ACCAAATAACGTTTTAAATTATTTATTTTG-AAAATCACAAATAACTAATTAATTACACCACGTT
195 ACCAAATAACGTTTTAAATTATTTATTTTGCAAAA-CACAAATAACTAATTAGTTACACCACGTG
*
32025720 TAGAAAATGCAACTAAAAAAACTTTATCTGAAATAAAATGAGAG
259 TAGAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGAGAG
** * **
32025764 GGAAGCAACACGA--ACACTGCCCAGGAGGTCACCCATTGTAG-ACTACTCTCGCCCAAGCACGC
1 GGGTGCAACACGAGGATA-T-CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * * * *
32025826 -TAGACAGTAGAGTTCTGATGGGA-ACCG-GCACTCTAGTGCTGGTATGATCGCCCCCGTAAACT
64 TTA-ACTGCAGAGTTCTGATGGGATACGGTGCA-T-TAGTGCTGGTATGATTGCACCCGTCAACT
* * *
32025888 CTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCTTCCAATTTGAATGCAAA
126 CTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCAAATTTGAATGCAAA
* * * *
32025953 TTCGACCAAATAATGTTTCAAATAATTTATTTTGCAAAACCCAAAATAACTAATTAGTTACACCA
191 TTCGACCAAATAACGTTTTAAATTATTTATTTTGCAAAACAC-AAATAACTAATTAGTTACACCA
* * *
32026018 CGTGTAGAAAATACAACTAAAAAAACTTTTTACATGAAATAAAATGGGAG
255 CGTGTAGAAAATGCAACTAAAAAAAC--TTTATATGAAATAAAATGAGAG
* * * * * * *
32026068 GGGTGAAACACGAAGACT-TCCCAGAAGGTCACCCATCCAAGTACTACTTTCGCCTAAGCATGCT
1 GGGTGCAACACGAGGA-TATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCT
* *
32026132 TAACTGCACG-TTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCT-CACCCGTCAACTCT
65 TAACTGCA-GAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGAT-TGCACCCGTCAACTCT
* * *
32026195 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTACACCTCGAATTTGAATGCAAATT
128 TGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCAAATTTGAATGCAAATT
* * * *
32026260 CGACCATATAACGTTTTAAATTATTTATTTCGCAGAACGCAAATAAC-ATATTAGTTACACCACG
193 CGACCAAATAACGTTTTAAATTATTTATTTTGCAAAACACAAATAACTA-ATTAGTTACACCACG
*
32026324 TGTAGAAAATGCAACTAAAAAAACTTTATATGAAATAAATTGAGAG
257 TGTAGAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGAGAG
* * * *
32026370 GGGTGCGACACGAGGATATCCCAGGAGGTCACCCATCCTAGTACTACTGTCGCACAAGAACGCTT
1 GGGTGCAACACGAGGATATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
*
32026435 AACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACACGTCAACTCTTGC
66 AACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACCCGTCAACTCTTGC
32026500 CCCTCGAATT
Statistics
Matches: 627, Mismatches: 86, Indels: 46
0.83 0.11 0.06
Matches are distributed among these distances:
299 3 0.00
300 6 0.01
301 152 0.24
302 209 0.33
303 1 0.00
304 92 0.15
305 154 0.25
306 7 0.01
307 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (302 bp):
GGGTGCAACACGAGGATATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
AACTGCAGAGTTCTGATGGGATACGGTGCATTAGTGCTGGTATGATTGCACCCGTCAACTCTTGC
GCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCAAATTTGAATGCAAATTCGA
CCAAATAACGTTTTAAATTATTTATTTTGCAAAACACAAATAACTAATTAGTTACACCACGTGTA
GAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGAGAG
Found at i:32027237 original size:168 final size:168
Alignment explanation
Indices: 32026952--32027278 Score: 437
Period size: 168 Copynumber: 1.9 Consensus size: 168
32026942 TAAAGGTCAC
*
32026952 CCATCCTAGTACTACTCTCGTCCAAGCACGCTTAACTGCAGAGTTTTGATGGGATCAGGTGCATT
1 CCATCCTAGTACAACTCTCGTCCAAGCACGCTTAACTGCAGAGTTTTGATGGGATCAGGTGCATT
* ** *
32027017 AGTGCTAGTATGATCGCACCCATCAACTCTTGCGCAATCTAATTTCATAAAGGCTACCTTTTATC
66 AGAGCTAGTATGATCGCACCCATCAACTCTTGCGCAATCTAATTTCATAAAGGCTACCCCTTATA
*
32027082 GCCCTTGCGCCTCAAATTTGAATGCAAATTCGACCAAA
131 GCACTTGCGCCTCAAATTTGAATGCAAATTCGACCAAA
* * *
32027120 CCATCCTAGTACAACTCTCG-CCTAAGCACGCTTAGCTGCGGAGTTTTGATGGGATC-CGTGGCA
1 CCATCCTAGTACAACTCTCGTCC-AAGCACGCTTAACTGCAGAGTTTTGATGGGATCAGGT-GCA
* * * *
32027183 TTAGAGCTGGTATGATCGC-CCGCGTCAACTCTTGCGTAATCT-ATTTATATAAAGGCTACCCCT
64 TTAGAGCTAGTATGATCGCACC-CATCAACTCTTGCGCAATCTAATTT-CATAAAGGCTACCCCT
* ** *
32027246 TATAGCACTTGCGCTTTGAGTTTGAATGCAAAT
127 TATAGCACTTGCGCCTCAAATTTGAATGCAAAT
32027279 AACTAATTAG
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
167 10 0.07
168 128 0.93
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (168 bp):
CCATCCTAGTACAACTCTCGTCCAAGCACGCTTAACTGCAGAGTTTTGATGGGATCAGGTGCATT
AGAGCTAGTATGATCGCACCCATCAACTCTTGCGCAATCTAATTTCATAAAGGCTACCCCTTATA
GCACTTGCGCCTCAAATTTGAATGCAAATTCGACCAAA
Found at i:32028107 original size:302 final size:303
Alignment explanation
Indices: 32027273--32033556 Score: 7722
Period size: 302 Copynumber: 20.8 Consensus size: 303
32027263 GAGTTTGAAT
* * *
32027273 GCAAATAACTAATTAGTTACACCACGT-TGAGAAAATGCAACTCAACAAAA--TTATATGAAATA
1 GCAAATAACGAATTAGTTACACCACGTGT-AGAAAATGCAACTAAAAAAAACTTTATATGAAATA
* * * *
32027335 AAATGGGAGGGCTGCAACACGAGGACTTCCCAGGAGTTCACCCAACCTAGTACTACTCTCACCCA
65 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * * * * *
32027400 AGCAAGCATAACTACGGAGTTCAGATGGGATACGGTGTATTAGTGCTGGTATGATTGCACCCGTC
130 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * * *
32027465 AACTCTTTCGCAACCTAATTATATAAAGGTTGCCCCTTATCGCACTTGCGCCTC-AGATTTGAAT
195 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGA-ATTTGAAT
* * * *
32027529 GCAAATTCGATCAAATAACATTTCGAATGATTTATTTCGCAAAAC
259 GCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * * * * * *
32027574 GCCAATAACTAATTAGTTACACGATGTTTAGACAATGCGACT-AAAAAAA--TTATATAAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * *
32027636 AATGGGAGGGGTGCAACATGAGGATTTCCCAGGAGGTGACCTATCCTAGTACTACTCTCAG-CCA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC-GCCCA
* * * * * *
32027700 AGCACGCTTAGCTGCGGAGTTCTAATGGGATACGGTGCACTAGTGCTGGTATGATTGCACGCGTC
130 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * * * *
32027765 AACTCTTGGGCAATCTATTTACATAAA-GATCGCCCCTTATCGCACTTGTGCCTCAAATTTGAAT
195 AACTCTTGCGCAATCTATTTATATAAAGGCT-GCCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* *
32027829 GCAAATTCGACCAAATAACGTTTTAAATTATTTATTTCGAAAAAC
259 GCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * * * *
32027874 ACAAATAACTAATTAGTTACACCACGTTTAGAAAATACAACTAAAAAAAACTTTATCTAAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* ** ** * *
32027939 AATGAGAGGGAAGCAACACGAACACTTCCCAGGAGGCCATCCATCCTAG-ACTACTCTCGCCCAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * ** * * *
32028003 GCACGCTTGACAGTAGAGTTCTGATGGGATAC-G-ACACTCTAGTGCTGGTATGATTGCACCCGT
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA-T-TAGTGCTGGTATGATCGCACCCGT
* * * *
32028066 AAACTCTTGCGCAATCTATTTATATAAAGCCTGCCCCTTATCGCACTTGCGCTTCCAATTTGAAT
194 CAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* * *
32028131 GCAAATTCGACCAAATAATGTTTCAAATAATTTATTTTGCAAAAC
259 GCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * *
32028176 CCAAATAACTAATTAGTTACACCACGTGTAGAAAATACAACT-AAAAAAACTTTTTACATGAAAT
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAAC--TTTATATGAAAT
* * * * * *
32028240 AAAATGGGAGGGGTGAAACACGAAGACTTCCCAGAAGGTCACCCATCCAAGTACTACTTTCGCCT
64 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCC
*
32028305 AAGCATGCTTAACTGC--ACGTTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
129 AAGCACGCTTAACTGCGGA-G-TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * * *
32028368 GTCAACTCTTGCGCAATCTATTTATATAAATGCTG-CCCTTATCGCACTTACGCCTTGAATTTCA
192 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGA
** * *
32028432 ATG-AATATTATACCAAATAACATTTCAAATTATTTATTTCACAAAAC
257 ATGCAA-ATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * *
32028479 ACAAATAACTAATTAGTTACACCACGTGTTGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * **** * * * * **
32028544 AAT--G-GGGGTGCAACACAAGCACCGGTCA--A-CTCTTGCGCAAT-CT-GTTTATATAAAGCT
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC--AC-CCATCCTAG--TA-CT-ACTCT
* * * * * * * *
32028601 TGCCCAAGCACGGTTAATTACGAAGTTCTGATGAGATCCGGTGCATTAGTGCTGGTCTAATCGCA
124 CGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA
* *
32028666 CCCGTCAACTCTTGCGCAATCTATTTATATAAA-GCTTGCCCCTTATCGCACTTGCGCATCCAAT
189 CCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC-TGCCCCTTATCGCACTTGCGCCTCGAAT
* *
32028730 TTGAAGGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAAC
253 TTGAATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * * * *
32028781 GCAAATAATGAATTAGTTACACCATGTGGAAAAAATACAACTAAAAAAAAACATTATATGAAATA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACT-AAAAAAAACTTTATATGAAATA
* * * * * * *
32028846 TAATGGGAGGGGTGCAACTCGAGGACTTCCCAGGAAGTTACCCATGCTAGTATTACTCTCGCACA
65 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * * *
32028911 GGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTCCTGGTAAGTTCGCACCCGTC
130 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * * * *
32028976 AACACTTGGGCAACCTATTTATATAAAGGCTGCCCCTTATTGCACTAGCGCCTCGAATTTGAATG
195 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATG
* * *
32029041 CAAATTCGACCATATAACGTTTTAAATTATTTATTTCGCAGAAC
260 CAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * *
32029085 GCAAATAAC-ATATTAGTTACACCATGTGTAGAATATGCAACT-AAAAAAACTTTATATGAAACA
1 GCAAATAACGA-ATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATA
*
32029148 AAATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
65 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * *
32029213 AGCACGCTTATCTGCAGAGTTTTGATGGGATCCGGTGCATTAGTGCAT-TTATGATCGCACCCGT
130 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC-TGGTATGATCGCACCCGT
* *
32029277 CAACTCTTGCGAAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAT
194 CAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* * *
32029342 GCAAATTCGACCAAATATCGTTTGAAATTATTTATTTTGCAAAAC
259 GCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* *
32029387 GTAAATAACGAATTAGTTACACCACGTGTAGAAAATGTAACT-AAAAAAACTTTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * ** * *
32029451 ATTGAGAGGGGTGCGGCACGAGGACATCTCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * * * * *
32029516 GAACGCTTAACTGTGGAGTTCTGATTGGAACAGGTGCATTAGTAAC-GGTATGATCGCACCCGTC
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT-GCTGGTATGATCGCACCCGTC
* * * ** *
32029580 AACTCTTGGGTAATCTATTTATATAAAGGCTGCCCCGTATCAAACGTGCGCCTCGAATTTGAATG
195 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATG
* *
32029645 CAAATTCGACCAAATATCGGTTGC-AATTATTTATTTCGCAAAAC
260 CAAATTCGACCAAATAAC-GTTTCAAATTATTTATTTCGCAAAAC
* ** * * * *
32029689 GCAAATAACGATTTTTTTACACCACGTGTAGAAAATACGACTAAAAAAAACTCTATTTGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * * *
32029754 AATGGGAGGTGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCAAGTATTACTCACGCCCAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
*
32029819 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCA
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * * *
32029884 ACTCTTACGCAATCTATTCATATAAAGGTTGCCTCTTATCGCTCTTGCGCCTCGAATTTGAAT-C
196 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGC
* * *
32029948 AAAATTCGTCCAAATATCGTTTCAAATTATTTCTTTC-CTAAAAC
261 -AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGC-AAAAC
* * * *
32029992 GCAAATAACGAATTAGTAACACCACTTGGAGAAAATGCACCTAAAAAAAACTTTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * * *
32030057 AACGGGAGGGGTGCAACACGA-GATTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCACCCTA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * *
32030121 GCACGCTT-ACTTGCGGCGTTCTGATGGGATCTGGTGCGTTAGTGCTGGTATGATCGCACCCGTC
131 GCACGCTTAAC-TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * * *
32030185 AACTCTTGCGCAACCTATTTATATAAAGGCTGCCCCTTATGGCACTTACGCCTCGAATTAGAATG
195 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATG
* * * * *
32030250 CAAATTCGACCATATAAGGTCTCAACTTATTTATTTCGCAAAAT
260 CAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * *
32030294 TCAAATAGC-ATATTAGTTA-ATCTACGTGTAGAAAATGCTACTAAAAGAAATACTTTATATGAA
1 GCAAATAACGA-ATTAGTTACA-CCACGTGTAGAAAATGCAACTAAAA-AAA-ACTTTATATGAA
* * ** * *
32030357 TTAAAATGGGAGGGGTGCAACACAAGGACTTCCCAAAAGGTTACCCATCCTAGTACTATTCTCGC
62 ATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
* * * *
32030422 CGACGCACGCTTGACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCGCACCC
127 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * * * **
32030487 ATCAACTCTTGCGCAATCTATGTGTATAAAGGATGCCCCTTATCGTGCTTGCGCCTCGAATTTGA
192 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGA
* *
32030552 ATGCAAATTCGACCGTAA-AACGTTTCAAATTATTTATTTCGGAAAAC
257 ATGCAAATTCGACC-AAATAACGTTTCAAATTATTTATTTCGCAAAAC
* ** *
32030599 GCAAATAACGAATTAGTTACACCATGTGGGGAAAATGCAACT-AAAAAAAGTTTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * * * *
32030663 AATGAGAGTGGTGCAATAAGAGGACTTCCCAAGAGGTCACCCATCCTAGTTCTACTCTCGCCCAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * *
32030728 GCACGCTTAACTGCGGAGTTTTAATAGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * * * *
32030793 GCTCTTGTGGAATCTATTTATATAAAGGTTGCCCCTTATCGCCCTTGCGCCTCGAATTTGAATGT
196 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGC
* * *
32030858 AAATTCGATCAAATAACTTTTCAAATTATTTATTTTGCAAAAC
261 AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * * * *
32030901 ACAAACAACGAATTAGTTACACCACGTGGAGAAATTGCAAGTAAAAAAAACTTTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * * *
32030966 AATGGGAGCGGTGCAACACGTGGACTTCCCAGGAGGTCACCCGTCGTAGTACTACTCTCGCTCAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * * * *
32031031 GCACGCTT-A--GCGGAGTTCTAATGGAATCCGGTGTATTAGTACTAGTATGATCGCACCCGTCA
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* *
32031093 ACTCTTGTGCAATCTATTTATATAAAGGCTGCCCCTTATGGCACTTGCGCCTCGAATTTGAAT-C
196 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGC
* * *
32031157 AAATTCGACCATATAATGTTTCAAATTATTTATTTCGCAAAAT
261 AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
** * ** * *
32031200 TAAAATAAC-ATATTAGGTA-ATCTTCGTGTAGAAAATGCTACTAAAAGAAATACTTTATATGAG
1 GCAAATAACGA-ATTAGTTACA-CCACGTGTAGAAAATGCAACTAAAA-AAA-ACTTTATATGAA
* * ** * *
32031263 TTAAAATGGGAGGGGTGCAACACAAGGACTTCCCAAAAGGTTACCCATCCTAGTACTCCTCTCGC
62 ATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
* * * * * *
32031328 CGAAGCATGCTTGACTGCGAAGTTCTGATGGGATCCGGTGCGTTAGTGCTGGTATGATCGCACTC
127 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
** * * *
32031393 GTCAACTCTTGCGCAATCTATGGATATAAAGGCTGCCCCTTATCACGCTTGCGCCTCAAATTTGA
192 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGA
* *
32031458 ATGCAAATTCGACCATATAACGTTTCAAATTATTTATTTCGGAAAAC
257 ATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* *
32031505 GCAAATAACGAATTAGTTACACCATGTGGAGAAAATGCAACT-AAAAAAACTTTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * * *
32031569 AATGGGAGGGGTACAACAAGAGGACTTCCCAAGAGGTCACCCATCCTAGTTCTACTCTCGCCGAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * * *
32031634 GCACGCTTAACTGCGGAGTTTTAATAGGATCCGGTGCATTAGTGCTGGTATGATCGCACCTGTCA
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * *
32031699 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTTGAATTTGAATGT
196 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGC
* * *
32031764 AAATTAGACCAAATAGCTTTTCAAATTATTTATTTCGCAAAAC
261 AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* *
32031807 GCAAATAACGAATTAGTTACACCACGTGGAGAAAATGCAAGTAAAAAAAACTTTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * * *
32031872 AATGGGAGCGATGCAACACGTGGACTTCCCAGGAGGTCACCCATCATAGTACTGCTCTCGCCCAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * * * * * *
32031937 GCACGCTTAACTGCAGAGTTCTGATGGAATTCGGTGTATTAGTACTAGTATGATTGCACCCGTCA
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * * *
32032002 ACTCTTGTGCAATCTATTTATATTAAGGCTGCCCGTTATGGCACTTGCGCCTCGAATTTGAATGC
196 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGC
* * * * *
32032067 AAATTTGACCATATAACGTTTCGAATAATTTATTTCGCAAAAT
261 AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * *
32032110 TCAAATAAC-ATATTAGTTA-ATCTACGTGTAGAAAATGCTACTAAAAGAAATACTTTATATGAA
1 GCAAATAACGA-ATTAGTTACA-CCACGTGTAGAAAATGCAACTAAAA-AAA-ACTTTATATGAA
* * ** ** *
32032173 TTAAAATGGGAGGGGTGCAACACAAGGACTTCCCAAAAGGTTGCCCATCCTAGTACTATTCTCGC
62 ATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
* * * *
32032238 CGAAGCACGCTTGACTACGGAGTTCTGATGGGATCCGGTGCGTTAGTGCTGGTATGATCGCACCC
127 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * *
32032303 GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCTCTTATCGCAGTTGCGCCTCGAATTTGA
192 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGA
* * * *
32032368 ATGCAAATTCGACCAAATATCGTTTCATATTATTTATTTAGCATAAC
257 ATGCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* *
32032415 GCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAA-TATTATATGAAATA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACT-TTATATGAAATA
* **
32032478 AAATTGGAGGGGTGCAACACGAGGACTTCCCAAAAGGTCACCCATCCTAGTACTACTCTCGCCCA
65 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* ** *
32032543 AGCA--CTTAAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCAAGTATGATCCCACCCGT
130 AGCACGCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * * * * * *
32032606 CAACTCTTGTGCAAGCTATTCATATAAATGTTGCCCCTAATCGCAATTGCGCCTCGAATTTGAAT
194 CAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* * * *
32032671 GCAAATTCGACCAAATATCATTTGAAATTATTTATTTCGCAAAAT
259 GCAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * *
32032716 GCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAA-TTAAAAAAA--TTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* *
32032778 AATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACAACTCTCGCCCAA
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * * * *
32032843 GCATGCTTAACTGAGGAGTTCTAACGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-TCGATC
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG-TC
* * * * *
32032907 AACTCTTGCGCAATCTATTCATATAAACGTTGCCTCTTATCGCACTTGCGCCTCGAATTTTAATG
195 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATG
* *
32032972 CAAATTCGACCAAATATCGATTCAAATTATTTATTTCGCAAAAC
260 CAAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* * ** *
32033016 GCAAATAGCGAATGAGTTACACCTTGTGAAGAAAATGCAACTAAAAAAAA--TTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * *
32033079 ATTGGGTGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAT
66 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* ** * * *
32033144 GCACGCTTAACAGCGGAGTTCTGATCAGATCCGGTGCATTAATGCTGTTGTGATCGCACCCGTCA
131 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* * *
32033209 ACTCTTGCGCAACCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCAAATTTGAATGC
196 ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGC
*
32033274 AAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAAC
261 AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
* *
32033317 GCAAATAACGAATTAGTTACACCACGTGGAGAAATTGCAACT-AAAAAAACTTTATATGAAATAA
1 GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
* * * * *
32033381 AGTGGGAGCGGTGCAACAGGTGGACTTCCCTA-GAGGTCACCCATCTTAGTACTACTCTCGCCCA
66 AATGGGAGGGGTGCAACACGAGGACTTCCC-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * ** * * * * *
32033445 AGCACGCTTAACTGCAGAGTTCTGATGGAATCTAGTGTATTCGTTCTAGTATGATCGCACCCATC
130 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* *
32033510 AACTCTTGTGCAATCTATTTATATAAAGGCCGCCCCTTATCGCACTT
195 AACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTT
32033557 TTTCCTCAAA
Statistics
Matches: 5139, Mismatches: 749, Indels: 189
0.85 0.12 0.03
Matches are distributed among these distances:
296 2 0.00
297 2 0.00
298 4 0.00
299 172 0.03
300 560 0.11
301 683 0.13
302 1820 0.35
303 886 0.17
304 433 0.08
305 538 0.10
306 33 0.01
307 3 0.00
308 2 0.00
309 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.28
Consensus pattern (303 bp):
GCAAATAACGAATTAGTTACACCACGTGTAGAAAATGCAACTAAAAAAAACTTTATATGAAATAA
AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
ACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGC
AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAAC
Found at i:32034138 original size:303 final size:302
Alignment explanation
Indices: 32033562--32039715 Score: 8385
Period size: 302 Copynumber: 20.4 Consensus size: 302
32033552 CACTTTTTCC
* **
32033562 TCAAATTATTTATTTCACAAAACGCAAATAACGAATTTGTTACACCACGTGGAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * * *
32033627 AAAAAAACT-TTATAAGAAA-AAAACTGGGAAGGGTGCAACATGAGGACTTCCAAAGAGGTCACC
66 AAAAAAA-TATTATATGAAATAAAA-TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* * * * * * *
32033690 CATCCTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATGAGATCCGGTACATTT
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
* * * *
32033755 GTGCTGGTATGATCGCACCTGTCAACTTTTGCGCAATCTATTTATATAAAGGCTGACCCTTATCG
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
* * *
32033820 CACTTGCGCCTCGAATTTTAAGGCAAATTCGACCGAATATCGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* *** * *
32033864 TCAAATTATTAACTTTAAAAAAACGCAAATAACGAATAAGTTACACCACGTGGAGAAAACGCAAC
1 TCAAATTATTTA-TTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAAC
*
32033929 TAAAAAAATATTATATGAAATAAAATGGTAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
65 TAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * * *
32033994 ATCCTAGTACTACTCTTGCCCAAACACGCTTAACTGCGGAGTTCTGACGGGATTCGGTGCATTAG
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* * * *
32034059 TGCTGGTTTGATCGCACCCGTCAACTCTTGCGCAATCTACTCATATAAAGGCTACCTCTTATCGC
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* *
32034124 AGTTGCGACTCGAATTTGAATGCAAATTCGACCAAATATCGTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
32034167 TCAAATTATTTATTTCGCATAACGTAAATAAC-AGATGAGTTACACGACGTGGAGAAAATGCAAC
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGA-ATGAGTTACACCACGTGGAGAAAATGCAAC
** *
32034231 TAAAAAAA-ATTGGATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAGGAGGTCACCC
65 TAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * * *
32034295 ATCCTAGTACTACTCTCGCCCATGCACGCTTAACAGCGGAGTTCTGATGAGATCCGGTGCATTAA
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* *
32034360 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGC
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* * *
32034425 CCTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACTTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * * *
32034468 TCAAATTATTTATTTCGCAAAACGCATATAACGAATTAGTTACAACACGTGGAGAAATTGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * * *
32034533 AAAAGAAACT-TTATTTGAAATAAAATGGGAGCGGTGCAACACGTGGACTTCCGAAGAGGTCACC
66 AAAA-AAA-TATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* * * *
32034597 CATCCTAGTACTACTCTCGCCCAAGCTCGCTTAACTGAGGAGTTCTGATGGAATCCGGTGTATTA
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
** * * * * *
32034662 GCACTAGTATGATCGCACCCGTCAACTCTT-CTACAATCTATTTATATAAAGACCGCCCCTTATC
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGC-GCAATCTATTCATATAAAGGCTGCCCCTTATC
** * * *
32034726 GCACTTTTGCCTCGAATTTTAATGCAAATTCTACCAAATAACGTT
258 GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
32034771 TCAAATTATTTATTTCGAAAAACGCAAATAACGAATTAGCTACACCACGTGGAGAAAATGCAAC-
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * *
32034835 AAAAAAACCT-TTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCCAAAGAGGTCACC
66 AAAAAAA--TATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* * * * * * * * *
32034899 CATACTAGTACTAATCTCACCAAAGCACGCTAAATTGCGGAGTTCTAATGAGATCCGGTGCATTT
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
* * * * * *
32034964 GTTCTGGTATGATCGCACCTGTCAACTTTTGCGTAATCTATTTATATAAAGGCTGGCCCTTATCG
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
*
32035029 CACTTGCGCCTCGAATTTTAATGCAAATTCG-CCAAATATCGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * * *
32035072 TCAGATTATTAATTTCGCAAAACGCAAATAACGAATGAGTTACACCATGTGTAGAAAATGCAATT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
*
32035137 AAAAAAA-ATTATATTAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
** ** * *
32035201 TCCTAGTACTACTCTCG-CCAAGCACGCTTTCCT-TAGAGTTCTGGTGCGATCCGGTGCATTAGT
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
32035264 GCTGGTATGATCGCATCCGTCAACT-TATGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
196 GCTGGTATGATCGCACCCGTCAACTCT-TGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
*
32035328 ACTTGCGCCTCGAATTTGAATGAAAATTCGACCAAATATCGTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * * *
32035371 TCAAATTAATTATTTTGGAAAACGCAAATAACGAATGAGTTACACCAAGTGGAGATAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
*
32035436 AAAAAAATATTATATGAACTAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * * *
32035501 TCCTAGTACAACTCTCGCCCAAGCACGCTTGACTGTGGAGTTCTGATGGGATCCGGTGCATCAGT
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* * * *
32035566 GATTGTATGATCGTACCCGTCAACTCATGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
196 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
32035631 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * ** * * *
32035673 TCAAATTATTTATTTTGGAAAACGCAAATAACAAATGAGTTACATTAGGTGGAGATAATGCAACC
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
*
32035738 AAAAAAATATTATATGAAATAAAACGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* *** * * *
32035803 TCCTAGTACAACTCTCGCGTGAGCACGCTTAACTGTGGAGTTCTGATGGGATTCGGTGCATCAGT
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* * * *
32035868 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTGTTCATATATAGGCTGCCTCTTATAGCA
196 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* *
32035933 CTTGCGCCTCGAATTTCAATGCAAATTCGACCAAATATCTTT
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
32035975 TCAAATTATTTATTTCGGAAAACGCAAATAACGAATGAGCTACACCACGTGAAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
*
32036040 AAAAAAA-A-TATTATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCT
66 AAAAAAATATTA-TATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * * * *
32036103 ATCCTAGTACTACTCTCGCCCATGCACGCTTAACAGCGGAGTTCTAATGAGATCCGGTGCATTAA
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* * ** *
32036168 TGCTAGTATGATCGAACCCGTTTACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGC
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* * * *
32036233 CCTTCCGCCTCGAATTTGAATGCAAATTCGACCAAATAACTTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * * *
32036276 TCAAATTATTTATTTCGCAAAACGCATATAACGAATTAGTTACAACACGTGGAGAAATTGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * * *
32036341 AAAAGAAACT-TTATTTGAAATAAAATGGGAGCGGTGCAACACGTGGACTTCCGAAGAGGTCACC
66 AAAA-AAA-TATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* * * * * *
32036405 CATCCTAGTACTACTCTCGCCTAAGCTCGCTTAACTGAGGAGTTCTGATGGAATCCTGTGTATTA
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
** * * * *
32036470 GCACTAGTATGATCGCACCCGTCAACTCTT-CTGCAATCTATTTATATAAAGACCGCCCCTTATC
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGC-GCAATCTATTCATATAAAGGCTGCCCCTTATC
** * * * *
32036534 GCACTTTTGCCTCGAATTTTAATTCAAATTCTACCAAATAACGTT
258 GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
32036579 TCAAATTATTTATTTCAG-AAATCGCAAATAACGAATTAGCTACACCACGTGGAGAAAATGCAAC
1 TCAAATTATTTATTTC-GCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAAC
* * * * *
32036643 TAAAAAAACT-TTATGA-GAAATAAAATGGGCGGGGTGCAACATGAGGACTTCCAAAGAGGTGAC
65 TAAAAAAA-TATTAT-ATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
* * * ** * * * *
32036706 CCATACTAGTACTAATCTCACAAAAGCACGCTAAATTGCGGAGTTCTAATGAGATCCGGTGCATT
128 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATT
* ** * * * * *
32036771 TGTTTTGGTATGATCGCACCTGTCAACTTTTGCGTAATCTATTTATATAAAGGCTGGCCCTTATC
193 AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATC
*
32036836 GCACTTGCGCCTCGAATTTTAATGCAAATTCG-CCAAATATCGTT
258 GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
32036880 TCAGATTATTAATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* ** * *
32036945 AAAAAAAACATTATATGAAATAAAATGGGAGGTTTGTAACACGAGGACTTCCCAGGAGATCACCC
66 -AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * * * ** *
32037010 ATCCTAGTACTACTCTCGCCCATGCACGCTTAATTCCGGAGTTCTGATGGAAT-CTATTCATATA
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCAT-T-
* * * * * * *
32037074 AATGTTAGTATGATCGCACCCGTCAACTCTTGTGGAATCTATTCATATAAATGTTGCCCCTTATC
193 AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATC
* * * *
32037139 GCAATTGCGCCTTGAATTTGAATGGAAATTCGAACAAATATCGTT
258 GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
** * * *
32037184 TCAAATTATTTATTAAGCAAAACGCAAATAACGAATGAGTTACACCAGGTGAAGAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* *
32037249 AAAAAAATATTATATGAAATAAAATGCGAGGGGTGCAACACAAGGACTTCCCAGGAGGTCACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * *
32037314 TCCTAGTACAACTCTCGCCCAAGCACGCTTAACTGCGTAGTTCTGATGGGATCCGATGCATTAGT
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* * *
32037379 GGTTGTATGATCGTACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
196 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* *
32037444 CTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGTT
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* *
32037486 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCAAGTGGGGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
*
32037551 AAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTGT-CCAAGAGGTCACC
66 -AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACT-TCCCAGGAGGTCACC
* * * * * *
32037615 CATCCTAGTACTACTCTCGCCCAATCACGTTTAACTGCGAAGTTTTAATGGGATCTGGTGCATTA
129 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
* * *
32037680 GTGCTGGTATAATCGCACCCGTCAACTCTTGCGCAATCTGTTCATATAAAGGTTGCCCCTTATCG
194 GTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
*
32037745 CACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATATCGTT
259 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
32037789 TCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAATTACACCACGTGGAGAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAAC-
* * * *
32037854 AAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGATTTCCCAGGAGGTCACCC
65 TAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * * * *
32037919 ATCCTAGTACTAATCTCGCCCAAGCACACTTAACTGCGGAGTTTTGATGGTATCCGATGCATTAG
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* * * * * *
32037984 TGATAGTATAATCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGTTGCCCATTATCGC
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* * **
32038049 AATTGCGCCTCGAATTTGAATGCAAATTCAATAAAATATCGTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * *
32038092 TCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAGTTACACAACGTGAAGAAAATGCAAC-
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * *
32038156 AAAAAAA-ATTATCTGAAATAAAATGGGAGGTGTGCAACACGAGGACTTCCCAAGAGGTCGCCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * * * * *
32038220 TCCTAGTATTACTCTTGCCCAAGCGCGCTTAACTGCGGCGTTTTGATGGGATCCGGTGCATTAGA
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* *
32038285 GCTGGTATGATCACACCCGTCAACCCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
196 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
** * * *
32038350 CTTGCAACTCGAATTTTAACGCAAATTCGACCAAATATCATT
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* *
32038392 TCAAATTATTTATTTCGCAAAATGCAAATAACGAATGAGTTGCACCACG-GGAAGAAAATGCAAC
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGG-AGAAAATGCAAC
** * *
32038456 T-AAAAAA-ATTATATGAAATAAAATAAGAGGGGTGCAACACGAGGACATCCAAGGAGGTCACCC
65 TAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * *
32038519 ATCCTAGTACTACTCTCGCCCAAGCACGCTTACCTGCGGAGTTCTGATGGGATCCAGTGGATTAG
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
*
32038584 TGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* *
32038649 ACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGGTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATA-TCGTT
* * * *
32038693 T-AAGTTAATTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* *
32038757 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTGACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * * * * *
32038822 TCCTAGTACTACTCTCGCCCAATCACGTTTAACTACGAAGTTTTAATGGGATCCGGTGCATTAGT
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* * * *
32038887 GCTGGTATAATCGCACTCGTCAACTCTTGCGCAATCTGTTCATATAAAGGTTGCCCCTTATCGCA
196 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
*
32038952 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATTGGTT
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATA-TCGTT
* * * *
32038995 T-AAGTTAATTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
*
32039059 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTGT-CCAAGAGGTCACCC
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACT-TCCCAGGAGGTCACCC
* * * * * *
32039123 ATCCTAGTACTACTCTCGCCCAATCACGTTTAACTACGAAGTTTTAATGGGATCCGGTGCATTAG
130 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* * * *
32039188 TGCTGGTATAATCGCACTCGTCAACTCTTGCGCAATCTGTTCATATAAAGGTTGCCCCTTATCGC
195 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
*
32039253 ACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATATCGTT
260 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * * *
32039296 TCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAATTACACCACGTGGAGAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * *
32039361 AAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGATTTCCCAGGAGGTCACCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * *
32039426 TCCTAGTACTACTCTCGCCCAAGCACGCTTACCTGCGGAGTTCTGATGGGATCCAGTGGATTAGT
131 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
32039491 GCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
196 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* *
32039556 CTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGGTT
261 CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATA-TCGTT
* * * *
32039599 T-AAGTTAATTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACA
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
32039663 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
66 AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
32039716 CCCGTCAACT
Statistics
Matches: 5191, Mismatches: 611, Indels: 100
0.88 0.10 0.02
Matches are distributed among these distances:
297 1 0.00
298 108 0.02
299 87 0.02
300 654 0.13
301 709 0.14
302 2039 0.39
303 1509 0.29
304 84 0.02
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (302 bp):
TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
CTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
Found at i:32039868 original size:210 final size:209
Alignment explanation
Indices: 32039504--32039924 Score: 684
Period size: 210 Copynumber: 2.0 Consensus size: 209
32039494 AGTATGATCG
32039504 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAA
* * *
32039569 TTTGAATGCAAATTCGACCAAATATTGGTTTAAGTTAATTATTTCGCAAAACGCAAATAACGAAT
66 TTTGAATGCAAATTCGACCAAATATTCGTTCAAATTAATTATTTCGCAAAACGCAAATAACGAAT
*
32039634 GAGTTACACCACGTGGAAAAAATGCAAC-AAAAAAAATATTATATGAAATAAAATGGGAGGGGTG
131 GAGTTACACCACGTGGAAAAAATGCAACTAAAAAAAA-A-TATATGAAATAAAATAGGAGGGGTG
32039698 CAACACGAGGACTTCC
194 CAACACGAGGACTTCC
* ** *
32039714 CACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGTTTGCCCCTTATCGCACTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAA
* * *
32039779 TTTGAATGCAAATTCGACCAAATA-TCGTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAA
66 TTTGAATGCAAATTCGACCAAATATTCGTT-CAAATTAATTATTTCGCAAAACGCAAATAACGAA
* *
32039843 TGAGTTACACCATGTGGAGAAAATGCAACTAAAAAAAAATATATGAAATAAAATAGGAGGGGTGC
130 TGAGTTACACCACGTGGAAAAAATGCAACTAAAAAAAAATATATGAAATAAAATAGGAGGGGTGC
32039908 AACACGAGGACTTCC
195 AACACGAGGACTTCC
32039923 CA
1 CA
32039925 GGAGGTCACC
Statistics
Matches: 196, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
209 46 0.23
210 142 0.72
211 8 0.04
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (209 bp):
CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAA
TTTGAATGCAAATTCGACCAAATATTCGTTCAAATTAATTATTTCGCAAAACGCAAATAACGAAT
GAGTTACACCACGTGGAAAAAATGCAACTAAAAAAAAATATATGAAATAAAATAGGAGGGGTGCA
ACACGAGGACTTCC
Found at i:32040213 original size:512 final size:512
Alignment explanation
Indices: 32039206--32040225 Score: 1690
Period size: 511 Copynumber: 2.0 Consensus size: 512
32039196 TAATCGCACT
*
32039206 CGTCAACTCTTGCGCAATCTGTTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
1 CGTCAACTCTTGCGCAATCTATTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
* *
32039271 AATTCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAAT
66 AATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAAT
32039336 TACACCACGTGGAGAAAATGCAACAAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACA
131 TACACCACGTGGAGAAAATGCAACAAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACA
* * * *
32039401 CGAGGATTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTACCTGCGGAG
196 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAC
* *
32039466 TTCTGATGGGATCCAGTGGATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATT
261 TTCTGATGGGATCCAGTGCATTAGTGCTAGTATAATCGCACCCGTCAACTCTTGCGCAATCTATT
* *
32039531 CATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTG
326 CATATAAAGGCTGCCCCTTATCGCAATTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTC
* * *
32039596 GTTTAAGTTAATTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAA
391 GTTTAAATTAATTATTTCGCAAAACGCAAATAACAAATGAGTTACACCACGTGGAAAAAATGAAA
32039661 CAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCACC
456 CAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCACC
* *
32039718 CGTCAACTCTTGCGCAATCTATTCATTTAAAGTTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
1 CGTCAACTCTTGCGCAATCTATTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
*
32039783 AATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAGT
66 AATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAAT
*
32039848 TACACCATGTGGAGAAAATGCAACTAAAAAAAA-A-TATATGAAATAAAATAGGAGGGGTGCAAC
131 TACACCACGTGGAGAAAATGCAAC-AAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAAC
32039911 ACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGA
195 ACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGA
* * * *
32039976 CTTTTGATGGTATCC-GATGCATTAGTGCTAGTATAATCGCATCCGTCAACTCTTGTGCAATCTA
260 CTTCTGATGGGATCCAG-TGCATTAGTGCTAGTATAATCGCACCCGTCAACTCTTGCGCAATCTA
* ** *
32040040 TTCATATAAAGGTTGCCCCTTATCGCAATTGTGCCTCGAATTTGAATGCAAATTCGGCCAAATA-
324 TTCATATAAAGGCTGCCCCTTATCGCAATTGCACCTCGAATTTGAATGCAAATTCGACCAAATAT
* *
32040104 TCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAGTTACACTACGT-GAAGAAAAT
389 TCGTTT-AAATTAATTATTTCGCAAAACGCAAATAACAAATGAGTTACACCACGTGGAA-AAAAT
* *
32040168 GAAACTAAAAAAAATATTATCTGAAATAAATTGGGAGGGGTGCAACACGAGGACTTCC
452 GAAAC-AAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
32040226 TAAGAGGTAA
Statistics
Matches: 473, Mismatches: 30, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
510 9 0.02
511 258 0.55
512 198 0.42
513 8 0.02
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (512 bp):
CGTCAACTCTTGCGCAATCTATTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
AATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAAT
TACACCACGTGGAGAAAATGCAACAAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACA
CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAC
TTCTGATGGGATCCAGTGCATTAGTGCTAGTATAATCGCACCCGTCAACTCTTGCGCAATCTATT
CATATAAAGGCTGCCCCTTATCGCAATTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTC
GTTTAAATTAATTATTTCGCAAAACGCAAATAACAAATGAGTTACACCACGTGGAAAAAATGAAA
CAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCACC
Found at i:32040352 original size:303 final size:302
Alignment explanation
Indices: 32039714--32042308 Score: 3406
Period size: 301 Copynumber: 8.6 Consensus size: 302
32039704 GAGGACTTCC
* **
32039714 CACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGTTTGCCCCTTATCGCACTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
* * *
32039779 TTTGAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAAT
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
* *
32039844 GAGTTACACCATGTGGAGAAAATGCAACTAAAAAAAA-A-TATATGAAATAAAATAGGAGGGGTG
131 GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTG
*
32039907 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
196 CAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
* * * * * *
32039972 CAGACTTTTGATGGTATCCGATGCATTAGTGCTAGTATAATCG
261 CGGAGTTCTGATGG-ATCCGGTGCATTAGTGCTGGTATGATCG
* * * * *
32040015 CATCCGTCAACTCTTGTGCAATCTATTCATATAAAGGTTGCCCCTTATCGCAATTGTGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
* *
32040080 TTTGAATGCAAATTCGGCCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACAAAT
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
* * * * *
32040145 GAGTTACACTACGTGAAGAAAATGAAACTAAAAAAAATATTATCTGAAATAAATTGGGAGGGGTG
131 GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTG
* * * *
32040210 CAACACGAGGACTTCCTAAGAGGTAACCCATCCTAGTTCTACTCTCGCCCAAGCATGCTTAACTG
196 CAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
* * *
32040275 CGAAGTTTTAATAGGATCCGGTGCATTAGTGCTGGTATGATCG
261 CGGAGTTCTGAT-GGATCCGGTGCATTAGTGCTGGTATGATCG
* *
32040318 CACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
** * * *
32040383 TTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
* * *
32040448 TAGTTACACCACGTGGAGAAATTGCAACTAAAAAAAACT-TTATATGAAATAAAATGGGAGCGGT
131 GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAA-TATTATATGAAATAAAATGGGAGGGGT
* * * *
32040512 GCAGCACGTGGACTTCCTAGGAGGTCACCCATCGTAGTACTACACTCGCCCAAGCACGCTTAACT
195 GCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* * *
32040577 GCGGAGTTCTGATGGAATCCGGTGTATTAGTTCTAGTATGATCG
260 GCGGAGTTCTGATGG-ATCCGGTGCATTAGTGCTGGTATGATCG
* * * **
32040621 CACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCGCCCCTTATCGCACTTTTGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
* * *
32040686 TTTGAATGCAAATTCTACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGTAAATAACGAAA
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG-AA
* * *
32040751 T-AGTTACACCACGTGGACAAAATGCAACTAAAAAAACT-TTATAAGAAATAAAATGGGAGGGGT
130 TGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGT
* ** * * * * *
32040814 GCAACATGAGGACTTCAAAAGAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATT
195 GCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* * *
32040879 ACGGAGTTCTAATGAGATCCGGTGCATTTGTGCTGGTATGATCG
260 GCGGAGTTCTGATG-GATCCGGTGCATTAGTGCTGGTATGATCG
* * * * * *
32040923 TACCCATCAACTTTTGCGCTAAATTGCGGAGTTCTAATGAGTTCTAAATTGCTGACCCTTATCGC
1 CACCCGTCAACTCTTGCGC--AA-T-C-TA-TTC--AT-A----TAAA-GGCTGCCCCTTATCGC
* * * *
32040988 ACTTGCGCCTTGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTAAATTT-TCAAA
52 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT-TATTTCGCAAA
* * *
32041052 ACGCAAATAACG-CTAAGTTACACCACGTGGAGAAAATACAACT--AAAAAATATTATATGAAAT
116 ACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAAT
* *
32041114 TAAATGGGAGGGGTGCAACACGACGACTT-CTCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
181 AAAATGGGAGGGGTGCAACACGAGGACTTCCT-AGGAGGTCACCCATCCTAGTACTACTCTCGCC
* *
32041178 CAAACACGCTTAACTGCGGAGTTCTGATTGGATTCGGTGCATTAGTGCTGGTATGATCG
245 CAAGCACGCTTAACTGCGGAGTTCTGA-TGGATCCGGTGCATTAGTGCTGGTATGATCG
* * * *
32041237 CACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCTCTGATCGCAGTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
* * * * * *
32041302 TTTGAATGCAAATTCGACCAAATATCGTTTCATAGTATTTATTTCACATAACTCAAATAACGATT
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
*
32041367 GAGTTACACCACGTGGGGAAAATGCAACT--AAAAAATATTATATGAAATAAAATGGGAGGGGTG
131 GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTG
*
32041430 CAACACGAGGACTT-CTCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAACACGCTTAACT
196 CAACACGAGGACTTCCT-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* *
32041494 GCGGAGTTTTGATTGGATTCGGTGCATTAGTGCTGGTATGATCG
260 GCGGAGTTCTGA-TGGATCCGGTGCATTAGTGCTGGTATGATCG
* * * *
32041538 CACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTACCTCTTATCGCAGTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
* * * * *
32041603 TTTGAATGCAAATTCAACCAAATATCATTTCAAATTATTTATTTCGCATAACGCAAAGAACGAAC
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
*
32041668 GAGTTACACCATGTGGAGAAAATGCAACTAATAAAAAATATTATATGAAATAAAATGGGAGGGGT
131 GAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAATGGGAGGGGT
* * * * *
32041733 GCAACACGAGGACATCCCAAGAGGCCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTTAACT
195 GCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* **
32041798 GAGGAGTTCTGATGGGATCCACTGCATTAGTGCTGGTATGATCG
260 GCGGAGTTCTGAT-GGATCCGGTGCATTAGTGCTGGTATGATCG
* * * *
32041842 CA-CCGATCAACTCTTGCGCAATCTATTCATATAAATGCTGCCTCTTATCGCACTTGTGCCTCAA
1 CACCCG-TCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGA
* * *
32041906 ATTTTAATGCAAATTCAACCAAATATCGATTCAAATTATTTATTTCGCAAAACGCAAATAACGAA
65 ATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAA
*** * *
32041971 TGAGTTACACGTTGTGAAGAAAATGCAACT-AAAAAAA-ATTATATGAAATAAATTGGGAGGGGT
130 TGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGT
* * * * *
32042034 GCAACACAAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCATGGACGCTTAACA
195 GCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* * * * ** *
32042099 GC-GAGTTCTGATGAGATCTGGTGCAGTAATGATATTACGATCG
260 GCGGAGTTCTGATG-GATCCGGTGCATTAGTGCTGGTATGATCG
* *
32042142 CACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
** * * *
32042207 TTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
* * *
32042272 TATTTACACCACGTGGAGAAATTGCAACTAAAAAAAA
131 GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAA
32042309 CTGCGGAGGT
Statistics
Matches: 2017, Mismatches: 240, Indels: 74
0.87 0.10 0.03
Matches are distributed among these distances:
299 5 0.00
300 238 0.12
301 561 0.28
302 139 0.07
303 532 0.26
304 275 0.14
305 3 0.00
306 3 0.00
307 1 0.00
308 5 0.00
309 1 0.00
310 3 0.00
311 2 0.00
312 2 0.00
313 6 0.00
314 130 0.06
315 32 0.02
316 75 0.04
317 4 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (302 bp):
CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTG
CAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
CGGAGTTCTGATGGATCCGGTGCATTAGTGCTGGTATGATCG
Found at i:32040483 original size:814 final size:813
Alignment explanation
Indices: 32038904--32040528 Score: 2483
Period size: 814 Copynumber: 2.0 Consensus size: 813
32038894 TAATCGCACT
*
32038904 CGTCAACTCTTGCGCAATCTGTTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
1 CGTCAACTCTTGCGCAATCTATTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
* * *
32038969 AATGCAAATTCGACCAAATATTGGTTTAAGTTAATTATTTCGCAAAACGCAAATAACGAATGAGT
66 AATGCAAATTCGACCAAATATTCGTTCAAATTAATTATTTCGCAAAACGCAAATAACGAATGAGT
*
32039034 TACACCACGTGGAAAAAATGCAACAAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACA
131 TACACCACGTGGAAAAAATGCAACAAAAAAAATATTATATGAAATAAAATAGGAGGGGTGCAACA
* * *
32039099 CGAGGACTGTCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAATCACGTTTAACTACGAAG
196 CGAGGACTGTCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGAAC
* * *
32039164 TTTTAATGGGATCCGGTGCATTAGTGCTGGTATAATCGCACTCGTCAACTCTTGCGCAATCTGTT
261 TTTTAATGGGATCCGATGCATTAGTGCTAGTATAATCGCACTCGTCAACTCTTGCGCAATCTATT
* *
32039229 CATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATATCG
326 CATATAAAGGTTGCCCCTTATCGCAATTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCG
* ** * *
32039294 TTTCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAATTACACCACGTGGAGAAAATGCAA
391 TTTCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAATTACACCACGTGAAGAAAATGAAA
* * *
32039359 CAAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGATTTCCCAGGAGGTCACC
456 CAAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTAACC
* * * * *
32039424 CATCCTAGTACTACTCTCGCCCAAGCACGCTTACCTGCGGAGTTCTGATGGGATCCAGTGGATTA
521 CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAATAGGATCCAGTGCATTA
32039489 GTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
586 GTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
* *
32039554 CACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGGTTTAAGTTAATTATTTCGCAAA
651 CACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATT-GTTCAAATTAATTATTTCGCAAA
32039619 ACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACAAAAAAAATA-TTATATGAAAT
715 ACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACAAAAAAAA-ACTTATATGAAAT
*
32039683 AAAATGGGAGGGGTGCAACACGAGGACTTCCCACC
779 AAAATGGGAGCGGTGCAACACGAGGACTTCCCACC
* *
32039718 CGTCAACTCTTGCGCAATCTATTCATTTAAAGTTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
1 CGTCAACTCTTGCGCAATCTATTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
* * *
32039783 AATGCAAATTCGACCAAATA-TCGTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAATGAG
66 AATGCAAATTCGACCAAATATTCGTT-CAAATTAATTATTTCGCAAAACGCAAATAACGAATGAG
* *
32039847 TTACACCATGTGGAGAAAATGCAACTAAAAAAAA-A-TATATGAAATAAAATAGGAGGGGTGCAA
130 TTACACCACGTGGAAAAAATGCAAC-AAAAAAAATATTATATGAAATAAAATAGGAGGGGTGCAA
* *
32039910 CACGAGGACT-TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC-
194 CACGAGGACTGT-CCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACG
* * *
32039973 AGACTTTTGATGGTATCCGATGCATTAGTGCTAGTATAATCGCA-TCCGTCAACTCTTGTGCAAT
258 A-ACTTTTAATGGGATCCGATGCATTAGTGCTAGTATAATCGCACT-CGTCAACTCTTGCGCAAT
* *
32040037 CTATTCATATAAAGGTTGCCCCTTATCGCAATTGTGCCTCGAATTTGAATGCAAATTCGGCCAAA
321 CTATTCATATAAAGGTTGCCCCTTATCGCAATTGCGCCTCGAATTTGAATGCAAATTCGACCAAA
* *
32040102 TATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAGTTACACTACGTGAAGAAAA
386 TATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAATTACACCACGTGAAGAAAA
* * * * *
32040167 TGAAACTAAAAAAAATATTATCTGAAATAAATTGGGAGGGGTGCAACACGAGGACTTCCTAAGAG
451 TGAAAC-AAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAG
* * * *
32040232 GTAACCCATCCTAGTTCTACTCTCGCCCAAGCATGCTTAACTGCGAAGTTTTAATAGGATCCGGT
515 GTAACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAATAGGATCCAGT
* *
32040297 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCC
580 GCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCC
* * ** *
32040362 TTATCGCCCTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACTT-TTCAAATTATTTATT
645 TTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAAT-A-TTGTTCAAATTAATTATT
* * * * *
32040426 TCGCAAAACGCAAATAAGGAATTAGTTACACCACGTGGAGAAATTGCAACTAAAAAAAACTTTAT
708 TCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACAAAAAAAAAC-TTAT
* *
32040491 ATGAAATAAAATGGGAGCGGTGCAGCACGTGGACTTCC
772 ATGAAATAAAATGGGAGCGGTGCAACACGAGGACTTCC
32040529 TAGGAGGTCA
Statistics
Matches: 733, Mismatches: 68, Indels: 19
0.89 0.08 0.02
Matches are distributed among these distances:
812 3 0.00
813 267 0.36
814 413 0.56
815 48 0.07
816 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (813 bp):
CGTCAACTCTTGCGCAATCTATTCATATAAAGGTTGCCCCTTATCGCACTTGCGCCTCGAATTTG
AATGCAAATTCGACCAAATATTCGTTCAAATTAATTATTTCGCAAAACGCAAATAACGAATGAGT
TACACCACGTGGAAAAAATGCAACAAAAAAAATATTATATGAAATAAAATAGGAGGGGTGCAACA
CGAGGACTGTCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGAAC
TTTTAATGGGATCCGATGCATTAGTGCTAGTATAATCGCACTCGTCAACTCTTGCGCAATCTATT
CATATAAAGGTTGCCCCTTATCGCAATTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCG
TTTCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAATTACACCACGTGAAGAAAATGAAA
CAAAAAAAACATTATATGAAATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTAACC
CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGAAGTTCTAATAGGATCCAGTGCATTA
GTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCG
CACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATTGTTCAAATTAATTATTTCGCAAAA
CGCAAATAACGAATGAGTTACACCACGTGGAAAAAATGCAACAAAAAAAAACTTATATGAAATAA
AATGGGAGCGGTGCAACACGAGGACTTCCCACC
Found at i:32041866 original size:605 final size:604
Alignment explanation
Indices: 32039714--32042308 Score: 3415
Period size: 605 Copynumber: 4.3 Consensus size: 604
32039704 GAGGACTTCC
* **
32039714 CACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGTTTGCCCCTTATCGCACTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
* *
32039779 TTTGAATGCAAATTCGACCAAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAAGGAAT
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
* *
32039844 GAGTTACACCATGTGGAGAAAATGCAACTAAAAAAAA-A-TATATGAAATAAAATAGGAGGGGTG
131 GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTG
32039907 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
196 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
* * * * * *
32039972 CA-GACTTTTGATGGTATCC-GATGCATTAGTGCTAGTATAATCGCATCCGTCAACTCTTGTGCA
261 -AGGAGTTCTGATGGGATCCAG-TGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCA
* * *
32040035 ATCTATTCATATAAAGGTTGCCCCTTATCGCAATTGTGCCTCGAATTTGAATGCAAATTCGGCCA
324 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCA
* *
32040100 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACAAATGAGTTACACTACGTGAAGAA
389 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGAAGAA
* * *
32040165 AATGAAACTAAAAAAAATATTATCTGAAATAAATTGGGAGGGGTGCAACACGAGGACTTCCTAAG
454 AATGCAACT--AAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC-AAG
* * * * * * *
32040230 AGGTAACCCATCCTAGTTCTACTCTCGCCCAAGCATGCTTAACTGCGAAGTTTTAATAG-GATCC
516 AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATTGAGATCC
32040294 GGTGCATTAGTGCTGGTATGATCG
581 GGTGCATTAGTGCTGGTATGATCG
* *
32040318 CACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
** * *
32040383 TTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
* * *
32040448 TAGTTACACCACGTGGAGAAATTGCAACTAAAAAAAACT-TTATATGAAATAAAATGGGAGCGGT
131 GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAA-TATTATATGAAATAAAATGGGAGGGGT
* * * * *
32040512 GCAGCACGTGGACTTCCTAGGAGGTCACCCATCGTAGTACTACACTCGCCCAAGCACGCTTAACT
195 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* * * * * *
32040577 GCGGAGTTCTGATGGAATCCGGTGTATTAGTTCTAGTATGATCGCACCCGTCAACTCTTGTGCAA
260 GAGGAGTTCTGATGGGATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAA
* * * *
32040642 TCTATTTATATAAAGGCCGCCCCTTATCGCACTTTTGCCTCGAATTTGAATGCAAATTCTACCAA
325 TCTATTCATATAAAGGCTGCCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCAA
* * * *
32040707 ATAACGTTTCAAATTATTTATTTCGCAAAACGTAAATAACGAAAT-AGTTACACCACGTGGACAA
390 ATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGAAGAA
* * *
32040771 AATGCAACTAAAAAA-ACTTTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAAAG
454 AATGCAACTAAAAAATA--TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTC-CAAG
* * * * * *
32040835 AGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTACGGAGTTCT-AATGAGATCC
516 AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATTGAGATCC
*
32040899 GGTGCATTTGTGCTGGTATGATCG
581 GGTGCATTAGTGCTGGTATGATCG
* * * * * *
32040923 TACCCATCAACTTTTGCGCTAAATTGCGGAGTTCTAATGAGTTCTAAATTGCTGACCCTTATCGC
1 CACCCGTCAACTCTTGCGC--AA-T-C-TA-TTC--AT-A----TAAA-GGCTGCCCCTTATCGC
* * * *
32040988 ACTTGCGCCTTGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTAAATTT-TCAAA
52 ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT-TATTTCGCAAA
* * * *
32041052 ACGCAAATAACG-CTAAGTTACACCACGTGGAGAAAATACAACT--AAAAAATATTATATGAAAT
116 ACGCAAATAAGGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAAT
* * *
32041114 TAAATGGGAGGGGTGCAACACGACGACTTCTCAGGAGGTCACCCATCCTAGTACTACTCTCGCCC
181 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * * * *
32041179 AAACACGCTTAACTGCGGAGTTCTGATTGGATTCGGTGCATTAGTGCTGGTATGATCGCACCCGT
246 AAGCACGCTTAACTGAGGAGTTCTGATGGGATCCAGTGCATTAGTGCTAGTATGATCGCACCCGT
* * * * *
32041244 CAACTCTTGCACAATCTATTCATATAAAGGCTGCCTCTGATCGCAGTTGCGCCTCGAATTTGAAT
311 CAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGTGCCTCGAATTTGAAT
* * * * * *
32041309 GCAAATTCGACCAAATATCGTTTCATAGTATTTATTTCACATAACTCAAATAACGATTGAGTTAC
376 GCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTAC
**
32041374 ACCACGTGGGGAAAATGCAACTAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAG
441 ACCACGTGAAGAAAATGCAACTAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAG
* * *
32041439 GACTTCTCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTTT
506 GACTTC-CAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
*
32041504 GATTG-GATTCGGTGCATTAGTGCTGGTATGATCG
570 GATTGAGATCCGGTGCATTAGTGCTGGTATGATCG
* * * *
32041538 CACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTACCTCTTATCGCAGTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
* * * * * *
32041603 TTTGAATGCAAATTCAACCAAATATCATTTCAAATTATTTATTTCGCATAACGCAAAGAACGAAC
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
*
32041668 GAGTTACACCATGTGGAGAAAATGCAACTAATAAAAAATATTATATGAAATAAAATGGGAGGGGT
131 GAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAATGGGAGGGGT
* * * *
32041733 GCAACACGAGGACATCCCAAGAGGCCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTTAACT
195 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* *
32041798 GAGGAGTTCTGATGGGATCCACTGCATTAGTGCTGGTATGATCGCA-CCGATCAACTCTTGCGCA
260 GAGGAGTTCTGATGGGATCCAGTGCATTAGTGCTAGTATGATCGCACCCG-TCAACTCTTGCGCA
* * * * *
32041862 ATCTATTCATATAAATGCTGCCTCTTATCGCACTTGTGCCTCAAATTTTAATGCAAATTCAACCA
324 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCA
* ***
32041927 AATATCGATTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACGTTGTGAAGAA
389 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGAAGAA
* * * *
32041992 AATGCAACTAAAAAAAATTATATGAAATAAATTGGGAGGGGTGCAACACAAGGACTTCCCAGGAG
454 AATGCAACTAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTT-CCAAGAG
* * * *
32042057 GTCACCCATCCTAGTACTACTCTCGCCCATGGACGCTTAACAGC-GAGTTCTGA-TGAGATCTGG
518 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATTGAGATCCGG
* * * ** *
32042120 TGCAGTAATGATATTACGATCG
583 TGCATTAGTGCTGGTATGATCG
* *
32042142 CACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTCGAA
1 CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
** * *
32042207 TTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
66 TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
* * *
32042272 TATTTACACCACGTGGAGAAATTGCAACTAAAAAAAA
131 GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAA
32042309 CTGCGGAGGT
Statistics
Matches: 1730, Mismatches: 224, Indels: 75
0.85 0.11 0.04
Matches are distributed among these distances:
600 4 0.00
601 74 0.04
602 30 0.02
603 9 0.01
604 335 0.19
605 483 0.28
606 258 0.15
607 8 0.00
608 1 0.00
609 4 0.00
610 2 0.00
611 3 0.00
612 1 0.00
613 4 0.00
614 1 0.00
615 133 0.08
616 269 0.16
617 1 0.00
618 31 0.02
619 75 0.04
620 4 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (604 bp):
CACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAGGAAT
GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGGTG
CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTG
AGGAGTTCTGATGGGATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAAT
CTATTCATATAAAGGCTGCCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAA
TATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGAAGAAAA
TGCAACTAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAAGAGGTC
ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATTGAGATCCGGTGC
ATTAGTGCTGGTATGATCG
Found at i:32043023 original size:285 final size:288
Alignment explanation
Indices: 32042314--32043360 Score: 1092
Period size: 301 Copynumber: 3.5 Consensus size: 288
32042304 AAAAACTGCG
* ** * * *
32042314 GAGGTCACCCATCGTAGTACTACAGTAGCCCAAGCACGCTTGACTGCGGAGTTCTGATG-GAATC
1 GAGGTCACCCATCGTAGTACAACTCTCGCCCAAGCACGCTTAACTGAGGAGTTCTGATGAG-ATC
* * * * * * *
32042378 CGGTGTATTAGTACTAGTACGATCGCACCCCTCAACTCTTGTGCAATCTATTTATATAAAGGCCG
65 CGGTGCATTAGTGCTGGTATGATCGCA-CCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG
* ** * *
32042443 CCCCTTATCGCACTTTTGCCTCGAATTTGACTGCAAATTCTACCAAATAACGTTTCAAATT-TTT
129 -CCCTTATCCCACTTGCGCCTCGAATTTGAATGCAAA-T-T-----ATATCG--T-AAATTATTT
* * * *
32042507 ATTTTGCAAAACGTAAATAATGAAAT-AGTTACACCACGTGG-AGAAAATGCAACTAAAAAAACT
183 ATTTAGCAAAACGCAAATAACG-AATGAGTTACACCACG-GGAAGAAAATGCAATTAAAAAAA--
* * **
32042570 TTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAAA
244 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * * *
32042615 GAGGTCACCCATCGTAGTACTAA-TCTCGCCCAAGCACGC-TAAATTACGGAGTTCTAATTAGAT
1 GAGGTCACCCATCGTAGTAC-AACTCTCGCCCAAGCACGCTTAACTGA-GGAGTTCTGATGAGAT
* *
32042678 CCGGTGCATTTGTGCTGGTATGATCGCACCTGTCAACTTTTGCGCAATCTATTTATATAAAGGCT
64 CCGGTGCATTAGTGCTGGTATGATCGCACC-GTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* *
32042743 GACCCTTATCCCACTTGCGCCTTGAATTTTAATGCAAA-T-T-T-G-AAATTATTTATTTAGCAA
128 G-CCCTTATCCCACTTGCGCCTCGAATTTGAATGCAAATTATATCGTAAATTATTTATTTAGCAA
*
32042803 AATGCAAATAACGAATGAGTTACACCACGGGAAGAAAATGCAATTAAAAAAATTATATGAAATAA
192 AACGCAAATAACGAATGAGTTACACCACGGGAAGAAAATGCAATTAAAAAAATTATATGAAATAA
*
32042868 AATGGGAGGGGTGCAACACGAGGACATCCCAA
257 AATGGGAGGGGTGCAACACGAGGACTTCCCAA
* *
32042900 GAGGTCACCCATCGTAGTACAACTCTCGCCCAAGCACGCTTAACTGAGTAGTTCTGATGGGATCC
1 GAGGTCACCCATCGTAGTACAACTCTCGCCCAAGCACGCTTAACTGAGGAGTTCTGATGAGATCC
* *
32042965 AGTGCATTAGTGCTGGTATGATCGCACCGATCAACTCTTGCGCAATCTATTGATATAAAGGCTGC
66 GGTGCATTAGTGCTGGTATGATCGCACCG-TCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
* **
32043030 CTCTTATCGCACTTGTACCTCGAATTTGAATGCAAATTCAACCAAATATCGATTCAAATTATTTA
130 C-CTTATCCCACTTGCGCCTCGAATTTGAATGCAAATT-------ATATCG--T-AAATTATTTA
* *** * *
32043095 TTTCGCAAAACGCAAATAACGAATGAGTTACACGTTGTGAAGAAAATGCAACTAAAAAAAATTAT
184 TTTAGCAAAACGCAAATAACGAATGAGTTACACCACGGGAAGAAAATGCAA-TTAAAAAAATTAT
* * *
32043160 ATGAAATAAATTGGGAGGGGTGCAACAGGAGGACTTCCCAG
248 ATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * * * * * * *
32043201 GAGGTCACCCATCCTAGTACTACTCTCCCCCATGGACGCTTAACAGCGGAGTTCTGATGAGATCT
1 GAGGTCACCCATCGTAGTACAACTCTCGCCCAAGCACGCTTAACTGAGGAGTTCTGATGAGATCC
* * * *
32043266 GGTGCAGTAATGCTGTTACGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGC
66 GGTGCATTAGTGCTGGTATGATCGCA-CCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTG-
*
32043331 CCCTTATCGCC-CTTACGCCTCGAATTTGAA
129 CCCTTATC-CCACTTGCGCCTCGAATTTGAA
32043361 ATTAAATTCG
Statistics
Matches: 633, Mismatches: 83, Indels: 60
0.82 0.11 0.08
Matches are distributed among these distances:
284 5 0.01
285 177 0.28
286 16 0.03
287 52 0.08
290 1 0.00
292 1 0.00
294 1 0.00
295 1 0.00
296 1 0.00
298 1 0.00
300 60 0.09
301 309 0.49
302 8 0.01
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (288 bp):
GAGGTCACCCATCGTAGTACAACTCTCGCCCAAGCACGCTTAACTGAGGAGTTCTGATGAGATCC
GGTGCATTAGTGCTGGTATGATCGCACCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCC
CTTATCCCACTTGCGCCTCGAATTTGAATGCAAATTATATCGTAAATTATTTATTTAGCAAAACG
CAAATAACGAATGAGTTACACCACGGGAAGAAAATGCAATTAAAAAAATTATATGAAATAAAATG
GGAGGGGTGCAACACGAGGACTTCCCAA
Found at i:32043326 original size:301 final size:301
Alignment explanation
Indices: 32042785--32043456 Score: 918
Period size: 301 Copynumber: 2.2 Consensus size: 301
32042775 TGCAAATTTG
* * * *
32042785 AAATTATTTATTTAGCAAAATGCAAATAACGAATGAGTTACACCACGGGAAGAAAATGCAA-TTA
1 AAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAACTAA
*
32042849 AAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACATCCCAAGAGGTCACCCATCG
66 AAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACATCCCAAGAGGTCACCCATCC
* * * * * *
32042914 TAGTACAACTCTCGCCCAAGCACGCTTAACTGAGTAGTTCTGATGGGATCCAGTGCATTAGTGCT
131 TAGTACAACTCTCCCCCAAGCACGCTTAACAGAGGAGTTCTGATGAGATCCAGTGCAGTAATGCT
* *
32042979 GGTATGATCGCACCGATCAACTCTTGCGCAATCTATTGATATAAAGGCTGCCTCTTATCGCACTT
196 GGTACGATCGCACCGATCAACTCTTGCGCAATCTATTGATATAAAGGCTGCCCCTTATCGCACTT
** *
32043044 GTACCTCGAATTTG-AATGCAAATTCAACCAAATATCGATTC
261 ACACCTCGAATTTGAAAT-CAAATTCAACCAAATAACGATTC
***
32043085 AAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACGTTGTGAAGAAAATGCAACTAA
1 AAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAACTAA
* * * *
32043150 AAAAAATTATATGAAATAAATTGGGAGGGGTGCAACAGGAGGACTTCCCAGGAGGTCACCCATCC
66 AAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACATCCCAAGAGGTCACCCATCC
* * * * **
32043215 TAGTACTACTCTCCCCCATGGACGCTTAACAGCGGAGTTCTGATGAGATCTGGTGCAGTAATGCT
131 TAGTACAACTCTCCCCCAAGCACGCTTAACAGAGGAGTTCTGATGAGATCCAGTGCAGTAATGCT
* * *
32043280 GTTACGATCGCACCCG-TCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCT
196 GGTACGATCGCA-CCGATCAACTCTTGCGCAATCTATTGATATAAAGGCTGCCCCTTATCGCACT
* * * **
32043344 TACGCCTCGAATTTGAAATTAAATTCGACCAAATAACTTTTC
260 TACACCTCGAATTTGAAATCAAATTCAACCAAATAACGATTC
* * * * * *
32043386 AAATTATTTATTTCGCAAAACACAAATAAGGAATTATTTACACCACGTGGAGAAATTGCAACTAA
1 AAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAACTAA
32043451 AAAAAA
66 AAAAAA
32043457 CTGCGGAGGT
Statistics
Matches: 323, Mismatches: 46, Indels: 5
0.86 0.12 0.01
Matches are distributed among these distances:
300 55 0.17
301 262 0.81
302 6 0.02
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (301 bp):
AAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAACTAA
AAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACATCCCAAGAGGTCACCCATCC
TAGTACAACTCTCCCCCAAGCACGCTTAACAGAGGAGTTCTGATGAGATCCAGTGCAGTAATGCT
GGTACGATCGCACCGATCAACTCTTGCGCAATCTATTGATATAAAGGCTGCCCCTTATCGCACTT
ACACCTCGAATTTGAAATCAAATTCAACCAAATAACGATTC
Found at i:32043976 original size:562 final size:562
Alignment explanation
Indices: 32041753--32045647 Score: 2698
Period size: 601 Copynumber: 6.7 Consensus size: 562
32041743 GACATCCCAA
* * * * * *
32041753 GAGGCCACCCATCCTAGTACAACTCTCGCCCAAGCACGCTTAACTGA-GGAGTTCTGATGGGATC
1 GAGGTCACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAACT-ACGGAGTTCTGATGGAATC
** * * * * * * *
32041817 CACTGCATTAGTGCTGGTATGATCGCA-CCGATCAACTCTTGCGCAATCTATTCATATAAATGCT
65 CGGTGTATTAGTACTAGTACGATCGCACCCG-TCAACTCTTGTGCAATCTATTCATATAAAGGCA
* * * * *
32041881 GCCTCTTATCGCACTTGTGCCTCAAATTTTAATGCAAATTCAACCAAATATCGATTCAAATTATT
129 GCCCCTTATCGCACTTTTGCCTCGAATTTGAATGCAAATTCAACCAAATATCGTTTCAAATTATT
*** * *
32041946 TATTTCGCAAAACGCAAATAACGAATGAGTTACACGTTGTGAAGAAAATGCAACTAAAAAAAATT
194 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTT
* *
32042011 ATATGAAATAAATTGGGAGGGGTGCAACACAAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
259 ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
* * * * * * * ** *
32042076 CTCTCGCCCATGGACGCTTAACAGC-GAGTTCTGATGAGA-TCTGGTGCAGTAATGATATTACGA
324 CTCTCGCCCAAGCACGCTAAACTGCGGAGTTCTGATGAGATTC-GGTGCATTAGTGCTGGTATGA
*
32042139 TCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCTTGCGCCTC
388 TCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTC
** * * *
32042204 GAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAACGCAAATAAGG
453 GAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG
* * *
32042269 AATTATTTACACCACGTGGAGAAATTGCAACTAAAAAAAACTGCG
518 AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACTGCG
* * *
32042314 GAGGTCACCCATCGTAGTACTACAGTAGCCCAAGCACGCTTGACTGCGGAGTTCTGATGGAATCC
1 GAGGTCACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAACTACGGAGTTCTGATGGAATCC
* * *
32042379 GGTGTATTAGTACTAGTACGATCGCACCCCTCAACTCTTGTGCAATCTATTTATATAAAGGCCGC
66 GGTGTATTAGTACTAGTACGATCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCAGC
* * *
32042444 CCCTTATCGCACTTTTGCCTCGAATTTGACTGCAAATTCTACCAAATAACGTTTCAAATT-TTTA
131 CCCTTATCGCACTTTTGCCTCGAATTTGAATGCAAATTCAACCAAATATCGTTTCAAATTATTTA
* * *
32042508 TTTTGCAAAACGTAAATAATGAAAT-AGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTT
196 TTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TTT
* * ** * *
32042572 ATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAAAGAGGTCACCCATCGTAGTACTA
259 ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
* * * * * * *
32042637 ATCTCGCCCAAGCACGCTAAATTACGGAGTTCTAATTAGATCCGGTGCATTTGTGCTGGTATGAT
324 CTCTCGCCCAAGCACGCTAAACTGCGGAGTTCTGATGAGATTCGGTGCATTAGTGCTGGTATGAT
* * * * *
32042702 CGCACCTGTCAACTTTTGCGCAATCTATTTATATAAAGGCTGACCCTTATCCCACTTGCGCCTTG
389 CGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCG
* * *
32042767 AATTT---T---AA-T-G--C-AA-A---TTTGAAATTATTTATTTAGCAAAATGCAAATAACGA
454 AATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* **
32042817 ATGAGTTACACCACG-GGAAGAAAATGCAATTAAAAAAATTA-T-AT
519 ATGAGTTACACCACGTGG-AGAAAATGCAACTAAAAAAA--ACTGCG
** ** * * * * * * * * * *
32042861 GAAAT-A-AAATGGGAGGGGTGCAACACGAGGACATCCCAAG-A-GGTCACCCATCGTAGTACAA
1 GAGGTCACCCATCGTA---GTACTACACTA-G----CCCAAGCACGCTTAACTA-CGGAGT----
*** * * * * * * * * *
32042922 CTCTCG-CCCAAGCACGCT-TA--ACTGAGTAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTA
53 -TCT-GATGGAATC-CGGTGTATTAGT-ACTAGTAC-GATCGCA-CCCGT-CA--A---CT-CT-
* * *** * *** *
32042983 TGATCGC-ACCGA-TCA-ACTCTTGCGCAATCTATTGATATAAAGGCTGC-CTCTTATCGCACTT
104 TG-T-GCAATCTATTCATA-TAAAG-GC-AGCCCCT--TAT-----C-GCACT-TT-T-GC-CTC
** * *
32043044 GTACCTCGAATTTGAATGCAAATTCAACCAAATATCGATTCAAATTATTTATTTCGCAAAACGCA
152 G-AATTTGAA------TGCAAATTCAACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCA
*** * * *
32043109 AATAACGAATGAGTTACACGTTGTGAAGAAAATGCAACTAAAAAAAATTATATGAAATAAATTGG
210 AATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATATGAAATAAAATGG
* * * *
32043174 GAGGGGTGCAACAGGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCCCCCATGGACG
275 GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * * * *
32043239 CTTAACAGCGGAGTTCTGATGAGA-TCTGGTGCAGTAATGCTGTTACGATCGCACCCGTCAACTC
340 CTAAACTGCGGAGTTCTGATGAGATTC-GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * *
32043303 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCCTTACGCCTCGAATTTGAAAT-TAAA
404 TTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTG-AATGCAAA
* * * * * *
32043367 TTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAACACAAATAAGGAATTATTTACACCAC
468 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCAC
*
32043432 GTGGAGAAATTGCAACTAAAAAAAACTGCG
533 GTGGAGAAAATGCAACTAAAAAAAACTGCG
32043462 GAGGTCACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAACTACGGAGTTCTGATGGAATCC
1 GAGGTCACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAACTACGGAGTTCTGATGGAATCC
* *
32043527 GGTGTATTAGTACTAGTACGATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCCGC
66 GGTGTATTAGTACTAGTACGATCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCAGC
* * *
32043592 CCCTTATCGCACTTTTGCCTCGAATTTGACTGCAAATTCTACCAAATAACGTTTCAAATT-TTTA
131 CCCTTATCGCACTTTTGCCTCGAATTTGAATGCAAATTCAACCAAATATCGTTTCAAATTATTTA
* * *
32043656 TTTTGCAAAACGTAAATAATGAAAT-AGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTT
196 TTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TTT
* * ** * *
32043720 ATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAAAGAGGTCACCCATCGTAGTACTA
259 ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
* * * * * *
32043785 ATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATTAGATTCGGTGTATTTGTGCTGGTATGAT
324 CTCTCGCCCAAGCACGCTAAACTGCGGAGTTCTGATGAGATTCGGTGCATTAGTGCTGGTATGAT
* ** *
32043850 CGCACCCGTCAACTTTTGCGCAATCTATTTATATAAAGGCTAACCCTTATCGCACTTGCGCCTTG
389 CGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCG
* * *
32043915 AATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTAAATTTTG-AAAACGCAAATAACG
454 AATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT-TATTTCGCAAAACGCAAATAACG
* * *
32043979 AATGAGTTACGCCACGTGGAGAAAACGCAACTAAAAAAATATTATATGAAATAAACTGG
518 AATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAA-A--A-CTG-------C--G
* * * *
32044038 GAGGGGTGCAACACGAGGACTTCTCAGGAGGTCACCCATCCTACTACTCTCGCCCAAACACGCTT
1 GA--GGT-C-AC-C-----C--ATC-GTA-GT-----A--CTAC-A--CTAGCCCAAGCACGCTT
* * * * * *
32044103 AACTGCGGAGTTCTGAT-GAGATTCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTG
42 AACTACGGAGTTCTGATGGA-ATCCGGTGTATTAGTACTAGTACGATCGCACCCGTCAACTCTTG
** * * ***
32044167 CACAATCTATTCATATAAAGGCTAG-CTCTTATCGCAGTTGCACCTCGAATTTGAATGCAAATTC
106 TGCAATCTATTCATATAAAGGC-AGCCCCTTATCGCACTTTTGCCTCGAATTTGAATGCAAATTC
* * *
32044231 GACCAAATATCGTTTCATATTATTTATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTG
170 AACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTG
* * *
32044296 GGGAAAGTGCAACTAAAAAAATATTATATGAAATAAAATGGGAGGGGTGTAACACGAGGACTTCC
235 GAGAAAATGCAACTAAAAAAAT-TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * *
32044361 CAGGAGGTCACCCATCCTAGTACTACTCTAGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGA
299 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTAAACTGCGGAGTTCTGATGAGA
* * ** * * ** * *
32044426 TCCGATGCATTAGTGCAAGTATGATCGCACCCGTCAACTCTTGTGCAAGCTATTCGTATAAATGT
364 TTCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * * * *
32044491 TACCCCTTATTGCATTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTAAAATTAT
429 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTAT
* ***
32044556 TTATTTCGCAAAACACAAATAACGAATGAGTTACACGTTGT-GATGAAAATGCAACTAAAAAAAA
494 TTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGA-GAAAATGCAACT-AAAAAAA
* *
32044620 TTATATGAAATAAATTGG
557 --A-CTG---------CG
* * * ** * *
32044638 GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC-CCATCCTAGTACTACTCTCGCCCATGGAC
1 GA--GGT-C-AC-C-----CAT--C-GTA-GT-ACTACA--CTAG--C--C-CAAG--CACGC--
* * * * * *
32044702 GCTTAAC-AGCGGAGTTCTGAT-GAGATCTGGTGCATTAATGCT-GTTATGATCGCACCCGCCAA
40 --TTAACTA-CGGAGTTCTGATGGA-ATCCGGTGTATTAGTACTAG-TACGATCGCACCCGTCAA
* * * * *
32044764 CTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGC-C-CTTGCATCTCGAATTTGAATT
100 CTCTTGTGCAATCTATTCATATAAAGGCAGCCCCTTATCGCACTTTTGC--CTCGAATTTGAATG
* * * * * * *
32044827 TAAATTCGACCAAATAACTTTTCAAATTAGTTATTTCGCAAAACGCAAATAACGAATTAGTTTCA
163 CAAATTCAACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACA
* ** *
32044892 CCACGTGGAGAAATTGCAACTAAAAAAAACTTTATATGAAATAAAATGGGAGACGTGCAACACGT
228 CCACGTGGAGAAAATGCAACT-AAAAAAA-TTTATATGAAATAAAATGGGAGGGGTGCAACACGA
* * * * * * * * **
32044957 GGACTTCCCAAGAGGTCACCCATCTTAGTATTACTCTTGCCCAAGCATGGTTAACTACAAAGTTC
291 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTAAACTGCGGAGTTC
* ** * * * * *
32045022 TGATG-GAATCTGGTGTTTTAGTACTAGTATGATCGCACCCGTCAACTCGTGTGCAATTTATTTA
356 TGATGAGATTC-GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTA
* * ** * * *
32045086 TATAAAGGCCGCCCCTTATCGGACTTTTGCCTCGAATTTGAATGCAAATTCTAACAAATAACGTT
420 TATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTT
* * ** *
32045151 TCAAATTATTTATTTCACAAAATGCAAATAACGAATTTGTTACACCACGTAGAGAAAATGCAACT
485 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATG---C-
* *
32045216 AAAAAAACTTTATAAGAAATAAAATGGGAAGGG
546 -----AAC----TAA-AAA-AAACT-----GCG
* * * * * *
32045249 TGCAACATTAGGACTTCCAAAGAGGTGACCCATCCTAATACTACTCTCGCCCATGGACGCTTAAC
1 -G-------AGG---T-C---------ACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAAC
* * * * * * *
32045314 -AGTGGAGTTCTGAT-GAGATCTGGTGCAGTAATGCT-GTTACGATCGCACCCGTCAACTCTTGC
45 TA-CGGAGTTCTGATGGA-ATCCGGTGTATTAGTACTAG-TACGATCGCACCCGTCAACTCTTGT
* * * ** * *
32045376 GCAATCTATTTATATAAAGGCTGACCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGA
107 GCAATCTATTCATATAAAGGCAGCCCCTTATCGCACTTTTGCCTCGAATTTGAATGCAAATTCAA
* * * * * * * *
32045441 TCGAATATCGTTCCAGATTATTTATTTCACAAAACGAAAATAACGAATGAGTTACACCATGTCGA
172 CCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGA
* * *
32045506 GAAAATGCAACTAAAAAAAACATTCTATGAAATAAAATGGGAGGGGTGCAACACGAGAACTTCCC
237 GAAAATGCAACT-AAAAAAA-TTTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* * *
32045571 AGGAGGTCACCCATCCTACTACTACTCTCGCCCAAGCACGCTTAAA-AGCGGAGTTCTGATGGGA
300 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC-TAAACTGCGGAGTTCTGATGAGA
*
32045635 TCCGGTGCATTAG
364 TTCGGTGCATTAG
32045648 NNNNNNNNNN
Statistics
Matches: 2633, Mismatches: 490, Indels: 378
0.75 0.14 0.11
Matches are distributed among these distances:
545 4 0.00
546 3 0.00
547 66 0.03
548 8 0.00
549 2 0.00
550 1 0.00
551 5 0.00
552 7 0.00
553 6 0.00
554 1 0.00
555 3 0.00
556 8 0.00
557 13 0.00
558 7 0.00
559 3 0.00
560 53 0.02
561 295 0.11
562 362 0.14
563 14 0.01
564 3 0.00
565 2 0.00
566 7 0.00
567 8 0.00
568 8 0.00
569 3 0.00
570 5 0.00
571 1 0.00
572 4 0.00
573 3 0.00
574 1 0.00
575 3 0.00
576 7 0.00
577 1 0.00
578 8 0.00
579 4 0.00
580 10 0.00
581 7 0.00
582 6 0.00
583 2 0.00
584 2 0.00
585 1 0.00
586 201 0.08
587 54 0.02
588 2 0.00
589 4 0.00
590 11 0.00
591 13 0.00
592 12 0.00
593 4 0.00
594 3 0.00
595 7 0.00
596 10 0.00
597 12 0.00
598 3 0.00
599 7 0.00
600 197 0.07
601 370 0.14
602 8 0.00
603 183 0.07
604 240 0.09
605 282 0.11
606 7 0.00
607 3 0.00
609 2 0.00
611 4 0.00
612 2 0.00
613 3 0.00
614 1 0.00
615 2 0.00
616 6 0.00
617 8 0.00
618 4 0.00
619 2 0.00
620 4 0.00
622 2 0.00
627 1 0.00
628 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (562 bp):
GAGGTCACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAACTACGGAGTTCTGATGGAATCC
GGTGTATTAGTACTAGTACGATCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCAGC
CCCTTATCGCACTTTTGCCTCGAATTTGAATGCAAATTCAACCAAATATCGTTTCAAATTATTTA
TTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTAT
ATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
CTCGCCCAAGCACGCTAAACTGCGGAGTTCTGATGAGATTCGGTGCATTAGTGCTGGTATGATCG
CACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
GAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACTGCG
Found at i:32044558 original size:302 final size:302
Alignment explanation
Indices: 32043461--32045647 Score: 2714
Period size: 302 Copynumber: 7.3 Consensus size: 302
32043451 AAAAAACTGC
* * * *
32043461 GGAGGTCACCCATCGTAGTACTACACTAGCCCAAGCACGCTTAACTACGGAGTTCTGATG-GAAT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAG-AT
* * * * *
32043525 CCGGTGTATTAGTACTAGTACGATCGCACCCGTCAACTCTTGTGCAATCTATTTATATAAAGGCC
65 CCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* ** * * *
32043590 GCCCCTTATCGCACTTTTGCCTCGAATTTGACTGCAAATTCTACCAAATAACGTTTCAAATT-TT
130 ACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT
* * *
32043654 TATTTTGCAAAACGTAAATAATGAAAT-AGTTACACCACGTGGAGAAAATGCAACTAAAAAAACT
195 TATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-T
* * **
32043718 -TTATAAGAAATAAAATGGGAGGGGTGCAACATGAGGACTTCAAA
258 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * * * *
32043762 AGAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTAATTAGATT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * * *
32043827 CGGTGTATTTGTGCTGGTATGATCGCACCCGTCAACTTTTGCGCAATCTATTTATATAAAGGCTA
66 CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTA
* * *
32043892 ACCCTTATCGCACTTGCGCCTTGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTA
131 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT-
* * * *
32043957 AATTTTG-AAAACGCAAATAACGAATGAGTTACGCCACGTGGAGAAAACGCAACTAAAAAAATAT
195 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATAT
* *
32044021 TATATGAAATAAACTGGGAGGGGTGCAACACGAGGACTTCTCA
260 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* *
32044064 GGAGGTCACCCATCC---TACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTCTGATGAGATT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * *
32044126 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTA
66 CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTA
* * * * *
32044191 GCTCTTATCGCAGTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCATATTATTT
131 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* * *
32044256 ATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTGGGGAAAGTGCAACTAAAAAAATATT
196 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATT
*
32044321 ATATGAAATAAAATGGGAGGGGTGTAACACGAGGACTTCCCA
261 ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * *
32044363 GGAGGTCACCCATCCTAGTACTACTCTAGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATC
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * * * ** * *
32044428 CGATGCATTAGTGCAAGTATGATCGCACCCGTCAACTCTTGTGCAAGCTATTCGTATAAATGTTA
66 CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTA
* * * *
32044493 CCCCTTATTGCATTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTAAAATTATTT
131 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* ***
32044558 ATTTCGCAAAACACAAATAACGAATGAGTTACACGTTGT-GATGAAAATGCAACTAAAAAAA-AT
196 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGA-GAAAATGCAACTAAAAAAATAT
*
32044621 TATATGAAATAAATTGGGAGGGGTGCAACACGAGGACTTCCCA
260 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * *
32044664 GGAGGTCACCCATCCTAGTACTACTCTCGCCCATGGACGCTTAACAGCGGAGTTCTGATGAGATC
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * *
32044729 TGGTGCATTAATGCT-GTTATGATCGCACCCGCCAACTCTTGCGCAATCTATTTATATAAAGGCT
66 CGGTGCATTAGTGCTAG-TATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* * ** ** * * *
32044793 GCCCCTTATCGCCCTTGCATCTCGAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTAGT
130 ACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT
* * *
32044858 TATTTCGCAAAACGCAAATAACGAATTAGTTTCACCACGTGGAGAAATTGCAACTAAAAAAA-AC
195 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATA-
** *
32044922 TTTATATGAAATAAAATGGGAGACGTGCAACACGTGGACTTCCCA
259 -TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * * * **
32044967 AGAGGTCACCCATCTTAGTATTACTCTTGCCCAAGCATGGTTAACTACAAAGTTCTGATG-GAAT
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAG-AT
* ** * * * * *
32045031 CTGGTGTTTTAGTACTAGTATGATCGCACCCGTCAACTCGTGTGCAATTTATTTATATAAAGGCC
65 CCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* * ** * * *
32045096 GCCCCTTATCGGACTTTTGCCTCGAATTTGAATGCAAATTCTAACAAATAACGTTTCAAATTATT
130 ACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT
* * ** *
32045161 TATTTCACAAAATGCAAATAACGAATTTGTTACACCACGTAGAGAAAATGCAACTAAAAAAACT-
195 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TA
* * ** *
32045225 TTATAAGAAATAAAATGGGAAGGGTGCAACATTAGGACTTCCAA
259 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * * *
32045269 AGAGGTGACCCATCCTAATACTACTCTCGCCCATGGACGCTTAACAGTGGAGTTCTGATGAGATC
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
* * * *
32045334 TGGTGCAGTAATGCT-GTTACGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
66 CGGTGCATTAGTGCTAG-TATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* * * * *
32045398 GA-CCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGATCGAATATCGTTCCAGATTAT
130 -ACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTAT
* * * * *
32045462 TTATTTCACAAAACGAAAATAACGAATGAGTTACACCATGTCGAGAAAATGCAACTAAAAAAAAC
194 TTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAAT
* *
32045527 ATTCTATGAAATAAAATGGGAGGGGTGCAACACGAGAACTTCCCA
258 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* ** *
32045572 GGAGGTCACCCATCCTACTACTACTCTCGCCCAAGCACGCTTAAAAGCGGAGTTCTGATGGGATC
1 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
32045637 CGGTGCATTAG
66 CGGTGCATTAG
32045648 NNNNNNNNNN
Statistics
Matches: 1619, Mismatches: 244, Indels: 44
0.85 0.13 0.02
Matches are distributed among these distances:
298 5 0.00
299 265 0.16
300 1 0.00
301 428 0.26
302 550 0.34
303 369 0.23
304 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (302 bp):
GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGAGATC
CGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTA
CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATT
ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
Found at i:32050109 original size:302 final size:301
Alignment explanation
Indices: 32045869--32050106 Score: 4359
Period size: 302 Copynumber: 14.1 Consensus size: 301
32045859 NNNNNNNNNG
* * * ** *
32045869 TTGCACCTTGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTACTAAATTT-TCAAAAC
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTA-TTTATTTCGCAAAAC
*
32045933 GCAAATAACGAATGAGTTACACCACGTGGAGAAAACGCAACTAAAAAAATATTATATGAAATAAA
65 GCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAT-TTATATGAAATAAA
*
32045998 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
129 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAG
*
32046063 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAA
194 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
*
32046128 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCCTTATCGCAG
259 CTCTTGCGCAATCTATTCATATAAAGGCTG-CCCCTTATCGCAC
* * * * * * *
32046172 TTGCGCCTCAAATTTAAATGCAAATTCGACCGAATATCGTTCCAAATTGTCTATTTCACAAAACG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * *
32046237 CAAATAACGAATGATTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAA
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAA-TTTATATGAAATAAA
* * * * *
32046302 ATGGGAGGGGTCCAACACGAGGACTTCCCAGGAGGGCACCCAACCTAGTACTACTCTCGCCGAAG
129 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAG
* * *** *
32046367 CACGCTGAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCAATTATGATCACACCCGTCAA
194 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * * *
32046432 CTCTTGTGCAAGCTATTCATATAAATGTTGCCCCTTATCGCAT
259 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * * *
32046475 TTGCGCCTCGAATTTGAATGCAAATTCAACCAAATATCATTGCAAATTATTTATTTCGCAAAATG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * * * *
32046540 AAAATAACGAAAGAGTTACACCACGTGAAGAAAATGTAATTAAAAAAA-TTATATGAAATAAAAT
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATATGAAATAAAAT
* * *
32046604 GGGAGGGGTGCAACACGAGGACATCCCAAGAGGCCACCCATCCTAGTAC-AACTCTCGCCCAAGC
131 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAA-TCTCGCCCAAGC
* **
32046668 ACGCTTAACTGAGGAGTTCTGATGGGATCCACTGCATTAGTGCTGGTATGATCGCA-CCGATCAA
195 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG-TCAA
* *
32046732 CTCTTGCGCAATCTATTCATATAAATGCTGCCTCTTATCGCAC
259 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * * * * *
32046775 TTGTGCCTCAAATTTTAATGCAAATTAGACCAAATATCGATTCAAATTATTTATTTCGCAAAATG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * * *
32046840 CAAATAAGGAATTAGTTACACCACGAGGAGAAATTGCAACTAAAAAAAACTTTATATGAAATAAA
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAA-TTTATATGAAATAAA
* * * *
32046905 ATGGGA-TGGTGCAACACGTGGACTTCCTAGGAGGTCACCCATCGTAGTACTACA-CTCGCCCAA
129 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA-ATCTCGCCCAA
* **
32046968 GCACGCTTAACTGAGGAGTTCTGATGGGATCCACTGCATTAGTGCTGGTATGATCGCA-CCGATC
193 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG-TC
* ** *
32047032 AACTCTTGCGCAATCTATTTATATAAATACTGCCCCTTATCGCCC
257 AACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
** * * *
32047077 TTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAATG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * * *
32047142 CAAATAAGGAATTAGTTACACCACGAGGAGAAATTGCAACTAAAAAAAACTTTATATGAAATAAA
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAA-TTTATATGAAATAAA
* * * *
32047207 ATGGGA-TGGTGCAACACGTGGACTTCCTAGGAGGTCACCCATCGTAGTACTACA-CTCGCCCAA
129 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA-ATCTCGCCCAA
* * * * * * *
32047270 GCACGCTTAAATGCGGAGTTCCGATGGAATCCGGTGTATTAGTACTAGTAGGATCGCACCCGTCA
193 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
* ** * *
32047335 ACTCTTGTGCAATCTATTTGTATAAAGCCCGCCCCTTATCGCAC
258 ACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
** * *
32047379 TTTTGCCTCGAATTTGAATGCAAATTCTACCAAATAACGTTTCAAATTATTTATTTCGCAAAACG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * *
32047444 TAAATAACAAAAT-AGTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTTATAAGAAATAAA
66 CAAATAAC-GAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TTTATATGAAATAAA
* ** * *
32047508 ATGGGAGGGGTGCAACATGAGGACTTCAAAAGAGGTCACCCATCGTAGTACTAATCTCGCCCAAG
129 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAG
* * * * ** * *
32047573 CACGCTAAATTACGGAGTTCTAATTAGATCCGGTGCATTTGTGCTGGTATGATCGCACCTGTCAA
194 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * *
32047638 CTTTTGCGCAATCTATTTATATAAAGGCTGACCCTTATCCCAC
259 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * * * *
32047681 TTGCGCCTTGAATTTTAATGCAAATTTGACCAAATATCGTTTCAAATTATTAAATTT-TCAAAAC
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT-TATTTCGCAAAAC
**
32047745 GCAAATAACGAATGAGTTACACCACGTGGAGAAAACACAACTAAAAAAATATTATATGAAATAAA
65 GCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAT-TTATATGAAATAAA
* * * * *
32047810 CTTGGAGGGGTGCAACACGAGGACTTCTCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAA
129 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAG
* * * * *
32047875 CAGGCTTAACTGCGGATTTCTGATGGGATTCAGTGCATTAGTGCTGGTATGATCACACCCGTCAA
194 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
** * * * *
32047940 CTCTTGAACAATCTATTCATATAAAGGCTACCTCTTATTGCAG
259 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * *
32047983 TTGCGGCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCATATTATTTATTTCGCAAAATG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * * * *
32048048 AAAATAACGAAAGAGTTACACCACGTGAAGAAAATGTAATTAAAAAAA-TTATATGAAATAAAAT
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATATGAAATAAAAT
* * *
32048112 GGAAGAGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTAC-AACTCTCGCCCAAGC
131 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAA-TCTCGCCCAAGC
* * *
32048176 ACGCTTAACTGAGGAGTTCTGATGGGATCCAGTGCATTAGTTCTGGTATGATCGCA-CCGATCAA
195 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG-TCAA
**
32048240 CTCTTGCGCAATCTATTCATATAAAGGCTGCTTCTTATCGCAC
259 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * *
32048283 TTGTGCCTCGAATTT-AATGCAAATTCAACCAAATATCGATTCAAATTATTTATTTCGCAAAACG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
*** * *
32048347 CAAATAACGAATGAGTTACACGTTGTGAAGAAAATGCAACTAAAAAAA-TTATATGAAATAAATT
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATATGAAATAAAAT
* * *
32048411 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAACCTAGTACTACTCTCGCCGAAGCA
131 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCA
* * *** *
32048476 CGCTGAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCAATTATGATCACACCCGTCAACT
196 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * * *
32048541 CTTGTGCAAGCTATTCATATAAATGTTGCCCCTTATCGCAT
261 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * *
32048582 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTGCAAATTATTTATTTCGCAAAATG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
*
32048647 CAAATAACGAATGAGTTACACCACG-GGAAGAAAATGCAATTAAAAAAA-TTATATGAAATAAAA
66 CAAATAACGAATGAGTTACACCACGTGG-AGAAAATGCAACTAAAAAAATTTATATGAAATAAAA
* * *
32048710 TGGAAGAGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTAC-AACTCTCGCCCAAG
130 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAA-TCTCGCCCAAG
* * *
32048774 CACGCTTAACTGAGGAGTTCTGATGGGATCCAGTGCATTAGTTCTGGTATGATCGCA-CCGATCA
194 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG-TCA
**
32048838 ACTCTTGCGCAATCTATTCATATAAAGGCTGCTTCTTATCGCAC
258 ACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * * *
32048882 TTGTGCCTCGAATTT-AATGCAAATTCAACCAAATATCGATTCAAATTATTTATTTCGGAAAACG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
*** *
32048946 CAAATAACGAATGAGTTACACGTTGTGAAGAAAATGCAACTAAAAAAA-TTATATGAAAT-AAAT
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATATGAAATAAAAT
* *****************************************************
32049009 -----TGG-G--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCA
*****************************************************************
32049066 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
***** * *
32049131 NNNNNGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCC
261 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* *
32049172 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATAACTTTTCAAATTATTTATTTCGCAAAACG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * *
32049237 CAAATAAGGAATGAGTTACACCATGTGGAGAAAATGCAACTAAAAAAAAACATTATATGAAATAA
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT--AAAAAAA-TTTATATGAAATAA
* * * * * *
32049302 AATAGGAGGGGTGCAACACGAGGACTTGCCAAGAGGTCACCCATCCTAGTTCTACTCTCTCCCAA
128 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAA
* * * * * * *
32049367 GCATGCCTAACTACGAAGTT-TCAATAGGATCCGGTGCATTAGTGCTGGTATGATTGCACCCGTC
193 GCACGCTTAACTGCGGAGTTCT-GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * * *
32049431 AACCCTTGTGCAATCTATTTATATAAAGGCTGCCCCTTATCGCCC
257 AACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* ** * * * *
32049476 TTGTGCCTCGAATTTGAATTTAAATTCGACAAAATAACTTTTCAAATTAGTTATTTCGCAAAACG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * *
32049541 CAAATAAGGAATTAGTTACACCACGTGGAGAAATTGCAACTAAAAAAACTTTATATGAAATAAAA
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TTTATATGAAATAAAA
* * * *
32049606 TGGGAGCGGTGCAACACGTGGACTTCCTAGGAGGTCACCCATCGTAGTACTACA-CTCGCCCAAG
130 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA-ATCTCGCCCAAG
* * * *
32049670 CACGCTTAACTGCGGAGTTCTGATGGAATCCGGTGTATTAGTACTAGTATGATCGCACCCGTCAA
194 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * *
32049735 CTCTTGTGCAATCTATTTATACAAAGGCCGCCCCTTATCGCAC
259 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
** * * *
32049778 TTTTGCCTCGAATTTGAATGCAAATTCTACCAAATAACGTTTCAAATTATTTATTTCGAAAAACG
1 TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
* * *
32049843 CAAATAACGAATTAGCTACACCACGTGGAGAAAATGCAAC-AAAAAAACCTTTATAAGAAATAAA
66 CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA--TTTATATGAAATAAA
* * * * * *
32049907 ATGGGAGGGGTGCAACATGAGGACTTCCAAAGAGGTCACCCATACTAGTACTAATCTCACCAAAG
129 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAG
* * * * * * *
32049972 CACGCTAAATTGCGGAGTTCTAATGAGATCCGGTGCATTTGTTCTGGTATGATCGCACCTGTCAA
194 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * *
32050037 CTTTTGCGTAATCTATTTATATAAAGGCTGGCCCTTATCGCAC
259 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
*
32050080 TTGCGCCTCGAATTTTAATGCAAATTC
1 TTGCGCCTCGAATTTGAATGCAAATTC
32050107 TACTCTCGCC
Statistics
Matches: 3231, Mismatches: 656, Indels: 97
0.81 0.16 0.02
Matches are distributed among these distances:
290 46 0.01
291 81 0.03
292 1 0.00
293 9 0.00
295 11 0.00
296 4 0.00
298 4 0.00
299 366 0.11
300 686 0.21
301 54 0.02
302 1448 0.45
303 220 0.07
304 301 0.09
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.26
Consensus pattern (301 bp):
TTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACG
CAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATTTATATGAAATAAAAT
GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCA
CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
Found at i:32050239 original size:147 final size:147
Alignment explanation
Indices: 32049972--32050253 Score: 415
Period size: 147 Copynumber: 1.9 Consensus size: 147
32049962 CTCACCAAAG
* * * *
32049972 CACGCTAAATTGCGGAGTTCTAATGAGATCCGGTGCATTTGTTCTGGTATGATCGCACCTGTCAA
1 CACGCTAAACTGCGGAGTTCTAATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* ** * *
32050037 CTTTTGCGTAATCTATTTATATAAAGGCTGGCCCTTATCGCACTTGCGCCTCGAATTTTAATGCA
66 CTCTTGCACAATCTATTCATATAAAGGCTGGCCCTTATCGCACTTGCGCCTCGAATTTGAATGCA
32050102 AATTCTACTCTCGCCAA
131 AATTCTACTCTCGCCAA
* * *
32050119 CACGCTTAACTGCGGAGTTCTGATTG-GATTCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
1 CACGCTAAACTGCGGAGTTCT-AATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
*
32050183 ACTCTTGCACAATCTATTCATATAAAGGCT-GCCTCTTATCGCAGTTGCGCCTCGAATTTGAATG
65 ACTCTTGCACAATCTATTCATATAAAGGCTGGCC-CTTATCGCACTTGCGCCTCGAATTTGAATG
32050247 CAAATTC
129 CAAATTC
32050254 GACCAAATAT
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
146 3 0.03
147 114 0.95
148 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.32
Consensus pattern (147 bp):
CACGCTAAACTGCGGAGTTCTAATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
CTCTTGCACAATCTATTCATATAAAGGCTGGCCCTTATCGCACTTGCGCCTCGAATTTGAATGCA
AATTCTACTCTCGCCAA
Found at i:32050791 original size:300 final size:301
Alignment explanation
Indices: 32050108--32050801 Score: 995
Period size: 301 Copynumber: 2.3 Consensus size: 301
32050098 TGCAAATTCT
* * *
32050108 ACTCTCG-CCAA-CACGCTTAACTGCGGAGTTCTGATTGGATTCGGTGCATTAGTGCTGGTATGA
1 ACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGA
** *
32050171 TCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCTCTTATCGCAGTTGCGCCTC
66 TCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAGTTGCGCCTC
* * *
32050236 GAATTTGAATGCAAATTCGACCAAATATCGTTTCATAGTATTTATTTCACATAACTCAAATAACG
131 GAATTTGAATGCAAATTCGACCAAATATCATTTCAAAGTATTTATTTCACATAAATCAAATAACG
* * *
32050301 ATTGAGTTACACCACGTGGGGAAAATGCAACTAAAAAATATTATATGAAATAAAATGGGAGGGGT
196 AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAATATTATATGAAATAAAATGGGAGAGGT
* * * * *
32050366 GCTACACGAGGATTTCCCAGGAGGTTACCCAACCTAGTACT
261 GCAACACGAGGACTTCCCAAGAGGTCACCCAACCTAGTACA
** * * ***
32050407 ACTCTCGCTGAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCAATGCATTAGTGCAATTATGA
1 ACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGA
* * * *
32050472 TCGCACCCGTCAACTCTTGTGCAAGCTATTCATATAAATGTTGCCCCTTATCGCATTTGCGCCTC
66 TCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAGTTGCGCCTC
* ** *
32050537 GAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTTATTTTGCA-AAATGCCAATAAC
131 GAATTTGAATGCAAATTCGACCAAATATCATTTCAAAGTATTTATTTCACATAAAT-CAAATAAC
*
32050601 GAATGAGTTACACCACG-GGAAGAAAATGCAATTAAAAAA-ATTATATGAAATAAAATGGGAGAG
195 GAATGAGTTACACCACGTGG-AGAAAATGCAACTAAAAAATATTATATGAAATAAAATGGGAGAG
**
32050664 GTGCAACACGAGGACTTCCCAAGAGGTCACCCATTCTAGTACA
259 GTGCAACACGAGGACTTCCCAAGAGGTCACCCAACCTAGTACA
*
32050707 ACTCTCGCCCAAGCACGCTTAACTGAGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGA
1 ACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGA
32050772 TCGCA-CCGATCAACTCTTGTGCAATCTATT
66 TCGCACCCG-TCAACTCTTGTGCAATCTATT
32050802 GAATTTAAAT
Statistics
Matches: 346, Mismatches: 44, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
299 10 0.03
300 148 0.43
301 188 0.54
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (301 bp):
ACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGA
TCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAGTTGCGCCTC
GAATTTGAATGCAAATTCGACCAAATATCATTTCAAAGTATTTATTTCACATAAATCAAATAACG
AATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAATATTATATGAAATAAAATGGGAGAGGT
GCAACACGAGGACTTCCCAAGAGGTCACCCAACCTAGTACA
Found at i:32051033 original size:261 final size:259
Alignment explanation
Indices: 32050549--32051062 Score: 755
Period size: 261 Copynumber: 2.0 Consensus size: 259
32050539 ATTTGAATGC
* * * * * *
32050549 AAATTCGACCAAATATCATTTCAAATTATTTATTTTGCAAAATGCCAATAACGAATGAGTTACAC
1 AAATTCGACAAAATAACATTTCAAATTAGTTATTTCGCAAAACGCAAATAACGAATGAGTTACAC
*
32050614 CACGGGAAGAAAATGCAATTAAAAAAATTATATGAAATAAAATGGGAGAGGTGCAACACGAGGAC
66 CACGGGAAGAAAATGCAACTAAAAAAATTATATGAAATAAAATGGGAGAGGTGCAACACGAGGAC
*
32050679 TTCCCAAGAGGTCACCCATTCTAGTACAACTCTCGCCCAAGCACGCTTAACTGAGGAGTTCTGAT
131 TTCCCAAGAGGTCACCCATTCTAGTACAACACTCGCCCAAGCACGCTTAACTGAGGAGTTCTGAT
* * *
32050744 GGGATCCAGTGCATTAGTGCTGGTATGATCGCA-CCGATCAACTCTTGTGCAATCTATTGAATTT
196 GGAATCCAGTGCATTAGTACTAGTATGATCGCACCCG-TCAACTCTTGTGCAATCTATTGAATTT
* * *
32050808 AAATTCGACAAAATAACTTTTCAAATTAGTTATTTCGCAAAACGCAAATAAGGAATTAGTTACAC
1 AAATTCGACAAAATAACATTTCAAATTAGTTATTTCGCAAAACGCAAATAACGAATGAGTTACAC
* * *
32050873 CACGTGG-AGAAATTGCAACTAAAAAAACTTTATATGAAATAAAATGGGAGCGGTGCAACACGTG
66 CACG-GGAAGAAAATGCAACTAAAAAAA--TTATATGAAATAAAATGGGAGAGGTGCAACACGAG
* * * *
32050937 GACTTCCTAGGAGGTCACCCA-TCGTAGTACTACACTCGCCCAAGCACGCTTAACTGCGGAGTTC
128 GACTTCCCAAGAGGTCACCCATTC-TAGTACAACACTCGCCCAAGCACGCTTAACTGAGGAGTTC
* *
32051001 TGATGGAATCCGGTGTATTAGTACTAGTATGATCGCACCCGTCAACTCTTGTGCAATCTATT
192 TGATGGAATCCAGTGCATTAGTACTAGTATGATCGCACCCGTCAACTCTTGTGCAATCTATT
32051063 TATACAAAGG
Statistics
Matches: 227, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
259 78 0.34
260 4 0.02
261 142 0.63
262 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (259 bp):
AAATTCGACAAAATAACATTTCAAATTAGTTATTTCGCAAAACGCAAATAACGAATGAGTTACAC
CACGGGAAGAAAATGCAACTAAAAAAATTATATGAAATAAAATGGGAGAGGTGCAACACGAGGAC
TTCCCAAGAGGTCACCCATTCTAGTACAACACTCGCCCAAGCACGCTTAACTGAGGAGTTCTGAT
GGAATCCAGTGCATTAGTACTAGTATGATCGCACCCGTCAACTCTTGTGCAATCTATTGAATTT
Found at i:32051364 original size:302 final size:302
Alignment explanation
Indices: 32050808--32051607 Score: 1088
Period size: 302 Copynumber: 2.6 Consensus size: 302
32050798 TATTGAATTT
* * * * *
32050808 AAATTCGACAAAATAACTTTTCAAATTAGTTATTTCGCAAAACGCAAATAAGGAATTAGTTACAC
1 AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAATAGTTACAC
* * *
32050873 CACGTGGAGAAATTGCAACTAAAAAAACTTTATATGAAATAAAATGGGAGCGGTGCAACACGTGG
66 CACGTGGAGAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGGGAGGGGTGCAACACGAGG
*
32050938 ACTTCCTAGGAGGTCACCCATCGTAGTACTACA-CTCGCCCAAGCACGCTTAACTGCGGAGTTCT
131 ACTTCCAAGGAGGTCACCCATCGTAGTACTA-ATCTCGCCCAAGCACGCTTAACTGCGGAGTTCT
* * * **
32051002 GATGGAATCCGGTGTATTAGTACTAGTATGATCGCACCCGTCAACTCTTGTGCAATCTATTTATA
195 AATAGAATCCGGTGCATTAGTACTAGTATGATCGCACCCGTCAACTCTTACGCAATCTATTTATA
* **
32051067 CAAAGGCCGCCCCTTATCGCACTTTTGCCTCGAATTTGAATGC
260 CAAAGGCCGACCCTTATCGCACTTGCGCCTCGAATTTGAATGC
* *
32051110 AAATTCTACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGTAAATAACGAAATAGTTACAC
1 AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAATAGTTACAC
* * *
32051175 CACGTGGACAAAATGCAACTAAAAAAACTTTATAAGAAATAAAATGGGAGGGGTGCAACATGAGG
66 CACGTGGAGAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGGGAGGGGTGCAACACGAGG
* * * *
32051240 ACTTCAAAAGAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTGCGGAGTTCTA
131 ACTTCCAAGGAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTA
* * * *
32051305 ATCAG-ATCCGGTGCATTTGTGCTGGTATGATCGCACCCGTCAACTTTTACGCAATCTATTTATA
196 AT-AGAATCCGGTGCATTAGTACTAGTATGATCGCACCCGTCAACTCTTACGCAATCTATTTATA
* * * *
32051369 TAAAGGCTGACCCTTATCGCACTTGCGCCTTGAATTTTAATGC
260 CAAAGGCCGACCCTTATCGCACTTGCGCCTCGAATTTGAATGC
* *
32051412 AAATTCGACCAAATATCGTTTCAAATTATTAAATTTTCG--AAACGCAAATAACG-AATGAGTTA
1 AAATTCGACCAAATAACGTTTCAAATTATT-TA-TTTCGCAAAACGCAAATAACGAAAT-AGTTA
* * ** *
32051474 CACCACGTGGAGAAAATGCAACTAACAAAAAACATTGTATGAAATAATGTGGGAGGGGTACAACA
63 CACCACGTGGAGAAAATGCAACT-A-AAAAAACTTTATATGAAATAAAATGGGAGGGGTGCAACA
* * * * *
32051539 CGAGGACTTCCCAGGAGGTCACTCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACCGCGGAG
126 CGAGGACTTCCAAGGAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAG
32051604 TTCT
191 TTCT
32051608 GAGGGGATCC
Statistics
Matches: 436, Mismatches: 55, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
301 4 0.01
302 332 0.76
303 3 0.01
304 97 0.22
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (302 bp):
AAATTCGACCAAATAACGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAATAGTTACAC
CACGTGGAGAAAATGCAACTAAAAAAACTTTATATGAAATAAAATGGGAGGGGTGCAACACGAGG
ACTTCCAAGGAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTTAACTGCGGAGTTCTA
ATAGAATCCGGTGCATTAGTACTAGTATGATCGCACCCGTCAACTCTTACGCAATCTATTTATAC
AAAGGCCGACCCTTATCGCACTTGCGCCTCGAATTTGAATGC
Found at i:32051689 original size:86 final size:86
Alignment explanation
Indices: 32051535--32051701 Score: 264
Period size: 86 Copynumber: 1.9 Consensus size: 86
32051525 GGAGGGGTAC
* * *
32051535 AACACGAGGACTTCCCAGGAGGTCACTCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACCGC
1 AACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAACACGCTTAACCAC
32051600 GGAGTTCTGAGGGGATCCAGT
66 GGAGTTCTGAGGGGATCCAGT
* *
32051621 AACATGAGGACTTCTCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAACACGCTT-ACCTA
1 AACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAACACGCTTAACC-A
*
32051685 CGGAGTTCTGATGGGAT
65 CGGAGTTCTGAGGGGAT
32051702 TCGGTGCATT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
85 3 0.04
86 71 0.96
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.22
Consensus pattern (86 bp):
AACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAACACGCTTAACCAC
GGAGTTCTGAGGGGATCCAGT
Found at i:32051950 original size:390 final size:390
Alignment explanation
Indices: 32051231--32051995 Score: 1142
Period size: 390 Copynumber: 2.0 Consensus size: 390
32051221 GGAGGGGTGC
* * * *
32051231 AACATGAGGACTTCAAAAGAGGTCACCCATCGTAGTACTAATCTCGCCCAAGCACGCTAAATTGC
1 AACATGAGGACTTCAAAAGAGGTCACCCATCCTAGTACTAATCTCGCCCAAACACGCTAAACTAC
* * *
32051296 GGAGTTCTAATCAGATCCGGTGCATTTGTGCTGGTATGATCGCACCCGTCAACTTTTACGCAATC
66 GGAGTTCTAATCAGATCCGGTGCATTAGTGCTGGTATGATCACACCCGTCAAATTTTACGCAATC
* * *
32051361 TATTTATATAAAGGCTGACCCTTATCGCACTTGCGCCTTGAATTTTAATGCAAATTCGACCAAAT
131 TATTCATATAAAGGCTGACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAT
* * *
32051426 ATCGTTTCAAATTATTAAATTTTCGAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAAT
196 ATCATTTCAAATTATTAAATTTTCGAAACGCAAAGAACGAACGAGTTACACCACGTGGAGAAAAT
* ** *
32051491 GCAACTAACAAAAAACATTGTATGAAATAATGTGGGAGGGGTACAACACGAGGACTTCCCAGGAG
261 GCAACTAACAAAAAACATTATATGAAATAAAATGGGAGGGGTACAACACGAGGACTTCCAAGGAG
* *
32051556 GTCACTCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACCGCGGAGTTCTGAGGGGATCCAGT
326 GTCACCCATCCTAGTACTACTCTCGCCCAAGAACGCTTAACCGCGGAGTTCTGAGGGGATCCAGT
** * * * *
32051621 AACATGAGGACTTCTCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAACACGCTTACCTAC
1 AACATGAGGACTTCAAAAGAGGTCACCCATCCTAGTACTAATCTCGCCCAAACACGCTAAACTAC
* ** *
32051686 GGAGTTCTGATGGGATTCGGTGCATTAGTGCTGGTATGATCACACCCGTCAAATCTTT-CGCAAT
66 GGAGTTCTAATCAGATCCGGTGCATTAGTGCTGGTATGATCACACCCGTCAAAT-TTTACGCAAT
*
32051750 CTATTCATATAAAGGCT-ACCTCTTATCGCAGTTGCGCCTCGAATTTGAATGCAAATTCGACCAA
130 CTATTCATATAAAGGCTGACC-CTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAA
* *
32051814 ATATCATTTCAAATTATT-TA-TTTCGCATAACGCAAAGAACGAACGAGTTACACCATGTGGAGA
194 ATATCATTTCAAATTATTAAATTTTCG-A-AACGCAAAGAACGAACGAGTTACACCACGTGGAGA
* * *
32051877 AAATGCAACTAATAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCAA
257 AAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAGGGGTACAACACGAGGACTTCCAA
*
32051942 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGAACGCTTAACTGCGGAGTT
322 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGAACGCTTAACCGCGGAGTT
32051996 TTGATGGTAT
Statistics
Matches: 335, Mismatches: 36, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
388 5 0.01
389 5 0.01
390 322 0.96
391 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (390 bp):
AACATGAGGACTTCAAAAGAGGTCACCCATCCTAGTACTAATCTCGCCCAAACACGCTAAACTAC
GGAGTTCTAATCAGATCCGGTGCATTAGTGCTGGTATGATCACACCCGTCAAATTTTACGCAATC
TATTCATATAAAGGCTGACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAT
ATCATTTCAAATTATTAAATTTTCGAAACGCAAAGAACGAACGAGTTACACCACGTGGAGAAAAT
GCAACTAACAAAAAACATTATATGAAATAAAATGGGAGGGGTACAACACGAGGACTTCCAAGGAG
GTCACCCATCCTAGTACTACTCTCGCCCAAGAACGCTTAACCGCGGAGTTCTGAGGGGATCCAGT
Found at i:32052154 original size:169 final size:171
Alignment explanation
Indices: 32051858--32052186 Score: 545
Period size: 169 Copynumber: 1.9 Consensus size: 171
32051848 AAGAACGAAC
* *
32051858 GAGTTACACCATGTGGAGAAAATGCAACTAATAAAAAATATTATATGAAATAAAATGGGAGGGGT
1 GAGTTACACCACGTGAAGAAAATGCAACTAATAAAAAATATTATATGAAATAAAATGGGAGGGGT
*
32051923 GCAACACGAGGACTTCCAAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGAACGCTTAACT
66 GCAACACGAGGACTTCCAAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGAACGCTTAACT
*
32051988 GCGGAGTTTTGATGGTATCCGATGCATTAGTGCTAGTATAT
131 GCGGAGTTTTGATGGGATCCGATGCATTAGTGCTAGTATAT
*
32052029 GAGTTACACCACGTGAAGAAAATGCAACTAA-AAAAAA-ATTATCTGAAATAAAATGGGAGGGGT
1 GAGTTACACCACGTGAAGAAAATGCAACTAATAAAAAATATTATATGAAATAAAATGGGAGGGGT
* * **
32052092 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTATTACTCTCACCCAAGCGCGCTTAACT
66 GCAACACGAGGACTTCCAAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGAACGCTTAACT
* *
32052157 GCGGCGTTTTGATGGGATCCGGTGCATTAG
131 GCGGAGTTTTGATGGGATCCGATGCATTAG
32052187 AGTTGGTATG
Statistics
Matches: 147, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
169 112 0.76
170 6 0.04
171 29 0.20
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (171 bp):
GAGTTACACCACGTGAAGAAAATGCAACTAATAAAAAATATTATATGAAATAAAATGGGAGGGGT
GCAACACGAGGACTTCCAAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGAACGCTTAACT
GCGGAGTTTTGATGGGATCCGATGCATTAGTGCTAGTATAT
Found at i:32053140 original size:304 final size:301
Alignment explanation
Indices: 32052027--32053691 Score: 2356
Period size: 303 Copynumber: 5.5 Consensus size: 301
32052017 GTGCTAGTAT
* *
32052027 ATGAGTTACACCACGTGAAGAAAATGCAACTAAAAAAAAATTATCTGAAATAAAATGGGAGGGGT
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGGT
* * *
32052092 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTATTACTCTCACCCAAGCGCGCTTAACT
66 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* * * *
32052157 GCGGCGTTTTGATGGGATCCGGTGCATTAGAGTTGGTATGATCGCACCCGTCAACTCTTGCGCAA
131 GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAA
* *
32052222 TCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAACGCAAATTCGACCAA
196 TCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAA
* * * * *
32052287 CTACCGTTTCAAATTATTTACTTCCCAAAACGCAAGTAACGA
261 ATATCG-TTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* * * *
32052329 ATGAGTCACACCACG-GGAGGAAAATGGAACT--AGAAAAATTTTATGAAATAAAATGGGAGGGG
1 ATGAGTTACACCACGTGGA-GAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGG
* * * * * *
32052391 TGCAACACGAGGACTTCGCAGGAGGTCATCCAACGTAATACTACTCTCGCCCAAGCACGCTTACC
65 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * *
32052456 TGCGCAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACACTTGCGCA
130 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
*
32052521 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCA
195 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* *
32052586 AATATTGGTTCAAATTATTTATTTCGCAAAACGTAAATAACGA
260 AATA-TCGTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* *
32052629 ATGAGTTACACCACGTAGAGAAAATGCAACTAAAAAAAATATTTTATGAAATAAAATGGGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAA-ATTATATGAAATAAAATGGGAGGGG
* * * * *
32052694 TGCAAGACGAGGACTTCCCAAGAGGTCCCCCATCCTAGTACTACTCTCGCCCAAGAACGTTTAAC
65 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * *
32052759 TGCGGAGTTTTAATGGGATCCGGTGCATTAGTGCTAGTATGATCGTACCCGTCAACTCTTGCGCA
130 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* *
32052824 ATCTGTTCATATAAAGGCTGCCCCTTATCGCTCTTGCGCCTCGAATTTGAATGCAAATTCGACCA
195 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * * *
32052889 AATATCGTTCCAAATTAGTTATTTCGCATAACACAAATAAGGA
260 AATATCGTT-CAAATTATTTATTTCGCAAAACGCAAATAACGA
*
32052932 ATGAGTTACACCACATGGAGAAAATGCAACTAAAAAAAAGCATTATATGAAATAAAATGGGAGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAA--ATTATATGAAATAAAATGGGAGGG
* * * *
32052997 GCGCAACACGAGGACTTCCCAGGAGGTCACCTATCCTAGGACTACTCTCTCCCAAGCACGCTTAA
64 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
** * *
32053062 CTTAGGAGTTCTGATGGGATCCAGCGCATTAGTGCTGGTATGATCGCA-CCGATCAACTCTTGCG
129 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG-TCAACTCTTGCG
* *
32053126 CAATCTATTCATATAAAGGCTGCCTCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGAC
193 CAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
32053191 CAAATATCGATTCAAATTATTTATTAT-GCAAAACGCAAATAACGA
258 CAAATATCG-TTCAAATTATTTATT-TCGCAAAACGCAAATAACGA
*** * * *
32053236 ATGAGTTACACGTTGTGAAGAAAATGCAACT-AAATAAAATTATATGAAATAAATTGGGAGGGGT
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGGT
* * *
32053300 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCATGGACGCTTAACA
66 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
* * * *
32053365 GCGGAGTTCTGATGAGATCTGGTGCATTAATGCTGTTATGATCGCACCCGTCAACTCTTGCGCAA
131 GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAA
* *
32053430 TCTATTTATATAAAGGCTGCCCCTTACCGC-CATTGCGCCTCGAATTTGAATGCAAATTCGACCA
196 TCTATTCATATAAAGGCTGCCCCTTATCGCAC-TTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
32053494 AATAACTTTTCAAATTATTTATTTCGCAAAACGCAAATAATGA
260 AATATC-GTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* * * *
32053537 ATTAGTTACACCACGTGGAGAAATTGCAAC-AAAAAAAAACTTTATATGAAATAAAATAGGAGCG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAAA--TTATATGAAATAAAATGGGAGGG
* * *
32053601 GTGCAACACGTGGACTTCCCAAGAGGTCACCCATCTTAGTACTACTCTCGCCCAAGCACGCTTAA
64 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * *
32053666 CTGCAGAGTTCTGATGGAATCTGGTG
129 CTGCGGAGTTCTGATGGGATCCGGTG
32053692 TGCAATCTAT
Statistics
Matches: 1207, Mismatches: 138, Indels: 35
0.87 0.10 0.03
Matches are distributed among these distances:
300 265 0.22
301 267 0.22
302 37 0.03
303 381 0.32
304 254 0.21
305 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (301 bp):
ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGGT
GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAA
TCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAA
ATATCGTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
Found at i:32054243 original size:301 final size:302
Alignment explanation
Indices: 32053693--32054546 Score: 1192
Period size: 301 Copynumber: 2.8 Consensus size: 302
32053683 AATCTGGTGT
* * ** * *
32053693 GCAATCTATTTATATAAAGGCCGCCCCTTATCGCACTTTTGCCTCGCATTTGAATGCAAATTCTA
1 GCAATCTATTTATATAAAGGCTGACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * * **
32053758 ACAAATAACGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAATTTGTTACACCACGTGGA
66 CCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATAAGTTACACCACGTGGA
* * **
32053823 GAAAATGCAACTAAAAAAACT-TTATAAGAAATAAAATGGGAAGGGTGCAACATTACGACTTCCA
131 GAAAATGCAACTAAAAAAA-TATTATATGAAATAAAATGGGAGGGGTGCAACACGACGACTTCCA
* * * * *
32053887 AAGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCACGCTAAATTGTGGAGTTCCAAAGAGAT
195 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCCAAAGAGAT
* * * *
32053952 CCGGTGCATTTGTGCTGGTATGATCGCACCCGTCAACTTTTGC
260 CCGGTGCATTAGTGCTGGTATAATCGCACCCGTCAAATCTTGC
*
32053995 GCAATCTATTTATATAAAGGCTGACCCTTATCGCACTTGCGCCTCGAATTTAAATG-AAATTCGA
1 GCAATCTATTTATATAAAGGCTGACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
* * * *
32054059 CCGAATATCGTTTCAAATTATTAATTTTGCAAAACGCAAAAAACGAATAAGTTACACCACGTGGA
66 CCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATAAGTTACACCACGTGGA
* * * *
32054124 GAAAATGCAACTAAAAAAATATTTTATGAAATAAAATGGGAGGGGTGCAACACGAGGATTTCCCA
131 GAAAATGCAACTAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGACGACTTCCAA
* * ** * * *
32054189 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAACACGCTTAGCTGCGGAGTTCTGACGGGATT
196 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCCAAAGAGATC
32054254 CGGTGCATTAGTGCTGGTATAATCGCACCCGTCAAATCTTGC
261 CGGTGCATTAGTGCTGGTATAATCGCACCCGTCAAATCTTGC
* *
32054296 GCAATCTATTCATATAAAGGCT-ACCTCTTATCGCAGTTGCGCCTCGAATTTGAATGCAAATTCG
1 GCAATCTATTTATATAAAGGCTGACC-CTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCG
* * *
32054360 ACCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAATAACGAATGAGTTACACCACCTGG
65 ACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATAAGTTACACCACGTGG
* * * **
32054425 AGAAATTGCGACTAATAGAAAATATTATATGAAATAAAATAGGAGGGGTGCAACACGATAACTTC
130 AGAAAATGCAACTAA-A-AAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGACGACTTC
*
32054490 CAAGGAGGTCACCCATCCTAGTATTACTCTCGCCCAAGCACGCTTAACTGCGGAGTT
193 CAAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTT
32054547 TTGATGGTAT
Statistics
Matches: 486, Mismatches: 61, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
300 4 0.01
301 258 0.53
302 128 0.26
303 1 0.00
304 95 0.20
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (302 bp):
GCAATCTATTTATATAAAGGCTGACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA
CCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATAAGTTACACCACGTGGA
GAAAATGCAACTAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGACGACTTCCAA
GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCCAAAGAGATC
CGGTGCATTAGTGCTGGTATAATCGCACCCGTCAAATCTTGC
Found at i:32055304 original size:776 final size:774
Alignment explanation
Indices: 32053808--32055310 Score: 2164
Period size: 776 Copynumber: 1.9 Consensus size: 774
32053798 TAACGAATTT
* *
32053808 GTTACACCACGTGGAGAAAATGCAACTAAAAAAACTTTATAAGAAATAAAATGGGAAGGGTGCAA
1 GTTACACCACGTGAAGAAAATGCAACTAAAAAAACATTATAAGAAATAAAATGGGAAGGGTGCAA
** * * *
32053873 CATTACGACTTCCAAAGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCACGCTAAATTGTGG
66 CACGACGACTACCAAAGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCACGCTAAACTGCGG
* * * * *
32053938 AGTTCCAAAGAGATCCGGTGCATTTGTGCTGGTATGATCGCACCCGTCAACTTTTGCGCAATCTA
131 AGTTCCAAAGAGATCCAGCGCATTAGAGCTGGTATGATCGCACCCGTCAACTATTGCGCAATCTA
* * *
32054003 TTTATATAAAGGCTGACCCTTATCGCACTTGCGCCTCGAATTTAAATGAAATTCGACCGAATATC
196 TTCATATAAAGGCTGACCCTTATCGCACTTGCACCTCGAATTTAAATGAAATTCGACCAAATATC
* *
32054068 GTTTCAAATTATTAATTTTGCAAAACGCAAAAAACGAATAAGTTACACCACGTGGAGAAAATGCA
261 GTTTCAAATTATTAATTTCGCAAAACGCAAAAAACGAATAAGTTACACCACGGGGAGAAAATGCA
* * * *
32054133 ACTAAAAAAATATTTTATGAAATAAAATGGGAGGGGTGCAACACGAGGATTTCCCAGGAGGTCAC
326 ACTAAAAAAACATTATATGAAATAAAATGGGAGCGGTGCAACACGAGGACTTCCCAGGAGGTCAC
* * * * *
32054198 CCATCCTAGTACTACTCTCGCCCAAACACGCTTAGCTGCGGAGTTCTGACGGGATTCGGTGCATT
391 CCATCCTAGTACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTCTGACAGGATCCAGCGCATT
* * *
32054263 AGTGCTGGTATAATCGCACCCGTCAAATCTTGCGCAATCTATTCATATAAAGGCTACCTCTTATC
456 AGAGCTGGTATAATCGCACCCGTCAAATCTTGCGCAATCTATTCAGATAAAGGCTACCCCTTATC
* * *
32054328 GCAGTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAT
521 GCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAA
* * * * * *
32054393 AACGCAAATAACGAATGAGTTACACCACCTGGAGAAATTGCGACTAATAGAAAATATTATATGAA
586 AACGCAAATAACGAATGAGTTACACCACCGGGAGAAAATGCAACTAACAAAAAACATTATATGAA
* * * *
32054458 ATAAAATAGGAGGGGTGCAACACGATAACTTCCAAGGAGGTCACCCATCCTAGTATTACTCTCGC
651 ATAAAATAGGAGCGGTGCAACACGAGAACTTCCAAGGAGGTCACCCATCCTAGTACTACTCTCAC
32054523 CCAAGCACGCTTAACTGCGGAGTTTTGATGGTATCCGATGCGTTAGTGCTAGTATATGA
716 CCAAGCACGCTTAACTGCGGAGTTTTGATGGTATCCGATGCGTTAGTGCTAGTATATGA
** *
32054582 GTTACACCACGTGAAGAAAATGCAACTAAAAAAA-ATTATCTGAAATAAAATGGGACGGGTGCAA
1 GTTACACCACGTGAAGAAAATGCAACTAAAAAAACATTATAAGAAATAAAATGGGAAGGGTGCAA
* * * * * * *
32054646 CACGAGGACTACCCAGGAGGTCACCCATCCTAGTATTACTCTCGCCCAAGCGCGCTTAACTGCGG
66 CACGACGACTACCAAAGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCACGCTAAACTGCGG
* ** *
32054711 CGTTTTGATAG-GATCCAGCGCATTAGAGCTGGTATGATCGCACCCGTCAACTATTGCGCAATCT
131 AG-TTCCAAAGAGATCCAGCGCATTAGAGCTGGTATGATCGCACCCGTCAACTATTGCGCAATCT
* *
32054775 ATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTTAATGCAAATTCGACCAAATA
195 ATTCATATAAAGGCTGACCCTTATCGCACTTGCACCTCGAATTTAAATG-AAATTCGACCAAATA
* * * * * *
32054840 TCTTTTGAAATTATTTATTTCGCAAAACGTAAATAACGAATGAGTTACACCACGGGGAGAAAATG
259 TCGTTTCAAATTATTAATTTCGCAAAACGCAAAAAACGAATAAGTTACACCACGGGGAGAAAATG
*
32054905 CAACTAACAAAAAACATTATATGAAATAAAGTGGGAGCGGTGCAACACGAGGACTTCCCAGGAGG
324 CAACT-A-AAAAAACATTATATGAAATAAAATGGGAGCGGTGCAACACGAGGACTTCCCAGGAGG
* * * * * *
32054970 TCACCCATCCTAGTATTACTCTCGCCCAAGCGCGCTTAACTGCGGCGTTTTGATAGGATCCAGCG
387 TCACCCATCCTAGTACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTCTGACAGGATCCAGCG
* * * * *
32055035 CATTAGAGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTGTTCAGATAAAGGGTTCCCCT
452 CATTAGAGCTGGTATAATCGCACCCGTCAAATCTTGCGCAATCTATTCAGATAAAGGCTACCCCT
* * *
32055100 TATCGCACTTGCACCTCGAATTTTAATGCAAATTCGACCAAATATCTTTTGAAATTATTTATTTC
517 TATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTC
* *
32055165 GCAAAACGTAAATAACGAATGAGTTACACCACGGGGAGAAAATGCAACTAACAAAAAACATTATA
582 GCAAAACGCAAATAACGAATGAGTTACACCACCGGGAGAAAATGCAACTAACAAAAAACATTATA
* * * * * *
32055230 TGAAATAAAGTGGGAGCGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTATTG
647 TGAAATAAAATAGGAGCGGTGCAACACGAGAACTTCCAAGGAGGTCACCCATCCTAGTACTACTC
*
32055295 TCACCCAAGCATGCTT
712 TCACCCAAGCACGCTT
32055311 CGCTACGGCG
Statistics
Matches: 637, Mismatches: 88, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
773 173 0.27
774 114 0.18
775 1 0.00
776 349 0.55
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (774 bp):
GTTACACCACGTGAAGAAAATGCAACTAAAAAAACATTATAAGAAATAAAATGGGAAGGGTGCAA
CACGACGACTACCAAAGAGGTCACCCATCCTAGTACTAATCTCGCCCAAGCACGCTAAACTGCGG
AGTTCCAAAGAGATCCAGCGCATTAGAGCTGGTATGATCGCACCCGTCAACTATTGCGCAATCTA
TTCATATAAAGGCTGACCCTTATCGCACTTGCACCTCGAATTTAAATGAAATTCGACCAAATATC
GTTTCAAATTATTAATTTCGCAAAACGCAAAAAACGAATAAGTTACACCACGGGGAGAAAATGCA
ACTAAAAAAACATTATATGAAATAAAATGGGAGCGGTGCAACACGAGGACTTCCCAGGAGGTCAC
CCATCCTAGTACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTCTGACAGGATCCAGCGCATT
AGAGCTGGTATAATCGCACCCGTCAAATCTTGCGCAATCTATTCAGATAAAGGCTACCCCTTATC
GCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAA
AACGCAAATAACGAATGAGTTACACCACCGGGAGAAAATGCAACTAACAAAAAACATTATATGAA
ATAAAATAGGAGCGGTGCAACACGAGAACTTCCAAGGAGGTCACCCATCCTAGTACTACTCTCAC
CCAAGCACGCTTAACTGCGGAGTTTTGATGGTATCCGATGCGTTAGTGCTAGTATATGA
Found at i:32055796 original size:608 final size:604
Alignment explanation
Indices: 32054578--32058030 Score: 4876
Period size: 608 Copynumber: 5.7 Consensus size: 604
32054568 GTGCTAGTAT
* * *
32054578 ATGAGTTACACCACGTGAAGAAAATGCAACT-AAAAAAA-ATTATCTGAAATAAAATGGGACGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
* * *
32054641 TGCAACACGAGGACTACCCAGGAGGTCACCCATCCTAGTATTACTCTCGCCCAAGCGCGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * * *
32054706 TGCGGCGTTTTGATAGGATCCAGCGCATTAGAGCTGGTATGATCGCACCCGTCAACTATTGCGCA
131 TACGGCGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* *
32054771 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTTAATGCAAATTCGACCA
196 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * * *
32054836 AATATCTTTTGAAATTATTTATTTCGCAAAACGTAAATAACGAATGAGTTACACCACGGGGAGAA
261 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAA
* *
32054901 AATGCAACTAACAAAAAACATTATATGAAATAAAGTGGGAGCGGTGCAACACGAGGACTTCCCAG
326 AATGCAACT---AAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG
* * * * *
32054966 GAGGTCACCCATCCTAGTATTACTCTCGCCCAAGCGCGCTTAACTGCGGCGTTTTGATAGGATCC
388 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
* * * * * * * *
32055031 AGCGCATTAGAGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTGTTCAGATAAAGGGTTC
453 GGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC
* * *
32055096 CCCTTATCGCACTTGCACCTCGAATTTTAATGCAAATTCGACCAAATATCTTTTGAAATTATTTA
518 CCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTA
*
32055161 TTTCGCAAAACGTAAATAACGA
583 TTTCGCAAAACGCAAATAACGA
* * * *
32055183 ATGAGTTACACCACGGGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAGTGGGAGCG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAATGGGAGGG
* * * * **
32055248 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTATTGTCACCCAAGCATGCTTCG
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * *
32055313 CTACGGCGTTTTGATAGGATCTGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
130 CTACGGCGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * *
32055378 AATCTATTCATATAGAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAAGGCAAATTC-ATC
195 AATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA-C
* * * * * *
32055442 CAAATATCGTTTCAATTTTTTTATTTTGTAAAATGCAAATAACGAATGAGTTACACCTCGTGGAG
259 CAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAG
32055507 AAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
324 AAAATGCAACT---AAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* *
32055572 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTACCTACGCG-GTTCTGATGGGA
386 AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCG-GAGTTCTGATGGGA
* *
32055636 TCCGGTGCATTAGTGTTAGTATGATCGCACCCGTCATCTCTTGCGCAATCTATTCATATAAAGGC
450 TCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGC
** *
32055701 TGCCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTCCAAATTAT
515 TGCCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTAT
*
32055766 TTATTTCGCATAACGCAAATAA-GAA
580 TTATTTCGCAAAACGCAAATAACG-A
* **
32055791 ATGAGTTACACCACATGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATATGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
*
32055856 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTACC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
**
32055921 TAC-GCGGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCTATCAACTCTTGCGC
131 TACGGC-GTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * *
32055985 AATCTGTTCCTATAGAGGCTGCCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACC
195 AATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * *
32056050 AAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAA-GAAATGAGTTACACCACATGGAG
260 AAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG-AATGAGTTACACCACGTGGAG
* **
32056114 AAAATGCAACTAAAAAAAATATTATATGAAATAAAATATGAGGGGTGCAACACGAGGACTTCCCA
324 AAAATGCAACT--AAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* *
32056179 AGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTT-TCGATGGTAT
387 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT-GATGGGAT
* ** *
32056243 CCGATGCATTAGTGCTAGTAAAATCGCACCCGTCAACTCTTGTGCAATCTATTCATATAAAGG-T
451 CCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
* * *
32056307 GTCCCCTTGTCGCAATTGCGCCTCGAA-TT---TG--AA---G----------G----AAATTAT
516 G-CCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTAT
*
32056349 TTATTTCGCAAAACGCAAATAACAA
580 TTATTTCGCAAAACGCAAATAACGA
* *
32056374 ATGAGTTACACCACGTGAAGAAAATGCAACT-AAAAAAA-ATTATCTGAAATAAAATGGGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
* * * *
32056437 TGCAACACGAGGACTTCCCAGGAGGTTACCCATCCTAGTATTACTCTCGCCTAAGCGCGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * *
32056502 TGCGGCGTTTTGATGAGATCCAGTGCATTAGAGCTGGTATGATCGCACCCGTCAACTGTTGCGCA
131 TACGGCGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * *
32056567 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTACGGCTCGAATTTGAATGCAAATTCGACAA
196 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* *
32056632 AATATCGTTACAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACAACG-GGAAGA
261 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGG-AGA
* *
32056696 AAATGAAACTAAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCTAGGA
325 AAATGCAACTAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGA
* * *
32056760 GGTCGCCCATCCTAGTACTACTCTCGCCCAAGCACGCTTACCTGTGGAGTTCTGATGGGATCCGG
390 GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGG
* *
32056825 TGCATTAGTGTTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTTCCC
455 TGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCC
* * * * * *
32056890 CTTATCGCACTTGTACCACGAATTTGACTACAAATTCGACCAAATATTGTTTGAAATTATTTATT
520 CTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATT
*
32056955 TTGCAAAACGCAAATAACGA
585 TCGCAAAACGCAAATAACGA
* * *
32056975 ATGAGTTGCACCACGTGGAGAAAATGCAACCAAAAAAAATATTATATGAAATAAAATGGGAGGGT
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
*
32057040 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * *
32057105 TACGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCA
131 TACGGCGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* *
32057170 ATCTATTGACATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
196 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* *
32057235 AATATCGTTTCTAATTATTTATTTCGCACAACGCAAATAACGAATGAGTTACACCACGTGGAGAA
261 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAA
* *
32057300 AATGCAACTAAAAAACTATTATTTGAAATAAAATGGGAGGGGTGAAACACGAGGACTTCCCAGGA
326 AATGCAACTAAAAAAC-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGA
*
32057365 GGTCACCCATCCTAGTACTACTCACGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGG
390 GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGG
* * * * *
32057430 TGCATTAGTGCTGGTATGAGCGCACTCGTCAACTCTTGCGCAATCTATTCATATATAGCCTG-CC
455 TGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCC
* * * *
32057494 CTTATCGCACTTGCACCTCGAATTTGAAGGAAAATTCAACCAAATATCGTTTCAATTTATTTATT
520 CTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATT
*
32057559 TTGCAAAACGCAAATAACGA
585 TCGCAAAACGCAAATAACGA
*
32057579 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATAAAATAAAATGGGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
* * * *
32057644 TGCAACATGAGGACTTCCCAGGAGGTCACCCATCCCAGTATTACTCTCGCCTAAGCACGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * ** * *
32057709 TGCGGAGTTCTGATGGGATCAGGTGCATTAGTGCAGTTATGAGAGCACCCGTCAATTTTTGCGCA
131 TACGGCGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* *
32057774 ATCTAATCATATAAAGGCT-CCCTCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACC
196 ATCTATTCATATAAAGGCTGCCC-CTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * ** * *
32057838 AAATATCGTTTCAATTTAATTATTTTACAAAACGTAAATAACGAATGAGTTACACCACGTAGAGA
260 AAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGA
*
32057903 AAATGCAACTAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGA
325 AAATGCAACTAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGA
* * * * *
32057968 GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGTTTAACTACGGTGTTTTGATAGGATCC
390 GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
32058031 TCAAATTTTT
Statistics
Matches: 2545, Mismatches: 256, Indels: 96
0.88 0.09 0.03
Matches are distributed among these distances:
578 177 0.07
579 10 0.00
580 2 0.00
581 258 0.10
582 11 0.00
583 58 0.02
584 2 0.00
587 2 0.00
597 2 0.00
600 2 0.00
601 58 0.02
602 9 0.00
603 377 0.15
604 384 0.15
605 196 0.08
606 189 0.07
607 272 0.11
608 535 0.21
609 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (604 bp):
ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
TACGGCGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAA
AATGCAACTAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAG
GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
GCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCC
TTATCGCACTTGCACCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTT
CGCAAAACGCAAATAACGA
Found at i:32055982 original size:303 final size:303
Alignment explanation
Indices: 32054578--32058030 Score: 4868
Period size: 303 Copynumber: 11.5 Consensus size: 303
32054568 GTGCTAGTAT
* * *
32054578 ATGAGTTACACCACGTGAAGAAAATGCAACT-AAAAAAA-ATTATCTGAAATAAAATGGGACGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
* * *
32054641 TGCAACACGAGGACTACCCAGGAGGTCACCCATCCTAGTATTACTCTCGCCCAAGCGCGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * * *
32054706 TGCGGCGTTTTGATAGGATCCAGCGCATTAGAGCTGGTATGATCGCACCCGTCAACTATTGCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* *
32054771 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCACCTCGAATTTTAATGCAAATTCGACCA
196 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* * *
32054836 AATATCTTTTGAAATTATTTATTTCGCAAAACGTAAATAACGA
261 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* * * *
32054879 ATGAGTTACACCACGGGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAGTGGGAGCG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAATGGGAGGG
* *
32054944 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTATTACTCTCGCCCAAGCGCGCTTAA
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * * *
32055009 CTGCGGCGTTTTGATAGGATCCAGCGCATTAGAGCTGGTATGATCGCACCCGTCAACTCTTGCGC
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * * * *
32055074 AATCTGTTCAGATAAAGGGTTCCCCTTATCGCACTTGCACCTCGAATTTTAATGCAAATTCGACC
195 AATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * *
32055139 AAATATCTTTTGAAATTATTTATTTCGCAAAACGTAAATAACGA
260 AAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* * * *
32055183 ATGAGTTACACCACGGGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAGTGGGAGCG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAATGGGAGGG
* * * * **
32055248 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTATTGTCACCCAAGCATGCTTCG
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * * *
32055313 CTACGGCGTTTTGATAGGATCTGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * *
32055378 AATCTATTCATATAGAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAAGGCAAATTC-ATC
195 AATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGA-C
* * * * *
32055442 CAAATATCGTTTCAATTTTTTTATTTTGTAAAATGCAAATAACGA
259 CAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* *
32055487 ATGAGTTACACCTCGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAATGGGAGGG
*
32055552 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAC
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * * *
32055617 CTACGCG-GTTCTGATGGGATCCGGTGCATTAGTGTTAGTATGATCGCACCCGTCATCTCTTGCG
130 CTGCG-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCG
*
32055681 CAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGAC
194 CAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
* *
32055746 CAAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAA-GAA
259 CAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG-A
* **
32055791 ATGAGTTACACCACATGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATATGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
*
32055856 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTACC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* **
32055921 TACGCG-GTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCTATCAACTCTTGCGC
131 TGCG-GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* * * *
32055985 AATCTGTTCCTATAGAGGCTGCCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACC
195 AATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* *
32056050 AAATATCGTTCCAAATTATTTATTTCGCATAACGCAAATAA-GAA
260 AAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG-A
* **
32056094 ATGAGTTACACCACATGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATATGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
*
32056159 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * ** *
32056224 TGCGGAGTT-TCGATGGTATCCGATGCATTAGTGCTAGTAAAATCGCACCCGTCAACTCTTGTGC
131 TGCGGAGTTCT-GATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* *
32056288 AATCTATTCATATAAAGG-TGTCCCCTTGTCGCAATTGCGCCTCGAA-TT---TG--AA---G--
195 AATCTATTCATATAAAGGCTG-CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGAC
*
32056341 --------G----AAATTATTTATTTCGCAAAACGCAAATAACAA
259 CAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* *
32056374 ATGAGTTACACCACGTGAAGAAAATGCAACT-AAAAAAA-ATTATCTGAAATAAAATGGGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
* * * *
32056437 TGCAACACGAGGACTTCCCAGGAGGTTACCCATCCTAGTATTACTCTCGCCTAAGCGCGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * * * *
32056502 TGCGGCGTTTTGATGAGATCCAGTGCATTAGAGCTGGTATGATCGCACCCGTCAACTGTTGCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * *
32056567 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTACGGCTCGAATTTGAATGCAAATTCGACAA
196 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
*
32056632 AATATCGTTACAAATTATTTATTTCGCAAAACGCAAATAACGA
261 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* *
32056675 ATGAGTTACACAACG-GGAAGAAAATGAAACT--AAAAAA-ATTATATGAAATAAAATGGGAGGG
1 ATGAGTTACACCACGTGG-AGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGG
* * *
32056736 GTGCAACACGAGGACTTCCTAGGAGGTCGCCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAC
65 GTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAA
* * *
32056801 CTGTGGAGTTCTGATGGGATCCGGTGCATTAGTGTTAGTATGATCGCACCCGTCAACTCTTGCGC
130 CTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGC
* ** * * *
32056866 AATCTATTCATATAAAGGCTTCCCCTTATCGCACTTGTACCACGAATTTGACTACAAATTCGACC
195 AATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * *
32056931 AAATATTGTTTGAAATTATTTATTTTGCAAAACGCAAATAACGA
260 AAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* * *
32056975 ATGAGTTGCACCACGTGGAGAAAATGCAACCAAAAAAAATATTATATGAAATAAAATGGGAGGGT
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
*
32057040 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * *
32057105 TACGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* *
32057170 ATCTATTGACATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
196 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* *
32057235 AATATCGTTTCTAATTATTTATTTCGCACAACGCAAATAACGA
261 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
* *
32057278 ATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAACTATTATTTGAAATAAAATGGGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
* *
32057342 TGAAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCACGCCCAAGCACGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* *
32057407 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGAGCGCACTCGTCAACTCTTGCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* * * * * *
32057472 ATCTATTCATATATAGCCTG-CCCTTATCGCACTTGCACCTCGAATTTGAAGGAAAATTCAACCA
196 ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
* *
32057536 AATATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACGA
261 AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
*
32057579 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATAAAATAAAATGGGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
* * * *
32057644 TGCAACATGAGGACTTCCCAGGAGGTCACCCATCCCAGTATTACTCTCGCCTAAGCACGCTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * ** * *
32057709 TGCGGAGTTCTGATGGGATCAGGTGCATTAGTGCAGTTATGAGAGCACCCGTCAATTTTTGCGCA
131 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
* *
32057774 ATCTAATCATATAAAGGCT-CCCTCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACC
196 ATCTATTCATATAAAGGCTGCCC-CTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACC
* * ** *
32057838 AAATATCGTTTCAATTTAATTATTTTACAAAACGTAAATAACGA
260 AAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
*
32057882 ATGAGTTACACCACGTAGAGAAAATGCAACT--AAAAAATATTATATGAAATAAAATGGGAGGGG
1 ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
*
32057945 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGTTTAAC
66 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
* * * *
32058010 TACGGTGTTTTGATAGGATCC
131 TGCGGAGTTCTGATGGGATCC
32058031 TCAAATTTTT
Statistics
Matches: 2860, Mismatches: 248, Indels: 88
0.89 0.08 0.03
Matches are distributed among these distances:
278 172 0.06
279 12 0.00
280 58 0.02
282 2 0.00
284 3 0.00
287 1 0.00
294 1 0.00
297 3 0.00
299 2 0.00
300 264 0.09
301 305 0.11
302 346 0.12
303 860 0.30
304 829 0.29
305 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (303 bp):
ATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGAGGGG
TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCA
ATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCA
AATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGA
Found at i:32058179 original size:185 final size:182
Alignment explanation
Indices: 32057865--32058204 Score: 518
Period size: 185 Copynumber: 1.9 Consensus size: 182
32057855 AATTATTTTA
* * * * *
32057865 CAAAACGTAAATAACGAATGAGTTACACCACGTAGAGAAAATGCAACTAAAAAATATTATATGAA
1 CAAAACGCAAATAACGAATGAGTTACACCACGTAGAGAAAATGAAACTAAAAAACATGATACGAA
* *
32057930 ATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
66 ATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCACCCTAGTAATACTCTCGC
* *
32057995 CCAAGCACGTTTAACTACGGTGTTTTGATAGGATCCTCAAATTTTTATTTCG
131 CCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCTCAAATTTTTATTTCG
*
32058047 CAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGAAACTAAAAAAAAACATGATAC
1 CAAAACGCAAATAACGAATGAGTTACACCACGTAGAGAAAATGAAACT---AAAAAACATGATAC
* * * *
32058112 GAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCGGGATGTCACCCACCCTAGTAATCCTCT
63 GAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCACCCTAGTAATACTCT
*
32058177 CGCCCAAGCACGCTTAACTGCGGCGTTT
128 CGCCCAAGCACGCTTAACTACGGCGTTT
32058205 GAACGGGATC
Statistics
Matches: 140, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
182 45 0.32
185 95 0.68
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (182 bp):
CAAAACGCAAATAACGAATGAGTTACACCACGTAGAGAAAATGAAACTAAAAAACATGATACGAA
ATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCACCCTAGTAATACTCTCGC
CCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCTCAAATTTTTATTTCG
Found at i:32058889 original size:303 final size:300
Alignment explanation
Indices: 32058034--32061426 Score: 4803
Period size: 302 Copynumber: 11.2 Consensus size: 300
32058024 AGGATCCTCA
*
32058034 AATT-TTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGAAACTAAA
1 AATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT--A
* * * * * *
32058098 AAAAAACATGATACGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCGGGATGTCACCCAC
64 AAAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * *
32058163 CCTAGTAATCCTCTCGCCCAAGCACGCTTAACTGCGGCG-TTTGA-ACGGGATCCGGTGCATTAG
129 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATA--GGATCCGGTGCATTAG
* ** * *
32058226 TACTGGTATGATCGCACCAATCAACTCTTGCGCAATCAATTCACATAAAGGCTGCCCCTTATCGC
192 TGCTGGTATGATCGCA-CTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* *
32058291 ACTTGCGCCTCGAATTTGAATGCAAATTAGACCAAATATCGTTTC
256 ACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
*
32058336 AAATTATTTATTTCGCACAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
1 -AATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
* * *
32058401 AAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCGGGATGTCACCCACC
65 AAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * * *
32058466 CTAGTAATCCTCTCGTCCAAGCACGCTTAACTGCGGCG-TTTGA-ACGAGATCCGGTGCATTAGT
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATA-G-GATCCGGTGCATTAGT
* * *
32058529 GCTGGTATGATCGCACCAGTCAACTCTTGCGCAATCAATTCACATAAAGGCTGCCCCTTATCGCA
193 GCTGGTATGATCGCA-CTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* *
32058594 CTTGCGCCTCGAATTTGAAGGCAAATTTGACCAAATATTGTTTC
257 CTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
* *
32058638 AATGTATTTATTTTGCAAAACGCAAATAACGAATGAGTTACACCATGTGGAGAAAATGCAACTAA
1 AAT-TATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-A
32058703 AAAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
64 AAAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
32058768 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTG
129 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTG
* *
32058833 CTGGTATGAGCGCACCTGTCAACTTTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
194 CTGGTATGATCGCA-CTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* *
32058898 TTGCGCCTCGAATTTGAAGGCAAATTTGACCAAATATTGTTTC
258 TTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
* *
32058941 AATGTATTTATTTTGCAAAACGCAAATAACGAATGAGTTACACCATGTGGAGAAAATGCAACTAA
1 AAT-TATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-A
*
32059006 AAAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCAT
64 AAAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * * *
32059071 CCTCGTACTACTCTAGCCCAAGCACGTTTAACTACGGCGTTTGGATAGGATCTGGTGCATTAGTG
129 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTG
* * * *
32059136 CTGGTATGATCGCACTCGTCAACTCTTACGCAATCCATTCATATAAAGGCTGTCCCTTATCACAC
194 CTGGTATGATCGCACT-GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
* * *
32059201 TTGCGCCTCGAACTTGAATGCAAATTCAACCAAATATCGTTTC
258 TTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
* *
32059244 AAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCAGGTCGAGAAAATGCAACTAA
1 -AATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
* * * *
32059309 AAAAATAGTATATGAACTAAAATGGGATGGTTGCAACACGAGGACTTCCTAGGAGGTCACCCATC
65 AAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * *
32059374 CTCGTAGTACTCTCGCCCAAGCACGTTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGC
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGC
* * * *
32059439 AGGTTTGATCGCACTCGTCAACTCTTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACT
195 TGGTATGATCGCACT-GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
32059504 TGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
259 TGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
* * * * *
32059546 AATTTATTTATTTTGCAAAACGTAAATAAAGAATGTGTTAGACCACGTGGAGAAAATGCAAC-AA
1 AA-TTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
*
32059610 AAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
65 AAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * *
32059675 CTAGTACTACTCTCGCCCAAGAACGTTTAACTACGGCGTGTTGATAGGATCCGGTGCATTAGTGC
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGC
* * *
32059740 TGGTATGATCGCACTCGTCAACTATTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACT
195 TGGTATGATCGCACT-GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
*
32059805 TGCGCCTCGAATTTGAAAGCAAATTCGACCAAATATCGTTTC
259 TGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
32059847 AAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
1 -AATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
* * * *
32059912 AAAAATATTATATGAAATAAAATTGGATGGGTGCAACACGAGGACTTCCCGGGATGTCACCCACC
65 AAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * * * *
32059977 CTAGTAATCCTCTCGCCCAAGGATGCTTAAC-AGCGGCG-TTTGAATGGGATCCGGTGCATTAGT
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTA-CGGCGTTTTG-ATAGGATCCGGTGCATTAGT
* *
32060040 GCTGGTATGATCGCACCTGTCAACTCTTGCGCAATCTATTCACATAAAGGCTACCCCTTATCGCA
193 GCTGGTATGATCGCA-CTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* * *
32060105 CTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATATTGTTTC
257 CTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
* * * * *
32060149 TAATTATTTATTTCGGACAACGCAAAAAACGAATGAGTTACACCACGTGGAAAAAATGCAGCTAA
1 -AATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
* * * *
32060214 AAAAATTATTATATGAAATAAAATGGAAGGGGTGAAACACGAGGACTTCCCAGGAGGTCACCTAT
65 AAAAA-TATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * * * * * *
32060279 CCTAGTACAACTCACGCCCAAGCACGTTTAACTGCGGAGTTCTGATGGGATCCGGTGTATTAGTG
129 CCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTG
* * ** *
32060344 CTGGTATGAGCGCAATTGTCAACAATTGCGCAATCTATTCATATAGAGGCTG-CCCTTATCGCAC
194 CTGGTATGATCGC-ACTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
*
32060408 TTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCATTTC
258 TTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
* * *
32060451 AATTTATTTATTTTGCAAAACGCAGATAACGAATGAGTTACACCACGTAGAGAAAATGCAACTAA
1 AA-TTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
* *
32060516 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGA-GACTTCCCAGGAGGTCACCCATC
65 AAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * * * * * * *
32060580 CCAGTATTACTCTCGCCTAAGCACGCTTAACTGCGGAGTTCTGATGGGATCAGGTGCATTAGTGC
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGC
* * ** * * * * *
32060645 AGTTATGAGAGCACCCGTCAATTTTTGCGCAATCTAATCATATAAAGGCTCCCCCTTATCGCACT
195 TGGTATGATCGCA-CTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACT
*
32060710 TGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCATTTC
259 TGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
* * *
32060752 AATTTATTTATTTTGCAAAACGCAGATAACGAATGAGTTACACCACGTAGAGAAAATGCAACTAA
1 AA-TTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
* * * *
32060817 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGATGACTTCCTAGGAGGTCACCCATC
65 AAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * * * * * * *
32060882 CTTGTACTTCTCTCGCCCAAGCACACTTAACT-GGGAAGTTCTGATTGGATCAGGTGCATTAGTG
130 CTAGTACTACTCTCGCCCAAGCACGCTTAACTACGG-CGTTTTGATAGGATCCGGTGCATTAGTG
* ** * * * *
32060946 CTGTTATGAGAGCAGTCGTCAACTTTTGCGCAATCTAATCATATAAAGGCTGCCTCTTATCGCAC
194 CTGGTATGATCGCACT-GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAC
*
32061011 TTTCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
258 TTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
* * * *
32061054 AATTTATTTATTTTGCAAAACGTAAATAACGAATGAGTTACACGACGTGGAGAAAATGCAGCTAA
1 AA-TTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-A
* * * *
32061119 AAAAAATATTGTATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGAAGGTCACCTAT
64 AAAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* *
32061184 CCTAGTACTACACTCGCCCAAGCACG-TTCAACTACGGTGTTTTGATAGGATCCGGTGCATTAGT
129 CCTAGTACTACTCTCGCCCAAGCACGCTT-AACTACGGCGTTTTGATAGGATCCGGTGCATTAGT
* * * *
32061248 GCTGGCATGATCGCACTCGTCAACTCTTGCGCAATCCATTCATATAAAGGCTGTCCCTTATCACA
193 GCTGGTATGATCGCACT-GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
*
32061313 CTTGCGCCTCGAATTTGAAAGCAAATTCGACCAAATATCGTTTC
257 CTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
32061357 AAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
1 -AATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA
32061422 AAAAA
65 AAAAA
32061427 NNNNNNNNNN
Statistics
Matches: 2835, Mismatches: 227, Indels: 57
0.91 0.07 0.02
Matches are distributed among these distances:
299 1 0.00
300 117 0.04
301 488 0.17
302 1189 0.42
303 967 0.34
304 72 0.03
305 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (300 bp):
AATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAA
AAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC
TAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCT
GGTATGATCGCACTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTG
CGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTC
Found at i:32060638 original size:905 final size:905
Alignment explanation
Indices: 32058031--32061426 Score: 5006
Period size: 905 Copynumber: 3.7 Consensus size: 905
32058021 GATAGGATCC
*
32058031 TCAAATT-TTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGAAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * *
32058095 AAAAAAAAACATGATACGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCGGGATGTCACC
66 -AAAAAAAACATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* *
32058160 CACCCTAGTAATCCTCTCGCCCAAGCACGCTTAACTGCGGCGTTTGAACGGGATCCGGTGCATTA
130 CACCCTAGTAATCCTCTCGCCCAAGCACGCTTAACAGCGGCGTTTGAATGGGATCCGGTGCATTA
* * *
32058225 GTACTGGTATGATCGCAC-CAATCAACTCTTGCGCAATCAATTCACATAAAGGCTGCCCCTTATC
195 GTGCTGGTATGATCGCACTC-GTCAACTCTTGCGCAATCTATTCACATAAAGGCTGCCCCTTATC
* *
32058289 GCACTTGCGCCTCGAATTTGAATGCAAATTAGACCAAATATCGTTTCAAATTATTTATTTCGCAC
259 GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAA
32058354 AACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAAT
324 AACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAAT
* * * * * *
32058419 AAAATGGGATGGGTGCAACACGAGGACTTCCCGGGATGTCACCCACCCTAGTA-ATCCTCTCGTC
389 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACA-ACTCTCGCC
* *
32058483 CAAGCACGCTTAACTGCGGCG-TTTGA-ACGAGATCCGGTGCATTAGTGCTGGTATGATCGCAC-
453 CAAGCACGTTTAACTACGGCGTTTTGATA-G-GATCCGGTGCATTAGTGCTGGTATGATCGCACT
* * *
32058545 CAGTCAACTCTTGCGCAATCAATTCACATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTT
516 C-GTCAACTCTTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTT
* * *
32058610 GAAGGCAAATTTGACCAAATATTGTTTCAATGTATTTATTTTGCAAAACGCAAATAACGAATGAG
580 GAAGGCAAATTCGACCAAATATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACGAATGAG
* *
32058675 TTACACCATGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATGGGATGGGTGCAA
645 TTACACCACGTGGAGAAAATGCAACT-AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAA
32058740 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGG
709 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGG
32058805 CGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGAGCGCACCTGTCAACTTTTGCGCAATCTA
774 CG-TTTGATAGGATCCGGTGCATTAGTGCTGGTATGAGCGCACC-GTCAACTTTTGCGCAATCTA
*
32058870 TTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTTGACCAAATAT
837 TTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATAT
*
32058935 TGTT
902 CGTT
* *
32058939 TC-AATGTATTTATTTTGCAAAACGCAAATAACGAATGAGTTACACCATGTGGAGAAAATGCAAC
1 TCAAAT-TATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAAC
* *
32059003 TAAAAAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCTAGGAGGTCACC
65 TAAAAAAAACATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* * * * * * * * *
32059068 CATCCTCGTACTACTCTAGCCCAAGCACGTTTAACTA-CGGCGTTTGGATAGGATCTGGTGCATT
130 CACCCTAGTAATCCTCTCGCCCAAGCACGCTTAAC-AGCGGCGTTTGAATGGGATCCGGTGCATT
* * * *
32059132 AGTGCTGGTATGATCGCACTCGTCAACTCTTACGCAATCCATTCATATAAAGGCTGTCCCTTATC
194 AGTGCTGGTATGATCGCACTCGTCAACTCTTGCGCAATCTATTCACATAAAGGCTGCCCCTTATC
* * *
32059197 ACACTTGCGCCTCGAACTTGAATGCAAATTCAACCAAATATCGTTTCAAATTATTTATTTCGCAA
259 GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAA
* * * *
32059262 AACGCAAATAACGAATGAGTTACACCAGGTCGAGAAAATGCAACTAAAAAAATAGTATATGAACT
324 AACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAAT
* * * * **
32059327 AAAATGGGATGGTTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTCGTAGTACTCTCGCCC
389 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCC
* *
32059392 AAGCACGTTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCAGGTTTGATCGCACTCGT
454 AAGCACGTTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCACTCGT
32059457 CAACTCTTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTTGAAG
519 CAACTCTTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTTGAAG
* * * *
32059522 GCAAATTCGACCAAATATCGTTTCAATTTATTTATTTTGCAAAACGTAAATAAAGAATGTGTTAG
584 GCAAATTCGACCAAATATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACGAATGAGTTAC
32059587 ACCACGTGGAGAAAATGCAAC-AAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGA
649 ACCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGA
* *
32059651 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGAACGTTTAACTACGGCGTGT
714 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGT-T
* * *
32059716 TGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCACTCGTCAACTATTGCGCAATCCATTCAT
778 TGATAGGATCCGGTGCATTAGTGCTGGTATGAGCGCAC-CGTCAACTTTTGCGCAATCTATTCAT
* *
32059781 ATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTTGAAAGCAAATTCGACCAAATATCGTT
842 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTT
32059845 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * * *
32059910 -AAAAAAATATTATATGAAATAAAATTGGATGGGTGCAACACGAGGACTTCCCGGGATGTCACCC
66 AAAAAAAACATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* *
32059974 ACCCTAGTAATCCTCTCGCCCAAGGATGCTTAACAGCGGCGTTTGAATGGGATCCGGTGCATTAG
131 ACCCTAGTAATCCTCTCGCCCAAGCACGCTTAACAGCGGCGTTTGAATGGGATCCGGTGCATTAG
*
32060039 TGCTGGTATGATCGCAC-CTGTCAACTCTTGCGCAATCTATTCACATAAAGGCTACCCCTTATCG
196 TGCTGGTATGATCGCACTC-GTCAACTCTTGCGCAATCTATTCACATAAAGGCTGCCCCTTATCG
* * * * *
32060103 CACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATATTGTTTCTAATTATTTATTTCGGACA
260 CACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
* * *
32060168 ACGCAAAAAACGAATGAGTTACACCACGTGGAAAAAATGCAGCTAAAAAAATTATTATATGAAAT
325 ACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAA-TATTATATGAAAT
* * * *
32060233 AAAATGGAAGGGGTGAAACACGAGGACTTCCCAGGAGGTCACCTATCCTAGTACAACTCACGCCC
389 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCC
* * * * * * * *
32060298 AAGCACGTTTAACTGCGGAGTTCTGATGGGATCCGGTGTATTAGTGCTGGTATGAGCGCAATTGT
454 AAGCACGTTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCACTCGT
** * * *
32060363 CAACAATTGCGCAATCTATTCATATAGAGGCTG-CCCTTATCGCACTTGCGCCTCGAATTTGAAG
519 CAACTCTTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTTGAAG
* *
32060427 GCAAATTCGACCAAATATCATTTCAATTTATTTATTTTGCAAAACGCAGATAACGAATGAGTTAC
584 GCAAATTCGACCAAATATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACGAATGAGTTAC
* *
32060492 ACCACGTAGAGAAAATGCAACTAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGA
649 ACCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGA
* * * * *
32060557 -GACTTCCCAGGAGGTCACCCATCCCAGTATTACTCTCGCCTAAGCACGCTTAACTGCGGAGTTC
714 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTT-
* * * * * * *
32060621 TGATGGGATCAGGTGCATTAGTGCAGTTATGAGAGCACCCGTCAATTTTTGCGCAATCTAATCAT
778 TGATAGGATCCGGTGCATTAGTGCTGGTATGAGCGCA-CCGTCAACTTTTGCGCAATCTATTCAT
* *
32060686 ATAAAGGCTCCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCATT
842 ATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTT
* * * *
32060750 TCAATTTATTTATTTTGCAAAACGCAGATAACGAATGAGTTACACCACGTAGAGAAAATGCAACT
1 TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
* * *
32060815 -AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGATGACTTCCTAGGAGGTCACCC
66 AAAAAAAACATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * * * * * * * *
32060879 ATCCTTGTACTTCTCTCGCCCAAGCACACTTAACTG-GGAAGTTCTG-ATTGGATCAGGTGCATT
131 ACCCTAGTAATCCTCTCGCCCAAGCACGCTTAACAGCGG-CGTT-TGAATGGGATCCGGTGCATT
* ** * * * * *
32060942 AGTGCTGTTATGAGAGCAGTCGTCAACTTTTGCGCAATCTAATCATATAAAGGCTGCCTCTTATC
194 AGTGCTGGTATGATCGCACTCGTCAACTCTTGCGCAATCTATTCACATAAAGGCTGCCCCTTATC
* * * *
32061007 GCACTTTCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTTCAATTTATTTATTTTGCAA
259 GCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAA
* * * *
32061072 AACGTAAATAACGAATGAGTTACACGACGTGGAGAAAATGCAGCTAAAAAAAATATTGTATGAAA
324 AACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAATATTATATGAAA
* * * *
32061137 TAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGAAGGTCACCTATCCTAGTACTACACTCGCC
388 TAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCC
* * *
32061202 CAAGCACGTTCAACTACGGTGTTTTGATAGGATCCGGTGCATTAGTGCTGGCATGATCGCACTCG
453 CAAGCACGTTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCACTCG
*
32061267 TCAACTCTTGCGCAATCCATTCATATAAAGGCTGTCCCTTATCACACTTGCGCCTCGAATTTGAA
518 TCAACTCTTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTTGAA
* * *
32061332 AGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTA
583 GGCAAATTCGACCAAATATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACGAATGAGTTA
32061397 CACCACGTGGAGAAAATGCAACTAAAAAAA
648 CACCACGTGGAGAAAATGCAACTAAAAAAA
32061427 NNNNNNNNNN
Statistics
Matches: 2234, Mismatches: 232, Indels: 46
0.89 0.09 0.02
Matches are distributed among these distances:
904 5 0.00
905 1020 0.46
906 603 0.27
907 7 0.00
908 536 0.24
909 62 0.03
910 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (905 bp):
TCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT
AAAAAAAACATTATATGAAATAAAATGGGATGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
ACCCTAGTAATCCTCTCGCCCAAGCACGCTTAACAGCGGCGTTTGAATGGGATCCGGTGCATTAG
TGCTGGTATGATCGCACTCGTCAACTCTTGCGCAATCTATTCACATAAAGGCTGCCCCTTATCGC
ACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAA
CGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAA
AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTCGCCCAA
GCACGTTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCACTCGTCA
ACTCTTGCGCAATCCATTCATATAAAGGCTGCCCCTTATCACACTTGCGCCTCGAATTTGAAGGC
AAATTCGACCAAATATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACGAATGAGTTACAC
CACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAGG
ACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTGA
TAGGATCCGGTGCATTAGTGCTGGTATGAGCGCACCGTCAACTTTTGCGCAATCTATTCATATAA
AGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTT
Found at i:32063724 original size:302 final size:297
Alignment explanation
Indices: 32063091--32063874 Score: 1126
Period size: 302 Copynumber: 2.6 Consensus size: 297
32063081 GACTTTCATG
* *
32063091 AACTCTTCTGCAATCTATTCATATAAAGGCTGCCCCATATCGCACTTGCGCCTCGAATTTTAATG
1 AACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA-TTTAATG
*
32063156 CAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAATAACGAATGAGTTACA
65 CAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACA
* * *
32063221 CCACGTGGAGAAAATGCTACTAACAAAAAACATTATATTAAATAAAATAGG-GGGTACACGAGGA
130 CCACGTGGAGAAAATGCAACTAA-AAAAAA-ATTATATGAAATAAAATGGGAGGGTACACGAGGA
* * * * *
32063285 CTTCCCAGGAGGTCGCCCACCCTAGTAATCCTCTCGCCGAAGCACGCTTAATTGCGGCGTTTGAA
193 CTTCCCAGGAGGTCACCCACCCTAGTAATACTCTCGCCCAAGCACGCTTAACTACGGCGTTTGAA
* * * *
32063350 TGGGATTCGGTGCATTAGTGCTGGTATGATCGTACCCATC
258 TAGGATTCAGTGCATTAGTGCTGATATGATCGCACCCATC
* *
32063390 AACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTGAAGG
1 AACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTT-AATG
* * * *
32063455 CAAATTCGACCTAAGATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACGAATGAGTTACA
65 CAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACA
*
32063520 CCACGTGGAGAAAATGCAACTAAAAAAATATTATATGAAATAAAATGGGATGGGTGCAACACGAG
130 CCACGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGA-GGGT---ACACGAG
* * *
32063585 GACTTCCCAGGAGGTCACCCATCCT-GTTACTACTCTCGCCCAAGCACGTTTAACTACGGCGTTT
191 GACTTCCCAGGAGGTCACCCACCCTAG-TAATACTCTCGCCCAAGCACGCTTAACTACGGCG-TT
*
32063649 TG-ATAGG-TTCCAGTGCATTAGTGCTGATATGATCGCACCCGTC
254 TGAATAGGATT-CAGTGCATTAGTGCTGATATGATCGCACCCATC
*
32063692 AACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATGTTAATC
1 AACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAAT-TTAATG
* ** * *
32063757 CAAATTAGACCAAATATAATTCCAAATTATTTATTTCGCAAAACGCGAATAACGAATGAGTTACA
65 CAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACA
*
32063822 CCACGTGGAGAAAATGCAACTAACAAAAAAATTATATGAAATAAAGTGGGAGG
130 CCACGTGGAGAAAATGCAACTAA-AAAAAAATTATATGAAATAAAATGGGAGG
32063875 TCACCCATCC
Statistics
Matches: 434, Mismatches: 40, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
297 18 0.04
298 8 0.02
299 143 0.33
301 3 0.01
302 231 0.53
303 31 0.07
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (297 bp):
AACTCTTGTGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAATGC
AAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACAC
CACGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGTACACGAGGACTT
CCCAGGAGGTCACCCACCCTAGTAATACTCTCGCCCAAGCACGCTTAACTACGGCGTTTGAATAG
GATTCAGTGCATTAGTGCTGATATGATCGCACCCATC
Found at i:32064879 original size:304 final size:303
Alignment explanation
Indices: 32063917--32069059 Score: 7167
Period size: 304 Copynumber: 17.0 Consensus size: 303
32063907 CGTTTAACTA
* * * * * *
32063917 CGGTGTATTAGTGGTGGCATGATCGCACTCGTCAACTCTTGCGCAATCTATTCACATAAAGGTTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * *
32063982 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGTAAATTCGACCAAATATTGTTTCAAATTAATT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* * *
32064047 ATTTCGCACAACACAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAATAT
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACAT
* * *
32064111 TATATGAAATAAAATGGGAAGGGTGAAACACGAGGACTTCCCAGGAGGTTACCCATCCTAGTACT
196 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
*
32064176 ACTCTCGCCCAAGCACGCTTAACTACGGAGTTTTGATAGGATC
261 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * * *
32064219 CGATGCATTAGTGCTGGTATGAGCGCACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGACTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * *
32064284 CCCCTTATCGCACTTGCACCTCGAATTTGAAGGCAGATTCGACCAAAGATCGTTTCAATTTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* * *
32064349 ATTTTGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGTAACTAAAAAAAA-TT
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACAT
** *
32064413 TATATGAAATAAAATGGGATAGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTGGTACT
196 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * *
32064478 ACTCTCGCCCAAGCAAGTTTAACTACGGCGTTTTGATTGGATC
261 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
*
32064521 CGGTGCATTAGTGCTGGTACGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * *
32064586 CCCCTTATCGCACTTGCGCCTCGAATTTGAATCCAAATTAGACCAAATATCATTTCAAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* *
32064651 ATTTCGCAAAACGCGAATAACGAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAACA
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAACA
* * * * *
32064716 TTATATGAAATAAAGTGGGAGGGGTGCAACACGAGGGCTTCCTAGGTGGTCACCCATCCTAGGAC
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * * *
32064781 TACTCTCGCCCTAGCACGCTTAACTTCGGCGTTTTGATCGGAAC
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * *
32064825 CGGTGCATTAGTGCTGATATGATCGCACCTGTCAACTCTTGCGCAATGTATTCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * *
32064890 CCCCTTATCGTACTTTCGCCACGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
32064955 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAATAAAAAACA
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAACA
* * * *
32065020 TTAAATGAAATAAAGTGGGAGGGGTGCAACACGAGGACTTCCCAGGACGTCAGCCATCCTAGTAC
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* *
32065085 TAGTCTCTCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
*
32065129 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCACATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * *
32065194 CCCCTTATCGCACTTGCGCCTCGACTTTGAATGCAAATTTGGCCAAATATCTTTTCTAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* * * * * *
32065259 ATTTCACACAACACAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAGAAATAC
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACAT
** * * *
32065324 TACCTGAAATAAAATGGGAGGGGTGCAACAGGATGACTTCCCAGGAGGTCACCCATCCTAGTACA
196 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * * * *
32065389 ACTCACGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
261 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * ** * *
32065432 CGGTGCATTAGTGCTGGTATGAGCACAGTCGTCAGCTCTTGCGCAATCTATTCATATAGAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* *
32065497 -CCCTTATCGCACTAGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCGTTT-AAATTTATT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAA-TTATT
* *
32065560 TATTTTGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAATA
130 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACA
* * * * *
32065624 TTATACGAAATAAAATGGGAGGGGTGCAACACGATGAGTTCCCAGGAGGTCACCCATCCAAGTAT
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * * * * *
32065689 TACTCTCGCCCAAGCAAGCTTAAATGCGGAGTTCTGATGGGATC
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * * ** * * *
32065733 AGGTGCATTAGTACTGTTATGAGAGCAACCGTCAACTTTTGCGCAATCTAATCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * * *
32065798 CCTCTTATCACACTTTCGCCTCGAATTTGAAAGCAAATTCGACCAAATATCATTTCAATTTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* *
32065863 ATTTTC-CAAAACGTAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATA
131 A-TTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACA
*
32065927 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC-GGAGGTCACCCATCCTAGTAA
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * *
32065991 TACTCTCGGCCAAGCACGTTTAACTACGGTGTTTTGATAGGATC
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
*
32066035 CGGTGCATTAGTGCTGGTATGATCGCACTCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* *
32066100 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAATTTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* *
32066165 ATTTTC-CAAAACGTAAATAACGAATGAGTTACTCCACGTGGAGAAAATGCAACT-AAAAAAACA
131 A-TTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACA
* * * *
32066228 TTATATGAAATAAAATGGGAGGGGTGAAACACTAGGATTTCCC-GCGAGGTTACCCATCCTAGTA
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG-GAGGTCACCCATCCTAGTA
* * * * *
32066292 CTACTCTCGCCCAAGCACGCTTGACTGCGGAGTTCTGATGGGATC
259 CTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
*
32066337 CGGTGCATTAGTGCTGGTATGAGT-GCACCCGTCAACACTTGCGCAATCTATTCATATAAAGGCT
1 CGGTGCATTAGTGCTGGTATGA-TCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
* * *
32066401 GCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTATT
65 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT
** * * *
32066466 TATTTTACAAAACACAAATAACGAATGAGTTACACCACGTGGATAAAATG-ACACTAAAAAAAAT
130 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA-ACTAAAAAAAAC
* *
32066530 ATTATATGAAATAAAATGGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCGAGTA
194 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
* * * * * * * *
32066595 CTACTCTC-CCGCAAGCACTCTTACCTGCAGTGTTCTGATGGGATA
259 CTACTCTCGCC-CAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * * * *
32066640 CGGTGCATTAGTGCTTGTATAAGCGCACCCTTCAACTTTTGCGCAATCTATTCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
*
32066705 CCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* *
32066770 ATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAACA
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAACA
* * * * *
32066835 TTATATTAAATAAAAT-AG-GGGGTG---CACGAGGACTT-CCAGGAGGTCGCCCACCCTAGTAA
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * * * *
32066894 TCCTCTCGCCCAAGCACGCTTAATTGCGGCG-TTTGAATGGGATT
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTG-ATAGGATC
* *
32066938 CGGTGCATTAGTGCTGGTATGATCGTACCCGTCATCTCTTGCGCAATCTATTCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * *
32067003 CCCCTTATCGCAATTGCGCCTCGAATTTGAAGGCAAACTCGACCAAATATCGTTTGAATTTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
* * * * *
32067068 ATTTTGCAAGACGCAAATAACGAATGAGTTGCACCACGTTGAGAAAATGCAACTAAAAAAAATAT
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACAT
*
32067133 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTATT
196 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * * * * *
32067198 ACTCTCTCCCAAGCACGCTTAGCTGCGGAGTTCTGATGGGATC
261 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * * * *
32067241 CGGTACATTAGTACTGGTATGAGCGCACCCGTGAACT-TTTCTGCAATCTATTCATATAAAGGCT
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGC-GCAATCTATTCATATAAAGGCT
* *
32067305 GCCCCATATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATT
65 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT
* *
32067370 TATTTCGCATAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAAC
130 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAAC
* *
32067435 ATTATATTAAATAAAAT-AG-GGGGTG---CACGAGGACTT-CCAGGAGGTCACCCATCCTAGTA
194 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
* *
32067494 CTACTATCACCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
259 CTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * * **
32067539 CGGTGTATTAGTGCTGGTATGATCGCGCCCGTCAACTCTTGCGGAATCTATTCCCATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* *
32067604 CCCCTTATCGCACTTGCGCCTCGACTTTGAATGCAAATTTGACCAAATATCGTTTCAAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
32067669 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACA
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAACA
* * * * *
32067734 TTAAATGAAATAAAGTGGGAGGGGTGCAACACGAGGACTTCGCAGGAGGTCACACATCCTAGGAC
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * *
32067799 TACTCTCGCCCTAGCACGCTTAACTATGGCGTTTTGATCGGATC
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * * *
32067843 CGGTGCATTAGTGCAGATATGATCGCACCCGTCAACTCTTGCGCAATGTATTCATATAAAGGCTA
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * *
32067908 CCCCTTATCGAACTTTCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
32067973 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACA
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAACA
* *
32068038 TTAAATGAAATAAAGTGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* *
32068103 TACTCTCACCCAAGCACGTTTAACTACGGCGTTTTGATAGGATC
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * *
32068147 CGGTGCATTAGTGTTGGTAAT-ATCTCACCCGTCAACTCTTGGGCAATCTATTCATATAAAGGCT
1 CGGTGCATTAGTGCTGGT-ATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
* * *
32068211 GCCCCTTATCGCAGTTGCGCCTCGAATTTTAATGCAAATTCGACTAAATATCGTTTCAAATTATT
65 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT
*
32068276 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGATAAAATGCAACTAACAAAAAAC
130 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAAC
** *
32068341 ATTATATGAAATAATGTGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATCCTAGTA
194 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
*
32068406 CTACAT-TCACCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
259 CTAC-TCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * ** * *
32068451 CGGTGCATTA--G-TGGTATGATCGCACCTGTCAACTAC-TGCGCAATCGATTGGTATAGAGCCT
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT-CTTGCGCAATCTATTCATATAAAGGCT
* * * *
32068512 GCCCCTTATCGCACTTCCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTATT
65 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATT
* * * * * * *
32068577 TATTTTGCAAGACACAAATAACAAAAGAGTTGCACCACGTGGAGAAAATGCAACTAAAAAAAATA
130 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACA
* * * * *
32068642 TTATATGAAATAAAGTGGGAGGGGTGCAAGACGAGGACTTCGCAGGAGGTCACACATCCTAGGAC
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
** *
32068707 TACTCTCGCCTTAGCACGCTTAACTACGGCGTTTTGATCGGATC
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
* * ** * *
32068751 CGGTGCATTA--G-TGGTATGATCGC-CCCTGTCAACTAC-TGCGCGATCGATTGGTATAGAGCC
1 CGGTGCATTAGTGCTGGTATGATCGCACCC-GTCAACT-CTTGCGCAATCTATTCATATAAAGGC
* * * * *
32068811 TGCCCCTTATCGCACTTCCGCCTCGCATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTAT
64 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTAT
* * * * * *
32068876 TTATTTTGCAAGACACAAATAACAAAAGAGTTGCACCACGTGGAGAAAATGCAACTAACAAAAAA
129 TTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAA
* * * * *
32068941 CATTATATGAAATAAAGTGGGAGGGGTGCAAGACGAGGACTTCGCAGGAGGTCACACATCCTAGG
193 CATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGT
** *
32069006 ACTACTCTCGCCTTAGCACGCTTAACTACGGCGTTTTGATCGGATC
258 ACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
32069052 CGGTGCAT
1 CGGTGCAT
32069060 NNNNNNNNNN
Statistics
Matches: 4363, Mismatches: 435, Indels: 87
0.89 0.09 0.02
Matches are distributed among these distances:
297 25 0.01
298 465 0.11
299 36 0.01
300 289 0.07
301 483 0.11
302 1115 0.26
303 722 0.17
304 1225 0.28
305 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (303 bp):
CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTT
ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACAT
TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATC
Found at i:32065836 original size:604 final size:607
Alignment explanation
Indices: 32063917--32069059 Score: 7175
Period size: 601 Copynumber: 8.5 Consensus size: 607
32063907 CGTTTAACTA
* * * * * *
32063917 CGGTGTATTAGTGGTGGCATGATCGCACTCGTCAACTCTTGCGCAATCTATTCACATAAAGGTTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* ** *
32063982 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGTAAATTCGACCAAATATTGTTTCAAATTAATT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
* *
32064047 ATTTCGCACAACACAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAATAT
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATAT
* * *
32064111 TATATGAAATAAAATGGGAAGGGTGAAACACGAGGACTTCCCAGGAGGTTACCCATCCTAGTACT
196 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* *
32064176 ACTCTCGCCCAAGCACGCTTAACTACGGAGTTTTGATAGGATCCGATGCATTAGTGCTGGTATGA
261 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGA
* * *
32064241 GCGCACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGACTGCCCCTTATCGCACTTGCACCTC
326 GCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTC
* * * * *
32064306 GAATTTGAAGGCAGATTCGACCAAAGATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACG
391 GAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG
* * **
32064371 AATGAGTTACACCACGTGGAGAAAATGTAACTAA-AAAAAA-TTTATATGAAATAAAATGGGATA
456 AATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAGG
* * *
32064434 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTGGTACTACTCTCGCCCAAGCAAGTTTA
521 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
*
32064499 ACTACGGCGTTTTGATTGGATC
586 ACTACGGCGTTTTGATAGGATC
*
32064521 CGGTGCATTAGTGCTGGTACGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* *
32064586 CCCCTTATCGCACTTGCGCCTCGAATTTGAATCCAAATTAGACCAAATATCATTTCAAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
* * *
32064651 ATTTCGCAAAACGCGAATAACGAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAACA
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATA
* * * * *
32064716 TTATATGAAATAAAGTGGGAGGGGTGCAACACGAGGGCTTCCTAGGTGGTCACCCATCCTAGGAC
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * * * *
32064781 TACTCTCGCCCTAGCACGCTTAACTTCGGCGTTTTGATCGGAACCGGTGCATTAGTGCTGATATG
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATG
* * * * * *
32064846 ATCGCACCTGTCAACTCTTGCGCAATGTATTCATATAAAGGCTGCCCCTTATCGTACTTTCGCCA
325 AGCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCT
*
32064911 CGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
390 CGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
* * *
32064976 GAATGAGTTACACCACGTGGAGAAAATGCAACTAATAAAAAACATTAAATGAAATAAAGTGGGAG
455 GAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAG
* * * *
32065041 GGGTGCAACACGAGGACTTCCCAGGACGTCAGCCATCCTAGTACTAGTCTCTCCCAAGCACGCTT
520 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
32065106 AACTACGGCGTTTTGATAGGATC
585 AACTACGGCGTTTTGATAGGATC
*
32065129 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCACATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * *
32065194 CCCCTTATCGCACTTGCGCCTCGACTTTGAATGCAAATTTGGCCAAATATCTTTTCTAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
* * * * *
32065259 ATTTCACACAACACAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAGAAATAC
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATAT
** * * *
32065324 TACCTGAAATAAAATGGGAGGGGTGCAACAGGATGACTTCCCAGGAGGTCACCCATCCTAGTACA
196 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * * * *
32065389 ACTCACGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA
261 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGA
* ** * * *
32065454 GCACAGTCGTCAGCTCTTGCGCAATCTATTCATATAGAGGCTG-CCCTTATCGCACTAGCGCCTC
326 GCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTC
* *
32065518 GAATTTGAAGGCAAATTCGACCAAATATCGTTT-AAATTTATTTATTTTGCAAAACGCAAATAAC
391 GAATTTGAATGCAAATTCGACCAAATATCGTTTCAAA-TTATTTATTTCGCAAAACGCAAATAAC
* *
32065582 GAATGAGTTACACCACGTGGAGAAAATGCAACT-A-AAAAAATATTATACGAAATAAAATGGGAG
455 GAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAG
* * * * *
32065645 GGGTGCAACACGATGAGTTCCCAGGAGGTCACCCATCCAAGTATTACTCTCGCCCAAGCAAGCTT
520 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
* * * * *
32065710 AAATGCGGAGTTCTGATGGGATC
585 AACTACGGCGTTTTGATAGGATC
* * * ** * * *
32065733 AGGTGCATTAGTACTGTTATGAGAGCAACCGTCAACTTTTGCGCAATCTAATCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * *
32065798 CCTCTTATCACACTTTCGCCTCGAATTTGAAAGCAAATTCGACCAAATATCATTTCAATTTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
*
32065863 ATTTTC-CAAAACGTAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATA
131 A-TTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATA
*
32065927 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC-GGAGGTCACCCATCCTAGTAA
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * *
32065991 TACTCTCGGCCAAGCACGTTTAACTACGGTGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATG
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATG
* *
32066056 ATCGCACTCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCT
325 AGCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCT
* * *
32066121 CGAATTTGAATGCAAATTCGACCAAATATCATTTCAATTTATTTATTTTC-CAAAACGTAAATAA
390 CGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTA-TTTCGCAAAACGCAAATAA
*
32066185 CGAATGAGTTACTCCACGTGGAGAAAATGCAACT-A-AAAAAACATTATATGAAATAAAATGGGA
454 CGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGA
* * * *
32066248 GGGGTGAAACACTAGGATTTCCC-GCGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGCACGC
519 GGGGTGCAACACGAGGACTTCCCAG-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * * *
32066312 TTGACTGCGGAGTTCTGATGGGATC
583 TTAACTACGGCGTTTTGATAGGATC
*
32066337 CGGTGCATTAGTGCTGGTATGAGT-GCACCCGTCAACACTTGCGCAATCTATTCATATAAAGGCT
1 CGGTGCATTAGTGCTGGTATGA-TCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
* *
32066401 GCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTATT
65 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATT
** * *
32066466 TATTTTACAAAACACAAATAACGAATGAGTTACACCACGTGGATAAAATG-ACACTAAAAAAAAT
130 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA-ACTAAAAAAAAT
* *
32066530 ATTATATGAAATAAAATGGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCGAGTA
194 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
* * * * * * * * *
32066595 CTACTCTC-CCGCAAGCACTCTTACCTGCAGTGTTCTGATGGGATACGGTGCATTAGTGCTTGTA
259 CTACTCTCGCC-CAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTA
* * *
32066659 TAAGCGCACCCTTCAACTTTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGC
323 TGAGCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGC
* *
32066724 CTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAATA
388 CTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATA
* * *
32066789 ACGAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAACATTATATTAAATAAAAT-AG
453 ACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGG
* * * *
32066853 -GGGGTG---CACGAGGACTT-CCAGGAGGTCGCCCACCCTAGTAATCCTCTCGCCCAAGCACGC
518 AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * *
32066913 TTAATTGCGGCG-TTTGAATGGGATT
583 TTAACTACGGCGTTTTG-ATAGGATC
* *
32066938 CGGTGCATTAGTGCTGGTATGATCGTACCCGTCATCTCTTGCGCAATCTATTCATATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * * *
32067003 CCCCTTATCGCAATTGCGCCTCGAATTTGAAGGCAAACTCGACCAAATATCGTTTGAATTTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
* * * *
32067068 ATTTTGCAAGACGCAAATAACGAATGAGTTGCACCACGTTGAGAAAATGCAACTAAAAAAAATAT
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATAT
*
32067133 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTATT
196 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * * * * * * *
32067198 ACTCTCTCCCAAGCACGCTTAGCTGCGGAGTTCTGATGGGATCCGGTACATTAGTACTGGTATGA
261 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGA
* * *
32067263 GCGCACCCGTGAACT-TTTCTGCAATCTATTCATATAAAGGCTGCCCCATATCGCACTTGCGCCT
326 GCGCACCCGTCAACTCTTGC-GCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCT
* *
32067327 CGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAATAAC
390 CGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
* * *
32067392 GAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAACATTATATTAAATAAAAT-AG-G
455 GAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAG
* *
32067455 GGGTG---CACGAGGACTT-CCAGGAGGTCACCCATCCTAGTACTACTATCACCCAAGCACGCTT
520 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
32067516 AACTACGGCGTTTTGATAGGATC
585 AACTACGGCGTTTTGATAGGATC
* * * **
32067539 CGGTGTATTAGTGCTGGTATGATCGCGCCCGTCAACTCTTGCGGAATCTATTCCCATAAAGGCTG
1 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * *
32067604 CCCCTTATCGCACTTGCGCCTCGACTTTGAATGCAAATTTGACCAAATATCGTTTCAAATTATTT
66 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
*
32067669 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACA
131 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATA
* * * * *
32067734 TTAAATGAAATAAAGTGGGAGGGGTGCAACACGAGGACTTCGCAGGAGGTCACACATCCTAGGAC
195 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * * * *
32067799 TACTCTCGCCCTAGCACGCTTAACTATGGCGTTTTGATCGGATCCGGTGCATTAGTGCAGATATG
260 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATG
* * * * *
32067864 ATCGCACCCGTCAACTCTTGCGCAATGTATTCATATAAAGGCTACCCCTTATCGAACTTTCGCCT
325 AGCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCT
*
32067929 CGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
390 CGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
* *
32067994 GAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTAAATGAAATAAAGTGGGAG
455 GAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAG
* *
32068059 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGTTT
520 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
32068124 AACTACGGCGTTTTGATAGGATC
585 AACTACGGCGTTTTGATAGGATC
* * *
32068147 CGGTGCATTAGTGTTGGTAAT-ATCTCACCCGTCAACTCTTGGGCAATCTATTCATATAAAGGCT
1 CGGTGCATTAGTGCTGGT-ATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
* * * *
32068211 GCCCCTTATCGCAGTTGCGCCTCGAATTTTAATGCAAATTCGACTAAATATCGTTTCAAATTATT
65 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATT
* *
32068276 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGATAAAATGCAACTAACAAAAAAC
130 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAAT
** *
32068341 ATTATATGAAATAATGTGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATCCTAGTA
194 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
*
32068406 CTACAT-TCACCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTA--G-TGGTA
259 CTAC-TCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTA
* * * ** * * *
32068467 TGATCGCACCTGTCAACTAC-TGCGCAATCGATTGGTATAGAGCCTGCCCCTTATCGCACTTCCG
323 TGAGCGCACCCGTCAACT-CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCG
* * * * * *
32068531 CCTCGAATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTATTTATTTTGCAAGACACAAAT
387 CCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAAT
* * * * *
32068596 AACAAAAGAGTTGCACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAGTGG
452 AACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGG
* * * * **
32068660 GAGGGGTGCAAGACGAGGACTTCGCAGGAGGTCACACATCCTAGGACTACTCTCGCCTTAGCACG
517 GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
*
32068725 CTTAACTACGGCGTTTTGATCGGATC
582 CTTAACTACGGCGTTTTGATAGGATC
* * ** * *
32068751 CGGTGCATTA--G-TGGTATGATCGC-CCCTGTCAACTAC-TGCGCGATCGATTGGTATAGAGCC
1 CGGTGCATTAGTGCTGGTATGATCGCACCC-GTCAACT-CTTGCGCAATCTATTCATATAAAGGC
* * * *
32068811 TGCCCCTTATCGCACTTCCGCCTCGCATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTAT
64 TGCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTAT
* * * * * *
32068876 TTATTTTGCAAGACACAAATAACAAAAGAGTTGCACCACGTGGAGAAAATGCAACTAACAAAAAA
129 TTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAA
* * * * * *
32068941 CATTATATGAAATAAAGTGGGAGGGGTGCAAGACGAGGACTTCGCAGGAGGTCACACATCCTAGG
193 TATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGT
** *
32069006 ACTACTCTCGCCTTAGCACGCTTAACTACGGCGTTTTGATCGGATCCGGTGCAT
258 ACTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCAT
32069060 NNNNNNNNNN
Statistics
Matches: 4072, Mismatches: 427, Indels: 83
0.89 0.09 0.02
Matches are distributed among these distances:
600 13 0.00
601 1020 0.25
602 311 0.08
603 125 0.03
604 1018 0.25
605 386 0.09
606 382 0.09
607 193 0.05
608 621 0.15
609 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (607 bp):
CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATAT
TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATGA
GCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTC
GAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG
AATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAGG
GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
ACTACGGCGTTTTGATAGGATC
Found at i:32069026 original size:601 final size:604
Alignment explanation
Indices: 32063917--32069059 Score: 6981
Period size: 604 Copynumber: 8.5 Consensus size: 604
32063907 CGTTTAACTA
* * * * * *
32063917 CGGTGTATTAGTGGTGGCATGATCGCACTCGTCAACTCTTGCGCAATCTATTCACATAAAGGTTG
1 CGGTGCATTAG-GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* ** *
32063982 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGTAAATTCGACCAAATATTGTTTCAAATTAATT
65 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
* *
32064047 ATTTCGCACAACACAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAATAT
130 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATAT
* * *
32064111 TATATGAAATAAAATGGGAAGGGTGAAACACGAGGACTTCCCAGGAGGTTACCCATCCTAGTACT
195 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* *
32064176 ACTCTCGCCCAAGCACGCTTAACTACGGAGTTTTGATAGGATCCGATGCATTAGTGCTGGTATGA
260 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTA--GCTGGTATGA
* * * * *
32064241 GCGCACCCGTCAACTCTTGCGCAATCTATTCATTTAAAGACTGCCCCTTATCGCACTTGCACCTC
323 TCGCACCTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTC
* * * * *
32064306 GAATTTGAAGGCAGATTCGACCAAAGATCGTTTCAATTTATTTATTTTGCAAAACGCAAATAACG
388 GAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACG
* * **
32064371 AATGAGTTACACCACGTGGAGAAAATGTAACTAA-AAAAAA-TTTATATGAAATAAAATGGGATA
453 AATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAGG
* * *
32064434 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTGGTACTACTCTCGCCCAAGCAAGTTTA
518 GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTA
*
32064499 ACTACGGCGTTTTGATTGGATC
583 ACTACGGCGTTTTGATAGGATC
*
32064521 CGGTGCATTAGTGCTGGTACGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
1 CGGTGCATTAG-GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* *
32064586 CCCCTTATCGCACTTGCGCCTCGAATTTGAATCCAAATTAGACCAAATATCATTTCAAATTATTT
65 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
* * *
32064651 ATTTCGCAAAACGCGAATAACGAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAACA
130 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATA
* * * * *
32064716 TTATATGAAATAAAGTGGGAGGGGTGCAACACGAGGGCTTCCTAGGTGGTCACCCATCCTAGGAC
194 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * * * *
32064781 TACTCTCGCCCTAGCACGCTTAACTTCGGCGTTTTGATCGGAACCGGTGCATTAGTGCTGATATG
259 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTA--GCTGGTATG
* * * *
32064846 ATCGCACCTGTCAACTCTTGCGCAATGTATTCATATAAAGGCTGCCCCTTATCGTACTTTCGCCA
322 ATCGCACCTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCT
*
32064911 CGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
387 CGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
* * *
32064976 GAATGAGTTACACCACGTGGAGAAAATGCAACTAATAAAAAACATTAAATGAAATAAAGTGGGAG
452 GAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAG
* * * *
32065041 GGGTGCAACACGAGGACTTCCCAGGACGTCAGCCATCCTAGTACTAGTCTCTCCCAAGCACGCTT
517 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
32065106 AACTACGGCGTTTTGATAGGATC
582 AACTACGGCGTTTTGATAGGATC
*
32065129 CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCACATAAAGGCTG
1 CGGTGCATTAG-GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * *
32065194 CCCCTTATCGCACTTGCGCCTCGACTTTGAATGCAAATTTGGCCAAATATCTTTTCTAATTATTT
65 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
* * * * *
32065259 ATTTCACACAACACAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAGAAATAC
130 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATAT
** * * *
32065324 TACCTGAAATAAAATGGGAGGGGTGCAACAGGATGACTTCCCAGGAGGTCACCCATCCTAGTACA
195 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * * * *
32065389 ACTCACGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA
260 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTA--GCTGGTATGA
* * * *
32065454 --GCACAGTCGTCAGCTCTTGCGCAATCTATTCATATAGAGGCTG-CCCTTATCGCACTAGCGCC
323 TCGCAC-CT-GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCC
* *
32065516 TCGAATTTGAAGGCAAATTCGACCAAATATCGTTT-AAATTTATTTATTTTGCAAAACGCAAATA
386 TCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAA-TTATTTATTTCGCAAAACGCAAATA
* *
32065580 ACGAATGAGTTACACCACGTGGAGAAAATGCAACT-A-AAAAAATATTATACGAAATAAAATGGG
450 ACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGG
* * * * *
32065643 AGGGGTGCAACACGATGAGTTCCCAGGAGGTCACCCATCCAAGTATTACTCTCGCCCAAGCAAGC
515 AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC
* * * * *
32065708 TTAAATGCGGAGTTCTGATGGGATC
580 TTAACTACGGCGTTTTGATAGGATC
* * * ** * * *
32065733 AGGTGCATTAGTACTGTTATGAGAGCAACCGTCAACTTTTGCGCAATCTAATCATATAAAGGCTG
1 CGGTGCATTAG-GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * *
32065798 CCTCTTATCACACTTTCGCCTCGAATTTGAAAGCAAATTCGACCAAATATCATTTCAATTTATTT
65 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
*
32065863 ATTTTC-CAAAACGTAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATA
130 A-TTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATA
*
32065927 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC-GGAGGTCACCCATCCTAGTAA
194 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * *
32065991 TACTCTCGGCCAAGCACGTTTAACTACGGTGTTTTGATAGGATCCGGTGCATTAGTGCTGGTATG
259 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTA--GCTGGTATG
32066056 ATCGCA-CTCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCC
322 ATCGCACCT-GTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCC
* * *
32066120 TCGAATTTGAATGCAAATTCGACCAAATATCATTTCAATTTATTTATTTTC-CAAAACGTAAATA
386 TCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTA-TTTCGCAAAACGCAAATA
*
32066184 ACGAATGAGTTACTCCACGTGGAGAAAATGCAACT-A-AAAAAACATTATATGAAATAAAATGGG
450 ACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGG
* * * *
32066247 AGGGGTGAAACACTAGGATTTCCC-GCGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGCACG
515 AGGGGTGCAACACGAGGACTTCCCAG-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * * *
32066311 CTTGACTGCGGAGTTCTGATGGGATC
579 CTTAACTACGGCGTTTTGATAGGATC
*
32066337 CGGTGCATTAGTGCTGGTATGAGT-GCACCCGTCAACACTTGCGCAATCTATTCATATAAAGGCT
1 CGGTGCATTAG-GCTGGTATGA-TCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
* *
32066401 GCCCCTTATCGCACTTGCGCCTCGAATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTATT
64 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATT
** * *
32066466 TATTTTACAAAACACAAATAACGAATGAGTTACACCACGTGGATAAAATG-ACACTAAAAAAAAT
129 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCA-ACTAAAAAAAAT
* *
32066530 ATTATATGAAATAAAATGGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCGAGTA
193 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
* * * * * * * * *
32066595 CTACTCTC-CCGCAAGCACTCTTACCTGCAGTGTTCTGATGGGATACGGTGCATTAGTGCTTGTA
258 CTACTCTCGCC-CAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTA--GCTGGTA
* * *
32066659 TAAGCGCACCCT-TCAACTTTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCG
320 TGATCGCA-CCTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCG
* *
32066723 CCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAAT
384 CCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAAT
* * *
32066788 AACGAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAACATTATATTAAATAAAAT-A
449 AACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGG
* * * *
32066852 G-GGGGTG---CACGAGGACTT-CCAGGAGGTCGCCCACCCTAGTAATCCTCTCGCCCAAGCACG
514 GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACG
* * * *
32066912 CTTAATTGCGGCG-TTTGAATGGGATT
579 CTTAACTACGGCGTTTTG-ATAGGATC
* *
32066938 CGGTGCATTAGTGCTGGTATGATCGTACCCGTCATCTCTTGCGCAATCTATTCATATAAAGGCTG
1 CGGTGCATTAG-GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * * * * *
32067003 CCCCTTATCGCAATTGCGCCTCGAATTTGAAGGCAAACTCGACCAAATATCGTTTGAATTTATTT
65 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
* * * *
32067068 ATTTTGCAAGACGCAAATAACGAATGAGTTGCACCACGTTGAGAAAATGCAACTAAAAAAAATAT
130 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATAT
*
32067133 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTATT
195 TATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACT
* * * * * * *
32067198 ACTCTCTCCCAAGCACGCTTAGCTGCGGAGTTCTGATGGGATCCGGTACATTAGTACTGGTATGA
260 ACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAG--CTGGTATGA
* * * * *
32067263 GCGCACCCGTGAACT-TTTCTGCAATCTATTCATATAAAGGCTGCCCCATATCGCACTTGCGCCT
323 TCGCACCTGTCAACTCTTGC-GCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCT
* *
32067327 CGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCATAACGCAAATAAC
387 CGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAAC
* * *
32067392 GAATGAGTTACACCACGTGGAGAAAATGCTACTAACAAAAAACATTATATTAAATAAAAT-AG-G
452 GAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAG
* *
32067455 GGGTG---CACGAGGACTT-CCAGGAGGTCACCCATCCTAGTACTACTATCACCCAAGCACGCTT
517 GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT
32067516 AACTACGGCGTTTTGATAGGATC
582 AACTACGGCGTTTTGATAGGATC
* * * **
32067539 CGGTGTATTAGTGCTGGTATGATCGCGCCCGTCAACTCTTGCGGAATCTATTCCCATAAAGGCTG
1 CGGTGCATTAG-GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG
* * *
32067604 CCCCTTATCGCACTTGCGCCTCGACTTTGAATGCAAATTTGACCAAATATCGTTTCAAATTATTT
65 CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTT
*
32067669 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACA
130 ATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATA
* * * * *
32067734 TTAAATGAAATAAAGTGGGAGGGGTGCAACACGAGGACTTCGCAGGAGGTCACACATCCTAGGAC
194 TTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * *
32067799 TACTCTCGCCCTAGCACGCTTAACTATGGCGTTTTGATCGGATCCGGTGCATTAG-TGCAGATAT
259 TACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGCTG--G-TAT
* * * * *
32067863 GATCGCACCCGTCAACTCTTGCGCAATGTATTCATATAAAGGCTACCCCTTATCGAACTTTCGCC
321 GATCGCACCTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCC
*
32067928 TCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAA
386 TCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAA
* *
32067993 CGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTAAATGAAATAAAGTGGGA
451 CGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGA
* *
32068058 GGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGTT
516 GGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCT
32068123 TAACTACGGCGTTTTGATAGGATC
581 TAACTACGGCGTTTTGATAGGATC
* * *
32068147 CGGTGCATTAGTGTTGGTAAT-ATCTCACCCGTCAACTCTTGGGCAATCTATTCATATAAAGGCT
1 CGGTGCATTAG-GCTGGT-ATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCT
* * * *
32068211 GCCCCTTATCGCAGTTGCGCCTCGAATTTTAATGCAAATTCGACTAAATATCGTTTCAAATTATT
64 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATT
* *
32068276 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGATAAAATGCAACTAACAAAAAAC
129 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAAT
** *
32068341 ATTATATGAAATAATGTGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATCCTAGTA
193 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
*
32068406 CTACAT-TCACCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAG-TGGTATG
258 CTAC-TCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGCTGGTATG
* ** * * *
32068469 ATCGCACCTGTCAACTAC-TGCGCAATCGATTGGTATAGAGCCTGCCCCTTATCGCACTTCCGCC
322 ATCGCACCTGTCAACT-CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCC
* * * * * *
32068533 TCGAATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTATTTATTTTGCAAGACACAAATAA
386 TCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAA
* * * * *
32068598 CAAAAGAGTTGCACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAGTGGGA
451 CGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGA
* * * * **
32068662 GGGGTGCAAGACGAGGACTTCGCAGGAGGTCACACATCCTAGGACTACTCTCGCCTTAGCACGCT
516 GGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCT
*
32068727 TAACTACGGCGTTTTGATCGGATC
581 TAACTACGGCGTTTTGATAGGATC
* * ** * *
32068751 CGGTGCATTA-G-TGGTATGATCGC-CCCTGTCAACTAC-TGCGCGATCGATTGGTATAGAGCCT
1 CGGTGCATTAGGCTGGTATGATCGCACCC-GTCAACT-CTTGCGCAATCTATTCATATAAAGGCT
* * * *
32068812 GCCCCTTATCGCACTTCCGCCTCGCATTTGAAGGCAAATTCGACCAAATATCATTTCAATTTATT
64 GCCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATT
* * * * * * *
32068877 TATTTTGCAAGACACAAATAACAAAAGAGTTGCACCACGTGGAGAAAATGCAACTAACAAAAAAC
129 TATTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAAT
* * * * *
32068942 ATTATATGAAATAAAGTGGGAGGGGTGCAAGACGAGGACTTCGCAGGAGGTCACACATCCTAGGA
193 ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTA
** *
32069007 CTACTCTCGCCTTAGCACGCTTAACTACGGCGTTTTGATCGGATCCGGTGCAT
258 CTACTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCAT
32069060 NNNNNNNNNN
Statistics
Matches: 4074, Mismatches: 413, Indels: 107
0.89 0.09 0.02
Matches are distributed among these distances:
599 3 0.00
600 15 0.00
601 1016 0.25
602 308 0.08
603 122 0.03
604 1018 0.25
605 390 0.10
606 383 0.09
607 192 0.05
608 624 0.15
609 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (604 bp):
CGGTGCATTAGGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGC
CCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCATTTCAAATTATTTA
TTTCGCAAAACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATT
ATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
CTCTCGCCCAAGCACGCTTAACTACGGCGTTTTGATAGGATCCGGTGCATTAGCTGGTATGATCG
CACCTGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAA
TTTGAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAAT
GAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAGGGGT
GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACT
ACGGCGTTTTGATAGGATC
Found at i:32092788 original size:303 final size:303
Alignment explanation
Indices: 32092229--32092859 Score: 799
Period size: 303 Copynumber: 2.1 Consensus size: 303
32092219 NNNNNNNNNN
* * * *
32092229 TGCAACACGAGGACTTCCTAAGAGGTCACCCATCCTAGTACAACTTTCGTCCAAGCACGCTTAAC
1 TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACAACTCTCGCCCAAACACGCTTAAC
* * * * * *
32092294 TGCGGAGTTTTGATGGGGTCAACTGCATTAGTGCTGGTGTGATCGCTCCCGTCAACTGTTGCGCA
66 TGCGGAGTTCTGATGGGATCAACTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCA
* * ** *
32092359 ATCTATTCATATAGAGGCTGCCCCTTATCGCACTTGCGCCTCGAAATTGAATGTAAATTCGACCA
131 ATCTACTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAAATTGAATGCAAATTCGACCA
** * * * * *
32092424 AATATCATTTCAAATTATTTATTTCGCACGACGCAAATCACGAATGTGTTACTCTACGTGGAGAA
196 AATATCATTTCAAATTATTTATTTCGCAAAACACAAATAACGAATGAGTTACACCACGTGGAGAA
** * *
32092489 AATGCA-ACTAA-AGGAAATATTATATGAAATAAAATGGGAGGGG
261 AATGCAGA-TAACAAAAAACATTATATGAAATAAAATAGGA-GGG
* * * * *
32092532 TGCAACACGATGG-CTTCCCAGGAGGTCATCCATCCTCGTACTACTCTCGCCCAAACACGCTTCA
1 TGCAACACGA-GGACTTCCCAAGAGGTCACCCATCCTAGTACAACTCTCGCCCAAACACGCTTAA
* * * *
32092596 GTGCGGAGTTCTGATGGGAT-ACCATGTATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGTG
65 CTGCGGAGTTCTGATGGGATCAAC-TGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCG
* * * *
32092660 CAATCTACTCATATAAAGGTTGCCCCTTATCGCAAATGCGCCTCGTATTTTAATGCAAATTCGAC
129 CAATCTACTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAAATTGAATGCAAATTCGAC
*
32092725 CAAATATCGTTTCAAATTATTTATTTCGCAAAACACAAATAACGAATGAGTTACACCACGTGGAG
194 CAAATATCATTTCAAATTATTTATTTCGCAAAACACAAATAACGAATGAGTTACACCACGTGGAG
32092790 AAAATGCAGATAACAAAAAACATTATATGAAATAAAATAGGAGGG
259 AAAATGCAGATAACAAAAAACATTATATGAAATAAAATAGGAGGG
* *
32092835 TG---CAGGAGGACTTCCCAGGAGGTCA
1 TGCAACACGAGGACTTCCCAAGAGGTCA
32092860 TGTGGGAGGG
Statistics
Matches: 282, Mismatches: 41, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
299 2 0.01
300 19 0.07
302 2 0.01
303 232 0.82
304 27 0.10
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (303 bp):
TGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACAACTCTCGCCCAAACACGCTTAAC
TGCGGAGTTCTGATGGGATCAACTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCA
ATCTACTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAAATTGAATGCAAATTCGACCA
AATATCATTTCAAATTATTTATTTCGCAAAACACAAATAACGAATGAGTTACACCACGTGGAGAA
AATGCAGATAACAAAAAACATTATATGAAATAAAATAGGAGGG
Found at i:32096193 original size:301 final size:303
Alignment explanation
Indices: 32095238--32102021 Score: 8769
Period size: 301 Copynumber: 22.5 Consensus size: 303
32095228 NNNNNNNNNN
32095238 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAGA-TAACAAAAAACATTATATGAAATAAAA
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCA-ACTAA-AAAAAACATTATATGAAATAAAA
* * * * * *
32095302 TAGGA-GGGT-C--CAGGAGGACTTCCCAGGAGGTCGCCCACCCTAGTAATCCTCTCGCCCAAGC
64 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * *
32095363 ACGCTTAACTGCGGCGTT-TGAATGGGATCCGGTGCATTACTGCTGGTGTGATCGCACCCGTCAA
129 ACGCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * *
32095427 CTCTTGCGTAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAAATTGAAGGCA
193 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCA
* ** *
32095492 AATTCCACCAAATATCGTTTCAAATTATTTATTTCGCACGACGTAA
258 AATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
** * ** *
32095538 ATCGCGAATGTGTTACACCACGTGGAGAAAATGCAACTAAAGGAAATATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * *
32095603 GGAGGGGTGCAACACGATGG-CTTCCTAGGAGGTCATCCATCCTCGTACTACTCTCGCCCAAACA
66 GGAGGGGTGCAACACGA-GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* *
32095667 CGCTTAACTGCGGAGTTCTGATGGGATACC-ATGTATTAGTGCTGGTATGATCGCACCCGTCAAC
130 CGCTTAACTGCGGAGTTCTGATGGGAT-CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * * ** * *
32095731 TCTTGTGCAATCTACTCATATAAAGGTTGCTCCTTATCGCAAATGCGCCTCGTATTTGAATGCAA
194 TCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAA
* *
32095796 ATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGTAA
259 ATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
*
32095841 ATAACGAATGAGTTACACCACGTGAAGAAAATGCAACT-AAAAAAA-ATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * * * * * * *
32095904 GGAGGGGTGCAATATGTGGACTTCCCAGAAGGTCACCCATACGAGTACTACTCTTGCCCAGGCGC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* ** * **
32095969 GCTTGACTGCATAGTTCTGATGGGATCTGGTGCATTAGTGCTGGTATGATCATACCCGTCAACTC
131 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * * *
32096034 TAGCGCAATCTATTAATATAAAGGCTG-CCCTTATCGCACTTGCGCCTCGAATTTGAACGCAAAT
196 TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAAT
* *
32096098 TCGA-CAAATATTGTTTCAAATTATTTATTTCGCAGAACGCAA
261 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
32096140 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * * *
32096205 GGATGGGTGCAACACGAGGGCTTCCCAGGATGTCACCCACCCTAGTAATACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * *
32096270 GCTTAACTGGGGCGTT-TGAATGGGATCCGGTGCATTATTGCTGGTATGATCGCACACGTCAACT
131 GCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * * * * *
32096334 CTTACGCAATCCATTCATATAACA-GCTGCCCCATATCGCACTTGCTCCTCTAATTTGACTGCAA
195 CTTGCGCAATCTATTCATATAA-AGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAA
* *
32096398 ATTCGACCAAATACCGTTTCAAATTATTTATTAT-GCAAAACGCAT
259 ATTCGACCAAATATCGTTTCAAATTATTTATT-TCGCAAAACGCAA
*
32096443 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * * *
32096508 GGAGGGATGCAACACAAGGACTTTCAAGGAGGTCACCCATCCTCGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
32096573 GCTTCAA-TG-GGAGTTCTGATGGGATCTGGTGCATTAGTGCTAGTATGATTGCACCCGTCAACT
131 GCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * * ** *
32096636 CTTGTGCTATCTATTCATATAAAGGTTGCCCCTTATTGCAAATGCGCCTCGAAGTTTAATGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
*
32096701 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAATGCAA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* * *
32096745 ATAACGAATCAGTTACACCACGTGAAGAAACTGCAAC-AAAAAAAA-ATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * * * * * *
32096808 GGAGGGGTGTAATACGAGGACCTT-CCAGGAGGTTACCTAGCCTAATAGTACTCTCGCCCAGGCA
66 GGAGGGGTGCAACACGAGGA-CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * **
32096872 CGCTTGACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTTGTATGATCGC-CGTAGTCAAC
130 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAC-CCGTCAAC
* * * * *
32096936 TCTTCCACAATCTATTCATATAAAGGCTGCCCCTTACCGCACTCGTGCCTCGAATTTTAATGCAA
194 TCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAA
* * *
32097001 ATTCGACCGAATATCGTTTCAAATTATTTATTTCGCATAACACAA
259 ATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
*
32097046 ATAACGAATGAGTTAGACCACGTGGAGAAAATGCAACTAAAAAAAAACATTATATGAAATAAAAT
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAAACATTATATGAAATAAAAT
*
32097111 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * ** * * *
32097176 CGCTTGACTGGGGAGTTCTGATGGGATCCGGTGCATTAGTGCTACTATGACCACACCTGTCAACT
130 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
*
32097241 CTTGCGCAATCTATTCATATAAAGGCTG------ATCGCACTTGCGCCTCGAATTTGAATGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
*
32097300 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCACAACGCAA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* ***
32097344 ATAACGAATGAGTTACACCACGTGGACAAAATGCAACTAAAAAATGTATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* *
32097409 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTCGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
32097474 GCTTCAA-TG-GGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTTTGATTGCACCCGTCAACT
131 GCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * * ** *
32097537 CTTGTGCTATCTATTCATATAAAGGTTACCCCTTATCGCAAATGCGCCTCGAAGTTTAATGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
32097602 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* * *
32097646 ATAACGAATCAGTTACACCACGTGAAGAAATTGCAAC-AAAAAAAA-ATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * ** * * * * * * * *
32097709 GGAGGGGTGTAATACGAGGACCACCCAGGAGGTTACCTAGCCTAATAGTACTCTCGTCCAGGTAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * **
32097774 GCTTGACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTTGTATGATCGCACTAGTCAACTC
131 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * * * *
32097839 TTCCACAACCTATTCATATAAAGGCTGCCCCTTATCGCACTCGTGCCTCGAATTTTAATGCAAAT
196 TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAAT
* * * *
32097904 TCGACCGAATATCGTTTCAAATTATTTATTTCGTATAACACAA
261 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* *
32097947 ATAACGAATGAGTTAGAACACGTGGAGAAAATGCAACTAAAAAAAAGCATTATATGAAATAAAAT
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAA-CATTATATGAAATAAAAT
* * *
32098012 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCCCGCCCAGGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * *
32098077 CGCTTGACTGGGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGTACCCGTCAACT
130 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * *
32098142 CTAGCGCAATCTATTAATATAAAGGCTG-CCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
* *
32098206 TTCGACCAAATATCGTTTCAAATTATTTATTTCACACAACGCAA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
**
32098250 ATAACGAATGAGTTAC-CCACGTGGAGAAAATGCAACTAAAAAAAGTATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* *
32098314 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTCGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* *
32098379 GCTTCAA-TGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTAGTATGCAT-GCACCCGTCAAC
131 GCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG-ATCGCACCCGTCAAC
* * **
32098442 TCTTGTC-CTATCTATTCATATAAAGGTTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCA
194 TCTTG-CGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCA
* * *
32098506 AATTCTACCAAATATCCTTTCAAATTATTTATTTCGTAAAACGCAA
258 AATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* * *
32098552 ATGACGAATGAGTTACACCA-----AGAAATTGCAACT-AAAAGAA-ATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * * *
32098610 GGAGGGGCGCAATACGAGTACTT-CCA--AGG------A----GGT--TA-TCTCGCCCAGGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * * *
32098659 GCTTAACTGCGGCGTT-TGAATGGGATCCGGTGCAGTAGTGCTTGTATGATCGCACCAGTAAACT
131 GCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * ** *
32098723 CTTCCGCAATCAATTCATATAAAGGCTGCCCCTTATCGCACTTATGCCTCGAATTTTATTGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
* * * * *
32098788 TTAGACCGAATGTCGTTTCAAATTATTTATTTCGCATAACACAA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* *
32098832 ATAATGAATGAGTTAGACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAAT
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAACATTATATGAAATAAAAT
*
32098897 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGGCCAAGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * *
32098962 CGTTTAACTGCGGCGTT-TGAATGCGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
130 CGCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * *
32099026 TCTTGCGCAATCTATTCATATAAAGGTTGGCGCAATCTATTCATATAAAGGTTGGCCCTTATCGC
194 TCTTGCGCAATCTATTCATATAAAGGCT-GC-C---C----C-T-T--A---TCGCACTT-GCGC
** ** * * * *
32099091 ACTTGCG-CCTCGAATTTCAATGCAAATTCGACCAAATATCATTTCAAATTATTTATTTCGCACA
242 -C-T-CGAATTTTAA-TGC-A---AAT-TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
32099155 ACGCAA
298 ACGCAA
* *
32099161 ATAACGAATGAGTTACACCACGTGAAGAAAATGCAACT-AAAAAAACATTATATGAAACAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * *
32099225 GGATGGGTGCAACACGAGGACTTCCCAGGATGTCACCCATACTAGTACTACTCTCGGCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* *
32099290 GTTTAACTGCGGCGTT-TGAATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
131 GCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
*
32099354 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTCAATGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
* * *
32099419 TTCGACCAAATATCATTTCAAATTATTTATTTCGCACAACGCGA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
*
32099463 ATAACGAATGAGTGACACCACGTGGAGAAAATGCAACT-AAAAAAACATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * * * *
32099527 GGATGGGTGCAACACGAAGACTTCCCAGGATGTCACCCATCCTCGTACTACTCTCACCTAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * *
32099592 GCTTGACTGCGGAGTTCAGATGGGATCCAGTGCATTAGTGCTGGTATGATCGTACCCGTCAACTC
131 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * * * *
32099657 TAGCGCAATCTATTAATATAAAGGCTG-CCCTTCTCGCACTTGCGCCTCAAATTTGAATGCAAAT
196 TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAAT
* ***
32099721 TCGACCAAATATTGTTTCAAATTATTTATAAGGCAAAACGCAA
261 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
*
32099764 ATAACGAATGAGTTAGACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAAT
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAACATTATATGAAATAAAAT
* *
32099829 GGGA-GGGTG---CACGAGGACTTCCCAGGAGGTCACCTATCCTAGTACTACACTCGCCCAAGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * *
32099890 CGCTTAACTGCGGAGTTCTGATGGGCTCCGGTGCATTAGTGCTGGTCTGAGCGCACCCGTCAACT
130 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * *
32099955 TTTGCACAATCTATTCATATAAAGGCTGCCCCTTATAGCACTTGCGCCTCGAATTTTAATGCATA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
* *
32100020 TTGGACCAAATATCGTTTCAAATTATTTATTTTGCAAAACGCAA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* *
32100064 ATAACAAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * *
32100129 GGAGGGGTGCAATACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAGGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * *
32100194 GCTTAACTGCGGAGTTCTGATGGGATACC-ATGCGTTAGTGCTAGTATCATCGCACCCGTCAACT
131 GCTTAACTGCGGAGTTCTGATGGGAT-CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * **
32100258 CTTGTGCAATCGATTCATATAAAGGTTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
* * *
32100323 TTGGACCAAATATCGTTTCAAAATATTTATTTCTCAAAACGCAA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* *
32100367 ATAACAAATGAGTTACACCACGTGGAAAAAATGCAACT-AAAAAAA-ATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * *
32100430 GGAGGGGTGCAATATGTGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAGGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * *
32100495 GTTTAACTGCGGAGTTCTGATGGGATACCATGTG--TTAGTGCTAGTATCATCGCACCCGTCAAC
131 GCTTAACTGCGGAGTTCTGATGGGAT-CC-GGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * ** *
32100558 TCTTGTGCAATCTATTCATATAAAGGTTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGTAA
194 TCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAA
32100623 ATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
259 ATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
*
32100668 ATAACGAATGAGTTACACCACGT-GATGAAAATGCAACT-AAAAAAA-ATTATATGAAATAAAAC
1 ATAACGAATGAGTTACACCACGTGGA-GAAAATGCAACTAAAAAAAACATTATATGAAATAAAAT
* * * **
32100730 GGGAGGGGTGCAATATGTGGACTTCCCAGGAGGTCACCCATCCTCCTACTACTCTCGCCCAAGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * *
32100795 CGCTTCAA-TGCGGAGTTCTGATGGGATACC-ATCCATTAGTGCTAGTATGATCGCACCCATCAA
130 CGCTT-AACTGCGGAGTTCTGATGGGAT-CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
* * * ** *
32100858 CTGTTGAGCAATCTACTCATATAAAGG-TGGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGT
193 CTCTTGCGCAATCTATTCATATAAAGGCT-GCCCCTTATCGCACTTGCGCCTCGAATTTTAATGC
32100922 AAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
257 AAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* *
32100969 ATAACGAATGAGTTACACCACGTGAAGAAAATGCAACT--AAAAAA-ATTATATGAAATAAAACG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * * * * * * * *
32101031 GGCGGGGTGCAATATGTGGACTTCCCAGGATGTCACCCACCCCAGTAATACTCTCGCCCGAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
32101096 GCTTAACTGCCGTGTT-TGAATGGGATCCGGTGCATTAGTGCTTGTATGATCGCACCCGTCAACT
131 GCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * * * * *
32101160 CTTGCGCAATCCATTCATATAACGGTTGCCCCATATTGCACTTGCGGCTCGAA-TTTGATAGCAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAAT-GCAA
* * *
32101224 ATGCGACCAAATACCGTTTCAAATTATTTATTTCGCAAAACGCAT
259 ATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* * *
32101269 ATAACGAATGAGTTACACCACGTGGAGAAAATGGAACTAAAAAAAATATTATATGAAATAAAAGG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* * *
32101334 GGAGGGGTGCAACACGAGGACTTTCTAGGAGGTCACCCATCCTCGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
32101399 GCTTCAA-TGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTAGTATGATTGCACCCGTCAACT
131 GCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * **
32101463 CTTGTGCTATCTATTCATATAAAGGCTACCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAA
* *
32101528 TTCGATCAAATATCGTTTCAAATTATTTATTTCACAAAACGCAA
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
32101572 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAAT
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAACATTATATGAAATAAAAT
* ** * * * *
32101637 GGGAGGGGGGCAACACGATCACTTCCCAGGGGGGCACCCATCTTGGTACTACTCTCGCCCAAGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * *
32101702 CGCTTCAA-TGCGGAGTTCTGATGGGATCCGATGCATGAGTGCTGGTATGATTGCCCCCGTCAAC
130 CGCTT-AACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * * **
32101766 TCTTGTGCTATCTATTCATATAAAGGCTACCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAA
194 TCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAA
* *
32101831 ATTCGATCAAATATCGTTTCAAAATTATTTATTTCGCACAACGCAA
259 ATTCGACCAAATATCGTTTC-AAATTATTTATTTCGCAAAACGCAA
* * * *
32101877 ATCACGAATGAGTTACTCCACGTGGAGAAAATGCAACTAAAAAAGATATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
** * * *
32101942 GGAGGGGTGCAACACGATCACTTCCCAGGGGGTCACCCATCTTGGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
32102007 GCTTCAA-TGCGGAGT
131 GCTT-AACTGCGGAGT
32102022 NNNNNNNNNN
Statistics
Matches: 5719, Mismatches: 633, Indels: 260
0.86 0.10 0.04
Matches are distributed among these distances:
279 7 0.00
280 169 0.03
281 2 0.00
283 2 0.00
285 12 0.00
286 1 0.00
287 6 0.00
288 38 0.01
289 3 0.00
291 3 0.00
293 3 0.00
295 3 0.00
296 110 0.02
297 98 0.02
298 117 0.02
299 264 0.05
300 604 0.11
301 1467 0.26
302 704 0.12
303 1002 0.18
304 740 0.13
305 64 0.01
306 2 0.00
307 4 0.00
308 4 0.00
309 2 0.00
310 3 0.00
311 6 0.00
313 1 0.00
314 2 0.00
315 1 0.00
316 1 0.00
317 2 0.00
318 1 0.00
320 6 0.00
321 2 0.00
322 2 0.00
323 3 0.00
324 4 0.00
325 2 0.00
326 2 0.00
327 175 0.03
328 3 0.00
329 72 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (303 bp):
ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAAT
TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
Found at i:32096901 original size:603 final size:605
Alignment explanation
Indices: 32095238--32102021 Score: 8854
Period size: 603 Copynumber: 11.2 Consensus size: 605
32095228 NNNNNNNNNN
*
32095238 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAGA-TAACAAAAAACATTATATGAAATAAAA
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCA-ACTAA-AAAAAATATTATATGAAATAAAA
* * * * * *
32095302 TAGGA-GGGT-C--CAGGAGGACTTCCCAGGAGGTCGCCCACCCTAGTAATCCTCTCGCCCAAGC
64 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * *
32095363 ACGCTT-AACTGCGGCGTT-TGAATGGGATCCGGTGCATTACTGCTGGTGTGATCGCACCCGTCA
129 ACGCTTCAA-TGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCA
* ** * * *
32095426 ACTCTTGCGTAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAAATTGAAGGC
192 ACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGC
* ** * ** *
32095491 AAATTCCACCAAATATCGTTTCAAATTATTTATTTCGCACGACGTAAATCGCGAATGTGTTACAC
257 AAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACAC
* *
32095556 CACGTGGAGAAAATGCAACTAAAGGAAATATTATATGAAATAAAATGGGAGGGGTGCAACACGAT
322 CACGTGGAGAAAATGCAACTAAA-AAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGA-
* * * *
32095621 GG-CTTCCTAGGAGGTCATCCATCCTCGTACTACTCTCGCCCAAACACGCTTAACTGCGGAGTTC
385 GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
* * * *
32095685 TGATGGGATACC-ATGTATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGTGCAATCTACTCA
450 TGATGGGAT-CCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCA
* * ** * *
32095749 TATAAAGGTTGCTCCTTATCGCAAATGCGCCTCGTATTTGAATGCAAATTCGACCAAATATCGTT
514 TATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTT
* *
32095814 TCAAATTATTTATTTCACAAAACGTAA
579 TCAAATTATTTATTTCGCAAAACGCAA
*
32095841 ATAACGAATGAGTTACACCACGTGAAGAAAATGCAACT-AAAAAAA-ATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
* * * * * * * * *
32095904 GGAGGGGTGCAATATGTGGACTTCCCAGAAGGTCACCCATACGAGTACTACTCTTGCCCAGGCGC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * ** * * **
32095969 GCTTGACTGCATAGTTCTGATGGGATCTGGTGCATTAGTGCTGGTATGATCATACCCGTCAACTC
131 GCTTCAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTC
* * ** * *
32096034 TAGCGCAATCTATTAATATAAAGGCTG-CCCTTATCGCACTTGCGCCTCGAATTTGAACGCAAAT
196 TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAAT
* *
32096098 TCGA-CAAATATTGTTTCAAATTATTTATTTCGCAGAACGCAAATAACGAATGAGTTACACCACG
261 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACG
* *
32096162 TGGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATGGGATGGGTGCAACACGAGGGCT
326 TGGAGAAAATGCAACTAAAAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACT
* * * * *
32096227 TCCCAGGATGTCACCCACCCTAGTAATACTCTCGCCCAAGCACGCTTAACTGGGGCGTT-TGAAT
390 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-AT
* * * *
32096291 GGGATCCGGTGCATTATTGCTGGTATGATCGCACACGTCAACTCTTACGCAATCCATTCATATAA
454 GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAA
* * * * * *
32096356 CA-GCTGCCCCATATCGCACTTGCTCCTCTAATTTGACTGCAAATTCGACCAAATACCGTTTCAA
519 -AGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAA
*
32096420 ATTATTTATTAT-GCAAAACGCAT
583 ATTATTTATT-TCGCAAAACGCAA
32096443 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
* * * * *
32096508 GGAGGGATGCAACACAAGGACTTTCAAGGAGGTCACCCATCCTCGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* *
32096573 GCTTCAATG-GGAGTTCTGATGGGATCTGGTGCATTAGTGCTAGTATGATTGCACCCGTCAACTC
131 GCTTCAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTC
* * * * *
32096637 TTGTGCTATCTATTCATATAAAGGTTGCCCCTTATTGCAAATGCGCCTCGAAGTTTAATGCAAAT
196 TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAAT
* *
32096702 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAATGCAAATAACGAATCAGTTACACCACG
261 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACG
* * * *
32096767 TGAAGAAACTGCAAC-AAAAAAAAATTATATGAAATAAAATGGGAGGGGTGTAATACGAGGACCT
326 TGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA-CT
* * * * * * * *
32096831 T-CCAGGAGGTTACCTAGCCTAATAGTACTCTCGCCCAGGCACGCTTGACTGCGGAGTTCTAATG
390 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* ** * *
32096895 GGATCCGGTGCATTAGTGCTTGTATGATCGC-CGTAGTCAACTCTTCCACAATCTATTCATATAA
455 GGATCCGGTGCATTAGTGCTGGTATGATCGCAC-CCGTCAACTCTTGCGCAATCTATTCATATAA
* * * *
32096959 AGGCTGCCCCTTACCGCACTCGTGCCTCGAATTTTAATGCAAATTCGACCGAATATCGTTTCAAA
519 AGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAA
* *
32097024 TTATTTATTTCGCATAACACAA
584 TTATTTATTTCGCAAAACGCAA
* *
32097046 ATAACGAATGAGTTAGACCACGTGGAGAAAATGCAACTAAAAAAAAACATTATATGAAATAAAAT
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACT-AAAAAAAATATTATATGAAATAAAAT
*
32097111 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * * * *
32097176 CGCTTGACTGGGGAGTTCTGATGGGATCCGGTGCATTAGTGCTACTATGACCACACCTGTCAACT
130 CGCTTCAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACT
** *
32097241 CTTGCGCAATCTATTCATATAAAGGCTG------ATCGCACTTGCGCCTCGAATTTGAATGCAAA
195 CTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAA
*
32097300 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCACAACGCAAATAACGAATGAGTTACACCAC
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCAC
* **
32097365 GTGGACAAAATGCAACTAAAAAATGTATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGAC
325 GTGGAGAAAATGCAACTAAAAAA-AAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGAC
* *
32097430 TTCCCAAGAGGTCACCCATCCTCGTACTACTCTCGCCCAAGCACGCTTCAA-TG-GGAGTTCTGA
389 TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGA
* * * * *
32097493 TGGGATCCGGTGCATTAGTGCTAGTTTGATTGCACCCGTCAACTCTTGTGCTATCTATTCATATA
453 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
* * ** *
32097558 AAGGTTACCCCTTATCGCAAATGCGCCTCGAAGTTTAATGCAAATTCGACCAAATATCGTTTCAA
518 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAA
32097623 ATTATTTATTTCGCAAAACGCAA
583 ATTATTTATTTCGCAAAACGCAA
* * *
32097646 ATAACGAATCAGTTACACCACGTGAAGAAATTGCAAC-AAAAAAAA-ATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
* * ** * * * * * * * *
32097709 GGAGGGGTGTAATACGAGGACCACCCAGGAGGTTACCTAGCCTAATAGTACTCTCGTCCAGGTAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * * **
32097774 GCTTGACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTTGTATGATCGCACTAGTCAACTC
131 GCTTCAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTC
* * * * *
32097839 TTCCACAACCTATTCATATAAAGGCTGCCCCTTATCGC-ACTCGTGCCTCGAATTTTAATGCAAA
196 TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAAT-GCGCCTCGAATTTTAATGCAAA
* * * * * *
32097903 TTCGACCGAATATCGTTTCAAATTATTTATTTCGTATAACACAAATAACGAATGAGTTAGAACAC
260 TTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCAC
32097968 GTGGAGAAAATGCAACTAAAAAAAAGCATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
325 GTGGAGAAAATGCAACTAAAAAAAA--ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
* * * * *
32098033 CTTCCCAGGAGATCACCCATCCTAGTACTACTCCCGCCCAGGCACGCTTGACTGGGGAGTTCTGA
388 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
* * *
32098098 TGGGATCCGGTGCATTAGTGCTGGTATGATCGTACCCGTCAACTCTAGCGCAATCTATTAATATA
453 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
*
32098163 AAGGCTG-CCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAATATCGTTTCAA
518 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAA
* *
32098227 ATTATTTATTTCACACAACGCAA
583 ATTATTTATTTCGCAAAACGCAA
*
32098250 ATAACGAATGAGTTAC-CCACGTGGAGAAAATGCAACTAAAAAAAGTATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
* *
32098314 GGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTCGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
*
32098379 GCTTCAATGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTAGTATGCAT-GCACCCGTCAACT
131 GCTTCAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATG-ATCGCACCCGTCAACT
* *
32098443 CTTGTC-CTATCTATTCATATAAAGGTTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAA
195 CTTG-CGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAA
* * * *
32098507 ATTCTACCAAATATCCTTTCAAATTATTTATTTCGTAAAACGCAAATGACGAATGAGTTACACCA
259 ATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCA
* * * * *
32098572 -----AGAAATTGCAACT-AAAAGAAATTATATGAAATAAAATGGGAGGGGCGCAATACGAGTAC
324 CGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGAC
* * *
32098631 TT-CCA--AGG------A----GGT--TA-TCTCGCCCAGGCACGCTTAACTGCGGCGTT-TGAA
389 TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-A
* * * * * *
32098679 TGGGATCCGGTGCAGTAGTGCTTGTATGATCGCACCAGTAAACTCTTCCGCAATCAATTCATATA
453 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
** * * * *
32098744 AAGGCTGCCCCTTATCGCACTTATGCCTCGAATTTTATTGCAAATTAGACCGAATGTCGTTTCAA
518 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAA
* *
32098809 ATTATTTATTTCGCATAACACAA
583 ATTATTTATTTCGCAAAACGCAA
* * *
32098832 ATAATGAATGAGTTAGACCACGTGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAAT
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAA-AAAAAATATTATATGAAATAAAAT
*
32098897 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGGCCAAGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * *
32098962 CG-TTTAACTGCGGCGTT-TGAATGCGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
130 CGCTTCAA-TGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAA
*
32099025 CTCTTGCGCAATCTATTCATATAAAGGTTGGCGCAATCTATTCATATAAAGGTTGGCCCTTATCG
193 CTCTTGCGCAATCTATTCATATAAA-----G-G---------C----------TGCCCCTTATCG
** * * *
32099090 CACTTGCGCCTCGAATTTCAATGCAAATTCGACCAAATATCATTTCAAATTATTTATTTCGCACA
233 CAAATGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAA
* * *
32099155 ACGCAAATAACGAATGAGTTACACCACGTGAAGAAAATGCAACTAAAAAAACATTATATGAAACA
298 ACGCAAATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATA
* * * *
32099220 AAATGGGATGGGTGCAACACGAGGACTTCCCAGGATGTCACCCATACTAGTACTACTCTCGGCCA
363 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* *
32099285 AGCACGTTTAACTGCGGCGTT-TGAATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
428 AGCACGCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
*
32099349 CAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTCAAT
492 CAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAAT
* * *
32099414 GCAAATTCGACCAAATATCATTTCAAATTATTTATTTCGCACAACGCGA
557 GCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAA
* *
32099463 ATAACGAATGAGTGACACCACGTGGAGAAAATGCAACT-AAAAAAACATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
* * * * * *
32099527 GGATGGGTGCAACACGAAGACTTCCCAGGATGTCACCCATCCTCGTACTACTCTCACCTAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * * * * *
32099592 GCTTGACTGCGGAGTTCAGATGGGATCCAGTGCATTAGTGCTGGTATGATCGTACCCGTCAACTC
131 GCTTCAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTC
* * * ** * *
32099657 TAGCGCAATCTATTAATATAAAGGCTG-CCCTTCTCGCACTTGCGCCTCAAATTTGAATGCAAAT
196 TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAAT
* *** *
32099721 TCGACCAAATATTGTTTCAAATTATTTATAAGGCAAAACGCAAATAACGAATGAGTTAGACCACG
261 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACG
32099786 TGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGA-GGGTG---CACGAGGAC
326 TGGAGAAAATGCAACTAA-AAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGAC
* *
32099847 TTCCCAGGAGGTCACCTATCCTAGTACTACACTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAT
389 TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAT
* * * * *
32099912 GGGCTCCGGTGCATTAGTGCTGGTCTGAGCGCACCCGTCAACTTTTGCACAATCTATTCATATAA
454 GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAA
* * *
32099977 AGGCTGCCCCTTATAGCACTTGCGCCTCGAATTTTAATGCATATTGGACCAAATATCGTTTCAAA
519 AGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAA
*
32100042 TTATTTATTTTGCAAAACGCAA
584 TTATTTATTTCGCAAAACGCAA
*
32100064 ATAACAAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
* * *
32100129 GGAGGGGTGCAATACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAGGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
32100194 GCTT-AACTGCGGAGTTCTGATGGGATACC-ATGCGTTAGTGCTAGTATCATCGCACCCGTCAAC
131 GCTTCAA-TGCGGAGTTCTGATGGGAT-CCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAAC
* * *
32100257 TCTTGTGCAATCGATTCATATAAAGGTTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAA
194 TCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAA
* * * *
32100322 ATTGGACCAAATATCGTTTCAAAATATTTATTTCTCAAAACGCAAATAACAAATGAGTTACACCA
259 ATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCA
* * * *
32100387 CGTGGAAAAAATGCAACT-AAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAATATGTGGAC
324 CGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGAC
* *
32100451 TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAGGCACGTTTAACTGCGGAGTTCTGAT
389 TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAT
* * * *
32100516 GGGATACCATGTG--TTAGTGCTAGTATCATCGCACCCGTCAACTCTTGTGCAATCTATTCATAT
454 GGGAT-CC-GGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATAT
* ** *
32100579 AAAGGTTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGTAAATTCGACCAAATATCGTTTCA
517 AAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCA
32100644 AATTATTTATTTCGCAAAACGCAA
582 AATTATTTATTTCGCAAAACGCAA
*
32100668 ATAACGAATGAGTTACACCACGT-GATGAAAATGCAACT-AAAAAAA-ATTATATGAAATAAAAC
1 ATAACGAATGAGTTACACCACGTGGA-GAAAATGCAACTAAAAAAAATATTATATGAAATAAAAT
* * * **
32100730 GGGAGGGGTGCAATATGTGGACTTCCCAGGAGGTCACCCATCCTCCTACTACTCTCGCCCAAGCA
65 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * *
32100795 CGCTTCAATGCGGAGTTCTGATGGGATACC-ATCCATTAGTGCTAGTATGATCGCACCCATCAAC
130 CGCTTCAATGCGGAGTTCTGATGGGAT-CCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAAC
* * * *
32100859 TGTTGAGCAATCTACTCATATAAAGG-TGGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGTA
194 TCTTGCGCAATCTATTCATATAAAGGCT-GCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCA
32100923 AATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACC
258 AATTCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACC
* * * * * *
32100988 ACGTGAAGAAAATGCAACT--AAAAAAATTATATGAAATAAAACGGGCGGGGTGCAATATGTGGA
323 ACGTGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
* * * * * * *
32101051 CTTCCCAGGATGTCACCCACCCCAGTAATACTCTCGCCCGAGCACGCTTAACTGCCGTGTT-TGA
388 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG-
* *
32101115 ATGGGATCCGGTGCATTAGTGCTTGTATGATCGCACCCGTCAACTCTTGCGCAATCCATTCATAT
452 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATAT
* * * * * * * *
32101180 AACGGTTGCCCCATATTGCACTTGCGGCTCGAA-TTTGATAGCAAATGCGACCAAATACCGTTTC
517 AAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAAT-GCAAATTCGACCAAATATCGTTTC
*
32101244 AAATTATTTATTTCGCAAAACGCAT
581 AAATTATTTATTTCGCAAAACGCAA
* *
32101269 ATAACGAATGAGTTACACCACGTGGAGAAAATGGAACTAAAAAAAATATTATATGAAATAAAAGG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
* * *
32101334 GGAGGGGTGCAACACGAGGACTTTCTAGGAGGTCACCCATCCTCGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* *
32101399 GCTTCAATGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTAGTATGATTGCACCCGTCAACTC
131 GCTTCAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTC
* * *
32101464 TTGTGCTATCTATTCATATAAAGGCTACCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAAT
196 TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAAT
* *
32101529 TCGATCAAATATCGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACG
261 TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACG
* **
32101594 TGGAGAAAATGCAACTAACAAAAAACATTATATGAAATAAAATGGGAGGGGGGCAACACGATCAC
326 TGGAGAAAATGCAACTAA-AAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGAC
* * * *
32101659 TTCCCAGGGGGGCACCCATCTTGGTACTACTCTCGCCCAAGCACGCTTCAA-TGCGGAGTTCTGA
389 TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTT-AACTGCGGAGTTCTGA
* * * * * *
32101723 TGGGATCCGATGCATGAGTGCTGGTATGATTGCCCCCGTCAACTCTTGTGCTATCTATTCATATA
453 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
* ** *
32101788 AAGGCTACCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAATTCGATCAAATATCGTTTCAA
518 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTC-A
*
32101853 AATTATTTATTTCGCACAACGCAA
582 AATTATTTATTTCGCAAAACGCAA
* * *
32101877 ATCACGAATGAGTTACTCCACGTGGAGAAAATGCAACTAAAAAAGATATTATATGAAATAAAATG
1 ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
** * * *
32101942 GGAGGGGTGCAACACGATCACTTCCCAGGGGGTCACCCATCTTGGTACTACTCTCGCCCAAGCAC
66 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
32102007 GCTTCAATGCGGAGT
131 GCTTCAATGCGGAGT
32102022 NNNNNNNNNN
Statistics
Matches: 5416, Mismatches: 630, Indels: 265
0.86 0.10 0.04
Matches are distributed among these distances:
580 2 0.00
581 90 0.02
582 86 0.02
583 32 0.01
584 155 0.03
588 1 0.00
589 1 0.00
590 1 0.00
594 2 0.00
596 3 0.00
597 189 0.03
598 8 0.00
599 110 0.02
600 244 0.05
601 600 0.11
602 768 0.14
603 1019 0.19
604 752 0.14
605 472 0.09
606 14 0.00
607 180 0.03
608 165 0.03
609 94 0.02
614 13 0.00
615 41 0.01
616 3 0.00
618 2 0.00
623 1 0.00
624 2 0.00
628 2 0.00
629 155 0.03
630 7 0.00
631 202 0.04
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (605 bp):
ATAACGAATGAGTTACACCACGTGGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAATG
GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
GCTTCAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTC
TTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAAATGCGCCTCGAATTTTAATGCAAAT
TCGACCAAATATCGTTTCAAATTATTTATTTCGCAAAACGCAAATAACGAATGAGTTACACCACG
TGGAGAAAATGCAACTAAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTT
CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAG
GCTGCCCCTTATCGCACTTGCGCCTCGAATTTTAATGCAAATTCGACCAAATATCGTTTCAAATT
ATTTATTTCGCAAAACGCAA
Found at i:32099064 original size:25 final size:25
Alignment explanation
Indices: 32099030--32099081 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
32099020 GTCAACTCTT
32099030 GCGCAATCTATTCATATAAAGGTTG
1 GCGCAATCTATTCATATAAAGGTTG
32099055 GCGCAATCTATTCATATAAAGGTTG
1 GCGCAATCTATTCATATAAAGGTTG
32099080 GC
1 GC
32099082 CCTTATCGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (25 bp):
GCGCAATCTATTCATATAAAGGTTG
Found at i:32140168 original size:302 final size:302
Alignment explanation
Indices: 32139617--32140575 Score: 1591
Period size: 302 Copynumber: 3.2 Consensus size: 302
32139607 NNNNNNNNNN
*
32139617 GAGTTCTGATAGG-ATCCGGTGCATTAGTGCTGGTATGATCGGC-CCCGTCAACTGTTGCACAAT
1 GAGTTCTGAT-GGAATCCGGTGCATTAGTGCTGGTATGA-CCGCACCCGTCAACTGTTGCACAAT
* *
32139680 CTATTCATATAAGGGCTGCCCCTTATCGCACTTGCGCGTCGAATTTGAATACAAATTCGACAAAA
64 CTATTCATATAAGGGCTGCCTCTTATCGCACTTGCGCGTCGAATTTGAACACAAATTCGACAAAA
* *
32139745 TATCGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCAAGAAAA
129 TATCGTTTTAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAA
* * ** * * * *
32139810 TGCAACTAAAAATACATTATATGAAATAAAATGGGAGGAGTGCAACACGTGGACTTCCCAGGAAG
194 TGCAACTAAAAAAACATTATATGAAATATAATTCGAAGCGTGCAACACGAGGACTTCCCAGGAGG
* * * * *
32139875 TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCG
259 TCACCCATCCTATTACTACCCTCGCCCAAGAATGCTTAGCTGCG
* * * *
32139919 GAGTTCTGATATG-ATCCGGTGCATTAGTGCTGGTATTACCCCACCCTTCAACTGTTGCACAATC
1 GAGTTCTGAT-GGAATCCGGTGCATTAGTGCTGGTATGACCGCACCCGTCAACTGTTGCACAATC
32139983 TATTCATATAAGGGCTGCCTCTTATCGCACTTGCGCGTCGAATTTGAACACAAATTCGACAAAAT
65 TATTCATATAAGGGCTGCCTCTTATCGCACTTGCGCGTCGAATTTGAACACAAATTCGACAAAAT
*
32140048 ATCGTTTTAAATTATTTATTTCACAAAACGCAAAAAACGAATGAGTTACACCACGTCGAGAAAAT
130 ATCGTTTTAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAAT
*
32140113 GCAACTAAAAAAACATTATATGAAATATAATTCGAAGCGTGCAACACGAGGACTTCCCAGGAGGG
195 GCAACTAAAAAAACATTATATGAAATATAATTCGAAGCGTGCAACACGAGGACTTCCCAGGAGGT
32140178 CACCCATCCTATTACTACCCTCGCCCAAGAATGCTTAGCTGCG
260 CACCCATCCTATTACTACCCTCGCCCAAGAATGCTTAGCTGCG
* *
32140221 GAGTTCTGATGGAATCCGGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTGTTGCACAATCT
1 GAGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGACCGCACCCGTCAACTGTTGCACAATCT
32140286 ATTCATATAAGGGCTGCCTCTTATCGCACTTGCGCGTCGAATTTGAACACAAATTCGACAAAATA
66 ATTCATATAAGGGCTGCCTCTTATCGCACTTGCGCGTCGAATTTGAACACAAATTCGACAAAATA
* * *
32140351 TCGTTTTAAATTATTTATTTCACAAAACGCAAATAAGGAATTAGTTACACCACGTTGAGAAAATG
131 TCGTTTTAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATG
32140416 CAACTAAAAAAACATTATATGAAATATAATTCGAAGCGTGCAACACGAGGACTTCCCAGGAGGTC
196 CAACTAAAAAAACATTATATGAAATATAATTCGAAGCGTGCAACACGAGGACTTCCCAGGAGGTC
32140481 ACCCATCCTATTACTACCCTCGCCCAAGAATGCTTAGCTGCG
261 ACCCATCCTATTACTACCCTCGCCCAAGAATGCTTAGCTGCG
* *
32140523 GAGTTCTGATGGAATCCGGTGCATTAGTGTTGGTATGATCGCACCCGTCAACT
1 GAGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGACCGCACCCGTCAACT
32140576 CNNNNNNNNN
Statistics
Matches: 620, Mismatches: 35, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
301 3 0.00
302 617 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (302 bp):
GAGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGACCGCACCCGTCAACTGTTGCACAATCT
ATTCATATAAGGGCTGCCTCTTATCGCACTTGCGCGTCGAATTTGAACACAAATTCGACAAAATA
TCGTTTTAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATG
CAACTAAAAAAACATTATATGAAATATAATTCGAAGCGTGCAACACGAGGACTTCCCAGGAGGTC
ACCCATCCTATTACTACCCTCGCCCAAGAATGCTTAGCTGCG
Found at i:32141113 original size:247 final size:247
Alignment explanation
Indices: 32140677--32142491 Score: 2596
Period size: 247 Copynumber: 7.4 Consensus size: 247
32140667 NNNNNNNNNN
* * * *
32140677 ATAAAAATATGTTTAGAAATAATAATTACCTTTGATTC-TTTTTAATTCCTTCGATTGAAAATCT
1 ATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATT-CTTTGATTGAAAATCT
* * * *
32140741 TGATTCAAGAATCTTATGAAATTTCTAATAGATCCATTTTGAGTTGGAATATCCACTGGTTTGTG
65 TGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTG
* *
32140806 GATTTCCTCTCAAAATTCAAGATCCACCGTTAAAGCACCTTAAGATTTTGAAGAAGATGTCATTA
130 GATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTA
*
32140871 ATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGATTCTAATCATC
195 ATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCATC
*
32140924 ATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTTTAAATTCTTTGATTGAAAATCTT
1 ATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATTCTTTGATTGAAAATCTT
*
32140989 GATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATACATTGATTTGTGG
66 GATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGG
* * *
32141054 ATTTCCTCTCAAAATTCAAAATCCTCCATTAAAGCACCTTAAGATTTTGAAGAAGATGTCATTAA
131 ATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAA
* *
32141119 TAAAAAATCATACAATTATCACTCAAATCATGTAAATATGCTTCTAATCATA
196 TAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCATC
* * * *
32141171 ATAAAAATAAGTTTAGCAATAATAATTACCTTTTATCCGTTTTAAATTCTTTGATTGAAAATCTT
1 ATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATTCTTTGATTGAAAATCTT
* *
32141236 GATTCAAGAATCTTAAGATATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGT
66 GATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGG
* * *
32141301 ATTTCCTCTCAAAATTCAAAATTCACCATTAAAGCACCTTAAGAATTTGAAGAAGATGACATTAA
131 ATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAA
*
32141366 TAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTGCTAATCATC
196 TAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCATC
* * * * * *
32141418 ATAAGAATAAGTTTAGAAATAATAATTACGTTTGATTCTTTCTAAATCCTTTAATTGAAAATATT
1 ATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATTCTTTGATTGAAAATCTT
* * * *
32141483 GATTCATGAACCTTGAGAAATTTCTAATAGATCCGTTTTGAGTTGGAACATCCATTGATTTGTGG
66 GATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGG
* * * * *
32141548 ATTTCCTCTCAAAATTCAAGAT-CACCATTAAAGCATCTTACGCTTTTGAAGAATATGACAGTAA
131 ATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAA
32141612 TAAAAAATCATGCAATTAT-ATCTCAAATCATGTAAATATGCTTCTAATCATC
196 TAAAAAATCATGCAATTATCA-CTCAAATCATGTAAATATGCTTCTAATCATC
* * * *
32141664 ACAAAAATAAGTTTAGAAATAATTATTACCTTTAATTCGTTCTAAATCCTTTGATTGAAAATCTT
1 ATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATTCTTTGATTGAAAATCTT
* *
32141729 GATTCAAGAATCTTGAGAAATTTCTAATAGATCCGTTTTGAGTTGGAACATCCATTGATTTGTGG
66 GATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGG
* * * * * *
32141794 ATTTCCTCTCAAAATTCAAGAT-CACCATTAAAGCATCTTACGCTTTTGGAGAATATGACAGTAA
131 ATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAA
*
32141858 TAAAAAATCATGCAATTAT-ATCTAAAATCATGTAAATATGCTTCTAATCATC
196 TAAAAAATCATGCAATTATCA-CTCAAATCATGTAAATATGCTTCTAATCATC
*
32141910 -TCAAAAATAAGTTTAGAAATAATAATTACCTTTAATTCGTTCTAAATTCTTTGATTGAAAATCT
1 AT-AAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATTCTTTGATTGAAAATCT
32141974 TGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTG
65 TGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTG
* * *
32142039 AATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTA
130 GATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTA
* *
32142104 ATAAAACATCATGCAATTATCACTCAAATCATGTAAATATG-TTGCTAATCAGC
195 ATAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTT-CTAATCATC
* * * *
32142157 ATAAAAATAAGTTTAGAAATAATAATTACATTTTATTCGTTCTAAATCCTTTGATTAAAAATCCT
1 ATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATTCTTTGATTGAAAAT-CT
32142222 TGATTCAA-AATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTG
65 TGATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTG
* * * ** *
32142286 GATTTCCTCTCAAAATTCAAGATCCAACATTAAAGAACCATGTG-TTCTTGGAAGAAGATGAAAT
130 GATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATT-TT-GAAGAAGATGACAT
* * * ** * * * * *
32142350 TGA-GAAAAATCCTTTAATTGA-CTCTCAAATCTTGTAAAAATGTTTCTAACCATC
193 TAATAAAAAATCATGCAATT-ATCACTCAAATCATGTAAATATGCTTCTAATCATC
* ** * * * * *
32142404 ATAAAAACAAGTTTAGGATTTAAT-ATTACCTTTG-TTTGACTCCAAATTCGTTGATTGAAAATA
1 ATAAAAATAAGTTTA-GAAATAATAATTACCTTTGATTCG-TTCTAAATTCTTTGATTGAAAATC
* * *
32142467 TTGATT-TAGAAACTTGAGAAATTTC
64 TTGATTCAAGAATCTTAAGAAATTTC
32142492 AGAATATTTT
Statistics
Matches: 1439, Mismatches: 114, Indels: 31
0.91 0.07 0.02
Matches are distributed among these distances:
245 2 0.00
246 491 0.34
247 903 0.63
248 43 0.03
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36
Consensus pattern (247 bp):
ATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAAATTCTTTGATTGAAAATCTT
GATTCAAGAATCTTAAGAAATTTCTAATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGG
ATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAA
TAAAAAATCATGCAATTATCACTCAAATCATGTAAATATGCTTCTAATCATC
Found at i:32142226 original size:14 final size:15
Alignment explanation
Indices: 32142200--32142233 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
32142190 TATTCGTTCT
32142200 AAATCCTTTGATTAA
1 AAATCCTTTGATTAA
*
32142215 AAATCC-TTGATTCA
1 AAATCCTTTGATTAA
32142229 AAATC
1 AAATC
32142234 TTAAGAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (15 bp):
AAATCCTTTGATTAA
Found at i:32148294 original size:17 final size:18
Alignment explanation
Indices: 32148263--32148299 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
32148253 TTTACTTCCT
32148263 ATTGGTTTTAATTAGTTA
1 ATTGGTTTTAATTAGTTA
*
32148281 ATTGG-TTTATTTAGTTA
1 ATTGGTTTTAATTAGTTA
32148298 AT
1 AT
32148300 GTGAGAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (18 bp):
ATTGGTTTTAATTAGTTA
Found at i:32148458 original size:41 final size:41
Alignment explanation
Indices: 32148413--32148495 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
32148403 AATTAAATGT
*
32148413 TAAATTAGTAAAAAGCAAAAAAGAAAGTGTCATCTCTTTCA
1 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
32148454 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
1 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
32148495 T
1 T
32148496 TTTAATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (41 bp):
TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
Found at i:32154035 original size:17 final size:17
Alignment explanation
Indices: 32154009--32154046 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32153999 AATATATTGT
*
32154009 ATATTTAACACAAATAA
1 ATATTCAACACAAATAA
*
32154026 ATATTCAACACAAATAG
1 ATATTCAACACAAATAA
32154043 ATAT
1 ATAT
32154047 CAAATTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.55, C:0.13, G:0.03, T:0.29
Consensus pattern (17 bp):
ATATTCAACACAAATAA
Found at i:32154463 original size:48 final size:48
Alignment explanation
Indices: 32154392--32154486 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
32154382 TACATTGCTT
32154392 AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGC
1 AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGC
* * * *
32154440 AAAAACGGCTAAGTCGGCCTAACTTGCAATGATAAAGGATTTAACAG
1 AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAG
32154487 AATTTCCTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGC
Found at i:32154732 original size:19 final size:19
Alignment explanation
Indices: 32154708--32154761 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 19
32154698 AAAGCTGTAT
32154708 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
*
32154727 ACAATTAGAAC-CT--GTAT
1 ACAATTAGAACTCTAAG-AC
32154744 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
32154762 TTACATAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 12 0.40
18 4 0.13
19 12 0.40
20 1 0.03
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:32154742 original size:36 final size:36
Alignment explanation
Indices: 32154691--32154761 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
32154681 ATCAAAGGCT
*
32154691 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAACCTGTATACAATTAGAACTCTAAGAC
*
32154727 ACAATTAGAACCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAACCTGTATACAATTAGAACTCTAAGA
32154762 TTACATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.25
Consensus pattern (36 bp):
ACAATTAAAACCTGTATACAATTAGAACTCTAAGAC
Found at i:32154749 original size:17 final size:17
Alignment explanation
Indices: 32154690--32154754 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 17
32154680 CATCAAAGGC
* *
32154690 TACAATTAAAAGCTGTA
1 TACAATTAGAACCTGTA
32154707 TACAATTAGAACTCTAAG-A
1 TACAATTAGAAC-CT--GTA
*
32154726 CACAATTAGAACCTGTA
1 TACAATTAGAACCTGTA
32154743 TACAATTAGAAC
1 TACAATTAGAAC
32154755 TCTAAGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
16 1 0.03
17 22 0.55
18 4 0.10
19 12 0.30
20 1 0.03
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (17 bp):
TACAATTAGAACCTGTA
Found at i:32155034 original size:24 final size:24
Alignment explanation
Indices: 32155007--32155053 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
32154997 TACTCATACA
*
32155007 TTGCTTTGTTCCATCATCTCAACT
1 TTGCCTTGTTCCATCATCTCAACT
* *
32155031 TTGCCTTGTTCTATCATTTCAAC
1 TTGCCTTGTTCCATCATCTCAAC
32155054 CATTTCAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.28, G:0.09, T:0.47
Consensus pattern (24 bp):
TTGCCTTGTTCCATCATCTCAACT
Found at i:32155863 original size:21 final size:22
Alignment explanation
Indices: 32155824--32155874 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
32155814 TTCTCTTAAA
32155824 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
32155846 CTCTCAATTTCCTTCAAAAAAT-
1 CTCTCAAATTCCTTC-CAAAATC
32155868 CTCTCAA
1 CTCTCAA
32155875 CTCCATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:32160556 original size:18 final size:17
Alignment explanation
Indices: 32160526--32160578 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
32160516 GCCATTGTTG
*
32160526 AAAATATTAAAAATTTT
1 AAAATATTTAAAATTTT
** *
32160543 AAAATTATTTAAAAAAATA
1 AAAA-TATTT-AAAATTTT
32160562 AAAATATTTAAAATTTT
1 AAAATATTTAAAATTTT
32160579 CTTTAAAAAA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
17 9 0.33
18 9 0.33
19 9 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAATATTTAAAATTTT
Found at i:32160661 original size:21 final size:22
Alignment explanation
Indices: 32160626--32160673 Score: 80
Period size: 21 Copynumber: 2.2 Consensus size: 22
32160616 TATGGATTTA
*
32160626 AGAGATTTTTTGAAGGAAATTG
1 AGAGATTTTTGGAAGGAAATTG
32160648 AGAGA-TTTTGGAAGGAAATTG
1 AGAGATTTTTGGAAGGAAATTG
32160669 AGAGA
1 AGAGA
32160674 ATATTTGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (22 bp):
AGAGATTTTTGGAAGGAAATTG
Found at i:32170234 original size:17 final size:17
Alignment explanation
Indices: 32170212--32170343 Score: 62
Period size: 17 Copynumber: 7.8 Consensus size: 17
32170202 AGAGCTCGCA
*
32170212 GGTGAGCTCTCA-TGCTT
1 GGTGAGCTCGCAGTG-TT
32170229 GGTGAGCTCGCAGTGTT
1 GGTGAGCTCGCAGTGTT
32170246 GGTGAGCT---A-T-TCT
1 GGTGAGCTCGCAGTGT-T
**
32170259 GGTGAGCTCGCAGTTCGCA
1 GGTGAGCTCGCAG-T-GTT
* *
32170278 GGTGAGCTCACAGTCTT
1 GGTGAGCTCGCAGTGTT
* * *
32170295 GGTGAGCTTGCATCTTTT
1 GGTGAGCTCGCA-GTGTT
* * *
32170313 AGTGAGCTTGCACAT-TT
1 GGTGAGCTCGCA-GTGTT
32170330 GGTGAGCTCGCAGT
1 GGTGAGCTCGCAGT
32170344 TCATAGTTAG
Statistics
Matches: 88, Mismatches: 17, Indels: 21
0.70 0.13 0.17
Matches are distributed among these distances:
12 1 0.01
13 10 0.11
14 1 0.01
16 2 0.02
17 43 0.49
18 19 0.22
19 12 0.14
ACGTcount: A:0.15, C:0.20, G:0.33, T:0.32
Consensus pattern (17 bp):
GGTGAGCTCGCAGTGTT
Found at i:32170394 original size:18 final size:18
Alignment explanation
Indices: 32170371--32170441 Score: 81
Period size: 22 Copynumber: 3.8 Consensus size: 18
32170361 GCTCGTACTC
32170371 TTGGTGAGCTCGCATCTT
1 TTGGTGAGCTCGCATCTT
32170389 TTGGTGAGCGAGCTCGCATCTT
1 TTGGT----GAGCTCGCATCTT
*
32170411 TTGGTGAGCTCGCA-CAT
1 TTGGTGAGCTCGCATCTT
*
32170428 TTGGTGAGATCGCA
1 TTGGTGAGCTCGCA
32170442 GTTCACAGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
17 15 0.32
18 14 0.30
22 18 0.38
ACGTcount: A:0.15, C:0.21, G:0.31, T:0.32
Consensus pattern (18 bp):
TTGGTGAGCTCGCATCTT
Found at i:32170404 original size:22 final size:22
Alignment explanation
Indices: 32170376--32170419 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
32170366 TACTCTTGGT
32170376 GAGCTCGCATCTTTTGGTGAGC
1 GAGCTCGCATCTTTTGGTGAGC
32170398 GAGCTCGCATCTTTTGGTGAGC
1 GAGCTCGCATCTTTTGGTGAGC
32170420 TCGCACATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.32
Consensus pattern (22 bp):
GAGCTCGCATCTTTTGGTGAGC
Found at i:32172765 original size:43 final size:42
Alignment explanation
Indices: 32172711--32172840 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
32172701 GAGCTCGCAC
*
32172711 GCAGTTCGCAGGTGAGCTTGCACATTTGGTGAGCTCGTAGTCT
1 GCAGTTAGCAGGTGAGCTTGCACATTTGGTGAGCTCG-AGTCT
*
32172754 GCAGTTAGCAGGTGAGCTTGCAC-TCTTGGTGAGCTCGCG-CT
1 GCAGTTAGCAGGTGAGCTTGCACAT-TTGGTGAGCTCGAGTCT
32172795 -C--TT----GGTGAGCTTGCACATTTGGTGAGCTCGCAGT-T
1 GCAGTTAGCAGGTGAGCTTGCACATTTGGTGAGCTCG-AGTCT
32172830 CGCAGTTAGCA
1 -GCAGTTAGCA
32172841 TAGATGGTCA
Statistics
Matches: 72, Mismatches: 3, Indels: 24
0.73 0.03 0.24
Matches are distributed among these distances:
34 25 0.35
35 3 0.04
37 1 0.01
38 2 0.03
39 2 0.03
40 1 0.01
41 2 0.03
42 2 0.03
43 34 0.47
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.29
Consensus pattern (42 bp):
GCAGTTAGCAGGTGAGCTTGCACATTTGGTGAGCTCGAGTCT
Found at i:32172786 original size:17 final size:17
Alignment explanation
Indices: 32172764--32172822 Score: 84
Period size: 17 Copynumber: 3.5 Consensus size: 17
32172754 GCAGTTAGCA
32172764 GGTGAGCTTGCACTCTT
1 GGTGAGCTTGCACTCTT
* *
32172781 GGTGAGCTCGCGCTCTT
1 GGTGAGCTTGCACTCTT
32172798 GGTGAGCTTGCACAT-TT
1 GGTGAGCTTGCAC-TCTT
32172815 GGTGAGCT
1 GGTGAGCT
32172823 CGCAGTTCGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
17 36 0.97
18 1 0.03
ACGTcount: A:0.12, C:0.22, G:0.34, T:0.32
Consensus pattern (17 bp):
GGTGAGCTTGCACTCTT
Found at i:32173422 original size:27 final size:27
Alignment explanation
Indices: 32173368--32173422 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
32173358 ATTTTAATAA
*
32173368 TTTTTAATTTAAAAAAAAGTTATAAAT
1 TTTTTAATTTAAAAAAAAGTAATAAAT
* *
32173395 TTTTTGAATTTTAAAAAAA-TAATTAAT
1 TTTTT-AATTTAAAAAAAAGTAATAAAT
32173422 T
1 T
32173423 GCTAACGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (27 bp):
TTTTTAATTTAAAAAAAAGTAATAAAT
Done.